BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022338
         (298 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8R116|NOTUM_MOUSE Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2
          Length = 503

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 15/203 (7%)

Query: 8   TGILSNKAEENPDFFNWNRVKLRYCDGASFSGDSQNEGAQLY-FRGQRIWLTAMQDLMAK 66
           TGILS++ EENP ++N N V + YC    +SG S       Y F G  I    +++L+ K
Sbjct: 166 TGILSSQPEENPHWWNANMVFIPYCSSDVWSGASPKSDKNEYAFMGSLIIQEVVRELLGK 225

Query: 67  GMQNADQALLSGCSAGGLASILHCDEFRDLFPK----TTKVKCLSDAGMFLDAVDVSGGH 122
           G+  A   LL+G SAGG   +L+ D   +L  +    + +V+ L+D+G FLD        
Sbjct: 226 GLSGAKVLLLAGSSAGGTGVLLNVDRVAELLEELGYPSIQVRGLADSGWFLDNKQYRRSD 285

Query: 123 TLRNMFAGVV-----SLQEVQKNLPITCTSQL---DPTSCFFPQNLVANIKTPMFLLNAA 174
            +  +           ++     +P  C  Q    +  +CFF   +   ++ P+F++   
Sbjct: 286 CIDTINCAPTDAIRRGIRYWSGMVPERCQRQFKEGEEWNCFFGYKVYPTLRCPVFVVQWL 345

Query: 175 YDAWQVQASLAPPTADP--HGYW 195
           +D  Q+       T  P   G W
Sbjct: 346 FDEAQLTVDNVHLTGQPVQEGQW 368


>sp|Q6P988|NOTUM_HUMAN Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2
          Length = 496

 Score = 75.5 bits (184), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 19/200 (9%)

Query: 8   TGILSNKAEENPDFFNWNRVKLRYCDGASFSG-DSQNEGAQLYFRGQRIWLTAMQDLMAK 66
           TGILS++ EENP ++N N V + YC    +SG  S++E  +  F G  I    +++L+ +
Sbjct: 159 TGILSSQPEENPYWWNANMVFIPYCSSDVWSGASSKSEKNEYAFMGALIIQEVVRELLGR 218

Query: 67  GMQNADQALLSGCSAGGLASILHCDEFRDLFPK----TTKVKCLSDAGMFL--------D 114
           G+  A   LL+G SAGG   +L+ D   +   K      +V+ L+D+G FL        D
Sbjct: 219 GLSGAKVLLLAGSSAGGTGVLLNVDRVAEQLEKLGYPAIQVRGLADSGWFLDNKQYRHTD 278

Query: 115 AVDVSGGHTLRNMFAGVVSLQEVQKNLPITCTSQL---DPTSCFFPQNLVANIKTPMFLL 171
            VD         +  G+     V   +P  C  Q    +  +CFF   +   ++ P+F++
Sbjct: 279 CVDTITCAPTEAIRRGIRYWNGV---VPERCRRQFQEGEEWNCFFGYKVYPTLRCPVFVV 335

Query: 172 NAAYDAWQVQASLAPPTADP 191
              +D  Q+       T  P
Sbjct: 336 QWLFDEAQLTVDNVHLTGQP 355


>sp|Q8L828|COB23_ARATH Coatomer subunit beta'-3 OS=Arabidopsis thaliana GN=At3g15980 PE=2
           SV=1
          Length = 909

 Score = 32.7 bits (73), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 175 YDAWQVQASLAPPTADPHGYWSDCKSDHAHCNSSQIQFFQDFRNQMLNAVEVFSKSN 231
           ++ WQV  S+   TA+  G ++  ++  +H +   I   + FRN  + A E     N
Sbjct: 799 FEDWQVALSVEANTAETRGVYTAAENYPSHADKPSITLVEAFRNLQVEAEESLENGN 855


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.134    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,388,974
Number of Sequences: 539616
Number of extensions: 4355104
Number of successful extensions: 8199
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8192
Number of HSP's gapped (non-prelim): 5
length of query: 298
length of database: 191,569,459
effective HSP length: 117
effective length of query: 181
effective length of database: 128,434,387
effective search space: 23246624047
effective search space used: 23246624047
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)