BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022340
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
pdb|2IQJ|B Chain B, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
Length = 134
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 84/116 (72%), Gaps = 4/116 (3%)
Query: 14 KHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATL 73
+++ +L LL +N+ CADC++KGPRWAS N+G+FIC++C+GIHR+LGVHIS+V+S L
Sbjct: 13 RYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNL 72
Query: 74 DTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDR----VGIENFIRAKYEEKRWIPR 125
D W EQ+ +Q MGN K+N +EA LP + R +E FIR KYE+K+++ R
Sbjct: 73 DQWTQEQIQCMQEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDR 128
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1
Length = 141
Score = 130 bits (328), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 81/111 (72%), Gaps = 4/111 (3%)
Query: 8 SKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISK 67
+++LN +H+ IL LL+ +N+ CADC+AKGPRWAS N+G+FIC++C+GIHR+LGVHIS+
Sbjct: 9 AQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISR 68
Query: 68 VRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDR----VGIENFIR 114
V+S LD W EQ+ +Q MGN K+ +EA LP N+ R +E FIR
Sbjct: 69 VKSVNLDQWTAEQIQCMQDMGNTKARLLYEANLPENFRRPQTDQAVEFFIR 119
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 68/106 (64%), Gaps = 8/106 (7%)
Query: 28 NRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSM 87
N +C DC+ P WAS+NLG+ +C+QCSGIHRSLGVH SKVRS TLD+W PE V ++ +
Sbjct: 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL 104
Query: 88 GNEKSNSYWEAEL--------PPNYDRVGIENFIRAKYEEKRWIPR 125
GN N +EA + P+ R E +I AKY EK+++ +
Sbjct: 105 GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTK 150
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 68/106 (64%), Gaps = 8/106 (7%)
Query: 28 NRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSM 87
N +C DC+ P WAS+NLG+ +C+QCSGIHRSLGVH SKVRS TLD+W PE V ++ +
Sbjct: 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL 104
Query: 88 GNEKSNSYWEAEL--------PPNYDRVGIENFIRAKYEEKRWIPR 125
GN N +EA + P+ R E +I AKY EK+++ +
Sbjct: 105 GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTK 150
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 68/106 (64%), Gaps = 8/106 (7%)
Query: 28 NRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSM 87
N +C DC+ P WAS+NLG+ +C+QCSGIHRSLGVH SKVRS TLD+W PE V ++ +
Sbjct: 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL 104
Query: 88 GNEKSNSYWEAEL--------PPNYDRVGIENFIRAKYEEKRWIPR 125
GN N +EA + P+ R E +I AKY EK+++ +
Sbjct: 105 GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTK 150
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 76/127 (59%), Gaps = 9/127 (7%)
Query: 4 KANVSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGV 63
+ N+ + + R +L+ LL+ P N CADC A P WAS LG+FIC+ CSGIHR++
Sbjct: 11 RENLYFQGKERRRAVLE-LLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-P 68
Query: 64 HISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDR-------VGIENFIRAK 116
+SKV+S LD W QV + S GN+ + + +E+++P Y R + E +IRAK
Sbjct: 69 QVSKVKSVRLDAWEEAQVEFMASHGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAK 128
Query: 117 YEEKRWI 123
YE + +I
Sbjct: 129 YERQEFI 135
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 72/117 (61%), Gaps = 9/117 (7%)
Query: 14 KHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATL 73
+ R +L+ LL+ P N CADC A P WAS LG+FIC+ CSGIHR++ +SKV+S L
Sbjct: 23 RRRAVLE-LLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRL 80
Query: 74 DTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDR-------VGIENFIRAKYEEKRWI 123
D W QV + S GN+ + + +E+++P Y R + E +IRAKYE + +I
Sbjct: 81 DAWEEAQVEFMASHGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFI 137
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 64/118 (54%), Gaps = 10/118 (8%)
Query: 26 PENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQ 85
P N +C DC A P W S NLG+ C+QCSG+HR LGV S+++S TLD P ++ +
Sbjct: 40 PGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLAL 99
Query: 86 SMGNEKSNSYWEAELPPN--------YDRVGIENFIRAKYEEKRWIPRGGNTKSPSRV 135
+MGN N EA+LP + D ++I AKY E R+ R T P R+
Sbjct: 100 NMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR--CTPEPQRL 155
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 16 RKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT 75
++I+ + ++ N C DC A P W S NLGI C++CSGIHR LGVH S+++S TLD
Sbjct: 5 KEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV 64
Query: 76 WLPEQVAVIQSMGNEKSNSYWEAELP--------PNYDRVGIENFIRAKYEEKRW 122
++ + +++GN N E LP P D + +++I AKY E+R+
Sbjct: 65 LGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRY 119
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 60/108 (55%), Gaps = 8/108 (7%)
Query: 26 PENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQ 85
P N +C DC A P W S NLG+ C+QCSG+HR LGV S+++S TLD P ++ +
Sbjct: 21 PGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLAL 80
Query: 86 SMGNEKSNSYWEAELPPN--------YDRVGIENFIRAKYEEKRWIPR 125
+MGN N EA+LP + D ++I AKY E R+ R
Sbjct: 81 NMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 128
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
pdb|3SUB|B Chain B, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
Length = 163
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 65/112 (58%), Gaps = 10/112 (8%)
Query: 11 LNAKHRKILDGLLKLPE-NRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVR 69
+NA + ++ L K E N +C DC P W SVN GIF+C+ CSG+HRSLGVHIS VR
Sbjct: 4 MNAAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVR 63
Query: 70 SATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDRVGIENFI-RAKYEEK 120
S +D + EQ+ I GN+K +Y E NY GI +FI KY K
Sbjct: 64 SIKMDIFTDEQLKYIDKGGNKKCQTYLE-----NY---GISDFIPERKYRTK 107
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
pdb|2OWA|B Chain B, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
Length = 138
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 63/104 (60%), Gaps = 3/104 (2%)
Query: 1 MNEKANVSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60
++EK VS +L +I+ PENR C DC+++ P W S++ +FIC+ CS HR
Sbjct: 12 VDEKGFVSDKLRDNFFQIVR---NRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRK 68
Query: 61 LGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNY 104
+GVHIS VRS+ LD + P Q+ + GN ++ +Y++ L N+
Sbjct: 69 MGVHISFVRSSDLDKFTPIQLVRMDIGGNGRARNYFKQVLGVNF 112
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein
Length = 144
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 22 LLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT-WLPEQ 80
L +P N+ C DC AK P WAS+ G+F+C+ CSG+HRSLGVH+S +RS LD+ W Q
Sbjct: 31 LRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQ 90
Query: 81 VAVIQSMGNEKSNSYWE 97
+ +Q GN + +++
Sbjct: 91 LRCMQVGGNANATAFFR 107
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of
Adp-Ribosylation Factor Gtpaseactivating Protein 3
(Arfgap 3)
Length = 149
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 18 ILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT-W 76
I L +P N+ C DC AK P WAS+ G+F+C+ CSG HRSLGVH+S +RS LD+ W
Sbjct: 19 IFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNW 78
Query: 77 LPEQVAVIQSMGNEKSNSYWE 97
Q+ +Q GN ++S++
Sbjct: 79 SWFQLRCMQVGGNASASSFFH 99
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 14 KHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATL 73
+ RK+L + EN C +C A P+W SV GI+IC++CSG HR LGVH+S VRS T+
Sbjct: 23 RTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTM 82
Query: 74 DTWLPEQVAVIQSMGNEKSNSYWEAELPPNYD 105
D W ++ +++ GN K + E++ +YD
Sbjct: 83 DKWKDIELEKMKAGGNAKFREFLESQ--EDYD 112
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
pdb|3DWD|B Chain B, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
Length = 147
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 14 KHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATL 73
+ RK+L + EN C +C A P+W SV GI+IC++CSG HR LGVH+S VRS T+
Sbjct: 24 RTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTM 83
Query: 74 DTWLPEQVAVIQSMGNEKSNSYWEAELPPNYD 105
D W ++ +++ GN K + E++ +YD
Sbjct: 84 DKWKDIELEKMKAGGNAKFREFLESQ--EDYD 113
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein
Length = 140
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 14 KHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATL 73
KH K+L + LP NR+C DC +GP + ++ +G F+C CSG R L +V+S ++
Sbjct: 11 KHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNP-PHRVKSISM 69
Query: 74 DTWLPEQVAVIQSMGNEKSNSYW-------EAELPPNYDRVGIENFIRAKYEEKRW 122
T+ +++ +Q GNE W + +P D ++ F++ KYE+KRW
Sbjct: 70 TTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRW 125
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip
Length = 134
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 8/113 (7%)
Query: 17 KILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 76
K+L + LP NR+C DC +GP + ++ +G F+C CSG R L +V+S ++ T+
Sbjct: 9 KMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTF 67
Query: 77 LPEQVAVIQSMGNEKSNSYW-------EAELPPNYDRVGIENFIRAKYEEKRW 122
+++ +Q GNE W + +P D ++ F++ KYE+KRW
Sbjct: 68 TQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRW 120
>pdb|3OB8|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OBA|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
Length = 1032
Score = 31.2 bits (69), Expect = 0.75, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 101 PPNYDRVGIENFIRAKYEEKRWIPRGGNTKSPSRVSEEK 139
PP++ RVG E ++ YE W+ RG P + ++
Sbjct: 881 PPDFPRVGYEFWLGDSYESFEWLGRGPGESYPDKKESQR 919
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 84 IQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEEKRWI 123
+ + ++ YWE E+ P Y RV F+ + EKRW+
Sbjct: 56 MTKLATDELFDYWECEVTPPYRRVKY-GFLLQQGHEKRWM 94
>pdb|2KZI|A Chain A, Solution Structure Of The Zher2 Affibody
pdb|2KZJ|A Chain A, Solution Structure Of The Zher2 Affibody (Alternative)
Length = 70
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 81 VAVIQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEE 119
+ V E N+YWE L PN + FIR+ Y++
Sbjct: 11 LQVDNKFNKEMRNAYWEIALLPNLNNQQKRAFIRSLYDD 49
>pdb|3MZW|B Chain B, Her2 Extracelluar Region With Affinity Matured 3-Helix
Affibody Zher2:342
Length = 58
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 83 VIQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEE 119
V E N+YWE L PN + FIR+ Y++
Sbjct: 1 VDNKFNKEMRNAYWEIALLPNLNNQQKRAFIRSLYDD 37
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 6/30 (20%)
Query: 122 WIPRGGNTKSPSRVSEEKASFHRPLPSSSG 151
W RGG T++P R+S H P SSSG
Sbjct: 145 WSARGGQTRNPYRIS------HSPCGSSSG 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.127 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,048,118
Number of Sequences: 62578
Number of extensions: 367332
Number of successful extensions: 577
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 543
Number of HSP's gapped (non-prelim): 28
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)