Query 022339
Match_columns 298
No_of_seqs 188 out of 1775
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 03:53:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022339.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022339hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v9f_A Ribosomal large subunit 100.0 3.7E-39 1.3E-43 303.7 13.3 196 60-283 6-201 (325)
2 1ksk_A Ribosomal small subunit 100.0 6.5E-32 2.2E-36 243.1 11.3 144 69-262 2-146 (234)
3 3dh3_A Ribosomal large subunit 100.0 1.5E-31 5.2E-36 248.3 13.5 180 68-297 4-194 (290)
4 1vio_A Ribosomal small subunit 100.0 3.5E-31 1.2E-35 239.8 11.1 143 70-262 2-145 (243)
5 2i82_A Ribosomal large subunit 99.9 5.6E-26 1.9E-30 202.4 13.0 106 137-275 12-118 (217)
6 1v9k_A Ribosomal large subunit 99.9 1.4E-24 4.7E-29 194.8 12.8 106 138-274 3-108 (228)
7 2oml_A Ribosomal large subunit 99.9 2.2E-23 7.5E-28 181.9 5.5 97 137-270 4-101 (189)
8 2olw_A Ribosomal large subunit 99.9 2.3E-23 8E-28 185.7 4.4 98 136-270 31-129 (217)
9 2gml_A Ribosomal large subunit 99.8 9.3E-19 3.2E-23 157.8 7.5 83 143-262 13-95 (237)
10 2k6p_A Uncharacterized protein 98.9 2.2E-10 7.4E-15 88.1 0.3 75 71-146 1-83 (92)
11 1dm9_A Hypothetical 15.5 KD pr 98.8 2.3E-09 7.7E-14 88.3 5.0 58 66-124 4-61 (133)
12 1c05_A Ribosomal protein S4 de 98.6 2.1E-08 7.3E-13 84.9 5.0 82 69-162 49-130 (159)
13 1p9k_A ORF, hypothetical prote 98.6 4.7E-09 1.6E-13 78.5 0.5 54 68-122 18-72 (79)
14 2vqe_D 30S ribosomal protein S 98.6 1.8E-08 6.2E-13 89.0 3.8 81 69-162 97-180 (209)
15 2cqj_A BRMS2, U3 small nucleol 98.4 1.3E-07 4.5E-12 69.4 2.9 51 70-121 7-60 (71)
16 3r8n_D 30S ribosomal protein S 98.3 1.7E-07 5.8E-12 82.3 1.9 55 69-123 93-147 (205)
17 3bbn_D Ribosomal protein S4; s 98.2 6.2E-07 2.1E-11 78.5 3.1 54 70-123 88-141 (201)
18 3hp7_A Hemolysin, putative; st 98.2 1.2E-06 4.2E-11 80.8 5.0 55 69-123 5-61 (291)
19 3j20_D 30S ribosomal protein S 98.0 2.1E-06 7.2E-11 73.9 3.1 52 70-122 102-156 (180)
20 2xzm_D Ribosomal protein S4 co 98.0 4.1E-06 1.4E-10 72.2 3.7 52 69-121 105-157 (181)
21 3u5c_J 40S ribosomal protein S 97.7 1.5E-05 5.3E-10 69.3 2.6 51 70-120 106-158 (197)
22 3iz6_C 40S ribosomal protein S 97.3 2.6E-06 8.8E-11 74.1 -7.4 55 68-123 106-161 (195)
23 3j20_E 30S ribosomal protein S 97.1 0.0011 3.8E-08 59.3 7.4 55 68-122 40-95 (243)
24 1k8w_A TRNA pseudouridine synt 96.8 0.0012 4.1E-08 61.6 5.6 72 144-258 25-97 (327)
25 1r3e_A TRNA pseudouridine synt 96.7 0.0011 3.9E-08 61.3 4.6 72 144-258 3-75 (309)
26 2aus_C Pseudouridine synthase; 96.7 0.0011 3.9E-08 62.1 4.5 72 142-256 44-115 (334)
27 3kbg_A 30S ribosomal protein S 96.7 0.0021 7.2E-08 56.4 5.8 53 68-120 5-58 (213)
28 1sgv_A TRNA pseudouridine synt 96.6 0.0018 6.1E-08 60.2 4.6 73 143-258 5-78 (316)
29 2apo_A Probable tRNA pseudouri 96.5 0.0019 6.4E-08 61.1 4.2 72 142-256 64-135 (357)
30 3u28_A H/ACA ribonucleoprotein 96.2 0.005 1.7E-07 58.9 5.4 76 141-259 56-132 (400)
31 3iz6_D 40S ribosomal protein S 94.8 0.028 9.5E-07 50.7 4.7 72 69-150 40-112 (265)
32 2xzm_W 40S ribosomal protein S 94.7 0.069 2.4E-06 48.1 7.1 55 68-122 39-96 (260)
33 3u5c_E RP5, S7, YS6, 40S ribos 94.0 0.029 9.9E-07 50.5 3.2 55 68-122 39-94 (261)
34 1jil_A Tyrrs, tyrosyl-tRNA syn 90.3 0.052 1.8E-06 52.3 0.0 49 70-118 352-400 (420)
35 1h3f_A Tyrosyl-tRNA synthetase 90.0 0.35 1.2E-05 46.6 5.5 47 70-116 368-414 (432)
36 1fm0_D Molybdopterin convertin 89.2 0.81 2.8E-05 32.9 5.8 52 68-122 23-76 (81)
37 2jan_A Tyrosyl-tRNA synthetase 89.0 0.25 8.7E-06 47.7 3.6 45 72-116 357-401 (432)
38 2ts1_A Tyrosyl-tRNA synthetase 84.0 0.21 7E-06 48.1 0.0 48 70-117 351-398 (419)
39 2ktl_A Tyrosyl-tRNA synthetase 82.0 1.4 4.8E-05 36.9 4.4 37 70-106 49-85 (164)
40 2hj1_A Hypothetical protein; s 78.9 0.24 8.3E-06 38.0 -1.2 53 68-123 33-85 (97)
41 3rpf_C Molybdopterin convertin 76.0 0.65 2.2E-05 33.2 0.4 50 70-122 20-69 (74)
42 1wv3_A Similar to DNA segregat 74.4 3.8 0.00013 36.0 5.1 41 94-149 133-174 (238)
43 3fm8_A Kinesin-like protein KI 73.3 4.5 0.00015 32.0 4.8 25 96-121 90-114 (124)
44 2q5w_D Molybdopterin convertin 71.7 3.1 0.00011 29.4 3.2 25 97-122 48-72 (77)
45 1rws_A Hypothetical protein PF 71.5 2.3 7.8E-05 30.6 2.4 44 69-122 29-72 (77)
46 3po0_A Small archaeal modifier 69.4 3.7 0.00013 30.0 3.3 26 96-122 59-84 (89)
47 3dwg_C 9.5 kDa culture filtrat 68.0 6.6 0.00023 28.8 4.5 26 97-122 60-88 (93)
48 1ryj_A Unknown; beta/alpha pro 63.8 5.6 0.00019 27.9 3.2 44 69-122 22-65 (70)
49 2cu3_A Unknown function protei 62.4 6.2 0.00021 27.1 3.1 45 69-122 12-59 (64)
50 3hvz_A Uncharacterized protein 61.1 6.1 0.00021 28.7 3.0 25 98-123 44-68 (78)
51 1tyg_B YJBS; alpha beta barrel 60.0 7.3 0.00025 28.9 3.3 46 68-122 33-82 (87)
52 2kl0_A Putative thiamin biosyn 59.4 4.4 0.00015 29.0 1.9 45 69-122 13-60 (73)
53 4egx_A Kinesin-like protein KI 58.5 9.6 0.00033 32.2 4.2 24 96-120 140-163 (184)
54 2k5p_A THis protein, thiamine- 57.7 4.8 0.00017 29.2 1.9 46 69-122 16-64 (78)
55 1vjk_A Molybdopterin convertin 57.6 5 0.00017 30.0 2.1 25 97-122 69-93 (98)
56 1f0z_A THis protein; ubiquitin 57.4 5.4 0.00018 27.5 2.1 46 68-122 13-61 (66)
57 2g1e_A Hypothetical protein TA 55.5 20 0.00067 25.8 5.1 25 97-121 57-84 (90)
58 4ejq_A Kinesin-like protein KI 53.6 9.1 0.00031 31.2 3.2 26 95-121 109-134 (154)
59 2k9x_A Tburm1, uncharacterized 49.3 11 0.00037 29.2 2.8 45 72-120 39-95 (110)
60 2kmm_A Guanosine-3',5'-BIS(dip 49.0 12 0.0004 25.8 2.8 46 69-122 17-62 (73)
61 2l32_A Small archaeal modifier 48.9 5.7 0.0002 28.4 1.1 44 68-122 18-61 (74)
62 3uv0_A Mutator 2, isoform B; F 42.9 7.8 0.00027 29.8 1.0 22 95-118 61-82 (102)
63 3hx1_A SLR1951 protein; P74513 42.2 17 0.00057 28.7 3.0 25 96-122 82-106 (131)
64 3gqs_A Adenylate cyclase-like 41.7 13 0.00046 27.8 2.3 26 96-122 69-94 (106)
65 1wln_A Afadin; beta sandwich, 41.5 12 0.0004 28.9 1.9 26 95-121 79-104 (120)
66 1wgk_A Riken cDNA 2900073H19 p 38.3 6.2 0.00021 30.8 -0.2 46 72-121 47-102 (114)
67 2og0_A Excisionase; protein-DN 37.4 36 0.0012 22.7 3.6 29 71-99 3-31 (52)
68 2qjl_A URM1, ubiquitin-related 36.3 26 0.00089 26.0 3.1 25 97-121 66-93 (99)
69 2rsx_A Uncharacterized protein 35.8 97 0.0033 25.5 6.7 53 50-105 42-95 (159)
70 2l52_A Methanosarcina acetivor 35.8 13 0.00043 27.9 1.2 25 97-121 66-93 (99)
71 3po8_A RV0020C protein, putati 35.0 23 0.00078 26.2 2.6 25 96-122 65-89 (100)
72 1v8c_A MOAD related protein; r 34.4 26 0.00087 29.0 3.0 26 97-122 54-82 (168)
73 4h87_A Kanadaptin; FHA domain 32.4 34 0.0012 26.9 3.3 26 95-121 93-120 (130)
74 2jqj_A DNA damage response pro 32.1 25 0.00087 28.2 2.6 29 94-122 85-113 (151)
75 1r21_A Antigen KI-67; beta san 31.9 23 0.0008 27.4 2.3 25 96-121 75-99 (128)
76 3oug_A Aspartate 1-decarboxyla 30.1 44 0.0015 26.0 3.5 23 95-121 69-91 (114)
77 2xt9_B Putative signal transdu 28.3 36 0.0012 25.8 2.7 25 95-121 72-96 (115)
78 2pie_A E3 ubiquitin-protein li 25.1 50 0.0017 25.9 3.2 26 96-122 75-102 (138)
79 2kb3_A Oxoglutarate dehydrogen 24.5 35 0.0012 27.3 2.1 24 96-121 108-131 (143)
80 1g6g_A Protein kinase RAD53; b 24.4 48 0.0016 25.6 2.9 29 94-122 77-106 (127)
81 1uhe_A Aspartate 1-decarboxyla 23.8 39 0.0013 25.6 2.1 22 95-120 40-61 (97)
82 1vc3_B L-aspartate-alpha-decar 23.2 57 0.002 24.6 2.9 22 95-120 42-63 (96)
83 1pm6_A Excisionase; antiparall 23.2 66 0.0023 22.9 3.1 29 71-99 3-31 (72)
84 1g3g_A Protien kinase SPK1; FH 23.0 56 0.0019 26.5 3.1 29 94-122 105-134 (164)
85 1gxc_A CHK2, CDS1, serine/thre 22.8 45 0.0015 26.6 2.5 28 95-122 102-130 (149)
86 3plx_B Aspartate 1-decarboxyla 22.6 42 0.0014 25.7 2.1 23 95-121 41-63 (102)
87 1dmz_A Protein (protein kinase 22.6 40 0.0014 27.3 2.1 28 94-121 81-109 (158)
88 1mzk_A Kinase associated prote 21.0 49 0.0017 26.0 2.3 28 95-122 75-111 (139)
89 1uht_A Expressed protein; FHA 20.8 28 0.00097 26.5 0.8 27 96-122 76-103 (118)
90 3plu_A Ubiquitin-like modifier 20.8 13 0.00046 27.9 -1.0 63 56-122 30-92 (93)
91 1lgp_A Cell cycle checkpoint p 20.8 32 0.0011 26.1 1.1 27 96-122 68-95 (116)
No 1
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=100.00 E-value=3.7e-39 Score=303.75 Aligned_cols=196 Identities=39% Similarity=0.611 Sum_probs=107.8
Q ss_pred EEEEEcCCCccchHHHHHHhccCCcCHHHHHHHHHCCceEECCEEeccccccccCCCEEeeccccccccccccCCCCeee
Q 022339 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDI 139 (298)
Q Consensus 60 ~~~~v~~~~~g~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD~I~i~~~~~~~~~~~~~~~~~~I 139 (298)
++++|+..++++|||+||++.++.+||+.++++|++|.|+|||+++.++++.|.+||+|++...........++..+++|
T Consensus 6 ~~~~v~~~~~g~RLd~~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~~~~~~~~~~~~~~~i 85 (325)
T 1v9f_A 6 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDI 85 (325)
T ss_dssp ----------------------------------------------------------------------CCCCCCCCCE
T ss_pred EEEEECCccCCchHHHHHHhhccccCHHHHHHHHHCCCEEECCEEccCCCCEeCCCCEEEEeccccccccCCcccCCCeE
Confidence 45677888899999999999876899999999999999999999865899999999999997654332223345667899
Q ss_pred eecCCcEEEEeCCCCceeecCCCCCCccHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCceecccCC
Q 022339 140 VYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLD 219 (298)
Q Consensus 140 lyeD~~llvvnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vhRLD 219 (298)
||||++++|||||+||+||+.++....|+++.|..++.. .. ...++++|||||
T Consensus 86 lyed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~--~~-------------------------~~~~~~~vhRLD 138 (325)
T 1v9f_A 86 VYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP--IA-------------------------DVPRAGIVHRLD 138 (325)
T ss_dssp EEECSSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGG--GG-------------------------GSGGGGBCCCCC
T ss_pred EEECCCEEEEECCCCCeEecCCCCCCccHHHHHHHHHHh--cC-------------------------CCCceeeecCCC
Confidence 999999999999999999998887778999999877521 00 124678999999
Q ss_pred CCCceeEEEEcCHHHHHHHHHHHhcCeeceEEEEEEeeecCCCCcEEEccceeCCCCCeEEEEc
Q 022339 220 KGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 283 (298)
Q Consensus 220 ~~TSGLlL~Ak~~~~~~~L~~~f~~~~i~K~YlAlv~G~~~~~~g~I~~pl~~~~~~~~~~~~~ 283 (298)
++||||||||+|..+++.|+.+|+.+.++|+|+|+|.|.+.. +|+|+.||.++..++.++.+.
T Consensus 139 ~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~Y~a~v~G~~~~-~g~i~~~i~~~~~~~~~~~v~ 201 (325)
T 1v9f_A 139 KDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGTVDEPISRHPTKRTHMAVH 201 (325)
T ss_dssp TTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEEESCCCC-CEEEECCEEECSSCTTCEEEC
T ss_pred CCCeeEEEEEcCHHHHHHHHHHHHcCCeeEEEEEEEeCCCCC-CCEEeeeeeECCCCCEEEEEC
Confidence 999999999999999999999999999999999999999977 899999999987666666554
No 2
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=99.97 E-value=6.5e-32 Score=243.12 Aligned_cols=144 Identities=20% Similarity=0.303 Sum_probs=122.8
Q ss_pred ccchHHHHHHhccCCcCHHHHHHHHHCCceEECCEEeccccccccCCCEEeeccccccccccccCCCCeeeeec-CCcEE
Q 022339 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYE-DDNVL 147 (298)
Q Consensus 69 ~g~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD~I~i~~~~~~~~~~~~~~~~~~Ilye-D~~ll 147 (298)
+++|||+||++. +.+||+.++++|++|.|+|||++++++++.|++||.|++.. ..|+|| |++++
T Consensus 2 ~~~RLd~~L~~~-~~~SR~~~~~li~~G~V~VNG~~v~~~~~~v~~gD~I~v~~--------------~~i~~e~d~~~l 66 (234)
T 1ksk_A 2 SHMRLDKFIAQQ-LGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDG--------------NPLAQQHGPRYF 66 (234)
T ss_dssp CCEEHHHHHHHH-HTCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETT--------------EEECCCCCCCEE
T ss_pred CcccHHHHHHHc-CCCCHHHHHHHHHcCeEEECCEEeCCCCCCCCCCCEEEEeC--------------eEeecCCCCEEE
Confidence 578999999987 57999999999999999999999966899999999998852 147999 99999
Q ss_pred EEeCCCCceeecCCCCCCccHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCceecccCCCCCceeEE
Q 022339 148 VVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 227 (298)
Q Consensus 148 vvnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vhRLD~~TSGLlL 227 (298)
|+|||+|++||+.++. ..|+++.|..++ ..++++|||||++||||||
T Consensus 67 vvnKP~G~~~~~~~~~-~~tl~~~l~~~~--------------------------------~~~~~~vhRLD~~TsGlll 113 (234)
T 1ksk_A 67 MLNKPQGYVCSTDDPD-HPTVLYFLDEPV--------------------------------AWKLHAAGRLDIDTTGLVL 113 (234)
T ss_dssp EEEECTTCBSSSSCSS-SCBGGGGCCCTT--------------------------------GGGCEESSCCCTTCEEEEE
T ss_pred EEECCCCCEeCCCCCC-CCcHHHHhhhhh--------------------------------cCCeeEcCCCCCCCeeEEE
Confidence 9999999999998774 667766543221 1357899999999999999
Q ss_pred EEcCHHHHHHHHHHHhcCeeceEEEEEEeeecCCC
Q 022339 228 VAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQS 262 (298)
Q Consensus 228 ~Ak~~~~~~~L~~~f~~~~i~K~YlAlv~G~~~~~ 262 (298)
||+|..++..|.. +++.++|+|+|+|.|.+..+
T Consensus 114 ~ak~~~~~~~l~~--~~~~v~K~Y~a~v~g~~~~~ 146 (234)
T 1ksk_A 114 MTDDGQWSHRITS--PRHHCEKTYLVTLESPVADD 146 (234)
T ss_dssp EESCHHHHHHHHC--TTSCCCEEEEEEESSCCCTT
T ss_pred EEcCHHHHHHHhC--CCCCCCeEEEEEEccCCCHH
Confidence 9999887777754 67899999999999998654
No 3
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=99.97 E-value=1.5e-31 Score=248.25 Aligned_cols=180 Identities=22% Similarity=0.275 Sum_probs=139.1
Q ss_pred CccchHHHHHHhccCCcCHHHHHHHHHCCceEECCEEeccccccccCCCEEeeccccccccccccCCCCeeeeecCCcEE
Q 022339 68 AGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVL 147 (298)
Q Consensus 68 ~~g~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD~I~i~~~~~~~~~~~~~~~~~~IlyeD~~ll 147 (298)
++++|||+||++. +.+||++++++|++|+|+|||+++ ++++.|.+||.|+|......+ ..|||++||
T Consensus 4 ~~g~RLdk~La~~-g~~SR~~a~~lI~~G~V~VNG~~v-~~~~~V~~gD~I~v~~~~i~~-----------~~~ed~~~l 70 (290)
T 3dh3_A 4 DSSVRLNKYISES-GICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEP-----------REAEDLVLI 70 (290)
T ss_dssp CCCEEHHHHHHTT-TSSCHHHHHHHHHTTCEEETTEEC-CTTCEECTTCCEEETTEEECC-----------CCGGGCCEE
T ss_pred ccchHHHHHHHhC-CCCCHHHHHHHHHCCCEEECCEEc-cCCcCcCCCCEEEeccccccc-----------cccccceEE
Confidence 5789999999987 678999999999999999999999 799999999999997643211 138999999
Q ss_pred EEeCCCCceeecCCCCCCccHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCceecccCCCCCceeEE
Q 022339 148 VVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 227 (298)
Q Consensus 148 vvnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vhRLD~~TSGLlL 227 (298)
|+|||+|++||+.++. ..|+++.|.+ ..++++|||||++||||||
T Consensus 71 vvnKP~G~~~~~~~~~-~~tl~~~l~~----------------------------------~~~~~~VhRLD~dTSGLll 115 (290)
T 3dh3_A 71 ALNKPVGIVSTTEDGE-RDNIVDFVNH----------------------------------SKRVFPIGRLDKDSQGLIF 115 (290)
T ss_dssp EEEECTTCBCCCCSSC-TTBHHHHHTC----------------------------------SSCCEESSCCCTTCEEEEE
T ss_pred EEECCCccccCCCCCC-CCcHHHHhhc----------------------------------cCceeeeccCCCCCcceEE
Confidence 9999999999998765 5688876642 1457889999999999999
Q ss_pred EEcCHHHHHHHHHHHhcCeeceEEEEEEeeecCCCC------c-----EEEccceeCCCCCeEEEEcCCCCCchhhhhhh
Q 022339 228 VAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSS------G-----RIEVPISRDPNNRIRMAAIPGSNKHGQARHAA 296 (298)
Q Consensus 228 ~Ak~~~~~~~L~~~f~~~~i~K~YlAlv~G~~~~~~------g-----~I~~pl~~~~~~~~~~~~~~~~~~~~~~r~~~ 296 (298)
||+|.+++..|.. ..+.++|+|+|+|.|.+.++. | ....|......+...+.+...++..+|+|++|
T Consensus 116 la~d~~~~~~L~~--~~~~v~K~Y~a~V~G~~~~~~i~~l~~Gv~l~~~~~~~~~v~~~~~~~l~l~l~tGR~HQIR~~~ 193 (290)
T 3dh3_A 116 LTNHGDLVNKILR--AGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMC 193 (290)
T ss_dssp EESCTTHHHHHHC--GGGCCCEEEEEEESSCCCHHHHHHHHTCCBCSSSBCCCCEEEECSSSEEEEEESCCCTTHHHHHH
T ss_pred EcCCHHHHHHHHH--hhCCcCEEEEEEECCCCCHHHHHHHhcCcccCCcccceEEEEEcCCeEEEEEEeCCCChHHHHHH
Confidence 9999988888866 467799999999999986432 1 11112111111222344444455589999998
Q ss_pred c
Q 022339 297 S 297 (298)
Q Consensus 297 ~ 297 (298)
+
T Consensus 194 ~ 194 (290)
T 3dh3_A 194 E 194 (290)
T ss_dssp H
T ss_pred H
Confidence 5
No 4
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=99.97 E-value=3.5e-31 Score=239.85 Aligned_cols=143 Identities=22% Similarity=0.330 Sum_probs=119.2
Q ss_pred cchHHHHHHhccCCcCHHHHHHHHHCCceEECCEEeccccccccCCCEEeeccccccccccccCCCCeeeeecCCc-EEE
Q 022339 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDN-VLV 148 (298)
Q Consensus 70 g~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD~I~i~~~~~~~~~~~~~~~~~~IlyeD~~-llv 148 (298)
.+|||+||++. +.+||+.++++|++|.|+|||++++++++.|.+||.|.+.. ..|+|||++ ++|
T Consensus 2 ~~RLd~~L~~~-~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~--------------~~i~~ed~~~~lv 66 (243)
T 1vio_A 2 SLRLDKFIAEN-VGLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFED--------------ELLTWIEEGQYFM 66 (243)
T ss_dssp CEEHHHHHHHH-HTCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETT--------------EECCSSCCCCEEE
T ss_pred CccHHHHHHHc-CCCCHHHHHHHHHcCcEEECCEEeCCCCCCcCCCCEEEEec--------------cccccCCCCEEEE
Confidence 36999999987 57999999999999999999999967899999999888742 258999999 999
Q ss_pred EeCCCCceeecCCCCCCccHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCceecccCCCCCceeEEE
Q 022339 149 VNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 228 (298)
Q Consensus 149 vnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vhRLD~~TSGLlL~ 228 (298)
+|||+|++||+.++. ..|+++.|..++ ..++++|||||++|||||||
T Consensus 67 vnKP~G~~~~~~~~~-~~tl~~~l~~~~--------------------------------~~~~~~vhRLD~~TsGlll~ 113 (243)
T 1vio_A 67 LNKPQGCVCSNDDGD-YPTIYQFFDYPL--------------------------------AGKLHSAGRLDVDTTGLVLL 113 (243)
T ss_dssp EEECTTCBSSCCC---CCBGGGGSCTTG--------------------------------GGGCEESSCCCTTCEEEEEE
T ss_pred EECCCCCEeCCCCCC-CCcHHHHHhHHh--------------------------------cCCEeEccCCCCCCeEEEEE
Confidence 999999999998764 567766543221 12578999999999999999
Q ss_pred EcCHHHHHHHHHHHhcCeeceEEEEEEeeecCCC
Q 022339 229 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQS 262 (298)
Q Consensus 229 Ak~~~~~~~L~~~f~~~~i~K~YlAlv~G~~~~~ 262 (298)
|+|..++..+.. +++.++|+|+|+|.|.+..+
T Consensus 114 ak~~~~a~~l~~--~~~~v~K~Y~a~v~g~~~~~ 145 (243)
T 1vio_A 114 TDDGQWSHRITS--PKHHCEKTYLVTLADPVEEN 145 (243)
T ss_dssp ESCHHHHHHHHC--TTSCCCEEEEEEESSCCCTT
T ss_pred EECHHHHHHHhC--CCCCCCEEEEEEEeCCCCHH
Confidence 999876666643 67899999999999998654
No 5
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=99.93 E-value=5.6e-26 Score=202.41 Aligned_cols=106 Identities=31% Similarity=0.513 Sum_probs=94.5
Q ss_pred eeeeecCCcEEEEeCCCCceeecCCC-CCCccHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCceec
Q 022339 137 LDIVYEDDNVLVVNKPAHMVVHPAPG-NATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIV 215 (298)
Q Consensus 137 ~~IlyeD~~llvvnKPaGl~v~~~~~-~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v 215 (298)
++|||||++++|||||+|++||+..+ ....|+++.|..++ ..+++|
T Consensus 12 ~~ilyed~~~lvvnKP~G~~~~~~~~~~~~~tl~~~l~~~~---------------------------------~~~~~v 58 (217)
T 2i82_A 12 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY---------------------------------PQAESV 58 (217)
T ss_dssp CCEEEECSSEEEEEECTTSBSSCCSSGGGCCBHHHHHHHHC---------------------------------TTCEES
T ss_pred ceEEEECCCEEEEECCCCCeEeCCCCCCchhHHHHHHHHHC---------------------------------CCCcee
Confidence 78999999999999999999998764 45668988887653 135689
Q ss_pred ccCCCCCceeEEEEcCHHHHHHHHHHHhcCeeceEEEEEEeeecCCCCcEEEccceeCCC
Q 022339 216 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPN 275 (298)
Q Consensus 216 hRLD~~TSGLlL~Ak~~~~~~~L~~~f~~~~i~K~YlAlv~G~~~~~~g~I~~pl~~~~~ 275 (298)
||||++||||||||+|.++++.|+.+|+++.++|+|+|+|.|.+..++++|+.||.++..
T Consensus 59 hRLD~~TSGlll~ak~~~~~~~l~~~f~~~~v~K~Y~a~v~G~~~~~~g~i~~~l~~~~~ 118 (217)
T 2i82_A 59 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 118 (217)
T ss_dssp SCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEEESCCSSSEEEEECCEEECGG
T ss_pred ecCCCCCeEEEEEEeCHHHHHHHHHHHHhCCeeEEEEEEEecccCCCCcEEecceeecCC
Confidence 999999999999999999999999999999999999999999998888999999977643
No 6
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=99.91 E-value=1.4e-24 Score=194.79 Aligned_cols=106 Identities=31% Similarity=0.507 Sum_probs=92.9
Q ss_pred eeeecCCcEEEEeCCCCceeecCCCCCCccHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCceeccc
Q 022339 138 DIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 217 (298)
Q Consensus 138 ~IlyeD~~llvvnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vhR 217 (298)
+|+|||++++|||||+|++||++.+ ...++++.+..++. ...++++|||
T Consensus 3 ~Ilyed~~~lvvnKP~G~~~~~~~~-~~~~l~~~l~~~~~------------------------------~~~~~~~VhR 51 (228)
T 1v9k_A 3 VIMYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGLRALRP------------------------------EARFLELVHR 51 (228)
T ss_dssp CEEEECSSEEEEEECTTSCSSCCSS-SBCCHHHHHHHHST------------------------------TCSCCEESSC
T ss_pred CEEEECCCEEEEECCCCCeEecCCC-hHHHHHHHHHHHcC------------------------------CCCccceEec
Confidence 5899999999999999999999766 45678887765431 1235789999
Q ss_pred CCCCCceeEEEEcCHHHHHHHHHHHhcCeeceEEEEEEeeecCCCCcEEEccceeCC
Q 022339 218 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDP 274 (298)
Q Consensus 218 LD~~TSGLlL~Ak~~~~~~~L~~~f~~~~i~K~YlAlv~G~~~~~~g~I~~pl~~~~ 274 (298)
||++||||||||+|..+++.|+.+|+++.++|+|+|+|.|.+..++++|+.||.+++
T Consensus 52 LD~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~Y~a~v~G~~~~~~~~i~~~l~~~~ 108 (228)
T 1v9k_A 52 LDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNI 108 (228)
T ss_dssp CCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEEESCCCTTCCEECCCEEEEE
T ss_pred CCCCCeEEEEEEeCHHHHHHHHHHHHhCCeeEEEEEEEecccCCCCCEEeCceeccC
Confidence 999999999999999999999999999999999999999999888999999987653
No 7
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=99.88 E-value=2.2e-23 Score=181.86 Aligned_cols=97 Identities=21% Similarity=0.277 Sum_probs=76.6
Q ss_pred eeeeecCCcEEEEeCCCCceeecCCCCCCccHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCceecc
Q 022339 137 LDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVH 216 (298)
Q Consensus 137 ~~IlyeD~~llvvnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vh 216 (298)
..|||||++++|||||+||+||+.++....|+.+.|. ..++++||
T Consensus 4 ~~ilyed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~-----------------------------------~~~~~~vh 48 (189)
T 2oml_A 4 RKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP-----------------------------------VQGVYAAG 48 (189)
T ss_dssp ----CCCCCEEEEEECTTBCSCSSCCTTCBCGGGTCC-----------------------------------CSSCEESS
T ss_pred cccccCCCeEEEEECCCCCEecCCCCCCCCCHHHHcC-----------------------------------CCCceECC
Confidence 3589999999999999999999988766666654321 12567899
Q ss_pred cCCCCCceeEEEEcCHHHHHHHHHHHhcCeeceEEEEEEeeecCCCC-cEEEccc
Q 022339 217 RLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSS-GRIEVPI 270 (298)
Q Consensus 217 RLD~~TSGLlL~Ak~~~~~~~L~~~f~~~~i~K~YlAlv~G~~~~~~-g~I~~pl 270 (298)
|||++||||||||+|.++++.|+.+ .+.++|+|+|+|.|.+.+++ +.|..++
T Consensus 49 RLD~~TSGlll~ak~~~~~~~l~~~--~~~v~K~Y~a~v~G~~~~~~~~~i~~~i 101 (189)
T 2oml_A 49 RLDRDSEGLLVLTNNGALQARLTQP--GKRTGKIYYVQVEGIPTQDALEALRNGV 101 (189)
T ss_dssp CCCTTCEEEEEEESCHHHHHHHHST--TSCCCEEEEEEEESCCCHHHHHHHHHCC
T ss_pred CCCCCCeeEEEEEcCHHHHHHHhCc--cCCCcEEEEEEEcCCCCHHHHHHHHcCc
Confidence 9999999999999999999999886 67899999999999986544 2344444
No 8
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli}
Probab=99.87 E-value=2.3e-23 Score=185.70 Aligned_cols=98 Identities=20% Similarity=0.271 Sum_probs=75.5
Q ss_pred CeeeeecCCcEEEEeCCCCceeecCCCCCCccHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCceec
Q 022339 136 PLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIV 215 (298)
Q Consensus 136 ~~~IlyeD~~llvvnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v 215 (298)
.++|||||+++||||||+|++||+.++....|+.+.|. ..++++|
T Consensus 31 ~~~Ilyed~~~lvvnKP~Gl~~~~~~~~~~~tl~~~l~-----------------------------------~~~~~~V 75 (217)
T 2olw_A 31 RRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP-----------------------------------VQGVYAA 75 (217)
T ss_dssp ------CCCCEEEEEECTTBCSCSSCCTTSBCGGGTCC-----------------------------------CCSCEES
T ss_pred cCceEeeCCcEEEEECCCCCEeccCCCCCCccHHHHhC-----------------------------------cCCceEC
Confidence 46899999999999999999999988766666654321 1256789
Q ss_pred ccCCCCCceeEEEEcCHHHHHHHHHHHhcCeeceEEEEEEeeecCCCC-cEEEccc
Q 022339 216 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSS-GRIEVPI 270 (298)
Q Consensus 216 hRLD~~TSGLlL~Ak~~~~~~~L~~~f~~~~i~K~YlAlv~G~~~~~~-g~I~~pl 270 (298)
||||++||||||||+|.+++..|+.+ .+.++|+|+|+|.|.+..+. +.|..++
T Consensus 76 hRLDr~TSGllllAk~~~~~~~L~~~--~~~v~K~Y~A~V~G~~~~~~~~~i~~~i 129 (217)
T 2olw_A 76 GRLDRDSEGLLVLTNNGALQARLTQP--GKRTGKIYYVQVEGIPTQDALEALRNGV 129 (217)
T ss_dssp SCCCTTCEEEEEEESCHHHHHHHHCT--TCCCCEEEEEEEESCCCHHHHHHHHHCC
T ss_pred CCCCCCCeeEEEEEcCHHHHHHHHcc--cccCCEEEEEEEccCCCHHHHHHHhCCE
Confidence 99999999999999999999999886 57899999999999986554 3444444
No 9
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=99.75 E-value=9.3e-19 Score=157.76 Aligned_cols=83 Identities=20% Similarity=0.268 Sum_probs=68.8
Q ss_pred CCcEEEEeCCCCceeecCCCCCCccHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCceecccCCCCC
Q 022339 143 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGT 222 (298)
Q Consensus 143 D~~llvvnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vhRLD~~T 222 (298)
+++|||+|||+|++|++.+. ...|+++.|. ...++++|||||++|
T Consensus 13 ~~~~lvlnKPaG~vs~~~~~-~~~tv~dll~----------------------------------~~~rl~~VgRLD~dT 57 (237)
T 2gml_A 13 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVN----------------------------------HSKRVFPIGRLDKDS 57 (237)
T ss_dssp CCCEEEEEECTTCBCCSSSS-CSSBHHHHSC----------------------------------CSSCCEEESCCCTTC
T ss_pred CCEEEEEECCCCCEeCCCCC-CCCCHHHHhh----------------------------------ccCCeeEecCCCCCC
Confidence 46899999999999998766 4568876442 113578999999999
Q ss_pred ceeEEEEcCHHHHHHHHHHHhcCeeceEEEEEEeeecCCC
Q 022339 223 SGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQS 262 (298)
Q Consensus 223 SGLlL~Ak~~~~~~~L~~~f~~~~i~K~YlAlv~G~~~~~ 262 (298)
|||||||+|..++..|.. ..+.|+|+|+|+|.|.+.++
T Consensus 58 SGLLLlT~dg~~a~~L~~--p~~~v~K~Y~a~V~G~~~~~ 95 (237)
T 2gml_A 58 QGLIFLTNHGDLVNKILR--AGNDHEKEYLVTVDKPITEE 95 (237)
T ss_dssp EEEEEEESCHHHHHHHHH--HHHHSCEEEEEEESSCCCHH
T ss_pred eeEEEEEcCHHHHHHHhC--ccCCCCEEEEEEEcccCCHH
Confidence 999999999999998876 46679999999999998643
No 10
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=98.88 E-value=2.2e-10 Score=88.14 Aligned_cols=75 Identities=19% Similarity=0.160 Sum_probs=57.2
Q ss_pred chHHHHHHhccCCcCHHHHHHHHHCCceEECCEEeccccccccCCCEEeeccccccccc-c-------ccCCCCeeeeec
Q 022339 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR-A-------EAEDIPLDIVYE 142 (298)
Q Consensus 71 ~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD~I~i~~~~~~~~~-~-------~~~~~~~~Ilye 142 (298)
+|||+||++.....||+.++++|++|.|+|||+++ ++++.|.+||.|.|...+..... . .+....+.++||
T Consensus 1 ~RLD~~L~~~~~~~sR~~~~~li~~G~V~VNg~~~-~~~~~v~~gd~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~lye 79 (92)
T 2k6p_A 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCA-KASKEVKAGDTISLHYLKGIEEYTILQIPALKNVPRKDTHLYIA 79 (92)
T ss_dssp CBHHHHSTTTTSCCCCCSSCCHHHHTCCEETTEEC-CTTCBCCTTCEEEECCSSCCEEEEECCCCCCSCCCSSSTTSSEE
T ss_pred ChHHHHHHHCCCCCCHHHHHHHHHCCcEEECCEEc-CCCCCcCCCCEEEEEeCCceEEEEEeccccccCCCHHHHHHHHH
Confidence 58999999864335999999999999999999998 79999999999999765422110 0 012234788999
Q ss_pred CCcE
Q 022339 143 DDNV 146 (298)
Q Consensus 143 D~~l 146 (298)
|.++
T Consensus 80 d~~~ 83 (92)
T 2k6p_A 80 PKTK 83 (92)
T ss_dssp ECCC
T ss_pred hcCC
Confidence 8765
No 11
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=98.84 E-value=2.3e-09 Score=88.32 Aligned_cols=58 Identities=28% Similarity=0.264 Sum_probs=50.6
Q ss_pred CCCccchHHHHHHhccCCcCHHHHHHHHHCCceEECCEEeccccccccCCCEEeecccc
Q 022339 66 TKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE 124 (298)
Q Consensus 66 ~~~~g~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD~I~i~~~~ 124 (298)
..++++|||+||...+...||+.++++|.+|.|+|||+++ ++++.|.+||+|.|....
T Consensus 4 ~~~~~~RLDk~L~~~~~~~SRs~a~~li~~G~V~VNG~~v-k~s~~V~~GD~I~I~~~~ 61 (133)
T 1dm9_A 4 KPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGN 61 (133)
T ss_dssp -CTTCCBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEEC-CTTCBCCTTCEEEEEETT
T ss_pred ccccchhHHHHHHHCCCCCCHHHHHHHHHCCcEEECCEEc-CCCCEeCCCCEEEEEeCC
Confidence 4467899999999874457999999999999999999998 899999999999997643
No 12
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=98.64 E-value=2.1e-08 Score=84.86 Aligned_cols=82 Identities=16% Similarity=0.109 Sum_probs=61.6
Q ss_pred ccchHHHHHHhccCCcCHHHHHHHHHCCceEECCEEeccccccccCCCEEeeccccccccccccCCCCeeeeecCCcEEE
Q 022339 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLV 148 (298)
Q Consensus 69 ~g~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD~I~i~~~~~~~~~~~~~~~~~~IlyeD~~llv 148 (298)
-++|||++|.+.....||++++++|..|.|.|||++++++++.|.+||.|.|......... +.-..+ .+
T Consensus 49 le~RLD~~L~~~g~~~SR~~ar~lI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~~~~~~~k-------l~~al~--~~-- 117 (159)
T 1c05_A 49 LESRLDNLVYRLGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVREKSRNLQV-------IKEALE--AN-- 117 (159)
T ss_dssp HHHBHHHHHHHTTSCSSHHHHHHHHHTTCEEETTEECCCSSCBCCTTCEEEECGGGSSCHH-------HHHHHH--TC--
T ss_pred HHHHHHHHHHHcCCcCCHHHHHHHHHCCCEEECCEEeCcCCcEeCCCCEEEEeCceehHHH-------HHHHHH--Hh--
Confidence 4579999999885457999999999999999999999889999999999999764221100 000001 12
Q ss_pred EeCCCCceeecCCC
Q 022339 149 VNKPAHMVVHPAPG 162 (298)
Q Consensus 149 vnKPaGl~v~~~~~ 162 (298)
+||+|.++...+.
T Consensus 118 -~~~~g~v~~d~~~ 130 (159)
T 1c05_A 118 -NYIPDYLSFDPEK 130 (159)
T ss_dssp -CCCCSSEEEETTT
T ss_pred -CCCCCeEEEecCC
Confidence 8999999885543
No 13
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=98.63 E-value=4.7e-09 Score=78.53 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=48.3
Q ss_pred CccchHHHHHHhccCCc-CHHHHHHHHHCCceEECCEEeccccccccCCCEEeecc
Q 022339 68 AGKLRLDAWISSRIDGI-SRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (298)
Q Consensus 68 ~~g~rLdk~L~~~~~~~-Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD~I~i~~ 122 (298)
.+++|||+||++. +.+ ||++++++|++|.|+|||++++++++.|.+||.|++..
T Consensus 18 ~~~~RLdk~L~~~-g~~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~gd~I~v~~ 72 (79)
T 1p9k_A 18 HPHVELCDLLKLE-GWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 72 (79)
T ss_dssp CSCCCHHHHHHHH-TSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEETT
T ss_pred CCCchHHHHHHHC-CCCCCHHHHHHHHHCCEEEECCEEecCCCCCCCCCCEEEECC
Confidence 4568999999987 544 99999999999999999999888999999999998865
No 14
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=98.61 E-value=1.8e-08 Score=88.96 Aligned_cols=81 Identities=21% Similarity=0.170 Sum_probs=61.8
Q ss_pred ccchHHHHHHhccCCcCHHHHHHHHHCCceEECCEEeccccccccCCCEEeeccccccccccccCCCCeeeeecCCcEEE
Q 022339 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLV 148 (298)
Q Consensus 69 ~g~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD~I~i~~~~~~~~~~~~~~~~~~IlyeD~~llv 148 (298)
.++|||+||.+.....||++++++|..|.|.|||++++++++.|.+||+|+|......... -..++.
T Consensus 97 le~RLD~~L~~~g~~~SR~~arqLI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~~~r~~~~-------------~~~~l~ 163 (209)
T 2vqe_D 97 LESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLEL-------------IRQNLE 163 (209)
T ss_dssp HHTBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECGGGTTCHH-------------HHHHHH
T ss_pred HHHHHHHHHHHhcCcCCHHHHHHHHHCCCEEECCEEeCcCCcCcCCCCEEEEcCcccchHH-------------HHHHHH
Confidence 3689999999874457999999999999999999999889999999999999764321110 012233
Q ss_pred Ee---CCCCceeecCCC
Q 022339 149 VN---KPAHMVVHPAPG 162 (298)
Q Consensus 149 vn---KPaGl~v~~~~~ 162 (298)
.| ||+|.++...+.
T Consensus 164 ~~~~~kp~g~l~~d~~~ 180 (209)
T 2vqe_D 164 AMKGRKVGPWLSLDVEG 180 (209)
T ss_dssp HTTTCCCCTTCCEETTT
T ss_pred hcCCCCCCCeEEEeccc
Confidence 34 899998876543
No 15
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=1.3e-07 Score=69.44 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=45.4
Q ss_pred cchHHHHHHhccCCc-CHHHHHHHHHCCceEECCEEeccccccccC--CCEEeec
Q 022339 70 KLRLDAWISSRIDGI-SRARVQSSIRSGLVSINGQVVSKVSHNVKG--GDMVNCT 121 (298)
Q Consensus 70 g~rLdk~L~~~~~~~-Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~--gD~I~i~ 121 (298)
..|||++|.+. +.+ ||++++++|..|.|+|||+++++|++.|.+ +|.|++.
T Consensus 7 ~~RLD~~l~~~-gla~SR~~A~~lI~~G~V~Vng~~v~kps~~V~~~~~d~I~~~ 60 (71)
T 2cqj_A 7 GRRLPTVLLKL-RMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWV 60 (71)
T ss_dssp EEEHHHHHHHT-TCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEES
T ss_pred HHHHHHHHHHh-CCcCCHHHHHHHHHCCcEEECCEEECCCCCCCCCCCCcEEEEE
Confidence 46999999998 455 999999999999999999999999999998 6888753
No 16
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=98.29 E-value=1.7e-07 Score=82.30 Aligned_cols=55 Identities=25% Similarity=0.245 Sum_probs=49.3
Q ss_pred ccchHHHHHHhccCCcCHHHHHHHHHCCceEECCEEeccccccccCCCEEeeccc
Q 022339 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123 (298)
Q Consensus 69 ~g~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD~I~i~~~ 123 (298)
.++|||+||.......||++++++|..|.|.|||++++++++.|++||+|+|...
T Consensus 93 le~RLD~~L~r~g~~~SR~~ArqLI~~G~V~VNG~~V~~ps~~Vk~GD~I~V~~~ 147 (205)
T 3r8n_D 93 LEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREK 147 (205)
T ss_dssp HHTBTTHHHHTTSSCSSHHHHHHHHHTTCCBSSSSBCCCTTCBCCTTBCCBCCSS
T ss_pred hHhhHHHHHHHhcchhHHHHHHHHHHCCCEEECCEEEccCCcCcCCCCEEEecCc
Confidence 3579999999874467999999999999999999999889999999999998764
No 17
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=98.19 E-value=6.2e-07 Score=78.54 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=48.3
Q ss_pred cchHHHHHHhccCCcCHHHHHHHHHCCceEECCEEeccccccccCCCEEeeccc
Q 022339 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123 (298)
Q Consensus 70 g~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD~I~i~~~ 123 (298)
.+|||++|.+.....||++++++|..|.|.|||++++++++.|.+||+|+|...
T Consensus 88 e~RLD~~L~r~g~a~SR~~ArqLI~~G~V~VNG~~V~~pS~~V~~gD~I~V~~~ 141 (201)
T 3bbn_D 88 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMARDE 141 (201)
T ss_dssp HSBTTTTTTTTTSSSSSHHHHHHHHTTCEEETTEECCCTTCBCCTTEEEEECSS
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHhCCcEEeCCEEEeecceecCCCCEEEEccc
Confidence 469999998874446999999999999999999999889999999999999754
No 18
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=98.17 E-value=1.2e-06 Score=80.83 Aligned_cols=55 Identities=16% Similarity=0.075 Sum_probs=49.5
Q ss_pred ccchHHHHHHhccCCcCHHHHHHHHHCCceEECC-E-EeccccccccCCCEEeeccc
Q 022339 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSING-Q-VVSKVSHNVKGGDMVNCTIS 123 (298)
Q Consensus 69 ~g~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNG-k-~v~~~~~~v~~gD~I~i~~~ 123 (298)
.++|||+||.+.....||++++++|++|+|+||| + +++++++.|.+||.|+|...
T Consensus 5 ~~~RLD~~L~~~g~~~SR~~a~~lI~~G~V~Vng~~~~v~kp~~~V~~~d~I~v~g~ 61 (291)
T 3hp7_A 5 PKERVDVLAYKQGLFETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTELKLKGE 61 (291)
T ss_dssp CEEEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTTCCBCCCTTCEEETTCCEEETTC
T ss_pred chhhHHHHHHHcCCcccHHHHHHHHHCCeEEECCeEEEEccCCCCCCCCCEEEEccc
Confidence 4689999999885557999999999999999999 8 78899999999999999754
No 19
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=98.03 E-value=2.1e-06 Score=73.89 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=46.8
Q ss_pred cchHHHHHHhccCCc-CHHHHHHHHHCCceEECCEEeccccccccCC--CEEeecc
Q 022339 70 KLRLDAWISSRIDGI-SRARVQSSIRSGLVSINGQVVSKVSHNVKGG--DMVNCTI 122 (298)
Q Consensus 70 g~rLdk~L~~~~~~~-Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~g--D~I~i~~ 122 (298)
.+|||++|.+. +.+ ||+.++++|..|.|.|||++++++++.|.+| |.|.|..
T Consensus 102 e~RLD~~L~~~-G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~~eD~I~v~~ 156 (180)
T 3j20_D 102 ERRLQTIVYKK-GLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYAR 156 (180)
T ss_dssp HTSHHHHHHHH-TSSSSHHHHHHHHHHTCCEESSSBCCCSSCCCCTGGGGCEECSS
T ss_pred hhhhhheeecC-cccCcHHHHHHHHHcCCeEECCEEeCCCCcccCCCCCCEEEEeC
Confidence 47999999887 445 9999999999999999999999999999999 8898854
No 20
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=97.95 E-value=4.1e-06 Score=72.19 Aligned_cols=52 Identities=15% Similarity=0.084 Sum_probs=45.1
Q ss_pred ccchHHHHHHhccCCc-CHHHHHHHHHCCceEECCEEeccccccccCCCEEeec
Q 022339 69 GKLRLDAWISSRIDGI-SRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121 (298)
Q Consensus 69 ~g~rLdk~L~~~~~~~-Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD~I~i~ 121 (298)
-.+|||.+|.+. +.+ ||++++++|..|.|.|||++++++++.|.+||.+.|.
T Consensus 105 le~RLD~vL~~~-G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~d~~~I~ 157 (181)
T 2xzm_D 105 MERRLQTRVFKL-NLANSIHHSRVLIRQRHIKVGKNLVNVPSFMVRTDSEKSID 157 (181)
T ss_dssp HTTBHHHHHHHT-TCSSSTTHHHHHTTTTCCEETTEECCCSCCBCCSTTSSCEE
T ss_pred hccchhHHHHhc-cccCCHHHHHHHHHCCEEEECCEEECCCCcCCCCCCceEEE
Confidence 357999999887 455 9999999999999999999999999999999854333
No 21
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=97.67 E-value=1.5e-05 Score=69.30 Aligned_cols=51 Identities=16% Similarity=0.089 Sum_probs=44.3
Q ss_pred cchHHHHHHhccCCcCHHHHHHHHHCCceEECCEEeccccccccCCC--EEee
Q 022339 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD--MVNC 120 (298)
Q Consensus 70 g~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD--~I~i 120 (298)
.+|||.+|.+..-.-||++++++|..|.|.|||++|++|++.|.+|+ .|.+
T Consensus 106 e~RLD~~L~r~G~a~Sr~~ArqLI~~GhV~VNG~~V~~Ps~~V~~g~ed~I~~ 158 (197)
T 3u5c_J 106 ERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDF 158 (197)
T ss_dssp TTSHHHHHHHSSTTSSHHHHHHHHHTSCCBSSSCBCCCTTCCCCSTTGGGCBC
T ss_pred HHHHHHHHHHccccCCHHHHHHHHHcCCEEECCEEeCCCccccCCCCccEEEE
Confidence 46999999988333499999999999999999999999999999995 5555
No 22
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=97.28 E-value=2.6e-06 Score=74.09 Aligned_cols=55 Identities=18% Similarity=0.084 Sum_probs=48.4
Q ss_pred CccchHHHHHHhccCCc-CHHHHHHHHHCCceEECCEEeccccccccCCCEEeeccc
Q 022339 68 AGKLRLDAWISSRIDGI-SRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123 (298)
Q Consensus 68 ~~g~rLdk~L~~~~~~~-Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD~I~i~~~ 123 (298)
--.+|||.+|.+. +.+ ||++++++|..|.|.|||++|++|++.|.+||++.|.+.
T Consensus 106 ~le~RLD~~L~r~-G~a~SR~~ArqlI~~GhV~VNG~~V~~Ps~~V~~gde~~I~~~ 161 (195)
T 3iz6_C 106 FLARRLQTLVFKA-GMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFS 161 (195)
T ss_dssp CTTSCCCSSCCCC-CCHHHHSCTTSHHHHHSTTTSCCCCCCCCCCCSSSCSSSSCSS
T ss_pred HHHhhhhHHHHhc-cccCCHHHHHHHHHcCCEEECCEEeCCCCcCcCCCCEEEEEec
Confidence 3457999999987 444 999999999999999999999999999999999888653
No 23
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.09 E-value=0.0011 Score=59.27 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=49.8
Q ss_pred CccchHHHHHHhccCC-cCHHHHHHHHHCCceEECCEEeccccccccCCCEEeecc
Q 022339 68 AGKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (298)
Q Consensus 68 ~~g~rLdk~L~~~~~~-~Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD~I~i~~ 122 (298)
.+...|.-||+.+++. .+++++++.+.+|.|+|||++++.+++.+..+|+|+|..
T Consensus 40 ~~~lPL~i~LRdrLgyA~t~rEar~Iv~~~~I~VdGKvr~d~~ypvG~mDVIsI~k 95 (243)
T 3j20_E 40 RTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPE 95 (243)
T ss_dssp TTCEEHHHHHHTTSCCCSSHHHHHHHHHHCSCEETTEECCCSSCEECTTCEEEETT
T ss_pred ccceeehhhhhhhhccccCHHHHHHHHHCCcEEECCEEeccccCCcccceEEEecc
Confidence 4567799999999875 689999999999999999999999999999999999964
No 24
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=96.83 E-value=0.0012 Score=61.64 Aligned_cols=72 Identities=21% Similarity=0.337 Sum_probs=55.0
Q ss_pred CcEEEEeCCCCceeecCCCCCCccHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCceecccCCCCCc
Q 022339 144 DNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 223 (298)
Q Consensus 144 ~~llvvnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vhRLD~~TS 223 (298)
+.+|+||||+|+-+| .+++.+.+.+. ..+.+..+.||-..|
T Consensus 25 ~Gil~vdKP~G~TS~--------dvv~~vr~~l~-------------------------------~kKvGH~GTLDP~At 65 (327)
T 1k8w_A 25 NGVLLLDKPQGMSSN--------DALQKVKRIYN-------------------------------ANRAGHTGALDPLAT 65 (327)
T ss_dssp CEEEEEEECTTCCHH--------HHHHHHHHHTT-------------------------------CSCEEESSCCCTTCE
T ss_pred CeEEEEECCCCCCHH--------HHHHHHHHhhc-------------------------------cceeccCCCCCCCCe
Confidence 469999999998765 47788877653 246788999999999
Q ss_pred eeEEEEcCHHHHHHHHHHHhcCeeceEEEEEEe-ee
Q 022339 224 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS-GV 258 (298)
Q Consensus 224 GLlL~Ak~~~~~~~L~~~f~~~~i~K~YlAlv~-G~ 258 (298)
|+|+++-.+.+ ++.+.+.. -.|+|.|.+. |.
T Consensus 66 GvL~i~~G~aT--Kl~~~l~~--~~K~Y~a~~~lG~ 97 (327)
T 1k8w_A 66 GMLPICLGEAT--KFSQYLLD--SDKRYRVIARLGQ 97 (327)
T ss_dssp EEEEEEEGGGG--GGTHHHHT--SCEEEEEEEEETE
T ss_pred eEEEEEECHHH--hHHHHhcc--CCcEEEEEEEECC
Confidence 99999998643 24444443 3899999986 54
No 25
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=96.73 E-value=0.0011 Score=61.35 Aligned_cols=72 Identities=22% Similarity=0.370 Sum_probs=55.1
Q ss_pred CcEEEEeCCCCceeecCCCCCCccHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCceecccCCCCCc
Q 022339 144 DNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 223 (298)
Q Consensus 144 ~~llvvnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vhRLD~~TS 223 (298)
+.+|++|||+|+-+| .+++.+.+.+. ..+.+..+.||-..|
T Consensus 3 ~Gil~vdKP~G~TS~--------~vv~~vrr~l~-------------------------------~kKvGH~GTLDP~At 43 (309)
T 1r3e_A 3 HGILVAYKPKGPTSH--------DVVDEVRKKLK-------------------------------TRKVGHGGTLDPFAC 43 (309)
T ss_dssp CEEEEEEECSSSCHH--------HHHHHHHHHTT-------------------------------CSCEEESSCCCTTCE
T ss_pred CeEEEEECCCCCCHH--------HHHHHHHHHhc-------------------------------cceecccccCCCCcc
Confidence 469999999998776 47788887653 246788999999999
Q ss_pred eeEEEEcCHHHHHHHHHHHhcCeeceEEEEEEe-ee
Q 022339 224 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS-GV 258 (298)
Q Consensus 224 GLlL~Ak~~~~~~~L~~~f~~~~i~K~YlAlv~-G~ 258 (298)
|+|+++-.+. .++.+.+.. -.|+|.|.+. |.
T Consensus 44 GvL~i~iG~a--TKl~~~l~~--~~K~Y~a~~~lG~ 75 (309)
T 1r3e_A 44 GVLIIGVNQG--TRILEFYKD--LKKVYWVKMRLGL 75 (309)
T ss_dssp EEEEEEEGGG--GGGGGGGTT--SCEEEEEEEEETE
T ss_pred eeEEEEECHH--HhHHHHhCc--cCcEEEEEEEECC
Confidence 9999999864 234444443 4899999986 54
No 26
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=96.71 E-value=0.0011 Score=62.11 Aligned_cols=72 Identities=22% Similarity=0.255 Sum_probs=55.1
Q ss_pred cCCcEEEEeCCCCceeecCCCCCCccHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCceecccCCCC
Q 022339 142 EDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKG 221 (298)
Q Consensus 142 eD~~llvvnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vhRLD~~ 221 (298)
-.+.+|+||||.|+-+| .+++.+.+.+. ..+.+..+.||-.
T Consensus 44 ~~~Gil~vdKP~g~tS~--------~vv~~vr~~~~-------------------------------~~KvGH~GTLDP~ 84 (334)
T 2aus_C 44 IQYGVINLDKPPGPTSH--------EVVAWIKRILN-------------------------------LEKAGHGGTLDPK 84 (334)
T ss_dssp HHTEEEEEEECSSSCHH--------HHHHHHHHHTT-------------------------------CSCEEESSCCCTT
T ss_pred ccCcEEEEECCCCCCHH--------HHHHHHHHHhC-------------------------------cceeccccccCCc
Confidence 34679999999998765 47778877653 2467889999999
Q ss_pred CceeEEEEcCHHHHHHHHHHHhcCeeceEEEEEEe
Q 022339 222 TSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS 256 (298)
Q Consensus 222 TSGLlL~Ak~~~~~~~L~~~f~~~~i~K~YlAlv~ 256 (298)
.||+|+++-.+. . ++.+.+.. ..|+|.|.+.
T Consensus 85 atGvL~v~~g~a-T-k~~~~l~~--~~K~Y~~~~~ 115 (334)
T 2aus_C 85 VSGVLPVALERA-T-RVVQALLP--AGKEYVALMH 115 (334)
T ss_dssp CEEEEEEEEGGG-G-GGGGGGTT--CCEEEEEEEE
T ss_pred cceeEEEEeChh-h-hhHHHhcc--cCcEEEEEEE
Confidence 999999999753 2 44444443 5899999986
No 27
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=96.70 E-value=0.0021 Score=56.38 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=47.7
Q ss_pred CccchHHHHHHhccCC-cCHHHHHHHHHCCceEECCEEeccccccccCCCEEee
Q 022339 68 AGKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120 (298)
Q Consensus 68 ~~g~rLdk~L~~~~~~-~Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD~I~i 120 (298)
.+...|.-||+.+++. .+++++++.+.+|.|+|||++++.+.+.+..+|+|++
T Consensus 5 ~eslPL~i~LRdrLgyA~t~rEarkIv~~~~I~VDGKvr~d~~ypvG~mDVIsI 58 (213)
T 3kbg_A 5 DQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI 58 (213)
T ss_dssp CSCEEHHHHHHHHHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTCEEEE
T ss_pred hhceeeHHHHhhhhcccccHHHHHHHHHCCCEEECCEEecccCCCccceeEEEe
Confidence 3566788899988764 6899999999999999999999999999999999999
No 28
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=96.55 E-value=0.0018 Score=60.19 Aligned_cols=73 Identities=22% Similarity=0.356 Sum_probs=55.8
Q ss_pred CCcEEEEeCCCCceeecCCCCCCccHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCceecccCCCCC
Q 022339 143 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGT 222 (298)
Q Consensus 143 D~~llvvnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vhRLD~~T 222 (298)
.+.+|++|||.|+-+| .+++.+.+.+. ..+.+..+.||-..
T Consensus 5 ~~Gil~vdKP~G~TS~--------dvv~~vrr~l~-------------------------------~kKvGH~GTLDP~A 45 (316)
T 1sgv_A 5 GPGIVVIDKPAGMTSH--------DVVGRCRRIFA-------------------------------TRRVGHAGTLDPMA 45 (316)
T ss_dssp CSEEEEEEECTTCCHH--------HHHHHHHHHTT-------------------------------CSCEEESSCCCTTC
T ss_pred CCeEEEEECCCCCCHH--------HHHHHHHHHhc-------------------------------cccccccccCCCCC
Confidence 4579999999998765 47888887653 24678899999999
Q ss_pred ceeEEEEcCHHHHHHHHHHHhcCeeceEEEEEEe-ee
Q 022339 223 SGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS-GV 258 (298)
Q Consensus 223 SGLlL~Ak~~~~~~~L~~~f~~~~i~K~YlAlv~-G~ 258 (298)
||+|+++-.+. .++.+.+.. -.|+|.|.+. |.
T Consensus 46 tGvL~i~iG~a--TKl~~~l~~--~~K~Y~~~~~lG~ 78 (316)
T 1sgv_A 46 TGVLVIGIERA--TKILGLLTA--APKSYAATIRLGQ 78 (316)
T ss_dssp EEEEEEEEGGG--GGGGGGTTT--SCEEEEEEEEETE
T ss_pred eEEEEEEECHH--HhHHHHhCc--CCcEEEEEEEECC
Confidence 99999999864 234444433 4999999986 54
No 29
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=96.46 E-value=0.0019 Score=61.10 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=55.2
Q ss_pred cCCcEEEEeCCCCceeecCCCCCCccHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCceecccCCCC
Q 022339 142 EDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKG 221 (298)
Q Consensus 142 eD~~llvvnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vhRLD~~ 221 (298)
-.+.+|+||||+|+-+| .+++.+.+.+. ..+.+..+-||-.
T Consensus 64 ~~~Gil~vdKP~G~TS~--------~vv~~vr~~l~-------------------------------~~KvGH~GTLDP~ 104 (357)
T 2apo_A 64 IKYGVVVVDKPRGPTSH--------EVSTWVKKILN-------------------------------LDKAGHGGTLDPK 104 (357)
T ss_dssp HHTEEEEEEECSSSCHH--------HHHHHHHHHTT-------------------------------CSCEEESSCCCTT
T ss_pred ccCcEEEEECCCCCCHH--------HHHHHHHHHhC-------------------------------ccccccccccCCC
Confidence 34679999999998765 47788877653 2467889999999
Q ss_pred CceeEEEEcCHHHHHHHHHHHhcCeeceEEEEEEe
Q 022339 222 TSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS 256 (298)
Q Consensus 222 TSGLlL~Ak~~~~~~~L~~~f~~~~i~K~YlAlv~ 256 (298)
.||+|+++-.+. . ++.+.+.. ..|+|.|.+.
T Consensus 105 AtGvL~v~~G~a-T-k~~~~l~~--~~K~Y~~~~~ 135 (357)
T 2apo_A 105 VTGVLPVALERA-T-KTIPMWHI--PPKEYVCLMH 135 (357)
T ss_dssp CEEEEEEEEGGG-G-GGGGGTTS--SCEEEEEEEE
T ss_pred ceeEEEEEeCHH-H-hHHHHhcc--CCcEEEEEEE
Confidence 999999999753 3 44444443 6899999986
No 30
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=96.17 E-value=0.005 Score=58.88 Aligned_cols=76 Identities=21% Similarity=0.283 Sum_probs=56.0
Q ss_pred ecCCcEEEEeCCCCceeecCCCCCCccHHHHHHhhcCCCccccccccccccccccccccccccccCCCCCCceecccCCC
Q 022339 141 YEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDK 220 (298)
Q Consensus 141 yeD~~llvvnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vhRLD~ 220 (298)
|-.+.+|+||||.|+-+| .+++.+.+.+. ..+.+..+-||-
T Consensus 56 ~~~~Gil~ldKP~G~TS~--------dvv~~vrr~l~-------------------------------~kKvGH~GTLDP 96 (400)
T 3u28_A 56 YISSGVINLDKPSNPSSH--------EVVAWIKRILR-------------------------------CEKTGHSGTLDP 96 (400)
T ss_dssp HHHTEEEEEEECSSSCHH--------HHHHHHHHHHT-------------------------------CSCEEESSCCCT
T ss_pred hccCcEEEEECCCCCCHH--------HHHHHHHHHhC-------------------------------cCcccccCCCCC
Confidence 344689999999998876 47777877653 246788999999
Q ss_pred CCceeEEEEcCHHHHHHHHHHHhcCeeceEEEEEEe-eec
Q 022339 221 GTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS-GVP 259 (298)
Q Consensus 221 ~TSGLlL~Ak~~~~~~~L~~~f~~~~i~K~YlAlv~-G~~ 259 (298)
..||+|+++-.+. .+ +.+.+.. -.|+|.|.+. |..
T Consensus 97 ~AtGvL~v~iG~a-TK-l~~~l~~--~~K~Y~a~~~lG~~ 132 (400)
T 3u28_A 97 KVTGCLIVCIDRA-TR-LVKSQQG--AGKEYVCIVRLHDA 132 (400)
T ss_dssp TCEEEEEEEEGGG-GG-GHHHHHH--SCEEEEEEEEESSC
T ss_pred CCeEEEEEEEChH-Hh-HhHHhcC--CCcEEEEEEEeCCC
Confidence 9999999998753 22 3333332 4899999986 543
No 31
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=94.75 E-value=0.028 Score=50.75 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=52.4
Q ss_pred ccchHHHHHHhccCC-cCHHHHHHHHHCCceEECCEEeccccccccCCCEEeeccccccccccccCCCCeeeeecCCcEE
Q 022339 69 GKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVL 147 (298)
Q Consensus 69 ~g~rLdk~L~~~~~~-~Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD~I~i~~~~~~~~~~~~~~~~~~IlyeD~~ll 147 (298)
+...|.-||+..++. .+.+++++.+.+|.|+|||++.+...+.+---|+|+|.... ..+++||.....+
T Consensus 40 eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~kt~----------e~fRll~D~kGrf 109 (265)
T 3iz6_D 40 ECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTG----------ENYRLLYDTKGRF 109 (265)
T ss_dssp ---CHHHHHHHHHTTSSCSSSTHHHHHTTCCEETTEECCCTTCCCCTTCEEECCSSC----------CEEEEEECTTSCE
T ss_pred hheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCcEEEEEEEcCCC----------CEEEEEECCCCcE
Confidence 456788899988875 57789999999999999999998777777667999995422 2345666655544
Q ss_pred EEe
Q 022339 148 VVN 150 (298)
Q Consensus 148 vvn 150 (298)
+++
T Consensus 110 ~l~ 112 (265)
T 3iz6_D 110 RLQ 112 (265)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 32
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=94.68 E-value=0.069 Score=48.05 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=46.3
Q ss_pred CccchHHHHHHhccCC-cCHHHHHHHHHC--CceEECCEEeccccccccCCCEEeecc
Q 022339 68 AGKLRLDAWISSRIDG-ISRARVQSSIRS--GLVSINGQVVSKVSHNVKGGDMVNCTI 122 (298)
Q Consensus 68 ~~g~rLdk~L~~~~~~-~Sr~~~~~lI~~--G~V~VNGk~v~~~~~~v~~gD~I~i~~ 122 (298)
.+...|.-||+..++. .+.+++++.|.+ |.|+|||++.+...+.+---|+|+|..
T Consensus 39 ~eslPL~i~LRd~LkyA~t~rEak~Il~q~~~~VkVDGkvr~D~~~PvG~MDVIsI~k 96 (260)
T 2xzm_W 39 RESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIEK 96 (260)
T ss_dssp SSCEEHHHHHTTTTCSCCSHHHHHHHTTSTTCCEEETTEECCCTTCEECTTCEEEEGG
T ss_pred ceeehhHhhhhhhhccccchhHHHHHHhccCCeEEECCEEeccCCCCCcEEEEEeEcC
Confidence 4567799999999874 689999999999 999999999877777776679998854
No 33
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=94.02 E-value=0.029 Score=50.54 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=46.8
Q ss_pred CccchHHHHHHhccCC-cCHHHHHHHHHCCceEECCEEeccccccccCCCEEeecc
Q 022339 68 AGKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (298)
Q Consensus 68 ~~g~rLdk~L~~~~~~-~Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD~I~i~~ 122 (298)
.+...|.-||+..++. .+.+++++.+.+|.|+|||++.+...+.+---|+|+|..
T Consensus 39 ~eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~k 94 (261)
T 3u5c_E 39 RESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDA 94 (261)
T ss_dssp GGEEEHHHHHHHTTCCCSSSHHHHHHHTTTCEEETTBCCCCTTCEEETTCEEEETT
T ss_pred hhheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCceEEEEEEcC
Confidence 3456799999998875 578999999999999999999887777777779999954
No 34
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=90.34 E-value=0.052 Score=52.28 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=0.0
Q ss_pred cchHHHHHHhccCCcCHHHHHHHHHCCceEECCEEeccccccccCCCEE
Q 022339 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118 (298)
Q Consensus 70 g~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD~I 118 (298)
+..|.++|...--.-|+++++++|.+|.|+|||.+++..+..+.++|.+
T Consensus 352 ~i~l~~lL~~agl~~SksEARRlI~~GgV~VNgekv~d~~~~l~~~dl~ 400 (420)
T 1jil_A 352 TTNIVEVLIETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKI 400 (420)
T ss_dssp -------------------------------------------------
T ss_pred cccHHHHHHHcCCccCHHHHHHHHHhCCEEECCEEecccccccCccccc
Confidence 4578888886622349999999999999999999998888888887654
No 35
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=90.01 E-value=0.35 Score=46.62 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=39.8
Q ss_pred cchHHHHHHhccCCcCHHHHHHHHHCCceEECCEEeccccccccCCC
Q 022339 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116 (298)
Q Consensus 70 g~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD 116 (298)
+..|.++|...--.-|+++++++|.+|.|+|||.+++.++..+..++
T Consensus 368 ~~~~~~~l~~~~l~~S~~earr~i~~ggv~vn~~~v~d~~~~~~~~~ 414 (432)
T 1h3f_A 368 RIWVARLFTLAGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSR 414 (432)
T ss_dssp EEEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCEEECSS
T ss_pred cCcHHHHHHHhCCcccHHHHHHHHHhCCEEECCEEecCccceecCCC
Confidence 55788888876335699999999999999999999988888887765
No 36
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=89.23 E-value=0.81 Score=32.88 Aligned_cols=52 Identities=23% Similarity=0.262 Sum_probs=36.2
Q ss_pred CccchHHHHHHhccCCcCHHHHHHHHHCC--ceEECCEEeccccccccCCCEEeecc
Q 022339 68 AGKLRLDAWISSRIDGISRARVQSSIRSG--LVSINGQVVSKVSHNVKGGDMVNCTI 122 (298)
Q Consensus 68 ~~g~rLdk~L~~~~~~~Sr~~~~~lI~~G--~V~VNGk~v~~~~~~v~~gD~I~i~~ 122 (298)
.++.++..++.... ... ..+++++..+ .|.|||+.+ ..+..|+.||+|.|..
T Consensus 23 ~~~~tv~~ll~~L~-~~~-p~~~~~l~~~~~~v~vN~~~v-~~~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 23 ADFPTVEALRQHMA-AQS-DRWALALEDGKLLAAVNQTLV-SFDHPLTDGDEVAFFP 76 (81)
T ss_dssp SCCSBHHHHHHHHH-TTC-HHHHHHHCCTTCEEEETTEEC-CTTCBCCTTCEEEEEC
T ss_pred CCCCCHHHHHHHHH-HHC-hhHHHHhcCCCEEEEECCEEC-CCCCCCCCCCEEEEeC
Confidence 34556777766542 111 3566777555 488999998 4789999999998843
No 37
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=88.96 E-value=0.25 Score=47.65 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=37.3
Q ss_pred hHHHHHHhccCCcCHHHHHHHHHCCceEECCEEeccccccccCCC
Q 022339 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116 (298)
Q Consensus 72 rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD 116 (298)
.|-++|...--.-|+++++++|.+|.|+|||.+++.++..+..+|
T Consensus 357 ~~~~ll~~~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~ 401 (432)
T 2jan_A 357 GIVDLLVASGLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQSSD 401 (432)
T ss_dssp SHHHHHHHHTSCSSHHHHHHHHTTTCEEESSCEECCTTCCCCGGG
T ss_pred hHHHHHHHhCCcccHHHHHHHHHhCCEEECCEEccChhcccChhh
Confidence 688888776324599999999999999999999988887777653
No 38
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=83.99 E-value=0.21 Score=48.10 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred cchHHHHHHhccCCcCHHHHHHHHHCCceEECCEEeccccccccCCCE
Q 022339 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117 (298)
Q Consensus 70 g~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD~ 117 (298)
+..|.++|...--.-|+++++++|.+|.|+|||.+++.++..+..+|.
T Consensus 351 ~~~~~~~l~~~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~~ 398 (419)
T 2ts1_A 351 DVPLVELLVSAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHR 398 (419)
T ss_dssp ------------------------------------------------
T ss_pred cccHHHHHHHhCCCCCHHHHHHHHHhCCEEECCEEecCcccccChhhc
Confidence 346777887652245999999999999999999999888887876654
No 39
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=81.99 E-value=1.4 Score=36.90 Aligned_cols=37 Identities=11% Similarity=-0.099 Sum_probs=30.1
Q ss_pred cchHHHHHHhccCCcCHHHHHHHHHCCceEECCEEec
Q 022339 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVS 106 (298)
Q Consensus 70 g~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~ 106 (298)
+..|-++|...--.-|+++++++|.+|.|+|||.++.
T Consensus 49 g~~ivdlLv~aGLa~SKsEARRlI~qGGv~VNg~kv~ 85 (164)
T 2ktl_A 49 DKTFSKVLWSAGLVASKSEGQRIINNNGAYVGSRPGV 85 (164)
T ss_dssp SCSHHHHHHHHTSCSTHHHHHHHHHHTCEEEEECCSC
T ss_pred CCcHHHHHHHhCcccCHHHHHHHHHhCCEEECCEecc
Confidence 5568888877622459999999999999999998773
No 40
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=78.91 E-value=0.24 Score=37.98 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=36.7
Q ss_pred CccchHHHHHHhccCCcCHHHHHHHHHCCceEECCEEeccccccccCCCEEeeccc
Q 022339 68 AGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123 (298)
Q Consensus 68 ~~g~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD~I~i~~~ 123 (298)
.+|.++...|... + +....-+=-+....|-|||+.+ ..+..|+.||+|+|+..
T Consensus 33 ~~g~TV~daI~~~-g-i~~~~peIdl~~~~V~Vng~~v-~~d~~L~dGDRVEIyrp 85 (97)
T 2hj1_A 33 DEGITVQTAITQS-G-ILSQFPEIDLSTNKIGIFSRPI-KLTDVLKEGDRIEIYRP 85 (97)
T ss_dssp ETTCBHHHHHHHH-T-HHHHCTTCCTTTSEEEEEECSC-CTTCBCCTTCEEEECCC
T ss_pred CCCCcHHHHHHHc-C-CCccCCcccccccEEEEcCEEC-CCCccCCCCCEEEEEec
Confidence 3667888888875 3 3221100012246799999999 59999999999999864
No 41
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=76.03 E-value=0.65 Score=33.20 Aligned_cols=50 Identities=10% Similarity=0.158 Sum_probs=32.9
Q ss_pred cchHHHHHHhccCCcCHHHHHHHHHCCceEECCEEeccccccccCCCEEeecc
Q 022339 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (298)
Q Consensus 70 g~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD~I~i~~ 122 (298)
+.++..++...- ..+ .+.+++..-.|.|||+.+...+..|+.||+|.+..
T Consensus 20 ~~tv~~ll~~L~-~~~--~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 20 ANDLKELRAILQ-EKE--GLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLLP 69 (74)
T ss_dssp CSSHHHHHHHHH-TCT--TTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEEC
T ss_pred CCcHHHHHHHHH-HCc--CHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEEC
Confidence 345555555431 111 23344566788999998556889999999998854
No 42
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=74.44 E-value=3.8 Score=36.02 Aligned_cols=41 Identities=20% Similarity=0.118 Sum_probs=30.7
Q ss_pred HCCceEECCEEecccccccc-CCCEEeeccccccccccccCCCCeeeeecCCcEEEE
Q 022339 94 RSGLVSINGQVVSKVSHNVK-GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVV 149 (298)
Q Consensus 94 ~~G~V~VNGk~v~~~~~~v~-~gD~I~i~~~~~~~~~~~~~~~~~~IlyeD~~llvv 149 (298)
.+|.|+|||++++ ....|+ .||.|.|.. +.+.+..++++++
T Consensus 133 ~ngtvyvNg~~i~-~~~~L~~~GD~I~ig~--------------~~~~~~~~~l~i~ 174 (238)
T 1wv3_A 133 KNTDVYINYELQE-QLTNKAYIGDHIYVEG--------------IWLEVQADGLNVL 174 (238)
T ss_dssp TTCCEEETTEECC-SSEEEEETTCEEEETT--------------EEEEECSSEEEEE
T ss_pred CCCCEEECCEEec-cceeccCCcCEEEECC--------------EEEEEECCEEEEE
Confidence 3788999999994 566799 999999843 3455666676663
No 43
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=73.33 E-value=4.5 Score=32.03 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=20.9
Q ss_pred CceEECCEEeccccccccCCCEEeec
Q 022339 96 GLVSINGQVVSKVSHNVKGGDMVNCT 121 (298)
Q Consensus 96 G~V~VNGk~v~~~~~~v~~gD~I~i~ 121 (298)
..++|||++++ ....|+.||+|.+-
T Consensus 90 ngt~VNG~~V~-~~~~L~~GD~I~lG 114 (124)
T 3fm8_A 90 TRTFVNGSSVS-SPIQLHHGDRILWG 114 (124)
T ss_dssp CCEEETTEECC-SCEEECTTCEEEET
T ss_pred CCEEECCEEcC-CcEECCCCCEEEEC
Confidence 46999999995 55789999999873
No 44
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=71.68 E-value=3.1 Score=29.41 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=21.5
Q ss_pred ceEECCEEeccccccccCCCEEeecc
Q 022339 97 LVSINGQVVSKVSHNVKGGDMVNCTI 122 (298)
Q Consensus 97 ~V~VNGk~v~~~~~~v~~gD~I~i~~ 122 (298)
.|.|||+.+. .+..|+.||+|.|..
T Consensus 48 ~v~vNg~~v~-~~~~L~~gD~V~i~p 72 (77)
T 2q5w_D 48 QVAVNEEFVQ-KSDFIQPNDTVALIP 72 (77)
T ss_dssp EEEETTEEEC-TTSEECTTCEEEEEC
T ss_pred EEEECCEECC-CCCCcCCCCEEEEEC
Confidence 5899999994 689999999999853
No 45
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=71.47 E-value=2.3 Score=30.58 Aligned_cols=44 Identities=23% Similarity=0.399 Sum_probs=32.5
Q ss_pred ccchHHHHHHhccCCcCHHHHHHHHHCCceEECCEEeccccccccCCCEEeecc
Q 022339 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (298)
Q Consensus 69 ~g~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD~I~i~~ 122 (298)
++.++..+|... . ++ ...=.|.|||+.+ ..+..|+.||+|.|..
T Consensus 29 ~~~Tv~dLl~~L-~-~~-------~~~v~VavNg~~v-~~~~~L~dGD~V~i~p 72 (77)
T 1rws_A 29 EGMKVRDILRAV-G-FN-------TESAIAKVNGKVV-LEDDEVKDGDFVEVIP 72 (77)
T ss_dssp SSCCHHHHHHTT-T-CS-------SCSSCEEETTEEE-CSSSCCCSSCCCBCSC
T ss_pred CCCcHHHHHHHh-C-CC-------CcCEEEEECCEEC-CCCCCcCCCCEEEEEc
Confidence 456899998875 3 33 1122589999999 4679999999998854
No 46
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=69.42 E-value=3.7 Score=29.97 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=22.2
Q ss_pred CceEECCEEeccccccccCCCEEeecc
Q 022339 96 GLVSINGQVVSKVSHNVKGGDMVNCTI 122 (298)
Q Consensus 96 G~V~VNGk~v~~~~~~v~~gD~I~i~~ 122 (298)
-.|.|||+.+ ..+..|+.||+|.+..
T Consensus 59 ~~v~VN~~~v-~~~~~l~~gDeV~i~P 84 (89)
T 3po0_A 59 INVLRNGEAA-ALGEATAAGDELALFP 84 (89)
T ss_dssp SEEEETTEEC-CTTSBCCTTCEEEEEC
T ss_pred EEEEECCEEC-CCCcccCCCCEEEEEC
Confidence 3688999999 4789999999999854
No 47
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=68.00 E-value=6.6 Score=28.84 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=21.3
Q ss_pred ceEECCEEecc---ccccccCCCEEeecc
Q 022339 97 LVSINGQVVSK---VSHNVKGGDMVNCTI 122 (298)
Q Consensus 97 ~V~VNGk~v~~---~~~~v~~gD~I~i~~ 122 (298)
.|.|||+.+.. .+..|+.||+|.|..
T Consensus 60 ~v~VN~~~v~~~~~~~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 60 NIYVNDEDVRFSGGLATAIADGDSVTILP 88 (93)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEEE
T ss_pred EEEECCEEccCcCCCCcCCCCCCEEEEEC
Confidence 57899999853 588899999998854
No 48
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=63.83 E-value=5.6 Score=27.92 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=31.9
Q ss_pred ccchHHHHHHhccCCcCHHHHHHHHHCCceEECCEEeccccccccCCCEEeecc
Q 022339 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (298)
Q Consensus 69 ~g~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD~I~i~~ 122 (298)
++.++..+|... . +.. ..=.|.+||..+. .+..|+.||+|.+..
T Consensus 22 ~~~tv~~Ll~~l-~-~~~-------~~v~vavN~~~v~-~~~~L~~gD~V~ii~ 65 (70)
T 1ryj_A 22 APRRIKDVLGEL-E-IPI-------ETVVVKKNGQIVI-DEEEIFDGDIIEVIR 65 (70)
T ss_dssp SCCBHHHHHHHT-T-CCT-------TTEEEEETTEECC-TTSBCCTTCEEEEEE
T ss_pred CCCcHHHHHHHh-C-CCC-------CCEEEEECCEECC-CcccCCCCCEEEEEe
Confidence 457899999876 3 331 1114889999994 677999999999853
No 49
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=62.37 E-value=6.2 Score=27.08 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=31.5
Q ss_pred ccchHHHHHHhccCCcCHHHHHHHHHCCceEECCEEecc---ccccccCCCEEeecc
Q 022339 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSK---VSHNVKGGDMVNCTI 122 (298)
Q Consensus 69 ~g~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~---~~~~v~~gD~I~i~~ 122 (298)
++.++..+|... . +.+ ..=.|.|||+.+.+ .+..|+.||+|.|..
T Consensus 12 ~~~tv~~ll~~l-~-~~~-------~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 12 EGKTLKEVLEEM-G-VEL-------KGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp TTCCHHHHHHHH-T-BCG-------GGEEEEETTEEEEGGGCCCCCCCTTCEEEEEE
T ss_pred CCCcHHHHHHHc-C-CCC-------CcEEEEECCEECCccccCCcCCCCCCEEEEEe
Confidence 456888888876 3 442 11258899999853 247899999999853
No 50
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=61.06 E-value=6.1 Score=28.70 Aligned_cols=25 Identities=20% Similarity=0.586 Sum_probs=21.5
Q ss_pred eEECCEEeccccccccCCCEEeeccc
Q 022339 98 VSINGQVVSKVSHNVKGGDMVNCTIS 123 (298)
Q Consensus 98 V~VNGk~v~~~~~~v~~gD~I~i~~~ 123 (298)
.+|||+.+ ..++.|+.||+|+|...
T Consensus 44 AkVNG~~v-~L~~~L~~gd~VeIit~ 68 (78)
T 3hvz_A 44 AKVDGRIV-PIDYKVKTGEIIDVLTT 68 (78)
T ss_dssp EEETTEEE-CTTCBCCTTCBEEEEEC
T ss_pred EEECCEEc-CCCcccCCCCEEEEEcc
Confidence 57899999 58999999999998653
No 51
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=59.97 E-value=7.3 Score=28.92 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=32.3
Q ss_pred Ccc-chHHHHHHhccCCcCHHHHHHHHHCCceEECCEEeccc---cccccCCCEEeecc
Q 022339 68 AGK-LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKV---SHNVKGGDMVNCTI 122 (298)
Q Consensus 68 ~~g-~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~~---~~~v~~gD~I~i~~ 122 (298)
.++ .+|..+|..+ . +.. ..=.|.|||+.+.+. +..|+.||+|+|..
T Consensus 33 ~~~~~Tv~dLL~~L-~-~~~-------~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 33 KKDTGTIQDLLASY-Q-LEN-------KIVIVERNKEIIGKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp SSSCCBHHHHHHHT-T-CTT-------SCCEEEETTEEECGGGTTTSBCCSSSEEEEEE
T ss_pred CCCCCcHHHHHHHh-C-CCC-------CCEEEEECCEECChhhcCCcCCCCCCEEEEEc
Confidence 344 7899999876 3 331 122478999998543 57899999999853
No 52
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=59.36 E-value=4.4 Score=28.97 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=32.7
Q ss_pred ccchHHHHHHhccCCcCHHHHHHHHHCCceEECCEEeccc---cccccCCCEEeecc
Q 022339 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKV---SHNVKGGDMVNCTI 122 (298)
Q Consensus 69 ~g~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~~---~~~v~~gD~I~i~~ 122 (298)
++.+|..+|.+. + +.. +.=.|.+||..+.+. +..|+.||.|+|..
T Consensus 13 ~~~Tl~~LL~~l-~-~~~-------~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 13 QSASVAALMTEL-D-CTG-------GHFAVALNYDVVPRGKWDETPVTAGDEIEILT 60 (73)
T ss_dssp CCSBHHHHHHHT-T-CCS-------SSCEEEESSSEECHHHHTTCBCCTTCEEEEEC
T ss_pred CCCcHHHHHHHc-C-CCC-------CcEEEEECCEECChHHcCcccCCCCCEEEEEc
Confidence 567899999876 3 442 112578999998543 57899999999854
No 53
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=58.46 E-value=9.6 Score=32.16 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.5
Q ss_pred CceEECCEEeccccccccCCCEEee
Q 022339 96 GLVSINGQVVSKVSHNVKGGDMVNC 120 (298)
Q Consensus 96 G~V~VNGk~v~~~~~~v~~gD~I~i 120 (298)
..++|||++++ ....|+.||+|.+
T Consensus 140 a~t~VNG~~I~-~~~~L~~GDrI~l 163 (184)
T 4egx_A 140 ADTYVNGKKVT-EPSILRSGNRIIM 163 (184)
T ss_dssp CCEEETTEECC-SCEECCTTCEEEE
T ss_pred CeEEEcCEEcc-ccEEcCCCCEEEE
Confidence 46999999995 5678999999977
No 54
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=57.69 E-value=4.8 Score=29.17 Aligned_cols=46 Identities=24% Similarity=0.383 Sum_probs=33.0
Q ss_pred ccchHHHHHHhccCCcCHHHHHHHHHCCceEECCEEeccc---cccccCCCEEeecc
Q 022339 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKV---SHNVKGGDMVNCTI 122 (298)
Q Consensus 69 ~g~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~~---~~~v~~gD~I~i~~ 122 (298)
++.+|..+|..+ + +.+ -+.=.|.|||..+.+. +..|+.||.|+|..
T Consensus 16 ~~~Tl~~LL~~l-~-~~~------~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 16 ESLNVTELLSAL-K-VAQ------AEYVTVELNGEVLEREAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp SCEEHHHHHHHH-T-CSC------TTTCCEEETTEECCTTHHHHCEECSSBCEEECC
T ss_pred CCCcHHHHHHHc-C-CCC------CCcEEEEECCEECChHHcCcccCCCCCEEEEEe
Confidence 467899999876 3 441 1122588999998544 47899999999854
No 55
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=57.57 E-value=5 Score=29.98 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.4
Q ss_pred ceEECCEEeccccccccCCCEEeecc
Q 022339 97 LVSINGQVVSKVSHNVKGGDMVNCTI 122 (298)
Q Consensus 97 ~V~VNGk~v~~~~~~v~~gD~I~i~~ 122 (298)
.|.|||+.+ ..+..|+.||+|.|..
T Consensus 69 ~v~VNg~~v-~~~~~L~dGDeV~i~p 93 (98)
T 1vjk_A 69 NIAVNGRYV-SWDEELKDGDVVGVFP 93 (98)
T ss_dssp EEEETTBCC-CTTCBCCTTCEEEEES
T ss_pred EEEECCEEC-CCCCCCCCCCEEEEEC
Confidence 588999998 4789999999998843
No 56
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=57.41 E-value=5.4 Score=27.54 Aligned_cols=46 Identities=22% Similarity=0.284 Sum_probs=31.8
Q ss_pred CccchHHHHHHhccCCcCHHHHHHHHHCCceEECCEEeccc---cccccCCCEEeecc
Q 022339 68 AGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKV---SHNVKGGDMVNCTI 122 (298)
Q Consensus 68 ~~g~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~~---~~~v~~gD~I~i~~ 122 (298)
.++.++..+|... . +.+ ..=.|.|||+.+.+. +..|+.||+|.|..
T Consensus 13 ~~~~tv~~ll~~l-~-~~~-------~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 13 AAGQTVHELLEQL-D-QRQ-------AGAALAINQQIVPREQWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp CTTCCHHHHHHHH-T-CCC-------SSEEEEETTEEECHHHHTTCCCCTTEEECEEE
T ss_pred CCCCcHHHHHHHc-C-CCC-------CCEEEEECCEECCchhcCCcCCCCCCEEEEEe
Confidence 3456888888875 3 331 111478999998532 67899999999853
No 57
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=55.47 E-value=20 Score=25.76 Aligned_cols=25 Identities=16% Similarity=0.465 Sum_probs=20.7
Q ss_pred ceEECCEEecc---ccccccCCCEEeec
Q 022339 97 LVSINGQVVSK---VSHNVKGGDMVNCT 121 (298)
Q Consensus 97 ~V~VNGk~v~~---~~~~v~~gD~I~i~ 121 (298)
.|.|||+.+.. .+..|+.||+|.|.
T Consensus 57 ~v~vN~~~v~~~~~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 57 IILVNGNNITSMKGLDTEIKDDDKIDLF 84 (90)
T ss_dssp EEEESSSBGGGTCSSSCBCCTTCEEEEE
T ss_pred EEEECCEEccccCCCCcCCCCCCEEEEe
Confidence 58899998842 67889999999884
No 58
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=53.57 E-value=9.1 Score=31.19 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=21.2
Q ss_pred CCceEECCEEeccccccccCCCEEeec
Q 022339 95 SGLVSINGQVVSKVSHNVKGGDMVNCT 121 (298)
Q Consensus 95 ~G~V~VNGk~v~~~~~~v~~gD~I~i~ 121 (298)
...++|||++++ ....|+.||+|.+-
T Consensus 109 ~ngt~VNG~~i~-~~~~L~~GD~I~~G 134 (154)
T 4ejq_A 109 GADTYVNGKKVT-EPSILRSGNRIIMG 134 (154)
T ss_dssp TCCEEETTEECC-SCEECCTTCEEEET
T ss_pred CCceEECCEEcC-CceECCCCCEEEEC
Confidence 356999999994 45789999999883
No 59
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=49.35 E-value=11 Score=29.18 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=30.1
Q ss_pred hHHHHHHhccCCcCHHHHHHHH-HCC--------ceEECCEEec---cccccccCCCEEee
Q 022339 72 RLDAWISSRIDGISRARVQSSI-RSG--------LVSINGQVVS---KVSHNVKGGDMVNC 120 (298)
Q Consensus 72 rLdk~L~~~~~~~Sr~~~~~lI-~~G--------~V~VNGk~v~---~~~~~v~~gD~I~i 120 (298)
.|-++|.+.++.. |. +++ ..| .|.|||..+. ..++.|+.||+|.+
T Consensus 39 dLl~~L~~~~~~~-r~---~lf~~~g~~~lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~f 95 (110)
T 2k9x_A 39 GLVQLLKTNYVKE-RP---DLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEF 95 (110)
T ss_dssp HHHHHHTTTTCCS-CH---HHHBCSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEE
T ss_pred HHHHHHHHHcccc-ch---hhEecCCCcccCCCeEEEECCeeeeccCCcccCCCCcCEEEE
Confidence 4667777766544 33 333 234 2789998762 46789999999887
No 60
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=49.02 E-value=12 Score=25.85 Aligned_cols=46 Identities=15% Similarity=0.013 Sum_probs=29.3
Q ss_pred ccchHHHHHHhccCCcCHHHHHHHHHCCceEECCEEeccccccccCCCEEeecc
Q 022339 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (298)
Q Consensus 69 ~g~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD~I~i~~ 122 (298)
.|.++..++...- .....+. =.+.|||+.+ ..++.|..||.|++..
T Consensus 17 ~g~T~~dla~~i~----~~l~~~~---vaa~vNg~lv-dl~~~L~~~~~Veivt 62 (73)
T 2kmm_A 17 QGATALDFAYSLH----SDLGDHC---IGAKVNHKLV-PLSYVLNSGDQVEVLS 62 (73)
T ss_dssp TTCBHHHHHHHHC----SHHHHTE---EEEEETTEEC-CTTCBCCSSSBEEEEE
T ss_pred CCCcHHHHHHHHh----hccccce---EEEEECCEEe-CCCcCcCCCCEEEEEE
Confidence 4566777665531 1111111 1347899998 5789999999998754
No 61
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=48.88 E-value=5.7 Score=28.44 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=32.5
Q ss_pred CccchHHHHHHhccCCcCHHHHHHHHHCCceEECCEEeccccccccCCCEEeecc
Q 022339 68 AGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (298)
Q Consensus 68 ~~g~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD~I~i~~ 122 (298)
.++.++.++|.+. +++...+ -|.+||+.+ ..+..+. ||.|+|..
T Consensus 18 ~~g~Tv~dLL~~L--gl~~~~V-------vV~vNG~~v-~~d~~l~-GD~VeIv~ 61 (74)
T 2l32_A 18 DDDGTYADLVRAV--DLSPHEV-------TVLVDGRPV-PEDQSVE-VDRVKVLR 61 (74)
T ss_dssp STTCSHHHHHHTT--CCCSSCC-------CEECCCCCC-CTTSSSC-CCCEEECS
T ss_pred CCCCcHHHHHHHc--CCCcceE-------EEEECCEEC-CHHHCCC-CCEEEEEE
Confidence 4567899999876 4555432 488999998 4677665 99999854
No 62
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=42.87 E-value=7.8 Score=29.78 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=17.6
Q ss_pred CCceEECCEEeccccccccCCCEE
Q 022339 95 SGLVSINGQVVSKVSHNVKGGDMV 118 (298)
Q Consensus 95 ~G~V~VNGk~v~~~~~~v~~gD~I 118 (298)
+|.|+|||+++ ....|..||.|
T Consensus 61 nGtVFVNGqrv--~~~~I~~gDtI 82 (102)
T 3uv0_A 61 VGKIFVNDQEE--TVVDIGMENAV 82 (102)
T ss_dssp SSCEEETTEEE--SEEEECGGGCB
T ss_pred cCcEEECCEEe--eeEEccCCccc
Confidence 58899999998 46667778874
No 63
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=42.21 E-value=17 Score=28.70 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=20.8
Q ss_pred CceEECCEEeccccccccCCCEEeecc
Q 022339 96 GLVSINGQVVSKVSHNVKGGDMVNCTI 122 (298)
Q Consensus 96 G~V~VNGk~v~~~~~~v~~gD~I~i~~ 122 (298)
..++|||+++.. ..|+.||+|.+-.
T Consensus 82 NGT~vNg~~i~~--~~L~~GD~I~iG~ 106 (131)
T 3hx1_A 82 NGLMINGKKVQE--HIIQTGDEIVMGP 106 (131)
T ss_dssp SCEEETTEEESE--EECCTTCEEECST
T ss_pred CceEECCEEeEe--EECCCCCEEEECC
Confidence 578999999953 8899999998843
No 64
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=41.71 E-value=13 Score=27.84 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=20.6
Q ss_pred CceEECCEEeccccccccCCCEEeecc
Q 022339 96 GLVSINGQVVSKVSHNVKGGDMVNCTI 122 (298)
Q Consensus 96 G~V~VNGk~v~~~~~~v~~gD~I~i~~ 122 (298)
..++|||+++. ....|+.||+|.+-.
T Consensus 69 nGt~vng~~i~-~~~~L~~Gd~i~~G~ 94 (106)
T 3gqs_A 69 NGVIVEGRKIE-HQSTLSANQVVALGT 94 (106)
T ss_dssp SCCEETTEECS-SEEECCTTCCEEETT
T ss_pred CCeEECCEECC-CCeECCCCCEEEECC
Confidence 46889999984 456899999998843
No 65
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=41.46 E-value=12 Score=28.94 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=21.1
Q ss_pred CCceEECCEEeccccccccCCCEEeec
Q 022339 95 SGLVSINGQVVSKVSHNVKGGDMVNCT 121 (298)
Q Consensus 95 ~G~V~VNGk~v~~~~~~v~~gD~I~i~ 121 (298)
...++|||+++. ....|+.||+|.+-
T Consensus 79 ~ngt~vNg~~i~-~~~~L~~GD~I~iG 104 (120)
T 1wln_A 79 DAETYVDGQRIS-ETTMLQSGMRLQFG 104 (120)
T ss_dssp SSCEEETSCBCS-SCEEECTTCEEEET
T ss_pred CCCEEECCEEcC-CCEECCCCCEEEEC
Confidence 467899999995 45689999999884
No 66
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=38.25 E-value=6.2 Score=30.77 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=30.5
Q ss_pred hHHHHHHhccCCcCHHHHHHHH-HCC------ceEECCEEec---cccccccCCCEEeec
Q 022339 72 RLDAWISSRIDGISRARVQSSI-RSG------LVSINGQVVS---KVSHNVKGGDMVNCT 121 (298)
Q Consensus 72 rLdk~L~~~~~~~Sr~~~~~lI-~~G------~V~VNGk~v~---~~~~~v~~gD~I~i~ 121 (298)
-|-++|.+.++...++ ++ ..| .|+|||.-+. ..++.|+.||+|.|.
T Consensus 47 ~Ll~~L~~~~~~~~~~----lf~~~g~lr~~i~VlVN~~di~~l~gldt~L~dGDeV~ii 102 (114)
T 1wgk_A 47 NLLVWIKKNLLKERPE----LFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFI 102 (114)
T ss_dssp HHHHHHTTTTCCSCHH----HHCCSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEE
T ss_pred HHHHHHHHHccchhHh----hCccCCcccCCeEEEECCeeeeccCCcCcCCCCCCEEEEe
Confidence 3666777776555332 22 223 4889998652 467899999998873
No 67
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=37.36 E-value=36 Score=22.69 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=24.1
Q ss_pred chHHHHHHhccCCcCHHHHHHHHHCCceE
Q 022339 71 LRLDAWISSRIDGISRARVQSSIRSGLVS 99 (298)
Q Consensus 71 ~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~ 99 (298)
.+|++|-..+|...|.+.+++++++|.|.
T Consensus 3 ltl~EwA~~~~~~~s~~Tl~r~ar~G~I~ 31 (52)
T 2og0_A 3 LTLQEWNARQRRPRSLETVRRWVRESRIF 31 (52)
T ss_dssp EEHHHHHHTSSSCCCHHHHHHHHHTTCEE
T ss_pred eeHHHHHHHhcCCCCHHHHHHHHHCCCCC
Confidence 35788888776457999999999999995
No 68
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=36.29 E-value=26 Score=26.00 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=20.3
Q ss_pred ceEECCEEec---cccccccCCCEEeec
Q 022339 97 LVSINGQVVS---KVSHNVKGGDMVNCT 121 (298)
Q Consensus 97 ~V~VNGk~v~---~~~~~v~~gD~I~i~ 121 (298)
.|.|||.-+. ..+..|+.||+|.+.
T Consensus 66 ~v~VN~~~~~~~~~~d~~L~dgDeVa~~ 93 (99)
T 2qjl_A 66 ITLINDTDWELEGEKDYILEDGDIISFT 93 (99)
T ss_dssp EEEETTEEGGGGTGGGCBCCTTCEEEEE
T ss_pred EEEECCEEccccCCCCcCcCCCCEEEEE
Confidence 4889999763 367899999999874
No 69
>2rsx_A Uncharacterized protein YOEB; inhibitor protein, hacksaw-like fold, autolysin inhibitor, D endopeptidase inhibitor, hydrolase inhibitor; NMR {Bacillus subtilis}
Probab=35.82 E-value=97 Score=25.50 Aligned_cols=53 Identities=8% Similarity=0.186 Sum_probs=40.8
Q ss_pred CCcCCCCceEEEEEEcCCCccchHHHHHHhccCCcCHHHHHHHHH-CCceEECCEEe
Q 022339 50 EPIANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIR-SGLVSINGQVV 105 (298)
Q Consensus 50 ~~~~~~~~~~~~~~v~~~~~g~rLdk~L~~~~~~~Sr~~~~~lI~-~G~V~VNGk~v 105 (298)
.+.-.+.|..+....+.-.....|.++|.+. .+.+.+.+.|. -.-+.+||+-+
T Consensus 42 ~~~f~~~g~~Y~~l~~d~nTkeKL~~YLn~y---fTk~ai~~~ik~~~f~e~nGkla 95 (159)
T 2rsx_A 42 SGTFEYQNLQYVYMCSDLGTKAKAVNYLTPI---FTKTAIEKGFKDYHFTVSKGKLA 95 (159)
T ss_dssp CCEEEETTEEEEECCTTSSSHHHHHHHHTTT---BCHHHHHHHHHTTTCEEETTEEE
T ss_pred cCceEECCEEeEEcccccCCHHHHHHHHHHH---HHHHHHHHHHhccceEEECCEEE
Confidence 3444567888888777777888999999975 59999999775 45566899855
No 70
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=35.76 E-value=13 Score=27.86 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=20.6
Q ss_pred ceEECCEEec---cccccccCCCEEeec
Q 022339 97 LVSINGQVVS---KVSHNVKGGDMVNCT 121 (298)
Q Consensus 97 ~V~VNGk~v~---~~~~~v~~gD~I~i~ 121 (298)
.|.|||+.+. ..+..|+.||+|.|.
T Consensus 66 ~v~VNg~~v~~~~~~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 66 NILINGNNIRHLEGLETLLKDSDEIGIL 93 (99)
T ss_dssp EEEETTSCGGGTTSTTSCCCTTEEEEEE
T ss_pred EEEECCEEccccCCCCCCCCCCCEEEEE
Confidence 6899999873 367889999999884
No 71
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=34.96 E-value=23 Score=26.16 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=20.5
Q ss_pred CceEECCEEeccccccccCCCEEeecc
Q 022339 96 GLVSINGQVVSKVSHNVKGGDMVNCTI 122 (298)
Q Consensus 96 G~V~VNGk~v~~~~~~v~~gD~I~i~~ 122 (298)
..++|||+++. ...|+.||+|.+-.
T Consensus 65 nGt~vng~~i~--~~~L~~gd~i~iG~ 89 (100)
T 3po8_A 65 NGTTVNNAPVQ--EWQLADGDVIRLGH 89 (100)
T ss_dssp SCCEETTEECS--EEECCTTCEEEETT
T ss_pred CCEEECCEECc--eEECCCCCEEEECC
Confidence 46899999984 57899999998843
No 72
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=34.41 E-value=26 Score=29.04 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=21.0
Q ss_pred ceEECCEEecc---ccccccCCCEEeecc
Q 022339 97 LVSINGQVVSK---VSHNVKGGDMVNCTI 122 (298)
Q Consensus 97 ~V~VNGk~v~~---~~~~v~~gD~I~i~~ 122 (298)
.|.|||+.+.. .+..|+.||+|.|..
T Consensus 54 ~VaVNg~~v~~~~~~dt~L~dGDeVai~P 82 (168)
T 1v8c_A 54 SVFLEGRDVRYLQGLSTPLSPGATLDLFP 82 (168)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEEC
T ss_pred EEEECCEECCCcCCCccCCCCCCEEEEEC
Confidence 58899999843 278899999998854
No 73
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=32.42 E-value=34 Score=26.88 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=19.4
Q ss_pred CCceEECCEEecccc--ccccCCCEEeec
Q 022339 95 SGLVSINGQVVSKVS--HNVKGGDMVNCT 121 (298)
Q Consensus 95 ~G~V~VNGk~v~~~~--~~v~~gD~I~i~ 121 (298)
....+|||+++. +. ..|+.||+|.+-
T Consensus 93 tNGT~vNg~ri~-~~~~~~L~~GD~I~~G 120 (130)
T 4h87_A 93 THGTFLNKTRIP-PRTYCRVHVGHVVRFG 120 (130)
T ss_dssp SSCEEETTEECC-TTCCEECCTTCEEEET
T ss_pred CCceEECCEECC-CCceeECCCCCEEEEC
Confidence 346778999984 33 368999999884
No 74
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=32.08 E-value=25 Score=28.18 Aligned_cols=29 Identities=24% Similarity=0.181 Sum_probs=21.9
Q ss_pred HCCceEECCEEeccccccccCCCEEeecc
Q 022339 94 RSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (298)
Q Consensus 94 ~~G~V~VNGk~v~~~~~~v~~gD~I~i~~ 122 (298)
....++|||+++......|+.||+|.+-.
T Consensus 85 S~NGT~VNg~~i~~~~~~L~~GD~I~lG~ 113 (151)
T 2jqj_A 85 SRNGTFINGNRLVKKDYILKNGDRIVFGK 113 (151)
T ss_dssp CSSCEEETTEECCSSCEEECSSEEEEETT
T ss_pred CCCCeEECCEEcCCCceECCCCCEEEECC
Confidence 44668999999943247799999998843
No 75
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=31.95 E-value=23 Score=27.44 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=20.5
Q ss_pred CceEECCEEeccccccccCCCEEeec
Q 022339 96 GLVSINGQVVSKVSHNVKGGDMVNCT 121 (298)
Q Consensus 96 G~V~VNGk~v~~~~~~v~~gD~I~i~ 121 (298)
..++|||+++. ....|+.||+|.+-
T Consensus 75 nGt~vNg~~i~-~~~~L~~Gd~i~iG 99 (128)
T 1r21_A 75 NPTQVNGSVID-EPVRLKHGDVITII 99 (128)
T ss_dssp SCCEETTEECS-SCEECCTTEEEECS
T ss_pred CCEEECCEECC-CcEEcCCCCEEEEC
Confidence 56789999995 45789999999884
No 76
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=30.15 E-value=44 Score=26.01 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=17.2
Q ss_pred CCceEECCEEeccccccccCCCEEeec
Q 022339 95 SGLVSINGQVVSKVSHNVKGGDMVNCT 121 (298)
Q Consensus 95 ~G~V~VNGk~v~~~~~~v~~gD~I~i~ 121 (298)
.|.|.+||- ..+.+++||.|.|-
T Consensus 69 Sg~I~lNGA----AAr~~~~GD~vII~ 91 (114)
T 3oug_A 69 SKTIALNGP----AARRCEIGDQLFII 91 (114)
T ss_dssp SCCEEEEGG----GGGGCCTTCEEEEE
T ss_pred CCEEEeCCH----HHhccCCCCEEEEE
Confidence 467888883 45678999988763
No 77
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=28.27 E-value=36 Score=25.82 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=20.3
Q ss_pred CCceEECCEEeccccccccCCCEEeec
Q 022339 95 SGLVSINGQVVSKVSHNVKGGDMVNCT 121 (298)
Q Consensus 95 ~G~V~VNGk~v~~~~~~v~~gD~I~i~ 121 (298)
...++|||+++. ...|+.||+|.+-
T Consensus 72 ~nGt~vng~~i~--~~~L~~gd~i~iG 96 (115)
T 2xt9_B 72 LNGTYVNREPVD--SAVLANGDEVQIG 96 (115)
T ss_dssp SSCEEETTEECS--EEEECTTCEEEET
T ss_pred CCCeEECCEEcc--eEECCCCCEEEEC
Confidence 356789999984 5789999999884
No 78
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=25.15 E-value=50 Score=25.93 Aligned_cols=26 Identities=15% Similarity=0.200 Sum_probs=20.9
Q ss_pred CceEECCEEeccc--cccccCCCEEeecc
Q 022339 96 GLVSINGQVVSKV--SHNVKGGDMVNCTI 122 (298)
Q Consensus 96 G~V~VNGk~v~~~--~~~v~~gD~I~i~~ 122 (298)
...+|||+++. . ...|+.||+|.+-.
T Consensus 75 NGT~vNg~~l~-~~~~~~L~~GD~I~lG~ 102 (138)
T 2pie_A 75 NGVWLNRARLE-PLRVYSIHQGDYIQLGV 102 (138)
T ss_dssp SCEEETTEECC-TTCCEECCTTCEEEESC
T ss_pred CCeEECCEEcC-CCCcEECCCCCEEEECC
Confidence 56899999984 4 47799999999854
No 79
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=24.49 E-value=35 Score=27.31 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=18.6
Q ss_pred CceEECCEEeccccccccCCCEEeec
Q 022339 96 GLVSINGQVVSKVSHNVKGGDMVNCT 121 (298)
Q Consensus 96 G~V~VNGk~v~~~~~~v~~gD~I~i~ 121 (298)
..++|||+++. ...|+.||+|.|-
T Consensus 108 NGT~VNg~~i~--~~~L~~GD~I~iG 131 (143)
T 2kb3_A 108 NGTYVNREPRN--AQVMQTGDEIQIG 131 (143)
T ss_dssp SCCEETTEECS--EEECCTTEEEEET
T ss_pred CCeEECCEEcc--eEECCCCCEEEEC
Confidence 34568999884 5789999999884
No 80
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=24.36 E-value=48 Score=25.59 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=21.8
Q ss_pred HCCceEECCEEecc-ccccccCCCEEeecc
Q 022339 94 RSGLVSINGQVVSK-VSHNVKGGDMVNCTI 122 (298)
Q Consensus 94 ~~G~V~VNGk~v~~-~~~~v~~gD~I~i~~ 122 (298)
.....+|||+++.. ....|..||+|.+-.
T Consensus 77 S~NGT~vNg~~l~~~~~~~L~~Gd~I~lG~ 106 (127)
T 1g6g_A 77 STNGTWLNGQKVEKNSNQLLSQGDEITVGV 106 (127)
T ss_dssp CSSCCEETTEECCTTCCEECCTTCEEEECT
T ss_pred CcCCeEECCEEcCCCCeEEcCCCCEEEECC
Confidence 34668999999843 137799999999854
No 81
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=23.83 E-value=39 Score=25.62 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=17.8
Q ss_pred CCceEECCEEeccccccccCCCEEee
Q 022339 95 SGLVSINGQVVSKVSHNVKGGDMVNC 120 (298)
Q Consensus 95 ~G~V~VNGk~v~~~~~~v~~gD~I~i 120 (298)
+|.|.+||- ..+.+++||.|.|
T Consensus 40 SG~I~lNGA----AArl~~~GD~vII 61 (97)
T 1uhe_A 40 RGEICVNGA----AARKVAIGDVVII 61 (97)
T ss_dssp TTCEEEEGG----GGGGCCTTCEEEE
T ss_pred CCeEEEchH----HHccCCCCCEEEE
Confidence 588999993 4567999998876
No 82
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=23.24 E-value=57 Score=24.65 Aligned_cols=22 Identities=50% Similarity=0.768 Sum_probs=17.4
Q ss_pred CCceEECCEEeccccccccCCCEEee
Q 022339 95 SGLVSINGQVVSKVSHNVKGGDMVNC 120 (298)
Q Consensus 95 ~G~V~VNGk~v~~~~~~v~~gD~I~i 120 (298)
+|.|.+||- ..+.+++||.|.|
T Consensus 42 SG~I~lNGA----AArl~~~GD~vII 63 (96)
T 1vc3_B 42 SGVIGINGA----AAHLVKPGDLVIL 63 (96)
T ss_dssp TTCEEEEGG----GGGTCCTTCEEEE
T ss_pred CCeEEEchH----HHccCCCCCEEEE
Confidence 478999993 4567999998876
No 83
>1pm6_A Excisionase; antiparallel beta-sheet, winged-helix, CIS-trans-trans triproline, gene regulation; NMR {Enterobacteria phage HK022} SCOP: a.6.1.7
Probab=23.18 E-value=66 Score=22.86 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=24.3
Q ss_pred chHHHHHHhccCCcCHHHHHHHHHCCceE
Q 022339 71 LRLDAWISSRIDGISRARVQSSIRSGLVS 99 (298)
Q Consensus 71 ~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~ 99 (298)
.+|++|-..+|...|.+.+++++++|.|.
T Consensus 3 lTl~EwA~~~~~~~s~~Tl~r~ar~G~I~ 31 (72)
T 1pm6_A 3 LTLQEWNARQRRPRSLETVRRWVRESRIF 31 (72)
T ss_dssp EEHHHHHHHSSSCCCHHHHHHHHHHTCEE
T ss_pred eeHHHHHHHhcCCCCHHHHHHHHHCCCCC
Confidence 35888888776457999999999999995
No 84
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=22.95 E-value=56 Score=26.54 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=21.8
Q ss_pred HCCceEECCEEeccc-cccccCCCEEeecc
Q 022339 94 RSGLVSINGQVVSKV-SHNVKGGDMVNCTI 122 (298)
Q Consensus 94 ~~G~V~VNGk~v~~~-~~~v~~gD~I~i~~ 122 (298)
..+..+|||+++... ...|..||+|.+-.
T Consensus 105 S~NGT~vNg~~i~~~~~~~L~~GD~I~iG~ 134 (164)
T 1g3g_A 105 STNGTWLNGQKVEKNSNQLLSQGDEITVGV 134 (164)
T ss_dssp CSSCEEETTEEECTTEEEECCTTCEEEESC
T ss_pred CCCCeEECCEEcCCCCceEcCCCCEEEECC
Confidence 446788999998421 37799999998854
No 85
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=22.81 E-value=45 Score=26.61 Aligned_cols=28 Identities=11% Similarity=0.183 Sum_probs=21.1
Q ss_pred CCceEECCEEecc-ccccccCCCEEeecc
Q 022339 95 SGLVSINGQVVSK-VSHNVKGGDMVNCTI 122 (298)
Q Consensus 95 ~G~V~VNGk~v~~-~~~~v~~gD~I~i~~ 122 (298)
....+|||+++.. ....|+.||+|.+-.
T Consensus 102 tNGT~VNg~~i~~~~~~~L~~GD~I~lG~ 130 (149)
T 1gxc_A 102 GNGTFVNTELVGKGKRRPLNNNSEIALSL 130 (149)
T ss_dssp SSCEEETTEECCTTCEEECCTTEEEEESS
T ss_pred CCCeEECCEECCCCCeEECCCCCEEEECC
Confidence 3567999999842 256789999998854
No 86
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=22.64 E-value=42 Score=25.65 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=18.0
Q ss_pred CCceEECCEEeccccccccCCCEEeec
Q 022339 95 SGLVSINGQVVSKVSHNVKGGDMVNCT 121 (298)
Q Consensus 95 ~G~V~VNGk~v~~~~~~v~~gD~I~i~ 121 (298)
+|.|.+||- ..+.+++||.|.|-
T Consensus 41 SG~I~lNGA----AArl~~~GD~vII~ 63 (102)
T 3plx_B 41 EGVVCLNGA----AARLAEVGDKVIIM 63 (102)
T ss_dssp TTCEEEEGG----GGGGCCTTCEEEEE
T ss_pred CCEEEeCcH----HHhccCCCCEEEEE
Confidence 488999993 45679999988763
No 87
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=22.60 E-value=40 Score=27.33 Aligned_cols=28 Identities=11% Similarity=0.185 Sum_probs=21.5
Q ss_pred HCCceEECCEEeccc-cccccCCCEEeec
Q 022339 94 RSGLVSINGQVVSKV-SHNVKGGDMVNCT 121 (298)
Q Consensus 94 ~~G~V~VNGk~v~~~-~~~v~~gD~I~i~ 121 (298)
.....+|||+++... ...|..||+|.+.
T Consensus 81 StNGT~VNg~ri~~~~~~~L~~GD~I~l~ 109 (158)
T 1dmz_A 81 GTNVSYLNNNRMIQGTKFLLQDGDEIKII 109 (158)
T ss_dssp STTCCEETTEECCSSEEEECCSSCCEESC
T ss_pred CcCCeEECCEEcCCCceEEcCCCCEEEEe
Confidence 446789999999421 3779999999984
No 88
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=21.02 E-value=49 Score=26.05 Aligned_cols=28 Identities=11% Similarity=0.143 Sum_probs=21.3
Q ss_pred CCceEECCEEecc---------ccccccCCCEEeecc
Q 022339 95 SGLVSINGQVVSK---------VSHNVKGGDMVNCTI 122 (298)
Q Consensus 95 ~G~V~VNGk~v~~---------~~~~v~~gD~I~i~~ 122 (298)
....+|||+++.. ....|+.||+|.+-.
T Consensus 75 ~NGT~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~iG~ 111 (139)
T 1mzk_A 75 LNGTLVNSHSISHPDLGSRKWGNPVELASDDIITLGT 111 (139)
T ss_dssp SSCCEETTEESSCCCTTTCCCCCCEECCTTEEEECSS
T ss_pred CCCEEECCEECcCcccccccCCceEECCCCCEEEECC
Confidence 3567999999953 257789999998843
No 89
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=20.83 E-value=28 Score=26.46 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=19.5
Q ss_pred CceEECCEEeccc-cccccCCCEEeecc
Q 022339 96 GLVSINGQVVSKV-SHNVKGGDMVNCTI 122 (298)
Q Consensus 96 G~V~VNGk~v~~~-~~~v~~gD~I~i~~ 122 (298)
...+|||+++... ...|+.||+|.+-.
T Consensus 76 nGT~vng~~l~~~~~~~L~~gd~i~lG~ 103 (118)
T 1uht_A 76 NGTLLNSNALDPETSVNLGDGDVIKLGE 103 (118)
T ss_dssp SCCEESSSBCCTTCEEECCTTEEEEETT
T ss_pred CCeEECCEECCCCCeEEcCCCCEEEECC
Confidence 4577899888421 46788999998843
No 90
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=20.82 E-value=13 Score=27.93 Aligned_cols=63 Identities=11% Similarity=0.042 Sum_probs=46.6
Q ss_pred CceEEEEEEcCCCccchHHHHHHhccCCcCHHHHHHHHHCCceEECCEEeccccccccCCCEEeecc
Q 022339 56 AGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (298)
Q Consensus 56 ~~~~~~~~v~~~~~g~rLdk~L~~~~~~~Sr~~~~~lI~~G~V~VNGk~v~~~~~~v~~gD~I~i~~ 122 (298)
.|-++...|.+.+.=..|.+.++... +++..+ +++|..|++.-|+..+ .++.|..|+.|.++.
T Consensus 30 ~Gkk~~v~v~p~DTI~~LK~~I~~k~-Gip~~q-QrLif~Gk~LkD~~TL--~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 30 LGKKVRVKCLGEDSVGDFKKVLSLQI-GTQPNK-IVLQKGGSVLKDHISL--EDYEVHDQTNLELYY 92 (93)
T ss_dssp TSCEEEEEEETTSBHHHHHHHHHHHH-TCCGGG-EEEEETTEECCTTSBT--GGGTCCTTCEEEEEE
T ss_pred CCCEEEEEECCcCHHHHHHHHHHHHh-CCCHHH-EEEEeCCEEccCcCCH--HHcCCCCCCEEEEEe
Confidence 34566677778888888999998874 455543 4677788887777655 588999999998753
No 91
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=20.78 E-value=32 Score=26.06 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=20.5
Q ss_pred CceEECCEEecc-ccccccCCCEEeecc
Q 022339 96 GLVSINGQVVSK-VSHNVKGGDMVNCTI 122 (298)
Q Consensus 96 G~V~VNGk~v~~-~~~~v~~gD~I~i~~ 122 (298)
..++|||+++.. ....|+.||+|.+-.
T Consensus 68 NGt~vng~~l~~~~~~~L~~GD~i~~G~ 95 (116)
T 1lgp_A 68 SGTVINKLKVVKKQTCPLQTGDVIYLVY 95 (116)
T ss_dssp SCCCCCCCCCCCSSCCCCCTTCEEEEEC
T ss_pred CCcEECCEEcCCCCcEECCCCCEEEEec
Confidence 457899998843 247799999999865
Done!