Query 022340
Match_columns 298
No_of_seqs 216 out of 1176
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 03:54:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iqj_A Stromal membrane-associ 100.0 7.7E-44 2.6E-48 301.5 8.1 123 5-127 4-130 (134)
2 2crr_A Stromal membrane-associ 100.0 3.7E-43 1.3E-47 299.5 8.3 122 7-128 8-133 (141)
3 2olm_A Nucleoporin-like protei 100.0 9.4E-42 3.2E-46 290.6 11.1 120 7-127 4-130 (140)
4 3lju_X ARF-GAP with dual PH do 100.0 2.3E-37 7.7E-42 297.2 10.9 120 7-127 13-139 (386)
5 3jue_A Arfgap with coiled-coil 100.0 1.3E-37 4.3E-42 295.3 8.9 118 10-127 27-152 (368)
6 2owa_A Arfgap-like finger doma 100.0 1.1E-36 3.6E-41 259.1 8.5 108 14-121 22-132 (138)
7 2crw_A ARF GAP 3, ADP-ribosyla 100.0 1.2E-36 4E-41 261.8 5.5 93 12-104 13-106 (149)
8 3dwd_A ADP-ribosylation factor 100.0 2.2E-35 7.7E-40 253.3 10.1 114 11-124 21-145 (147)
9 2p57_A GTPase-activating prote 100.0 3.9E-34 1.3E-38 245.0 8.1 89 13-101 22-111 (144)
10 3sub_A ADP-ribosylation factor 100.0 5.4E-34 1.9E-38 248.1 6.8 110 11-120 4-115 (163)
11 2b0o_E UPLC1; arfgap, structur 100.0 5.8E-33 2E-37 253.4 10.9 120 6-125 20-147 (301)
12 3lvq_E ARF-GAP with SH3 domain 100.0 3.3E-33 1.1E-37 269.7 7.9 119 8-126 3-129 (497)
13 1dcq_A PYK2-associated protein 100.0 1.9E-32 6.6E-37 247.0 9.4 115 13-127 2-124 (278)
14 3o47_A ADP-ribosylation factor 100.0 1.2E-30 4.2E-35 242.7 8.5 92 10-101 19-110 (329)
15 1u5k_A Hypothetical protein; O 89.0 0.38 1.3E-05 42.4 4.6 76 25-117 147-222 (244)
16 1gnf_A Transcription factor GA 78.4 1.2 4E-05 31.1 2.2 38 26-63 2-40 (46)
17 3dfx_A Trans-acting T-cell-spe 70.7 2 7E-05 31.7 2.0 39 25-63 4-43 (63)
18 2vut_I AREA, nitrogen regulato 70.2 2.1 7.3E-05 29.3 1.9 35 29-63 2-37 (43)
19 4gat_A Nitrogen regulatory pro 66.8 3.1 0.0001 31.0 2.3 38 26-63 7-45 (66)
20 4hc9_A Trans-acting T-cell-spe 64.2 2.7 9.4E-05 34.1 1.7 36 28-63 5-41 (115)
21 1tjl_A DNAK suppressor protein 60.2 4 0.00014 34.6 2.1 35 25-59 108-143 (151)
22 2kgo_A Uncharacterized protein 59.3 1.5 5.2E-05 35.6 -0.6 33 27-59 55-88 (108)
23 2kae_A GATA-type transcription 51.9 3.8 0.00013 30.9 0.5 36 27-63 7-45 (71)
24 1d4u_A Nucleotide excision rep 49.8 3.2 0.00011 33.8 -0.2 31 27-57 4-35 (111)
25 3g9m_A Glucocorticoid receptor 41.9 8.2 0.00028 29.7 1.0 30 27-59 1-30 (90)
26 1ffk_W Ribosomal protein L37AE 37.0 17 0.00058 27.5 2.1 40 15-56 13-53 (73)
27 4hc9_A Trans-acting T-cell-spe 36.9 18 0.00062 29.2 2.4 38 26-63 57-95 (115)
28 2nll_B Protein (thyroid hormon 36.6 14 0.00047 29.4 1.6 29 29-60 2-30 (103)
29 3dzy_D Peroxisome proliferator 34.0 17 0.00058 34.7 2.1 32 26-60 48-79 (419)
30 4glq_A Methyl-accepting chemot 33.9 12 0.00042 30.7 1.0 26 75-100 132-157 (171)
31 2ebl_A COUP transcription fact 33.5 18 0.00061 28.0 1.8 32 26-60 5-36 (89)
32 2han_B Ecdysone receptor; tran 31.4 17 0.0006 29.4 1.4 31 27-60 7-37 (119)
33 1hcq_A Protein (estrogen recep 31.0 18 0.00061 27.7 1.3 31 27-60 3-33 (84)
34 1r4i_A Androgen receptor; AR, 30.8 16 0.00056 29.1 1.2 33 25-60 4-36 (105)
35 1dsz_A RAR-alpha, retinoic aci 30.8 20 0.00068 27.4 1.6 29 29-60 5-33 (86)
36 1dl6_A Transcription factor II 29.8 16 0.00054 26.0 0.8 28 29-57 12-39 (58)
37 1kb2_A Vitamin D3 receptor; VD 29.5 20 0.00067 28.8 1.4 30 28-60 6-35 (110)
38 2kq9_A DNAK suppressor protein 28.6 11 0.00037 30.1 -0.3 32 25-56 78-110 (112)
39 1zbd_B Rabphilin-3A; G protein 28.6 22 0.00074 29.4 1.6 33 26-58 53-90 (134)
40 2han_A Protein ultraspiracle; 27.4 20 0.00067 27.9 1.0 31 27-60 9-39 (93)
41 3j21_d 50S ribosomal protein L 27.1 31 0.0011 27.0 2.1 30 26-56 31-77 (89)
42 1ynw_B Retinoic acid receptor 27.0 18 0.00063 28.4 0.8 30 28-60 3-32 (99)
43 1cit_A NGFI-B, protein (orphan 26.2 29 0.00098 26.8 1.8 28 30-60 2-29 (89)
44 4hn5_A Glucocorticoid receptor 25.7 20 0.0007 29.1 0.9 34 23-59 24-57 (117)
45 2a66_A Orphan nuclear receptor 25.0 17 0.00058 29.4 0.3 33 25-60 6-38 (113)
46 1dsz_B RXR-alpha, retinoic aci 24.2 19 0.00066 27.5 0.4 31 27-60 4-34 (85)
47 1a6y_A Orphan nuclear receptor 22.9 28 0.00095 27.1 1.1 30 28-60 7-36 (94)
48 3cbb_A HNF-4-alpha, hepatocyte 21.8 32 0.0011 25.8 1.2 28 30-60 2-29 (78)
49 1lo1_A Steroid hormone recepto 21.6 19 0.00067 28.2 -0.0 30 28-60 4-33 (98)
50 3dzy_A Retinoic acid receptor 21.5 21 0.0007 34.8 0.1 30 27-59 136-165 (467)
51 2uzg_A Ubiquitin carboxyl-term 20.2 29 0.001 26.9 0.8 27 27-53 24-53 (97)
No 1
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=7.7e-44 Score=301.45 Aligned_cols=123 Identities=47% Similarity=0.889 Sum_probs=107.9
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeecccchHhhHhhhhhhhcCCCccceeeecccCCCCHHHHHHH
Q 022340 5 ANVSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVI 84 (298)
Q Consensus 5 ~~~sk~l~ar~ekiL~~Ll~~PgNk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~LG~hISkVKSltLD~Wt~eeV~~m 84 (298)
++.|++.+++++++|+.|++.|+|+.|||||+++|+|+|+|||||||++||||||+||+|||+||||+||+|++++|++|
T Consensus 4 ~~~~~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m 83 (134)
T 2iqj_A 4 TGKSVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCM 83 (134)
T ss_dssp ---------CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHH
T ss_pred ccccHhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHH
Confidence 56778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccHHHHHHHhhcCCCCCC----hHHHHHHHHHhhhcCccccCCC
Q 022340 85 QSMGNEKSNSYWEAELPPNYD----RVGIENFIRAKYEEKRWIPRGG 127 (298)
Q Consensus 85 k~~GN~~aN~~wEa~lPp~~d----~~~~e~FIraKY~~k~F~~~~~ 127 (298)
+.+||..+|.|||+++|+.+. ...+++|||+||++++|+.+..
T Consensus 84 ~~~GN~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~~ 130 (134)
T 2iqj_A 84 QEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRSL 130 (134)
T ss_dssp HTCHHHHHHHHHTTTCCSSCCCCCSHHHHHHHHHHHHTSCTTCCTTC
T ss_pred HHHchHHHHHHHHhcCCccCCCCCchHHHHHHHHHHHhCCeeeCCcc
Confidence 999999999999999986542 3568999999999999997654
No 2
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=3.7e-43 Score=299.52 Aligned_cols=122 Identities=50% Similarity=0.964 Sum_probs=112.8
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeecccchHhhHhhhhhhhcCCCccceeeecccCCCCHHHHHHHHh
Q 022340 7 VSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQS 86 (298)
Q Consensus 7 ~sk~l~ar~ekiL~~Ll~~PgNk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~LG~hISkVKSltLD~Wt~eeV~~mk~ 86 (298)
..++++++++++|+.|++.|+|+.|||||+++|+|||+|||||||++|+||||.||+|||+||||+||+|++++|++|+.
T Consensus 8 ~~~~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~ 87 (141)
T 2crr_A 8 KAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQD 87 (141)
T ss_dssp CTTTTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccHHHHHHHhhcCCCCCC----hHHHHHHHHHhhhcCccccCCCC
Q 022340 87 MGNEKSNSYWEAELPPNYD----RVGIENFIRAKYEEKRWIPRGGN 128 (298)
Q Consensus 87 ~GN~~aN~~wEa~lPp~~d----~~~~e~FIraKY~~k~F~~~~~~ 128 (298)
+||..+|+|||+++|+.+. ...+++|||+||++++|+.+...
T Consensus 88 ~GN~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~~~ 133 (141)
T 2crr_A 88 MGNTKARLLYEANLPENFRRPQTDQAVEFFIRDKYEKKKYYDKNAI 133 (141)
T ss_dssp THHHHHHHHGGGSCCTTCCCCCSHHHHHHHHHHHHTSCTTCCCGGG
T ss_pred HccHHHHHHHHhcCCcccCCCCchHHHHHHHHHHHhcCcccCCCcc
Confidence 9999999999999987542 34689999999999999976543
No 3
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=9.4e-42 Score=290.56 Aligned_cols=120 Identities=31% Similarity=0.666 Sum_probs=109.6
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeecccchHhhHhhhhhhhcCCCccceeeecccCCCCHHHHHHHHh
Q 022340 7 VSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQS 86 (298)
Q Consensus 7 ~sk~l~ar~ekiL~~Ll~~PgNk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~LG~hISkVKSltLD~Wt~eeV~~mk~ 86 (298)
.+++++++++++|+.|++.|+|+.|||||+++|+|+|+|||||||++||||||+||+| |+||||+||+|++++|++|+.
T Consensus 4 ~~~~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~ 82 (140)
T 2olm_A 4 AKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQK 82 (140)
T ss_dssp HHHHHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHH
Confidence 3467778999999999999999999999999999999999999999999999999996 999999999999999999999
Q ss_pred hccHHHHHHHhhcCCC-------CCChHHHHHHHHHhhhcCccccCCC
Q 022340 87 MGNEKSNSYWEAELPP-------NYDRVGIENFIRAKYEEKRWIPRGG 127 (298)
Q Consensus 87 ~GN~~aN~~wEa~lPp-------~~d~~~~e~FIraKY~~k~F~~~~~ 127 (298)
+||..+|.|||+++++ ..|...+++||++||++++|+.+..
T Consensus 83 ~GN~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~~~ 130 (140)
T 2olm_A 83 HGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPPE 130 (140)
T ss_dssp CHHHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCCHH
T ss_pred hccHHHHHHHHhhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeCCcc
Confidence 9999999999998753 2245578899999999999997543
No 4
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=100.00 E-value=2.3e-37 Score=297.20 Aligned_cols=120 Identities=41% Similarity=0.743 Sum_probs=111.9
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeecccchHhhHhhhhhhhcCCCccceeeecccCCCCHHHHHHHHh
Q 022340 7 VSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQS 86 (298)
Q Consensus 7 ~sk~l~ar~ekiL~~Ll~~PgNk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~LG~hISkVKSltLD~Wt~eeV~~mk~ 86 (298)
-+++++++++++|++|++.|+|+.|||||+++|+|||+|||||||++||||||+| +|||+||||+||.|++++|++|+.
T Consensus 13 ~~~~q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~ 91 (386)
T 3lju_X 13 NLYFQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMAS 91 (386)
T ss_dssp SHHHHHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hccHHHHHHHhhcCCCCC------C-hHHHHHHHHHhhhcCccccCCC
Q 022340 87 MGNEKSNSYWEAELPPNY------D-RVGIENFIRAKYEEKRWIPRGG 127 (298)
Q Consensus 87 ~GN~~aN~~wEa~lPp~~------d-~~~~e~FIraKY~~k~F~~~~~ 127 (298)
+||..+|+|||+++|+.. | ...+++|||+||++++|+..+.
T Consensus 92 ~gN~~~~~~~e~~~~~~~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~~ 139 (386)
T 3lju_X 92 HGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEK 139 (386)
T ss_dssp SSHHHHHHHHTTTCCTTSCCCCTTSCHHHHHHHHHHHHTSCTTTSGGG
T ss_pred hcchHHHHHHhccCCccCCCCCCccchHHHHHEHHhhhCCCEEECCcc
Confidence 999999999999987532 2 3457899999999999997665
No 5
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=100.00 E-value=1.3e-37 Score=295.34 Aligned_cols=118 Identities=42% Similarity=0.753 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeecccchHhhHhhhhhhhcCCCccceeeecccCCCCHHHHHHHHhhcc
Q 022340 10 ELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGN 89 (298)
Q Consensus 10 ~l~ar~ekiL~~Ll~~PgNk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~LG~hISkVKSltLD~Wt~eeV~~mk~~GN 89 (298)
+.+++++++|+.|++.|+|+.|||||+++|+|+|+|||||||++||||||+||+|||+||||+||.|++++|++|+.+||
T Consensus 27 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~gn 106 (368)
T 3jue_A 27 REPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGN 106 (368)
T ss_dssp -----CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHSCH
T ss_pred hhhhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHHHcc
Confidence 34455889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCC--------CChHHHHHHHHHhhhcCccccCCC
Q 022340 90 EKSNSYWEAELPPN--------YDRVGIENFIRAKYEEKRWIPRGG 127 (298)
Q Consensus 90 ~~aN~~wEa~lPp~--------~d~~~~e~FIraKY~~k~F~~~~~ 127 (298)
..+|.|||+++|+. .+...+++||++||++++|+.+..
T Consensus 107 ~~~n~~~e~~~~~~~~~kp~~~~~~~~re~fIr~KY~~k~f~~~l~ 152 (368)
T 3jue_A 107 VIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLP 152 (368)
T ss_dssp HHHHHHHTTTTTTTTCCCCCTTSCHHHHHHHHHHHHTSCTTCCSCC
T ss_pred HHHHHHHHhhcccccCcCCCCCCCHHHHHHHHHHHHHhhcccccch
Confidence 99999999998642 234578999999999999997654
No 6
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.1e-36 Score=259.10 Aligned_cols=108 Identities=31% Similarity=0.623 Sum_probs=97.4
Q ss_pred HHHHHHHHHhcCCCCCCCcCCCCCCCCeeecccchHhhHhhhhhhhcCCCccceeeecccCCCCHHHHHHHHhhccHHHH
Q 022340 14 KHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSN 93 (298)
Q Consensus 14 r~ekiL~~Ll~~PgNk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~LG~hISkVKSltLD~Wt~eeV~~mk~~GN~~aN 93 (298)
..+++|+.|++.|+|+.|||||+++|+|+|+|||||||++|||+||+||+|||+||||+||+|++++|++|+.+||..+|
T Consensus 22 ~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~~an 101 (138)
T 2owa_A 22 LRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRAR 101 (138)
T ss_dssp HHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCC--CC-ChHHHHHHHHHhhhcCc
Q 022340 94 SYWEAELPP--NY-DRVGIENFIRAKYEEKR 121 (298)
Q Consensus 94 ~~wEa~lPp--~~-d~~~~e~FIraKY~~k~ 121 (298)
+|||++... .. .+...+.||.++|+++.
T Consensus 102 ~~~e~~~~~~~~~~~~~kY~s~~a~~Y~~kL 132 (138)
T 2owa_A 102 NYFKQVLGVNFSPKTKEYASSICGRQYKQIL 132 (138)
T ss_dssp HHHHHHTCTTCCGGGCHHHHSHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHhhHHHHHHHHHH
Confidence 999984432 22 24567899999999873
No 7
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=261.81 Aligned_cols=93 Identities=40% Similarity=0.753 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeecccchHhhHhhhhhhhcCCCccceeeecccCC-CCHHHHHHHHhhccH
Q 022340 12 NAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT-WLPEQVAVIQSMGNE 90 (298)
Q Consensus 12 ~ar~ekiL~~Ll~~PgNk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~LG~hISkVKSltLD~-Wt~eeV~~mk~~GN~ 90 (298)
.++++++|+.|++.|+|+.|||||+++|+|+|+|||||||++|+||||.||+|||+||||+||. |++++|++|+.+||.
T Consensus 13 k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~GN~ 92 (149)
T 2crw_A 13 KQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNA 92 (149)
T ss_dssp HHHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHHHhhH
Confidence 4577899999999999999999999999999999999999999999999999999999999996 999999999999999
Q ss_pred HHHHHHhhcCCCCC
Q 022340 91 KSNSYWEAELPPNY 104 (298)
Q Consensus 91 ~aN~~wEa~lPp~~ 104 (298)
++|+|||++.+...
T Consensus 93 ~an~~~e~~~~~~~ 106 (149)
T 2crw_A 93 SASSFFHQHGCSTN 106 (149)
T ss_dssp HHHHHHHHHCCCCC
T ss_pred HHHHHHHhcCCCCc
Confidence 99999999987643
No 8
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.2e-35 Score=253.27 Aligned_cols=114 Identities=35% Similarity=0.659 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeecccchHhhHhhhhhhhcCCCccceeeecccCCCCHHHHHHHHhhccH
Q 022340 11 LNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNE 90 (298)
Q Consensus 11 l~ar~ekiL~~Ll~~PgNk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~LG~hISkVKSltLD~Wt~eeV~~mk~~GN~ 90 (298)
-+++++++|+.|++.|+|+.|||||+++|+|+|+|||||||++||||||+||+|||+||||+||+|++++|++|+.+||.
T Consensus 21 ~~~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~ 100 (147)
T 3dwd_A 21 ASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 100 (147)
T ss_dssp -CHHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCC--CCCCh---------HHHHHHHHHhhhcCcccc
Q 022340 91 KSNSYWEAELP--PNYDR---------VGIENFIRAKYEEKRWIP 124 (298)
Q Consensus 91 ~aN~~wEa~lP--p~~d~---------~~~e~FIraKY~~k~F~~ 124 (298)
++|+|||++.. +..+. ...++-|.++++.+.|..
T Consensus 101 ~an~~~ea~~~~~~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~ 145 (147)
T 3dwd_A 101 KFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSL 145 (147)
T ss_dssp HHHHHHHTSTTCCTTCCHHHHHTSHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHhCCCCCCCCCHHHhhCCHHHHHHHHHHHHHHcCCcCCC
Confidence 99999998742 22221 124677778887777753
No 9
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.9e-34 Score=244.97 Aligned_cols=89 Identities=39% Similarity=0.818 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhcCCCCCCCcCCCCCCCCeeecccchHhhHhhhhhhhcCCCccceeeecccCC-CCHHHHHHHHhhccHH
Q 022340 13 AKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT-WLPEQVAVIQSMGNEK 91 (298)
Q Consensus 13 ar~ekiL~~Ll~~PgNk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~LG~hISkVKSltLD~-Wt~eeV~~mk~~GN~~ 91 (298)
++.+++|+.|++.|+|+.|+|||+++|+|+|+|||||||++|+||||+||+|||+||||+||+ |++++|++|+.+||.+
T Consensus 22 ~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN~~ 101 (144)
T 2p57_A 22 TEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNAN 101 (144)
T ss_dssp HHHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCHHH
Confidence 456788999999999999999999999999999999999999999999999999999999996 9999999999999999
Q ss_pred HHHHHhhcCC
Q 022340 92 SNSYWEAELP 101 (298)
Q Consensus 92 aN~~wEa~lP 101 (298)
+|+||+++.-
T Consensus 102 an~~~e~~g~ 111 (144)
T 2p57_A 102 ATAFFRQHGC 111 (144)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHcCC
Confidence 9999998753
No 10
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=5.4e-34 Score=248.10 Aligned_cols=110 Identities=38% Similarity=0.652 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhcC-CCCCCCcCCCCCCCCeeecccchHhhHhhhhhhhcCCCccceeeecccCCCCHHHHHHHHhhcc
Q 022340 11 LNAKHRKILDGLLKL-PENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGN 89 (298)
Q Consensus 11 l~ar~ekiL~~Ll~~-PgNk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~LG~hISkVKSltLD~Wt~eeV~~mk~~GN 89 (298)
.++..+++|+.|++. |+|+.|||||+++|+|+|++||||||++|||+||+||+|||+||||+||.|++++|++|+.+||
T Consensus 4 m~a~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN 83 (163)
T 3sub_A 4 MNAAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGN 83 (163)
T ss_dssp HHHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCH
T ss_pred ccHHHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCH
Confidence 467788999999985 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCChH-HHHHHHHHhhhcC
Q 022340 90 EKSNSYWEAELPPNYDRV-GIENFIRAKYEEK 120 (298)
Q Consensus 90 ~~aN~~wEa~lPp~~d~~-~~e~FIraKY~~k 120 (298)
.++|.|||++.+...... ....-..++|+++
T Consensus 84 ~~an~~~e~~g~~~~~p~~KY~s~aA~~Yr~~ 115 (163)
T 3sub_A 84 KKCQTYLENYGISDFIPERKYRTKAADHYRKI 115 (163)
T ss_dssp HHHHHHHHHTTCTTSCHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccChhhcCCCHHHHHHHHH
Confidence 999999999876554421 1222344455554
No 11
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.98 E-value=5.8e-33 Score=253.42 Aligned_cols=120 Identities=38% Similarity=0.667 Sum_probs=105.8
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeecccchHhhHhhhhhhhcCCCccceeeecccCCCCHHHHHHHH
Q 022340 6 NVSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQ 85 (298)
Q Consensus 6 ~~sk~l~ar~ekiL~~Ll~~PgNk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~LG~hISkVKSltLD~Wt~eeV~~mk 85 (298)
..+...++..+++|+.|++.|+|+.|+|||+++|+|+|+|||+|||++|||+||.||+|||+|||++||.|+++++.+|.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~ 99 (301)
T 2b0o_E 20 GHDGEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLAL 99 (301)
T ss_dssp -------CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHH
Confidence 34566777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccHHHHHHHhhcCCCC--------CChHHHHHHHHHhhhcCccccC
Q 022340 86 SMGNEKSNSYWEAELPPN--------YDRVGIENFIRAKYEEKRWIPR 125 (298)
Q Consensus 86 ~~GN~~aN~~wEa~lPp~--------~d~~~~e~FIraKY~~k~F~~~ 125 (298)
.+||..+|.+||+.+|.. .+...++.||++||++++|...
T Consensus 100 ~~GN~~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~ 147 (301)
T 2b0o_E 100 NMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 147 (301)
T ss_dssp HCCHHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCC
T ss_pred HcCCHHHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcc
Confidence 999999999999988653 2356789999999999999764
No 12
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.98 E-value=3.3e-33 Score=269.66 Aligned_cols=119 Identities=38% Similarity=0.671 Sum_probs=107.0
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeecccchHhhHhhhhhhhcCCCccceeeecccCCCCHHHHHHHHhh
Q 022340 8 SKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSM 87 (298)
Q Consensus 8 sk~l~ar~ekiL~~Ll~~PgNk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~LG~hISkVKSltLD~Wt~eeV~~mk~~ 87 (298)
+..+++.++++|+.|++.|+|+.|+|||+++|+|+|+|+|||||++||||||+||+|||+||||+||.|+++++.+|+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~ 82 (497)
T 3lvq_E 3 DGEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNM 82 (497)
T ss_dssp -----CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTC
T ss_pred cchhHHHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHH
Confidence 34578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHhhcCCCC--------CChHHHHHHHHHhhhcCccccCC
Q 022340 88 GNEKSNSYWEAELPPN--------YDRVGIENFIRAKYEEKRWIPRG 126 (298)
Q Consensus 88 GN~~aN~~wEa~lPp~--------~d~~~~e~FIraKY~~k~F~~~~ 126 (298)
||..+|.+||+.+|.. .+...+++||++||+++.|..+.
T Consensus 83 GN~~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~~ 129 (497)
T 3lvq_E 83 GNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRC 129 (497)
T ss_dssp CHHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred hhHHHHHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhcccccccc
Confidence 9999999999998642 23457899999999999998754
No 13
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.97 E-value=1.9e-32 Score=246.99 Aligned_cols=115 Identities=37% Similarity=0.702 Sum_probs=105.5
Q ss_pred HHHHHHHHHHhcCCCCCCCcCCCCCCCCeeecccchHhhHhhhhhhhcCCCccceeeecccCCCCHHHHHHHHhhccHHH
Q 022340 13 AKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKS 92 (298)
Q Consensus 13 ar~ekiL~~Ll~~PgNk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~LG~hISkVKSltLD~Wt~eeV~~mk~~GN~~a 92 (298)
++++++|+.|++.|+|+.|+|||+.+|.|+|+|||+|||++|||+||.||+|||+|||++||.|+++++.+|..+||..+
T Consensus 2 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~ 81 (278)
T 1dcq_A 2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGF 81 (278)
T ss_dssp -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHH
T ss_pred chHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCC--------CChHHHHHHHHHhhhcCccccCCC
Q 022340 93 NSYWEAELPPN--------YDRVGIENFIRAKYEEKRWIPRGG 127 (298)
Q Consensus 93 N~~wEa~lPp~--------~d~~~~e~FIraKY~~k~F~~~~~ 127 (298)
|+|||+.+|.. .+...+++||++||..++|.....
T Consensus 82 n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~ 124 (278)
T 1dcq_A 82 NEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKH 124 (278)
T ss_dssp HHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCS
T ss_pred HHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccc
Confidence 99999988632 245678999999999999986543
No 14
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.2e-30 Score=242.72 Aligned_cols=92 Identities=39% Similarity=0.739 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeecccchHhhHhhhhhhhcCCCccceeeecccCCCCHHHHHHHHhhcc
Q 022340 10 ELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGN 89 (298)
Q Consensus 10 ~l~ar~ekiL~~Ll~~PgNk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~LG~hISkVKSltLD~Wt~eeV~~mk~~GN 89 (298)
..+.+++++|+.|++.|+|+.|||||+++|.|||+|||||||++|||+||+||+|||+||||+||+|++++|++|+.+||
T Consensus 19 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN 98 (329)
T 3o47_A 19 MASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGN 98 (329)
T ss_dssp ----CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCH
T ss_pred cCCHHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCC
Q 022340 90 EKSNSYWEAELP 101 (298)
Q Consensus 90 ~~aN~~wEa~lP 101 (298)
.++|+|||++..
T Consensus 99 ~~~n~~~e~~~~ 110 (329)
T 3o47_A 99 AKFREFLESQED 110 (329)
T ss_dssp HHHHHHHHTCSS
T ss_pred HHHHHHHHhcCC
Confidence 999999998753
No 15
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=89.03 E-value=0.38 Score=42.45 Aligned_cols=76 Identities=18% Similarity=0.444 Sum_probs=48.1
Q ss_pred CCCCCCCcCCCCCCCCeeecccchHhhHhhhhhhhcCCCccceeeecccCCCCHHHHHHHHhhccHHHHHHHhhcCCCCC
Q 022340 25 LPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNY 104 (298)
Q Consensus 25 ~PgNk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~LG~hISkVKSltLD~Wt~eeV~~mk~~GN~~aN~~wEa~lPp~~ 104 (298)
.|.-..|+.||.+...|.+...|.|+|..|...+ .++.+++..|+.+-+.....+..-.+++.
T Consensus 147 ~p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~----------------~l~~~~l~~l~~l~~~~~~~~~~~~~~~~- 209 (244)
T 1u5k_A 147 IPQTARCARCGAPDPEHPDPLGGQLLCSKCAALP----------------PYPPAVLDFLRHAVRRTVRASFEQPVPSA- 209 (244)
T ss_dssp CCCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC----------------CCCHHHHHHHHHTTTSCHHHHHHSCCCGG-
T ss_pred CCCcCccccCCCCCCCcEecccCEEECcccCCCC----------------CCCHHHHHHHHHHHhCCHHHHhhCCCCHH-
Confidence 3666799999998777899999999999985321 35778888887654443333333333321
Q ss_pred ChHHHHHHHHHhh
Q 022340 105 DRVGIENFIRAKY 117 (298)
Q Consensus 105 d~~~~e~FIraKY 117 (298)
.....+++++.=|
T Consensus 210 ~~~~~~~ll~~~~ 222 (244)
T 1u5k_A 210 DRPALWRALEKFV 222 (244)
T ss_dssp GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 2233444444433
No 16
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=78.43 E-value=1.2 Score=31.08 Aligned_cols=38 Identities=34% Similarity=0.790 Sum_probs=31.7
Q ss_pred CCCCCCcCCCCC-CCCeeecccchHhhHhhhhhhhcCCC
Q 022340 26 PENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (298)
Q Consensus 26 PgNk~CADCGa~-~P~WaSln~GVFlC~~CSgiHR~LG~ 63 (298)
.....|++|++. -|.|=.-..|..||-.|.-.++..|+
T Consensus 2 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 40 (46)
T 1gnf_A 2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQ 40 (46)
T ss_dssp CCSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCS
T ss_pred CCCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCC
Confidence 356889999987 57899988999999999887777664
No 17
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=70.75 E-value=2 Score=31.72 Aligned_cols=39 Identities=18% Similarity=0.427 Sum_probs=32.3
Q ss_pred CCCCCCCcCCCCC-CCCeeecccchHhhHhhhhhhhcCCC
Q 022340 25 LPENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (298)
Q Consensus 25 ~PgNk~CADCGa~-~P~WaSln~GVFlC~~CSgiHR~LG~ 63 (298)
......|++|+.. -|.|=.-..|-.||-.|.-..+..|+
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 43 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence 3567899999987 57999989999999999877776664
No 18
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=70.25 E-value=2.1 Score=29.27 Aligned_cols=35 Identities=26% Similarity=0.612 Sum_probs=29.1
Q ss_pred CCCcCCCCC-CCCeeecccchHhhHhhhhhhhcCCC
Q 022340 29 RECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (298)
Q Consensus 29 k~CADCGa~-~P~WaSln~GVFlC~~CSgiHR~LG~ 63 (298)
+.|++|+.. -|.|=.-..|-.||-.|.-..+.-|+
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 37 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCC
Confidence 479999987 57999999999999999877666553
No 19
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=66.80 E-value=3.1 Score=30.96 Aligned_cols=38 Identities=24% Similarity=0.541 Sum_probs=31.9
Q ss_pred CCCCCCcCCCCC-CCCeeecccchHhhHhhhhhhhcCCC
Q 022340 26 PENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (298)
Q Consensus 26 PgNk~CADCGa~-~P~WaSln~GVFlC~~CSgiHR~LG~ 63 (298)
.+...|++|+.. -|.|-.-.-|-.||-.|.-..+..|.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 45 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCC
Confidence 456899999986 68999998999999999877776654
No 20
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=64.18 E-value=2.7 Score=34.11 Aligned_cols=36 Identities=33% Similarity=0.804 Sum_probs=29.3
Q ss_pred CCCCcCCCCC-CCCeeecccchHhhHhhhhhhhcCCC
Q 022340 28 NRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (298)
Q Consensus 28 Nk~CADCGa~-~P~WaSln~GVFlC~~CSgiHR~LG~ 63 (298)
-+.|++||+. -|.|=.-.-|-+||-.|.-.++..|.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~ 41 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQ 41 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhccc
Confidence 4789999986 68999888899999999877765443
No 21
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=60.23 E-value=4 Score=34.57 Aligned_cols=35 Identities=11% Similarity=0.252 Sum_probs=24.6
Q ss_pred CCCCCCCcCCCCCCCC-eeecccchHhhHhhhhhhh
Q 022340 25 LPENRECADCKAKGPR-WASVNLGIFICMQCSGIHR 59 (298)
Q Consensus 25 ~PgNk~CADCGa~~P~-WaSln~GVFlC~~CSgiHR 59 (298)
.....+|.+||.+=|. -.-.--++-+|+.|...|-
T Consensus 108 ~g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~E 143 (151)
T 1tjl_A 108 DEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAE 143 (151)
T ss_dssp TTCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHHH
T ss_pred CCCCceeCCCCCcchHHHHhcCCCcchhHHHHHHHH
Confidence 4567899999997331 2223347889999998764
No 22
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=59.30 E-value=1.5 Score=35.62 Aligned_cols=33 Identities=24% Similarity=0.558 Sum_probs=23.2
Q ss_pred CCCCCcCCCCCCC-CeeecccchHhhHhhhhhhh
Q 022340 27 ENRECADCKAKGP-RWASVNLGIFICMQCSGIHR 59 (298)
Q Consensus 27 gNk~CADCGa~~P-~WaSln~GVFlC~~CSgiHR 59 (298)
...+|.+||.+=| .-.-.--++-+|+.|...+-
T Consensus 55 syG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~E 88 (108)
T 2kgo_A 55 SLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 88 (108)
T ss_dssp CCSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHHH
T ss_pred cCceecccCCcccHHHHhcCCCccccHHHHHHHH
Confidence 3689999999733 22233446889999998764
No 23
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=51.95 E-value=3.8 Score=30.93 Aligned_cols=36 Identities=22% Similarity=0.581 Sum_probs=28.6
Q ss_pred CCCCCcCCCCC-CCCeee--cccchHhhHhhhhhhhcCCC
Q 022340 27 ENRECADCKAK-GPRWAS--VNLGIFICMQCSGIHRSLGV 63 (298)
Q Consensus 27 gNk~CADCGa~-~P~WaS--ln~GVFlC~~CSgiHR~LG~ 63 (298)
....|++|+.. -|.|=. -.-| .||-.|.-.++..|+
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~ 45 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNK 45 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHS
T ss_pred CCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCC
Confidence 45789999986 589988 6777 899999877777664
No 24
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=49.81 E-value=3.2 Score=33.78 Aligned_cols=31 Identities=13% Similarity=0.371 Sum_probs=24.1
Q ss_pred CCCCCcCCCCCCCC-eeecccchHhhHhhhhh
Q 022340 27 ENRECADCKAKGPR-WASVNLGIFICMQCSGI 57 (298)
Q Consensus 27 gNk~CADCGa~~P~-WaSln~GVFlC~~CSgi 57 (298)
+.-.|.+||...-. |..-+||+-||..|...
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhccc
Confidence 45679999987433 34569999999999865
No 25
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=41.89 E-value=8.2 Score=29.75 Aligned_cols=30 Identities=17% Similarity=0.582 Sum_probs=24.5
Q ss_pred CCCCCcCCCCCCCCeeecccchHhhHhhhhhhh
Q 022340 27 ENRECADCKAKGPRWASVNLGIFICMQCSGIHR 59 (298)
Q Consensus 27 gNk~CADCGa~~P~WaSln~GVFlC~~CSgiHR 59 (298)
|+..|.=||.... ...||++.|..|.+.-|
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFR 30 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFK 30 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhh
Confidence 5788999998754 45899999999999776
No 26
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=37.01 E-value=17 Score=27.50 Aligned_cols=40 Identities=23% Similarity=0.437 Sum_probs=31.0
Q ss_pred HHHHHHHH-hcCCCCCCCcCCCCCCCCeeecccchHhhHhhhh
Q 022340 15 HRKILDGL-LKLPENRECADCKAKGPRWASVNLGIFICMQCSG 56 (298)
Q Consensus 15 ~ekiL~~L-l~~PgNk~CADCGa~~P~WaSln~GVFlC~~CSg 56 (298)
.++.+.++ ..+.....|.-||.....+.. .||..|..|.-
T Consensus 13 lRK~vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~ 53 (73)
T 1ffk_W 13 IRVRVRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGY 53 (73)
T ss_pred HHHHHHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCc
Confidence 45566666 567889999999988777665 59999999943
No 27
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=36.88 E-value=18 Score=29.22 Aligned_cols=38 Identities=18% Similarity=0.457 Sum_probs=32.0
Q ss_pred CCCCCCcCCCCC-CCCeeecccchHhhHhhhhhhhcCCC
Q 022340 26 PENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (298)
Q Consensus 26 PgNk~CADCGa~-~P~WaSln~GVFlC~~CSgiHR~LG~ 63 (298)
.....|++|+.. -|.|=.-..|-.||-.|.-..+..|.
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~ 95 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 95 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCC
Confidence 456899999986 69999999999999999877776664
No 28
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=36.55 E-value=14 Score=29.36 Aligned_cols=29 Identities=24% Similarity=0.588 Sum_probs=23.8
Q ss_pred CCCcCCCCCCCCeeecccchHhhHhhhhhhhc
Q 022340 29 RECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (298)
Q Consensus 29 k~CADCGa~~P~WaSln~GVFlC~~CSgiHR~ 60 (298)
..|.=||.+.. ...||++.|..|++..|-
T Consensus 2 ~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 30 (103)
T 2nll_B 2 ELCVVCGDKAT---GYHYRCITCEGCKGFFRR 30 (103)
T ss_dssp CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCeEeCCcCc---CeecCcccHHHhhhhhee
Confidence 56899997654 458999999999998874
No 29
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=33.95 E-value=17 Score=34.74 Aligned_cols=32 Identities=28% Similarity=0.625 Sum_probs=25.4
Q ss_pred CCCCCCcCCCCCCCCeeecccchHhhHhhhhhhhc
Q 022340 26 PENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (298)
Q Consensus 26 PgNk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~ 60 (298)
..+..|.=||..... ..|||+.|..|.+..|-
T Consensus 48 ~~~~~C~vC~~~~~g---~hygv~~C~~C~~FFrR 79 (419)
T 3dzy_D 48 LMAIECRVCGDKASG---FHYGVHACEGCKGFFRR 79 (419)
T ss_dssp --CCCCSSSCSCCCS---BCSSSBCCHHHHHHHHH
T ss_pred CCCCcCeECCCcCCC---CccCcccchhhhHHHcc
Confidence 446789999987664 48999999999998763
No 30
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=33.89 E-value=12 Score=30.71 Aligned_cols=26 Identities=8% Similarity=0.160 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHhhccHHHHHHHhhcC
Q 022340 75 TWLPEQVAVIQSMGNEKSNSYWEAEL 100 (298)
Q Consensus 75 ~Wt~eeV~~mk~~GN~~aN~~wEa~l 100 (298)
.|+++|+++|+.+++..+-++-.+.+
T Consensus 132 ~w~~~ei~ll~~lA~ql~iAi~qa~l 157 (171)
T 4glq_A 132 QWQEIEIDQFSELASTGSLVLERLHF 157 (171)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999888877654
No 31
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=33.51 E-value=18 Score=27.97 Aligned_cols=32 Identities=25% Similarity=0.624 Sum_probs=26.3
Q ss_pred CCCCCCcCCCCCCCCeeecccchHhhHhhhhhhhc
Q 022340 26 PENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (298)
Q Consensus 26 PgNk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~ 60 (298)
+.+..|.=||.+.. ...||++.|..|++..|-
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (89)
T 2ebl_A 5 SSGIECVVCGDKSS---GKHYGQFTCEGCKSFFKR 36 (89)
T ss_dssp CSSCBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCcEeCCCCc---ceEeCchhhHHhhhhhhe
Confidence 45678999998755 458999999999998874
No 32
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=31.40 E-value=17 Score=29.44 Aligned_cols=31 Identities=19% Similarity=0.591 Sum_probs=25.8
Q ss_pred CCCCCcCCCCCCCCeeecccchHhhHhhhhhhhc
Q 022340 27 ENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (298)
Q Consensus 27 gNk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~ 60 (298)
....|.=||.... ...||++.|..|++..|-
T Consensus 7 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 37 (119)
T 2han_B 7 QEELCLVCGDRAS---GYHYNALTCEGCKGFFRR 37 (119)
T ss_dssp CSCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCeEeCCcCC---cceECchhHHhhHHhhhh
Confidence 4678999998654 569999999999998874
No 33
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=30.99 E-value=18 Score=27.66 Aligned_cols=31 Identities=26% Similarity=0.687 Sum_probs=25.6
Q ss_pred CCCCCcCCCCCCCCeeecccchHhhHhhhhhhhc
Q 022340 27 ENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (298)
Q Consensus 27 gNk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~ 60 (298)
+...|.=||.+.. ...||++.|..|++..|-
T Consensus 3 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (84)
T 1hcq_A 3 ETRYCAVCNDYAS---GYHYGVWSCEGCKAFFKR 33 (84)
T ss_dssp CCCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCcEECCCCC---CeeeCccchHHhhhhhhh
Confidence 4578999997654 569999999999998874
No 34
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=30.81 E-value=16 Score=29.06 Aligned_cols=33 Identities=18% Similarity=0.613 Sum_probs=25.7
Q ss_pred CCCCCCCcCCCCCCCCeeecccchHhhHhhhhhhhc
Q 022340 25 LPENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (298)
Q Consensus 25 ~PgNk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~ 60 (298)
.+....|.=||... ....||++.|..|++..|-
T Consensus 4 ~~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 36 (105)
T 1r4i_A 4 FPPQKTCLICGDEA---SGAHYGALTCGSCKVFFKR 36 (105)
T ss_dssp --CCCBCSSSCSBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---CceEeCCcchhhhhhhhce
Confidence 35578899999754 3568999999999998874
No 35
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=30.77 E-value=20 Score=27.44 Aligned_cols=29 Identities=28% Similarity=0.734 Sum_probs=23.4
Q ss_pred CCCcCCCCCCCCeeecccchHhhHhhhhhhhc
Q 022340 29 RECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (298)
Q Consensus 29 k~CADCGa~~P~WaSln~GVFlC~~CSgiHR~ 60 (298)
..|.=||.+.. ...||++.|..|++..|-
T Consensus 5 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (86)
T 1dsz_A 5 KPCFVCQDKSS---GYHYGVSACEGCKGFFRR 33 (86)
T ss_dssp -CCTTTCSCCC---SEETTEECCHHHHHHHHH
T ss_pred CCCcEECCCcc---ceeeCchhHHHHHHHHHH
Confidence 46999998764 358999999999998874
No 36
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=29.77 E-value=16 Score=26.03 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=20.2
Q ss_pred CCCcCCCCCCCCeeecccchHhhHhhhhh
Q 022340 29 RECADCKAKGPRWASVNLGIFICMQCSGI 57 (298)
Q Consensus 29 k~CADCGa~~P~WaSln~GVFlC~~CSgi 57 (298)
..|-+|+..... ....-|..+|..|.-+
T Consensus 12 ~~Cp~C~~~~lv-~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 12 VTCPNHPDAILV-EDYRAGDMICPECGLV 39 (58)
T ss_dssp CSBTTBSSSCCE-ECSSSCCEECTTTCCE
T ss_pred ccCcCCCCCcee-EeCCCCeEEeCCCCCE
Confidence 479999986632 2446799999999443
No 37
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=29.50 E-value=20 Score=28.79 Aligned_cols=30 Identities=23% Similarity=0.667 Sum_probs=24.3
Q ss_pred CCCCcCCCCCCCCeeecccchHhhHhhhhhhhc
Q 022340 28 NRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (298)
Q Consensus 28 Nk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~ 60 (298)
...|.=||.... ...||++.|..|++..|-
T Consensus 6 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 35 (110)
T 1kb2_A 6 PRICGVCGDRAT---GFHFNAMTCEGCKGFFRR 35 (110)
T ss_dssp -CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCcEeCCCCC---ceEeCchhHhhhhhhhee
Confidence 467999998764 358999999999998874
No 38
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein ST initiative; NMR {Agrobacterium tumefaciens str}
Probab=28.62 E-value=11 Score=30.07 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=21.7
Q ss_pred CCCCCCCcCCCCCCCC-eeecccchHhhHhhhh
Q 022340 25 LPENRECADCKAKGPR-WASVNLGIFICMQCSG 56 (298)
Q Consensus 25 ~PgNk~CADCGa~~P~-WaSln~GVFlC~~CSg 56 (298)
...-.+|.+||.+=|. -.-.--++-.|+.|..
T Consensus 78 ~g~yg~C~~Cg~~I~~~Rl~a~P~a~~Ci~Cq~ 110 (112)
T 2kq9_A 78 SGTFGTCVKCGKRISEDRLKAVPYTPFCQECAA 110 (112)
T ss_dssp HTCCSEETTTTEECCHHHHHHCSCCSSCHHHHH
T ss_pred CCCcCeeCCCCCcccHHHHhcCCCcchhHHHHh
Confidence 4778999999987331 1122336778999975
No 39
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=28.60 E-value=22 Score=29.43 Aligned_cols=33 Identities=12% Similarity=0.277 Sum_probs=24.6
Q ss_pred CCCCCCcCCCCC-----CCCeeecccchHhhHhhhhhh
Q 022340 26 PENRECADCKAK-----GPRWASVNLGIFICMQCSGIH 58 (298)
Q Consensus 26 PgNk~CADCGa~-----~P~WaSln~GVFlC~~CSgiH 58 (298)
.+...|+-|+.+ +..-.+..-...||..|.+.+
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCcc
Confidence 577899999986 344456677778888887765
No 40
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=27.44 E-value=20 Score=27.92 Aligned_cols=31 Identities=19% Similarity=0.692 Sum_probs=25.1
Q ss_pred CCCCCcCCCCCCCCeeecccchHhhHhhhhhhhc
Q 022340 27 ENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (298)
Q Consensus 27 gNk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~ 60 (298)
....|.=||.... ...||++.|..|++..|-
T Consensus 9 ~~~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 39 (93)
T 2han_A 9 SKHLCSICGDRAS---GKHYGVYSCEGCKGFFKR 39 (93)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCCCcEeCCCCc---CeecCcchhHHHHHHHHh
Confidence 3578999998654 569999999999998764
No 41
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.05 E-value=31 Score=26.99 Aligned_cols=30 Identities=23% Similarity=0.557 Sum_probs=20.0
Q ss_pred CCCCCCcCCCCC-------CCC----------eeecccchHhhHhhhh
Q 022340 26 PENRECADCKAK-------GPR----------WASVNLGIFICMQCSG 56 (298)
Q Consensus 26 PgNk~CADCGa~-------~P~----------WaSln~GVFlC~~CSg 56 (298)
+.--.|+|||.. -|. -++=.|| .+|..|-.
T Consensus 31 ~~~pkC~~cg~~L~Gi~~~Rp~~~~rlsK~~KtvsRaYG-~lC~~Cvr 77 (89)
T 3j21_d 31 PKIAHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMP-HLCPRCMR 77 (89)
T ss_dssp CCCCBCSSSCCBCTTCCCCCTTGGGGSCHHHHCCSSSCT-TSCHHHHH
T ss_pred CCCCCCCCCCCccCCccCccHHHHHhcccCCCCcCCCcc-cchHHHHH
Confidence 334469999985 111 3355789 99999953
No 42
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=27.00 E-value=18 Score=28.42 Aligned_cols=30 Identities=23% Similarity=0.727 Sum_probs=23.4
Q ss_pred CCCCcCCCCCCCCeeecccchHhhHhhhhhhhc
Q 022340 28 NRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (298)
Q Consensus 28 Nk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~ 60 (298)
...|.=||.+.. ...||++.|..|.+..|-
T Consensus 3 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 32 (99)
T 1ynw_B 3 KHICAICGDRSS---GKHYGVYSCEGCKGFFKR 32 (99)
T ss_dssp --CBTTTBSCCC---BCCTTSCBCSHHHHHHHH
T ss_pred CCCCceeCCCCc---ceeeCccchHHHHHHHHh
Confidence 357999997654 458999999999998874
No 43
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=26.17 E-value=29 Score=26.76 Aligned_cols=28 Identities=25% Similarity=0.702 Sum_probs=23.0
Q ss_pred CCcCCCCCCCCeeecccchHhhHhhhhhhhc
Q 022340 30 ECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (298)
Q Consensus 30 ~CADCGa~~P~WaSln~GVFlC~~CSgiHR~ 60 (298)
.|.=||.... ...||++.|..|++..|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (89)
T 1cit_A 2 RCAVCGDNAS---CQHYGVRTCEGCKGFFKR 29 (89)
T ss_dssp CCSSSCCCCC---EEETTEEECHHHHHHHHH
T ss_pred CCeEeCCCCc---ceEeCccchhhhhhhcee
Confidence 5888997654 468999999999998864
No 44
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=25.69 E-value=20 Score=29.09 Aligned_cols=34 Identities=15% Similarity=0.474 Sum_probs=23.9
Q ss_pred hcCCCCCCCcCCCCCCCCeeecccchHhhHhhhhhhh
Q 022340 23 LKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHR 59 (298)
Q Consensus 23 l~~PgNk~CADCGa~~P~WaSln~GVFlC~~CSgiHR 59 (298)
........|.=||.... ...||++.|..|.+.-|
T Consensus 24 ~~~~~~~~C~VCgd~a~---G~HyGv~sC~aCk~FFR 57 (117)
T 4hn5_A 24 ASNAPPKLCLVCSDEAS---GCHYGVLTCGSCKVFFK 57 (117)
T ss_dssp ------CBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCCCCCcCCcCCCcCc---ccccCCcccchhhhhhh
Confidence 34456788999998764 45899999999999775
No 45
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=25.01 E-value=17 Score=29.36 Aligned_cols=33 Identities=21% Similarity=0.547 Sum_probs=24.4
Q ss_pred CCCCCCCcCCCCCCCCeeecccchHhhHhhhhhhhc
Q 022340 25 LPENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (298)
Q Consensus 25 ~PgNk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~ 60 (298)
.+....|.=||.+.. ...|||+.|..|++..|-
T Consensus 6 ~~~~~~C~VCgd~a~---G~HyGv~sC~aCk~FFRR 38 (113)
T 2a66_A 6 EDLEELCPVCGDKVS---GYHYGLLTCESCKGFFKR 38 (113)
T ss_dssp ----CBCTTTCCBEE---EEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCcEeCCCCc---ceeeCcccHHHHHHHHhh
Confidence 345678999997643 569999999999998874
No 46
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=24.21 E-value=19 Score=27.52 Aligned_cols=31 Identities=23% Similarity=0.702 Sum_probs=25.0
Q ss_pred CCCCCcCCCCCCCCeeecccchHhhHhhhhhhhc
Q 022340 27 ENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (298)
Q Consensus 27 gNk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~ 60 (298)
.+..|.=||.+.. ...||++.|..|++..|-
T Consensus 4 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 34 (85)
T 1dsz_B 4 TKHICAICGDRSS---GKHYGVYSCEGCKGFFKR 34 (85)
T ss_dssp CCEECTTTCCEES---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCEeCCCCC---ceeeCccchHHHHHHHHH
Confidence 4567999997654 358999999999998874
No 47
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=22.85 E-value=28 Score=27.11 Aligned_cols=30 Identities=23% Similarity=0.612 Sum_probs=24.3
Q ss_pred CCCCcCCCCCCCCeeecccchHhhHhhhhhhhc
Q 022340 28 NRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (298)
Q Consensus 28 Nk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~ 60 (298)
...|.=||.+.. ...||++.|..|.+..|-
T Consensus 7 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (94)
T 1a6y_A 7 VLLCKVCGDVAS---GFHYGVLACEGCKGFFRR 36 (94)
T ss_dssp -CBCTTTSSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCcCcEeCCCCc---ceEeCccchhhhhhehhe
Confidence 467999997654 568999999999998874
No 48
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=21.82 E-value=32 Score=25.81 Aligned_cols=28 Identities=29% Similarity=0.630 Sum_probs=22.6
Q ss_pred CCcCCCCCCCCeeecccchHhhHhhhhhhhc
Q 022340 30 ECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (298)
Q Consensus 30 ~CADCGa~~P~WaSln~GVFlC~~CSgiHR~ 60 (298)
.|.=||.+.. ...||++.|..|++..|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (78)
T 3cbb_A 2 LCAICGDRAT---GKHYGASSCDGCKGFFRR 29 (78)
T ss_dssp BCTTTSSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCeEeCCCCC---ceEeCCcchhhhceeeeE
Confidence 4788887654 358999999999998874
No 49
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=21.60 E-value=19 Score=28.24 Aligned_cols=30 Identities=20% Similarity=0.555 Sum_probs=24.6
Q ss_pred CCCCcCCCCCCCCeeecccchHhhHhhhhhhhc
Q 022340 28 NRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (298)
Q Consensus 28 Nk~CADCGa~~P~WaSln~GVFlC~~CSgiHR~ 60 (298)
...|.=||.... ...||++.|..|++..|-
T Consensus 4 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (98)
T 1lo1_A 4 KRLCLVCGDIAS---GYHYGVASCEACKAFFKR 33 (98)
T ss_dssp CCEETTTTEECS---EESSSSEECHHHHHHHHH
T ss_pred CCCCcEeCCCCc---CeeeCccchhhhhhhhee
Confidence 467899997653 568999999999998874
No 50
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=21.46 E-value=21 Score=34.82 Aligned_cols=30 Identities=23% Similarity=0.712 Sum_probs=24.5
Q ss_pred CCCCCcCCCCCCCCeeecccchHhhHhhhhhhh
Q 022340 27 ENRECADCKAKGPRWASVNLGIFICMQCSGIHR 59 (298)
Q Consensus 27 gNk~CADCGa~~P~WaSln~GVFlC~~CSgiHR 59 (298)
.+..|.=||..... ..|||..|..|.+..|
T Consensus 136 ~~~~C~VCg~~a~g---~hygv~sC~~Ck~FFr 165 (467)
T 3dzy_A 136 TKHICAICGDRSSG---KHYGVYSCEGCKGFFK 165 (467)
T ss_dssp -CEECTTTSSEECS---EETTEECCHHHHHHHH
T ss_pred CCCcceeCCCCCCC---CcCCCcchhhhhHhcc
Confidence 45679999987654 4899999999999876
No 51
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=20.25 E-value=29 Score=26.89 Aligned_cols=27 Identities=33% Similarity=0.812 Sum_probs=20.9
Q ss_pred CCCCCcCCCCCCCC-eeecc--cchHhhHh
Q 022340 27 ENRECADCKAKGPR-WASVN--LGIFICMQ 53 (298)
Q Consensus 27 gNk~CADCGa~~P~-WaSln--~GVFlC~~ 53 (298)
....|.+|+..+.. |+++. -|-+-|.+
T Consensus 24 ~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 24 SLGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TTTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 45789999966655 99888 88888843
Done!