Query 022341
Match_columns 298
No_of_seqs 125 out of 1224
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 02:47:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022341.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022341hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156 Cytochrome P450 CYP2 s 100.0 1.8E-44 3.9E-49 325.9 28.7 262 31-298 25-301 (489)
2 PLN02971 tryptophan N-hydroxyl 100.0 9.7E-34 2.1E-38 263.4 29.1 266 29-298 54-342 (543)
3 PLN02394 trans-cinnamate 4-mon 100.0 2.2E-33 4.8E-38 259.3 29.0 275 23-298 21-308 (503)
4 PLN02687 flavonoid 3'-monooxyg 100.0 1.6E-31 3.4E-36 247.5 27.2 283 9-298 8-312 (517)
5 PLN03234 cytochrome P450 83B1; 100.0 1.1E-30 2.3E-35 241.2 27.8 275 18-298 14-303 (499)
6 PLN02183 ferulate 5-hydroxylas 100.0 6.8E-31 1.5E-35 243.2 25.9 259 27-298 31-319 (516)
7 PLN03112 cytochrome P450 famil 100.0 2.3E-30 5E-35 239.8 27.2 276 16-298 16-311 (514)
8 PLN00110 flavonoid 3',5'-hydro 100.0 5E-30 1.1E-34 236.5 29.1 281 11-298 9-304 (504)
9 PLN00168 Cytochrome P450; Prov 100.0 3.8E-30 8.3E-35 238.4 28.3 263 28-298 31-321 (519)
10 PLN02655 ent-kaurene oxidase 100.0 3.6E-30 7.9E-35 235.6 24.2 262 34-298 1-277 (466)
11 PLN03018 homomethionine N-hydr 100.0 2.5E-29 5.4E-34 232.8 28.4 266 30-298 38-329 (534)
12 PLN02966 cytochrome P450 83A1 100.0 4.3E-29 9.4E-34 230.5 26.6 270 24-298 21-304 (502)
13 PTZ00404 cytochrome P450; Prov 100.0 5.7E-28 1.2E-32 222.2 24.6 259 29-298 26-298 (482)
14 KOG0158 Cytochrome P450 CYP3/C 100.0 2.5E-28 5.4E-33 218.7 21.5 279 12-298 10-309 (499)
15 PLN02290 cytokinin trans-hydro 100.0 5.1E-28 1.1E-32 224.3 23.8 253 32-298 42-331 (516)
16 PLN02500 cytochrome P450 90B1 100.0 1E-26 2.2E-31 214.2 25.0 249 27-298 33-294 (490)
17 KOG0157 Cytochrome P450 CYP4/C 99.9 7.2E-26 1.6E-30 207.9 23.2 255 30-298 33-306 (497)
18 PLN02774 brassinosteroid-6-oxi 99.9 6E-26 1.3E-30 207.6 21.0 244 29-298 28-279 (463)
19 PF00067 p450: Cytochrome P450 99.9 5.6E-27 1.2E-31 213.2 14.0 258 34-297 1-276 (463)
20 PLN02196 abscisic acid 8'-hydr 99.9 1.6E-25 3.5E-30 204.7 22.9 240 28-298 31-279 (463)
21 PLN02987 Cytochrome P450, fami 99.9 2.8E-25 6.1E-30 203.1 22.9 250 20-298 18-282 (472)
22 PLN02169 fatty acid (omega-1)- 99.9 4.7E-25 1E-29 203.2 23.5 252 35-298 34-316 (500)
23 PLN02302 ent-kaurenoic acid ox 99.9 6.5E-24 1.4E-28 195.8 26.8 246 28-298 38-302 (490)
24 PLN03141 3-epi-6-deoxocathaste 99.9 1.3E-24 2.8E-29 198.3 20.6 244 29-298 4-266 (452)
25 PLN03195 fatty acid omega-hydr 99.9 1.9E-23 4.1E-28 193.7 23.0 157 34-198 32-194 (516)
26 PLN02738 carotene beta-ring hy 99.9 6.9E-22 1.5E-26 185.8 23.4 246 42-298 141-406 (633)
27 PLN02936 epsilon-ring hydroxyl 99.9 7.3E-22 1.6E-26 181.8 21.9 160 33-198 13-178 (489)
28 KOG0159 Cytochrome P450 CYP11/ 99.9 2.5E-20 5.3E-25 164.7 20.2 168 29-198 47-224 (519)
29 PLN02426 cytochrome P450, fami 99.8 2.4E-17 5.2E-22 152.1 23.0 247 39-298 48-308 (502)
30 PLN02648 allene oxide synthase 99.7 9.5E-17 2.1E-21 146.6 11.7 161 31-197 16-194 (480)
31 KOG0684 Cytochrome P450 [Secon 99.6 5.5E-13 1.2E-17 116.1 20.7 245 32-298 31-288 (486)
32 COG2124 CypX Cytochrome P450 [ 99.5 3E-13 6.6E-18 121.8 16.9 214 56-298 26-251 (411)
33 KOG0114 Predicted RNA-binding 79.0 11 0.00025 26.7 6.1 58 33-93 13-76 (124)
34 PF05393 Hum_adeno_E3A: Human 72.2 9.1 0.0002 26.0 4.1 27 14-44 45-71 (94)
35 PF00076 RRM_1: RNA recognitio 72.2 14 0.0003 23.3 5.2 55 42-99 2-65 (70)
36 PF13893 RRM_5: RNA recognitio 68.2 13 0.00027 22.7 4.1 43 59-101 2-49 (56)
37 PLN03120 nucleic acid binding 66.8 27 0.0006 29.4 6.8 59 42-103 8-72 (260)
38 TIGR00847 ccoS cytochrome oxid 65.9 23 0.00049 21.6 4.6 37 1-37 1-37 (51)
39 PF01102 Glycophorin_A: Glycop 62.2 11 0.00024 27.7 3.3 19 12-30 77-95 (122)
40 smart00362 RRM_2 RNA recogniti 61.1 36 0.00078 20.9 5.8 40 54-93 12-58 (72)
41 PLN03134 glycine-rich RNA-bind 58.8 35 0.00076 25.9 5.7 59 41-102 37-105 (144)
42 PF12273 RCR: Chitin synthesis 54.8 18 0.00038 27.0 3.4 7 41-47 33-39 (130)
43 COG3197 FixS Uncharacterized p 53.7 24 0.00053 22.0 3.2 37 1-37 1-37 (58)
44 cd01646 RT_Bac_retron_I RT_Bac 52.3 31 0.00068 26.4 4.6 57 29-92 50-107 (158)
45 TIGR01661 ELAV_HUD_SF ELAV/HuD 51.1 44 0.00096 29.3 6.0 60 41-103 272-341 (352)
46 PRK00994 F420-dependent methyl 46.7 1.7E+02 0.0037 24.4 8.2 107 56-164 50-167 (277)
47 COG1927 Mtd Coenzyme F420-depe 46.6 1.6E+02 0.0035 24.0 7.9 123 40-164 34-167 (277)
48 PF15330 SIT: SHP2-interacting 45.1 79 0.0017 22.7 5.3 12 39-50 45-56 (107)
49 PF14259 RRM_6: RNA recognitio 44.5 32 0.0007 21.8 3.1 42 54-95 11-60 (70)
50 PF13625 Helicase_C_3: Helicas 44.1 64 0.0014 23.8 5.0 37 55-93 77-113 (129)
51 smart00360 RRM RNA recognition 43.4 74 0.0016 19.2 5.6 39 55-93 10-57 (71)
52 PHA02681 ORF089 virion membran 42.5 81 0.0018 21.3 4.6 24 1-24 1-25 (92)
53 KOG3653 Transforming growth fa 41.2 1.5E+02 0.0033 27.5 7.6 39 64-102 222-260 (534)
54 KOG0149 Predicted RNA-binding 37.7 41 0.00088 27.7 3.2 60 41-103 15-83 (247)
55 KOG0107 Alternative splicing f 37.0 54 0.0012 25.8 3.6 48 42-92 14-65 (195)
56 PF15050 SCIMP: SCIMP protein 29.7 1E+02 0.0023 22.4 3.8 20 5-24 13-32 (133)
57 PRK02302 hypothetical protein; 29.3 1.3E+02 0.0029 20.8 4.1 32 62-93 23-54 (89)
58 TIGR01659 sex-lethal sex-letha 27.6 2.4E+02 0.0052 25.0 6.7 49 54-102 120-178 (346)
59 PRK02886 hypothetical protein; 27.3 1.5E+02 0.0033 20.3 4.2 32 62-93 21-52 (87)
60 cd00590 RRM RRM (RNA recogniti 25.9 1.6E+02 0.0035 17.8 6.1 41 54-94 12-60 (74)
61 TIGR01628 PABP-1234 polyadenyl 25.5 2.4E+02 0.0052 26.7 6.8 59 41-102 288-355 (562)
62 PF15205 PLAC9: Placenta-speci 25.4 44 0.00096 21.5 1.2 8 31-38 57-64 (74)
63 PF08675 RNA_bind: RNA binding 25.1 1.3E+02 0.0029 20.5 3.5 36 58-93 25-61 (87)
64 TIGR01659 sex-lethal sex-letha 25.1 2E+02 0.0042 25.6 5.7 50 41-93 196-254 (346)
65 PLN03121 nucleic acid binding 24.6 3.4E+02 0.0073 22.7 6.5 58 42-102 9-72 (243)
66 TIGR01628 PABP-1234 polyadenyl 24.6 2.4E+02 0.0052 26.7 6.6 58 42-102 4-71 (562)
67 TIGR01622 SF-CC1 splicing fact 24.3 2.4E+02 0.0051 25.8 6.4 59 41-102 92-159 (457)
68 COG3924 Predicted membrane pro 22.8 1.6E+02 0.0035 19.3 3.4 9 35-43 37-45 (80)
69 TIGR01649 hnRNP-L_PTB hnRNP-L/ 22.5 3.4E+02 0.0074 25.2 7.1 59 42-102 279-342 (481)
70 cd01651 RT_G2_intron RT_G2_int 22.4 2E+02 0.0044 23.0 5.1 59 31-92 125-191 (226)
71 TIGR01645 half-pint poly-U bin 21.3 3.1E+02 0.0066 26.6 6.4 59 41-102 110-178 (612)
72 cd01648 TERT TERT: Telomerase 21.1 2.6E+02 0.0057 20.1 4.9 56 30-92 17-77 (119)
No 1
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.8e-44 Score=325.86 Aligned_cols=262 Identities=34% Similarity=0.529 Sum_probs=208.3
Q ss_pred CCCCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCc-chhhh
Q 022341 31 FKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN-VVFDI 109 (298)
Q Consensus 31 ~~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~-~~~~~ 109 (298)
.++||||+++|||||++++....+|..+.+|+++|||+|++|+|+.|+|||||+++|+|+|.+++..|++||.. ...+.
T Consensus 25 ~~lPPGP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~~~~~~~~ 104 (489)
T KOG0156|consen 25 RNLPPGPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPDPTATLKY 104 (489)
T ss_pred CCCCcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCCCCchhhHHH
Confidence 68999999999999999998766899999999999999999999999999999999999999999999999972 34456
Q ss_pred hccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHH-HHHHHHHHHHH
Q 022341 110 FTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRR-LQLMMYNNMYR 188 (298)
Q Consensus 110 ~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~i~~ 188 (298)
+.+++.++++++||+.||.+||+.+..+++.+..+++.+...+|++.+++.+.+ .+. . +++++.. +...+.|+||+
T Consensus 105 ~~~~~~~i~~a~yG~~Wr~~Rr~~~~~L~~~~~~~~~~~~R~~E~~~l~~~l~~-~~~-~-~~vdl~~~l~~~~~nvI~~ 181 (489)
T KOG0156|consen 105 LSYGGKGIVFAPYGDYWREMRRFALTELRSFGRGKSFMEIREEEVDELVKKLSK-SKK-G-EPVDLSELLDLLVGNVICR 181 (489)
T ss_pred hcCCCCceEeCCCcHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHHh-cCC-C-ceeeHHHHHHHHHHHHHHH
Confidence 665788899998999999999999999999999998888889999999999987 221 2 4677664 45556677999
Q ss_pred HHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccc-ccc--ccchhhHHHHHHHHHHHHHHHHHHHHHhcc---
Q 022341 189 IMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIP-ILR--PFLRGYLKICKEVKERRLQLFKDYFVEERN--- 262 (298)
Q Consensus 189 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p-~l~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--- 262 (298)
++||.+++.++++....++.+..+.......+ .+.|++| +++ ++..+..+..+.. .++++.+.++++++|.
T Consensus 182 ~~fG~rf~~~~~~~~~~~~~l~~~~~~~~~~~--~~~d~~p~~l~~~~~~~g~~~~~~~~-~~~~~~~~~~~i~eh~~~~ 258 (489)
T KOG0156|consen 182 MLFGRRFEEEDEEEFLELKELVEESLELLGSF--NLSDYFPFLLRWLDGISGLEKRLKKV-SKRLDEFLERIIDEHREKI 258 (489)
T ss_pred HHhCCccccCCchHHHHHHHHHHHHHHHhCCc--cHHHHhhHHHHhcccccHHHHHHHHH-HHHHHHHHHHHHHHHHhhh
Confidence 99999998765565665666665555554433 4568888 554 3233444444332 3446677777776652
Q ss_pred ----cCChHHHHHhhcc--cCC-CCHHHHHHHHHHHhhcccCC
Q 022341 263 ----LKCAIDHILDAQT--KGE-INEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 263 ----~~d~ld~ll~~~~--~~~-~t~~~i~~~~~~l~~aG~~~ 298 (298)
.+||+|.||+.++ +.. +|+++|+..+.|+++||++|
T Consensus 259 ~~~~~~D~vD~lL~~~~~~~~~~~t~~~i~~~~~dl~~AGtdT 301 (489)
T KOG0156|consen 259 GDEEGRDFVDALLKLMKEEKAEGLTDDHLKALILDLFLAGTDT 301 (489)
T ss_pred ccCCCCcHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccch
Confidence 1799999998643 223 99999999999999999985
No 2
>PLN02971 tryptophan N-hydroxylase
Probab=100.00 E-value=9.7e-34 Score=263.36 Aligned_cols=266 Identities=21% Similarity=0.352 Sum_probs=179.1
Q ss_pred CCCCCCCCCCCCccccccccCCCCcc-hHHHHHHHHHhC-CeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcch
Q 022341 29 KRFKLPPGPLPVPVFGNWLQVGDDLN-HRNLSDLAKKYG-DVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVV 106 (298)
Q Consensus 29 ~~~~~ppGP~~~PiiGnl~~l~~~~~-~~~~~~~~~~yG-~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~ 106 (298)
++.++||||+++|++||++++..+.+ +..+.+|+++|| ++|++|+|+.++|+++||++|++||.+++..|++||....
T Consensus 54 r~~~lPPGP~~lPiiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~rp~~~~ 133 (543)
T PLN02971 54 KLHPLPPGPTGFPIVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASRPLTYA 133 (543)
T ss_pred CCCCCCcCCCCCCcccchHHhccCCcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCCCcccc
Confidence 45678999999999999998754323 567899999999 8999999999999999999999999999999999986443
Q ss_pred hhhhccCC-CceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHHHHHH
Q 022341 107 FDIFTGKG-QDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQLMMYN 184 (298)
Q Consensus 107 ~~~~~~~~-~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~ 184 (298)
.. +.+++ .+++++++|+.||++||+++++++++...+.+.+.++++++.+++.+.+.... ++++++. .+...+++
T Consensus 134 ~~-~l~~~~~~~l~~~~G~~Wk~~Rk~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~vd~~~~~~~~t~~ 210 (543)
T PLN02971 134 QK-ILSNGYKTCVITPFGEQFKKMRKVIMTEIVCPARHRWLHDNRAEETDHLTAWLYNMVKN--SEPVDLRFVTRHYCGN 210 (543)
T ss_pred hh-hccCCCCceEecCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCceehHHHHHHHHHH
Confidence 33 33433 45678889999999999987778887777778888899999999888653221 2345654 45666677
Q ss_pred HHHHHHhccccCCC-----CchHHHHHHHHHHHHHhhhhccCCcccccccccccc-chhhHHHHHHHHHHHHHHHHHHHH
Q 022341 185 NMYRIMFDRRFESQ-----DDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPF-LRGYLKICKEVKERRLQLFKDYFV 258 (298)
Q Consensus 185 ~i~~~~fG~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i 258 (298)
+|++++||.++.+. +++..+.++...+.+..........+.+++|+++.+ ..+..+...+. .+....+....+
T Consensus 211 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~-~~~~~~~~~~~i 289 (543)
T PLN02971 211 AIKRLMFGTRTFSEKTEPDGGPTLEDIEHMDAMFEGLGFTFAFCISDYLPMLTGLDLNGHEKIMRES-SAIMDKYHDPII 289 (543)
T ss_pred HHHHHHhCCcccccccccccchhHHHHHHHHHHHHHHHhccCCcHHHhCCchhhhcccchHHHHHHH-HHHHHHHHHHHH
Confidence 79999999987432 112222222222222112111112244778876532 11111111111 111122222211
Q ss_pred Hh-------c---ccCChHHHHHhhccc-C--CCCHHHHHHHHHHHhhcccCC
Q 022341 259 EE-------R---NLKCAIDHILDAQTK-G--EINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 259 ~~-------~---~~~d~ld~ll~~~~~-~--~~t~~~i~~~~~~l~~aG~~~ 298 (298)
++ . ...||+|.|++..++ + .+|+++|++.+.++++||+++
T Consensus 290 ~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~ls~~~i~~~~~~l~~AG~dT 342 (543)
T PLN02971 290 DERIKMWREGKRTQIEDFLDIFISIKDEAGQPLLTADEIKPTIKELVMAAPDN 342 (543)
T ss_pred HHHHHHHhccCCCCCcCHHHHHHhhhcccCCCCCCHHHHHHhHHHHheeccch
Confidence 11 1 136999999986432 2 499999999999999999975
No 3
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=100.00 E-value=2.2e-33 Score=259.29 Aligned_cols=275 Identities=82% Similarity=1.297 Sum_probs=189.0
Q ss_pred HHhhcCCCCCCCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 23 VSKLRGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 23 ~~~~~~~~~~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
+.+...++.+.||||+++|++||++++.....+..+.+|+++||++|++|+|+.++|+++||+++++++.+++..|++|+
T Consensus 21 ~~~~~~~~~~~pPgp~~~p~~g~l~~~~~~~~~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~~il~~~~~~~~~r~ 100 (503)
T PLN02394 21 VSKLRGKKLKLPPGPAAVPIFGNWLQVGDDLNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRT 100 (503)
T ss_pred HHHHhcCcCCCCcCCCCCCeeeeHHhcCCCchhHHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHHHHHHhCCccccCCC
Confidence 33334455678999999999999988865545678999999999999999999999999999999999998888899887
Q ss_pred CcchhhhhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhH-HHHHHH
Q 022341 103 RNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLR-RRLQLM 181 (298)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~ 181 (298)
....+..+.+.+.+++++.+|+.|+++||.+..++|+.+.++.+.+.++++++++++.|.+..+. .++.+++ ..+...
T Consensus 101 ~~~~~~~~~g~~~~~l~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~i~~~v~~lv~~l~~~~~~-~~~~v~~~~~~~~~ 179 (503)
T PLN02394 101 RNVVFDIFTGKGQDMVFTVYGDHWRKMRRIMTVPFFTNKVVQQYRYGWEEEADLVVEDVRANPEA-ATEGVVIRRRLQLM 179 (503)
T ss_pred CcchHhHhccCCCceeecCCCHHHHHHHHHHHHHhcChHHHHHhhHHHHHHHHHHHHHHHHhhhc-cCCcEecHHHHHHH
Confidence 65555555566666788889999999999876688998888889899999999999999764321 1223444 345555
Q ss_pred HHHHHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHH----HHHHHHH
Q 022341 182 MYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRL----QLFKDYF 257 (298)
Q Consensus 182 ~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~----~~~~~~~ 257 (298)
+++++++++||.+++..+++.+..+.............+...+.+++|++.+....+.+.+........ ..+.+..
T Consensus 180 ~~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 259 (503)
T PLN02394 180 MYNIMYRMMFDRRFESEDDPLFLKLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICQDVKERRLALFKDYFVDER 259 (503)
T ss_pred HHHHHHHHHhCCCcccccchhHHHHHHHHHHHHHHhcccccchhhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667799999999987544444433333322222222222122335566554322222222211111111 1111111
Q ss_pred ---HHh-----cccCChHHHHHhhcccCCCCHHHHHHHHHHHhhcccCC
Q 022341 258 ---VEE-----RNLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 258 ---i~~-----~~~~d~ld~ll~~~~~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
.+. ...+|++|.|+++.+++.++++++...+.++++||+++
T Consensus 260 ~~~~~~~~~~~~~~~d~l~~ll~~~~~~~l~~~~i~~~~~~~~~AG~dT 308 (503)
T PLN02394 260 KKLMSAKGMDKEGLKCAIDHILEAQKKGEINEDNVLYIVENINVAAIET 308 (503)
T ss_pred HHHhhhccCCcchhhhHHHHHHhccccCCCCHHHHHHHHHHHHHhchhh
Confidence 110 12368999999876666799999999999999999975
No 4
>PLN02687 flavonoid 3'-monooxygenase
Probab=100.00 E-value=1.6e-31 Score=247.51 Aligned_cols=283 Identities=29% Similarity=0.447 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHHHHH-h--hcCCCCCCCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHH
Q 022341 9 TLLALFAAVVVAITVS-K--LRGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPD 85 (298)
Q Consensus 9 ~~~~~~~~~~~~~~~~-~--~~~~~~~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~ 85 (298)
++.+++++++++++++ + .++++.++||||+++|++||++++..+ ++..+.+|+++||++|++++|+.++|+++||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pPgp~~~P~iG~~~~~~~~-~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~ 86 (517)
T PLN02687 8 LLGTVAVSVLVWCLLLRRGGSGKHKRPLPPGPRGWPVLGNLPQLGPK-PHHTMAALAKTYGPLFRLRFGFVDVVVAASAS 86 (517)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCCCCCCccCCCCCccccHHhcCCc-hhHHHHHHHHHhCCeeEEecCCceEEEeCCHH
Confidence 3334444455544443 2 234455789999999999999888644 77889999999999999999999999999999
Q ss_pred HHHHHHHhcCccccCCCCcchhhhhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCc
Q 022341 86 HAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDP 165 (298)
Q Consensus 86 ~i~evl~~~~~~f~~r~~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 165 (298)
+++++|.++...|++|+.......+...+.+++++.+|+.|+++||++.+++|+.+.++.|.+.++++++.+++.|.+..
T Consensus 87 ~~~~il~~~~~~f~~r~~~~~~~~~~~~~~~~l~~~~g~~Wk~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~ 166 (517)
T PLN02687 87 VAAQFLRTHDANFSNRPPNSGAEHMAYNYQDLVFAPYGPRWRALRKICAVHLFSAKALDDFRHVREEEVALLVRELARQH 166 (517)
T ss_pred HHHHHHHhcchhhhcCCCccchhhhccCCceeEeCCCCHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 99999999888999998654444443334456788889999999999865789998899999999999999999997532
Q ss_pred ccccCChhhHHH-HHHHHHHHHHHHHhccccCCCC-chHHHHHHHHHHHHHhhhhccCCcccccccccccc-chhhHHHH
Q 022341 166 EAATNGIVLRRR-LQLMMYNNMYRIMFDRRFESQD-DPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPF-LRGYLKIC 242 (298)
Q Consensus 166 ~~~~~~~~~~~~-~~~~~~~~i~~~~fG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~-~~~~~~~~ 242 (298)
+ ++++++.. +...++++|++++||.++...+ +.....+............. ..+.+++|++... .....+..
T Consensus 167 ~---~~~vd~~~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~P~l~~l~~~~~~~~~ 241 (517)
T PLN02687 167 G---TAPVNLGQLVNVCTTNALGRAMVGRRVFAGDGDEKAREFKEMVVELMQLAGV--FNVGDFVPALRWLDLQGVVGKM 241 (517)
T ss_pred C---CCceeHHHHHHHHHHHHHHHHHhCccccccCCcchHHHHHHHHHHHHHHhcc--CcHHHHhhhHHHhCcccHHHHH
Confidence 1 23456554 4555566799999999874322 11112222222222111111 1123556654311 11101111
Q ss_pred HHHHHHHHHHHHHHHHHhc---------ccCChHHHHHhhccc-------CCCCHHHHHHHHHHHhhcccCC
Q 022341 243 KEVKERRLQLFKDYFVEER---------NLKCAIDHILDAQTK-------GEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 243 ~~~~~~~~~~~~~~~i~~~---------~~~d~ld~ll~~~~~-------~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
.+. .+...++....++++ ...|+++.|++..++ +.+|++++...+.++++||+++
T Consensus 242 ~~~-~~~~~~~~~~~i~~r~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~eT 312 (517)
T PLN02687 242 KRL-HRRFDAMMNGIIEEHKAAGQTGSEEHKDLLSTLLALKREQQADGEGGRITDTEIKALLLNLFTAGTDT 312 (517)
T ss_pred HHH-HHHHHHHHHHHHHHHHHhccccCcccccHHHHHHHhhccccccccccCCCHHHHHHHHHHHhccccCc
Confidence 111 112222222222211 246999999975321 2599999999999999999975
No 5
>PLN03234 cytochrome P450 83B1; Provisional
Probab=100.00 E-value=1.1e-30 Score=241.21 Aligned_cols=275 Identities=24% Similarity=0.368 Sum_probs=183.2
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCcc
Q 022341 18 VVAITVSKLRGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVE 97 (298)
Q Consensus 18 ~~~~~~~~~~~~~~~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~ 97 (298)
++++++.+..+++.+.||||+++|++||++++....++..+.+|+++||++|++|+|+.++|+++||+++++++.++...
T Consensus 14 ~~~~~~~~~~~~~~~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~~~~ 93 (499)
T PLN03234 14 AAFFFLRSTTKKSLRLPPGPKGLPIIGNLHQMEKFNPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDLN 93 (499)
T ss_pred HHHHHHHHhcCCCCCCCcCCCCCCeeccHHhcCCCCccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhCCcc
Confidence 34445555555566789999999999999988543366788999999999999999999999999999999999999889
Q ss_pred ccCCCCcchhhhhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHH
Q 022341 98 FGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRR 177 (298)
Q Consensus 98 f~~r~~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (298)
|+.||.......+...+..+.+..+|+.|+++||.+..++|+++.+..+.+.++++++++++.|.+..+. ++.+++.+
T Consensus 94 f~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~Rr~l~~~~f~~~~l~~~~~~i~~~~~~ll~~l~~~~~~--~~~vd~~~ 171 (499)
T PLN03234 94 FTARPLLKGQQTMSYQGRELGFGQYTAYYREMRKMCMVNLFSPNRVASFRPVREEECQRMMDKIYKAADQ--SGTVDLSE 171 (499)
T ss_pred ccCCCCchhhhhhccCCCccccCCCcHHHHHHHHHHHHHhcCHHHHHHhHHHHHHHHHHHHHHHHHhccC--CCeEEHHH
Confidence 9999864333322222333456677899999999866689999989999999999999999999754321 23466655
Q ss_pred H-HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCcccccccccc--ccchhhHHHHHHHHHHHHHHHH
Q 022341 178 L-QLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILR--PFLRGYLKICKEVKERRLQLFK 254 (298)
Q Consensus 178 ~-~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~--~~~~~~~~~~~~~~~~~~~~~~ 254 (298)
. ...++++|++++||.+++..+++. ..+............ ...+.+.+|++. +.+.+..+...+. .+.+..+.
T Consensus 172 ~~~~~t~dvi~~~~fG~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~~~~~~~ 247 (499)
T PLN03234 172 LLLSFTNCVVCRQAFGKRYNEYGTEM-KRFIDILYETQALLG--TLFFSDLFPYFGFLDNLTGLSARLKKA-FKELDTYL 247 (499)
T ss_pred HHHHHHHHHHHHHHhCCcccccchhH-HHHHHHHHHHHHHcC--CCcHHHHhhHHHHhhhhhhHHHHHHHH-HHHHHHHH
Confidence 4 445566699999999886543222 222221111111111 112234555432 1111111111111 12222333
Q ss_pred HHHHHhc--------ccCChHHHHHhhccc----CCCCHHHHHHHHHHHhhcccCC
Q 022341 255 DYFVEER--------NLKCAIDHILDAQTK----GEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 255 ~~~i~~~--------~~~d~ld~ll~~~~~----~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
...++++ ..+|+++.|++..++ ..+++++|++.+.++++||+++
T Consensus 248 ~~~i~~~~~~~~~~~~~~d~l~~l~~~~~~~~~~~~~~~~~i~~~~~~ll~AG~dT 303 (499)
T PLN03234 248 QELLDETLDPNRPKQETESFIDLLMQIYKDQPFSIKFTHENVKAMILDIVVPGTDT 303 (499)
T ss_pred HHHHHHHHhhcccCCCcccHHHHHHHHhhccCcCCCCCHHHHHHHHHHHHhcchhh
Confidence 3332221 246899999875432 2589999999999999999875
No 6
>PLN02183 ferulate 5-hydroxylase
Probab=100.00 E-value=6.8e-31 Score=243.20 Aligned_cols=259 Identities=29% Similarity=0.459 Sum_probs=171.9
Q ss_pred cCCCCCCCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcch
Q 022341 27 RGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVV 106 (298)
Q Consensus 27 ~~~~~~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~ 106 (298)
..++.++||||+++|++||++++... .+..+.+|+++||++|++++|+.++|+++||++++++|.++...|++|+....
T Consensus 31 ~~~~~~~ppgp~~~Pl~G~l~~~~~~-~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~ 109 (516)
T PLN02183 31 LRRRLPYPPGPKGLPIIGNMLMMDQL-THRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDSVFSNRPANIA 109 (516)
T ss_pred ccCCCCCCcCCCCCCeeccHHhcCCc-chHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhhhhhcCCCcccc
Confidence 33445789999999999999887532 56789999999999999999999999999999999999999889999986544
Q ss_pred hhhhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHHH-HHHHHHH
Q 022341 107 FDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRL-QLMMYNN 185 (298)
Q Consensus 107 ~~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~ 185 (298)
...+.+++.+++++.+|+.|+++||++++++|+.+.++.+.+++ ++++.+++.|.... ++++++.+. ...++++
T Consensus 110 ~~~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~~-~~~~~~~~~l~~~~----~~~v~~~~~~~~~~~~v 184 (516)
T PLN02183 110 ISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWASVR-DEVDSMVRSVSSNI----GKPVNIGELIFTLTRNI 184 (516)
T ss_pred hhccccCCCceEeCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHHHHHHHHHhcC----CCcEeHHHHHHHHHHHH
Confidence 44344333456788899999999998656889998888888865 68999999996421 234565544 4455666
Q ss_pred HHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccc-hhhHHHHHHHHHHHHHHHHHHHH----Hh
Q 022341 186 MYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFL-RGYLKICKEVKERRLQLFKDYFV----EE 260 (298)
Q Consensus 186 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i----~~ 260 (298)
|++++||.+.+...+... .....+...... ....+++|++.... ....+..... .+....+....+ ++
T Consensus 185 i~~~~fG~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~ 257 (516)
T PLN02183 185 TYRAAFGSSSNEGQDEFI----KILQEFSKLFGA--FNVADFIPWLGWIDPQGLNKRLVKA-RKSLDGFIDDIIDDHIQK 257 (516)
T ss_pred HHhHhhcCcccchHHHHH----HHHHHHHHHhCC--ccHHHhcchhHhcccccHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 999999987654222211 111111111111 11234555543110 1111111111 111122221111 11
Q ss_pred ---c--------ccCChHHHHHhhccc-------------CCCCHHHHHHHHHHHhhcccCC
Q 022341 261 ---R--------NLKCAIDHILDAQTK-------------GEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 261 ---~--------~~~d~ld~ll~~~~~-------------~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
. ..+|+++.+++...+ ..++++++++.+.++++||+++
T Consensus 258 ~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 319 (516)
T PLN02183 258 RKNQNADNDSEEAETDMVDDLLAFYSEEAKVNESDDLQNSIKLTRDNIKAIIMDVMFGGTET 319 (516)
T ss_pred hcccccccccccccccHHHHHHHhhhccccccccccccccCCCCHHHHHHHHHHHHHcchhh
Confidence 0 135899999974211 1489999999999999999874
No 7
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.98 E-value=2.3e-30 Score=239.81 Aligned_cols=276 Identities=27% Similarity=0.445 Sum_probs=180.4
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcC
Q 022341 16 AVVVAITVSKLRGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQG 95 (298)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~ 95 (298)
.++++.++++.+.++.+.||||+++|++||++++.. .++..+.+|+++||++|++++|+.++|+++||+++++|+.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~ppgp~~~pl~G~~~~~~~-~~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~~~vl~~~~ 94 (514)
T PLN03112 16 NVLIWRWLNASMRKSLRLPPGPPRWPIVGNLLQLGP-LPHRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLRQD 94 (514)
T ss_pred HHHHHHHccccccCCCCCccCCCCCCeeeeHHhcCC-chHHHHHHHHHHhCCeEEEEecCccEEEECCHHHHHHHHHhCC
Confidence 334444445555566788999999999999988853 3677899999999999999999999999999999999999998
Q ss_pred ccccCCCCcchhh-hhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhh
Q 022341 96 VEFGSRTRNVVFD-IFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVL 174 (298)
Q Consensus 96 ~~f~~r~~~~~~~-~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (298)
..|++|+...... ...+.+ +++++.+|+.|+++||.+.+++|+.+.++.+.+.+.++++.+++.+.+... .+.+++
T Consensus 95 ~~f~~~~~~~~~~~~~~g~~-~~~~~~~g~~wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~lv~~l~~~~~--~~~~vd 171 (514)
T PLN03112 95 DVFASRPRTLAAVHLAYGCG-DVALAPLGPHWKRMRRICMEHLLTTKRLESFAKHRAEEARHLIQDVWEAAQ--TGKPVN 171 (514)
T ss_pred cccccCCCcccceeeccCCC-ceEeCCCCHHHHHHHHHHHHHhcCHHHHHHhhHHHHHHHHHHHHHHHHhhc--cCCeee
Confidence 8999888643221 122323 345678899999999997677899988899999999999999998764321 123466
Q ss_pred HHHHH-HHHHHHHHHHHhccccCCCCc---hHHHHHHHHHHHHHhhhhccCCccccccccccccc-hhhHHHHHHHHHHH
Q 022341 175 RRRLQ-LMMYNNMYRIMFDRRFESQDD---PLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFL-RGYLKICKEVKERR 249 (298)
Q Consensus 175 ~~~~~-~~~~~~i~~~~fG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~-~~~~~~~~~~~~~~ 249 (298)
+.... ..+++++++++||.++....+ .....+......+..... ...+.+++|++.... ....+...+. .+.
T Consensus 172 ~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~ 248 (514)
T PLN03112 172 LREVLGAFSMNNVTRMLLGKQYFGAESAGPKEAMEFMHITHELFRLLG--VIYLGDYLPAWRWLDPYGCEKKMREV-EKR 248 (514)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccccccchHHHHHHHHHHHHHHHHcC--CCcHHHhChHHHhcCcccHHHHHHHH-HHH
Confidence 65544 445566999999998643211 111222222222211111 112235566543111 0111111110 111
Q ss_pred HHHHHHHHHHh-----------cccCChHHHHHhhcc-cC--CCCHHHHHHHHHHHhhcccCC
Q 022341 250 LQLFKDYFVEE-----------RNLKCAIDHILDAQT-KG--EINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 250 ~~~~~~~~i~~-----------~~~~d~ld~ll~~~~-~~--~~t~~~i~~~~~~l~~aG~~~ 298 (298)
+.++....+++ ....|+++.++++.+ ++ .+++++|.+.+.++++||+++
T Consensus 249 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 311 (514)
T PLN03112 249 VDEFHDKIIDEHRRARSGKLPGGKDMDFVDVLLSLPGENGKEHMDDVEIKALMQDMIAAATDT 311 (514)
T ss_pred HHHHHHHHHHHHHHhhcccccCCccchHHHHHHHhhccccccCCCHHHHHHHHHHHhcccccc
Confidence 22222222111 113589999998532 22 489999999999999999975
No 8
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.98 E-value=5e-30 Score=236.49 Aligned_cols=281 Identities=23% Similarity=0.389 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHHhh-cCCCCCCCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHH
Q 022341 11 LALFAAVVVAITVSKL-RGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKE 89 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~-~~~~~~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~e 89 (298)
.+.++.++..++++.. .+++.++||||+++|++||++++.. .++..+.+|+++||++|++|+|+.++|+++||+++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~pPgp~~~Pl~G~l~~~~~-~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~ 87 (504)
T PLN00110 9 AATLLFFITRFFIRSLLPKPSRKLPPGPRGWPLLGALPLLGN-MPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARA 87 (504)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCcccCCCCCeeechhhcCC-chHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHH
Confidence 3344455555566543 3445678999999999999988753 3678899999999999999999999999999999999
Q ss_pred HHHhcCccccCCCCcchhhhhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCccccc
Q 022341 90 VLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAAT 169 (298)
Q Consensus 90 vl~~~~~~f~~r~~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 169 (298)
+|.++...|++|+..........++.+++++.+|+.||++||++.+++|+.+.++.+.+.+.+++..+++.+.+....
T Consensus 88 vl~~~~~~f~~r~~~~~~~~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~i~~~~~~~~~~l~~~~~~-- 165 (504)
T PLN00110 88 FLKTLDINFSNRPPNAGATHLAYGAQDMVFADYGPRWKLLRKLSNLHMLGGKALEDWSQVRTVELGHMLRAMLELSQR-- 165 (504)
T ss_pred HHHhcchhhcCCCCccchhhhccCCCceeeCCCCHHHHHHHHHHHHHhCCHHHHHHhhHHHHHHHHHHHHHHHHhccC--
Confidence 999988899999864433222222334577888999999999986668999989999999999999999998753321
Q ss_pred CChhhHHHHHHHH-HHHHHHHHhccccC-CCCchHHHHHHHHHHHHHhhhhccCCcccccccccccc-chhhHHHHHHHH
Q 022341 170 NGIVLRRRLQLMM-YNNMYRIMFDRRFE-SQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPF-LRGYLKICKEVK 246 (298)
Q Consensus 170 ~~~~~~~~~~~~~-~~~i~~~~fG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~-~~~~~~~~~~~~ 246 (298)
++++++.+....+ +++|++++||.++. ..+++. +.+............. ..+.+++|++... ..+..+...+.
T Consensus 166 g~~~~~~~~~~~~~~~vi~~~~fg~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~p~l~~l~~~~~~~~~~~~- 241 (504)
T PLN00110 166 GEPVVVPEMLTFSMANMIGQVILSRRVFETKGSES-NEFKDMVVELMTTAGY--FNIGDFIPSIAWMDIQGIERGMKHL- 241 (504)
T ss_pred CCcEeHHHHHHHHHHHHHHHHHhCCcccccCchhH-HHHHHHHHHHHHHhcc--ccHHHHcchHhhhCcchHHHHHHHH-
Confidence 2356666555544 55599999999862 222111 1122211111111111 1223566654311 11111111111
Q ss_pred HHHHHHHHHHHHHh--------cccCChHHHHHhhcc--c-CCCCHHHHHHHHHHHhhcccCC
Q 022341 247 ERRLQLFKDYFVEE--------RNLKCAIDHILDAQT--K-GEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 247 ~~~~~~~~~~~i~~--------~~~~d~ld~ll~~~~--~-~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
.+....+....+++ ....|++|.+++..+ + ..++++++.+++.++++||+++
T Consensus 242 ~~~~~~~~~~~i~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~l~~~~i~~~~~~~~~Ag~dT 304 (504)
T PLN00110 242 HKKFDKLLTRMIEEHTASAHERKGNPDFLDVVMANQENSTGEKLTLTNIKALLLNLFTAGTDT 304 (504)
T ss_pred HHHHHHHHHHHHHHHHhhccccccCCChhhHHhhcccccCCCCCCHHHHHHHHHhhhcccccc
Confidence 11122222222211 124689999997532 2 2599999999999999999975
No 9
>PLN00168 Cytochrome P450; Provisional
Probab=99.98 E-value=3.8e-30 Score=238.38 Aligned_cols=263 Identities=19% Similarity=0.297 Sum_probs=171.4
Q ss_pred CCCCCCCCCCCCCccccccccCCC--CcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcc
Q 022341 28 GKRFKLPPGPLPVPVFGNWLQVGD--DLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV 105 (298)
Q Consensus 28 ~~~~~~ppGP~~~PiiGnl~~l~~--~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~ 105 (298)
+++.++||||+++|++||++++.. ..++..+.+|+++||++|++++|+.|+|+++||++++++|.+++..|++||...
T Consensus 31 ~~~~~lpPgp~~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~~~~f~~rp~~~ 110 (519)
T PLN00168 31 KKGRRLPPGPPAVPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVERGAALADRPAVA 110 (519)
T ss_pred CCCCCCCcCCCCCcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcCCccccCCccc
Confidence 344578999999999999987642 225678899999999999999999999999999999999999999999998654
Q ss_pred hhhhhccCCCceE-EecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHHHHHHH-H
Q 022341 106 VFDIFTGKGQDMV-FTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMM-Y 183 (298)
Q Consensus 106 ~~~~~~~~~~~~~-~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~ 183 (298)
... +.+.+.+++ +.++|+.||++||.+.+++|+.+.++.|.+.++++++.+++.|.+..+. +..++..+....+ .
T Consensus 111 ~~~-~~~~~~~~~~~~~~G~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~--~~~v~~~~~~~~~~~ 187 (519)
T PLN00168 111 SSR-LLGESDNTITRSSYGPVWRLLRRNLVAETLHPSRVRLFAPARAWVRRVLVDKLRREAED--AAAPRVVETFQYAMF 187 (519)
T ss_pred chh-hhccCCCceeCCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCcCHHHHHHHHHH
Confidence 333 334332222 2378999999998656799999999999999999999999999764321 1234544444444 4
Q ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCcccccccccccc-chhhHHHHHHHHHHHHHHHHHHHHHhc-
Q 022341 184 NNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPF-LRGYLKICKEVKERRLQLFKDYFVEER- 261 (298)
Q Consensus 184 ~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~- 261 (298)
++|+.++||.+++... .+.+............. ...+.+++|.+... ..+..+..... .++..++....++++
T Consensus 188 ~ii~~~~fG~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~p~l~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 262 (519)
T PLN00168 188 CLLVLMCFGERLDEPA---VRAIAAAQRDWLLYVSK-KMSVFAFFPAVTKHLFRGRLQKALAL-RRRQKELFVPLIDARR 262 (519)
T ss_pred HHHHHHHcCCCcChhh---HHHHHHHHHHHHHHhcC-CCCHHHhCcchhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4599999999875321 12222222111111111 11123566654321 11101111110 011111111111100
Q ss_pred ------------------ccCChHHHHHhhcc--c--CCCCHHHHHHHHHHHhhcccCC
Q 022341 262 ------------------NLKCAIDHILDAQT--K--GEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 262 ------------------~~~d~ld~ll~~~~--~--~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
...|++|.|++... + ..+|+++|++++.++++||+++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~AG~dT 321 (519)
T PLN00168 263 EYKNHLGQGGEPPKKETTFEHSYVDTLLDIRLPEDGDRALTDDEIVNLCSEFLNAGTDT 321 (519)
T ss_pred HHhhhccccCccccccccccccHHHHHHhhhccccccCCCCHHHHHHHHHHHHHhcchH
Confidence 03589999997531 2 2599999999999999999875
No 10
>PLN02655 ent-kaurene oxidase
Probab=99.97 E-value=3.6e-30 Score=235.58 Aligned_cols=262 Identities=16% Similarity=0.236 Sum_probs=175.5
Q ss_pred CCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhhhhccC
Q 022341 34 PPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGK 113 (298)
Q Consensus 34 ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~~~~~~ 113 (298)
||||+++|++||++++..+.++..+.+|+++||++|++++|++++|+|+||++++++|.++...|++|+.......+.++
T Consensus 1 ppgp~~lP~iG~l~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~~~~~~~~~~ 80 (466)
T PLN02655 1 VPAVPGLPVIGNLLQLKEKKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLSKALTVLTRD 80 (466)
T ss_pred CcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChhhHHHHHhcC
Confidence 68999999999999986555788999999999999999999999999999999999999999999999865444445554
Q ss_pred CCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHHH-HHHHHHHHHHHHhc
Q 022341 114 GQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRL-QLMMYNNMYRIMFD 192 (298)
Q Consensus 114 ~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~fG 192 (298)
+..++..++|+.|+++||.+.+++++....+.+.+.++++++.+++.+.+..+...++++++... ...+++++++++||
T Consensus 81 ~~~~~~~~~g~~wr~~Rr~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG 160 (466)
T PLN02655 81 KSMVATSDYGDFHKMVKRYVMNNLLGANAQKRFRDTRDMLIENMLSGLHALVKDDPHSPVNFRDVFENELFGLSLIQALG 160 (466)
T ss_pred CCceeeCCCcHHHHHHHHHHHHHhcCchHHHHhHHHHHHHHHHHHHHHHhhccccCCCceeHHHHHHHHHHHHHHHHHhc
Confidence 43444446799999999988788898888888888889999999998865432212345676554 44556669999999
Q ss_pred cccCCCCchH-HHHH---HHHHHHHHhhhhcc-CCccccccccccccc-hhhHHHHHHHHHHHHHHHHHHHHH----h--
Q 022341 193 RRFESQDDPL-FNRL---KALNGERSRLAQSF-EYNYGDFIPILRPFL-RGYLKICKEVKERRLQLFKDYFVE----E-- 260 (298)
Q Consensus 193 ~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~-~~~~~d~~p~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~----~-- 260 (298)
.++++..++. .+.+ ......+....... ...+.+++|+++... +.+.+..... ......+....++ +
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~ 239 (466)
T PLN02655 161 EDVESVYVEELGTEISKEEIFDVLVHDMMMCAIEVDWRDFFPYLSWIPNKSFETRVQTT-EFRRTAVMKALIKQQKKRIA 239 (466)
T ss_pred cccccccccccccchhhHHHHHHHHHHHHHHhCCcchhhhhhhhhhcCchhHHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Confidence 9876532111 1100 11111111111111 122345677554111 1111111111 1111122222221 1
Q ss_pred --cccCChHHHHHhhcccCCCCHHHHHHHHHHHhhcccCC
Q 022341 261 --RNLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 261 --~~~~d~ld~ll~~~~~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
..+.|++|.+++.. ..+|++++.+.+.++++||+++
T Consensus 240 ~~~~~~d~l~~ll~~~--~~ls~~~i~~~~~~~~~ag~dt 277 (466)
T PLN02655 240 RGEERDCYLDFLLSEA--THLTDEQLMMLVWEPIIEAADT 277 (466)
T ss_pred CCCCcccHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHH
Confidence 12468999999764 3599999999999999999874
No 11
>PLN03018 homomethionine N-hydroxylase
Probab=99.97 E-value=2.5e-29 Score=232.80 Aligned_cols=266 Identities=16% Similarity=0.248 Sum_probs=170.6
Q ss_pred CCCCCCCCCCCccccccccCCCCcch-HHHHHHHHHh-CCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchh
Q 022341 30 RFKLPPGPLPVPVFGNWLQVGDDLNH-RNLSDLAKKY-GDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVF 107 (298)
Q Consensus 30 ~~~~ppGP~~~PiiGnl~~l~~~~~~-~~~~~~~~~y-G~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~ 107 (298)
+.++||||+++|++||++++..+.++ ..+.++.++| |+||++|+|++++|+|+||++++++|.+++..|++||.....
T Consensus 38 ~~~~PPgp~~~P~iGnl~~l~~~~~~~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~~rp~~~~~ 117 (534)
T PLN03018 38 SRQLPPGPPGWPILGNLPELIMTRPRSKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLADRPQLSIM 117 (534)
T ss_pred CCCCCcCCCCCCeeccHHHhccCCCcchhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhcCCCCchhh
Confidence 34589999999999999987533232 3455666666 799999999999999999999999999999899999865544
Q ss_pred hhhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHHHHHHHH
Q 022341 108 DIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQLMMYNNM 186 (298)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~i 186 (298)
..+.+++.+++++++|+.||++||++++.+++.+..+.+..+++.+++++++.|.+..+. ++++++. .+...++++|
T Consensus 118 ~~l~~~~~~i~~~~~G~~Wk~~Rk~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~vd~~~~~~~~t~~vi 195 (534)
T PLN03018 118 ETIGDNYKSMGTSPYGEQFMKMKKVITTEIMSVKTLNMLEAARTIEADNLIAYIHSMYQR--SETVDVRELSRVYGYAVT 195 (534)
T ss_pred hhhccCCCceEecCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCceeHHHHHHHHHHHHH
Confidence 444333345677777999999999987666777777777777778899999999753221 2245654 4555666779
Q ss_pred HHHHhccccCCCC------chHHHHHHHHHHHHHhhhhcc-CCccccccc-ccccc-chhhHHHHHHHHHHHHHHHHHHH
Q 022341 187 YRIMFDRRFESQD------DPLFNRLKALNGERSRLAQSF-EYNYGDFIP-ILRPF-LRGYLKICKEVKERRLQLFKDYF 257 (298)
Q Consensus 187 ~~~~fG~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~p-~l~~~-~~~~~~~~~~~~~~~~~~~~~~~ 257 (298)
++++||.++...+ +.....+....+.+......+ ...+.+++| +++.+ ..+..+..... .+...++...+
T Consensus 196 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~ 274 (534)
T PLN03018 196 MRMLFGRRHVTKENVFSDDGRLGKAEKHHLEVIFNTLNCLPGFSPVDYVERWLRGWNIDGQEERAKVN-VNLVRSYNNPI 274 (534)
T ss_pred HHHHhCCccccccccccccccchhHHHHHHHHHHHHHHHhCCCcHHHHhhhhhhhhcccchHHHHHHH-HHHHHHHHHHH
Confidence 9999999874311 111111221112111221111 112235555 44422 11111111111 11122222222
Q ss_pred HHh---------c--ccCChHHHHHhhcc-cC--CCCHHHHHHHHHHHhhcccCC
Q 022341 258 VEE---------R--NLKCAIDHILDAQT-KG--EINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 258 i~~---------~--~~~d~ld~ll~~~~-~~--~~t~~~i~~~~~~l~~aG~~~ 298 (298)
+++ . ...|++|.|++..+ ++ .+|+++|...+.++++||+++
T Consensus 275 i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~ls~~~i~~~~~~~~~aG~dT 329 (534)
T PLN03018 275 IDERVELWREKGGKAAVEDWLDTFITLKDQNGKYLVTPDEIKAQCVEFCIAAIDN 329 (534)
T ss_pred HHHHHHHhhhccCCCCcccHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHhhhH
Confidence 211 1 14699999997643 23 389999999999999999874
No 12
>PLN02966 cytochrome P450 83A1
Probab=99.97 E-value=4.3e-29 Score=230.52 Aligned_cols=270 Identities=27% Similarity=0.441 Sum_probs=177.0
Q ss_pred HhhcCCCCCCCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCC
Q 022341 24 SKLRGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTR 103 (298)
Q Consensus 24 ~~~~~~~~~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~ 103 (298)
....++..++||||+++|++||++++....++..+.+|+++||++|++|+|+.++|+++||+++++||.+++..|++++.
T Consensus 21 ~~~~~~~~~~ppgp~~~p~~G~l~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~~~~~~~~~ 100 (502)
T PLN02966 21 QKPKTKRYKLPPGPSPLPVIGNLLQLQKLNPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQDVNFADRPP 100 (502)
T ss_pred hccccCCCCCCcCCCCCCeeccHHhcCCCChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCcccccCCCC
Confidence 33344455789999999999999988544477889999999999999999999999999999999999988888887764
Q ss_pred cchhhhhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHHHHH-HH
Q 022341 104 NVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQL-MM 182 (298)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~ 182 (298)
.........+..++.+..+|+.|+++||.+.+++|+.+.++.+.+.++++++++++.|.+... .++++++.+... .+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~--~~~~vdl~~~~~~~t 178 (502)
T PLN02966 101 HRGHEFISYGRRDMALNHYTPYYREIRKMGMNHLFSPTRVATFKHVREEEARRMMDKINKAAD--KSEVVDISELMLTFT 178 (502)
T ss_pred CccceeeccCcceeeeCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCceeHHHHHHHHH
Confidence 322222111222345667799999999986678999999999999999999999999975432 123466655544 45
Q ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCcccccccccc--ccchhhHH---HHHHHHHHHHHHHHHHH
Q 022341 183 YNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILR--PFLRGYLK---ICKEVKERRLQLFKDYF 257 (298)
Q Consensus 183 ~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~--~~~~~~~~---~~~~~~~~~~~~~~~~~ 257 (298)
+++|++++||.+++..++.... +............ ...+.+++|++. +.+.++.+ .+.+...+.......+.
T Consensus 179 ~dvi~~~~fG~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 255 (502)
T PLN02966 179 NSVVCRQAFGKKYNEDGEEMKR-FIKILYGTQSVLG--KIFFSDFFPYCGFLDDLSGLTAYMKECFERQDTYIQEVVNET 255 (502)
T ss_pred HHHHHHHHhCCccCccchHHHH-HHHHHHHHHHHhC--cccHHHhhchhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5669999999988654332222 2221111111111 111234555432 11111111 11111111122222222
Q ss_pred HHhc----ccCChHHHHHhhccc----CCCCHHHHHHHHHHHhhcccCC
Q 022341 258 VEER----NLKCAIDHILDAQTK----GEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 258 i~~~----~~~d~ld~ll~~~~~----~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
++++ +..|++|.|++..++ ..++++++.+++.++++||+++
T Consensus 256 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~eT 304 (502)
T PLN02966 256 LDPKRVKPETESMIDLLMEIYKEQPFASEFTVDNVKAVILDIVVAGTDT 304 (502)
T ss_pred HhccccccccccHHHHHHHHHhccCcCCCCCHHHHHHHHHHHHhccccc
Confidence 2221 246899999975322 2589999999999999999985
No 13
>PTZ00404 cytochrome P450; Provisional
Probab=99.96 E-value=5.7e-28 Score=222.19 Aligned_cols=259 Identities=20% Similarity=0.295 Sum_probs=168.5
Q ss_pred CCCCCCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhh
Q 022341 29 KRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFD 108 (298)
Q Consensus 29 ~~~~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~ 108 (298)
.+.+.+|||+++|++||++++.. .++..+.+|+++||++|++++|+.++|+++||+++++++.++...|+.|+......
T Consensus 26 ~~~~~~pgp~~~p~~G~~~~~~~-~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~~ 104 (482)
T PTZ00404 26 IHKNELKGPIPIPILGNLHQLGN-LPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNFDNFSDRPKIPSIK 104 (482)
T ss_pred ccCCCCCCCCCCCeeccHhhhcc-cHHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHHhcchhhcCCCCcceee
Confidence 34567899999999999988865 37888999999999999999999999999999999999998877888887544322
Q ss_pred h-hccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHHH-HHHHHHHH
Q 022341 109 I-FTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRL-QLMMYNNM 186 (298)
Q Consensus 109 ~-~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i 186 (298)
. ..++| +++.+|+.|+++||++ ++.|+.+.++.+.+.+.++++.+++.|.+..+. ++.+++... ...++++|
T Consensus 105 ~~~~~~~---l~~~~g~~w~~~Rk~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~--~~~vd~~~~~~~~~~dvi 178 (482)
T PTZ00404 105 HGTFYHG---IVTSSGEYWKRNREIV-GKAMRKTNLKHIYDLLDDQVDVLIESMKKIESS--GETFEPRYYLTKFTMSAM 178 (482)
T ss_pred eeccCCc---eeccChHHHHHHHHHH-HHHHhhhccccHHHHHHHHHHHHHHHHHHHHhc--CCccCHHHHHHHHHHHHH
Confidence 1 12333 5677899999999987 588888888889999999999999999753221 234666544 44556669
Q ss_pred HHHHhccccCCCCc---hH-HHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHh--
Q 022341 187 YRIMFDRRFESQDD---PL-FNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEE-- 260 (298)
Q Consensus 187 ~~~~fG~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-- 260 (298)
++++||.+++..++ +. ........+.+... . .....++++++.+.+..+.+...+. .+...++....+++
T Consensus 179 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 254 (482)
T PTZ00404 179 FKYIFNEDISFDEDIHNGKLAELMGPMEQVFKDL-G--SGSLFDVIEITQPLYYQYLEHTDKN-FKKIKKFIKEKYHEHL 254 (482)
T ss_pred HHHHhccccccccccchhHHHHHHHHHHHHHHHh-C--CCchhhhhhHhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 99999998764322 11 11122211111111 1 1112234444332211111111111 12222333222221
Q ss_pred -----cccCChHHHHHhhccc-CCCCHHHHHHHHHHHhhcccCC
Q 022341 261 -----RNLKCAIDHILDAQTK-GEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 261 -----~~~~d~ld~ll~~~~~-~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
..+.|++|.|+++..+ ...+.++|.+.+.++++||+++
T Consensus 255 ~~~~~~~~~dll~~ll~~~~~~~~~~~~~i~~~~~~~~~AG~dT 298 (482)
T PTZ00404 255 KTIDPEVPRDLLDLLIKEYGTNTDDDILSILATILDFFLAGVDT 298 (482)
T ss_pred HccCCCCcccHHHHHHHHhccCCcccHHHHHHHHHHHHHhccch
Confidence 1246899999986422 1122234889999999999875
No 14
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=2.5e-28 Score=218.75 Aligned_cols=279 Identities=20% Similarity=0.210 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHHhh--cCCCCCCCCCCCCCccccccccCCCCc-chHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHH
Q 022341 12 ALFAAVVVAITVSKL--RGKRFKLPPGPLPVPVFGNWLQVGDDL-NHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAK 88 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~--~~~~~~~ppGP~~~PiiGnl~~l~~~~-~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~ 88 (298)
.++++.++|+++++. .++++.+ |||+|+|++||+..+.... ......+.+.+||++++++.|.+|.++|+||++||
T Consensus 10 ~~~l~~l~y~~~~~~~~yw~rrGi-~~~~p~p~~Gn~~~~~~~~~~~~~~~~~~~~~~~~~G~y~~~~p~l~v~D~elik 88 (499)
T KOG0158|consen 10 LILLLVLLYLWLRWTYSYWRRRGI-PGPKPLPFLGNLPGMLKRERPGDLLLDIYTKYRPVVGIYEGRQPALLVSDPELIK 88 (499)
T ss_pred HHHHHHHHHHHHHhhhhhhccCCC-CCCCCCCcEecHHHHHhccCcHHHHHHHHhcCCCEEEEEecCCcceEecCHHHHH
Confidence 333334445444332 3333344 8999999999998874432 23333333444499999999999999999999999
Q ss_pred HHHHhcCccccCCCCcchhhhhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccc
Q 022341 89 EVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAA 168 (298)
Q Consensus 89 evl~~~~~~f~~r~~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 168 (298)
+||+++.++|++|......+.-..-+...++...|++||++|..+ +|.|+++.++.+.+.+++.++++++.+.+.....
T Consensus 89 ~I~ik~F~~F~~r~~~~~~d~~~~l~~~~Lf~~~g~~WK~lR~~l-sP~Fts~kmk~m~~t~~~~~~~l~~~l~~~~~~~ 167 (499)
T KOG0158|consen 89 EILIKDFDNFYNRKRPIYGDPEDPLSALNLFFLRGERWKRLRTKL-SPTFTSGKLKKMFPTMEEVGDELVRHLRRKSEGG 167 (499)
T ss_pred HHHHHhCccCcCCCCCCcCCCCCcccccCchhccCchHHHHHHhh-ccccchhhHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999652222221100111337888999999999987 5888887777777889999999999998754321
Q ss_pred cCChhhHHHH-HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCC--ccccccccccccchh--hHHHHH
Q 022341 169 TNGIVLRRRL-QLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEY--NYGDFIPILRPFLRG--YLKICK 243 (298)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~p~l~~~~~~--~~~~~~ 243 (298)
..++..++ ..+++++|.+++||.+.++..++..................+.. .....+|.+...++. +.....
T Consensus 168 --~~~~~~dl~~~yT~DVI~~~AfG~~~~s~~d~~~~F~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~l~~~~~~~~~~ 245 (499)
T KOG0158|consen 168 --QEGEIKDLCARYTTDVIGSCAFGLDANSLRDPKAEFRRMGRRAFFLSRGLFPLKFMLIFLFPKLALPLRVKLFPEDVT 245 (499)
T ss_pred --CCccHHHHHHHHHHHHHhHhhcccchhhhcCchHHHHHhhHHHHHHhhccchHhHhHHHHhHHHHHhhhcccChHHHH
Confidence 22344443 34556669999999998877654322211111111110111110 011223333211111 111111
Q ss_pred HHHHHHHHHHHHHHHHhc-----ccCChHHHHHhhccc--------CCCCHHHHHHHHHHHhhcccCC
Q 022341 244 EVKERRLQLFKDYFVEER-----NLKCAIDHILDAQTK--------GEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 244 ~~~~~~~~~~~~~~i~~~-----~~~d~ld~ll~~~~~--------~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
......+...++.| .++||+|.|++.+.+ +.+|.++|+..|..+++||.+|
T Consensus 246 ----~~~~~~v~~~v~~R~~~~~~r~Dfi~lll~~~~~~~~~~~~~~~lt~dei~aQafvFl~AGfeT 309 (499)
T KOG0158|consen 246 ----DFFRKLVNSRVEQREKENIERNDFIDLLLDARASDFAKSKSHKALTDDEIAAQAFVFLLAGFET 309 (499)
T ss_pred ----HHHHHHHHHHHHHHHhcCCCCchHHHHHHHhhcccccccccccccCHHHHHHHHHHHHHhhhHh
Confidence 11111122222222 378999999987532 1499999999999999999875
No 15
>PLN02290 cytokinin trans-hydroxylase
Probab=99.96 E-value=5.1e-28 Score=224.27 Aligned_cols=253 Identities=18% Similarity=0.249 Sum_probs=162.0
Q ss_pred CCCCCCCCCccccccccCCC------------------CcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHh
Q 022341 32 KLPPGPLPVPVFGNWLQVGD------------------DLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHT 93 (298)
Q Consensus 32 ~~ppGP~~~PiiGnl~~l~~------------------~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~ 93 (298)
.-||||+++|++||++++.. ......+.+|+++||++|++|+|+.++|+++||++++++|.+
T Consensus 42 ~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~v~~il~~ 121 (516)
T PLN02290 42 QGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGKRFIYWNGTEPRLCLTETELIKELLTK 121 (516)
T ss_pred cCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCCeEEEccCCccEEEECCHHHHHHHHhc
Confidence 35799999999999988742 112235789999999999999999999999999999999988
Q ss_pred cCccccCCCCcch--hhhhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCC
Q 022341 94 QGVEFGSRTRNVV--FDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNG 171 (298)
Q Consensus 94 ~~~~f~~r~~~~~--~~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 171 (298)
+ ..+++|+.... ...+.|++ ++.++|+.||++||++ .+.|+.+.++.+.+.+.++++.+++.|.+..+. ++.
T Consensus 122 ~-~~~~~r~~~~~~~~~~~~g~~---l~~~~g~~Wk~~Rk~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~-~~~ 195 (516)
T PLN02290 122 Y-NTVTGKSWLQQQGTKHFIGRG---LLMANGADWYHQRHIA-APAFMGDRLKGYAGHMVECTKQMLQSLQKAVES-GQT 195 (516)
T ss_pred C-CCCCCCcchhhhHHHHHhcCC---ccccCchHHHHHHhhc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCc
Confidence 7 45677764321 22234433 5667899999999987 588898888999999999999999999754221 122
Q ss_pred hhhHHH-HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHH
Q 022341 172 IVLRRR-LQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRL 250 (298)
Q Consensus 172 ~~~~~~-~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~ 250 (298)
++++.+ +...++++|++++||.+++.. +...+.+..+......... ...+|++..+..+..+..... .+..
T Consensus 196 ~vd~~~~~~~~~~~vi~~~~fG~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~p~~~~~p~~~~~~~~~~-~~~~ 267 (516)
T PLN02290 196 EVEIGEYMTRLTADIISRTEFDSSYEKG-KQIFHLLTVLQRLCAQATR------HLCFPGSRFFPSKYNREIKSL-KGEV 267 (516)
T ss_pred eEEhHHHHHHHHHHHHHHHHcCCccccc-hHHHHHHHHHHHHHHHhhh------hhcCchhhhCCChhHHHHHHH-HHHH
Confidence 456554 445556669999999987542 2222222222211111110 112332210001111111111 1112
Q ss_pred HHHHHHHHHhc-----------ccCChHHHHHhhcc---c-C-CCCHHHHHHHHHHHhhcccCC
Q 022341 251 QLFKDYFVEER-----------NLKCAIDHILDAQT---K-G-EINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 251 ~~~~~~~i~~~-----------~~~d~ld~ll~~~~---~-~-~~t~~~i~~~~~~l~~aG~~~ 298 (298)
..+..+.++++ ..+|++|.++++.+ + + .++++++.+.+.++++||+++
T Consensus 268 ~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 331 (516)
T PLN02290 268 ERLLMEIIQSRRDCVEIGRSSSYGDDLLGMLLNEMEKKRSNGFNLNLQLIMDECKTFFFAGHET 331 (516)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCCCHHHHHHHhccccCCCCCCCCHHHHHHHHHHHHhhhHHH
Confidence 22222222111 14699999997532 1 1 489999999999999999864
No 16
>PLN02500 cytochrome P450 90B1
Probab=99.96 E-value=1e-26 Score=214.25 Aligned_cols=249 Identities=16% Similarity=0.203 Sum_probs=156.6
Q ss_pred cCCCCCCCCCCCCCccccccccCC-C---CcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 27 RGKRFKLPPGPLPVPVFGNWLQVG-D---DLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 27 ~~~~~~~ppGP~~~PiiGnl~~l~-~---~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
++++.++||||+++|++||++.+. . ...+..+.+|+++||++|++++|++++|+++||++++++|.+++..|+++.
T Consensus 33 ~~~~~~~PPgp~~~PiiGn~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~~~f~~~~ 112 (490)
T PLN02500 33 KQKRFNLPPGNMGWPFLGETIGYLKPYSATSIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEGRLFECSY 112 (490)
T ss_pred ccCCCCCCCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCCCeEEeeC
Confidence 345567899999999999986542 1 224567899999999999999999999999999999999999888887653
Q ss_pred CcchhhhhccCCCceEEecCChhHHHHhhhhcccccchHHHHh-hHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHH
Q 022341 103 RNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQ-QRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQL 180 (298)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~ 180 (298)
... ...+.++ .+ ++..+|+.||++||+++ +.|+...++. +.+.+++.+..+++.|.+. +.+|+. .+..
T Consensus 113 ~~~-~~~~~g~-~~-~~~~~g~~wr~~Rk~~~-~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~------~~vd~~~~~~~ 182 (490)
T PLN02500 113 PRS-IGGILGK-WS-MLVLVGDMHRDMRSISL-NFLSHARLRTHLLKEVERHTLLVLDSWKEN------STFSAQDEAKK 182 (490)
T ss_pred chH-HHHHhCc-cc-ccccCCHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHHHhCCC------CCEEehHHHHH
Confidence 222 2233442 12 45568999999999875 7777776665 4567777778888877532 134443 4555
Q ss_pred HHHHHHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHH-
Q 022341 181 MMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVE- 259 (298)
Q Consensus 181 ~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~- 259 (298)
.++++|++++||.+.+..+ ...+... +........ .....+|... .+...+..+. ..+...+..++..+
T Consensus 183 ~~~~vi~~~~fg~~~~~~~---~~~~~~~---~~~~~~~~~-~~~~~~p~~~--~~~~~~~~~~-~~~~~~~~i~~~~~~ 252 (490)
T PLN02500 183 FTFNLMAKHIMSMDPGEEE---TEQLKKE---YVTFMKGVV-SAPLNFPGTA--YRKALKSRAT-ILKFIERKMEERIEK 252 (490)
T ss_pred HHHHHHHHHHhCCCCCchH---HHHHHHH---HHHHHhhhh-cchhcCCCcc--cHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 6667799999998754321 1111111 111111100 0112244322 1111111111 11111111111111
Q ss_pred ---hc---ccCChHHHHHhhcccCCCCHHHHHHHHHHHhhcccCC
Q 022341 260 ---ER---NLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 260 ---~~---~~~d~ld~ll~~~~~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
.. ...|++|.+++. ..+|++++++.+.++++||+++
T Consensus 253 ~~~~~~~~~~~d~l~~ll~~---~~ls~~~i~~~~~~ll~AG~dT 294 (490)
T PLN02500 253 LKEEDESVEEDDLLGWVLKH---SNLSTEQILDLILSLLFAGHET 294 (490)
T ss_pred hhcccCCCCcchHHHHHHhc---cCCCHHHHHHHHHHHHHhhhhH
Confidence 11 246899999974 2489999999999999999874
No 17
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.95 E-value=7.2e-26 Score=207.86 Aligned_cols=255 Identities=18% Similarity=0.297 Sum_probs=164.4
Q ss_pred CCCCCCCCCCCccccccccCCCC--cchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcc-h
Q 022341 30 RFKLPPGPLPVPVFGNWLQVGDD--LNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV-V 106 (298)
Q Consensus 30 ~~~~ppGP~~~PiiGnl~~l~~~--~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~-~ 106 (298)
....||||+++|++||+.++... .....+.++..+||++|+.|+|+.++|+++||+.++++|.++...+..-+..+ .
T Consensus 33 ~~~~~~gp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~~~ 112 (497)
T KOG0157|consen 33 KKKLPPGPPGWPLIGNLLEFLKPLEEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYPES 112 (497)
T ss_pred HhccCCCCCCCCcccchHHhhcchhHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHHHH
Confidence 34578999999999999987433 34567889999999999999999999999999999999965555544444433 5
Q ss_pred hhhhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHHH-HHHHHHH
Q 022341 107 FDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRL-QLMMYNN 185 (298)
Q Consensus 107 ~~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~ 185 (298)
...+.|+| ++.++|+.|+++||++ .++|+.+.++++...+.+++..++..+..... ++. +|+.+. .+.++++
T Consensus 113 ~~~~lG~g---ll~~~g~~W~~~Rk~~-~~~f~~~~L~~~~~~~~~~~~~~~~~~~~~~~--~~~-vd~~~~~~~~tld~ 185 (497)
T KOG0157|consen 113 LKPWLGDG---LLFSDGEKWHKHRKLL-TPAFHFEILKSFVPVFIESSLILLLLLELAAS--GEE-VDLQDLLKRLTLDI 185 (497)
T ss_pred HHHHhcCc---cccCCchHHHHHHhhc-cHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCe-EcHHHHHHHHHHHH
Confidence 56777765 5566699999999986 59999999998988888888888887765322 122 676654 5556666
Q ss_pred HHHHHhcccc-CCCCchHHHHHHHHHHHHHhhhhccCCc-cccccccccccchhhHHHHHHHHHHHHHHHHHHHHHh---
Q 022341 186 MYRIMFDRRF-ESQDDPLFNRLKALNGERSRLAQSFEYN-YGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEE--- 260 (298)
Q Consensus 186 i~~~~fG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--- 260 (298)
||+++||... +.+..+.....++..+....+..++..+ ..++++.+. ..++..+.. +.++.+.+.+|++
T Consensus 186 i~~~~~G~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~a~-----~~~~~~~~~iI~~rr~ 259 (497)
T KOG0157|consen 186 ICKTAMGPESLDAEGPELFEYVQAFDDLTELISKRINLPLGTKFLYGLK-SERKLKKAR-----KILHDFLEKIIRERRE 259 (497)
T ss_pred HHHHhcCCccccccCCcccHHHHHHHHHHHHHHHHHcCchhhhHHhhcc-hHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 9999999322 2222222233333332111122222112 223333332 111111111 1222222222211
Q ss_pred ----------cccCChHHHHHhhcccCCCCHHHHHHHHHHHhhcccCC
Q 022341 261 ----------RNLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 261 ----------~~~~d~ld~ll~~~~~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
....|++|.+.... +..+|+++|++++.++++||.+|
T Consensus 260 ~~~~~~~~~~~~~~d~L~~~~~~~-~~~l~~~~i~d~v~tf~faG~DT 306 (497)
T KOG0157|consen 260 ELEKEGSGEEKKRLDFLDTLLLEE-DKPLTDEDIRDEVDTFMFAGHDT 306 (497)
T ss_pred HHHhcCCcccchhhhHHHHHHHhc-cCCCCHHHHHHHHHHheeeccch
Confidence 12467888633322 26799999999999999999875
No 18
>PLN02774 brassinosteroid-6-oxidase
Probab=99.94 E-value=6e-26 Score=207.65 Aligned_cols=244 Identities=12% Similarity=0.159 Sum_probs=158.5
Q ss_pred CCCCCCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhh
Q 022341 29 KRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFD 108 (298)
Q Consensus 29 ~~~~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~ 108 (298)
++.++||||+++|++||++.+..+ ++..+.+++++||++|++|+|+.++++++||+++++++.++...|..+......
T Consensus 28 ~r~~~ppgp~~~P~~G~~~~~~~~-~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~- 105 (463)
T PLN02774 28 SKKGLPPGTMGWPLFGETTEFLKQ-GPDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEGKGLVPGYPQSML- 105 (463)
T ss_pred CCCCCCCCCCCCCchhhHHHHHHh-hHHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCCCeEEecCCHHHH-
Confidence 334689999999999999877443 556789999999999999999999999999999999998877776443222222
Q ss_pred hhccCCCceEEecCChhHHHHhhhhcccccchHHHHh-hHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHHHHHHHH
Q 022341 109 IFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQ-QRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQLMMYNNM 186 (298)
Q Consensus 109 ~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~i 186 (298)
.+.|++ .+++.+|+.|+++||++ .+.|+++..+. +.+.+++.++++++.|... +++++. .+...+++.+
T Consensus 106 ~~lg~~--~~~~~~g~~w~~~R~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~~ 176 (463)
T PLN02774 106 DILGTC--NIAAVHGSTHRYMRGSL-LSLISPTMIRDHLLPKIDEFMRSHLSGWDGL------KTIDIQEKTKEMALLSA 176 (463)
T ss_pred HHhCcc--chhhcCCHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHhhCCC------CCEEeeHHHHHHHHHHH
Confidence 334432 35566899999999987 47888887765 6788888888888887532 123443 4444556669
Q ss_pred HHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc-----
Q 022341 187 YRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER----- 261 (298)
Q Consensus 187 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----- 261 (298)
++++||.+.+.. ...+. ..+...... ...+..++|... .+...+. .++..++..+.++++
T Consensus 177 ~~~~~g~~~~~~----~~~~~---~~~~~~~~~-~~~~~~~lp~~~--~~~~~~~-----~~~~~~~~~~~i~~r~~~~~ 241 (463)
T PLN02774 177 LKQIAGTLSKPI----SEEFK---TEFFKLVLG-TLSLPIDLPGTN--YRSGVQA-----RKNIVRMLRQLIQERRASGE 241 (463)
T ss_pred HHHHcCCCChHH----HHHHH---HHHHHHhcc-cccCCcCCCChh--hhHHHHH-----HHHHHHHHHHHHHHHHhcCC
Confidence 999999754321 11111 111112111 111112334221 1111111 112223333333222
Q ss_pred ccCChHHHHHhhcccC-CCCHHHHHHHHHHHhhcccCC
Q 022341 262 NLKCAIDHILDAQTKG-EINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 262 ~~~d~ld~ll~~~~~~-~~t~~~i~~~~~~l~~aG~~~ 298 (298)
.++|+++.+++...++ .+|+++|...+.++++||+++
T Consensus 242 ~~~d~l~~ll~~~~~~~~~s~~ei~~~~~~ll~Ag~dT 279 (463)
T PLN02774 242 THTDMLGYLMRKEGNRYKLTDEEIIDQIITILYSGYET 279 (463)
T ss_pred CcccHHHHHHhCccCCCCCCHHHHHHHHHHHHHhcchh
Confidence 2579999999754333 589999999999999999874
No 19
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.94 E-value=5.6e-27 Score=213.19 Aligned_cols=258 Identities=28% Similarity=0.474 Sum_probs=172.9
Q ss_pred CCCCCCCccccccccCCC-CcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhhh--h
Q 022341 34 PPGPLPVPVFGNWLQVGD-DLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDI--F 110 (298)
Q Consensus 34 ppGP~~~PiiGnl~~l~~-~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~~--~ 110 (298)
||||+++|++||++++.. ..++..+.+|+++||+||++++|+.++|+|+||+++++|+.++...|+.++....... .
T Consensus 1 Ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~~~~~~~~~~ 80 (463)
T PF00067_consen 1 PPGPPPLPILGNLLQFRRKGNPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPRPPWFEIFRG 80 (463)
T ss_dssp SSCSSSBTTTBTHHHHHTTHHHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHCHHHHHHHHH
T ss_pred CcCCCCcCceeEHHHhcCCCcHHHHHHHHHHHhCCEEEEeEecccccccccchhhccccccccccccccccccccccccc
Confidence 799999999999999864 4467789999999999999999999999999999999999999888887754333322 1
Q ss_pred ccCCCceEEecCChhHHHHhhhhcccccchH-HHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHH-HHHHHHHHHHH
Q 022341 111 TGKGQDMVFTVYGEHWRKMRRIMTVPFFTNK-VVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRR-LQLMMYNNMYR 188 (298)
Q Consensus 111 ~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~i~~ 188 (298)
...+.+ ++..+|+.|+++|+.+. +.|+.+ .. .+.+.++++++.+++.|.+..+.. +.+++.. +...+++++++
T Consensus 81 ~~~~~~-l~~~~~~~~~~~R~~~~-~~~~~~~~~-~~~~~i~~~~~~l~~~l~~~~~~~--~~vd~~~~~~~~~~d~i~~ 155 (463)
T PF00067_consen 81 PFGGKG-LFFSDGERWRRQRRLLA-PAFSSKKIL-KLEPLIDEEAEELIDQLRKKAGSS--GPVDLFDWLRRFALDVIGR 155 (463)
T ss_dssp HHTTTS-STTSSHHHHHHHHHHHH-HHHSHHHHH-HHHHHHHHHHHHHHHHHHHTTTSE--SEEEHHHHHHHHHHHHHHH
T ss_pred cccccc-ccccccccccccccccc-ccccccccc-cccccccccccccccccccccccc--ceeeeeccccccccccccc
Confidence 112223 55667899999999986 555555 55 888999999999999998865432 2456554 45555666999
Q ss_pred HHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHh-------c
Q 022341 189 IMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEE-------R 261 (298)
Q Consensus 189 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------~ 261 (298)
++||.++++.+++....+....+.+..........+...+|++..+.....+..... .+...++....+++ .
T Consensus 156 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~ 234 (463)
T PF00067_consen 156 VLFGKDFGSLDDEDFEEFLEAFDELFELLSNFFWNLPFFFPWLKYLPTPLFRRFKRA-RDRLRKYIKEIIEERREELDDG 234 (463)
T ss_dssp HHHSSHHHGTTHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCTSSHHHHHHHHHH-HHHHHHHHHHHHHHHHHSHHSS
T ss_pred ccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc
Confidence 999998875544433333333333322221111112345564442222211111111 11222222222222 1
Q ss_pred --ccCChHHHHHhhc--ccC--CCCHHHHHHHHHHHhhcccC
Q 022341 262 --NLKCAIDHILDAQ--TKG--EINEDNVLYIVENINVAGMF 297 (298)
Q Consensus 262 --~~~d~ld~ll~~~--~~~--~~t~~~i~~~~~~l~~aG~~ 297 (298)
...|+++.+|++. .++ .+|++++...+.++++||+.
T Consensus 235 ~~~~~d~l~~ll~~~~~~~~~~~ls~~~i~~~~~~~~~ag~d 276 (463)
T PF00067_consen 235 DESRRDLLDSLLQASSDSDGPSGLSDEEIAAELLTLLFAGHD 276 (463)
T ss_dssp SSSCSSHHHHHHHHHHTTTTTSSSSHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccc
Confidence 2579999999875 333 69999999999999999975
No 20
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.94 E-value=1.6e-25 Score=204.74 Aligned_cols=240 Identities=18% Similarity=0.249 Sum_probs=160.1
Q ss_pred CCCCCCCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcch-
Q 022341 28 GKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVV- 106 (298)
Q Consensus 28 ~~~~~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~- 106 (298)
.+..+.||||+++|++||++++....++..+.+++++||++|++|+|+.++|+++||+++++|+.++...| ++....
T Consensus 31 ~~~~~~Ppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~--~~~~~~~ 108 (463)
T PLN02196 31 STKLPLPPGTMGWPYVGETFQLYSQDPNVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKSHLF--KPTFPAS 108 (463)
T ss_pred CCCCCCCCCCCCCCccchHHHHHhcCHHHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCCCcc--cccCchH
Confidence 34567889999999999998764444788899999999999999999999999999999999999887766 343222
Q ss_pred hhhhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhh-HHHHHHHHHHH
Q 022341 107 FDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVL-RRRLQLMMYNN 185 (298)
Q Consensus 107 ~~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~ 185 (298)
.....|. ..++..+|+.|+++||++. +.|+++.++.+.+.++++++++++.|... .++ ...+...++++
T Consensus 109 ~~~~~g~--~~l~~~~g~~w~~~Rk~l~-~~f~~~~l~~~~~~i~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~v 178 (463)
T PLN02196 109 KERMLGK--QAIFFHQGDYHAKLRKLVL-RAFMPDAIRNMVPDIESIAQESLNSWEGT-------QINTYQEMKTYTFNV 178 (463)
T ss_pred HHHHcCc--ccccccCcHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHcCCCC-------eEEeHHHHHHHHHHH
Confidence 2223332 2356678999999999975 78888888889999999999999888532 233 33455566677
Q ss_pred HHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccc--cchhhHHHHHHHHHHHHHHHHHHHHHhc--
Q 022341 186 MYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRP--FLRGYLKICKEVKERRLQLFKDYFVEER-- 261 (298)
Q Consensus 186 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~-- 261 (298)
++.++||.+.....+ .+... ...+...+ +.+|+..+ ..+...+.. +...++....++++
T Consensus 179 ~~~~~fG~~~~~~~~----~~~~~---~~~~~~~~-----~~~~~~~p~~~~~~~~~a~-----~~~~~~~~~~i~~~~~ 241 (463)
T PLN02196 179 ALLSIFGKDEVLYRE----DLKRC---YYILEKGY-----NSMPINLPGTLFHKSMKAR-----KELAQILAKILSKRRQ 241 (463)
T ss_pred HHHHHcCCCCchHHH----HHHHH---HHHHhcch-----hcccccCCCccchHHHHHH-----HHHHHHHHHHHHHHhh
Confidence 999999986421111 11111 11111111 11232111 111111111 12222333333222
Q ss_pred ---ccCChHHHHHhhcccCCCCHHHHHHHHHHHhhcccCC
Q 022341 262 ---NLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 262 ---~~~d~ld~ll~~~~~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
...|+++.+++. .+.++++++.+++.++++||+++
T Consensus 242 ~~~~~~d~l~~ll~~--~~~l~~~ei~~~~~~~~~Ag~dT 279 (463)
T PLN02196 242 NGSSHNDLLGSFMGD--KEGLTDEQIADNIIGVIFAARDT 279 (463)
T ss_pred cCCCcccHHHHHHhc--CCCCCHHHHHHHHHHHHHhhhHH
Confidence 256899999863 24689999999999999999864
No 21
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.94 E-value=2.8e-25 Score=203.11 Aligned_cols=250 Identities=14% Similarity=0.271 Sum_probs=155.0
Q ss_pred HHHHHhhcCCCCCCCCCCCCCccccccccCCC----CcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcC
Q 022341 20 AITVSKLRGKRFKLPPGPLPVPVFGNWLQVGD----DLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQG 95 (298)
Q Consensus 20 ~~~~~~~~~~~~~~ppGP~~~PiiGnl~~l~~----~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~ 95 (298)
.++.++.+.++.++||||.++|++||++++.. ..++..+.+|+++||++|++++|++++|+++||++++++|.++.
T Consensus 18 ~~~~~~~~~~~~~lppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~pe~~~~il~~~~ 97 (472)
T PLN02987 18 FLLLRRTRYRRMRLPPGSLGLPLVGETLQLISAYKTENPEPFIDERVARYGSLFMTHLFGEPTVFSADPETNRFILQNEG 97 (472)
T ss_pred HHHHHhhccCCCCCcCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhchhhhhhhcCCCeEEEeCHHHHHHHHhCCC
Confidence 33445666666778999999999999988732 23566789999999999999999999999999999999999998
Q ss_pred ccccCCCCcchhhhhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHH-HHHHHHHHHHHHHhcCcccccCChhh
Q 022341 96 VEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRF-NWEDEAARVVEDVKKDPEAATNGIVL 174 (298)
Q Consensus 96 ~~f~~r~~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (298)
..|+.++.. ....+.|+ .+ ++..+|+.|+++||++. ++++.+..+.+.. .+.+.++..++.|. +.++
T Consensus 98 ~~f~~~~~~-~~~~~lg~-~~-l~~~~g~~wr~~R~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~v~ 165 (472)
T PLN02987 98 KLFECSYPG-SISNLLGK-HS-LLLMKGNLHKKMHSLTM-SFANSSIIKDHLLLDIDRLIRFNLDSWS--------SRVL 165 (472)
T ss_pred ceEEecCcH-HHHHHhCc-cc-ccccCcHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHHhhc--------ccee
Confidence 888776432 22244442 23 45568999999999864 5555444444321 12223333333331 1234
Q ss_pred H-HHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHH
Q 022341 175 R-RRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLF 253 (298)
Q Consensus 175 ~-~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~ 253 (298)
+ ..+...+++++++++||.+.+...+...+.+. .....+ ..+++|++.+..+...+.. ++..++
T Consensus 166 ~~~~~~~~t~~vi~~~~fg~~~~~~~~~~~~~~~-------~~~~~~---~~~~~p~l~~~~~~~~~~~-----~~~~~~ 230 (472)
T PLN02987 166 LMEEAKKITFELTVKQLMSFDPGEWTESLRKEYV-------LVIEGF---FSVPLPLFSTTYRRAIQAR-----TKVAEA 230 (472)
T ss_pred hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH-------HHHhhh---hcCCCcCCCchHHHHHHHH-----HHHHHH
Confidence 3 44555566779999999865321111111111 111111 1234565432122211111 122222
Q ss_pred HHHHHHh---------cccCChHHHHHhhcccCCCCHHHHHHHHHHHhhcccCC
Q 022341 254 KDYFVEE---------RNLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 254 ~~~~i~~---------~~~~d~ld~ll~~~~~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
....+++ ...+|+++.|++.. ++++++++.+.+.++++||+++
T Consensus 231 ~~~~i~~r~~~~~~~~~~~~d~l~~ll~~~--~~~~~~ei~~~~~~l~~Ag~~t 282 (472)
T PLN02987 231 LTLVVMKRRKEEEEGAEKKKDMLAALLASD--DGFSDEEIVDFLVALLVAGYET 282 (472)
T ss_pred HHHHHHHHHhhhhccCcccccHHHHHHhcC--CCCCHHHHHHHHHHHHHhccch
Confidence 2222211 12469999999763 3699999999999999999874
No 22
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.94 E-value=4.7e-25 Score=203.19 Aligned_cols=252 Identities=13% Similarity=0.115 Sum_probs=150.7
Q ss_pred CCCCCCccccccccCCCCc--chHHHHHHHHHhCCeEE---EeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhhh
Q 022341 35 PGPLPVPVFGNWLQVGDDL--NHRNLSDLAKKYGDVLL---LRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDI 109 (298)
Q Consensus 35 pGP~~~PiiGnl~~l~~~~--~~~~~~~~~~~yG~i~~---~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~~ 109 (298)
|||+++|++||++++.... .+.++.+..++||..++ .|+|+.|+|+++||+++++||.++...|++++.......
T Consensus 34 p~p~~~pl~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i~~il~~~~~~~~k~~~~~~~~~ 113 (500)
T PLN02169 34 PILKNWPFLGMLPGMLHQIPRIYDWTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNIHHILSSNFGNYPKGPEFKKIFD 113 (500)
T ss_pred CCCCCCCcccchHHHHHccCcHHHHHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHHHHHHhhCcccCCCcHHHHHHHH
Confidence 8999999999997764331 22344444455887665 688999999999999999999998777777653322233
Q ss_pred hccCCCceEEecCChhHHHHhhhhcccccchHHHH--hhHHHHHHHHHHHHHHHhcCcccccCChhhHHH-HHHHHHHHH
Q 022341 110 FTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQ--QQRFNWEDEAARVVEDVKKDPEAATNGIVLRRR-LQLMMYNNM 186 (298)
Q Consensus 110 ~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~i 186 (298)
+.|+| +++++|+.||++||+++ ++|+..... .+.+.++++++.+++.+.+..+. +.++++.+ +...++++|
T Consensus 114 ~~g~g---l~~~~g~~Wr~~Rk~l~-p~F~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~vd~~~~~~~~t~dvi 187 (500)
T PLN02169 114 VLGEG---ILTVDFELWEDLRKSNH-ALFHNQDFIELSLSSNKSKLKEGLVPFLDNAAHE--NIIIDLQDVFMRFMFDTS 187 (500)
T ss_pred hhcCc---ccccCcHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCeEeHHHHHHHHHHHHH
Confidence 44544 66778999999999975 888776554 23466777788888888653221 23466655 455566779
Q ss_pred HHHHhccccCCCCch-HHHHHHHHHHHHHhhhhccCCcccccccccc----ccc-hhhHHHHHHHHHHHHHHHHHHHHHh
Q 022341 187 YRIMFDRRFESQDDP-LFNRLKALNGERSRLAQSFEYNYGDFIPILR----PFL-RGYLKICKEVKERRLQLFKDYFVEE 260 (298)
Q Consensus 187 ~~~~fG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~----~~~-~~~~~~~~~~~~~~~~~~~~~~i~~ 260 (298)
++++||.+.++.+.+ ....+....+....... ..++.|++. .++ .+..+...+. .+..+++...++++
T Consensus 188 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~I~~ 261 (500)
T PLN02169 188 SILMTGYDPMSLSIEMLEVEFGEAADIGEEAIY-----YRHFKPVILWRLQNWIGIGLERKMRTA-LATVNRMFAKIISS 261 (500)
T ss_pred HhheeCCCccccCCCCCCCHHHHHHHHHHHHHH-----hHHhccHHHHHHHHHhCCchhhHHHHH-HHHHHHHHHHHHHH
Confidence 999999987543211 00111111111111110 011222111 000 0000111110 11222222222211
Q ss_pred c------------ccCChHHHHHhhccc-----CCCCHHHHHHHHHHHhhcccCC
Q 022341 261 R------------NLKCAIDHILDAQTK-----GEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 261 ~------------~~~d~ld~ll~~~~~-----~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
+ ..+|+++.+++..++ +.++++++++++.++++||+++
T Consensus 262 r~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~i~~~~~~~l~AG~dT 316 (500)
T PLN02169 262 RRKEEISRAETEPYSKDALTYYMNVDTSKYKLLKPKKDKFIRDVIFSLVLAGRDT 316 (500)
T ss_pred HHHHhhccccccCCCcCHHHHHHhccccccccccCCChHHHHHHHHHHHHhchhH
Confidence 1 136899999975321 2478999999999999999875
No 23
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.93 E-value=6.5e-24 Score=195.79 Aligned_cols=246 Identities=20% Similarity=0.262 Sum_probs=156.3
Q ss_pred CCCCCCCCCCCCCccccccccCCC----CcchHHHHHHHHHhCC--eEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCC
Q 022341 28 GKRFKLPPGPLPVPVFGNWLQVGD----DLNHRNLSDLAKKYGD--VLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSR 101 (298)
Q Consensus 28 ~~~~~~ppGP~~~PiiGnl~~l~~----~~~~~~~~~~~~~yG~--i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r 101 (298)
.++.++||||+++|++||++++.. ..++..+.+++++||+ +|++++|+.++|+++||+++++|+.++ ..|.++
T Consensus 38 ~~~~~lpPgp~~~PilG~l~~~~~~~~~~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~-~~f~~~ 116 (490)
T PLN02302 38 EGQPPLPPGDLGWPVIGNMWSFLRAFKSSNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDD-DAFEPG 116 (490)
T ss_pred cCCCCCcCCCCCCCccccHHHHHHhcccCCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCC-CccccC
Confidence 344578999999999999987632 2367788999999997 799999999999999999999999865 445544
Q ss_pred CCcchhhhhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHH
Q 022341 102 TRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQL 180 (298)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~ 180 (298)
....... +.|.+ .++..+|+.|+++||++.+.+.+++.++.+.+.++++++.+++.+... +.+++. .+..
T Consensus 117 ~~~~~~~-~~g~~--~~~~~~g~~w~~~R~~~~~~f~~~~~l~~~~~~i~~~v~~~~~~~~~~------~~v~~~~~~~~ 187 (490)
T PLN02302 117 WPESTVE-LIGRK--SFVGITGEEHKRLRRLTAAPVNGPEALSTYIPYIEENVKSCLEKWSKM------GEIEFLTELRK 187 (490)
T ss_pred CchhHHH-Hhccc--cccccCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcCC------CCEehHHHHHH
Confidence 3222222 33322 345568999999999986444467788889999999999999988542 124443 4444
Q ss_pred HHHHHHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 022341 181 MMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEE 260 (298)
Q Consensus 181 ~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 260 (298)
.+++++++++||.+.+... +.+... .......... ....+|... .....+.. +.+.++....+++
T Consensus 188 ~~~~vi~~~~~G~~~~~~~----~~~~~~---~~~~~~~~~~-~~~~~p~~~--~~~~~~~~-----~~l~~~~~~~i~~ 252 (490)
T PLN02302 188 LTFKIIMYIFLSSESELVM----EALERE---YTTLNYGVRA-MAINLPGFA--YHRALKAR-----KKLVALFQSIVDE 252 (490)
T ss_pred HHHHHHHHHHcCCCChHHH----HHHHHH---HHHHHHHhhh-CCcCCCchh--hHHHHHHH-----HHHHHHHHHHHHH
Confidence 5566699999998653211 111111 1111110000 011233221 11111111 1111122111111
Q ss_pred ----------cccCChHHHHHhhcc-cC-CCCHHHHHHHHHHHhhcccCC
Q 022341 261 ----------RNLKCAIDHILDAQT-KG-EINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 261 ----------~~~~d~ld~ll~~~~-~~-~~t~~~i~~~~~~l~~aG~~~ 298 (298)
....|+++.++++.+ ++ .+++++|...+.++++||+++
T Consensus 253 ~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~i~~~~~~~~~Ag~dt 302 (490)
T PLN02302 253 RRNSRKQNISPRKKDMLDLLLDAEDENGRKLDDEEIIDLLLMYLNAGHES 302 (490)
T ss_pred HHHhhhccCCCCcCCHHHHHHhhhccCCCCCCHHHHHHHHHHHHHhhHHH
Confidence 124699999998643 23 589999999999999999864
No 24
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.93 E-value=1.3e-24 Score=198.31 Aligned_cols=244 Identities=17% Similarity=0.228 Sum_probs=153.0
Q ss_pred CCCCCCCCCCCCccccccccCCC----CcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCc
Q 022341 29 KRFKLPPGPLPVPVFGNWLQVGD----DLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN 104 (298)
Q Consensus 29 ~~~~~ppGP~~~PiiGnl~~l~~----~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~ 104 (298)
++.++||||+++|++||++++.. ..++..+.+|+++||+||++|+|+.++||++||++++++|.+++..|+.|..
T Consensus 4 ~~~~~Ppg~~~~P~iG~~~~l~~~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~~~- 82 (452)
T PLN03141 4 KKSRLPKGSLGWPVIGETLDFISCAYSSRPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPAYP- 82 (452)
T ss_pred CCCCCCCCCCCCCchhhHHHHHhhcccCChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeeccCc-
Confidence 45578999999999999988732 2367788999999999999999999999999999999999999888887642
Q ss_pred chhhhhccCCCceEEecCChhHHHHhhhhcccccchHHHHh-hHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHHHH
Q 022341 105 VVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQ-QRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQLMM 182 (298)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~ 182 (298)
.....+.|. +.++..+|+.||++|+++. +.|+...+.. ..+.+.+.++++++.+.. ++.+++. .+...+
T Consensus 83 ~~~~~l~g~--~~~~~~~g~~wr~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 153 (452)
T PLN03141 83 KSLTELMGK--SSILLINGSLQRRVHGLIG-AFLKSPHLKAQITRDMERYVSESLDSWRD------DPPVLVQDETKKIA 153 (452)
T ss_pred hhHHHHhCc--ccccccCcHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHHHHHhccC------CCCEEhHHHHHHHH
Confidence 233344543 2355668999999999875 5565544433 344555555655555532 1234443 445556
Q ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHh--
Q 022341 183 YNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEE-- 260 (298)
Q Consensus 183 ~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-- 260 (298)
+++|++++||.+... . ...+...... ...... .+..++|... .....+.. ++..++....+++
T Consensus 154 ~~vi~~~~~G~~~~~---~-~~~~~~~~~~---~~~~~~-~~~~~~p~~~--~~~~~~~~-----~~l~~~~~~~i~~~~ 218 (452)
T PLN03141 154 FEVLVKALISLEPGE---E-MEFLKKEFQE---FIKGLM-SLPIKLPGTR--LYRSLQAK-----KRMVKLVKKIIEEKR 218 (452)
T ss_pred HHHHHHHHcCCCchH---H-HHHHHHHHHH---HhhhHH-hCccCCCchH--hHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 677999999975432 1 1222111111 111100 0112334321 11111111 1112222222211
Q ss_pred -----c------ccCChHHHHHhhcccCCCCHHHHHHHHHHHhhcccCC
Q 022341 261 -----R------NLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 261 -----~------~~~d~ld~ll~~~~~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
. .+.|++|.++++. .+.+++++|..++.++++||+++
T Consensus 219 ~~~~~~~~~~~~~~~d~l~~ll~~~-~~~l~~~~i~~~~~~ll~Ag~dT 266 (452)
T PLN03141 219 RAMKNKEEDETGIPKDVVDVLLRDG-SDELTDDLISDNMIDMMIPGEDS 266 (452)
T ss_pred HHHhccCccccCChhhHHHHHHhcC-CCCCCHHHHHHHHHHHHHhcchh
Confidence 1 1468999999764 34689999999999999999864
No 25
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.92 E-value=1.9e-23 Score=193.69 Aligned_cols=157 Identities=19% Similarity=0.309 Sum_probs=114.5
Q ss_pred CCCCCCCccccccccCCCCcchHHHHHHHHHh---CCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcc-hhhh
Q 022341 34 PPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKY---GDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV-VFDI 109 (298)
Q Consensus 34 ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~y---G~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~-~~~~ 109 (298)
+|||+++|++||++++.. .+..+.+|.++| |++|++++|+.++|+++||+++++|+.++...|..++... ....
T Consensus 32 ~pgp~~~p~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~~ 109 (516)
T PLN03195 32 RKGPKSWPIIGAALEQLK--NYDRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGEVYHSYMEV 109 (516)
T ss_pred cCCCCCCCeecchHHHHh--ccchHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcHhHHHHHHH
Confidence 589999999999976532 244577888888 8999999999999999999999999987655665543221 1223
Q ss_pred hccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHH-HHHHHHHHHHHhcCcccccCChhhHHHHH-HHHHHHHH
Q 022341 110 FTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNW-EDEAARVVEDVKKDPEAATNGIVLRRRLQ-LMMYNNMY 187 (298)
Q Consensus 110 ~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~i~ 187 (298)
+.+++ +++.+|+.|+++||++ ++.|+.+.++.+.+.+ ++.++.+++.+.+... .++++|+.... ..++++|+
T Consensus 110 ~~g~~---l~~~~g~~w~~~Rr~l-~~~fs~~~l~~~~~~~~~~~~~~l~~~l~~~~~--~~~~vd~~~~~~~~~~dvi~ 183 (516)
T PLN03195 110 LLGDG---IFNVDGELWRKQRKTA-SFEFASKNLRDFSTVVFREYSLKLSSILSQASF--ANQVVDMQDLFMRMTLDSIC 183 (516)
T ss_pred HhcCe---eeccCcHHHHHHHHhc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCeEcHHHHHHHHHHHHHH
Confidence 34443 5678899999999987 5778888888888765 5556677776754211 12346665544 45556699
Q ss_pred HHHhccccCCC
Q 022341 188 RIMFDRRFESQ 198 (298)
Q Consensus 188 ~~~fG~~~~~~ 198 (298)
+++||.+++..
T Consensus 184 ~~~fG~~~~~~ 194 (516)
T PLN03195 184 KVGFGVEIGTL 194 (516)
T ss_pred HHHhCCCcccc
Confidence 99999987643
No 26
>PLN02738 carotene beta-ring hydroxylase
Probab=99.90 E-value=6.9e-22 Score=185.76 Aligned_cols=246 Identities=19% Similarity=0.248 Sum_probs=156.6
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhhhhccCCCceEEec
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTV 121 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~~~~~~~~~~~~~~ 121 (298)
.+||+..+...+.+..+.+|+++|||||++++|+.++|+|+||+.+++|+.++...|+.++.......+.+. + +++.
T Consensus 141 ~~G~l~~i~~g~~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~~~~~~~~~~g~--~-l~~~ 217 (633)
T PLN02738 141 AKGSISAVRGEAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEILEFVMGK--G-LIPA 217 (633)
T ss_pred ccCcHHHhcCchHHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcchHHHHhhccCC--c-eecC
Confidence 357777776555678899999999999999999999999999999999999877777776532222233333 3 5667
Q ss_pred CChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHHHHH-HHHHHHHHHHhccccCCCC-
Q 022341 122 YGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQL-MMYNNMYRIMFDRRFESQD- 199 (298)
Q Consensus 122 ~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~fG~~~~~~~- 199 (298)
+|+.||++|+.+ .++|+.+.++.+.+++.++++.+++.|.+..+ .++++++..... .++++|++++||.++++..
T Consensus 218 dge~wr~rRr~l-~p~Fs~~~v~~l~~~i~~~v~~L~~~L~~~~~--~g~~vdl~~~~~~lt~DVI~~~~FG~~~~~~~~ 294 (633)
T PLN02738 218 DGEIWRVRRRAI-VPALHQKYVAAMISLFGQASDRLCQKLDAAAS--DGEDVEMESLFSRLTLDIIGKAVFNYDFDSLSN 294 (633)
T ss_pred CcHHHHHHHHhc-cHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcEeHHHHHHHHHHHHHHHHHhCCCcccccc
Confidence 899999999987 58899988889999999999999999976432 133567665444 4556699999999886432
Q ss_pred -chHHHHHHHHHHHHHhhhhccCCcccccccccccc---chhhHHHHHHHHHHHHHHHH---HHHHHh-----------c
Q 022341 200 -DPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPF---LRGYLKICKEVKERRLQLFK---DYFVEE-----------R 261 (298)
Q Consensus 200 -~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~---~~~~~~~~~~~~~~~~~~~~---~~~i~~-----------~ 261 (298)
+...+.+......... ..........+|.+... .+...+..+. +......+. .+.+++ .
T Consensus 295 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~-l~~~~~~li~~~~~~~~~~~~~~~~~~~~~ 371 (633)
T PLN02738 295 DTGIVEAVYTVLREAED--RSVSPIPVWEIPIWKDISPRQRKVAEALKL-INDTLDDLIAICKRMVEEEELQFHEEYMNE 371 (633)
T ss_pred chHHHHHHHHHHHHHHH--HhhcchhhhhhhHHhhhchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhcccchhccccc
Confidence 2222222222211110 00000000112322211 1111111111 111111111 111111 1
Q ss_pred ccCChHHHHHhhcccCCCCHHHHHHHHHHHhhcccCC
Q 022341 262 NLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 262 ~~~d~ld~ll~~~~~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
...|+++.|++.. ..+|+++|.+++.++++||+++
T Consensus 372 ~~~dil~~Ll~~~--~~ls~~~L~~e~~~ll~AG~eT 406 (633)
T PLN02738 372 RDPSILHFLLASG--DDVSSKQLRDDLMTMLIAGHET 406 (633)
T ss_pred ccchHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCcc
Confidence 1357999999753 3589999999999999999985
No 27
>PLN02936 epsilon-ring hydroxylase
Probab=99.90 E-value=7.3e-22 Score=181.80 Aligned_cols=160 Identities=25% Similarity=0.278 Sum_probs=121.8
Q ss_pred CCCCCCCCccccccccC----CCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhh
Q 022341 33 LPPGPLPVPVFGNWLQV----GDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFD 108 (298)
Q Consensus 33 ~ppGP~~~PiiGnl~~l----~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~ 108 (298)
+..|-.|||++|+.++. ....++..+.+|+++||++|++++|+.++|+++||+++++|+.+.+..|+.++......
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~~~ 92 (489)
T PLN02936 13 LWGDDSGIPVADAKLEDVTDLLGGALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLVAEVSE 92 (489)
T ss_pred cCCCCCCCccHHhHHhhHHHHhccHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcchhhhhH
Confidence 45688899999988764 22236778999999999999999999999999999999999988778888775433333
Q ss_pred hhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhH-HHHHHHHHHHHHHHhcCcccccCChhhHHHHH-HHHHHHH
Q 022341 109 IFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQR-FNWEDEAARVVEDVKKDPEAATNGIVLRRRLQ-LMMYNNM 186 (298)
Q Consensus 109 ~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~i 186 (298)
.+.+.+ ++..+|+.||++||++ ++.|+.+.+..+. ++++++++.+++.|.+... .+.++++.+.. ..++++|
T Consensus 93 ~~~~~~---i~~~~g~~wk~~Rk~l-~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~--~g~~vd~~~~~~~~~~dvi 166 (489)
T PLN02936 93 FLFGSG---FAIAEGELWTARRRAV-VPSLHRRYLSVMVDRVFCKCAERLVEKLEPVAL--SGEAVNMEAKFSQLTLDVI 166 (489)
T ss_pred HHhcCc---cccCCchHHHHHHHhh-cCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCceeHHHHHHHHHHHHH
Confidence 334433 5567899999999987 4777777776654 4778899999999976432 12356765544 4555669
Q ss_pred HHHHhccccCCC
Q 022341 187 YRIMFDRRFESQ 198 (298)
Q Consensus 187 ~~~~fG~~~~~~ 198 (298)
++++||.+++..
T Consensus 167 ~~~~fG~~~~~~ 178 (489)
T PLN02936 167 GLSVFNYNFDSL 178 (489)
T ss_pred HHHHcCCCcccc
Confidence 999999998753
No 28
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.87 E-value=2.5e-20 Score=164.69 Aligned_cols=168 Identities=19% Similarity=0.337 Sum_probs=132.7
Q ss_pred CCCCCCCCCCCCccccccccC---CCCcchHHHHHHHHHhCCeEEEe-eCCeeEEEeCCHHHHHHHHHhcCccccCCC-C
Q 022341 29 KRFKLPPGPLPVPVFGNWLQV---GDDLNHRNLSDLAKKYGDVLLLR-MGQRNLVVVSSPDHAKEVLHTQGVEFGSRT-R 103 (298)
Q Consensus 29 ~~~~~ppGP~~~PiiGnl~~l---~~~~~~~~~~~~~~~yG~i~~~~-~g~~~~vvi~~p~~i~evl~~~~~~f~~r~-~ 103 (298)
++...+|||+++|++|.++.+ ..++.|....+..++||+||+.. +|+...|.+.||++++.|+...+. ++-|| .
T Consensus 47 r~~~~IP~p~~~~~l~~l~~~~~~~~~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~EG~-~P~Rp~~ 125 (519)
T KOG0159|consen 47 RPFEEIPGPKGLPFLGLLWIWRAGGATKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNEGK-YPFRPLL 125 (519)
T ss_pred CChhhcCCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcCCC-CCCcccc
Confidence 345667999999999999843 33456788899999999999999 999999999999999999988764 36675 2
Q ss_pred cc---hhhhhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCccc-ccCChhhH-HHH
Q 022341 104 NV---VFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEA-ATNGIVLR-RRL 178 (298)
Q Consensus 104 ~~---~~~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~-~~~ 178 (298)
.+ .++...+... +++..+|+.|++.|..+.+.++.++.++.|.+.+++.++++++.++...+. ..+.+.|+ ..+
T Consensus 126 ~~~w~~~rd~~~~~~-Gl~~~~G~~W~~~Rs~ln~~ll~P~~v~~yl~~l~~V~~DF~~~l~~~r~~~~~~~~~D~~~~l 204 (519)
T KOG0159|consen 126 IEPWVAYRDFRGGVC-GLFLLEGPEWQRLRSALNPLLLQPQAVRRYLPQLNAVSDDFVERLRAQRDPERGELVPDFAQEL 204 (519)
T ss_pred cchhhhhHHhhccCC-CcccCCCHHHHHHHHHhchhhcCHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccchhHHHHH
Confidence 22 2233444332 367788999999999999999999999999999999999999999875542 12233444 456
Q ss_pred HHHHHHHHHHHHhccccCCC
Q 022341 179 QLMMYNNMYRIMFDRRFESQ 198 (298)
Q Consensus 179 ~~~~~~~i~~~~fG~~~~~~ 198 (298)
.++.+.+||.++||+++..-
T Consensus 205 ~~wslEsi~~V~l~~rlG~L 224 (519)
T KOG0159|consen 205 YRWSLESICLVLLGTRLGLL 224 (519)
T ss_pred HHHHHHHHHHHHHhcccccc
Confidence 77778889999999998754
No 29
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.79 E-value=2.4e-17 Score=152.11 Aligned_cols=247 Identities=13% Similarity=0.195 Sum_probs=143.7
Q ss_pred CCccccccccCCCCcchHHHHHHHHHhC-CeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCc-chhhhhccCCCc
Q 022341 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYG-DVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN-VVFDIFTGKGQD 116 (298)
Q Consensus 39 ~~PiiGnl~~l~~~~~~~~~~~~~~~yG-~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~-~~~~~~~~~~~~ 116 (298)
..++.|+....... .+.++..+.++++ .+++++.++. |+++||+.+++|+.++...|+..+.. .....+.|+|
T Consensus 48 ~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~~~~~~~~~~~g~g-- 122 (502)
T PLN02426 48 RAYLTASWAKDFDN-LCDWYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGKPFSAILGDLLGRG-- 122 (502)
T ss_pred CCCccHHHHHhccc-HHHHHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcHhHHHHHHHhcCCc--
Confidence 45688888654333 4666767888887 5777776543 89999999999999887777654322 2233444544
Q ss_pred eEEecCChhHHHHhhhhcccccchHHHHhhH--HHHHHHHHHHHHHHhcCcccccCChhhHHHH-HHHHHHHHHHHHhcc
Q 022341 117 MVFTVYGEHWRKMRRIMTVPFFTNKVVQQQR--FNWEDEAARVVEDVKKDPEAATNGIVLRRRL-QLMMYNNMYRIMFDR 193 (298)
Q Consensus 117 ~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~fG~ 193 (298)
+++.+|+.||++||++ ++.|+.+.++.+. .++++.++.+++.|.+..+...+.++|+.+. ...++++|++++||.
T Consensus 123 -i~~~~g~~wk~~Rk~l-~~~fs~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~ 200 (502)
T PLN02426 123 -IFNVDGDSWRFQRKMA-SLELGSVSIRSYAFEIVASEIESRLLPLLSSAADDGEGAVLDLQDVFRRFSFDNICKFSFGL 200 (502)
T ss_pred -eeecCcHHHHHHHHHh-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEcHHHHHHHHHHHHHHHHHhCC
Confidence 6778899999999987 5788877777663 5677777778888765332111245676654 445566699999999
Q ss_pred ccCCCCc--hHHHHHHHHHHHHHhhhhccCCccccccccccccc-hhhHHHHHHHHHHHHHHHHHHHHHhc------ccC
Q 022341 194 RFESQDD--PLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFL-RGYLKICKEVKERRLQLFKDYFVEER------NLK 264 (298)
Q Consensus 194 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~------~~~ 264 (298)
+++..+. +.......+ +...............+++.+..++ .+..+...+. .+...++....++++ ...
T Consensus 201 ~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~I~~r~~~~~~~~~ 278 (502)
T PLN02426 201 DPGCLELSLPISEFADAF-DTASKLSAERAMAASPLLWKIKRLLNIGSERKLKEA-IKLVDELAAEVIRQRRKLGFSASK 278 (502)
T ss_pred CCcccCCCCCccHHHHHH-HHHHHHHHHHHhcchhHHHHHHHhcccchhHHHHHH-HHHHHHHHHHHHHHHHhcccCCcc
Confidence 8764321 111111111 1111110000000001111111000 0001111111 122333333333322 246
Q ss_pred ChHHHHHhhcccCCCCHHHHHHHHHHHhhcccCC
Q 022341 265 CAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 265 d~ld~ll~~~~~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
|+++.+++.. .+++++.+++.++++||+++
T Consensus 279 dll~~ll~~~----~~~~~l~~~~~~~l~AG~dT 308 (502)
T PLN02426 279 DLLSRFMASI----NDDKYLRDIVVSFLLAGRDT 308 (502)
T ss_pred hHHHHHHhcC----CCHHHHHHHHHHHHHhccch
Confidence 9999999753 27889999999999999875
No 30
>PLN02648 allene oxide synthase
Probab=99.70 E-value=9.5e-17 Score=146.60 Aligned_cols=161 Identities=11% Similarity=0.128 Sum_probs=116.0
Q ss_pred CCCCCCCCCCccccccccCCC----CcchHHHHHHHHHhCC-eEEEeeCCeeE-------EEeCCHHHHHHHHHh----c
Q 022341 31 FKLPPGPLPVPVFGNWLQVGD----DLNHRNLSDLAKKYGD-VLLLRMGQRNL-------VVVSSPDHAKEVLHT----Q 94 (298)
Q Consensus 31 ~~~ppGP~~~PiiGnl~~l~~----~~~~~~~~~~~~~yG~-i~~~~~g~~~~-------vvi~~p~~i~evl~~----~ 94 (298)
.+.|||+.|||++|.+.++.. ..+...+.+..++||+ ||+..+++.|+ |++++|++++.||.+ +
T Consensus 16 ~~~PPg~~g~P~iG~~~~~~~~~~~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~~~~~~ 95 (480)
T PLN02648 16 LREIPGSYGLPFLGAIKDRLDYFYFQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDVSKVDK 95 (480)
T ss_pred CCCCCCCCCCcCcchhhhhhhHHHhcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecchhccc
Confidence 456899999999999976432 1235678888999999 99999988665 999999999999974 4
Q ss_pred CccccCCCCcchhhhhccCCC-ceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChh
Q 022341 95 GVEFGSRTRNVVFDIFTGKGQ-DMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIV 173 (298)
Q Consensus 95 ~~~f~~r~~~~~~~~~~~~~~-~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (298)
...|.... ..... ++|.+. ..++..+|+.|+++||++. ++|+. ..+.|.+.+++.++.+++.|..... .++.+
T Consensus 96 ~~~~~~~~-~~~~~-l~G~~~~~s~~~~~g~~H~r~Rrll~-~~f~~-~~~~~~~~m~~~~~~~~~~w~~~~~--~~~~v 169 (480)
T PLN02648 96 RDVFTGTY-MPSTA-FTGGYRVLSYLDPSEPKHAKLKSFLF-ELLKS-RHRRFIPEFRAAFAELFDTWEAELA--KKGKA 169 (480)
T ss_pred cccceeee-ccCcc-ccCCceeeeecCCCCchHHHHHHHHH-HHHHH-hhhhhhhHHHHHHHHHHHHHHHHHh--hCCCc
Confidence 44344321 12233 555321 1356678999999999985 77775 5577999999999999999964311 12246
Q ss_pred hHHHH-HHHHHHHHHHHHhccccCC
Q 022341 174 LRRRL-QLMMYNNMYRIMFDRRFES 197 (298)
Q Consensus 174 ~~~~~-~~~~~~~i~~~~fG~~~~~ 197 (298)
++... ...++.+|++++||.+.+.
T Consensus 170 dv~~~~~~lt~~vi~~~lfG~~~~~ 194 (480)
T PLN02648 170 EFNDPLDQMAFNFLCKALTGKDPSE 194 (480)
T ss_pred cccchHHHHHHHHHHHHHcCCCcch
Confidence 65444 4455666999999986543
No 31
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.58 E-value=5.5e-13 Score=116.09 Aligned_cols=245 Identities=16% Similarity=0.191 Sum_probs=147.0
Q ss_pred CCCCCCCCC-ccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCC-cchhhh
Q 022341 32 KLPPGPLPV-PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTR-NVVFDI 109 (298)
Q Consensus 32 ~~ppGP~~~-PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~-~~~~~~ 109 (298)
..||--.+| |++|++..+..+ +...+.+..+|||+||++.++++.+=++.+|+...-+|..+...++-+.. ......
T Consensus 31 ~~PPli~gwiP~lG~a~~fgk~-P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld~~~~~~~l~~~ 109 (486)
T KOG0684|consen 31 KEPPLIKGWIPWLGSALAFGKD-PLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADLDFEEAYSKLTTP 109 (486)
T ss_pred CCCcccccCcchhhHHHHhccC-HHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCcccccCHHHHHHHhhhh
Confidence 466666664 899999999876 88899999999999999999999999999999999999665444332221 112233
Q ss_pred hccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHH-HhcCcccccCChhhHHHHHHHHHHHHHH
Q 022341 110 FTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVED-VKKDPEAATNGIVLRRRLQLMMYNNMYR 188 (298)
Q Consensus 110 ~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (298)
..|. ++.....++...++.+++ ...+.....++|.+.|.++..+.++. +.+. .++.....+...+..-+.+
T Consensus 110 vFg~--~v~~d~~~~~~~e~~~~~-k~~L~~~~lk~~~e~m~~el~~~f~~~~~~s-----~~~d~l~~~~~~ii~tAs~ 181 (486)
T KOG0684|consen 110 VFGK--GVVYDVPNHVMMEQKKFF-KSALGGVALKSLVELMLEELHAYFETSLGES-----GETDGLYTFCRLIIFTASR 181 (486)
T ss_pred hcCC--CccccCCCchHHHHHHHH-HHHhchhhHHHHHHHHHHHHHHHHhcccccc-----cchhHhhhhhHHHhhhhHH
Confidence 4443 355555677788888876 46777777889999888888877776 3331 1122222333333333555
Q ss_pred HHhcccc-CCCCchHHHHHHHHHHHHHhhhhccCCccccccc-ccc-ccchhhHHHHHHHHHHHHHHHHHHHHH-hcc--
Q 022341 189 IMFDRRF-ESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIP-ILR-PFLRGYLKICKEVKERRLQLFKDYFVE-ERN-- 262 (298)
Q Consensus 189 ~~fG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p-~l~-~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~-- 262 (298)
++.|-+. ...++...+. +.++...| .++...|| +|- +..+... ++++ .+.+.....+. +++
T Consensus 182 ~ll~~e~r~~~d~~~a~l-------~~dLd~~F-~~~d~~FP~~LP~~~~r~~~-ra~~----~i~k~f~~~i~~rr~s~ 248 (486)
T KOG0684|consen 182 LLLGGEVRDQLDADVAKL-------YHDLDQGF-QPFDFLFPYNLPIPLLRRRD-RARK----KISKIFSKIILDRRASI 248 (486)
T ss_pred HhhhhhhhhhhcchHHHH-------HHHHhccc-cchHhhcccCCCcchhhhHH-HHHH----HHHHHHHHHHHHHHhcc
Confidence 5555433 2212111111 11222222 12223455 322 2233322 2222 22222222222 222
Q ss_pred ---cCChHHHHHhhcccC-CCCHHHHHHHHHHHhhcccCC
Q 022341 263 ---LKCAIDHILDAQTKG-EINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 263 ---~~d~ld~ll~~~~~~-~~t~~~i~~~~~~l~~aG~~~ 298 (298)
.+|+++.+++..+++ +.|++|+......++.||..+
T Consensus 249 s~~~~dmlq~l~~~y~dg~~~te~e~a~~li~~LwA~Q~n 288 (486)
T KOG0684|consen 249 SKWDNDMLQSLMEKYKDGRPTTEEEIAGLLIGLLWAGQHN 288 (486)
T ss_pred ccccHHHHHHHHHHhhcCCcCcHHHHHHHHHHHHHhcccc
Confidence 348888888843444 689999999999999999753
No 32
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.54 E-value=3e-13 Score=121.79 Aligned_cols=214 Identities=22% Similarity=0.303 Sum_probs=138.3
Q ss_pred HHHHHHHHHhCCeEEEeeCCee--EEEeCCHHHHHHHHHhcCccccCCCCcch----hhhhccCCCceEEecCChhHHHH
Q 022341 56 RNLSDLAKKYGDVLLLRMGQRN--LVVVSSPDHAKEVLHTQGVEFGSRTRNVV----FDIFTGKGQDMVFTVYGEHWRKM 129 (298)
Q Consensus 56 ~~~~~~~~~yG~i~~~~~g~~~--~vvi~~p~~i~evl~~~~~~f~~r~~~~~----~~~~~~~~~~~~~~~~g~~Wk~~ 129 (298)
.....+.+.||.++.++..+.- .+++++++++++++.++. .++++..... .....+ .+.+++.+|+.|.++
T Consensus 26 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~ll~~dg~~H~r~ 102 (411)
T COG2124 26 FFLERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDPR-FFSSALGAGLRPRLLRPVLG--DGSLLTLDGPEHTRL 102 (411)
T ss_pred hhHHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCcc-cccccccccccccchhhhcc--ccceeecCCHHHHHH
Confidence 3455667889999988876543 899999999999998764 2222221111 223333 334677899999999
Q ss_pred hhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHHHHHHHH-HHHHHHHhccccCCCCchHHHHHHH
Q 022341 130 RRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMY-NNMYRIMFDRRFESQDDPLFNRLKA 208 (298)
Q Consensus 130 Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~fG~~~~~~~~~~~~~~~~ 208 (298)
||++ ++.|+++.++.|.+.+.+.++++++.+ ... +.+++.++...++ .+|| .+||...+.. ... ...
T Consensus 103 Rkl~-~~~F~~~~~~~~~~~i~~~~~~~~~~~-~~~-----~~~~v~~~a~~l~~~vi~-~l~Gv~~~~~-~~~---~~~ 170 (411)
T COG2124 103 RKLL-APAFTPRALRGYRPLIREIADRLLDDL-WQG-----GADLVLDFAAELTLRVIA-ELLGVPLEDR-PQL---LRW 170 (411)
T ss_pred HHHh-ccccCHHHHHHHHHHHHHHHHHHHHhc-ccC-----CchhHHHHhhhhhHHHHH-HHhCCCHHHH-HHH---HHH
Confidence 9987 589999999999999999999999988 322 3455666655554 4588 9999865421 111 111
Q ss_pred HHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcc---cCChHHHHHhhcccC--CCCHHH
Q 022341 209 LNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERN---LKCAIDHILDAQTKG--EINEDN 283 (298)
Q Consensus 209 ~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~d~ld~ll~~~~~~--~~t~~~ 283 (298)
.. ..... .+ |...+.. .+.+. .. ....+.++...++++++ ..|+++.|+.+.+++ .+|++|
T Consensus 171 ~~----~~~~~-----~~--~~~~~~~-~~~~~-~~-a~~~~~~~~~~li~~rR~~~~~dlls~l~~a~~~~~~~lsd~E 236 (411)
T COG2124 171 SD----ALLLR-----LD--PDLGPEE-PWRRA-RA-ARRELDAYLRALIAERRAAPRDDLLSLLLSAEDDGGGRLSDDE 236 (411)
T ss_pred HH----HHHhc-----cC--cccCCcc-cHHHH-HH-HHHHHHHHHHHHHHHhccCCcccHHHHHHHHhhCCCCcCCHHH
Confidence 00 01000 01 2221110 01111 11 12345566666776654 578999999876655 499999
Q ss_pred HHHHHHHHhhcccCC
Q 022341 284 VLYIVENINVAGMFI 298 (298)
Q Consensus 284 i~~~~~~l~~aG~~~ 298 (298)
|.+.+..+++||+++
T Consensus 237 i~~~~~~ll~AGheT 251 (411)
T COG2124 237 IRDELITLLVAGHET 251 (411)
T ss_pred HHHHHHHHHHhhhHH
Confidence 999999999999875
No 33
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=79.00 E-value=11 Score=26.73 Aligned_cols=58 Identities=26% Similarity=0.350 Sum_probs=39.2
Q ss_pred CCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCe------eEEEeCCHHHHHHHHHh
Q 022341 33 LPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQR------NLVVVSSPDHAKEVLHT 93 (298)
Q Consensus 33 ~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~------~~vvi~~p~~i~evl~~ 93 (298)
+||--..+-++-||+ .+-....+-++.-+||+|-.+++|.. -.||-.|-.++|.+...
T Consensus 13 lppevnriLyirNLp---~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dh 76 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLP---FKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDH 76 (124)
T ss_pred CChhhheeEEEecCC---ccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHH
Confidence 444444455556663 22234566777788999999999963 46777888888887755
No 34
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=72.18 E-value=9.1 Score=26.03 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCcccc
Q 022341 14 FAAVVVAITVSKLRGKRFKLPPGPLPVPVFG 44 (298)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~ppGP~~~PiiG 44 (298)
+++++.|+.+.+.|+|. ..|--.|+||
T Consensus 45 il~VilwfvCC~kRkrs----RrPIYrPvI~ 71 (94)
T PF05393_consen 45 ILLVILWFVCCKKRKRS----RRPIYRPVIG 71 (94)
T ss_pred HHHHHHHHHHHHHhhhc----cCCccccccc
Confidence 33444455555544433 2345678888
No 35
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=72.18 E-value=14 Score=23.27 Aligned_cols=55 Identities=20% Similarity=0.387 Sum_probs=37.9
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeCC--------eeEEEeCCHHHHHHHHHh-cCcccc
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ--------RNLVVVSSPDHAKEVLHT-QGVEFG 99 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvi~~p~~i~evl~~-~~~~f~ 99 (298)
++||++ .+-....+.++..+||++-.+++.. .-.|...+++.++.++.. ++..+.
T Consensus 2 ~v~nlp---~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~ 65 (70)
T PF00076_consen 2 YVGNLP---PDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKIN 65 (70)
T ss_dssp EEESET---TTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred EEcCCC---CcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEEC
Confidence 356664 2224567889999999997776544 237788999999999974 444433
No 36
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=68.18 E-value=13 Score=22.69 Aligned_cols=43 Identities=23% Similarity=0.420 Sum_probs=29.4
Q ss_pred HHHHHHhCCeEEEeeCC----eeEEEeCCHHHHHHHHHh-cCccccCC
Q 022341 59 SDLAKKYGDVLLLRMGQ----RNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (298)
Q Consensus 59 ~~~~~~yG~i~~~~~g~----~~~vvi~~p~~i~evl~~-~~~~f~~r 101 (298)
.++..+||+|-.+.+.. .-.|-..+++.++.+... ++..|.+|
T Consensus 2 ~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~ 49 (56)
T PF13893_consen 2 YKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGR 49 (56)
T ss_dssp HHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred hHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 45678999999888644 346677899999998864 44444443
No 37
>PLN03120 nucleic acid binding protein; Provisional
Probab=66.80 E-value=27 Score=29.35 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=45.7
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeC------CeeEEEeCCHHHHHHHHHhcCccccCCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG------QRNLVVVSSPDHAKEVLHTQGVEFGSRTR 103 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g------~~~~vvi~~p~~i~evl~~~~~~f~~r~~ 103 (298)
++||+..- -....+.++...||+|-.+++. +.-.|...+++.++.++.-++..+.+|+.
T Consensus 8 fVgNLs~~---tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V 72 (260)
T PLN03120 8 KVSNVSLK---ATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQSV 72 (260)
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceE
Confidence 46777422 2456788999999999998873 45688889999999999878888877773
No 38
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=65.91 E-value=23 Score=21.62 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=17.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 022341 1 MDLLLLEKTLLALFAAVVVAITVSKLRGKRFKLPPGP 37 (298)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ppGP 37 (298)
|+.+.+...+-.++++..+..+++-.++.+...+-+|
T Consensus 1 M~il~~LIpiSl~l~~~~l~~f~Wavk~GQfDDle~~ 37 (51)
T TIGR00847 1 MEILTILIPISLLLGGVGLVAFLWSLKSGQYDDLKGA 37 (51)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCccH
Confidence 6666554444333434444445455455455554454
No 39
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=62.20 E-value=11 Score=27.68 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhhcCCC
Q 022341 12 ALFAAVVVAITVSKLRGKR 30 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~ 30 (298)
.+.++++++|+++|++++.
T Consensus 77 vIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 77 VIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 3333444556666665543
No 40
>smart00362 RRM_2 RNA recognition motif.
Probab=61.10 E-value=36 Score=20.91 Aligned_cols=40 Identities=18% Similarity=0.378 Sum_probs=29.3
Q ss_pred chHHHHHHHHHhCCeEEEeeCC-------eeEEEeCCHHHHHHHHHh
Q 022341 54 NHRNLSDLAKKYGDVLLLRMGQ-------RNLVVVSSPDHAKEVLHT 93 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g~-------~~~vvi~~p~~i~evl~~ 93 (298)
....+.++.++||++-.+.+-. .-.|-..+++.++.++..
T Consensus 12 ~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~ 58 (72)
T smart00362 12 TEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEA 58 (72)
T ss_pred CHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHH
Confidence 3456778888999987765543 336777899999998854
No 41
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=58.78 E-value=35 Score=25.88 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=41.8
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++|||..- -....+.++.++||+|..+.+- +.-.|-..++++++.++.. ++..+.+|+
T Consensus 37 lfVgnL~~~---~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~ 105 (144)
T PLN03134 37 LFIGGLSWG---TDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRH 105 (144)
T ss_pred EEEeCCCCC---CCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 356777532 2456788999999999887763 3457888999999999975 444555554
No 42
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=54.85 E-value=18 Score=26.96 Aligned_cols=7 Identities=29% Similarity=0.980 Sum_probs=3.0
Q ss_pred ccccccc
Q 022341 41 PVFGNWL 47 (298)
Q Consensus 41 PiiGnl~ 47 (298)
|+-|+-+
T Consensus 33 P~~gt~w 39 (130)
T PF12273_consen 33 PIYGTRW 39 (130)
T ss_pred CcCCcee
Confidence 3444443
No 43
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=53.66 E-value=24 Score=21.97 Aligned_cols=37 Identities=19% Similarity=0.318 Sum_probs=16.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 022341 1 MDLLLLEKTLLALFAAVVVAITVSKLRGKRFKLPPGP 37 (298)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ppGP 37 (298)
|..+.+...+..+++++.++.+++-.+..+.....||
T Consensus 1 m~~l~~Lipvsi~l~~v~l~~flWavksgQyDDl~g~ 37 (58)
T COG3197 1 MEILYILIPVSILLGAVGLGAFLWAVKSGQYDDLDGP 37 (58)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHhcccCCccccccc
Confidence 4445333333333334444445554444444444454
No 44
>cd01646 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.
Probab=52.26 E-value=31 Score=26.42 Aligned_cols=57 Identities=23% Similarity=0.281 Sum_probs=40.5
Q ss_pred CCCCCCCCCCCCccccccccCCCCcchHHHHHHHHH-hCCeEEEeeCCeeEEEeCCHHHHHHHHH
Q 022341 29 KRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKK-YGDVLLLRMGQRNLVVVSSPDHAKEVLH 92 (298)
Q Consensus 29 ~~~~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~-yG~i~~~~~g~~~~vvi~~p~~i~evl~ 92 (298)
....+|.|++-.|+++|+... .+.++.++ .+.+..++..-.-+++..+.+.+++++.
T Consensus 50 ~~~GlpqG~~lS~~L~~~~l~-------~~d~~i~~~~~~~~~~RY~DD~~i~~~~~~~~~~~~~ 107 (158)
T cd01646 50 QTNGLPIGPLTSRFLANIYLN-------DVDHELKSKLKGVDYVRYVDDIRIFADSKEEAEEILE 107 (158)
T ss_pred CCceEccCcchHHHHHHHHHH-------HHHHHHHhccCCceEEEecCcEEEEcCCHHHHHHHHH
Confidence 345688899889999998632 23444333 6778888888888888888887766663
No 45
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=51.15 E-value=44 Score=29.30 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=43.7
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCee---------EEEeCCHHHHHHHHHh-cCccccCCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRN---------LVVVSSPDHAKEVLHT-QGVEFGSRTR 103 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~---------~vvi~~p~~i~evl~~-~~~~f~~r~~ 103 (298)
-++|||..- -....+.++..+||+|-.+++...+ .|...+++.+..++.. ++..+.+|+.
T Consensus 272 lfV~NL~~~---~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i 341 (352)
T TIGR01661 272 IFVYNLSPD---TDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVL 341 (352)
T ss_pred EEEeCCCCC---CCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 356887532 2446788889999999988875433 7888889999988865 6667776653
No 46
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=46.67 E-value=1.7e+02 Score=24.37 Aligned_cols=107 Identities=15% Similarity=0.286 Sum_probs=69.7
Q ss_pred HHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcC---ccccCCCCcchhhhhccCCCceEEecCChhHHHHhhh
Q 022341 56 RNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQG---VEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRI 132 (298)
Q Consensus 56 ~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~---~~f~~r~~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~ 132 (298)
....+..++++|=|.+..++.+.. -.|..+||.|...+ -..++.|....-+.+-..|.+-++..-++.--..|.+
T Consensus 50 ~~~~~~~~~~~pDf~i~isPN~a~--PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g~GYIivk~DpMIGArREF 127 (277)
T PRK00994 50 EVVKKMLEEWKPDFVIVISPNPAA--PGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQGLGYIIVKADPMIGARREF 127 (277)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCC--CCchHHHHHHHhcCCCEEEEcCCCccchHHHHHhcCCcEEEEecCccccchhhc
Confidence 345666688999999999988765 78999999997543 3455666544333333334444444445665666666
Q ss_pred hcc---cccchHHHHhh-----HHHHHHHHHHHHHHHhcC
Q 022341 133 MTV---PFFTNKVVQQQ-----RFNWEDEAARVVEDVKKD 164 (298)
Q Consensus 133 ~~~---~~~~~~~~~~~-----~~~~~~~~~~l~~~l~~~ 164 (298)
+-+ ..|+...++.+ ..+++++.+..++..++.
T Consensus 128 LDP~EMa~fNaD~~kVLa~tG~~RlvQ~elD~vi~~v~~G 167 (277)
T PRK00994 128 LDPVEMALFNADVLKVLAGTGAVRLVQEELDKVIDQVKEG 167 (277)
T ss_pred cCHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhcC
Confidence 532 24777666543 245778899999988764
No 47
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=46.56 E-value=1.6e+02 Score=23.98 Aligned_cols=123 Identities=15% Similarity=0.246 Sum_probs=78.2
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcC---ccccCCCCcchhhhhccCCCc
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQG---VEFGSRTRNVVFDIFTGKGQD 116 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~---~~f~~r~~~~~~~~~~~~~~~ 116 (298)
.-++|+--.+.++-......+..+++.+=|-++.++.|.. -.|..+||+|.... -..++-|....-+.+-..|.+
T Consensus 34 vrVvgsgaKM~Pe~veaav~~~~e~~~pDfvi~isPNpaa--PGP~kARE~l~~s~~PaiiigDaPg~~vkdeleeqGlG 111 (277)
T COG1927 34 VRVVGSGAKMDPECVEAAVTEMLEEFNPDFVIYISPNPAA--PGPKKAREILSDSDVPAIIIGDAPGLKVKDELEEQGLG 111 (277)
T ss_pred EEEeccccccChHHHHHHHHHHHHhcCCCEEEEeCCCCCC--CCchHHHHHHhhcCCCEEEecCCccchhHHHHHhcCCe
Confidence 3445555444332223456678888998899999988876 78999999997532 244555644444444445555
Q ss_pred eEEecCChhHHHHhhhhcc---cccchHHHHhh-----HHHHHHHHHHHHHHHhcC
Q 022341 117 MVFTVYGEHWRKMRRIMTV---PFFTNKVVQQQ-----RFNWEDEAARVVEDVKKD 164 (298)
Q Consensus 117 ~~~~~~g~~Wk~~Rk~~~~---~~~~~~~~~~~-----~~~~~~~~~~l~~~l~~~ 164 (298)
-++...++.--..|.++-+ +.|+....+.+ ..+.+++.+.+++..+..
T Consensus 112 YIivk~DpmiGArREFLDPvEMA~fNaDv~kVLa~tGa~R~vQeaiD~~ie~vk~g 167 (277)
T COG1927 112 YIIVKADPMIGARREFLDPVEMASFNADVMKVLAATGAFRLVQEAIDKVIEDVKEG 167 (277)
T ss_pred EEEecCCcccchhhhhcCHHHHHhhhhHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Confidence 5555556776666776532 24666655432 235677889999988765
No 48
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=45.13 E-value=79 Score=22.70 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=9.0
Q ss_pred CCccccccccCC
Q 022341 39 PVPVFGNWLQVG 50 (298)
Q Consensus 39 ~~PiiGnl~~l~ 50 (298)
.-|+-|||....
T Consensus 45 ~~p~YgNL~~~q 56 (107)
T PF15330_consen 45 DDPCYGNLELQQ 56 (107)
T ss_pred CCcccccccccc
Confidence 478889997653
No 49
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=44.53 E-value=32 Score=21.78 Aligned_cols=42 Identities=24% Similarity=0.342 Sum_probs=31.0
Q ss_pred chHHHHHHHHHhCCeEEEeeCC--------eeEEEeCCHHHHHHHHHhcC
Q 022341 54 NHRNLSDLAKKYGDVLLLRMGQ--------RNLVVVSSPDHAKEVLHTQG 95 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g~--------~~~vvi~~p~~i~evl~~~~ 95 (298)
....+.++...||+|-.+.+.. .-.|-..+++.+++++....
T Consensus 11 ~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 11 TEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp -HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCC
Confidence 3456778888899887776542 23778899999999997654
No 50
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=44.10 E-value=64 Score=23.81 Aligned_cols=37 Identities=27% Similarity=0.486 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHh
Q 022341 55 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHT 93 (298)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~ 93 (298)
-..+.+|.++||.+-- ..+...+...|++.++++...
T Consensus 77 ~~~i~~w~~~~g~v~l--~~~~~~l~~~d~~~l~~l~~~ 113 (129)
T PF13625_consen 77 EQSIEDWARRYGRVRL--YKGAYLLECDDPELLDELLAD 113 (129)
T ss_pred HHHHHHHHHhcCCEEE--ecCeEEEEECCHHHHHHHHhC
Confidence 3578999999998765 235778899999999999864
No 51
>smart00360 RRM RNA recognition motif.
Probab=43.44 E-value=74 Score=19.25 Aligned_cols=39 Identities=23% Similarity=0.395 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh
Q 022341 55 HRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT 93 (298)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~ 93 (298)
...+.++.++||++..+++-. .-.|-..+++.++.++..
T Consensus 10 ~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~ 57 (71)
T smart00360 10 EEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEA 57 (71)
T ss_pred HHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHH
Confidence 456778888999998777543 235667889999888754
No 52
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=42.50 E-value=81 Score=21.26 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=11.2
Q ss_pred ChhH-HHHHHHHHHHHHHHHHHHHH
Q 022341 1 MDLL-LLEKTLLALFAAVVVAITVS 24 (298)
Q Consensus 1 ~~~~-~~~~~~~~~~~~~~~~~~~~ 24 (298)
|.++ .+.+.++...+|+++|...+
T Consensus 1 Mgl~Da~~~~V~V~IVclliya~YR 25 (92)
T PHA02681 1 MGLLDALLTVIVISIVCYIVIMMYR 25 (92)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5665 33343444444555554444
No 53
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=41.20 E-value=1.5e+02 Score=27.48 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=28.0
Q ss_pred HhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 64 KYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 64 ~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
+||.|++-.+-++.+-|=-=|..=++-+.+...+|+.-+
T Consensus 222 rfg~V~KaqL~~~~VAVKifp~~~kqs~~~Ek~Iy~lp~ 260 (534)
T KOG3653|consen 222 RFGCVWKAQLDNRLVAVKIFPEQEKQSFQNEKNIYSLPG 260 (534)
T ss_pred ccceeehhhccCceeEEEecCHHHHHHHHhHHHHHhccC
Confidence 689999988877776655555555777877777777543
No 54
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=37.74 E-value=41 Score=27.75 Aligned_cols=60 Identities=12% Similarity=0.192 Sum_probs=41.7
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEee------C---CeeEEEeCCHHHHHHHHHhcCccccCCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRM------G---QRNLVVVSSPDHAKEVLHTQGVEFGSRTR 103 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~------g---~~~~vvi~~p~~i~evl~~~~~~f~~r~~ 103 (298)
-++|.|.|-. ..+.+.+..++||+|.---+ | +.-.|-..|++.+.....+......+|..
T Consensus 15 ifVggL~w~T---~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~a 83 (247)
T KOG0149|consen 15 IFVGGLAWET---HKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKA 83 (247)
T ss_pred EEEcCccccc---chHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCccccccc
Confidence 3567776553 23678899999999864321 1 23467778999999999887777766653
No 55
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=36.99 E-value=54 Score=25.81 Aligned_cols=48 Identities=21% Similarity=0.319 Sum_probs=33.7
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeCC----eeEEEeCCHHHHHHHHH
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ----RNLVVVSSPDHAKEVLH 92 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~----~~~vvi~~p~~i~evl~ 92 (298)
.+|||.. .....-+.....+||++..+|+.- .-.|-.-||.+|.++..
T Consensus 14 YVGnL~~---~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr 65 (195)
T KOG0107|consen 14 YVGNLGS---RATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVR 65 (195)
T ss_pred EeccCCC---CcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHh
Confidence 5788842 213345777788899999999753 34777788888777663
No 56
>PF15050 SCIMP: SCIMP protein
Probab=29.65 E-value=1e+02 Score=22.44 Aligned_cols=20 Identities=5% Similarity=0.155 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022341 5 LLEKTLLALFAAVVVAITVS 24 (298)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (298)
+...+++++.+++++|-+++
T Consensus 13 AVaII~vS~~lglIlyCvcR 32 (133)
T PF15050_consen 13 AVAIILVSVVLGLILYCVCR 32 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555554444
No 57
>PRK02302 hypothetical protein; Provisional
Probab=29.30 E-value=1.3e+02 Score=20.76 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=23.9
Q ss_pred HHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHh
Q 022341 62 AKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHT 93 (298)
Q Consensus 62 ~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~ 93 (298)
-++||+|....=-..-+|+=.|-+.++++..+
T Consensus 23 LrkfG~I~Y~Skk~kYvvlYvn~~~~e~~~~k 54 (89)
T PRK02302 23 LSKYGDIVYHSKRSRYLVLYVNKEDVEQKLEE 54 (89)
T ss_pred HhhcCcEEEEeccccEEEEEECHHHHHHHHHH
Confidence 35799998765555566666778888998876
No 58
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=27.57 E-value=2.4e+02 Score=25.02 Aligned_cols=49 Identities=16% Similarity=0.277 Sum_probs=35.2
Q ss_pred chHHHHHHHHHhCCeEEEeeC---------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 54 NHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g---------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
....+.++.++||+|..+++- +.-.|-..+++.++.++.. ++..+.+++
T Consensus 120 te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~ 178 (346)
T TIGR01659 120 TDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKR 178 (346)
T ss_pred CHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCce
Confidence 345788889999999877763 2356777899999999964 444555554
No 59
>PRK02886 hypothetical protein; Provisional
Probab=27.29 E-value=1.5e+02 Score=20.34 Aligned_cols=32 Identities=13% Similarity=0.368 Sum_probs=23.9
Q ss_pred HHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHh
Q 022341 62 AKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHT 93 (298)
Q Consensus 62 ~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~ 93 (298)
-++||+|..+.=-..-+|+=.|-+.+.++..+
T Consensus 21 LrkyG~I~Y~Skr~kYvvlYvn~~~~e~~~~k 52 (87)
T PRK02886 21 LRKFGNVHYVSKRLKYAVLYCDMEQVEDIMNK 52 (87)
T ss_pred HhhcCcEEEEeccccEEEEEECHHHHHHHHHH
Confidence 35799998765555566666778888998865
No 60
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=25.95 E-value=1.6e+02 Score=17.84 Aligned_cols=41 Identities=22% Similarity=0.364 Sum_probs=30.5
Q ss_pred chHHHHHHHHHhCCeEEEeeCC--------eeEEEeCCHHHHHHHHHhc
Q 022341 54 NHRNLSDLAKKYGDVLLLRMGQ--------RNLVVVSSPDHAKEVLHTQ 94 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g~--------~~~vvi~~p~~i~evl~~~ 94 (298)
....+.++.++||++..+.+-. .-.|-..+++.++.++...
T Consensus 12 ~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~ 60 (74)
T cd00590 12 TEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEAL 60 (74)
T ss_pred CHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 3456788888899998877653 2356678999999998654
No 61
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=25.50 E-value=2.4e+02 Score=26.71 Aligned_cols=59 Identities=17% Similarity=0.303 Sum_probs=41.1
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeC--------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG--------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++||+..- -....+.++..+||.|..+++. +.-.|...+++.+..++.. ++..+.+|+
T Consensus 288 l~V~nl~~~---~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~ 355 (562)
T TIGR01628 288 LYVKNLDDT---VTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKP 355 (562)
T ss_pred EEEeCCCCc---cCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCce
Confidence 456777432 2346788889999999877752 3458889999999999965 444444444
No 62
>PF15205 PLAC9: Placenta-specific protein 9
Probab=25.35 E-value=44 Score=21.50 Aligned_cols=8 Identities=63% Similarity=1.655 Sum_probs=6.5
Q ss_pred CCCCCCCC
Q 022341 31 FKLPPGPL 38 (298)
Q Consensus 31 ~~~ppGP~ 38 (298)
+++||||.
T Consensus 57 wnlP~gp~ 64 (74)
T PF15205_consen 57 WNLPPGPF 64 (74)
T ss_pred ccCCCCCC
Confidence 58999984
No 63
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=25.13 E-value=1.3e+02 Score=20.51 Aligned_cols=36 Identities=22% Similarity=0.445 Sum_probs=28.5
Q ss_pred HHHHHHHhCCeEEEeeCCee-EEEeCCHHHHHHHHHh
Q 022341 58 LSDLAKKYGDVLLLRMGQRN-LVVVSSPDHAKEVLHT 93 (298)
Q Consensus 58 ~~~~~~~yG~i~~~~~g~~~-~vvi~~p~~i~evl~~ 93 (298)
+.++..-||.|+--|+.... .|.+.+.+.++.++..
T Consensus 25 I~qlFspfG~I~VsWi~dTSAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 25 IYQLFSPFGQIYVSWINDTSAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp HHHHCCCCCCEEEEEECTTEEEEEECCCHHHHHHHHH
T ss_pred HHHHhccCCcEEEEEEcCCcEEEEeecHHHHHHHHHH
Confidence 55666678999999998654 6788999999988753
No 64
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=25.09 E-value=2e+02 Score=25.57 Aligned_cols=50 Identities=16% Similarity=0.273 Sum_probs=36.9
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT 93 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~ 93 (298)
-+++||.. +-....+.++..+||.|..+.+-. .-.|-..+.+.+++++..
T Consensus 196 lfV~nLp~---~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 254 (346)
T TIGR01659 196 LYVTNLPR---TITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISA 254 (346)
T ss_pred eEEeCCCC---cccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 45677743 224567889999999998776542 237888899999999975
No 65
>PLN03121 nucleic acid binding protein; Provisional
Probab=24.59 E-value=3.4e+02 Score=22.74 Aligned_cols=58 Identities=9% Similarity=0.090 Sum_probs=44.6
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeC------CeeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG------QRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g------~~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
++||+.. +-....+.++...||+|-.+++- ..-.|-..|++.++.++.-++..+-+++
T Consensus 9 ~V~NLS~---~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~ 72 (243)
T PLN03121 9 EVTNLSP---KATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVLLSGATIVDQR 72 (243)
T ss_pred EEecCCC---CCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCce
Confidence 4577742 22456788999999999888763 3567889999999999988888777776
No 66
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=24.55 E-value=2.4e+02 Score=26.71 Aligned_cols=58 Identities=28% Similarity=0.393 Sum_probs=40.9
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeC---------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
++|||. .+-....+.++..+||+|..+++. +.-.|...++++++.++.+ +...+.+++
T Consensus 4 ~VgnLp---~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~ 71 (562)
T TIGR01628 4 YVGDLD---PDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKP 71 (562)
T ss_pred EEeCCC---CCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCee
Confidence 467774 222345678888999999888873 2457889999999999976 334355555
No 67
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=24.34 E-value=2.4e+02 Score=25.82 Aligned_cols=59 Identities=15% Similarity=0.068 Sum_probs=43.5
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---------CeeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
-++|||.. +-....+.++..+||+|-.+++. +.-.|-..+++.++.++.-++..+.+++
T Consensus 92 l~V~nlp~---~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~ 159 (457)
T TIGR01622 92 VFVLQLAL---KARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRP 159 (457)
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCee
Confidence 35677742 22345688889999999887763 2458888999999999987777666665
No 68
>COG3924 Predicted membrane protein [Function unknown]
Probab=22.83 E-value=1.6e+02 Score=19.32 Aligned_cols=9 Identities=33% Similarity=0.763 Sum_probs=7.3
Q ss_pred CCCCCCccc
Q 022341 35 PGPLPVPVF 43 (298)
Q Consensus 35 pGP~~~Pii 43 (298)
||+.|.|..
T Consensus 37 ~G~~gfP~W 45 (80)
T COG3924 37 PGFTGFPLW 45 (80)
T ss_pred CCCCCChHH
Confidence 899888864
No 69
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=22.52 E-value=3.4e+02 Score=25.20 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=41.7
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeC----CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG----QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g----~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
++|||..- .-....+.++..+||+|-.+++. +.-.|-..+++.|..++.. ++..+.+++
T Consensus 279 ~v~nL~~~--~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~ 342 (481)
T TIGR01649 279 MVSGLHQE--KVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKP 342 (481)
T ss_pred EEeCCCCC--CCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCce
Confidence 45666421 11346788999999999998873 4568888999999999964 455555554
No 70
>cd01651 RT_G2_intron RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with both gag-like and pol-like genes. This subfamily of proteins appears to have captured the RT sequences from transposable elements, which lack long terminal repeats (LTRs).
Probab=22.41 E-value=2e+02 Score=22.97 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=37.6
Q ss_pred CCCCCCCCCCccccccccCCCCcchHHHHHHHH--------HhCCeEEEeeCCeeEEEeCCHHHHHHHHH
Q 022341 31 FKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAK--------KYGDVLLLRMGQRNLVVVSSPDHAKEVLH 92 (298)
Q Consensus 31 ~~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~--------~yG~i~~~~~g~~~~vvi~~p~~i~evl~ 92 (298)
..+|.|.+-.|++.|+..-. .-..+.+..+ +.+++..++....-++++.+++.+++++.
T Consensus 125 ~GlpqG~~lSp~L~~~~l~~---ld~~l~~~~~~~~~~~~~~~~~~~~~rY~DD~~i~~~~~~~~~~~~~ 191 (226)
T cd01651 125 KGTPQGGVISPLLANIYLHE---LDKFVEEKLKEYYDTSDPKFRRLRYVRYADDFVIGVRGPKEAEEIKE 191 (226)
T ss_pred CCcCCCccHHHHHHHHHHHH---HHHHHHHhhhhcccccccccCceEEEEecCceEEecCCHHHHHHHHH
Confidence 45777777778888775221 1122333222 23668888888888999999987766653
No 71
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=21.34 E-value=3.1e+02 Score=26.55 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=42.0
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++||+.. +-....+.++..+||+|-.+++. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 110 LfVGnLp~---~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~ 178 (612)
T TIGR01645 110 VYVGSISF---ELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRN 178 (612)
T ss_pred EEEcCCCC---CCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecce
Confidence 36788743 22446788888999999887762 3457888999999999864 445555554
No 72
>cd01648 TERT TERT: Telomerase reverse transcriptase (TERT). Telomerase is a ribonucleoprotein (RNP) that synthesizes telomeric DNA repeats. The telomerase RNA subunit provides the template for synthesis of these repeats. The catalytic subunit of RNP is known as telomerase reverse transcriptase (TERT). The reverse transcriptase (RT) domain is located in the C-terminal region of the TERT polypeptide. Single amino acid substitutions in this region lead to telomere shortening and senescence. Telomerase is an enzyme that, in certain cells, maintains the physical ends of chromosomes (telomeres) during replication. In somatic cells, replication of the lagging strand requires the continual presence of an RNA primer approximately 200 nucleotides upstream, which is complementary to the template strand. Since there is a region of DNA less than 200 base pairs from the end of the chromosome where this is not possible, the chromosome is continually shortened. However, a surplus of repetitive DNA at
Probab=21.06 E-value=2.6e+02 Score=20.08 Aligned_cols=56 Identities=23% Similarity=0.310 Sum_probs=32.1
Q ss_pred CCCCCCCCCCCccccccccCCCCcchHHHH-HHHHH----hCCeEEEeeCCeeEEEeCCHHHHHHHHH
Q 022341 30 RFKLPPGPLPVPVFGNWLQVGDDLNHRNLS-DLAKK----YGDVLLLRMGQRNLVVVSSPDHAKEVLH 92 (298)
Q Consensus 30 ~~~~ppGP~~~PiiGnl~~l~~~~~~~~~~-~~~~~----yG~i~~~~~g~~~~vvi~~p~~i~evl~ 92 (298)
...+|.|++-.|++.|+.. ..+. .+.+. -++...++.--.-.++..+.+.+++++.
T Consensus 17 ~~GlpQG~~lSp~L~nl~l-------~~l~~~~~~~~~~~~~~~~~~rYaDD~li~~~~~~~~~~~~~ 77 (119)
T cd01648 17 KVGIPQGSPLSSLLCSLYY-------ADLENKYLSFLDVIDKDSLLLRLVDDFLLITTSLDKAIKFLN 77 (119)
T ss_pred cCcccCCcchHHHHHHHHH-------HHHHHHHHhhcccCCCCceEEEEeCcEEEEeCCHHHHHHHHH
Confidence 3457889888898888742 1122 22211 1344445555555566666777777664
Done!