Query 022341
Match_columns 298
No_of_seqs 125 out of 1224
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 03:55:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022341.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022341hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swz_A Steroid 17-alpha-hydrox 100.0 9.4E-33 3.2E-37 253.3 21.5 261 29-298 5-288 (494)
2 3e6i_A CYPIIE1, P450-J, cytoch 100.0 2.9E-30 1E-34 235.4 19.8 260 28-298 6-282 (476)
3 3tbg_A Cytochrome P450 2D6; mo 100.0 3.7E-30 1.3E-34 234.8 18.9 264 28-298 6-287 (479)
4 3s79_A Cytochrome P450 19A1; o 100.0 5.8E-30 2E-34 235.1 17.3 251 31-298 44-310 (503)
5 3pm0_A Cypib1, cytochrome P450 100.0 7.9E-30 2.7E-34 234.3 18.1 260 30-298 7-294 (507)
6 3qz1_A Steroid 21-hydroxylase; 100.0 1.3E-30 4.6E-35 238.9 11.6 253 27-298 24-294 (496)
7 3nxu_A Cytochrome P450 3A4; al 100.0 9E-30 3.1E-34 232.8 14.6 254 33-298 15-287 (485)
8 1r9o_A Cytochrome P450 2C9; mo 100.0 6.8E-29 2.3E-33 226.7 18.5 264 26-298 5-284 (477)
9 3czh_A Cytochrome P450 2R1; vi 100.0 3E-28 1E-32 222.8 19.1 261 30-298 10-288 (481)
10 3k9v_A 1,25-dihydroxyvitamin D 100.0 5.4E-28 1.9E-32 220.6 20.7 258 29-298 21-298 (482)
11 1po5_A Cytochrome P450 2B4; ox 100.0 1.2E-28 4.1E-33 225.0 16.2 259 28-298 6-283 (476)
12 2fdv_A Cytochrome P450 2A6; CY 100.0 3E-28 1E-32 222.4 18.4 261 29-298 7-283 (476)
13 2hi4_A Cytochrome P450 1A2; CY 100.0 2.5E-28 8.4E-33 224.1 17.6 257 33-298 17-297 (495)
14 3gw9_A Sterol 14alpha-demethyl 100.0 3E-28 1E-32 220.5 15.3 251 32-298 3-268 (450)
15 3ld6_A Lanosterol 14-alpha dem 99.9 4.3E-28 1.5E-32 220.5 12.1 248 32-298 11-267 (461)
16 2ij2_A Cytochrome P450 BM3; mo 99.9 1.5E-25 5.2E-30 204.2 22.2 252 32-298 3-268 (470)
17 3i3k_A Lanosterol 14-alpha dem 99.9 8.6E-27 3E-31 211.8 12.6 251 28-298 7-267 (461)
18 3n9y_A Cholesterol SIDE-chain 99.9 1.4E-25 5E-30 205.0 18.2 261 29-298 6-290 (487)
19 2cib_A Cytochrome P450 51; hem 99.9 3.5E-25 1.2E-29 201.0 19.9 243 32-298 4-260 (455)
20 2ve3_A Putative cytochrome P45 99.9 1.3E-24 4.5E-29 196.7 17.2 242 29-298 9-258 (444)
21 3dbg_A Putative cytochrome P45 99.9 5.2E-25 1.8E-29 200.5 11.5 245 31-298 22-278 (467)
22 3v8d_A Cholesterol 7-alpha-mon 99.9 5.6E-25 1.9E-29 201.4 9.2 256 28-298 9-272 (491)
23 2cd8_A Cytochrome P450 monooxy 99.9 7.1E-23 2.4E-27 184.9 16.5 229 31-298 25-267 (436)
24 1jfb_A Nitric-oxide reductase 99.9 1.3E-21 4.6E-26 174.8 19.9 233 33-298 2-244 (404)
25 3dax_A Cytochrome P450 7A1; ch 99.9 1.1E-22 3.6E-27 186.1 11.4 255 30-298 11-272 (491)
26 3mdm_A Cholesterol 24-hydroxyl 99.9 4.1E-21 1.4E-25 174.0 20.1 231 53-298 11-258 (456)
27 1cpt_A Cytochrome P450-TERP; o 99.9 2.8E-21 9.5E-26 174.0 18.0 245 30-298 4-271 (428)
28 3b6h_A Prostacyclin synthase; 99.9 1.3E-21 4.3E-26 179.4 15.0 255 27-298 13-277 (498)
29 1n97_A CYP175A1; electron tran 99.9 4.3E-22 1.5E-26 177.1 7.8 147 35-196 2-150 (389)
30 1ued_A P450 OXYC, P450 monooxy 99.9 3.7E-20 1.3E-24 165.6 19.3 225 30-298 8-249 (406)
31 3b98_A Prostaglandin I2 syntha 99.8 4.2E-21 1.4E-25 174.8 10.2 244 28-298 14-268 (475)
32 2zbx_A Cytochrome P450-SU1; be 99.8 2.7E-19 9.2E-24 160.3 20.3 229 32-298 5-248 (412)
33 3ivy_A Cytochrome P450 CYP125; 99.8 1.7E-19 5.9E-24 162.6 17.8 236 29-298 15-272 (433)
34 2zwu_A Camphor 5-monooxygenase 99.8 7.4E-19 2.5E-23 157.5 17.8 231 28-298 7-253 (415)
35 1izo_A P450bsbeta, cytochrome 99.8 1.8E-18 6E-23 155.1 19.5 228 37-297 5-245 (417)
36 3awm_A Fatty acid alpha-hydrox 99.8 3.2E-18 1.1E-22 153.3 20.2 228 34-297 4-244 (415)
37 3oo3_A OXY protein; cytochrome 99.8 1.6E-18 5.5E-23 153.7 17.3 209 54-298 14-230 (384)
38 3ejb_B Biotin biosynthesis cyt 99.8 4.7E-18 1.6E-22 151.7 20.3 213 54-298 15-238 (404)
39 1s1f_A Putative cytochrome P45 99.8 3.3E-18 1.1E-22 152.9 19.2 226 32-298 8-245 (406)
40 3aba_A Cytochrome P450; oxidor 99.8 9.8E-18 3.3E-22 149.7 18.5 208 54-298 21-241 (403)
41 3abb_A CYP105D6, cytochrome P4 99.8 8E-18 2.7E-22 150.5 17.6 208 54-298 26-247 (408)
42 3dsk_A Cytochrome P450 74A, ch 99.8 5.7E-19 2E-23 161.6 10.2 163 29-198 25-206 (495)
43 3tkt_A Cytochrome P450; aromat 99.8 8.2E-18 2.8E-22 152.3 17.5 224 54-298 47-293 (450)
44 2wm5_A CYP124, putative cytoch 99.8 1.9E-17 6.4E-22 149.3 18.3 217 54-298 46-278 (435)
45 2jjn_A Cytochrome P450 113A1; 99.8 1.4E-17 4.9E-22 149.0 15.8 209 54-298 30-245 (411)
46 2z3t_A Cytochrome P450; monoxy 99.8 6.9E-17 2.3E-21 145.2 20.2 213 54-298 22-258 (425)
47 3tyw_A Putative cytochrome P45 99.8 3.2E-17 1.1E-21 147.0 18.0 210 54-298 31-253 (417)
48 4fb2_A P450CIN; heme, monooxyg 99.8 3.8E-18 1.3E-22 152.1 11.7 208 54-298 21-236 (398)
49 1odo_A Putative cytochrome P45 99.8 3.6E-17 1.2E-21 146.2 18.0 211 54-298 17-246 (408)
50 3lxh_A Cytochrome P450; heme, 99.8 2.9E-17 1E-21 147.4 17.4 215 54-298 40-260 (421)
51 3a4g_A Vitamin D hydroxylase; 99.8 1E-16 3.5E-21 143.4 20.7 207 54-298 22-240 (411)
52 3r9b_A Cytochrome P450 164A2; 99.7 2.9E-17 9.9E-22 147.2 16.4 216 54-298 31-260 (418)
53 2z36_A MOXA, cytochrome P450 t 99.7 3.3E-17 1.1E-21 146.7 16.6 210 54-298 24-249 (413)
54 1q5d_A P450 epoxidase; cytochr 99.7 1.9E-17 6.4E-22 148.6 15.0 213 54-298 28-258 (419)
55 2xkr_A CYP142, putative cytoch 99.7 9.8E-17 3.3E-21 142.9 18.0 209 54-298 20-234 (398)
56 1z8o_A 6-deoxyerythronolide B 99.7 1.1E-16 3.6E-21 143.0 18.2 207 54-298 16-245 (404)
57 2y5n_A MYCG, P-450-like protei 99.7 8.1E-17 2.8E-21 144.4 17.2 209 54-298 39-258 (417)
58 1gwi_A CYP154C1, cytochrome P4 99.7 1.5E-16 5.1E-21 142.4 18.0 209 54-298 19-246 (411)
59 2uuq_A CYP130, cytochrome P450 99.7 8.7E-17 3E-21 144.0 15.3 209 54-298 27-254 (414)
60 3dan_A Cytochrome P450 74A2; A 99.7 3.4E-17 1.2E-21 148.9 11.5 163 30-197 7-187 (473)
61 3oft_A Cytochrome P450, CYP101 99.7 1.8E-16 6E-21 141.1 15.6 208 54-298 26-238 (396)
62 3buj_A CALO2; heme, iron, meta 99.7 4.1E-16 1.4E-20 138.9 17.0 211 54-298 15-237 (397)
63 3nc3_A Cytochrome P450 CYPX; c 99.7 9.6E-17 3.3E-21 144.9 11.7 213 54-298 55-273 (441)
64 3mgx_A Putative P450 monooxyge 99.7 4E-16 1.4E-20 139.7 15.0 210 54-298 39-258 (415)
65 2xbk_A PIMD protein; epoxidati 99.7 2.2E-15 7.5E-20 134.5 19.4 204 54-298 28-245 (404)
66 1lfk_A OXYB, P450 monooxygenas 99.7 5.1E-16 1.8E-20 138.3 14.9 204 58-298 19-240 (398)
67 2dkk_A Cytochrome P450; CYP158 99.7 1.4E-15 4.8E-20 136.1 16.6 208 53-298 28-248 (411)
68 3rwl_A Cytochrome P450 alkane 99.7 4E-15 1.4E-19 133.7 18.9 216 54-298 40-269 (426)
69 3b4x_A 367AA long hypothetical 99.7 1.3E-15 4.5E-20 134.2 13.8 198 55-298 2-214 (367)
70 1n40_A P450 MT2, cytochrome P4 99.6 1.2E-15 4E-20 135.9 9.9 206 54-298 18-237 (396)
71 1io7_A Cytochrome P450 CYP119; 99.6 1.2E-14 4.2E-19 128.0 16.3 200 55-298 2-213 (368)
72 3p3o_A Cytochrome P450; monoox 99.6 1.8E-15 6.2E-20 135.6 9.1 211 54-298 35-257 (416)
73 2rfb_A Cytochrome P450; heme, 99.6 7.4E-15 2.5E-19 128.2 11.1 188 63-298 2-192 (343)
74 2wiy_A XPLA-heme, cytochrome P 99.6 3.7E-14 1.3E-18 126.1 15.5 212 54-298 22-237 (394)
75 4dnj_A Putative cytochrome P45 99.4 5.2E-13 1.8E-17 119.3 11.5 230 38-298 18-255 (412)
76 4dxy_A Cytochrome P450, CYP101 99.2 2.1E-10 7.1E-15 102.6 15.9 215 54-298 39-259 (417)
77 2yjn_B Erycii, DTDP-4-keto-6-d 97.5 3.1E-07 1E-11 80.8 -10.2 129 33-196 35-180 (381)
78 2diu_A KIAA0430 protein; struc 91.6 0.54 1.8E-05 32.0 5.9 62 42-104 13-77 (96)
79 3lqv_A PRE-mRNA branch site pr 88.1 2.7 9.4E-05 29.1 7.9 65 33-100 3-74 (115)
80 1s79_A Lupus LA protein; RRM, 86.8 2.3 8E-05 29.1 6.7 60 40-102 13-80 (103)
81 1iqt_A AUF1, heterogeneous nuc 85.7 1.7 5.7E-05 27.4 5.1 58 42-102 3-69 (75)
82 2mss_A Protein (musashi1); RNA 82.6 3.3 0.00011 26.0 5.5 58 42-102 3-69 (75)
83 2dnz_A Probable RNA-binding pr 82.3 7.1 0.00024 25.7 7.4 62 39-103 6-77 (95)
84 4f25_A Polyadenylate-binding p 81.7 3.6 0.00012 28.6 5.9 59 41-102 8-74 (115)
85 2krb_A Eukaryotic translation 81.5 6.8 0.00023 25.0 6.9 60 42-101 5-75 (81)
86 4fxv_A ELAV-like protein 1; RN 80.3 2.6 8.7E-05 28.6 4.6 59 41-102 22-90 (99)
87 1whx_A Hypothetical protein ri 79.9 8.3 0.00028 26.5 7.3 60 41-103 13-76 (111)
88 2kxn_B Transformer-2 protein h 79.2 14 0.0005 26.1 9.3 61 39-102 47-117 (129)
89 3mdf_A Peptidyl-prolyl CIS-tra 78.4 8.6 0.00029 24.6 6.7 62 37-101 6-77 (85)
90 2kvi_A Nuclear polyadenylated 77.6 7.7 0.00026 25.7 6.4 61 40-102 12-74 (96)
91 3beg_B Splicing factor, argini 77.1 12 0.00041 25.8 7.5 59 41-102 19-80 (115)
92 2cqc_A Arginine/serine-rich sp 76.7 7.9 0.00027 25.4 6.2 63 36-101 13-85 (95)
93 2cq3_A RNA-binding protein 9; 76.2 12 0.00042 25.0 7.2 60 40-102 17-84 (103)
94 1p27_B RNA-binding protein 8A; 75.9 11 0.00036 25.4 6.9 59 41-102 26-94 (106)
95 3s7r_A Heterogeneous nuclear r 75.8 4.5 0.00015 26.2 4.7 60 39-101 12-80 (87)
96 2wbr_A GW182, gawky, LD47780P; 75.8 8.8 0.0003 25.6 5.9 53 38-93 7-62 (89)
97 2dgv_A HnRNP M, heterogeneous 75.6 12 0.00042 24.3 6.9 59 41-102 11-77 (92)
98 3ex7_B RNA-binding protein 8A; 75.5 12 0.00041 26.2 7.2 60 41-103 25-94 (126)
99 2do4_A Squamous cell carcinoma 74.8 15 0.00053 24.3 7.4 61 39-102 18-87 (100)
100 2hvz_A Splicing factor, argini 74.6 8.4 0.00029 25.7 6.0 58 42-102 4-66 (101)
101 4a8x_A RNA-binding protein wit 74.1 10 0.00036 24.3 6.2 58 42-102 8-76 (88)
102 1x5u_A Splicing factor 3B subu 73.9 17 0.00059 24.3 8.2 60 40-102 17-86 (105)
103 3ns6_A Eukaryotic translation 73.7 11 0.00037 25.3 6.3 63 40-102 8-84 (100)
104 2d9p_A Polyadenylate-binding p 73.5 15 0.00051 24.5 7.1 63 37-102 14-84 (103)
105 3md1_A Nuclear and cytoplasmic 73.1 7.2 0.00024 24.8 5.1 58 42-102 5-72 (83)
106 1why_A Hypothetical protein ri 72.9 17 0.00059 23.9 8.3 58 39-99 18-79 (97)
107 2dnq_A RNA-binding protein 4B; 72.6 17 0.00057 23.6 7.0 60 40-102 10-71 (90)
108 3s8s_A Histone-lysine N-methyl 72.5 4.7 0.00016 27.9 4.2 61 39-102 7-77 (110)
109 2xnq_A Nuclear polyadenylated 72.1 15 0.00051 24.4 6.7 59 41-101 25-85 (97)
110 2jvr_A Nucleolar protein 3; RN 72.1 6.9 0.00024 27.2 5.0 60 40-102 30-96 (111)
111 1whw_A Hypothetical protein ri 72.1 14 0.00049 24.4 6.7 60 40-102 10-79 (99)
112 2nlw_A Eukaryotic translation 71.8 16 0.00055 24.6 6.9 62 40-101 17-89 (105)
113 3s6e_A RNA-binding protein 39; 71.7 5.5 0.00019 27.9 4.4 70 33-102 2-84 (114)
114 2dnp_A RNA-binding protein 14; 71.4 18 0.00061 23.4 7.8 64 36-102 7-72 (90)
115 2dgs_A DAZ-associated protein 70.8 20 0.00068 23.7 7.9 60 40-102 12-80 (99)
116 2cpf_A RNA binding motif prote 70.8 14 0.00046 24.4 6.2 61 39-102 6-79 (98)
117 2a3j_A U1 small nuclear ribonu 70.7 14 0.00049 26.2 6.6 62 41-102 32-101 (127)
118 2e5h_A Zinc finger CCHC-type a 70.7 12 0.00042 24.4 6.0 59 39-100 17-85 (94)
119 2pe8_A Splicing factor 45; RRM 70.6 6.6 0.00022 26.9 4.6 68 35-102 5-85 (105)
120 1x4g_A Nucleolysin TIAR; struc 70.4 15 0.00052 24.9 6.6 60 40-102 27-90 (109)
121 1nu4_A U1A RNA binding domain; 70.0 14 0.00048 24.3 6.2 60 40-102 10-80 (97)
122 1oo0_B CG8781-PA, drosophila Y 69.7 16 0.00054 24.8 6.5 59 41-102 29-97 (110)
123 2div_A TRNA selenocysteine ass 69.6 12 0.00042 24.7 5.8 64 36-102 7-81 (99)
124 2i2y_A Fusion protein consists 69.5 29 0.00098 25.0 8.7 60 40-102 75-139 (150)
125 3bs9_A Nucleolysin TIA-1 isofo 69.4 7.1 0.00024 25.1 4.4 58 41-101 9-76 (87)
126 2dgx_A KIAA0430 protein; RRM d 69.1 16 0.00054 24.1 6.3 59 41-102 12-81 (96)
127 2dh8_A DAZ-associated protein 69.0 12 0.00041 25.1 5.7 60 40-102 18-86 (105)
128 2ytc_A PRE-mRNA-splicing facto 69.0 19 0.00066 22.8 7.5 59 40-101 14-77 (85)
129 1sjr_A Polypyrimidine tract-bi 68.8 28 0.00094 26.1 8.0 56 42-100 50-111 (164)
130 2la6_A RNA-binding protein FUS 68.7 16 0.00056 24.1 6.3 59 41-102 16-92 (99)
131 1rk8_A CG8781-PA, CG8781-PA pr 68.5 12 0.00041 27.8 6.1 59 41-102 75-143 (165)
132 3ucg_A Polyadenylate-binding p 67.9 9.6 0.00033 24.6 4.9 58 42-102 10-76 (89)
133 2dgu_A Heterogeneous nuclear r 67.8 20 0.00069 23.9 6.7 61 39-102 12-74 (103)
134 2jvo_A Nucleolar protein 3; nu 67.7 11 0.00038 25.7 5.3 59 41-102 34-94 (108)
135 1wi8_A EIF-4B, eukaryotic tran 67.5 12 0.00041 25.1 5.5 63 36-102 13-85 (104)
136 1wg5_A Heterogeneous nuclear r 67.2 15 0.00051 24.7 5.9 59 41-102 18-85 (104)
137 3d2w_A TAR DNA-binding protein 67.2 14 0.00049 24.1 5.6 51 37-90 10-64 (89)
138 2jwn_A Embryonic polyadenylate 67.0 9.4 0.00032 26.6 5.0 58 42-102 40-106 (124)
139 2cqd_A RNA-binding region cont 66.9 14 0.00048 25.3 5.8 60 40-102 19-87 (116)
140 2rs2_A Musashi-1, RNA-binding 66.7 12 0.00043 25.5 5.4 61 39-102 26-95 (109)
141 1uaw_A Mouse-musashi-1; RNP-ty 66.6 8.3 0.00028 24.1 4.2 58 42-102 4-70 (77)
142 1x5s_A Cold-inducible RNA-bind 66.3 25 0.00087 23.2 8.2 61 39-102 13-83 (102)
143 1x4c_A Splicing factor, argini 66.1 24 0.00083 23.8 6.9 57 41-100 18-77 (108)
144 2cph_A RNA binding motif prote 66.1 27 0.00091 23.3 8.8 60 40-102 17-88 (107)
145 1x5p_A Negative elongation fac 66.0 20 0.00069 23.6 6.3 58 40-102 17-78 (97)
146 2x1f_A MRNA 3'-END-processing 65.9 19 0.00064 23.7 6.1 59 41-102 5-73 (96)
147 2dhg_A TRNA selenocysteine ass 65.8 26 0.0009 23.2 8.3 65 35-102 6-81 (104)
148 2dgt_A RNA-binding protein 30; 65.8 19 0.00063 23.4 6.0 60 40-102 12-73 (92)
149 2jrs_A RNA-binding protein 39; 65.5 20 0.0007 24.3 6.4 59 41-102 29-97 (108)
150 1sjq_A Polypyrimidine tract-bi 64.9 27 0.00094 23.8 6.8 63 37-102 15-83 (105)
151 2cpi_A CCR4-NOT transcription 64.7 5.5 0.00019 27.4 3.3 61 39-102 16-92 (111)
152 1x4e_A RNA binding motif, sing 64.7 13 0.00045 23.7 5.0 62 37-101 4-75 (85)
153 2cqi_A Nucleolysin TIAR; RNA r 64.7 22 0.00076 23.6 6.4 60 40-102 17-84 (103)
154 2ywk_A Putative RNA-binding pr 64.7 13 0.00044 24.3 5.1 60 40-102 18-86 (95)
155 2kn4_A Immunoglobulin G-bindin 64.6 26 0.0009 25.4 7.3 60 40-102 72-141 (158)
156 3ulh_A THO complex subunit 4; 63.9 15 0.00051 24.7 5.4 59 41-102 32-99 (107)
157 2dis_A Unnamed protein product 63.8 30 0.001 23.2 7.1 59 41-102 11-83 (109)
158 1x4b_A Heterogeneous nuclear r 63.2 7.1 0.00024 26.9 3.6 59 41-102 30-97 (116)
159 1x4a_A Splicing factor, argini 63.2 31 0.0011 23.2 7.4 59 41-102 25-90 (109)
160 2cq4_A RNA binding motif prote 63.0 11 0.00036 25.9 4.5 57 42-101 29-94 (114)
161 1p1t_A Cleavage stimulation fa 62.7 18 0.00061 24.1 5.6 60 40-102 10-79 (104)
162 2hzc_A Splicing factor U2AF 65 62.6 23 0.00078 22.5 6.0 58 41-101 9-80 (87)
163 2dgo_A Cytotoxic granule-assoc 61.8 15 0.00051 25.1 5.1 60 40-102 17-86 (115)
164 2err_A Ataxin-2-binding protei 61.8 8.1 0.00028 26.4 3.7 59 41-102 32-98 (109)
165 3n9u_C Cleavage and polyadenyl 61.2 18 0.00062 26.6 5.8 58 42-102 59-128 (156)
166 2cqb_A Peptidyl-prolyl CIS-tra 61.1 18 0.0006 24.1 5.3 63 37-102 11-83 (102)
167 2qfj_A FBP-interacting repress 60.9 33 0.0011 26.2 7.6 58 42-102 32-99 (216)
168 2cpd_A Apobec-1 stimulating pr 60.9 26 0.00088 23.1 6.1 60 40-102 17-80 (99)
169 3ctr_A Poly(A)-specific ribonu 60.3 5.8 0.0002 27.0 2.5 54 49-102 13-69 (101)
170 2voo_A Lupus LA protein; RNA-b 59.9 13 0.00043 28.6 4.8 58 42-102 113-178 (193)
171 2adc_A Polypyrimidine tract-bi 59.9 35 0.0012 26.6 7.6 60 41-102 37-101 (229)
172 2fy1_A RNA-binding motif prote 59.7 31 0.001 23.7 6.5 61 39-102 8-77 (116)
173 2dnm_A SRP46 splicing factor; 59.5 23 0.0008 23.5 5.7 60 40-102 15-84 (103)
174 2bz2_A Negative elongation fac 59.4 18 0.00062 25.3 5.2 57 41-102 42-102 (121)
175 3zzy_A Polypyrimidine tract-bi 58.9 20 0.0007 25.6 5.4 65 33-100 21-93 (130)
176 2e5g_A U6 snRNA-specific termi 58.8 22 0.00075 23.2 5.4 59 41-102 11-73 (94)
177 1l3k_A Heterogeneous nuclear r 58.7 17 0.00059 27.3 5.5 60 40-102 15-83 (196)
178 1x4d_A Matrin 3; structural ge 58.5 30 0.001 23.4 6.0 66 35-102 12-83 (102)
179 3v4m_A Splicing factor U2AF 65 58.4 22 0.00074 24.2 5.4 47 57-103 31-89 (105)
180 1u6f_A Tcubp1, RNA-binding pro 58.4 31 0.001 24.4 6.5 58 42-102 46-113 (139)
181 1x4h_A RNA-binding protein 28; 58.2 39 0.0013 22.6 8.3 52 39-93 16-76 (111)
182 1x4f_A Matrin 3; structural ge 58.1 24 0.00081 24.5 5.5 65 37-103 24-94 (112)
183 2la4_A Nuclear and cytoplasmic 58.1 25 0.00086 23.2 5.7 58 41-101 30-91 (101)
184 1wf1_A RNA-binding protein RAL 57.8 24 0.00081 23.9 5.6 60 41-102 30-91 (110)
185 3p5t_L Cleavage and polyadenyl 57.7 16 0.00053 23.8 4.4 58 42-102 5-74 (90)
186 1wex_A Hypothetical protein (r 57.2 42 0.0014 22.7 7.1 61 39-102 16-82 (104)
187 2kt5_A RNA and export factor-b 57.0 31 0.001 23.9 6.2 58 42-102 39-105 (124)
188 2e5j_A Methenyltetrahydrofolat 56.9 38 0.0013 22.1 7.6 58 42-102 23-85 (97)
189 3ue2_A Poly(U)-binding-splicin 56.9 20 0.00069 25.0 5.1 67 37-103 19-101 (118)
190 2cpz_A CUG triplet repeat RNA- 56.9 23 0.0008 24.1 5.5 60 40-102 27-96 (115)
191 2cq1_A PTB-like protein L; RRM 56.9 30 0.001 23.3 5.8 61 39-102 16-82 (101)
192 2cpj_A Non-POU domain-containi 56.3 26 0.00088 23.1 5.5 60 40-102 17-80 (99)
193 2cq2_A Hypothetical protein LO 55.9 36 0.0012 23.7 6.2 55 36-93 23-82 (114)
194 2dit_A HIV TAT specific factor 55.4 16 0.00054 25.0 4.3 68 35-102 12-93 (112)
195 2cjk_A Nuclear polyadenylated 54.7 21 0.00072 26.0 5.2 59 41-102 90-157 (167)
196 2j76_E EIF-4B, EIF4B, eukaryot 54.4 24 0.00081 23.4 5.0 57 42-102 23-89 (100)
197 2do0_A HnRNP M, heterogeneous 54.3 35 0.0012 23.1 6.0 60 40-102 17-85 (114)
198 2dnh_A Bruno-like 5, RNA bindi 53.8 45 0.0015 22.0 7.5 58 40-100 17-83 (105)
199 2ki2_A SS-DNA binding protein 53.5 18 0.00061 23.3 4.2 57 42-102 5-71 (90)
200 2cpx_A Hypothetical protein FL 53.2 34 0.0012 23.1 5.8 61 39-102 26-96 (115)
201 2khc_A Testis-specific RNP-typ 52.5 16 0.00054 25.1 3.9 57 42-101 44-110 (118)
202 2ghp_A U4/U6 snRNA-associated 52.1 23 0.00078 28.8 5.5 61 39-102 42-109 (292)
203 2lea_A Serine/arginine-rich sp 51.8 34 0.0012 24.3 5.8 59 41-102 50-118 (135)
204 1fxl_A Paraneoplastic encephal 51.6 23 0.0008 25.6 5.0 58 42-102 6-73 (167)
205 3md3_A Nuclear and cytoplasmic 51.5 23 0.00079 25.6 5.0 58 42-102 4-70 (166)
206 1whv_A Poly(A)-specific ribonu 51.5 31 0.0011 23.3 4.9 44 49-92 23-67 (100)
207 1x5t_A Splicing factor 3B subu 51.4 23 0.00077 23.1 4.5 60 40-102 7-77 (96)
208 2ad9_A Polypyrimidine tract-bi 51.3 45 0.0015 23.3 6.1 61 39-102 32-98 (119)
209 3r27_A HnRNP L, heterogeneous 51.2 53 0.0018 22.1 7.1 54 37-93 20-76 (100)
210 1l3k_A Heterogeneous nuclear r 50.7 21 0.00071 26.8 4.7 58 42-102 108-174 (196)
211 2cqg_A TDP-43, TAR DNA-binding 50.2 52 0.0018 21.7 6.5 59 40-102 17-84 (103)
212 2xs2_A Deleted in azoospermia- 50.0 9.6 0.00033 25.5 2.4 58 41-102 12-77 (102)
213 3pgw_S U1-70K; protein-RNA com 49.8 37 0.0013 29.8 6.7 60 40-102 104-173 (437)
214 2cq0_A Eukaryotic translation 49.8 12 0.00043 24.9 2.9 60 40-102 17-86 (103)
215 1h2v_Z 20 kDa nuclear CAP bind 49.7 43 0.0015 24.2 6.2 61 39-102 40-110 (156)
216 2e44_A Insulin-like growth fac 48.4 53 0.0018 21.2 8.4 60 40-102 17-83 (96)
217 2dng_A Eukaryotic translation 48.1 27 0.00092 23.2 4.5 64 35-102 12-84 (103)
218 1b7f_A Protein (SXL-lethal pro 47.9 46 0.0016 24.0 6.2 58 42-102 7-74 (168)
219 2cpy_A RNA-binding protein 12; 46.6 13 0.00046 25.5 2.8 62 37-101 14-84 (114)
220 1x5o_A RNA binding motif, sing 46.4 44 0.0015 22.5 5.5 59 40-101 27-94 (114)
221 2f3j_A RNA and export factor b 46.4 57 0.0019 24.4 6.5 49 54-102 101-158 (177)
222 3tyt_A Heterogeneous nuclear r 44.8 46 0.0016 25.6 5.9 60 41-102 7-71 (205)
223 2ku7_A MLL1 PHD3-CYP33 RRM chi 44.7 77 0.0026 22.1 7.7 49 42-93 67-124 (140)
224 1qm9_A Polypyrimidine tract-bi 43.5 46 0.0016 25.0 5.7 59 42-102 7-70 (198)
225 4f02_A Polyadenylate-binding p 43.3 46 0.0016 25.6 5.7 59 40-101 17-85 (213)
226 1fxl_A Paraneoplastic encephal 43.3 67 0.0023 23.0 6.5 59 41-102 91-159 (167)
227 1jmt_A Splicing factor U2AF 35 42.8 52 0.0018 22.1 5.3 44 59-102 44-97 (104)
228 2d9o_A DNAJ (HSP40) homolog, s 42.3 75 0.0026 21.2 6.9 47 55-102 31-81 (100)
229 2g4b_A Splicing factor U2AF 65 41.6 43 0.0015 24.3 5.1 60 40-102 96-165 (172)
230 2cpe_A RNA-binding protein EWS 41.5 27 0.00093 23.6 3.7 59 41-102 18-94 (113)
231 2dha_A FLJ20171 protein; RRM d 41.1 24 0.00083 24.8 3.4 59 40-101 25-95 (123)
232 1b7f_A Protein (SXL-lethal pro 41.1 56 0.0019 23.5 5.7 57 41-100 92-158 (168)
233 2dgp_A Bruno-like 4, RNA bindi 40.9 75 0.0026 20.9 7.8 50 41-93 16-74 (106)
234 2hgm_A HNRPF protein, heteroge 40.9 49 0.0017 23.3 5.0 59 40-102 44-112 (126)
235 1wez_A HnRNP H', FTP-3, hetero 40.9 22 0.00075 23.9 3.0 60 40-103 17-84 (102)
236 2lxi_A RNA-binding protein 10; 40.1 29 0.00098 22.6 3.5 49 42-93 5-63 (91)
237 2dnr_A Synaptojanin-1; RRM dom 39.2 64 0.0022 21.4 5.0 46 57-102 31-77 (91)
238 2qfj_A FBP-interacting repress 38.2 63 0.0022 24.5 5.8 58 42-102 129-196 (216)
239 4f02_A Polyadenylate-binding p 37.6 61 0.0021 24.9 5.6 58 41-101 106-171 (213)
240 2hgn_A Heterogeneous nuclear r 37.1 42 0.0014 24.2 4.2 60 40-103 48-115 (139)
241 1wf0_A TDP-43, TAR DNA-binding 36.5 35 0.0012 21.8 3.5 47 41-90 8-58 (88)
242 3pgw_A U1-A; protein-RNA compl 36.3 1.1E+02 0.0038 24.4 7.3 40 54-93 220-263 (282)
243 2lmi_A GRSF-1, G-rich sequence 34.6 65 0.0022 21.5 4.8 60 40-102 13-83 (107)
244 1b35_D CRPV, protein (cricket 34.5 24 0.00083 20.3 1.9 27 39-66 30-56 (57)
245 2ek1_A RNA-binding protein 12; 34.0 19 0.00064 23.5 1.8 59 41-102 18-86 (95)
246 1wel_A RNA-binding protein 12; 33.8 50 0.0017 22.8 4.2 60 40-102 27-95 (124)
247 2cjk_A Nuclear polyadenylated 33.6 76 0.0026 22.8 5.4 49 42-93 7-64 (167)
248 3q2s_C Cleavage and polyadenyl 33.5 51 0.0017 25.9 4.5 58 42-102 72-141 (229)
249 1fj7_A Nucleolin RBD1, protein 33.4 50 0.0017 21.7 3.9 59 41-102 20-86 (101)
250 3nmr_A Cugbp ELAV-like family 32.8 91 0.0031 22.5 5.8 50 41-93 98-155 (175)
251 2e5i_A Heterogeneous nuclear r 32.7 93 0.0032 21.8 5.4 55 43-100 30-89 (124)
252 2jwa_A Receptor tyrosine-prote 32.3 70 0.0024 18.0 3.7 6 22-27 34-39 (44)
253 2g4b_A Splicing factor U2AF 65 31.2 94 0.0032 22.4 5.6 58 42-102 8-79 (172)
254 2dnn_A RNA-binding protein 12; 31.1 63 0.0022 22.0 4.2 57 41-101 19-83 (109)
255 1ufw_A Synaptojanin 2; RNP dom 30.8 74 0.0025 21.3 4.2 67 35-102 11-86 (95)
256 3nmr_A Cugbp ELAV-like family 30.8 1.1E+02 0.0036 22.1 5.8 49 42-93 7-66 (175)
257 2fc9_A NCL protein; structure 30.5 53 0.0018 21.5 3.7 64 36-102 13-82 (101)
258 3md3_A Nuclear and cytoplasmic 29.6 76 0.0026 22.6 4.8 59 41-102 90-158 (166)
259 2dgw_A Probable RNA-binding pr 29.2 94 0.0032 19.7 4.7 59 40-102 12-78 (91)
260 2hgl_A HNRPF protein, heteroge 28.7 30 0.001 24.8 2.2 58 41-101 47-115 (136)
261 3sde_A Paraspeckle component 1 27.4 71 0.0024 25.4 4.5 58 42-102 26-87 (261)
262 2yh0_A Splicing factor U2AF 65 26.9 75 0.0026 23.6 4.4 58 42-102 118-185 (198)
263 2db1_A Heterogeneous nuclear r 25.2 30 0.001 23.8 1.6 58 41-101 20-88 (118)
264 3pgw_A U1-A; protein-RNA compl 24.5 1.2E+02 0.0041 24.2 5.5 64 39-102 10-81 (282)
265 2yh0_A Splicing factor U2AF 65 22.2 1.2E+02 0.0041 22.4 4.8 58 42-102 8-79 (198)
266 2cqp_A RNA-binding protein 12; 21.8 40 0.0014 22.0 1.7 59 41-102 18-86 (98)
267 2dnl_A Cytoplasmic polyadenyla 21.4 1.1E+02 0.0038 20.6 4.0 50 40-93 10-71 (114)
268 1owx_A Lupus LA protein, SS-B, 20.0 2.3E+02 0.0078 19.7 5.4 57 35-93 14-75 (121)
No 1
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=100.00 E-value=9.4e-33 Score=253.27 Aligned_cols=261 Identities=21% Similarity=0.313 Sum_probs=178.8
Q ss_pred CCCCCCCCCCCCccccccccCCCC-cchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchh
Q 022341 29 KRFKLPPGPLPVPVFGNWLQVGDD-LNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVF 107 (298)
Q Consensus 29 ~~~~~ppGP~~~PiiGnl~~l~~~-~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~ 107 (298)
++.++||||+++|++||++++... .++..+.+|+++||+||++++|+.++|||+||++++++|.+++..|++||.....
T Consensus 5 ~~~~~PPgP~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~~~~ 84 (494)
T 3swz_A 5 TGAKYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATL 84 (494)
T ss_dssp -------CCBCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCCHHH
T ss_pred CCCCCCCCCCCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCcHHH
Confidence 445789999999999999998653 4678899999999999999999999999999999999999999999999976655
Q ss_pred hhhccCCCceEEecCChhHHHHhhhhcccccch--HHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHHHHHH
Q 022341 108 DIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTN--KVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQLMMYN 184 (298)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~ 184 (298)
+.+...+.+++++++|+.|+++||+++ +.|+. .....+.+.++++++.+++.|.+.. +.++++. .+...+++
T Consensus 85 ~~~~~~~~gl~~~~~g~~wr~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~----~~~vd~~~~~~~~t~d 159 (494)
T 3swz_A 85 DIASNNRKGIAFADSGAHWQLHRRLAM-ATFALFKDGDQKLEKIICQEISTLCDMLATHN----GQSIDISFPVFVAVTN 159 (494)
T ss_dssp HHHTTTTCSSSSSCSSHHHHHHHHHHH-HHTTTTSSSTTCHHHHHHHHHHHHHHHHHHTT----TEEECCHHHHHHHHHH
T ss_pred HHhccCCCCeEeCCCCHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHHHHHHHHHHcC----CCcccHHHHHHHHHHH
Confidence 554444556667778999999999875 55542 3356688899999999999997532 2345544 45556677
Q ss_pred HHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcc--
Q 022341 185 NMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERN-- 262 (298)
Q Consensus 185 ~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-- 262 (298)
+|++++||.+++.. ++....+....+.+..... ...+.+++|+++.+.....+..... .+....+....+++++
T Consensus 160 vi~~~~fG~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~P~l~~~p~~~~~~~~~~-~~~~~~~~~~~i~~~~~~ 235 (494)
T 3swz_A 160 VISLICFNTSYKNG-DPELNVIQNYNEGIIDNLS--KDSLVDLVPWLKIFPNKTLEKLKSH-VKIRNDLLNKILENYKEK 235 (494)
T ss_dssp HHHHHHHSCCCCTT-CTHHHHHHHHHHHHHHHHC--SSSSCCSSCGGGTSCCSHHHHHHHH-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCCcCCCC-CHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 79999999988654 3333444433332222221 1234578888763322211211111 1223334444443321
Q ss_pred -----cCChHHHHHhhcc------------cCCCCHHHHHHHHHHHhhcccCC
Q 022341 263 -----LKCAIDHILDAQT------------KGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 263 -----~~d~ld~ll~~~~------------~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
..|+++.|+++.. ...+++++|...+.++++||+++
T Consensus 236 ~~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 288 (494)
T 3swz_A 236 FRSDSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGVET 288 (494)
T ss_dssp CCTTCCCSHHHHHHHHHHTSCCC----CCSSGGGCHHHHHHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHhhhcccccccccccccCHHHHHHHHHHHhhcchhH
Confidence 4699999997531 11489999999999999999864
No 2
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=99.97 E-value=2.9e-30 Score=235.41 Aligned_cols=260 Identities=21% Similarity=0.310 Sum_probs=170.8
Q ss_pred CCCCCCCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchh
Q 022341 28 GKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVF 107 (298)
Q Consensus 28 ~~~~~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~ 107 (298)
+++.++||||+++|++||++++....++..+.+|+++||+||++++|+.++|+++||+++++||.++...|++|+.....
T Consensus 6 ~~~~~lpPgP~~~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~~~~v~~il~~~~~~f~~r~~~~~~ 85 (476)
T 3e6i_A 6 SSKGKLPPGPFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGDLPAF 85 (476)
T ss_dssp ----CCCCCCCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTSTTTTCEECCCGGG
T ss_pred cCCCCCCcCCCCcccccChhhhccccHhHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcchHhhCCCCCCchh
Confidence 34457899999999999999986555788999999999999999999999999999999999999998899998866555
Q ss_pred hhhccCCCceEEecCChhHHHHhhhhcccccchHHH--HhhHHHHHHHHHHHHHHHhcCcccccCChhhHHH-HHHHHHH
Q 022341 108 DIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVV--QQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRR-LQLMMYN 184 (298)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~ 184 (298)
..+.++ + ++..+|+.|+++||++. +.+..... ..+.+.++++++.+++.|.+.. ++++|+.. +...+++
T Consensus 86 ~~~~~~--~-l~~~~g~~w~~~Rr~~~-~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~~----~~~~d~~~~~~~~~~d 157 (476)
T 3e6i_A 86 HAHRDR--G-IIFNNGPTWKDIRRFSL-TTLRNYGMGKQGNESRIQREAHFLLEALRKTQ----GQPFDPTFLIGCAPCN 157 (476)
T ss_dssp GGGTTS--S-STTCCSTTHHHHHHHHH-HHHHHTC-CCSHHHHHHHHHHHHHHHHHHTTT----TSCBCTHHHHTHHHHH
T ss_pred heecCC--C-EEecCCcHHHHHHHHHH-HHHHhcCCCchHHHHHHHHHHHHHHHHHHHhC----CCCcChHHHHHHHHHH
Confidence 555443 3 55677999999999764 44433211 3456788899999999997642 23455444 4445666
Q ss_pred HHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccc-cccccchhhHHHHHHHHHHHHHHHHHHHHHhc--
Q 022341 185 NMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIP-ILRPFLRGYLKICKEVKERRLQLFKDYFVEER-- 261 (298)
Q Consensus 185 ~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p-~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-- 261 (298)
+|++++||.+++..++........+.+.+......+ ..+.+++| ++.. +....+...+. .+...++....++++
T Consensus 158 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~-lp~~~~~~~~~-~~~~~~~~~~~i~~~~~ 234 (476)
T 3e6i_A 158 VIADILFRKHFDYNDEKFLRLMYLFNENFHLLSTPW-LQLYNNFPSFLHY-LPGSHRKVIKN-VAEVKEYVSERVKEHHQ 234 (476)
T ss_dssp HHHHHHHSCCCCTTCHHHHHHHHHHHHHHHHTTSHH-HHHHHHSHHHHTT-SCSHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHH-cCcHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 799999999987654333222222222221111111 11224455 3321 11111111111 122233333333322
Q ss_pred -----ccCChHHHHHhhcc------cCCCCHHHHHHHHHHHhhcccCC
Q 022341 262 -----NLKCAIDHILDAQT------KGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 262 -----~~~d~ld~ll~~~~------~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
.++|+++.|+++.. +..+|++++...+.++++||+++
T Consensus 235 ~~~~~~~~d~~~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 282 (476)
T 3e6i_A 235 SLDPNCPRDLTDCLLVEMEKEKHSAERLYTMDGITVTVADLFFAGTET 282 (476)
T ss_dssp TCCTTSCCSHHHHHHHHHHSSSSCSSCSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCccHHHHHHHHHHhcccCCCCCcCHHHHHHHHHHHHhcchHH
Confidence 25799999986532 12589999999999999999864
No 3
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=99.97 E-value=3.7e-30 Score=234.79 Aligned_cols=264 Identities=22% Similarity=0.299 Sum_probs=164.9
Q ss_pred CCCCCCCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchh
Q 022341 28 GKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVF 107 (298)
Q Consensus 28 ~~~~~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~ 107 (298)
+++.++||||+++|+|||++++....++..+.+|+++|||||++++|+.++|+|+||++|++||.+++..|++||.....
T Consensus 6 ss~~kLPPGP~~lP~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~i~~vl~~~~~~f~~r~~~~~~ 85 (479)
T 3tbg_A 6 SSKGKLPPGPLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPIT 85 (479)
T ss_dssp ---CCCCCCSCCBTTTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETTEEEEEEEHHHHHHHHHTTTGGGSCBCCCCGGG
T ss_pred CCCCCCCCCCCCcCcccchHhhcCCCHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHHhCChhhcCCCchHHH
Confidence 33347999999999999999987666788899999999999999999999999999999999999999999999876655
Q ss_pred hhhcc--CCCceEEecCChhHHHHhhhhcccccchHHHH--hhHHHHHHHHHHHHHHHhcCcccccCChhhHHH-HHHHH
Q 022341 108 DIFTG--KGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQ--QQRFNWEDEAARVVEDVKKDPEAATNGIVLRRR-LQLMM 182 (298)
Q Consensus 108 ~~~~~--~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~ 182 (298)
..+.. .+.+++++.+|+.|+++|+.+. +.|+..... .+...+......+...+.... ...+++.. +...+
T Consensus 86 ~~~~~~~~~~~~~~~~~g~~w~~~R~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~ 160 (479)
T 3tbg_A 86 QILGFGPRSQGVFLARYGPAWREQRRFSV-STLRNLGLGKKSLEQWVTEEAACLCAAFANHS----GRPFRPNGLLDKAV 160 (479)
T ss_dssp GGGTCBTTBCCSTTCCSSHHHHHHHHHHH-HHHHHTTSTTCHHHHHHHHHHHHHHHHHHTTT----TCCBCTHHHHHHHH
T ss_pred HHhccCCCCCceeeCCCCHHHHHHHHHHH-HHhcchhhhHHHHHHHHHHHHHHHHHHHHhcc----CCcccHHHHHHHHH
Confidence 44321 2344567788999999999875 444443332 345556666666666665532 22345444 44455
Q ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCcccccccccccc---chhhHHHHHHHHHHHHHHHHHHHHH
Q 022341 183 YNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPF---LRGYLKICKEVKERRLQLFKDYFVE 259 (298)
Q Consensus 183 ~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~---~~~~~~~~~~~~~~~~~~~~~~~i~ 259 (298)
++++++++||.+++..++.................... ......+|+.... ........+. ..+...+......+
T Consensus 161 ~~~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 238 (479)
T 3tbg_A 161 SNVIASLTCGRRFEYDDPRFLRLLDLAQEGLKEESGFL-REVLNAVPVLLHIPALAGKVLRFQKA-FLTQLDELLTEHRM 238 (479)
T ss_dssp HHHHHHHHHSCCCCTTCHHHHHHHHHHHHHHHTTSSHH-HHHHHHSGGGGGSHHHHHHHTHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCcccccchhhhhhhhhhhhhhhhhhhhh-hhhhcccchhccchhhHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 66699999999987755433222222211111110000 0011223332211 1111111111 11112222221111
Q ss_pred h----cccCChHHHHHhhc------ccCCCCHHHHHHHHHHHhhcccCC
Q 022341 260 E----RNLKCAIDHILDAQ------TKGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 260 ~----~~~~d~ld~ll~~~------~~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
. ....|+++.++... +...+|++++.+++.++++||+++
T Consensus 239 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 287 (479)
T 3tbg_A 239 TWDPAQPPRDLTEAFLAEMEKAKGNPESSFNDENLRIVVADLFSAGMVT 287 (479)
T ss_dssp HCCTTSCCCSHHHHHHHHHHHTTTCTTCSCSHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccchhhhhhhhhhhhcccCCccchhhHHHHHHHHHHHHhhhhh
Confidence 1 12568888776431 123699999999999999999864
No 4
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=99.97 E-value=5.8e-30 Score=235.09 Aligned_cols=251 Identities=12% Similarity=0.160 Sum_probs=166.1
Q ss_pred CCCCCCCCCCccccccccCCCC---cchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchh
Q 022341 31 FKLPPGPLPVPVFGNWLQVGDD---LNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVF 107 (298)
Q Consensus 31 ~~~ppGP~~~PiiGnl~~l~~~---~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~ 107 (298)
.+.||||+++|++||++++... ..+..+.+|+++||+||++++|+.++|+++||++++++|.+ ..|++|+.....
T Consensus 44 ~~~pPGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~il~~--~~~~~r~~~~~~ 121 (503)
T 3s79_A 44 TSSIPGPGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKH--NHYSSRFGSKLG 121 (503)
T ss_dssp -CCCCSCCCCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCSEEEEESSSSEEEEECCHHHHHHHHHS--GGGCCCCCCHHH
T ss_pred cCCCCCCCCCceeeehhccccccccchhHHHHHHHHHhCCeEEEEeCCccEEEECCHHHHHHHHhc--CCCCCcchhhhh
Confidence 4689999999999999987431 13457889999999999999999999999999999999954 468888754433
Q ss_pred hhhcc-CCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHH-HHHHHHHH
Q 022341 108 DIFTG-KGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRR-LQLMMYNN 185 (298)
Q Consensus 108 ~~~~~-~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~ 185 (298)
....+ .+.+++++.+|+.|+++||+++ +.|+...++.+.+.+.++++++++.|.+..+. ++.+|+.. +...++++
T Consensus 122 ~~~~~~~~~~~~~~~~g~~w~~~Rr~~~-~~f~~~~l~~~~~~~~~~~~~~l~~l~~~~~~--~~~vdl~~~~~~~~~~v 198 (503)
T 3s79_A 122 LQCIGMHEKGIIFNNNPELWKTTRPFFM-KALSGPGLVRMVTVCAESLKTHLDRLEEVTNE--SGYVDVLTLLRRVMLDT 198 (503)
T ss_dssp HHHHTCTTSSSTTCCCHHHHHHHHHHHH-HHTSTHHHHHHHHHHHHHHHHHHTTGGGTBCT--TSCBCHHHHHHHHHHHH
T ss_pred hhhhccCCCceeeCCCccHHHHHHHhhh-HhhChHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCeEcHHHHHHHHHHHH
Confidence 22222 3445667788999999999975 77787778888889999999999988764321 23466554 45555666
Q ss_pred HHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc----
Q 022341 186 MYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---- 261 (298)
Q Consensus 186 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---- 261 (298)
|++++||.+++. ++..+.+....+. ....... .++++.+.+..+...+... ...++....++++
T Consensus 199 i~~~~fG~~~~~--~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~ 266 (503)
T 3s79_A 199 SNTLFLRIPLDE--SAIVVKIQGYFDA---WQALLIK--PDIFFKISWLYKKYEKSVK-----DLKDAIEVLIAEKRRRI 266 (503)
T ss_dssp HHHHHTCCCCCH--HHHHHHHHHHHHH---HHHHTTC--CHHHHHSGGGTHHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcccCc--hhHHHHHHHHHHH---HHHHhcC--cHHHhhcchhHHHHHHHHH-----HHHHHHHHHHHHHHHHh
Confidence 999999987742 2222222222221 1111110 1222111111122111111 1122222222211
Q ss_pred -------ccCChHHHHHhhcccCCCCHHHHHHHHHHHhhcccCC
Q 022341 262 -------NLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 262 -------~~~d~ld~ll~~~~~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
...|+++.|+++.+++.+|++++...+.++++||+++
T Consensus 267 ~~~~~~~~~~d~l~~ll~~~~~~~l~~~~i~~~~~~~~~AG~~T 310 (503)
T 3s79_A 267 STEEKLEECMDFATELILAEKRGDLTRENVNQCILEMLIAAPDT 310 (503)
T ss_dssp HTCTTTTTTCCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred hcccccchHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHcccH
Confidence 1349999999876667899999999999999999864
No 5
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=99.97 E-value=7.9e-30 Score=234.32 Aligned_cols=260 Identities=25% Similarity=0.362 Sum_probs=156.2
Q ss_pred CCCCCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhhh
Q 022341 30 RFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDI 109 (298)
Q Consensus 30 ~~~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~~ 109 (298)
+.+.||||+++|++||++++... ++..+.+|+++||+||++++|+.++|+++||+++++||.++...|++|+.......
T Consensus 7 ~~~~pPgP~~~P~iG~~~~~~~~-~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~~ 85 (507)
T 3pm0_A 7 SKGKPPGPFAWPLIGNAAAVGQA-AHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFASFRV 85 (507)
T ss_dssp ---------------------CC-HHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTSCBCCCCHHHHH
T ss_pred CCCCCcCCCCCCeeCchhhcCcc-HHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCcchHHHh
Confidence 45689999999999999998643 78899999999999999999999999999999999999999999999987655444
Q ss_pred hccCCCceEEecCChhHHHHhhhhcccccchHH------HHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHHHH
Q 022341 110 FTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKV------VQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQLMM 182 (298)
Q Consensus 110 ~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~ 182 (298)
+. .+.+++++.+|+.|+++||++. +.|+... .+.+.+.+.++++.+++.+.+..+. ++++++. .+...+
T Consensus 86 ~~-~g~~l~~~~~g~~w~~~R~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~--~~~vd~~~~~~~~~ 161 (507)
T 3pm0_A 86 VS-GGRSMAFGHYSEHWKVQRRAAH-SMMRNFFTRQPRSRQVLEGHVLSEARELVALLVRGSAD--GAFLDPRPLTVVAV 161 (507)
T ss_dssp GG-GGTCSSSSCSSHHHHHHHHHHH-HHHHHSTTSSTTHHHHHHHHHHHHHHHHHHHHHHTTGG--GCCBCCHHHHHHHH
T ss_pred hc-CCCceEECCCChHHHHHHHHHH-HHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhccc--CCCcChHHHHHHHH
Confidence 33 3345556778999999999875 4433222 2348888999999999999865432 2345544 455556
Q ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchh---hHHHHHHHHHHHHHHHHHHHHH
Q 022341 183 YNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRG---YLKICKEVKERRLQLFKDYFVE 259 (298)
Q Consensus 183 ~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~---~~~~~~~~~~~~~~~~~~~~i~ 259 (298)
+++|++++||.+++..+ +....+......+..... ...+.+++|++..+... ..+...+. .+....+....++
T Consensus 162 ~dvi~~~~fG~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~P~l~~lp~~~~~~~~~~~~~-~~~~~~~~~~~i~ 237 (507)
T 3pm0_A 162 ANVMSAVCFGCRYSHDD-PEFRELLSHNEEFGRTVG--AGSLVDVMPWLQYFPNPVRTVFREFEQL-NRNFSNFILDKFL 237 (507)
T ss_dssp HHHHHHHHTSCCCCTTC-HHHHHHTSCHHHHHHHHS--TTCCTTTCGGGGGSCSHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHccccCCCCC-HHHHHHHHHHHHHHHhcc--cchHHHHhHHHHHcCchhHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 66799999999987643 322222111111111111 12234667776532111 11111111 1122223332222
Q ss_pred h--------cccCChHHHHHhhcc---cC-------CCCHHHHHHHHHHHhhcccCC
Q 022341 260 E--------RNLKCAIDHILDAQT---KG-------EINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 260 ~--------~~~~d~ld~ll~~~~---~~-------~~t~~~i~~~~~~l~~aG~~~ 298 (298)
+ ....|+++.|++..+ ++ .++++++...+.++++||+++
T Consensus 238 ~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~dT 294 (507)
T 3pm0_A 238 RHCESLRPGAAPRDMMDAFILSAEKKAAGDSHGGGARLDLENVPATITDIFGASQDT 294 (507)
T ss_dssp HHHHHCCTTCCCCSHHHHHHHHHHHHHSCC----CCCCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHhccccccCCccHHHHHHHHhhhhccccccCCCCCCCHHHHHHHHHHHHhcccch
Confidence 1 225799999996422 11 489999999999999999863
No 6
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=99.97 E-value=1.3e-30 Score=238.92 Aligned_cols=253 Identities=17% Similarity=0.263 Sum_probs=166.9
Q ss_pred cCCCCCCCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcch
Q 022341 27 RGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVV 106 (298)
Q Consensus 27 ~~~~~~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~ 106 (298)
++++.++||||++ ++++....++..+.+|+++||+||++++|+.++|+++||++++++|.+++..|++||....
T Consensus 24 ~~~~~~lPPGP~~------l~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~~f~~r~~~~~ 97 (496)
T 3qz1_A 24 KLRNLHLPPLVPG------FLHLLQPNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIPS 97 (496)
T ss_dssp -----CCCCBCSC------SCTTSSSCHHHHHHHGGGTSCSEEEECSSSSCEEEECSTTHHHHTTTTSCSTTCBCCCCTT
T ss_pred hccCCCCCcCCcc------ccccCCCcchHHHHHHHHHhCCEEEEEeCCcCEEEECCHHHHHHHHHhCcHhhCCCCCcch
Confidence 3445679999987 5556555578899999999999999999999999999999999999999889999987654
Q ss_pred hhhhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHH-HHHHHHHH
Q 022341 107 FDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRR-LQLMMYNN 185 (298)
Q Consensus 107 ~~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~ 185 (298)
......++.+++++++|+.|+++||++. +.|+.+.++.+.+.++++++.+++.|.+.. ++++|+.. +...++++
T Consensus 98 ~~~~~~~~~~l~~~~~g~~w~~~Rr~~~-~~f~~~~~~~~~~~i~~~~~~l~~~l~~~~----~~~vd~~~~~~~~~~dv 172 (496)
T 3qz1_A 98 YKLVSQRCQDISLGDYSLLWKAHKKLTR-SALLLGTRSSMEPWVDQLTQEFCERMRVQA----GAPVTIQKEFSLLTCSI 172 (496)
T ss_dssp TTTSCTTCCCSSSSCCSHHHHHHHHHHH-HHHHC--CCCHHHHHHHHHHHHHHHHHTTC----SCCCHHHHHHTHHHHHH
T ss_pred HHHhcCCCCceEECCCCHHHHHHHHHHH-HHHhhccHhhHHHHHHHHHHHHHHHHHhcC----CCccCHHHHHHHHHHHH
Confidence 4433322225555555999999999975 666666677899999999999999998632 23566654 44555666
Q ss_pred HHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccC---CccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc-
Q 022341 186 MYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFE---YNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER- 261 (298)
Q Consensus 186 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~- 261 (298)
|++++||. .+++....+. +.+........ ..+.+++|+++.+.....+...+. .+...++....++++
T Consensus 173 i~~~~fG~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~P~l~~lp~~~~~~~~~~-~~~~~~~~~~~i~~~~ 244 (496)
T 3qz1_A 173 ICYLTFGN----KEDTLVHAFH---DCVQDLMKTWDHWSIQILDMVPFLRFFPNPGLWRLKQA-IENRDHMVEKQLRRHK 244 (496)
T ss_dssp TTTTSTTC----CCHHHHHHHH---HHHHTTTTTTSSHHHHHHHHCGGGCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHhcCC----CCChHHHHHH---HHHHHHHHHhccchhHHHHhHHHHHhCChHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 99999998 2233322222 22222222111 123466777653221111111111 122333333333322
Q ss_pred ------ccCChHHHHHhhccc-------CCCCHHHHHHHHHHHhhcccCC
Q 022341 262 ------NLKCAIDHILDAQTK-------GEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 262 ------~~~d~ld~ll~~~~~-------~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
..+|+++.|++...+ +.++++++..++.++++||+++
T Consensus 245 ~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~dT 294 (496)
T 3qz1_A 245 ESMVAGQWRDMTDYMLQGVGRQRVEEGPGQLLEGHVHMSVVDLFIGGTET 294 (496)
T ss_dssp HSCCSSCCSSSHHHHTTSSTTCCC-----CCCTHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCccchHHHHHHHHHhccccCCcccccHHHHHHHHHHHHHhhhHH
Confidence 257999999976422 2699999999999999999864
No 7
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=99.96 E-value=9e-30 Score=232.78 Aligned_cols=254 Identities=19% Similarity=0.257 Sum_probs=168.5
Q ss_pred CCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhc-CccccCCCCcchhhhhc
Q 022341 33 LPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQ-GVEFGSRTRNVVFDIFT 111 (298)
Q Consensus 33 ~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~-~~~f~~r~~~~~~~~~~ 111 (298)
-+|||+++|++||++++... ++..+.+|+++||+||++++|+.++|+++||+++++||.++ ...|++|+...... +.
T Consensus 15 ~~PGP~~~PliGn~~~~~~~-~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~~f~~r~~~~~~~-~~ 92 (485)
T 3nxu_A 15 GIPGPTPLPFLGNILSYHKG-FCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVG-FM 92 (485)
T ss_dssp TCCCCCCBTTTBTGGGGGGC-HHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCCCCCCSCCG-GG
T ss_pred CCCCCCCcCeecCcHHhhcC-hHHHHHHHHHHcCCeEEEEeCCCCEEEECCHHHHHHHHhccchhhccCCccccccc-cc
Confidence 36999999999999998653 67788999999999999999999999999999999999987 67888887543332 33
Q ss_pred cCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHHH-HHHHHHHHHHHH
Q 022341 112 GKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRL-QLMMYNNMYRIM 190 (298)
Q Consensus 112 ~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~ 190 (298)
+.+ +++.+|+.|+++||++ .+.|+.+.++.+.+.++++++.+++.|.+..+ .++++|+... ...++++|++++
T Consensus 93 ~~~---l~~~~g~~w~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~--~g~~~d~~~~~~~~~~dvi~~~~ 166 (485)
T 3nxu_A 93 KSA---ISIAEDEEWKRLRSLL-SPTFTSGKLKEMVPIIAQYGDVLVRNLRREAE--TGKPVTLKDVFGAYSMDVITSTS 166 (485)
T ss_dssp GGS---TTTCCHHHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTCCEEHHHHHHHHHHHHHHHHH
T ss_pred ccC---ccccCCcHHHHHHhhc-ChhcCHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcCcHHHHHHHHHHHHHHHHH
Confidence 333 5667899999999987 58899999999999999999999999975322 1235666554 445566699999
Q ss_pred hccccCCCCchHHHHHHHHHHHHHhhhhcc-C---Cccccccccccccch-----hhHHHHHHHHHHHHHHHHHHHHHh-
Q 022341 191 FDRRFESQDDPLFNRLKALNGERSRLAQSF-E---YNYGDFIPILRPFLR-----GYLKICKEVKERRLQLFKDYFVEE- 260 (298)
Q Consensus 191 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~d~~p~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~- 260 (298)
||.+++..+++....... ........ . ....+.+|++.+... ...+...+...+..++..+...+.
T Consensus 167 fG~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (485)
T 3nxu_A 167 FGVNIDSLNNPQDPFVEN----TKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRLEDT 242 (485)
T ss_dssp HSCCCCGGGCTTCHHHHH----HTTSCCCCTTSHHHHHHHHCTTHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCccccccCCCcHHHHH----HHHHhchhhHHHHHHHHHHhhhhHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhcc
Confidence 999887543221111111 11111110 0 001234554432110 000111111111111111111111
Q ss_pred -cccCChHHHHHhhcc------cCCCCHHHHHHHHHHHhhcccCC
Q 022341 261 -RNLKCAIDHILDAQT------KGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 261 -~~~~d~ld~ll~~~~------~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
....|+++.|++... ...+|++++...+.++++||+++
T Consensus 243 ~~~~~d~l~~ll~~~~~~~~~~~~~l~~~ei~~~~~~l~~AG~dT 287 (485)
T 3nxu_A 243 QKHRVDFLQLMIDSQNSKETESHKALSDLELVAQSIIFIFAGYET 287 (485)
T ss_dssp ---CCCHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHhhhccccccccCCCHHHHHHHHHHHHHHhhHH
Confidence 125799999997542 13599999999999999999864
No 8
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=99.96 E-value=6.8e-29 Score=226.66 Aligned_cols=264 Identities=24% Similarity=0.318 Sum_probs=160.6
Q ss_pred hcCCCCCCCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcc
Q 022341 26 LRGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV 105 (298)
Q Consensus 26 ~~~~~~~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~ 105 (298)
.++++.+.||||+++|++||++++....++..+.+|+++||+||++++|+.++|+++||+++++||.++...|++|+...
T Consensus 5 ~~~~~~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~il~~~~~~f~~~~~~~ 84 (477)
T 1r9o_A 5 TSSGRGKLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFP 84 (477)
T ss_dssp ----CCBCCCCSSSCC-----CCBCHHHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECCCS
T ss_pred cccCCCCCCCCCCCCceeccHhhcCCCChHHHHHHHHHHhCCEEEEEECCCcEEEECCHHHHHHHHhcccHhhCCCCcch
Confidence 34444468999999999999998843346778999999999999999999999999999999999988888888877543
Q ss_pred hhhhhccCCCceEEecCChhHHHHhhhhcccccchH--HHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHH-HHHHH
Q 022341 106 VFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNK--VVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRR-LQLMM 182 (298)
Q Consensus 106 ~~~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~ 182 (298)
...... .+.+ ++..+|+.|+++||++. +.|+.. ..+.+.+.+.++++.+++.|.+.. ++++|+.. +...+
T Consensus 85 ~~~~~~-~~~~-l~~~~g~~w~~~Rr~~~-~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~----~~~vd~~~~~~~~~ 157 (477)
T 1r9o_A 85 LAERAN-RGFG-IVFSNGKKWKEIRRFSL-MTLRNFGMGKRSIEDRVQEEARCLVEELRKTK----ASPCDPTFILGCAP 157 (477)
T ss_dssp CCCTTT-CTTS-STTCCHHHHHHHHHHHH-HHHTTSSSCSSCHHHHHHHHHHHHHHHHHTTT----TSCBCTHHHHHHHH
T ss_pred hhhhcc-CCCc-eEecCChHHHHHHHHHH-HHHHHhCCChHHHHHHHHHHHHHHHHHHHhcC----CCccChHHHHHHHH
Confidence 333222 2333 45568999999999875 555554 235678889999999999997532 12455544 44455
Q ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc-
Q 022341 183 YNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER- 261 (298)
Q Consensus 183 ~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~- 261 (298)
+++|++++||.+++..++........+.+.+....... ..+.+++|++..++....+...+. .+....+....++++
T Consensus 158 ~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~l~~~lp~~~~~~~~~-~~~~~~~~~~~i~~r~ 235 (477)
T 1r9o_A 158 CNVICSIIFHKRFDYKDQQFLNLMEKLNENIKILSSPW-IQICNNFSPIIDYFPGTHNKLLKN-VAFMKSYILEKVKEHQ 235 (477)
T ss_dssp HHHHHHHHHSCCCCTTCHHHHHHHHHHHHHHHHHTCCB-C-------CCCSCCTTCHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCcCCCCCHHHHHHHHHHHHHHHhhccch-hHHHhhccHHHHhcchHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 66699999999887543322222222111111111111 112356676332222111111111 112233333333322
Q ss_pred ------ccCChHHHHHhhcc------cCCCCHHHHHHHHHHHhhcccCC
Q 022341 262 ------NLKCAIDHILDAQT------KGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 262 ------~~~d~ld~ll~~~~------~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
.++|+++.|++... ...+|++++.+++.++++||+++
T Consensus 236 ~~~~~~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 284 (477)
T 1r9o_A 236 ESMDMNNPQDFIDCFLMKMEKEKHNQPSEFTIESLENTAVDLFGAGTET 284 (477)
T ss_dssp HTCCTTCCCSHHHHHHHHHHHHTTSCSCSCCHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCchHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHhhccccc
Confidence 24699999985421 13599999999999999999864
No 9
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=99.96 E-value=3e-28 Score=222.78 Aligned_cols=261 Identities=20% Similarity=0.252 Sum_probs=171.7
Q ss_pred CCCCCCCCCCCccccccccCCCCc--chHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchh
Q 022341 30 RFKLPPGPLPVPVFGNWLQVGDDL--NHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVF 107 (298)
Q Consensus 30 ~~~~ppGP~~~PiiGnl~~l~~~~--~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~ 107 (298)
+.++||||+++|++||++++.... ++..+.+|+++||+||++++|+.++|+++||+++++|+.+++..|++|+.....
T Consensus 10 ~~~lpPgP~~~p~~G~~~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~vl~~~~~~f~~~~~~~~~ 89 (481)
T 3czh_A 10 PMGFPPGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLF 89 (481)
T ss_dssp --CCCCCCCCBTTTBHHHHHHHCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCCCHHH
T ss_pred CCCCCCCCCCCcccccHhhcCcccCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhhchHhhCCCCCcHHH
Confidence 346899999999999998875433 677899999999999999999999999999999999999888889998865444
Q ss_pred hhhccCCCceEEecCChhHHHHhhhhcccccchHH--HHhhHHHHHHHHHHHHHHHhcCcccccCChhhH-HHHHHHHHH
Q 022341 108 DIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKV--VQQQRFNWEDEAARVVEDVKKDPEAATNGIVLR-RRLQLMMYN 184 (298)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~ 184 (298)
..+.+ +.+++++.+|+.|+++||++. +.|+... ...+.+.++++++.+++.|.+.. ++.+|+ ..+...+++
T Consensus 90 ~~~~~-~~~~~~~~~g~~w~~~R~~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~----~~~~d~~~~~~~~~~~ 163 (481)
T 3czh_A 90 MKMTK-MGGLLNSRYGRGWVDHRRLAV-NSFRYFGYGQKSFESKILEETKFFNDAIETYK----GRPFDFKQLITNAVSN 163 (481)
T ss_dssp HHHHT-TCSSTTCCSSHHHHHHHHHHH-HHHHHTTTTSTTHHHHHHHHHHHHHHHHHTTT----TCCBCCHHHHHHHHHH
T ss_pred HhhcC-CCCeEeCCCChHHHHHHHHHH-HHHHHhcCChHHHHHHHHHHHHHHHHHHHHcC----CCCcCHHHHHHHHHHH
Confidence 44333 234455678999999999875 6665432 25688899999999999997532 123454 445555666
Q ss_pred HHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc---
Q 022341 185 NMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER--- 261 (298)
Q Consensus 185 ~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--- 261 (298)
+|++++||.+++.. ++....+.................+.+++|+++.......+...+. .+....+....++++
T Consensus 164 vi~~~~fG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lp~~~~~~~~~~-~~~~~~~~~~~i~~r~~~ 241 (481)
T 3czh_A 164 ITNLIIFGERFTYE-DTDFQHMIELFSENVELAASASVFLYNAFPWIGILPFGKHQQLFRN-AAVVYDFLSRLIEKASVN 241 (481)
T ss_dssp HHHHHHHSSCCCTT-CHHHHHHHHHHHHHHHHTTSHHHHHHHHCGGGGGCSSSHHHHHHHH-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCC-CHHHHHHHHHHHHHHhhhccchhHHhhhhHHHHhCCchHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 79999999988643 3332222221111111111000002355676642110111111111 122333444444332
Q ss_pred ----ccCChHHHHHhhcc----c--CCCCHHHHHHHHHHHhhcccCC
Q 022341 262 ----NLKCAIDHILDAQT----K--GEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 262 ----~~~d~ld~ll~~~~----~--~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
.++|+++.|+++.. + ..+|++++...+.++++||+++
T Consensus 242 ~~~~~~~d~l~~ll~~~~~~~~~~~~~l~~~ei~~~~~~l~~AG~dT 288 (481)
T 3czh_A 242 RKPQLPQHFVDAYLDEMDQGKNDPSSTFSKENLIFSVGELIIAGTET 288 (481)
T ss_dssp CCTTCCSSHHHHHHHHHHHTTTCTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHhccch
Confidence 24699999997531 1 2599999999999999999864
No 10
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=99.96 E-value=5.4e-28 Score=220.64 Aligned_cols=258 Identities=14% Similarity=0.232 Sum_probs=167.0
Q ss_pred CCCCCCCCCCCCccccccccCC----CCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCc
Q 022341 29 KRFKLPPGPLPVPVFGNWLQVG----DDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN 104 (298)
Q Consensus 29 ~~~~~ppGP~~~PiiGnl~~l~----~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~ 104 (298)
++...+|||+++|++||++++. ...++..+.+|+++||+||++++|+.++|+++||+++++|+.++ ..|++|+..
T Consensus 21 ~pl~~~PGP~~~p~iG~~~~~~~~~~~~~~~~~~~~l~~~YG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~~~~r~~~ 99 (482)
T 3k9v_A 21 RNVTDLPGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRTE-SAHPQRLEI 99 (482)
T ss_dssp EEGGGCCCSCCCTTTBTHHHHHHTTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTC-CSSCCCCCC
T ss_pred CCCCCCCCCCCCCccccHHHHhccCCcccHHHHHHHHHHHcCCEEEEccCCCCEEEEcCHHHHHHHHHhc-CCCCCCCCc
Confidence 3455679999999999998873 22367789999999999999999999999999999999999874 578888754
Q ss_pred c---hhhhhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHH-HHH
Q 022341 105 V---VFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRR-LQL 180 (298)
Q Consensus 105 ~---~~~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~ 180 (298)
. .+....+.+.+ +++.+|+.|+++||.+.+.+++.+.++.+.+.++++++.+++.|.+..+. .++++|+.. +..
T Consensus 100 ~~~~~~~~~~~~~~~-l~~~~g~~w~~~Rr~~~~~f~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~-~g~~vd~~~~~~~ 177 (482)
T 3k9v_A 100 KPWKAYRDHRNEAYG-LMILEGQEWQRVRSAFQKKLMKPVEIMKLDKKINEVLADFLERMDELCDE-RGRIPDLYSELNK 177 (482)
T ss_dssp HHHHHHHHHHTCCCC-TTTCCHHHHHHHHHHHHHHHTCHHHHGGGHHHHHHHHHHHHHHHHHHCCT-TSCCTTHHHHHHH
T ss_pred hHHHHHHHhcCCCCC-ceeCCCchHHHHHHHhhHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCHHHHHHH
Confidence 3 22223333333 46678999999999987556688888999999999999999999764321 123566654 455
Q ss_pred HHHHHHHHHHhccccCCCCc---hHHHHHHHHHHHHHhhhhccCCcccccccc-ccccc--hhhH---HHHHHHHHHHHH
Q 022341 181 MMYNNMYRIMFDRRFESQDD---PLFNRLKALNGERSRLAQSFEYNYGDFIPI-LRPFL--RGYL---KICKEVKERRLQ 251 (298)
Q Consensus 181 ~~~~~i~~~~fG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~-l~~~~--~~~~---~~~~~~~~~~~~ 251 (298)
.++++|++++||.+++..++ .....+.. .+..+...+. ...++|. +..++ ..+. +..... .+...
T Consensus 178 ~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~p~~~~~~l~~~~~~~~~~~~~~~-~~~~~ 251 (482)
T 3k9v_A 178 WSFESICLVLYEKRFGLLQKETEEEALTFIT---AIKTMMSTFG--KMMVTPVELHKRLNTKVWQAHTLAWDTI-FKSVK 251 (482)
T ss_dssp HHHHHHHHHHHSCCCCSSSTTSTTSSHHHHH---HHHHHHTTGG--GGSSSCHHHHHHHTCHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHcccccCCCCCCcchHHHHHHH---HHHHHHHHHH--HHHhhhHHHHHhcCCHHHHHHHHHHHHH-HHHHH
Confidence 56667999999998854321 11111111 1222222111 1122331 11111 1111 111111 11111
Q ss_pred HHHHHHHH---hcccCChHHHHHhhcccCCCCHHHHHHHHHHHhhcccCC
Q 022341 252 LFKDYFVE---ERNLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 252 ~~~~~~i~---~~~~~d~ld~ll~~~~~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
+.+++..+ .....|+++.+++. +.+|++++..++.++++||+++
T Consensus 252 ~~i~~r~~~~~~~~~~d~l~~ll~~---~~l~~~ei~~~~~~~~~AG~dT 298 (482)
T 3k9v_A 252 PCIDNRLQRYSQQPGADFLCDIYQQ---DHLSKKELYAAVTELQLAAVET 298 (482)
T ss_dssp HHHHHHHHHTTTCTTSCHHHHHHHH---TCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCchHHHHHHHhc---cCCCHHHHHHHHHHHHHhhhhh
Confidence 12221111 12246888888864 3589999999999999999864
No 11
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=99.96 E-value=1.2e-28 Score=225.00 Aligned_cols=259 Identities=26% Similarity=0.370 Sum_probs=168.6
Q ss_pred CCCCCCCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchh
Q 022341 28 GKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVF 107 (298)
Q Consensus 28 ~~~~~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~ 107 (298)
+++.+.||||+++|++||++++....++..+.+|+++||+||++++|+.++|+++||+++++||.++...|++|+.....
T Consensus 6 ~~~~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~ 85 (476)
T 1po5_A 6 SSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVV 85 (476)
T ss_dssp ---CCCCCCSCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCGGGG
T ss_pred cCCCCCCcCCCCCCccccHHhccCCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCCcHHH
Confidence 33446899999999999999984444788899999999999999999999999999999999998888889887754333
Q ss_pred hhhccCCCceEEecCChhHHHHhhhhcccccchH--HHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHH-HHHHHHH
Q 022341 108 DIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNK--VVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRR-LQLMMYN 184 (298)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~ 184 (298)
.... .+.+ ++..+|+.|+++||++. +.|+.. ..+.+.+.+.++++.+++.|.+.. ++++|+.+ +...+++
T Consensus 86 ~~~~-~~~~-l~~~~g~~w~~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~----~~~~d~~~~~~~~~~~ 158 (476)
T 1po5_A 86 DPIF-QGYG-VIFANGERWRALRRFSL-ATMRDFGMGKRSVEERIQEEARCLVEELRKSK----GALLDNTLLFHSITSN 158 (476)
T ss_dssp CSCC-SSCC-CCCSSHHHHHHHHHHHH-HHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTT----TCCBCCHHHHHHHHHH
T ss_pred Hhhc-CCCc-eEecCCcHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHHHHHHHHHHhcC----CCccCHHHHHHHHHHH
Confidence 3222 2333 45568999999999874 666554 346688889999999999997532 12345444 4455566
Q ss_pred HHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCC---ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 022341 185 NMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEY---NYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER 261 (298)
Q Consensus 185 ~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 261 (298)
+|++++||.+++..+ +.+.. +.+.+......... ...+++|++..++....+...+. .+....+....++++
T Consensus 159 vi~~~~fG~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~P~~~~~lp~~~~~~~~~-~~~~~~~~~~~i~~r 233 (476)
T 1po5_A 159 IICSIVFGKRFDYKD-PVFLR---LLDLFFQSFSLISSFSSQVFELFSGFLKHFPGTHRQIYRN-LQEINTFIGQSVEKH 233 (476)
T ss_dssp HHHHHHHSSCCCTTC-HHHHH---HHHHHHHHTTTCCTTHHHHHHHTHHHHHTSSCSHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCC-HHHHH---HHHHHHHHHhhhcchhhHHHHhhhHHHHhcCcHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 799999999887533 32222 22222222211100 11245665221111111111111 122333444444332
Q ss_pred -------ccCChHHHHHhhcc------cCCCCHHHHHHHHHHHhhcccCC
Q 022341 262 -------NLKCAIDHILDAQT------KGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 262 -------~~~d~ld~ll~~~~------~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
.++|+++.|+++.. ...+|++++.+++.++++||+++
T Consensus 234 ~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 283 (476)
T 1po5_A 234 RATLDPSNPRDFIDVYLLRMEKDKSDPSSEFHHQNLILTVLSLFFAGTET 283 (476)
T ss_dssp HTTCCTTSCCSHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCcccHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhcccc
Confidence 24699999986421 12489999999999999999864
No 12
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=99.96 E-value=3e-28 Score=222.40 Aligned_cols=261 Identities=23% Similarity=0.317 Sum_probs=170.7
Q ss_pred CCCCCCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhh
Q 022341 29 KRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFD 108 (298)
Q Consensus 29 ~~~~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~ 108 (298)
++.++||||+++|++||++++....++..+.+|+++||+||++++|+.++|+++||+++++||.++...|++|+......
T Consensus 7 ~~~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~ 86 (476)
T 2fdv_A 7 SKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQATFD 86 (476)
T ss_dssp -CCBCCCCCCCBTTTBTGGGCCTTBHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCCHHHH
T ss_pred ccCCCCCCCCCCcccccHhhcCCcchHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcChHhhCCCCCcHHHh
Confidence 33468999999999999999854457888999999999999999999999999999999999988878898887544333
Q ss_pred hhccCCCceEEecCChhHHHHhhhhcccccchHHH--HhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHHHHHHH
Q 022341 109 IFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVV--QQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQLMMYNN 185 (298)
Q Consensus 109 ~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~ 185 (298)
...+ +.+ ++..+|+.|+++||++. +.|+...+ +.+.+.++++++.+++.|.+.. ++++|+. .+...++++
T Consensus 87 ~~~~-~~~-l~~~~g~~~~~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~----~~~vd~~~~~~~~~~~v 159 (476)
T 2fdv_A 87 WVFK-GYG-VVFSNGERAKQLRRFSI-ATLRDFGVGKRGIEERIQEEAGFLIDALRGTG----GANIDPTFFLSRTVSNV 159 (476)
T ss_dssp HHHT-TCS-SSSCCHHHHHHHHHHHH-HHHHHTTTTSHHHHHHHHHHHHHHHHHHHHTT----TCCBCCHHHHHHHHHHH
T ss_pred hhcC-CCC-eEecCchHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHhcC----CCccChHHHHHHHHHHH
Confidence 3322 334 44567999999999875 66765544 6788899999999999997532 1234544 444555666
Q ss_pred HHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc----
Q 022341 186 MYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---- 261 (298)
Q Consensus 186 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---- 261 (298)
|++++||.+++..+ +....+.................+.+++|++..++....+...+. .+....+....++++
T Consensus 160 i~~~~fG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~~~~-~~~~~~~~~~~i~~r~~~~ 237 (476)
T 2fdv_A 160 ISSIVFGDRFDYKD-KEFLSLLRMMLGIFQFTSTSTGQLYEMFSSVMKHLPGPQQQAFQL-LQGLEDFIAKKVEHNQRTL 237 (476)
T ss_dssp HHHHHHSSCCCTTC-HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTSCSHHHHHHHH-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCcCCCCC-HHHHHHHHHHHHHHHhhcccccchhhhhhhHHHhcCcHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 99999999887543 322222221111111111000001245565211111111111111 122333444444322
Q ss_pred ---ccCChHHHHHhhcc------cCCCCHHHHHHHHHHHhhcccCC
Q 022341 262 ---NLKCAIDHILDAQT------KGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 262 ---~~~d~ld~ll~~~~------~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
.++|+++.|+++.. ...+|++++...+.++++||+++
T Consensus 238 ~~~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 283 (476)
T 2fdv_A 238 DPNSPRDFIDSFLIRMQEEEKNPNTEFYLKNLVMTTLNLFIGGTET 283 (476)
T ss_dssp CTTSCCSHHHHHHHHHHHTTTCTTCSCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHhcccc
Confidence 24699999997531 13589999999999999999863
No 13
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=99.96 E-value=2.5e-28 Score=224.06 Aligned_cols=257 Identities=24% Similarity=0.341 Sum_probs=168.0
Q ss_pred CCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhhhhcc
Q 022341 33 LPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTG 112 (298)
Q Consensus 33 ~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~~~~~ 112 (298)
.+|||+++|++||++++... ++..+.+|+++||+||++++|+.++|+++||+++++|+.+++..|++|+.......+.
T Consensus 17 ~~PgP~~~p~~G~~~~~~~~-~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~i~~il~~~~~~f~~r~~~~~~~~~~- 94 (495)
T 2hi4_A 17 SPPEPWGWPLLGHVLTLGKN-PHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPDLYTSTLIT- 94 (495)
T ss_dssp CCCCCCCBTTTBTHHHHTTC-HHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTGGGSCBCCCCHHHHTST-
T ss_pred CCCCCCCCcceeeHHhcCcc-HHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhcchhhCCCCCcHHHHHhc-
Confidence 34999999999999888644 7788999999999999999999999999999999999998877899888654333322
Q ss_pred CCCceEEe-cCChhHHHHhhhhcccccc---hHHH---H---hhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHHH
Q 022341 113 KGQDMVFT-VYGEHWRKMRRIMTVPFFT---NKVV---Q---QQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQLM 181 (298)
Q Consensus 113 ~~~~~~~~-~~g~~Wk~~Rk~~~~~~~~---~~~~---~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~ 181 (298)
.+.+++++ ++|+.|+++||++. +.|+ .... + .+.+.++++++.+++.|.+..+ .++++|+. .+...
T Consensus 95 ~~~~l~~~~~~g~~w~~~Rr~~~-~~f~~~s~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~--~~~~~d~~~~~~~~ 171 (495)
T 2hi4_A 95 DGQSLTFSTDSGPVWAARRRLAQ-NALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQELMA--GPGHFDPYNQVVVS 171 (495)
T ss_dssp TSCCTTTSSCCSHHHHHHHHHHH-HHHHHTTTSBCSSCSSCBHHHHHHHHHHHHHHHHHHHHHH--TTSCBCHHHHHHHH
T ss_pred CCCCEEEcCCCChHHHHHHHHHH-HHHHHhccCcccccchhhhHHHHHHHHHHHHHHHHHHhcc--CCCccchHHHHHHH
Confidence 23344444 47999999999875 4433 2221 2 6888999999999999975221 12345654 45555
Q ss_pred HHHHHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 022341 182 MYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER 261 (298)
Q Consensus 182 ~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 261 (298)
++++|++++||.+++.. ++....+....+.+..... ...+.+++|+++.+.....+...+. .+...++....++++
T Consensus 172 ~~dvi~~~~fG~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~l~~lp~~~~~~~~~~-~~~~~~~~~~~i~~r 247 (495)
T 2hi4_A 172 VANVIGAMCFGQHFPES-SDEMLSLVKNTHEFVETAS--SGNPLDFFPILRYLPNPALQRFKAF-NQRFLWFLQKTVQEH 247 (495)
T ss_dssp HHHHHHHHHHGGGSCTT-CHHHHHHHTTTHHHHTTSS--TTCGGGTCGGGGGSCCHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCC-CHHHHHHHHHHHHHHHhcc--cchHHHHhHHHHhcCchHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 66669999999988643 3322222111111111111 1123466787652211111111111 122333444443322
Q ss_pred -------ccCChHHHHHhhc-c---c-C-CCCHHHHHHHHHHHhhcccCC
Q 022341 262 -------NLKCAIDHILDAQ-T---K-G-EINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 262 -------~~~d~ld~ll~~~-~---~-~-~~t~~~i~~~~~~l~~aG~~~ 298 (298)
..+|+++.|+++. + + + .+|++++..++.++++||+++
T Consensus 248 ~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~dT 297 (495)
T 2hi4_A 248 YQDFDKNSVRDITGALFKHSKKGPRASGNLIPQEKIVNLVNDIFGAGFDT 297 (495)
T ss_dssp HHTCCTTCCCSHHHHHHHHHHHCCEETTEECCTHHHHTHHHHHHHHHHHH
T ss_pred HHhhcccccccHHHHHHHHhhhccCccccCCCHHHHHHHHHHHHHhhhhh
Confidence 2479999999642 1 1 2 589999999999999999864
No 14
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=99.95 E-value=3e-28 Score=220.49 Aligned_cols=251 Identities=17% Similarity=0.230 Sum_probs=173.1
Q ss_pred CCCCCCCC-CccccccccCCCCcchHHHHHHHHHhC-CeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhhh
Q 022341 32 KLPPGPLP-VPVFGNWLQVGDDLNHRNLSDLAKKYG-DVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDI 109 (298)
Q Consensus 32 ~~ppGP~~-~PiiGnl~~l~~~~~~~~~~~~~~~yG-~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~~ 109 (298)
++|||||+ +|++||++++..+ ++..+.+|+++|| +||++++|+.++|+++||+++++++.++...|++|+.......
T Consensus 3 ~~PPg~p~~~P~iG~~~~~~~~-~~~~~~~~~~~yG~~i~~~~~~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~~ 81 (450)
T 3gw9_A 3 KLPPVYPVTVPILGHIIQFGKS-PLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPREVYSFMVP 81 (450)
T ss_dssp SCCCBCCCCSTTTBTHHHHHHC-HHHHHHHHHHHHTCSEEEEEETTEEEEEECCGGGTHHHHSSCTTTEESTGGGGGGHH
T ss_pred CCCCCCCCCcchhccHHHHccC-HHHHHHHHHHHhCCCeEEEEECCEeEEEEeCHHHHHHHHhCChhhccchhhHHHHHH
Confidence 58999776 9999999988644 7788999999999 9999999999999999999999999998888998876555555
Q ss_pred hccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHH-HHhcCcccccCChhhHH-HHHHHHHHHHH
Q 022341 110 FTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVE-DVKKDPEAATNGIVLRR-RLQLMMYNNMY 187 (298)
Q Consensus 110 ~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~~-~~~~~~~~~i~ 187 (298)
+.|.+ ++++.+|+.|+++||++ .+.|+.+.++.+.+.++++++.+++ .|.+.. +.+++. .+...++++|+
T Consensus 82 ~~g~~--~~~~~~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~ll~~~~~~~~-----~~vd~~~~~~~~~~~~i~ 153 (450)
T 3gw9_A 82 VFGEG--VAYAAPYPRMREQLNFL-AEELTIAKFQNFVPAIQHEVRKFMAANWDKDE-----GEINLLEDCSTMIINTAC 153 (450)
T ss_dssp HHCTT--SGGGSCHHHHHHHHHHH-HHTTSGGGCTTHHHHHHHHHHHHHHHHSCSSE-----EEEEHHHHHHHHHHHHHH
T ss_pred HhcCC--cccCCCcHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhccCC-----CcccHHHHHHHHHHHHHH
Confidence 55544 44556799999999987 5888888889999999999999999 664321 235554 44555566699
Q ss_pred HHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHh-------
Q 022341 188 RIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEE------- 260 (298)
Q Consensus 188 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------- 260 (298)
+++||.+++...+ ...+...... +.... ....+++|+++.......+...+. .+...++....+++
T Consensus 154 ~~~fG~~~~~~~~--~~~~~~~~~~---~~~~~-~~~~~~~P~l~~lp~~~~~~~~~~-~~~~~~~~~~~i~~r~~~~~~ 226 (450)
T 3gw9_A 154 QCLFGEDLRKRLD--ARRFAQLLAK---MESSL-IPAAVFLPILLKLPLPQSARCHEA-RTELQKILSEIIIARKEEEVN 226 (450)
T ss_dssp HHHSCHHHHHHSC--HHHHHHHHHH---HHHTC-CGGGGTCGGGGGSCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcchhhhhh--hHHHHHHHHH---HHhcc-ccchhcccchhccCCchhHHHHHH-HHHHHHHHHHHHHHHHHhhcc
Confidence 9999988754222 1112222111 21111 123356776652211111111111 11222222222221
Q ss_pred --cccCChHHHHHhhcc-cC-CCCHHHHHHHHHHHhhcccCC
Q 022341 261 --RNLKCAIDHILDAQT-KG-EINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 261 --~~~~d~ld~ll~~~~-~~-~~t~~~i~~~~~~l~~aG~~~ 298 (298)
....|+++.|+++.. ++ .++++++...+.++++||+++
T Consensus 227 ~~~~~~d~l~~ll~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 268 (450)
T 3gw9_A 227 KDSSTSDLLSGLLSAVYRDGTPMSLHEVCGMIVAAMFAGQHT 268 (450)
T ss_dssp TSCCCCSHHHHHHHCBCTTSCBCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCccchHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhH
Confidence 235799999998753 23 599999999999999999863
No 15
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=99.95 E-value=4.3e-28 Score=220.50 Aligned_cols=248 Identities=17% Similarity=0.241 Sum_probs=170.8
Q ss_pred CCCCCCCC-CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcc-hhhh
Q 022341 32 KLPPGPLP-VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV-VFDI 109 (298)
Q Consensus 32 ~~ppGP~~-~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~-~~~~ 109 (298)
+.||||++ +|+|||++++..+ ++..+.+|+++|||||++++|+.++|+|+||+++++++.+++..|+.|+... ....
T Consensus 11 ~~PP~~~~~lP~iG~~~~~~~~-~~~~~~~~~~kYG~i~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~~~ 89 (461)
T 3ld6_A 11 KSPPYIFSPIPFLGHAIAFGKS-PIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTP 89 (461)
T ss_dssp CCCCBCCCSSTTTBTHHHHHHC-HHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHHHH
T ss_pred CCCCCCCCCcCeeeeHHHhhhC-HHHHHHHHHHHhCCEEEEEECCccEEEEeCHHHHHHHHhCCccccCCCcchhhhhhc
Confidence 46777765 9999999988654 7889999999999999999999999999999999999999988888887433 2233
Q ss_pred hccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHHHHHHHHHHHHHH
Q 022341 110 FTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRI 189 (298)
Q Consensus 110 ~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 189 (298)
..|. +++++.+|+.|+++|+++ .+.|+.+.++.+.+.++++++++++.|.+..+ ......+...++.+++++
T Consensus 90 ~~g~--~~~~~~~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~ 161 (461)
T 3ld6_A 90 VFGK--GVAYDVPNPVFLEQKKML-KSGLNIAHFKQHVSIIEKETKEYFESWGESGE-----KNVFEALSELIILTASHC 161 (461)
T ss_dssp HHCT--TSGGGSCHHHHHHHHHHH-HHHSSHHHHHHHHHHHHHHHHHHGGGGCSEEE-----EEHHHHHHHHHHHHHHHH
T ss_pred cCCC--ccccCCCcHHHHHHHHhc-cccccHHHHhhhhHHHHHHHHHHHHHHhhcCC-----ccHHHHHHHHHHHHHHHH
Confidence 4444 356667899999999987 58889999999999999999999988864321 112334555566679999
Q ss_pred HhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc-----ccC
Q 022341 190 MFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER-----NLK 264 (298)
Q Consensus 190 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~ 264 (298)
+||.++++..++....+ .. .+...+. .....+|.+.+. ..+.+. .+. .+.+.++....++++ ..+
T Consensus 162 ~fG~~~~~~~~~~~~~~---~~---~~~~~~~-~~~~~~~~~~~~-~~~~~~-~~~-~~~l~~~~~~~i~~r~~~~~~~~ 231 (461)
T 3ld6_A 162 LHGKEIRSQLNEKVAQL---YA---DLDGGFS-HAAWLLPGWLPL-PSFRRR-DRA-HREIKDIFYKAIQKRRQSQEKID 231 (461)
T ss_dssp HTCHHHHHTCCHHHHHH---HH---HHHTTSS-HHHHHSCTTSCC-HHHHHH-HHH-HHHHHHHHHHHHHHHTTCCCCCC
T ss_pred HcCcchhhhhhhhhhhh---hh---hhhhhhh-hHHHhhhhhccC-cHHHHH-HHH-HHHHHHHHHHHHHHHHhcCCCCc
Confidence 99988765444332211 11 1212111 111223332221 111111 111 123334444444433 257
Q ss_pred ChHHHHHhhccc-C-CCCHHHHHHHHHHHhhcccCC
Q 022341 265 CAIDHILDAQTK-G-EINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 265 d~ld~ll~~~~~-~-~~t~~~i~~~~~~l~~aG~~~ 298 (298)
|+++.|+++..+ + .+|++++...+.++++||+++
T Consensus 232 d~l~~ll~~~~~~~~~ls~~ei~~~~~~~~~aG~dT 267 (461)
T 3ld6_A 232 DILQTLLDATYKDGRPLTDDEVAGMLIGLLLAGQHT 267 (461)
T ss_dssp SHHHHHHTCBCTTSCBCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHhhhcccCCCCHHHHHHHHHhhhhccccc
Confidence 999999987543 3 599999999999999999863
No 16
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=99.94 E-value=1.5e-25 Score=204.24 Aligned_cols=252 Identities=16% Similarity=0.228 Sum_probs=161.1
Q ss_pred CCCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhh---
Q 022341 32 KLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFD--- 108 (298)
Q Consensus 32 ~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~--- 108 (298)
+.+|||+++|++||++++....++..+.+|+++||+||++++|+.++|+++||+++++|+.++ .|+ ++......
T Consensus 3 ~~~PGP~~~p~iG~l~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~~~~~~~il~~~--~f~-~~~~~~~~~~~ 79 (470)
T 2ij2_A 3 KEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDES--RFD-KNLSQALKFVR 79 (470)
T ss_dssp CCCCCCCCCGGGTTGGGGCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCTT--TEE-ECCCHHHHHHH
T ss_pred CCCCCCCCCCccccHHHHhcccchHHHHHHHHHhCCeEEEecCCccEEEECCHHHHHHHHhhc--CcC-cCchhHHHHHH
Confidence 357999999999999998655577889999999999999999999999999999999999543 353 32212221
Q ss_pred hhccCCCceEEe-cCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHHHHHHHH
Q 022341 109 IFTGKGQDMVFT-VYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQLMMYNNM 186 (298)
Q Consensus 109 ~~~~~~~~~~~~-~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~i 186 (298)
...+.+ ++.+ .+|+.|+++||++. +.|+.+.++.+.+.+.++++++++.|.+..+ ++.+|+. .+...++++|
T Consensus 80 ~~~~~~--l~~~~~~g~~w~~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~---~~~vd~~~~~~~~~~~vi 153 (470)
T 2ij2_A 80 DFAGDG--LFTSWTHEKNWKKAHNILL-PSFSQQAMKGYHAMMVDIAVQLVQKWERLNA---DEHIEVPEDMTRLTLDTI 153 (470)
T ss_dssp HHHTTS--GGGSCTTSHHHHHHHHHHG-GGGSTTTHHHHHHHHHHHHHHHHHHHHTCCT---TCCEEHHHHHHHHHHHHH
T ss_pred HhcCCc--eEEcCCCchHHHHHHHHhc-cccCHHHHHHHHHHHHHHHHHHHHHHHhhCC---CCeEEHHHHHHHHHHHHH
Confidence 222333 3333 48999999999875 7889888899999999999999999975321 2345654 4455566679
Q ss_pred HHHHhccccCCC-CchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc----
Q 022341 187 YRIMFDRRFESQ-DDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---- 261 (298)
Q Consensus 187 ~~~~fG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---- 261 (298)
+.++||.++++. ++........+...+........ ..|++..+.....+...+. .+.+..+....++++
T Consensus 154 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~r~~~~ 227 (470)
T 2ij2_A 154 GLCGFNYRFNSFYRDQPHPFITSMVRALDEAMNKLQ-----RANPDDPAYDENKRQFQED-IKVMNDLVDKIIADRKASG 227 (470)
T ss_dssp HHHHHSCCCCGGGCSSCCHHHHHHHHHHHHHHHTC--------CTTSGGGHHHHHHHHHH-HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCcccccccCCCCHHHHHHHHHHHHHHHHHh-----hhhhHhhccchHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 999999987642 11111122222221111111100 0122211111111111111 122333333334332
Q ss_pred -ccCChHHHHHhhcc--c-CCCCHHHHHHHHHHHhhcccCC
Q 022341 262 -NLKCAIDHILDAQT--K-GEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 262 -~~~d~ld~ll~~~~--~-~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
..+|+++.|++..+ + ..+|++++..++.++++||+++
T Consensus 228 ~~~~dll~~ll~~~~~~~~~~ls~~ei~~~~~~~~~AG~dT 268 (470)
T 2ij2_A 228 EQSDDLLTHMLNGKDPETGEPLDDENIRYQIITFLIAGHET 268 (470)
T ss_dssp CCCSSHHHHHHHCCCTTTCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHhccCcccCCCCCHHHHHHHHHHHHHHhhHH
Confidence 24699999998643 2 3599999999999999999863
No 17
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=99.94 E-value=8.6e-27 Score=211.80 Aligned_cols=251 Identities=17% Similarity=0.232 Sum_probs=167.3
Q ss_pred CCCCCCCCC-CCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcc-
Q 022341 28 GKRFKLPPG-PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV- 105 (298)
Q Consensus 28 ~~~~~~ppG-P~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~- 105 (298)
.++.++||| |+++|++||++++..+ ++..+.+|+++||+||++++|+.++|++++|++++++|.++...|+.++...
T Consensus 7 ~~~~~~PPg~P~~lP~iG~l~~~~~~-~~~~~~~~~~~yG~v~~l~l~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~~~ 85 (461)
T 3i3k_A 7 PAGVKSPPYIFSPIPFLGHAIAFGKS-PIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSR 85 (461)
T ss_dssp ---CCCCCBCCCSSTTTBTHHHHHHC-HHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHH
T ss_pred CCCCCCCCCCCCCCCccccHHhhccC-HHHHHHHHHHHhCCEEEEEecCceEEEEeChHHHHHHHhccccccccchHHHH
Confidence 345678999 8899999999988643 7788999999999999999999999999999999999998877666543221
Q ss_pred hhhhhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHHHHHH
Q 022341 106 VFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQLMMYN 184 (298)
Q Consensus 106 ~~~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~ 184 (298)
....+.|.+ +++..+|+.|+++||++. +.|+.+.++.+.+.++++++.+++.|.+.. .+++. .+...++.
T Consensus 86 ~~~~~~g~g--~~~~~~g~~w~~~Rr~~~-~~f~~~~l~~~~~~~~~~~~~ll~~l~~~~------~~dl~~~~~~~~~~ 156 (461)
T 3i3k_A 86 LTTPVFGKG--VAYDVPNPVFLEQKKMLK-SGLNIAHFKQHVSIIEKETKEYFESWGESG------EKNVFEALSELIIL 156 (461)
T ss_dssp HHHHHHCTT--SGGGSCHHHHHHHHHHHH-HHSSHHHHHHHHHHHHHHHHHHGGGGCSEE------EEEHHHHHHHHHHH
T ss_pred hhhhhcCCe--eeeCCCcHHHHHHHHHHh-hhhCHHHHHHHHHHHHHHHHHHHHHhhhcC------CcCHHHHHHHHHHH
Confidence 223344544 445567999999999875 778888899999999999999999886421 23433 34445556
Q ss_pred HHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcc--
Q 022341 185 NMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERN-- 262 (298)
Q Consensus 185 ~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-- 262 (298)
.+++++||.++....++... ... ..+...+. ....++|...+. ..+.+ ..+. .+...++....++++.
T Consensus 157 ~~~~~~~G~~~~~~~~~~~~---~~~---~~~~~~~~-~~~~~~P~~l~~-~~~~~-~~~~-~~~~~~~~~~~i~~~~~~ 226 (461)
T 3i3k_A 157 TASHCLHGKEIRSQLNEKVA---QLY---ADLDGGFS-HAAWLLPGWLPL-PSFRR-RDRA-HREIKDIFYKAIQKRRQS 226 (461)
T ss_dssp HHHHHHTCHHHHHTCCHHHH---HHH---HHHHTTSS-HHHHHSCTTSCC-HHHHH-HHHH-HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHccHhhhhHHHHHHH---HHH---HHHHhccc-cchhhcccccCC-HHHHH-HHHH-HHHHHHHHHHHHHHHHhc
Confidence 69999999876543333221 111 11111111 011223322211 11111 1111 1233444444444432
Q ss_pred ---cCChHHHHHhhccc-C-CCCHHHHHHHHHHHhhcccCC
Q 022341 263 ---LKCAIDHILDAQTK-G-EINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 263 ---~~d~ld~ll~~~~~-~-~~t~~~i~~~~~~l~~aG~~~ 298 (298)
..|+++.|+++..+ + .+|++++...+.++++||+++
T Consensus 227 ~~~~~d~l~~ll~~~~~~~~~l~~~~i~~~~~~l~~ag~~T 267 (461)
T 3i3k_A 227 QEKIDDILQTLLDATYKDGRPLTDDEVAGMLIGLLLAGQHT 267 (461)
T ss_dssp CCCCCSHHHHHHTCBCTTSCBCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHhhhccCCCCCHHHHHHHHHHHHhhccHH
Confidence 47999999987532 3 599999999999999999863
No 18
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=99.94 E-value=1.4e-25 Score=204.96 Aligned_cols=261 Identities=11% Similarity=0.127 Sum_probs=165.2
Q ss_pred CCCCCCCCCCCCccccccccCCC----CcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCc
Q 022341 29 KRFKLPPGPLPVPVFGNWLQVGD----DLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN 104 (298)
Q Consensus 29 ~~~~~ppGP~~~PiiGnl~~l~~----~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~ 104 (298)
++.+.+|||+++|+. |++++.. ...+..+.+|+++||+||++++|+.++|+++||+++++|+.+++ .|++|+..
T Consensus 6 ~pL~~~PGP~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~kYG~i~~~~~g~~~~vvv~dp~~~~~il~~~~-~f~~r~~~ 83 (487)
T 3n9y_A 6 RPFNEIPSPGDNGWL-NLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSEG-PNPERFLI 83 (487)
T ss_dssp BCGGGSCCSCSCHHH-HHHHHHHHTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHHTCC-SSCCCCCC
T ss_pred CCHhhCCCCCCCChh-hHHHHHhcCCCcchhHHHHHHHHHcCceeeccCCCCCEEEEcCHHHHHHHHHhCC-CCCCCCCC
Confidence 344568999988875 7776521 23567899999999999999999999999999999999997764 78888854
Q ss_pred chh---hhhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccc--cCChhhHH-HH
Q 022341 105 VVF---DIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAA--TNGIVLRR-RL 178 (298)
Q Consensus 105 ~~~---~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~-~~ 178 (298)
... ....+.+. .+++.+|+.|+++||++.+++|+.+.++.+.+.++++++.+++.|.+..+.. ++.++|+. .+
T Consensus 84 ~~~~~~~~~~~~~~-~l~~~~g~~w~~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~ 162 (487)
T 3n9y_A 84 PPWVAYHQYYQRPI-GVLLKKSAAWKKDRVALNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDL 162 (487)
T ss_dssp HHHHHHHHHTTCCC-CGGGCCHHHHHHHHHHHHHHHTSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSSSEEECCHHHH
T ss_pred cHHHHHHHHccccC-CCccCCcHHHHHHHHhcCcccCCchHHHHhhhHHHHHHHHHHHHHHHHhcccccCCCCccHHHHH
Confidence 321 12222232 3567889999999999864479999999999999999999999997532111 12245544 45
Q ss_pred HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCcccccccc-cccc-----chhhHHHHHHHHHHHHHH
Q 022341 179 QLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPI-LRPF-----LRGYLKICKEVKERRLQL 252 (298)
Q Consensus 179 ~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~-l~~~-----~~~~~~~~~~~~~~~~~~ 252 (298)
...++++|++++||.+++..++........+.+.+..+.... ....++|. +..+ .+...+....+ .+....
T Consensus 163 ~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~l~~~~~~~~~~~~~~~~~~~-~~~~~~ 239 (487)
T 3n9y_A 163 FRFAFESITNVIFGERQGMLEEVVNPEAQRFIDAIYQMFHTS--VPMLNLPPDLFRLFRTKTWKDHVAAWDVI-FSKADI 239 (487)
T ss_dssp HHHHHHHHHHHHHSSCCCTTSSSCCHHHHHHHHHHHHHHHHH--GGGTTSCHHHHHHHCHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHhcccccccCCCCChHHHHHHHHHHHHHHHH--HHHHhcCHHHHhhcccHHHHHHHHHHHHH-HHHHHH
Confidence 556667799999999987543221111111111122221111 01133332 1111 11111111100 111111
Q ss_pred HHHHH----HHh----cccCChHHHHHhhcccCCCCHHHHHHHHHHHhhcccCC
Q 022341 253 FKDYF----VEE----RNLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 253 ~~~~~----i~~----~~~~d~ld~ll~~~~~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
..... .+. ....|+++.+++. +.++++++.+++.++++||+++
T Consensus 240 ~i~~~~~~~~~~~~~~~~~~d~l~~ll~~---~~l~~~ei~~~~~~~~~AG~dT 290 (487)
T 3n9y_A 240 YTQNFYWELRQKGSVHHDYRGILYRLLGD---SKMSFEDIKANVTEMLAGGVDT 290 (487)
T ss_dssp HHHHHHHHHHHHCCCCSSCCCHHHHHHHS---CSSCHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHhc---CCCCHHHHHHHHHHHHHHhhhh
Confidence 11111 111 1236899999874 3589999999999999999874
No 19
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=99.93 E-value=3.5e-25 Score=201.03 Aligned_cols=243 Identities=14% Similarity=0.160 Sum_probs=151.0
Q ss_pred CCCCC-CCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhhhh
Q 022341 32 KLPPG-PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIF 110 (298)
Q Consensus 32 ~~ppG-P~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~~~ 110 (298)
++||| |+++|++||++++..+ ++..+.+|+++||+||++++|+.+++++++|+++++++.++...|+.++.......+
T Consensus 4 ~~PPg~p~~~P~iG~~~~~~~~-~~~~~~~l~~~yG~v~~~~~~~~~~~vv~~~~~~~~il~~~~~~~~~~~~~~~~~~~ 82 (455)
T 2cib_A 4 VALPRVSGGHDEHGHLEEFRTD-PIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAYPFMTPI 82 (455)
T ss_dssp -CCCBCSCCCBTTBTHHHHTTC-HHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEECTTSCGGGHHH
T ss_pred CCCCCCCCCCCCccCHHHHhhC-hHHHHHHHHHHcCCEEEEEeCCceEEEECCHHHHHHHHhcCccccCcccchhHHHhh
Confidence 57898 7799999999988644 778899999999999999999999999999999999998877788888754333334
Q ss_pred ccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHHHHHHHHHHH
Q 022341 111 TGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQLMMYNNMYRI 189 (298)
Q Consensus 111 ~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~i~~~ 189 (298)
.|.+ ++ .+|+.|+++|+++ .+.|+.+.++.+.+.++++++.+++.|... +.+|+. .+...++++|+++
T Consensus 83 ~g~~---~~-~~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~~~~~------~~vd~~~~~~~~~~~vi~~~ 151 (455)
T 2cib_A 83 FGEG---VV-FDASPERRKEMLH-NAALRGEQMKGHAATIEDQVRRMIADWGEA------GEIDLLDFFAELTIYTSSAC 151 (455)
T ss_dssp HC-------------------------CCHHHHHHHHHHHHHHHHHHHTTCCSE------EEEEHHHHHHHHHHHHHHHH
T ss_pred cCCc---cc-cCcHHHHHHHhhh-ccccCHHHHHHHHHHHHHHHHHHHHHhCCC------CcEeHHHHHHHHHHHHHHHH
Confidence 4433 33 4699999999987 588999889999999999999999887531 235554 4455556669999
Q ss_pred HhccccCCCCchHHHHHHHHHHHHHhhhhccCCcccccccccc-ccchhhHHHHHHHHHHHHHHHHHHHHHhcc------
Q 022341 190 MFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILR-PFLRGYLKICKEVKERRLQLFKDYFVEERN------ 262 (298)
Q Consensus 190 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------ 262 (298)
+||.+++...++.+ ...... +...+ .....++|++. +..+. ..+. .+....+....++++.
T Consensus 152 ~fG~~~~~~~~~~~---~~~~~~---~~~~~-~~~~~~~p~l~~~~~~~----~~~~-~~~~~~~~~~~i~~r~~~~~~~ 219 (455)
T 2cib_A 152 LIGKKFRDQLDGRF---AKLYHE---LERGT-DPLAYVDPYLPIESFRR----RDEA-RNGLVALVADIMNGRIANPPTD 219 (455)
T ss_dssp HTCHHHHTTCCHHH---HHHHHH---HHTTC-CGGGGTCTTCSCHHHHH----HHHH-HHHHHHHHHHHHHHHHHCC---
T ss_pred HcCCCcchhhhHHH---HHHHHH---HHhhh-hHHHHhcccCCChhHHH----HHHH-HHHHHHHHHHHHHHHHhcccCC
Confidence 99998765333221 111111 11111 11223456542 11111 1111 1223333333333221
Q ss_pred --cCChHHHHHhhcc-cC-C-CCHHHHHHHHHHHhhcccCC
Q 022341 263 --LKCAIDHILDAQT-KG-E-INEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 263 --~~d~ld~ll~~~~-~~-~-~t~~~i~~~~~~l~~aG~~~ 298 (298)
.+|+++.|++... ++ . +|++++...+.++++||+++
T Consensus 220 ~~~~dll~~ll~~~~~~~~~~l~~~~i~~~~~~l~~AG~eT 260 (455)
T 2cib_A 220 KSDRDMLDVLIAVKAETGTPRFSADEITGMFISMMFAGHHT 260 (455)
T ss_dssp --CCCHHHHHHHCBCTTSSBSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHhcccc
Confidence 2399999998643 23 3 99999999999999999863
No 20
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=99.92 E-value=1.3e-24 Score=196.65 Aligned_cols=242 Identities=17% Similarity=0.206 Sum_probs=162.0
Q ss_pred CCCCCCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhh
Q 022341 29 KRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFD 108 (298)
Q Consensus 29 ~~~~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~ 108 (298)
++.+.||||+++|++||++++..+ ++ .+.+++++||+||++++++.+.|+++||+++++|+.++...|+.+.. ....
T Consensus 9 ~~~~~pPgp~~~P~iG~~~~~~~~-~~-~~~~~~~~yg~v~~~~~~g~~~vvv~~~~~~~~il~~~~~~~~~~~~-~~~~ 85 (444)
T 2ve3_A 9 NSLPIPPGDFGLPWLGETLNFLND-GD-FGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQATWP-LSTR 85 (444)
T ss_dssp CCCCCCCCCCCBTTTBTHHHHHHC-TT-HHHHHHHHHCSSEEEEETTEEEEEECSHHHHHHHTSSCTTTEEEECC-HHHH
T ss_pred CCCCCCCCCCCCCccccHHHHhcC-cH-HHHHHHHHcCCeEEEeeCCCCEEEEcCHHHHHHHHhCCCcccccchh-HHHH
Confidence 345689999999999999887544 45 78899999999999998889999999999999999887666764332 1223
Q ss_pred hhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHHHHHHHHH
Q 022341 109 IFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQLMMYNNMY 187 (298)
Q Consensus 109 ~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~i~ 187 (298)
.+.|. .+ ++..+|+.|+++||++ .+.|+.+.++.+.+.++++++.+++.|... +.+|+. .+...++++|+
T Consensus 86 ~~~g~-~~-l~~~~g~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~------~~vd~~~~~~~~~~~vi~ 156 (444)
T 2ve3_A 86 ILLGP-NA-LATQMGEIHRSRRKIL-YQAFLPRTLDSYLPKMDGIVQGYLEQWGKA------NEVIWYPQLRRMTFDVAA 156 (444)
T ss_dssp HHHCT-TS-GGGCCHHHHHHHHHHH-HGGGCHHHHHTTHHHHHHHHHHHHHHHHHS------SEEEHHHHHHHHHHHHHH
T ss_pred HHhCc-cc-cccCCchHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHhcCC------CcEeHHHHHHHHHHHHHH
Confidence 33343 12 4557899999999987 588898889999999999999999998531 235554 44555666799
Q ss_pred HHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc-----c
Q 022341 188 RIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER-----N 262 (298)
Q Consensus 188 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~ 262 (298)
+++|| +.+..++...+.+... ...+ .. +...+|... .+...+. .+...++....++++ .
T Consensus 157 ~~~fG-~~~~~~~~~~~~~~~~---~~~~---~~--~~~~~p~~~--~~~~~~~-----~~~~~~~~~~~i~~r~~~~~~ 220 (444)
T 2ve3_A 157 TLFMG-EKVSQNPQLFPWFETY---IQGL---FS--LPIPLPNTL--FGKSQRA-----RALLLAELEKIIKARQQQPPS 220 (444)
T ss_dssp HHHTC-HHHHSCTTHHHHHHHH---HHHH---SS--CCCCSTTSH--HHHHHHH-----HHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHcC-CCcccHHHHHHHHHHH---HHHH---hc--CCccCCCcH--HHHHHHH-----HHHHHHHHHHHHHHHhcCCCC
Confidence 99999 3332222222111111 1111 11 112334321 1111111 122333444444432 2
Q ss_pred cCChHHHHHhhcc-c-CCCCHHHHHHHHHHHhhcccCC
Q 022341 263 LKCAIDHILDAQT-K-GEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 263 ~~d~ld~ll~~~~-~-~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
.+|+++.|+++.+ + ..+|++++...+.++++||+++
T Consensus 221 ~~d~l~~ll~~~~~~~~~l~~~~i~~~~~~~~~AG~~T 258 (444)
T 2ve3_A 221 EEDALGILLAARDDNNQPLSLPELKDQILLLLFAGHET 258 (444)
T ss_dssp CSSHHHHHHHCBCTTSCBCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHhccccCCCCCCHHHHHHHHHHHHHHcchH
Confidence 5799999998643 2 3599999999999999999863
No 21
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=99.92 E-value=5.2e-25 Score=200.45 Aligned_cols=245 Identities=19% Similarity=0.223 Sum_probs=139.8
Q ss_pred CCCCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCC-cchhhh
Q 022341 31 FKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTR-NVVFDI 109 (298)
Q Consensus 31 ~~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~-~~~~~~ 109 (298)
...||||+++|++||++++..+ ++..+.++++ ||+|+++++|+.++++++||+++++++.++ .|+.++. ......
T Consensus 22 ~eppPgP~~~P~iG~~~~~~~~-p~~~~~~l~~-yGpv~~~~~g~~~~~vv~~~~~i~~il~~~--~~~~~~~~~~~~~~ 97 (467)
T 3dbg_A 22 REPPVAGGGVPLLGHGWRLARD-PLAFMSQLRD-HGDVVRIKLGPKTVYAVTNPELTGALALNP--DYHIAGPLWESLEG 97 (467)
T ss_dssp CBCCEECCCCSTTHHHHHHHHC-HHHHHHHHGG-GCSEEEEEETTEEEEEECSHHHHHHHHHCT--TC------------
T ss_pred CCCCCCCCCCCcccchHHhccC-HHHHHHHHHH-hCCEEEEEeCCccEEEECCHHHHHHHHhCc--CcccccchHHHHHH
Confidence 3468899999999999988654 6778888887 999999999999999999999999999876 6644432 222333
Q ss_pred hcc-CCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHHHHHHHHH
Q 022341 110 FTG-KGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQLMMYNNMY 187 (298)
Q Consensus 110 ~~~-~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~i~ 187 (298)
+.| .+ +++.+|+.|+++||++ .+.|+.+.++.+.+.++++++.+++.|.+. +.+|+. .+...++++|+
T Consensus 98 ~~g~~~---l~~~dg~~h~~~R~~l-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~------~~~d~~~~~~~~~~~vi~ 167 (467)
T 3dbg_A 98 LLGKEG---VATANGPLHRRQRRTI-QPAFRLDAIPAYGPIMEEEAHALTERWQPG------KTVDATSESFRVAVRVAA 167 (467)
T ss_dssp ---------------------CGGG-HHHHSTTTSTTTHHHHHHHHHHHHHHSCTT------SCEEHHHHHHHHHHHHHH
T ss_pred hcCCCC---cccCCcHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHhccC------CcCcHHHHHHHHHHHHHH
Confidence 333 23 5678899999999987 588898889999999999999999998642 234543 44555666799
Q ss_pred HHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCcccccccc--ccccchhhHHHHHHHHHHHHHHHHHHHHHhcc---
Q 022341 188 RIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPI--LRPFLRGYLKICKEVKERRLQLFKDYFVEERN--- 262 (298)
Q Consensus 188 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~--l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--- 262 (298)
+++||.+++. .....+..... .+.... ....++|+ +........+...+. .+....+....+++++
T Consensus 168 ~~~~g~~~~~---~~~~~~~~~~~---~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~r~~~~ 238 (467)
T 3dbg_A 168 RCLLRGQYMD---ERAERLCVALA---TVFRGM--YRRMVVPLGPLYRLPLPANRRFNDA-LADLHLLVDEIIAERRASG 238 (467)
T ss_dssp HHHSCSSCCH---HHHHHHHHHHH---HHHHC--------------------------CC-HHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCcccc---hhHHHHHHHHH---HHHHHH--HHHhccchhhhhhCCChHhHHHHHH-HHHHHHHHHHHHHHHHhcC
Confidence 9999987653 11122222211 111111 01122332 110000000001000 1123333444444332
Q ss_pred --cCChHHHHHhhccc-C-CCCHHHHHHHHHHHhhcccCC
Q 022341 263 --LKCAIDHILDAQTK-G-EINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 263 --~~d~ld~ll~~~~~-~-~~t~~~i~~~~~~l~~aG~~~ 298 (298)
..|+++.|+++.++ + .+|++++...+.++++||+++
T Consensus 239 ~~~~dll~~ll~~~~~~~~~ls~~ei~~~~~~l~~AG~eT 278 (467)
T 3dbg_A 239 QKPDDLLTALLEAKDDNGDPIGEQEIHDQVVAILTPGSET 278 (467)
T ss_dssp SSCCSHHHHHTTC--------CHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHhHHH
Confidence 46999999986533 2 599999999999999999863
No 22
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=99.91 E-value=5.6e-25 Score=201.42 Aligned_cols=256 Identities=11% Similarity=0.075 Sum_probs=164.0
Q ss_pred CCCCCCCCCCCC-CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcC-ccccCCCCcc
Q 022341 28 GKRFKLPPGPLP-VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQG-VEFGSRTRNV 105 (298)
Q Consensus 28 ~~~~~~ppGP~~-~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~-~~f~~r~~~~ 105 (298)
+++.++||||++ +|++||++++..+ ++..+.+++++||+||++++|+.++++|++|++++++|.++. ..|++++..
T Consensus 9 ~~~~~~PPgp~~~lPliG~~~~~~~~-p~~~~~~l~~~yGpv~~~~lg~~~~vvv~~p~~v~~vl~~~~~~~~~~~~~~- 86 (491)
T 3v8d_A 9 RRQTGEPPLENGLIPYLGCALQFGAN-PLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFA- 86 (491)
T ss_dssp CCCTTSCCEEEEEESSTTTTGGGTCC-HHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHSCCTTEESSHHHHH-
T ss_pred ccCCCCCCCCCCCcceeccHHHHhcC-HHHHHHHHHHHcCCceEEEECCEEEEEEcCHHHHHHHHhcCCccchHHHHHH-
Confidence 444578999999 6999999999654 888999999999999999999999999999999999996654 234433322
Q ss_pred hhhhhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccc-cCChhhHHHH-HHHHH
Q 022341 106 VFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAA-TNGIVLRRRL-QLMMY 183 (298)
Q Consensus 106 ~~~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~-~~~~~ 183 (298)
....+.|.+ .+...+|+.|+++||.+ .++|+.+.++.+.+.+.+++..+++.+....... .....++... ...++
T Consensus 87 ~~~~~~g~~--~~~~~~g~~~~~~Rr~~-~~~f~~~~l~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~ 163 (491)
T 3v8d_A 87 LSAKAFGHR--SIDPMDGNTTENINDTF-IKTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMF 163 (491)
T ss_dssp HHHHHHTCC--CCCGGGSSBCCCHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHSCCSSCGGGGCSCEEEEHHHHHHHHHH
T ss_pred HHHHhcCCc--ccccccchhHHHHHHHH-HHHcCccchHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCHHHHHHHHHH
Confidence 223344433 23446799999999976 5888999999999999999999988654322110 1122344443 34445
Q ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccc-cchhhHHHHHHHHHHHHHHHHHHHHHhc-
Q 022341 184 NNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRP-FLRGYLKICKEVKERRLQLFKDYFVEER- 261 (298)
Q Consensus 184 ~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~- 261 (298)
..++.++||.+.... +.....+....+.+..+ .+.+|.+.. ......+...+.. +++.++....++++
T Consensus 164 ~~~~~~~fG~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~p~~~~~~~~~a~-~~l~~~~~~~~~~~~ 233 (491)
T 3v8d_A 164 EAGYLTIFGRDLTRR-DTQKAHILNNLDNFKQF--------DKVFPALVAGLPIHMFRTAHNAR-EKLAESLRHENLQKR 233 (491)
T ss_dssp HHHHHHHHCBCCSCG-GGHHHHHHHHHHHHHHH--------HHHHHHHHTTCCGGGCHHHHHHH-HHHHHHTSHHHHTTC
T ss_pred HHHHHHHcCcccccc-chhhhhhHHHHHHHHHH--------HHHHHHHHhcCChHHHHHHHHHH-HHHHHHHHHHHHhcc
Confidence 569999999886542 22222222222222111 223332210 0000011111111 12222222333332
Q ss_pred -ccCChHHHHHhhcc-cCCCCHHHHHHHHHHHhhcccCC
Q 022341 262 -NLKCAIDHILDAQT-KGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 262 -~~~d~ld~ll~~~~-~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
...|+++.+++..+ .+.++++++...+..+++||+++
T Consensus 234 ~~~~d~l~~l~~~~~~~~~~~~~ei~~~~~~~~~ag~~t 272 (491)
T 3v8d_A 234 ESISELISLRMFLNDTLSTFDDLEKAKTHLVVLWASQAN 272 (491)
T ss_dssp BSCCHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHhhccCCCchHHHHHHHHHHHHHhHHH
Confidence 35789999987643 34699999999999999999875
No 23
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=99.90 E-value=7.1e-23 Score=184.87 Aligned_cols=229 Identities=13% Similarity=0.149 Sum_probs=148.6
Q ss_pred CCCCCCCCCCccccccc-cCCCCcchHHHHHHHHHhCCeEEEee-CCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhh
Q 022341 31 FKLPPGPLPVPVFGNWL-QVGDDLNHRNLSDLAKKYGDVLLLRM-GQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFD 108 (298)
Q Consensus 31 ~~~ppGP~~~PiiGnl~-~l~~~~~~~~~~~~~~~yG~i~~~~~-g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~ 108 (298)
++.||||+++|++||+. .+..+ ++..+.++ ++||||+++++ |+.++|+++||+++++||.++ .|++++......
T Consensus 25 ~~~~PGP~~~p~lG~~~~~~~~~-p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~ 100 (436)
T 2cd8_A 25 QQGTTASPPVLDLGALGQDFAAD-PYPTYARL-RAEGPAHRVRTPEGDEVWLVVGYDRARAVLADP--RFSKDWRNSTTP 100 (436)
T ss_dssp ---------CCBHHHHHHHHHHC-CHHHHHHH-HTTCSEEEEECSSCCEEEEECSHHHHHHHHHCT--TEECCGGGCSSC
T ss_pred ccCCCCCCccccCCCCCcccccC-hHHHHHHH-HHhCCeeeeccCCCCeEEEEcCHHHHHHHHcCC--CCcccccccccc
Confidence 35689999999999986 33333 67889999 89999999998 889999999999999999876 688776421111
Q ss_pred -----hhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHH-HHH-H
Q 022341 109 -----IFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRR-LQL-M 181 (298)
Q Consensus 109 -----~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~-~ 181 (298)
...+ .+ ++..+|+.|+++||++ .+.|+++.++.+.+.++++++++++.|.+.. ++.+|+.. +.. .
T Consensus 101 ~~~~~~~~~--~~-l~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~----~~~vd~~~~~~~~~ 172 (436)
T 2cd8_A 101 LTEAEAALN--HN-MLESDPPRHTRLRKLV-AREFTMRRVELLRPRVQEIVDGLVDAMLAAP----DGRADLMESLAWPL 172 (436)
T ss_dssp CCTTGGGTC--CS-GGGCCTTHHHHHHHHH-GGGSSHHHHHTTHHHHHHHHHHHHHHHHTCT----TSCEEHHHHTTTHH
T ss_pred ccccccccc--cc-ccccCchHHHHHHHHh-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhcc----CCCcchHHHHHHHH
Confidence 1122 23 5567899999999987 5889999999999999999999999997421 22456544 433 4
Q ss_pred HHHHHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 022341 182 MYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER 261 (298)
Q Consensus 182 ~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 261 (298)
++++|+. +||.+.+. .. .+....+ .+... . -| +...+. .+.+..+....++++
T Consensus 173 ~~~vi~~-~~G~~~~~--~~---~~~~~~~---~~~~~-----~--~~------~~~~~~-----~~~~~~~~~~~i~~r 225 (436)
T 2cd8_A 173 PITVISE-LLGVPEPD--RA---AFRVWTD---AFVFP-----D--DP------AQAQTA-----MAEMSGYLSRLIDSK 225 (436)
T ss_dssp HHHHHHH-HHTCCGGG--HH---HHHHHHH---HHHSC-----S--ST------THHHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhCCCHHH--HH---HHHHHHH---HHhcc-----C--CH------HHHHHH-----HHHHHHHHHHHHHHH
Confidence 4555776 79986531 11 1221111 11110 0 01 111111 122334444444443
Q ss_pred c---cCChHHHHHhhccc--CCCCHHHHHHHHHHHhhcccCC
Q 022341 262 N---LKCAIDHILDAQTK--GEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 262 ~---~~d~ld~ll~~~~~--~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
+ .+|+++.|+++..+ ..+|++++...+.++++||+++
T Consensus 226 ~~~~~~d~l~~ll~~~~~~~~~ls~~ei~~~~~~l~~AG~eT 267 (436)
T 2cd8_A 226 RGQDGEDLLSALVRTSDEDGSRLTSEELLGMAHILLVAGHET 267 (436)
T ss_dssp TTSCCCSHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHTTHHH
T ss_pred hcCCCCCHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHhhHH
Confidence 2 46999999986533 3699999999999999999863
No 24
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Probab=99.88 E-value=1.3e-21 Score=174.76 Aligned_cols=233 Identities=15% Similarity=0.127 Sum_probs=148.4
Q ss_pred CCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeC-CeeEEEeCCHHHHHHHHHhcC-ccccCCCCcchhhh-
Q 022341 33 LPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG-QRNLVVVSSPDHAKEVLHTQG-VEFGSRTRNVVFDI- 109 (298)
Q Consensus 33 ~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g-~~~~vvi~~p~~i~evl~~~~-~~f~~r~~~~~~~~- 109 (298)
+||||+++|++||+.+ + ++..+.+|+ +||||++++++ +.+.++++++++++++|.++. ..+++|+.......
T Consensus 2 ~pPGp~~~P~~g~~~~---~-p~~~~~~l~-~~Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~~~~~~~~r~~~~~~~~~ 76 (404)
T 1jfb_A 2 MASGAPSFPFSRASGP---E-PPAEFAKLR-ATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELSAS 76 (404)
T ss_dssp ----CCBSSCCCSSTT---S-CCTHHHHHH-HHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCSHH
T ss_pred CCCCCCCCCCCCCcCC---C-ccHHHHHHH-HhCCeeeeecCCCCceEEEecHHHHHHHHcCCcccccccccCCcccccc
Confidence 5899999999999875 2 777888886 69999999864 456667899999999998764 34555654322111
Q ss_pred --hccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHHHHHHHH
Q 022341 110 --FTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQLMMYNNM 186 (298)
Q Consensus 110 --~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~i 186 (298)
....+...++..+|+.|+++||++ .+.|+.+.++.+.+.++++++++++.|.+..+. ++++|+. .+...+.+.|
T Consensus 77 ~~~~~~~~~~l~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~--~~~~d~~~~~~~~~~~~i 153 (404)
T 1jfb_A 77 GKQAAKAKPTFVDMDPPEHMHQRSMV-EPTFTPEAVKNLQPYIQRTVDDLLEQMKQKGCA--NGPVDLVKEFALPVPSYI 153 (404)
T ss_dssp HHHHTTSCCCGGGCCTTHHHHHHTTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHHHCST--TSCEEHHHHTTTHHHHHH
T ss_pred ccchhcccCcccccCchhHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCccHHHHHHHHHHHHH
Confidence 011111235567899999999987 588999999999999999999999999753211 2345543 4444455668
Q ss_pred HHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc---cc
Q 022341 187 YRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---NL 263 (298)
Q Consensus 187 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~ 263 (298)
+..+||.+.+. .+ .+..... ... .+.|. .+...+.. +....+....++++ ..
T Consensus 154 ~~~~~G~~~~~--~~---~~~~~~~----~~~-------~~~~~----~~~~~~~~-----~~~~~~~~~~i~~r~~~~~ 208 (404)
T 1jfb_A 154 IYTLLGVPFND--LE---YLTQQNA----IRT-------NGSST----AREASAAN-----QELLDYLAILVEQRLVEPK 208 (404)
T ss_dssp HHHHHTCCGGG--HH---HHHHHHH----HHH-------CTTSC----HHHHHHHH-----HHHHHHHHHHHHHHHHSCC
T ss_pred HHHHcCCCHHH--HH---HHHHHHH----HHh-------ccCcc----hHHHHHHH-----HHHHHHHHHHHHHHHhCCC
Confidence 88999986532 11 1221111 110 01111 11111111 12233333333332 25
Q ss_pred CChHHHHHhhc-ccCCCCHHHHHHHHHHHhhcccCC
Q 022341 264 KCAIDHILDAQ-TKGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 264 ~d~ld~ll~~~-~~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
+|+++.|+++. +++.+|++++...+.++++||+++
T Consensus 209 ~d~l~~ll~~~~~~~~l~~~ei~~~~~~l~~AG~eT 244 (404)
T 1jfb_A 209 DDIISKLCTEQVKPGNIDKSDAVQIAFLLLVAGNAT 244 (404)
T ss_dssp SSHHHHHHHHTTTTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhhhh
Confidence 79999999653 334699999999999999999864
No 25
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=99.88 E-value=1.1e-22 Score=186.14 Aligned_cols=255 Identities=12% Similarity=0.105 Sum_probs=149.1
Q ss_pred CCCCCCCCCC-CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcc-hh
Q 022341 30 RFKLPPGPLP-VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV-VF 107 (298)
Q Consensus 30 ~~~~ppGP~~-~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~-~~ 107 (298)
..+.||||++ +|++||++++..+ ++..+.+|+++||+||++++|+.++||++||+++++++.++.. ++.++... ..
T Consensus 11 ~~~~pPgp~~~~P~iG~~~~~~~~-~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dp~~~~~il~~~~~-~~~~~~~~~~~ 88 (491)
T 3dax_A 11 QTGEPPLENGLIPYLGCALQFGAN-PLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKY-FDWKKFHFATS 88 (491)
T ss_dssp CTTCCCEEEEEESCTTTTGGGTCC-HHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGTHHHHSCCTT-EESSHHHHHHH
T ss_pred CCCCCCcCCCcccchhhHHHHhhC-HHHHHHHHHHhcCCeEEEEECCeEEEEEcChHHHHHHHcCCcc-CChHHHHHHHH
Confidence 3467899998 8999999998654 7788999999999999999999999999999999999976542 22232211 22
Q ss_pred hhhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCc-ccccCChhhHHHHHH-HHHHH
Q 022341 108 DIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDP-EAATNGIVLRRRLQL-MMYNN 185 (298)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~-~~~~~ 185 (298)
....|.+ ++...+|+.|+++|+.+. +.|+.+.++.+.+.+.+++..+++...... +......+++..... .++..
T Consensus 89 ~~~~g~~--~~~~~~g~~w~~~r~~~~-~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ 165 (491)
T 3dax_A 89 AKAFGHR--SIDPMDGNTTENINDTFI-KTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFEA 165 (491)
T ss_dssp HHHHTCC--CCCGGGTSBCCCHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHC----------CCEEEEHHHHHHHHHHHH
T ss_pred HHHcCCC--cccccchhHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHhhccCCcCCCCceeccHHHHHHHHHHHH
Confidence 2233433 221567899999999875 577777777777766666666665443211 000111234444333 34455
Q ss_pred HHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccc-cchhhHHHHHHHHHHHHHHHHHHHHHhc-cc
Q 022341 186 MYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRP-FLRGYLKICKEVKERRLQLFKDYFVEER-NL 263 (298)
Q Consensus 186 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~ 263 (298)
+++++||.+.+.. +...+.+..+.+.+..+ .+++|++.. ......+...+...+..+.+.....+++ ..
T Consensus 166 ~~~~~fG~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~p~l~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (491)
T 3dax_A 166 GYLTIFGRDLTRR-DTQKAHILNNLDNFKQF--------DKVFPALVAGLPIHMFRTAHNAREKLAESLRHENLQKRESI 236 (491)
T ss_dssp HHHHHHCBCSTTG-GGHHHHHHHHHHHHHHH--------HHHHHHHHTTCCGGGSHHHHHHHHHHHHHTSHHHHTTCBSC
T ss_pred hHHHHcCcccccc-cchhhhhhHHHHHHHHH--------HHHhHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHhhcccch
Confidence 8888999876542 22222222222211111 233443221 0000011111111111111112222222 35
Q ss_pred CChHHHHHhhcc-cCCCCHHHHHHHHHHHhhcccCC
Q 022341 264 KCAIDHILDAQT-KGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 264 ~d~ld~ll~~~~-~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
.|+++.+++..+ .+.++++++.+.+.++++||+++
T Consensus 237 ~d~l~~ll~~~~~~~~~~~~~i~~~~~~~~~ag~~t 272 (491)
T 3dax_A 237 SELISLRMFLNDTLSTFDDLEKAKTHLVVLWASQAN 272 (491)
T ss_dssp CHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhccc
Confidence 799999987532 34689999999999999999874
No 26
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=99.87 E-value=4.1e-21 Score=174.04 Aligned_cols=231 Identities=21% Similarity=0.288 Sum_probs=147.6
Q ss_pred cchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcc-hhhhhcc---CCCceEEecCChhHHH
Q 022341 53 LNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV-VFDIFTG---KGQDMVFTVYGEHWRK 128 (298)
Q Consensus 53 ~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~-~~~~~~~---~~~~~~~~~~g~~Wk~ 128 (298)
.++..+.+|+++|||||++++|+.++|+++||++++++|.++ .|+.++... ......+ .|.+++++.+|+.|++
T Consensus 11 ~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~p~~~~~il~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~w~~ 88 (456)
T 3mdm_A 11 VLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMST--KYNKDSKMYRALQTVFGERLFGQGLVSECNYERWHK 88 (456)
T ss_dssp CHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTCT--TSCCCHHHHHHHHEETTEESSTTSTTTCCCHHHHHH
T ss_pred hHHHHHHHHHHHhCCeEEEEeCCCCEEEECCHHHHHHHHhhc--cccccchhHHHHHHhhcccccCCCcccCCChHHHHH
Confidence 467889999999999999999999999999999999999643 455544321 1111111 1334445568999999
Q ss_pred HhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHHH-HHHHHHHHHHHHhccccCCCC---chHHH
Q 022341 129 MRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRL-QLMMYNNMYRIMFDRRFESQD---DPLFN 204 (298)
Q Consensus 129 ~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~fG~~~~~~~---~~~~~ 204 (298)
+||++ .+.|+.+.++.+.+.++++++.+++.|.+..+ .+.++++... ...++++|++++||.+++... ++...
T Consensus 89 ~Rr~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~--~~~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~ 165 (456)
T 3mdm_A 89 QRRVI-DLAFSRSSLVSLMETFNEKAEQLVEILEAKAD--GQTPVSMQDMLTYTAMDILAKAAFGMETSMLLGAQKPLSQ 165 (456)
T ss_dssp HHHHH-GGGGSHHHHHTTHHHHHHHHHHHHHHHHHTCS--SSSCEEHHHHHHHHHHHHHHHHHHSCCCCGGGTCCHHHHH
T ss_pred HHhhc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCeeeHHHHHHHHHHHHHHHHHcCCChhhhcccccHHHH
Confidence 99987 58899999999999999999999999976532 2335666554 445566699999999886532 22222
Q ss_pred HHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc---------ccCChHHHHHhhcc
Q 022341 205 RLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---------NLKCAIDHILDAQT 275 (298)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---------~~~d~ld~ll~~~~ 275 (298)
.+..+...+.... .++..++|......+. ..+. .+....+....++++ .+.|+++.++++.
T Consensus 166 ~~~~~~~~~~~~~----~~~~~~~p~~~~~~~~----~~~~-~~~~~~~~~~~i~~r~~~~~~~~~~~~d~l~~ll~~~- 235 (456)
T 3mdm_A 166 AVKLMLEGITASR----NTLAKFLPGKRKQLRE----VRES-IRFLRQVGRDWVQRRREALKRGEEVPADILTQILKAE- 235 (456)
T ss_dssp HHHHHHHHHHHHH----HSCGGGCGGGHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHT-
T ss_pred HHHHHHHHHHHHH----HHHHHhCchhHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHhc-
Confidence 2222222111110 1122344432111111 1111 011222222222211 2569999999864
Q ss_pred cCCCCHHHHHHHHHHHhhcccCC
Q 022341 276 KGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 276 ~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
++.++++++.+.+.++++||+++
T Consensus 236 ~~~~~~~~l~~~~~~l~~AG~dT 258 (456)
T 3mdm_A 236 EGAQDDEGLLDNFVTFFIAGHET 258 (456)
T ss_dssp SSCSSSHHHHHHHHHHHHHTTHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999864
No 27
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1
Probab=99.87 E-value=2.8e-21 Score=174.04 Aligned_cols=245 Identities=10% Similarity=0.075 Sum_probs=155.0
Q ss_pred CCCCCCCCCCCccccccccCC---C-CcchHHHHHHHHHhCCeEEEee-CCeeEEEeCCHHHHHHHHHhcCccccCCCC-
Q 022341 30 RFKLPPGPLPVPVFGNWLQVG---D-DLNHRNLSDLAKKYGDVLLLRM-GQRNLVVVSSPDHAKEVLHTQGVEFGSRTR- 103 (298)
Q Consensus 30 ~~~~ppGP~~~PiiGnl~~l~---~-~~~~~~~~~~~~~yG~i~~~~~-g~~~~vvi~~p~~i~evl~~~~~~f~~r~~- 103 (298)
+.++||| ++|++.+.. . ..++..+.++++ ||||+++++ |+.++++++++++|+++|.+ ...|++|+.
T Consensus 4 ~~~~pp~-----~~g~l~~~~~~~~~~~p~~~~~~l~~-~gpv~~~~~~g~~~~vvv~~~~~v~~vl~~-~~~fs~r~~~ 76 (428)
T 1cpt_A 4 RATIPEH-----IARTVILPQGYADDEVIYPAFKWLRD-EQPLAMAHIEGYDPMWIATKHADVMQIGKQ-PGLFSNAEGS 76 (428)
T ss_dssp TCCSCHH-----HHHHHHSSGGGGCHHHHHHHHHHHHH-HCSEEEECCTTSCCEEEECSHHHHHHHHHC-TTTEESSSSC
T ss_pred ccccchh-----hhcccCChhhhcccCCccHHHHHHHH-hCCeeeccccCCCCeEEEccHHHHHHHHcC-chhccCcccc
Confidence 3467787 899876542 1 125677888876 799999998 78999999999999999965 457998875
Q ss_pred cchh---h-h-h---ccC---CCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCCh
Q 022341 104 NVVF---D-I-F---TGK---GQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGI 172 (298)
Q Consensus 104 ~~~~---~-~-~---~~~---~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 172 (298)
.... . . + .|. ....++..+|+.|+++||++ .+.|+.+.++.+.+.++++++.+++.|.+.. +.
T Consensus 77 ~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~g~~~~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~-----~~ 150 (428)
T 1cpt_A 77 EILYDQNNEAFMRSISGGCPHVIDSLTSMDPPTHTAYRGLT-LNWFQPASIRKLEENIRRIAQASVQRLLDFD-----GE 150 (428)
T ss_dssp SSCCCHHHHHHHHHHTTTSSCSSCCGGGCCTTHHHHHHHHH-HTTSSHHHHGGGHHHHHHHHHHHHHHHHTSS-----SE
T ss_pred ccCCcccccchhccccccccccccccccCChHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHHhC-----CC
Confidence 3221 1 2 2 331 11235567899999999987 5889999999999999999999999997531 23
Q ss_pred hhHH-HHHH-HHHHHHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHH
Q 022341 173 VLRR-RLQL-MMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRL 250 (298)
Q Consensus 173 ~~~~-~~~~-~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~ 250 (298)
+|+. .+.. .++++|+++ ||.+.+. . ..+... ...+.... .+....+|++........+...+. .+.+
T Consensus 151 ~d~~~~~~~~~~~~vi~~~-fG~~~~~--~---~~~~~~---~~~~~~~~-~~~~~~~P~l~~~~~~~~~~~~~~-~~~~ 219 (428)
T 1cpt_A 151 CDFMTDCALYYPLHVVMTA-LGVPEDD--E---PLMLKL---TQDFFGVH-EPDEQAVAAPRQSADEAARRFHET-IATF 219 (428)
T ss_dssp EEHHHHTTTTHHHHHHHHH-HTCCGGG--H---HHHHHH---HHTTTCC-----------------CHHHHHHHH-HHHH
T ss_pred eehHHHHHhhhHHHHHHHH-cCCCHhH--H---HHHHHH---HHHHHhcc-cccccccccccccchhhHHHHHHH-HHHH
Confidence 5553 4443 556679998 9986542 1 112211 11222111 111133455431100111111111 1234
Q ss_pred HHHHHHHHHhcc---cCChHHHHHhhcccC-CCCHHHHHHHHHHHhhcccCC
Q 022341 251 QLFKDYFVEERN---LKCAIDHILDAQTKG-EINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 251 ~~~~~~~i~~~~---~~d~ld~ll~~~~~~-~~t~~~i~~~~~~l~~aG~~~ 298 (298)
..+....+++++ .+|+++.|+++..++ .+|++++...+.++++||+++
T Consensus 220 ~~~~~~~i~~r~~~~~~dll~~ll~~~~~~~~ls~~ei~~~~~~l~~AG~eT 271 (428)
T 1cpt_A 220 YDYFNGFTVDRRSCPKDDVMSLLANSKLDGNYIDDKYINAYYVAIATAGHDT 271 (428)
T ss_dssp HHHHHHHHHHHTTSCCSSHHHHHHHCBSSSSBCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 445555555543 469999999875444 599999999999999999864
No 28
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=99.87 E-value=1.3e-21 Score=179.42 Aligned_cols=255 Identities=13% Similarity=0.054 Sum_probs=146.1
Q ss_pred cCCCCCCCCCCCC-CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcc
Q 022341 27 RGKRFKLPPGPLP-VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV 105 (298)
Q Consensus 27 ~~~~~~~ppGP~~-~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~ 105 (298)
+++..+.||||++ +|++||++++..+ ++..+.+|+++||+||++++|+.++||++||+++++++.++...++.++...
T Consensus 13 ~~~~~~~PPgp~~~~P~iG~~~~~~~~-~~~~~~~l~~kYG~i~~v~lg~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~ 91 (498)
T 3b6h_A 13 RTRRPGEPPLDLGSIPWLGYALDFGKD-AASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFHAYAI 91 (498)
T ss_dssp CCCCTTCCCEECCSSTTTBTHHHHHHC-HHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHTCCTTTEECCHHHH
T ss_pred hccCCCCCCCCCCCCcchhhHHHhccC-HHHHHHHHHHHcCCeEEEEECCeeEEEEcCHHHHHHHHhCccccCCchhhHH
Confidence 3444578999998 8999999988543 7888999999999999999999999999999999999977654344444321
Q ss_pred -hhhhhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHHHHH-HHH
Q 022341 106 -VFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQL-MMY 183 (298)
Q Consensus 106 -~~~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~ 183 (298)
......|.+ ++..+|+.|++.++ +.|+.+.++.+.+.+.+++...++....... .....+++..... .++
T Consensus 92 ~~~~~~~g~~---~~~~~~~~~rr~~~----~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~l~~~~~~vi~ 163 (498)
T 3b6h_A 92 FLMERIFDVQ---LPHYSPSDEKARMK----LTLLHRELQALTEAMYTNLHAVLLGDATEAG-SGWHEMGLLDFSYSFLL 163 (498)
T ss_dssp HHHHHTSCCC---CTTCCHHHHHHHHH----TTSSHHHHHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEEHHHHHHHHHH
T ss_pred HHHHHHcCCC---ccccCHHHHHHHHH----HhhchHhHHHHHHHHHHHHHHHHhhcccccC-CCcceecHHHHHHHHHH
Confidence 222334433 33556777754333 4667777777766666666666655432100 0111234433333 344
Q ss_pred HHHHHHHhccccCCCCchHHH--HHHHHHHHHHhhhhccCCcccccccccc-ccchh-hHHHHHHHHHHHHHH-HHHHHH
Q 022341 184 NNMYRIMFDRRFESQDDPLFN--RLKALNGERSRLAQSFEYNYGDFIPILR-PFLRG-YLKICKEVKERRLQL-FKDYFV 258 (298)
Q Consensus 184 ~~i~~~~fG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~p~l~-~~~~~-~~~~~~~~~~~~~~~-~~~~~i 258 (298)
..+++++||.+++..+ .... ......+....+. .+.+++|++. .+... ..+...+.. +...+ +.....
T Consensus 164 ~~~~~~~fG~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~p~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 236 (498)
T 3b6h_A 164 RAGYLTLYGIEALPRT-HESQAQDRVHSADVFHTFR-----QLDRLLPKLARGSLSVGDKDHMCSVK-SRLWKLLSPARL 236 (498)
T ss_dssp HHHHHHHHCBSCSSCC-HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHTCCCHHHHHHHHHHH-HHHHHHTCHHHH
T ss_pred HHHHHhhcCccccccc-ccchhhHHHhhHHHHHHHH-----HHHhhHHHHHHHhcCchhhHHHHHHH-HHHHHHHHHHHH
Confidence 4578888999875432 2110 1111111111110 1224555432 11111 011111111 11111 111111
Q ss_pred Hh-cccCChHHHHHhhcc-cCCCCHHHHHHHHHHHhhcccCC
Q 022341 259 EE-RNLKCAIDHILDAQT-KGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 259 ~~-~~~~d~ld~ll~~~~-~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
++ ....|+++.+++..+ ++.++++++. .+.++++||+++
T Consensus 237 ~~~~~~~d~l~~ll~~~~~~~~~~~~~~~-~~~~~l~ag~~t 277 (498)
T 3b6h_A 237 ARRAHRSKWLESYLLHLEEMGVSEEMQAR-ALVLQLWATQGN 277 (498)
T ss_dssp TTCBSCCHHHHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHTT
T ss_pred hccccHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHhhhc
Confidence 22 235799999997643 3457888888 777888898764
No 29
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=99.86 E-value=4.3e-22 Score=177.11 Aligned_cols=147 Identities=16% Similarity=0.215 Sum_probs=117.7
Q ss_pred CCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCC-CcchhhhhccC
Q 022341 35 PGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRT-RNVVFDIFTGK 113 (298)
Q Consensus 35 pGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~-~~~~~~~~~~~ 113 (298)
|+++.+|++||++++..+ ++..+.+|+++||||++ ++|+.++++++||+++++++.++ .|++++ .......+.+.
T Consensus 2 ~~~~~~p~iGnl~~~~~~-p~~~~~~l~~~yGpv~~-~~g~~~~vvv~~~~~i~~il~~~--~f~~~~~~~~~~~~~~g~ 77 (389)
T 1n97_A 2 KRLSLREAWPYLKDLQQD-PLAVLLAWGRAHPRLFL-PLPRFPLALIFDPEGVEGALLAE--GTTKATFQYRALSRLTGR 77 (389)
T ss_dssp EECCHHHHHHHHHHHHHC-HHHHHHHHHHHCSEEEE-CCTTCCEEEECSHHHHHHHHHCT--TEECCSHHHHHHHHHHCS
T ss_pred cccccccccccHHHHhhC-hHHHHHHHHHHcCCeeE-ecCCccEEEECCHHHHHHHHhcC--CCCCChhHHHHHHHHhCC
Confidence 466789999999988544 77889999999999999 99999999999999999999877 788876 32233344443
Q ss_pred CCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHHHHHHHHHHHHhc
Q 022341 114 GQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQLMMYNNMYRIMFD 192 (298)
Q Consensus 114 ~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~fG 192 (298)
+ ++..+|+.|+++||++ .+.|+++.++.+.+.++++++.+++.|. . +++|+. .+...++++|++++||
T Consensus 78 ~---l~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~-~------~~~dl~~~~~~~~~~vi~~~~fG 146 (389)
T 1n97_A 78 G---LLTDWGESWKEARKAL-KDPFLPKNVRGYREAMEEEARAFFGEWR-G------EERDLDHEMLALSLRLLGRALFG 146 (389)
T ss_dssp S---TTTCCHHHHHHHHHHH-CGGGSHHHHHTTHHHHHHHHHHHHHTCC-S------CCEEHHHHHHHHHHHHHHHHHHS
T ss_pred c---cccCCcHHHHHHHHHh-CcccCHHHHHHHHHHHHHHHHHHHHHcc-C------CcCcHHHHHHHHHHHHHHHHHcC
Confidence 3 4567899999999987 5889999999999999999999999886 1 134544 4555556669999999
Q ss_pred cccC
Q 022341 193 RRFE 196 (298)
Q Consensus 193 ~~~~ 196 (298)
.+.+
T Consensus 147 ~~~~ 150 (389)
T 1n97_A 147 KPLS 150 (389)
T ss_dssp SCCC
T ss_pred Ccch
Confidence 9875
No 30
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1
Probab=99.85 E-value=3.7e-20 Score=165.59 Aligned_cols=225 Identities=9% Similarity=0.066 Sum_probs=146.6
Q ss_pred CCCCCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEe----e-CC-eeEEEeCCHHHHHHHHHhcCccccCCCC
Q 022341 30 RFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLR----M-GQ-RNLVVVSSPDHAKEVLHTQGVEFGSRTR 103 (298)
Q Consensus 30 ~~~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~----~-g~-~~~vvi~~p~~i~evl~~~~~~f~~r~~ 103 (298)
..++||||+++|+. +.. .++..+.+| ++||+|++++ + |+ .++|+++||+++++||.++. .|++++.
T Consensus 8 ~~~lppgp~~~p~~-----~~~-~p~~~~~~l-~~yGpv~~~~~~~~~~~~~~~~vvv~~~~~i~~vl~~~~-~~~~~~~ 79 (406)
T 1ued_A 8 VAPLLREPANFQLR-----TNC-DPHEDNFGL-RAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHE-HFTTRPQ 79 (406)
T ss_dssp CCCEEECCTTTTCE-----ETT-EECHHHHHH-HTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCS-SEECCCC
T ss_pred CCCCcccCcccCCC-----CCC-CcHHHHHHH-HHhCCeeeecccccCCCCCccEEEEcCHHHHHHHHhhCc-ccccccc
Confidence 35689999999987 232 378889999 9999999999 7 88 99999999999999994332 3666654
Q ss_pred cch----hh-h-hccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHH
Q 022341 104 NVV----FD-I-FTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRR 177 (298)
Q Consensus 104 ~~~----~~-~-~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (298)
... .. . ..+. + ++..+|+.|+++||++. +.|+.+.++.+.+.++++++++++.|... ++.+|+..
T Consensus 80 ~~~~~~~~~~~~~~~~--~-l~~~~g~~~~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-----g~~~d~~~ 150 (406)
T 1ued_A 80 FTQSKSGAHVEAQFVG--Q-ISTYDPPEHTRLRKMLT-PEFTVRRIRRMEPAIQSLIDDRLDLLEAE-----GPSADLQG 150 (406)
T ss_dssp C---------CGGGTT--C-GGGCCTTHHHHHHHHHG-GGSSHHHHHHHHHHHHHHHHHHHHHHHHH-----CTTEEHHH
T ss_pred cccccccccccccccc--c-cccCCCHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCeeHHH
Confidence 211 11 1 1122 2 56678999999999874 88999889999999999999999999741 22455543
Q ss_pred -HHH-HHHHHHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHH
Q 022341 178 -LQL-MMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKD 255 (298)
Q Consensus 178 -~~~-~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~ 255 (298)
+.. .++++|+ .+||.+.+ + ...+.. ....+.. . . .+ .+...+. .+....+..
T Consensus 151 ~~~~~~~~~vi~-~~~G~~~~---~--~~~~~~---~~~~~~~---~---~-~~-----~~~~~~~-----~~~~~~~~~ 204 (406)
T 1ued_A 151 LFADPVGAHALC-ELLGIPRD---D--QREFVR---RIRRNAD---L---S-RG-----LKARAAD-----SAAFNRYLD 204 (406)
T ss_dssp HTHHHHHHHHHH-HHHTCCHH---H--HHHHHH---HHHHCC----------CC-----HHHHHHH-----HHHHHHHHH
T ss_pred HHHHHhHHHHHH-HHcCCCHH---H--HHHHHH---HHHHHHh---c---c-CC-----HHHHHHH-----HHHHHHHHH
Confidence 444 3444576 57998642 1 111111 1111111 0 0 01 0111111 112233333
Q ss_pred HHHHhc---ccCChHHHHHhhcccCCCCHHHHHHHHHHHhhcccCC
Q 022341 256 YFVEER---NLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 256 ~~i~~~---~~~d~ld~ll~~~~~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
+.++++ ..+|+++.|++.. .+.+|++++...+.++++||+++
T Consensus 205 ~~i~~r~~~~~~d~l~~ll~~~-~~~ls~~ei~~~~~~l~~AG~dT 249 (406)
T 1ued_A 205 NLLARQRADPDDGLLGMIVRDH-GDNVTDEELKGLCTALILGGVET 249 (406)
T ss_dssp HHHHHHHHSCCSSHHHHHHHHH-GGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHhc-CCCCCHHHHHHHHHHHHHHhhHH
Confidence 444332 2579999999865 34699999999999999999863
No 31
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=99.84 E-value=4.2e-21 Score=174.80 Aligned_cols=244 Identities=13% Similarity=0.112 Sum_probs=142.9
Q ss_pred CCCCCCCCCCCC-CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCc-c
Q 022341 28 GKRFKLPPGPLP-VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN-V 105 (298)
Q Consensus 28 ~~~~~~ppGP~~-~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~-~ 105 (298)
++..+.||||++ +|++||++++..+ ++..+.+|+++||+||++++|+.+++|+++|+++++++.++.. ++.++.. .
T Consensus 14 ~~~~~~pPgp~~~~P~iG~~~~~~~~-~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~-~~~~~~~~~ 91 (475)
T 3b98_A 14 TRRRNEPPLDKGMIPWLGHALEFGKD-AAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVAS-LDQTSYAQV 91 (475)
T ss_dssp CCCTTCCCEECCSSTTTBTHHHHHHC-HHHHHHHHHHHHCSEEEEEETTEEEEEECCTTTHHHHHTCTTT-EESHHHHHH
T ss_pred ccCCCCCCCCCCCcchHHhHHHHhhC-HHHHHHHHHHHhCCeEEEEECCceEEEEeCHHHHHHHHcCccc-CCchHHHHH
Confidence 344568999998 9999999988544 7889999999999999999999999999999999999976542 4433321 1
Q ss_pred hhhhhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHHHHHH-HHH
Q 022341 106 VFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLM-MYN 184 (298)
Q Consensus 106 ~~~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~ 184 (298)
....+.+.+ ++..+|+.|+ +++ .+.|+.+.++.+.+.+.+++..+++.+....+......+++..+... ++.
T Consensus 92 ~~~~~~g~~---~~~~~~~~~R---~~~-~~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (475)
T 3b98_A 92 LMKRIFNMI---LPSHNPESEK---KRA-EMHFQGASLTQLSNSMQNNLRLLMTPSEMGLKTSEWKKDGLFNLCYSLLFK 164 (475)
T ss_dssp HHHHTTCCC---CTTCCHHHHH---HHH-HHHTSHHHHHHHHHHHHHHHHHHSSTTTTTCSSCSCEEEEHHHHHHHHHHH
T ss_pred HHHHHhCCC---CCCCChHHHH---HHH-HHHcChhhHHHHHHHHHHHHHHHHhhcccccCCCCceeehHHHHHHHHHHH
Confidence 222333433 3345677664 444 35788888888888888888888776543210001112343333222 233
Q ss_pred HHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCcccccccccc-ccch-hhHHHHHHHHHHHHHHHHHHHHHhc-
Q 022341 185 NMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILR-PFLR-GYLKICKEVKERRLQLFKDYFVEER- 261 (298)
Q Consensus 185 ~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~-~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~- 261 (298)
.++...||.. .. + ...+..+.+.+..+ .+.+|++. .++. ...+...+.. + .+...+.+++
T Consensus 165 ~~~~~~~g~~--~~-~--~~~~~~~~~~~~~~--------~~~~p~l~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~ 227 (475)
T 3b98_A 165 TGYLTVFGAE--NN-N--SAALTQIYEEFRRF--------DKLLPKLARTTVNKEEKQIASAAR-E---KLWKWLTPSGL 227 (475)
T ss_dssp HHHHHHHCCT--TS-C--HHHHHHHHHHHHHH--------HHHHHHHHTTCCCHHHHHHHHHHH-H---HHHHHHSCTTS
T ss_pred HhhhheeCCc--cc-c--chhcHHHHHHHHHH--------HhhhHHHHHHhcChhhhHHHHHHH-H---HHHHHHHHHHh
Confidence 3555566632 11 1 12222222222111 13344322 1111 1111111111 1 1111111111
Q ss_pred ----ccCChHHHHHhhcc-cCCCCHHHHHHHHHHHhhcccCC
Q 022341 262 ----NLKCAIDHILDAQT-KGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 262 ----~~~d~ld~ll~~~~-~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
...|+++.+++..+ .+.++++++. .+.++++||+++
T Consensus 228 ~~~~~~~d~l~~ll~~~~~~~~~~~~~i~-~~~~~l~ag~~T 268 (475)
T 3b98_A 228 DRKPREQSWLGSYVKQLQDEGIDAEMQRR-AMLLQLWVTQGN 268 (475)
T ss_dssp CCCCCTTSHHHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHSS
T ss_pred hccccccHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHcccc
Confidence 25799999997643 3468899999 889999999875
No 32
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=99.83 E-value=2.7e-19 Score=160.28 Aligned_cols=229 Identities=15% Similarity=0.166 Sum_probs=145.5
Q ss_pred CCCCCCCCCccccccccCCCCcchHHHHHHHHHh-CCeEEEee-CCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhhh
Q 022341 32 KLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKY-GDVLLLRM-GQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDI 109 (298)
Q Consensus 32 ~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~y-G~i~~~~~-g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~~ 109 (298)
..||||+++|.+.....+..+ ++..+.+| ++| |||+++++ |+.+++++++|+++++||.++. |++++....+..
T Consensus 5 ~~~~~~~~~P~~~~~~~~~~~-p~~~~~~l-~~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~ 80 (412)
T 2zbx_A 5 ATTPQTTDAPAFPSNRSCPYQ-LPDGYAQL-RDTPGPLHRVTLYDGRQAWVVTKHEAARKLLGDPR--LSSNRTDDNFPA 80 (412)
T ss_dssp ---CCCCSSCBSSCCCSSTTS-CCHHHHHH-HHSSSSEEEEECTTSCEEEEECSHHHHHHHHTCTT--EECCTTSTTSCC
T ss_pred CCCCCCCCCCCCCCCchhccC-hHHHHHHH-HhcCCCeEeeccCCCCcEEEEecHHHHHHHHcCcc--cccCcccccccc
Confidence 457899888866333334333 78889999 888 99999998 8999999999999999997653 555543111111
Q ss_pred -------hccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHH-HHHH
Q 022341 110 -------FTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRR-LQLM 181 (298)
Q Consensus 110 -------~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~ 181 (298)
+...+.+ ++..+|+.|+++||++. +.|+.+.++.+.+.++++++.+++.|... ++.+|+.. +...
T Consensus 81 ~~~~~~~~~~~~~~-l~~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-----g~~~d~~~~~~~~ 153 (412)
T 2zbx_A 81 TSPRFEAVRESPQA-FIGLDPPEHGTRRRMTI-SEFTVKRIKGMRPEVEEVVHGFLDEMLAA-----GPTADLVSQFALP 153 (412)
T ss_dssp CSGGGC----CCCC-GGGCCTTHHHHHHTTTG-GGGSHHHHHHHHHHHHHHHHHHHHHHHHH-----CSCEEHHHHTTTH
T ss_pred cccccccccccccc-cccCCcHHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCccHHHHHHHH
Confidence 1001222 56678999999999875 78999989999999999999999999741 12355543 4333
Q ss_pred H-HHHHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 022341 182 M-YNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEE 260 (298)
Q Consensus 182 ~-~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 260 (298)
+ .++|+. +||.+.+. .+ .+..... .+... .+ + +...+. .+....+....+++
T Consensus 154 ~~~~vi~~-~~G~~~~~--~~---~~~~~~~---~~~~~--------~~---~--~~~~~~-----~~~~~~~~~~~i~~ 206 (412)
T 2zbx_A 154 VPSMVICR-LLGVPYAD--HE---FFQDASK---RLVQS--------TD---A--QSALTA-----RNDLAGYLDGLITQ 206 (412)
T ss_dssp HHHHHHHH-HHTCCGGG--HH---HHHHHHH---HHHHC--------SS---H--HHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCHHH--HH---HHHHHHH---HHhcc--------Cc---H--HHHHHH-----HHHHHHHHHHHHHH
Confidence 4 444665 79986532 11 1111111 11110 01 1 111111 11223333334433
Q ss_pred c---ccCChHHHHHhhccc-CCCCHHHHHHHHHHHhhcccCC
Q 022341 261 R---NLKCAIDHILDAQTK-GEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 261 ~---~~~d~ld~ll~~~~~-~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
+ ..+|+++.|++...+ +.+|++++...+.++++||+++
T Consensus 207 r~~~~~~d~l~~ll~~~~~~~~ls~~ei~~~~~~~~~AG~dT 248 (412)
T 2zbx_A 207 FQTEPGAGLVGALVADQLANGEIDREELISTAMLLLIAGHET 248 (412)
T ss_dssp HHHSCCSSHHHHHHHTTTTTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2 247999999986543 3699999999999999999863
No 33
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=99.83 E-value=1.7e-19 Score=162.56 Aligned_cols=236 Identities=12% Similarity=0.124 Sum_probs=149.0
Q ss_pred CCCCCCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEe--------eCCeeEEEeCCHHHHHHHHHhcCccccC
Q 022341 29 KRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLR--------MGQRNLVVVSSPDHAKEVLHTQGVEFGS 100 (298)
Q Consensus 29 ~~~~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~--------~g~~~~vvi~~p~~i~evl~~~~~~f~~ 100 (298)
++...||+|.+.++++....-..+ ++..+.++ ++||||++++ +|+.++++|++|++|++||.+ ...|++
T Consensus 15 ~~~~~p~~~~~~~~~~~~~~~~~~-p~~~~~~l-r~~gPv~~~~~~~g~~~~lG~~~~~vv~~~~~v~~vl~~-~~~fs~ 91 (433)
T 3ivy_A 15 TTVPSPNLPPGFDFTDPAIYAERL-PVAEFAEL-RSAAPIWWNGQDPGKGGGFHDGGFWAITKLNDVKEISRH-SDVFSS 91 (433)
T ss_dssp -----CCCCTTCCTTCHHHHTTCC-CHHHHHHH-HHHCSEEEEECCTTCSTTCCSSEEEEECSHHHHHHHHHC-TTTEES
T ss_pred cccCCCCCCCCCCCCCHHHhhcCC-ccHHHHHH-HhcCCEEecccccccccccCCCCEEEEecHHHHHHHHcC-hhhccC
Confidence 344567788778777665433322 77888888 7899999999 677899999999999999954 467888
Q ss_pred CCCcchhh--------hhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCCh
Q 022341 101 RTRNVVFD--------IFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGI 172 (298)
Q Consensus 101 r~~~~~~~--------~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 172 (298)
++...... .....+. .++..+|+.|+++||++ .+.|+++.++.+.+.++++++.+++.|... +.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~-~l~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~------~~ 163 (433)
T 3ivy_A 92 YENGVIPRFKNDIAREDIEVQRF-VMLNMDAPHHTRLRKII-SRGFTPRAVGRLHDELQERAQKIAAEAAAA------GS 163 (433)
T ss_dssp TTTCSCCCCCTTCCHHHHHGGGG-SGGGCCTTHHHHHHHHH-GGGSCHHHHHTTHHHHHHHHHHHHHHHHHH------CE
T ss_pred CcccccccccccccccccccccC-CccccChHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHhhC------CC
Confidence 87543221 1111122 25678899999999987 589999999999999999999999999732 12
Q ss_pred hh-HHHH-HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHH
Q 022341 173 VL-RRRL-QLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRL 250 (298)
Q Consensus 173 ~~-~~~~-~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~ 250 (298)
+| ...+ ...++++|+++ ||... +....+. + ....+ .....|.... ....+.. +.+
T Consensus 164 ~d~~~~~~~~~~~~vi~~l-~G~~~-----~~~~~~~---~----~~~~~---~~~~~p~~~~--~~~~~~~-----~~~ 220 (433)
T 3ivy_A 164 GDFVEQVSCELPLQAIAGL-LGVPQ-----EDRGKLF---H----WSNEM---TGNEDPEYAH--IDPKASS-----AEL 220 (433)
T ss_dssp EEHHHHTTSHHHHHHHHHH-HTCCH-----HHHHHHH---H----HHTTC---SCCCCGGGTT--CCHHHHH-----HHH
T ss_pred eeHHHHHHHHHHHHHHHHH-cCCCH-----HHHHHHH---H----HHHHH---hccCCchhhh--HHHHHHH-----HHH
Confidence 34 3454 44556668885 99632 1111111 1 11111 0112232221 0111111 223
Q ss_pred HHHHHHHHHhcc---cCChHHHHHhhcccC-CCCHHHHHHHHHHHhhcccCC
Q 022341 251 QLFKDYFVEERN---LKCAIDHILDAQTKG-EINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 251 ~~~~~~~i~~~~---~~d~ld~ll~~~~~~-~~t~~~i~~~~~~l~~aG~~~ 298 (298)
..+....+++++ .+|+++.|++...++ .+|++++...+.++++||+++
T Consensus 221 ~~~~~~~i~~r~~~~~~dll~~ll~~~~~~~~ls~~ei~~~~~~ll~AG~dT 272 (433)
T 3ivy_A 221 IGYAMKMAEEKAKNPADDIVTQLIQADIDGEKLSDDEFGFFVVMLAVAGNET 272 (433)
T ss_dssp HHHHHHHHHHC-------CHHHHHSCC--CCCCCHHHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHhhhcCCCCCCHHHHHHHHHHHHHhhhHH
Confidence 344445555443 469999999875544 699999999999999999864
No 34
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=99.81 E-value=7.4e-19 Score=157.54 Aligned_cols=231 Identities=15% Similarity=0.098 Sum_probs=149.6
Q ss_pred CCCCCCCCCCCCCccc--cccccCCC----CcchHHHHHHHHHhC--CeEEEe-eCCeeEEEeCCHHHHHHHHHhcCccc
Q 022341 28 GKRFKLPPGPLPVPVF--GNWLQVGD----DLNHRNLSDLAKKYG--DVLLLR-MGQRNLVVVSSPDHAKEVLHTQGVEF 98 (298)
Q Consensus 28 ~~~~~~ppGP~~~Pii--Gnl~~l~~----~~~~~~~~~~~~~yG--~i~~~~-~g~~~~vvi~~p~~i~evl~~~~~~f 98 (298)
.++.++||||++.|.. +.+..+.. ..++..+.+|. +|| +||+++ +| +++++++|+++++||.+ ...|
T Consensus 7 ~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~p~~~~~~l~-~~G~~pv~~~~~~g--~~vvv~~~~~v~~vl~~-~~~f 82 (415)
T 2zwu_A 7 QSNANLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQ-ESNVPDLVWTRCNG--GHWIATRGQLIREAYED-YRHF 82 (415)
T ss_dssp ----CCCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHHGGG-STTSCSEEEECGGG--CEEEECSHHHHHHHHHC-TTTE
T ss_pred cCccccCCCCCCCCcccccccCcCChhhcccChHHHHHHHH-hcCCCCeEEecCCC--CeEEEcCHHHHHHHHcC-cccc
Confidence 4456899999999875 54322211 12567788885 799 999999 67 69999999999999964 4578
Q ss_pred cCCC-CcchhhhhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-
Q 022341 99 GSRT-RNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR- 176 (298)
Q Consensus 99 ~~r~-~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~- 176 (298)
++|+ ......... +.+.++..+|+.|+++||++. +.|+.+.++.+.+.++++++.+++.|... +.+|+.
T Consensus 83 ~~~~~~~~~~~~~~--~~~~l~~~~g~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~~------~~~d~~~ 153 (415)
T 2zwu_A 83 SSECPFIPREAGEA--YDFIPTSMDPPEQRQFRALAN-QVVGMPVVDKLENRIQELACSLIESLRPQ------GQCNFTE 153 (415)
T ss_dssp ETTSCSSSHHHHHH--CCCTTTTCCTTTTHHHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHHHHGGG------TEEEHHH
T ss_pred CCCcccCCCCcccc--ccccCccCCCcHHHHHHHHHH-hhhCHHHHHHHHHHHHHHHHHHHHHHHhc------CCccHHH
Confidence 8887 222222211 222034568999999999874 88898889999999999999999999752 135554
Q ss_pred HH-HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHH
Q 022341 177 RL-QLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKD 255 (298)
Q Consensus 177 ~~-~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~ 255 (298)
.+ ...++++|+++ ||.+.+. .+ .+.... ..+.... .|. ...+.. +....+..
T Consensus 154 ~~~~~~~~~vi~~~-~G~~~~~--~~---~~~~~~---~~~~~~~-------~P~------~~~~~~-----~~~~~~~~ 206 (415)
T 2zwu_A 154 DYAEPFPIRIFMLL-AGLPEED--IP---HLKYLT---DQMTRPD-------GSM------TFAEAK-----EALYDYLI 206 (415)
T ss_dssp HTTTHHHHHHHHHH-HTCCGGG--HH---HHHHHH---HHHHSCC-------SSS------CHHHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHH-cCCCHHH--HH---HHHHHH---HHHHhcc-------CHH------HHHHHH-----HHHHHHHH
Confidence 34 34556669988 9987642 11 122111 1121110 132 111111 11222333
Q ss_pred HHHHhc---ccCChHHHHHhhcccC-CCCHHHHHHHHHHHhhcccCC
Q 022341 256 YFVEER---NLKCAIDHILDAQTKG-EINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 256 ~~i~~~---~~~d~ld~ll~~~~~~-~~t~~~i~~~~~~l~~aG~~~ 298 (298)
..++++ ...|+++.|++...++ .+|++++...+.++++||+++
T Consensus 207 ~~i~~r~~~~~~dll~~ll~~~~~~~~l~~~~i~~~~~~l~~AG~dT 253 (415)
T 2zwu_A 207 PIIEQRRQKPGTDAISIVANGQVNGRPITSDEAKRMCGLLLVGGLDT 253 (415)
T ss_dssp HHHHHHHHSCCSSHHHHHHTCEETTEECCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhHhH
Confidence 333332 2579999999865444 599999999999999999874
No 35
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=99.81 E-value=1.8e-18 Score=155.12 Aligned_cols=228 Identities=11% Similarity=0.098 Sum_probs=144.7
Q ss_pred CCCCccccccccCCCCcchHHHHHHHHHhC-CeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcc--hhhhhccC
Q 022341 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYG-DVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV--VFDIFTGK 113 (298)
Q Consensus 37 P~~~PiiGnl~~l~~~~~~~~~~~~~~~yG-~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~--~~~~~~~~ 113 (298)
||+.|++||+.++..+ ++..+.++.++|| ||+++++++.++|++++|++++.++ + ...|+.++..+ ....+.|.
T Consensus 5 ~Pg~P~lG~~~~~~~~-p~~~~~~l~~~yg~pv~~~~~~g~~~v~v~~~~~~~~l~-~-~~~~~~~~~~~~~~~~~~~g~ 81 (417)
T 1izo_A 5 IPHDKSLDNSLTLLKE-GYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFY-D-TDRFQRQNALPKRVQKSLFGV 81 (417)
T ss_dssp -CBCCCTTHHHHHHHH-GGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHT-C-TTTEECTTCSCHHHHTTTTCT
T ss_pred CCCCCccchHHHHhhC-cHHHHHHHHHHhCCCeEEeecCCccEEEECCHHHHHHHh-c-ccccccccccccchhhhhccc
Confidence 4455999999988544 7788999999998 9999999999999999999998544 3 23465544322 22233332
Q ss_pred CCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHHHHHHHHHHHHhc
Q 022341 114 GQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQLMMYNNMYRIMFD 192 (298)
Q Consensus 114 ~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~fG 192 (298)
+.+++.+|+.|+++|+++ .+.|+++.++.+.+.++++++++++.|... +.+|+. .+...++.+|+++ ||
T Consensus 82 --~~l~~~dg~~h~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~------~~~dl~~~~~~~~~~vi~~~-~G 151 (417)
T 1izo_A 82 --NAIQGMDGSAHIHRKMLF-LSLMTPPHQKRLAELMTEEWKAAVTRWEKA------DEVVLFEEAKEILCRVACYW-AG 151 (417)
T ss_dssp --TCGGGCCHHHHHHHHHHH-HHTSSHHHHHHHHHHHHHHHHHHHHHHTTS------SEEEHHHHHHHHHHHHHHHH-HT
T ss_pred --cceeecCChHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHhcC------CCeeHHHHHHHHHHHHHHHH-cC
Confidence 235677899999999987 588999999999999999999999999642 234544 3444455568887 69
Q ss_pred cccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc-------ccCC
Q 022341 193 RRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER-------NLKC 265 (298)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------~~~d 265 (298)
.+.+.. ...+... .+..+...+. ...|. .....+. .+....+....++++ ...|
T Consensus 152 ~~~~~~--~~~~~~~----~~~~~~~~~~----~~~~~----~~~~~~~-----~~~~~~~~~~~i~~r~~~~~~~~~~d 212 (417)
T 1izo_A 152 VPLKET--EVKERAD----DFIDMVDAFG----AVGPR----HWKGRRA-----RPRAEEWIEVMIEDARAGLLKTTSGT 212 (417)
T ss_dssp CCCCTT--THHHHHH----HHHHHHHHTT----CCSHH----HHHHHHH-----HHHHHHHHHHHHHHHHTTSSCCCTTS
T ss_pred CCCCch--HHHHHHH----HHHHHHhhcc----cCCcc----chhHHHH-----HHHHHHHHHHHHHHHHhhccCCCcCC
Confidence 876542 2211111 1112222111 11121 1111111 122333333333322 2468
Q ss_pred hHHHHHhhcc-cC-CCCHHHHHHHHHHHhhcccC
Q 022341 266 AIDHILDAQT-KG-EINEDNVLYIVENINVAGMF 297 (298)
Q Consensus 266 ~ld~ll~~~~-~~-~~t~~~i~~~~~~l~~aG~~ 297 (298)
+++.|++..+ ++ .++++++..++..++ ||++
T Consensus 213 ~l~~ll~~~~~~g~~l~~~~~~~~~~~~~-ag~~ 245 (417)
T 1izo_A 213 ALHEMAFHTQEDGSQLDSRMAAIELINVL-RPIV 245 (417)
T ss_dssp HHHHHHHCBCTTSCBCCHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHhccccCCCCCHHHHHHHHHHHH-hhhh
Confidence 9999998643 33 489998888887765 7764
No 36
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=99.80 E-value=3.2e-18 Score=153.34 Aligned_cols=228 Identities=14% Similarity=0.085 Sum_probs=142.7
Q ss_pred CCCCCCCccccccccCCCCcchHHHHHHHHHh-CCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcc--hhhhh
Q 022341 34 PPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKY-GDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV--VFDIF 110 (298)
Q Consensus 34 ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~y-G~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~--~~~~~ 110 (298)
|||| |++||++++..+ ++..+.++.++| |||++++.++.+++++++|++++ ++.++ ..|+.++..+ ....+
T Consensus 4 pPg~---P~iG~~~~~~~~-p~~~~~~l~~~y~gpv~~~~~~g~~~~vv~~~~~~~-~l~~~-~~f~~~~~~~~~~~~~~ 77 (415)
T 3awm_A 4 TPHT---KGPDETLSLLAD-PYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAE-IFYDT-TRFEREGAMPVAIQKTL 77 (415)
T ss_dssp --------CCCCHHHHHHS-TTTHHHHHHHHHTSSEEEEEETTEEEEEEESHHHHH-HHTCT-TTEECTTCSCHHHHTTT
T ss_pred CCCC---CccchHHHHHhC-hHHHHHHHHHHhCCCeEEEecCCCcEEEEeCHHHHH-HHhcc-cccccccccchhhhhhc
Confidence 4665 899999887554 778899999999 79999999989999999999986 66443 4676654322 22223
Q ss_pred ccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHHHHHHHHHHH
Q 022341 111 TGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQLMMYNNMYRI 189 (298)
Q Consensus 111 ~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~i~~~ 189 (298)
.|. +.++..+|+.|+++||++ .+.|+++.++.+.+.+.+.++++++.|... +.+|+. .+...++.+|+++
T Consensus 78 ~g~--~~l~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~~~~~------~~vdl~~~~~~~~~~vi~~~ 148 (415)
T 3awm_A 78 LGQ--GGVQGLDGETHRHRKQMF-MGLMTPERVRALAQLFEAEWRRAVPGWTRK------GEIVFYDELHEPLTRAVCAW 148 (415)
T ss_dssp SCS--SSGGGCCHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEHHHHHHHHHHHHHHHH
T ss_pred cCC--cceeecCcHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHhhccC------CcEeHHHHHHHHHHHHHHHH
Confidence 332 225677899999999987 589999999999999999999999999642 234543 4444455668888
Q ss_pred HhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc-------c
Q 022341 190 MFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER-------N 262 (298)
Q Consensus 190 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------~ 262 (298)
||.+.+. +... .+.+.+..+...+. ...|. .....+. .+....+....++++ .
T Consensus 149 -~G~~~~~--~~~~----~~~~~~~~~~~~~~----~~~~~----~~~~~~~-----~~~~~~~~~~~i~~r~~~~~~~~ 208 (415)
T 3awm_A 149 -AGVPLPD--DEAG----NRAGELRALFDAAG----SASPR----HLWSRLA-----RRRVDAWAKRIIEGIRAGSIGSG 208 (415)
T ss_dssp -HTCCCCG--GGHH----HHHHHHHHHHHSTT----CSSHH----HHHHHHH-----HHHHHHHHHHHHHHHHHTSSCCC
T ss_pred -cCCCCCc--chHH----HHHHHHHHHHHHhc----ccCch----HHHHHHH-----HHHHHHHHHHHHHHHHHhhhcCC
Confidence 8987643 1211 11112222222111 01111 1111111 112233333333222 2
Q ss_pred cCChHHHHHhhcc-cC-CCCHHHHHHHHHHHhhcccC
Q 022341 263 LKCAIDHILDAQT-KG-EINEDNVLYIVENINVAGMF 297 (298)
Q Consensus 263 ~~d~ld~ll~~~~-~~-~~t~~~i~~~~~~l~~aG~~ 297 (298)
.+|+++.|++..+ ++ .++++++..++..++ ||++
T Consensus 209 ~~d~l~~ll~~~~~~g~~~~~~~~~~~~~~~~-ag~~ 244 (415)
T 3awm_A 209 SGTAAYAIAWHRDRHDDLLSPHVAAVELVNVL-RPTV 244 (415)
T ss_dssp TTSHHHHHHHCBCTTSCBCCHHHHHHHHHHHH-HHHH
T ss_pred CCCHHHHHHhhhhccCCCCCHHHHHHHHHHHH-Hhhh
Confidence 4589999998643 33 489999888887665 7765
No 37
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=99.80 E-value=1.6e-18 Score=153.73 Aligned_cols=209 Identities=12% Similarity=0.073 Sum_probs=138.1
Q ss_pred chHHHHHHHHHhCCeEEEeeCC----eeEEEeCCHHHHHHHHHhcCccccCCCCcchhhhhccCCCceEEecCChhHHHH
Q 022341 54 NHRNLSDLAKKYGDVLLLRMGQ----RNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKM 129 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g~----~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~~~~~~~~~~~~~~~g~~Wk~~ 129 (298)
++..+.+| ++||||++++.|+ .++|+++||+++++|| ++...|++|+........ ..+.+.+++.+|+.|+++
T Consensus 14 p~~~~~~l-r~yGpv~~~~~~~~~~g~~~vvv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~ 90 (384)
T 3oo3_A 14 PVPEFEEL-QKAGPLHEYDTEPGMDGRKQWLVTGHDEVRAIL-ADHERFSSMRPVDDEADR-ALLPGILQAYDPPDHTRL 90 (384)
T ss_dssp ECHHHHHH-HHTCSEECCCCC------CEEEECCHHHHHHHH-HCTTTEECSCCCC------CCCTTCGGGCCTTHHHHH
T ss_pred hhHHHHHH-HhcCCeeecccccccCCCCEEEEcCHHHHHHHH-hCchhccCCccccccccc-cccccccccCCChhHHHH
Confidence 78889998 5999999999987 8999999999999999 556789998864422221 112234667789999999
Q ss_pred hhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHH-HHHHHHHHHHHHHhccccCCCCchHHHHHHH
Q 022341 130 RRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRR-LQLMMYNNMYRIMFDRRFESQDDPLFNRLKA 208 (298)
Q Consensus 130 Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~ 208 (298)
||.+ .+.|+++.++.+.+.++++++.+++.|.+. ++++|+.. +...++..++..+||.+.+.. +. +..
T Consensus 91 R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-----~~~~d~~~~~~~~~~~~v~~~~~G~~~~~~-~~----~~~ 159 (384)
T 3oo3_A 91 RRTV-APAYSARRMERLRPRIEEIVEECLDDFESV-----GAPVDFVRHAAWPIPAYIACEFLGVPRDDQ-AE----LSR 159 (384)
T ss_dssp HHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHS-----CSSEEHHHHTTTHHHHHHHHHHHTCCGGGH-HH----HHH
T ss_pred HHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCccHHHHHHHHHHHHHHHHHcCCCHHHH-HH----HHH
Confidence 9987 589999999999999999999999999652 12345443 344455667777899865321 11 111
Q ss_pred HHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHhhcccCCCCHHHHH
Q 022341 209 LNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---NLKCAIDHILDAQTKGEINEDNVL 285 (298)
Q Consensus 209 ~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~d~ld~ll~~~~~~~~t~~~i~ 285 (298)
..+ .+.. .+. .+...+.. +....+....++++ ..+|+++.|++. +.+.+|++++.
T Consensus 160 ~~~---~~~~---------~~~----~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~d~l~~ll~~-~~~~l~~~~l~ 217 (384)
T 3oo3_A 160 MIR---ESRE---------SRL----PRQRTLSG-----LGIVNYTKRLTSGKRRDPGDGMIGVIVRE-HGAEISDEELA 217 (384)
T ss_dssp HHH---HHHH---------CSC----HHHHHHHH-----HHHHHHHHHHHHHHHHSCCSSHHHHHHHH-HGGGSCHHHHH
T ss_pred HHH---HHhc---------cCC----hHHHHHHH-----HHHHHHHHHHHHHHHhCCCCCHHHHHHHh-cCCCCCHHHHH
Confidence 111 1111 010 11111111 12223333333322 357999999986 33469999999
Q ss_pred HHHHHHhhcccCC
Q 022341 286 YIVENINVAGMFI 298 (298)
Q Consensus 286 ~~~~~l~~aG~~~ 298 (298)
..+.++++||+++
T Consensus 218 ~~~~~~~~AG~~T 230 (384)
T 3oo3_A 218 GLAEGNLIMAAEQ 230 (384)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHH
Confidence 9999999999863
No 38
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=99.80 E-value=4.7e-18 Score=151.71 Aligned_cols=213 Identities=10% Similarity=0.062 Sum_probs=138.1
Q ss_pred chHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcch------hhhhccCCCceEEecCChhHH
Q 022341 54 NHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVV------FDIFTGKGQDMVFTVYGEHWR 127 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~------~~~~~~~~~~~~~~~~g~~Wk 127 (298)
++..+.+| ++|||||++++|+.+++++++|++++++|.++ ..|++++.... .....+.+ ++..+|+.|+
T Consensus 15 p~~~~~~~-r~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~g~~h~ 89 (404)
T 3ejb_B 15 PYSFYDTL-RAVHPIYKGSFLKYPGWYVTGYEETAAILKDA-RFKVRTPLPESSTKYQDLSHVQNQM---MLFQNQPDHR 89 (404)
T ss_dssp HHHHHHHH-HHHCSEEEEEETTEEEEEECCHHHHHHHHHCT-TEECCCSSCTTCCTTHHHHHHHHTS---GGGCCTTHHH
T ss_pred chHHHHHH-HhhCCEeeccCCCCCEEEEecHHHHHHHHhCc-ccccCcccccccccccchhhhhhcc---hhhcCCchHH
Confidence 66778887 58999999999999999999999999999876 57888874221 11233333 5677899999
Q ss_pred HHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhh-HHHHHHHHH-HHHHHHHhccccCCCCchHHHH
Q 022341 128 KMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVL-RRRLQLMMY-NNMYRIMFDRRFESQDDPLFNR 205 (298)
Q Consensus 128 ~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~-~~i~~~~fG~~~~~~~~~~~~~ 205 (298)
++||++ .+.|+++.++.+.+.++++++.+++.|.+.. .+| ...+...++ ++++. +||.+.+. .. .
T Consensus 90 ~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~------~~d~~~~~~~~~~~~vi~~-~~G~~~~~--~~---~ 156 (404)
T 3ejb_B 90 RLRTLA-SGAFTPRTTESYQPYIIETVHHLLDQVQGKK------KMEVISDFAFPLASFVIAN-IIGVPEED--RE---Q 156 (404)
T ss_dssp HHHHHH-HGGGSHHHHHTTHHHHHHHHHHHHHTTTTTS------EEEHHHHTHHHHHHHHHHH-HHTCCGGG--HH---H
T ss_pred HHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHhhhcC------CcchHHHHHHHHHHHHHHH-HcCCCHHH--HH---H
Confidence 999997 5889999999999999999999999987531 234 345544344 44666 58976532 11 1
Q ss_pred HHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHhhcccCCCCHH
Q 022341 206 LKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---NLKCAIDHILDAQTKGEINED 282 (298)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~d~ld~ll~~~~~~~~t~~ 282 (298)
+...... +...+. .|......+ ...+. .+....+....++++ ..+|+++.|+...+.+.+|++
T Consensus 157 ~~~~~~~---~~~~~~------~p~~~~~~~----~~~~~-~~~~~~~~~~~i~~r~~~~~~d~l~~ll~~~~~~~ls~~ 222 (404)
T 3ejb_B 157 LKEWAAS---LIQTID------FTRSRKALT----EGNIM-AVQAMAYFKELIQKRKRHPQQDMISMLLKGREKDKLTEE 222 (404)
T ss_dssp HHHHHHH---HHGGGS------TTCCHHHHH----HHHHH-HHHHHHHHHHHHHHHHHSCCSSHHHHHHHC----CCCHH
T ss_pred HHHHHHH---HHHhcc------CCCCHHHHH----HHHHH-HHHHHHHHHHHHHHHHhCCcchHHHHHHhcccCCCCCHH
Confidence 2221111 111111 132211111 11111 122333444444332 357999999932233469999
Q ss_pred HHHHHHHHHhhcccCC
Q 022341 283 NVLYIVENINVAGMFI 298 (298)
Q Consensus 283 ~i~~~~~~l~~aG~~~ 298 (298)
++...+.++++||+++
T Consensus 223 el~~~~~~l~~AG~dT 238 (404)
T 3ejb_B 223 EAASTCILLAIAGHET 238 (404)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcchHH
Confidence 9999999999999863
No 39
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=99.80 E-value=3.3e-18 Score=152.89 Aligned_cols=226 Identities=12% Similarity=0.070 Sum_probs=149.5
Q ss_pred CCCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEee-CCee-EEEeCCHHHHHHHHHhcCccccCCCCcchh--
Q 022341 32 KLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRM-GQRN-LVVVSSPDHAKEVLHTQGVEFGSRTRNVVF-- 107 (298)
Q Consensus 32 ~~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~-g~~~-~vvi~~p~~i~evl~~~~~~f~~r~~~~~~-- 107 (298)
+.+|||+++|+.++. ..+ ++..+.++. +||||+++++ |+.+ ++++++|+++++||.+ ..|++++.....
T Consensus 8 ~~~~~~~~~p~~~~~---~~~-p~~~~~~l~-~~Gpv~~~~~~~g~~p~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~ 80 (406)
T 1s1f_A 8 QAVPPVRDWPAVDLP---GSD-FDPVLTELM-REGPVTRISLPNGEGWAWLVTRHDDVRLVTND--PRFGREAVMDRQVT 80 (406)
T ss_dssp CCSCCEEECCCCCCC---TTC-CCHHHHHHH-HHCSEEEEECSBSBSCEEEECSHHHHHHHHTC--TTEESTTTTTTTBC
T ss_pred hhccCCCCCCCCccc---ccC-chHHHHHHH-hcCCeeeeccCCCcccEEEEcCHHHHHHHHcC--CCccCCcCCCCCcc
Confidence 467898889998773 223 777888884 7999999996 5655 9999999999999976 368877643211
Q ss_pred --hh-hccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHH-HH
Q 022341 108 --DI-FTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQL-MM 182 (298)
Q Consensus 108 --~~-~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~-~~ 182 (298)
.. ..+.+.+ ++..+|+.|+++||++. +.|+++.++.+.+.++++++++++.|.+. ++++|+. .+.. .+
T Consensus 81 ~~~~~~~~~~~~-l~~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-----~~~~d~~~~~~~~~~ 153 (406)
T 1s1f_A 81 RLAPHFIPARGA-VGFLDPPDHTRLRRSVA-AAFTARGVERVRERSRGMLDELVDAMLRA-----GPPADLTEAVLSPFP 153 (406)
T ss_dssp BSSSSCSSCTTS-GGGCCTTHHHHHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHHHHHHH-----CSSEEHHHHTTTHHH
T ss_pred cccccccccccc-cccCCchHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCccHHHHHhhHhH
Confidence 11 2122333 45678999999999875 77899999999999999999999999741 1245543 4443 44
Q ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 022341 183 YNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERN 262 (298)
Q Consensus 183 ~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 262 (298)
+++|+. +||.+.+. .. .+...... +.... .| .+ ...+.. +.+..+....+++++
T Consensus 154 ~~vi~~-~~G~~~~~--~~---~~~~~~~~---~~~~~-------~~-~~----~~~~~~-----~~~~~~~~~~i~~r~ 207 (406)
T 1s1f_A 154 IAVICE-LMGVPATD--RH---SMHTWTQL---ILSSS-------HG-AE----VSERAK-----NEMNAYFSDLIGLRS 207 (406)
T ss_dssp HHHHHH-HHTCCGGG--HH---HHHHHHHH---HHHHH-------TT-CC----CCHHHH-----THHHHHHHHHHHTSC
T ss_pred HHHHHH-HhCCCHHH--HH---HHHHHHHH---HHhcc-------CC-HH----HHHHHH-----HHHHHHHHHHHHHHH
Confidence 555777 69987542 11 12222111 11110 01 01 111111 123344455555543
Q ss_pred ---cCChHHHHHhhcccCCCCHHHHHHHHHHHhhcccCC
Q 022341 263 ---LKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 263 ---~~d~ld~ll~~~~~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
.+|+++.|++..+++.+|++++...+.++++|| ++
T Consensus 208 ~~~~~d~l~~ll~~~~~~~ls~~el~~~~~~l~~AG-eT 245 (406)
T 1s1f_A 208 DSAGEDVTSLLGAAVGRDEITLSEAVGLAVLLQIGG-EA 245 (406)
T ss_dssp CSCCCSHHHHHHHHHHTTSSCHHHHHHHHHHHHHHT-TH
T ss_pred hCCCCCHHHHHHHhhcccCCCHHHHHHHHHHHHHhh-HH
Confidence 469999999865446799999999999999999 74
No 40
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=99.78 E-value=9.8e-18 Score=149.69 Aligned_cols=208 Identities=11% Similarity=0.078 Sum_probs=137.4
Q ss_pred chHHHHHHHHHhCCeEEEee-CCeeEEEeCCHHHHHHHHHhcCccccCCCC--c-ch---hhhhccCCCceEEecCChhH
Q 022341 54 NHRNLSDLAKKYGDVLLLRM-GQRNLVVVSSPDHAKEVLHTQGVEFGSRTR--N-VV---FDIFTGKGQDMVFTVYGEHW 126 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~-g~~~~vvi~~p~~i~evl~~~~~~f~~r~~--~-~~---~~~~~~~~~~~~~~~~g~~W 126 (298)
++..+.+| ++||||+++++ |+.+++++++|+++++||.++ .|++++. . .. ..... .+.+ ++..+|+.|
T Consensus 21 p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~-~~~~-l~~~~g~~h 95 (403)
T 3aba_A 21 PPDGIADI-RAAAPVTRATFTSGHEAWLVTGYEEVRALLRDS--SFSVQVPHALHTQDGVVTQKP-GRGS-LLWQDEPEH 95 (403)
T ss_dssp CCTTHHHH-HHHCSEEEEECTTSCEEEEECCHHHHHHHHHCT--TEESCCSCCTTSSSCCCCCCC-CTTC-CTTCCTTHH
T ss_pred hhHHHHHH-HhcCCeeeeccCCCceEEEEcCHHHHHHHHcCC--Ccccccccccccccccccccc-cccc-cccCCchhH
Confidence 67788999 89999999997 899999999999999999875 4777752 1 11 11111 1223 456789999
Q ss_pred HHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHH-HHHHHHHHHHhccccCCCCchHHH
Q 022341 127 RKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQL-MMYNNMYRIMFDRRFESQDDPLFN 204 (298)
Q Consensus 127 k~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~-~~~~~i~~~~fG~~~~~~~~~~~~ 204 (298)
+++||++. +.|+++.++.+.+.++++++++++.|.+ . ++.+|+. .+.. .++++|+. +||.+.+. . +
T Consensus 96 ~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~-~----~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~--~---~ 163 (403)
T 3aba_A 96 TSDRKLLA-KEFTVRRMQALRPNIQRIVDEHLDAIEA-R----GGPVDLVKTFANAVPSMVISD-LFGVPVER--R---A 163 (403)
T ss_dssp HHHHHHHH-HHSCHHHHHTTHHHHHHHHHHHHHHHHH-H----CSCEEHHHHTTTHHHHHHHHH-HHTCCGGG--H---H
T ss_pred HHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHHHh-c----CCCccHHHHHHHHHHHHHHHH-HcCCCHHH--H---H
Confidence 99999875 7899999999999999999999999974 1 1235543 4443 34555776 79986532 1 1
Q ss_pred HHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHhhcccC-CCC
Q 022341 205 RLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---NLKCAIDHILDAQTKG-EIN 280 (298)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~d~ld~ll~~~~~~-~~t 280 (298)
.+... ...+.... . -| +...+. .+....+....++++ ..+|+++.|+++.+++ .+|
T Consensus 164 ~~~~~---~~~~~~~~-----~-~p------~~~~~~-----~~~~~~~~~~~i~~r~~~~~~dll~~ll~~~~~~~~l~ 223 (403)
T 3aba_A 164 EFQDI---AEAMMRVD-----Q-DA------AATEAA-----GMRLGGLLYQLVQERRANPGDDLISALITTEDPDGVVD 223 (403)
T ss_dssp HHHHH---HHHHSBSS-----S-CH------HHHHHH-----HHHHHHHHHHHHHHHHHSCCSSHHHHHHTSCCTTCCCS
T ss_pred HHHHH---HHHHHhcc-----C-cH------HHHHHH-----HHHHHHHHHHHHHHHHhCCCCCHHHHHHhhccCCCCCC
Confidence 11111 11111110 0 01 111111 112233334444332 2469999999875444 699
Q ss_pred HHHHHHHHHHHhhcccCC
Q 022341 281 EDNVLYIVENINVAGMFI 298 (298)
Q Consensus 281 ~~~i~~~~~~l~~aG~~~ 298 (298)
++++...+.++++||+++
T Consensus 224 ~~ei~~~~~~l~~AG~dT 241 (403)
T 3aba_A 224 DMFLMNAAGTLLIAAHDT 241 (403)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999863
No 41
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=99.77 E-value=8e-18 Score=150.48 Aligned_cols=208 Identities=13% Similarity=0.141 Sum_probs=132.2
Q ss_pred chHHHHHHHHHhCCeEEEee-CCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhhh---hcc----CCCceEEecCChh
Q 022341 54 NHRNLSDLAKKYGDVLLLRM-GQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDI---FTG----KGQDMVFTVYGEH 125 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~-g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~~---~~~----~~~~~~~~~~g~~ 125 (298)
++..+.+| ++||||+++++ |+.++|+++||+++++||.++. |++++....+.. +.. .+.+ ++..+|+.
T Consensus 26 p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~g~~ 101 (408)
T 3abb_A 26 PPKAYEER-RGESPLTQVTLFDGRPAWLITGHAEGRALLVDPR--LSSDWGHPDFPVVVRRTEDRGGLAFP-LIGVDDPV 101 (408)
T ss_dssp CCHHHHHH-CCSSSEEEEECTTSCEEEEECCHHHHHHHHTCTT--EECCTTSTTCCCCC---------CCT-TTTCCTTH
T ss_pred chHHHHHH-HhcCCeeeeecCCCCcEEEEeCHHHHHHHHcCCC--cccccccccccccccCCccccccccc-cccCCchH
Confidence 78889999 89999999998 8999999999999999997653 555543111100 110 1112 45678999
Q ss_pred HHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHH-HHHHH-HHHHHHHHhccccCCCCchHH
Q 022341 126 WRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRR-LQLMM-YNNMYRIMFDRRFESQDDPLF 203 (298)
Q Consensus 126 Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~-~~~i~~~~fG~~~~~~~~~~~ 203 (298)
|+++||++. +.|+.+.++.+.+.++++++.+++.|... ++.+|+.. +...+ .++|+. +||.+.+. ..
T Consensus 102 h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-----g~~~d~~~~~~~~~~~~vi~~-~~G~~~~~--~~-- 170 (408)
T 3abb_A 102 HARQRRMLI-PSFGVKRMNAIRPRLQSLVDRLLDDMLAK-----GPGADLVSAFALPVPSVAICE-LLGVPYGD--HD-- 170 (408)
T ss_dssp HHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHHT-----CSCEEHHHHTTTHHHHHHHHH-HHTCCGGG--HH--
T ss_pred HHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCeehHHHHHHHHHHHHHHH-HhCCCHHH--HH--
Confidence 999999875 78999989999999999999999999742 12455543 43334 444665 79986532 11
Q ss_pred HHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHhhccc-CCC
Q 022341 204 NRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---NLKCAIDHILDAQTK-GEI 279 (298)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~d~ld~ll~~~~~-~~~ 279 (298)
.+....+ .+.. .. .| ...... . +....+....++++ ..+|+++.|+++..+ +.+
T Consensus 171 -~~~~~~~---~~~~---~~----~~--~~~~~~-~--------~~~~~~~~~~i~~r~~~~~~d~l~~ll~~~~~~~~l 228 (408)
T 3abb_A 171 -FFEECSR---NFVG---AA----TS--AEADAA-F--------GELYTYLHGLVGRKQAEPEDGLLDELIARQLEEGDL 228 (408)
T ss_dssp -HHHHHHH---HHC---------------CCSSH-H--------HHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHTSSSC
T ss_pred -HHHHHHH---HHhc---cc----ch--HHHHHH-H--------HHHHHHHHHHHHHHHhCCCCCHHHHHHhcccCCCCC
Confidence 1111111 1111 00 01 111111 0 11112222222222 247999999986533 369
Q ss_pred CHHHHHHHHHHHhhcccCC
Q 022341 280 NEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 280 t~~~i~~~~~~l~~aG~~~ 298 (298)
|++++...+.++++||+++
T Consensus 229 s~~ei~~~~~~l~~AG~dT 247 (408)
T 3abb_A 229 DHDEVVMIALVLLVAGHET 247 (408)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999863
No 42
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=99.77 E-value=5.7e-19 Score=161.61 Aligned_cols=163 Identities=10% Similarity=0.098 Sum_probs=114.8
Q ss_pred CCCCCCCCCCCCccccccccCC----CCcchHHHHHHHHHhCC-eEEEeeCCeeE-------EEeCCHHHHHHHHHhcC-
Q 022341 29 KRFKLPPGPLPVPVFGNWLQVG----DDLNHRNLSDLAKKYGD-VLLLRMGQRNL-------VVVSSPDHAKEVLHTQG- 95 (298)
Q Consensus 29 ~~~~~ppGP~~~PiiGnl~~l~----~~~~~~~~~~~~~~yG~-i~~~~~g~~~~-------vvi~~p~~i~evl~~~~- 95 (298)
.+.+.||||+|||+|||++++. ...++..+.++.++||+ ||++++|+.++ |++++++..+.++....
T Consensus 25 ~p~~~pPGp~g~P~iG~~~~~~~~~~~~~~~~f~~~~~~kyG~~Vf~~~l~~~~~vv~~p~~v~~~~~~~~~~l~~~~~v 104 (495)
T 3dsk_A 25 LPIRNIPGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLFDVDKV 104 (495)
T ss_dssp CCBCCCCCCCCSTTHHHHHHHHHHHTTSCHHHHHHHHHHHHTCSEEEEECSCCTTTCSCCEEEEECSTTTGGGGGCTTTE
T ss_pred CCCCCCCCCCCCCccchHHHHHHHHHhcCcHHHHHHHHHHhCCceEeecCCCCCCccCCCCEEEEeCCcceeeecccccc
Confidence 3456899999999999998763 33477899999999999 99999998888 67777776665554321
Q ss_pred ---ccccC-CCCcchhhhhcc-CCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccC
Q 022341 96 ---VEFGS-RTRNVVFDIFTG-KGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATN 170 (298)
Q Consensus 96 ---~~f~~-r~~~~~~~~~~~-~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 170 (298)
..+.. .+.. . .+.| .+...++..+|+.|+++|+++. +.|+... +.+.+.++++++.+++.|.+.... +
T Consensus 105 ~k~~~~~~~~~~~--~-~l~g~~~~~~~~~~~g~~h~~~R~~~~-~~f~~~~-~~~~~~i~~~~~~ll~~~~~~~~~--~ 177 (495)
T 3dsk_A 105 EKKDLLTGTYMPS--T-ELTGGYRILSYLDPSEPKHEKLKNLLF-FLLKSSR-NRIFPEFQATYSELFDSLEKELSL--K 177 (495)
T ss_dssp ECSSCTTSSSCCC--G-GGGTTCCCGGGCCTTSHHHHHHHHHHH-HHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred cccccccccCCCC--c-cccCCCcceeeeCCCchHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcc--C
Confidence 22222 2322 2 3344 2233455678999999999875 6677654 788899999999999999753211 1
Q ss_pred ChhhHH-HHHHHHHHHHHHHHhccccCCC
Q 022341 171 GIVLRR-RLQLMMYNNMYRIMFDRRFESQ 198 (298)
Q Consensus 171 ~~~~~~-~~~~~~~~~i~~~~fG~~~~~~ 198 (298)
+++|+. .+...+++++++++||.+.+..
T Consensus 178 ~~vdl~~~~~~~~~~~i~~~~~G~~~~~~ 206 (495)
T 3dsk_A 178 GKADFGGSSDGTAFNFLARAFYGTNPADT 206 (495)
T ss_dssp SSEESHHHHHHHHHHHHHHHHHSCCGGGS
T ss_pred CCccHHHHHHHHHHHHHHHHHcCCCcchh
Confidence 234543 4555566779999999877543
No 43
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=99.77 E-value=8.2e-18 Score=152.30 Aligned_cols=224 Identities=13% Similarity=0.066 Sum_probs=140.6
Q ss_pred chHHHHHHHHHhCCeE--EEe-eCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhhh---------hcc-C--CCceE
Q 022341 54 NHRNLSDLAKKYGDVL--LLR-MGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDI---------FTG-K--GQDMV 118 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~--~~~-~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~~---------~~~-~--~~~~~ 118 (298)
++..+.++ ++||||+ +++ +|+.++++|+++++|++||.+. ..|++|+....... ..| . ....+
T Consensus 47 p~~~~~~l-r~~gPV~~~~~~~~g~~~~~vvt~~~~v~~vl~~~-~~fs~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~l 124 (450)
T 3tkt_A 47 LLDRFDAL-RAEAPVAKVVAPDDEHEPFWLVSSFDGVMKASKDN-ATFLNNPKSTVFTLRVGEMMAKAITGGSPHLVESL 124 (450)
T ss_dssp HHHHHHHH-HHHCSEEEECCTTCSSCCEEEECSHHHHHHHHHCT-TTEESSSSCSSCCCHHHHHHHHHHHTSCSCSSCCG
T ss_pred chHHHHHH-HhcCCeecccccCCCCCCEEEEecHHHHHHHHhCc-ccccCCCccccccccccccccccccccccccccCc
Confidence 55667777 6799999 988 8889999999999999999655 78998875432111 111 0 11135
Q ss_pred EecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhH-HHHH-HHHHHHHHHHHhccccC
Q 022341 119 FTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLR-RRLQ-LMMYNNMYRIMFDRRFE 196 (298)
Q Consensus 119 ~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~-~~~~~~i~~~~fG~~~~ 196 (298)
+..+|+.|+++||++ .+.|+++.++.+.+.++++++.+++.|.+. ++++|. ..+. ..++++|+++ ||...+
T Consensus 125 ~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~-----~~~~dl~~~~~~~~~~~vi~~l-~G~~~~ 197 (450)
T 3tkt_A 125 VQMDAPKHPKLRRLT-QDWFMPKNLARLDGEIRKIANEAIDRMLGA-----GEEGDFMALVAAPYPLHVVMQI-LGVPPE 197 (450)
T ss_dssp GGCCTTHHHHHHHHH-HTTTSHHHHGGGHHHHHHHHHHHHHHHHHT-----CSEEEHHHHTTTHHHHHHHHHH-TTCCGG
T ss_pred ccCCCHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCEeeHHHHHHHHHHHHHHHH-cCCChh
Confidence 678899999999987 589999999999999999999999999752 123453 4453 4556668875 997532
Q ss_pred CCCchHHHHHHHHHHHHHhhhhccCCcccccccccccc--chhhHHHHHHHHHHHHHHHHHHHHHhcc---cCChHHHHH
Q 022341 197 SQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPF--LRGYLKICKEVKERRLQLFKDYFVEERN---LKCAIDHIL 271 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~d~ld~ll 271 (298)
. ...+... ...+..... .++.+++... .....+...+. .+.+..+....+++++ .+|+++.|+
T Consensus 198 ~-----~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~r~~~~~~dll~~ll 265 (450)
T 3tkt_A 198 D-----EPKMLFL---TQQMFGGQD---EDMNKSGLKDLPPEQISQIVAGA-VAEFERYFAGLAAERRRNPTDDVATVIA 265 (450)
T ss_dssp G-----HHHHHHH---HHTTSCCC-------------------HHHHHHHH-HHHHHHHHHHHHHHHHHSCCSSHHHHHH
T ss_pred H-----HHHHHHH---HHHHhcccc---chhhccccccccchhHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 1 1122211 112221111 1222222100 01111111111 1233344444444432 568999999
Q ss_pred hhcccC-CCCHHHHHHHHHHHhhcccCC
Q 022341 272 DAQTKG-EINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 272 ~~~~~~-~~t~~~i~~~~~~l~~aG~~~ 298 (298)
+...++ .+|++++...+.++++||+++
T Consensus 266 ~~~~~~~~ls~~ei~~~~~~l~~AG~dT 293 (450)
T 3tkt_A 266 NAVVDGEPMSDRDTAGYYIITASAGHDT 293 (450)
T ss_dssp TCEETTEECCHHHHHHHHHHHHHHHSHH
T ss_pred hccccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 876544 599999999999999999864
No 44
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=99.76 E-value=1.9e-17 Score=149.29 Aligned_cols=217 Identities=12% Similarity=0.090 Sum_probs=141.9
Q ss_pred chHHHHHHHHHhCCeEEEeeC-------CeeEEEeCCHHHHHHHHHhcCccccCCCCc--c-hhhhhccCCCceEEecCC
Q 022341 54 NHRNLSDLAKKYGDVLLLRMG-------QRNLVVVSSPDHAKEVLHTQGVEFGSRTRN--V-VFDIFTGKGQDMVFTVYG 123 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g-------~~~~vvi~~p~~i~evl~~~~~~f~~r~~~--~-~~~~~~~~~~~~~~~~~g 123 (298)
++..+.+|+ +|||||+++++ +.++|++++|+++++||.++ ..|++|+.. . ....+.+.+.+ ++..+|
T Consensus 46 p~~~~~~l~-~~Gpv~~~~~~~~~~~~~g~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~-l~~~dg 122 (435)
T 2wm5_A 46 RDGAFATLR-REAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHP-DIFSSYPNITINDQTPELAEYFGS-MIVLDD 122 (435)
T ss_dssp HHHHHHHHH-HHCSEEEECCCCC---CCCCCEEEECSHHHHHHHHHCT-TTEECSSCCSSSCCCHHHHHHHHG-GGGCCT
T ss_pred hhHHHHHHH-hcCCeEecccccccccCCCCCeEEEcCHHHHHHHHcCc-ccccCccccccCccccchhhhccc-cccCCc
Confidence 567788885 79999999986 66899999999999999875 478888742 1 22222111222 455689
Q ss_pred hhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HH-HHHHHHHHHHHHhccccCCCCch
Q 022341 124 EHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RL-QLMMYNNMYRIMFDRRFESQDDP 201 (298)
Q Consensus 124 ~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~-~~~~~~~i~~~~fG~~~~~~~~~ 201 (298)
+.|+++||++ .+.|+++.++.+.+.++++++++++.|.+..+ +..+|+. .+ ...++++|+++ ||.+.+. .+
T Consensus 123 ~~h~~~R~~l-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~---~~~vd~~~~~~~~~~~~vi~~~-~G~~~~~--~~ 195 (435)
T 2wm5_A 123 PRHQRLRSIV-SRAFTPKVVARIEAAVRDRAHRLVSSMIANNP---DRQADLVSELAGPLPLQIICDM-MGIPKAD--HQ 195 (435)
T ss_dssp THHHHHHHHH-HHTCCHHHHHHHHHHHHHHHHHHHHHHHHHCT---TSEEEHHHHTTTHHHHHHHHHH-HTCCGGG--HH
T ss_pred HHHHHHHHHh-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEehHHHHHHHHHHHHHHHH-cCCCHHH--HH
Confidence 9999999987 48899998999999999999999999975321 1245654 34 34556679998 9987642 11
Q ss_pred HHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHhhcccC-
Q 022341 202 LFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---NLKCAIDHILDAQTKG- 277 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~d~ld~ll~~~~~~- 277 (298)
.+....+. +.... .|.+.+..+...+.. +....+....++++ ..+|+++.|++...++
T Consensus 196 ---~~~~~~~~---~~~~~-------~p~~~~~~~~~~~~~-----~~~~~~~~~~i~~r~~~~~~dll~~ll~~~~~~~ 257 (435)
T 2wm5_A 196 ---RIFHWTNV---ILGFG-------DPDLATDFDEFMQVS-----ADIGAYATALAEDRRVNHHDDLTSSLVEAEVDGE 257 (435)
T ss_dssp ---HHHHHHHH---HHHTT-------CTTSCCCHHHHHHHH-----HHHHHHHHHHHHHHHHSCCSSHHHHHHHCCBTTB
T ss_pred ---HHHHHHHH---HhccC-------CcchhhhHHHHHHHH-----HHHHHHHHHHHHHHhcCCCCCHHHHHHhhhccCC
Confidence 12222111 11111 122111111111111 22333344444333 2579999999875444
Q ss_pred CCCHHHHHHHHHHHhhcccCC
Q 022341 278 EINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 278 ~~t~~~i~~~~~~l~~aG~~~ 298 (298)
.+|++++...+.++++||+++
T Consensus 258 ~ls~~ei~~~~~~l~~AG~dT 278 (435)
T 2wm5_A 258 RLSSREIASFFILLVVAGNET 278 (435)
T ss_dssp CCCHHHHHHHHHHHHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHhhHH
Confidence 599999999999999999863
No 45
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Probab=99.75 E-value=1.4e-17 Score=148.97 Aligned_cols=209 Identities=13% Similarity=0.129 Sum_probs=135.3
Q ss_pred chHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhhhhccCCCceEEecCChhHHHHhhhh
Q 022341 54 NHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIM 133 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~~ 133 (298)
++..+.++++ |||| |.|+.+.+++++|+++++||.++ ..|++|+... .......+. .++..+|+.|+++||++
T Consensus 30 p~~~~~~l~~-~gpv---~~~~~~~~vv~~~~~v~~vl~~~-~~f~~~~~~~-~~~~~~~~~-~~~~~~g~~~~~~R~~~ 102 (411)
T 2jjn_A 30 LLDWLGTMRE-KQPV---WQDRYGVWHVFRHADVQTVLRDT-ATFSSDPTRV-IEGASPTPG-MIHEIDPPEHRALRKVV 102 (411)
T ss_dssp HHHHHHHHHH-HCSE---EECTTSCEEECSHHHHHHHHHCT-TTEESCGGGG-STTCCCCTT-CGGGCCTTHHHHHHHHH
T ss_pred hHHHHHHHHH-hCCc---ccCCCCeEEECCHHHHHHHHcCc-ccccCccccc-CCccccccc-ccccCCchHHHHHHHHh
Confidence 6778888875 9999 67878899999999999999865 4788887432 112111122 25567899999999987
Q ss_pred cccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHH-HHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Q 022341 134 TVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQ-LMMYNNMYRIMFDRRFESQDDPLFNRLKALNG 211 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~-~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~ 211 (298)
. +.|+.+.++.+.+.++++++++++. . ++.+|+. .+. ..++++|+++ ||.+.+.. +...+...
T Consensus 103 ~-~~fs~~~l~~~~~~i~~~~~~ll~~--~------~~~~d~~~~~~~~~~~~vi~~~-fG~~~~~~-~~~~~~~~---- 167 (411)
T 2jjn_A 103 S-SAFTPRTISDLEPRIRDVTRSLLAD--A------GESFDLVDVLAFPLPVTIVAEL-LGLPPMDH-EQFGDWSG---- 167 (411)
T ss_dssp H-HHSCHHHHHTTHHHHHHHHHHHHHT--S------CSEEEHHHHTTTHHHHHHHHHH-HTCCSCCC-STTCCHHH----
T ss_pred h-hhcCHHHHHHHHHHHHHHHHHHHhc--C------CCceeHHHHHHHHHHHHHHHHH-cCCCHHHH-HHHHHHHH----
Confidence 4 8889999999999999999999987 1 1235554 444 3556668888 99876532 22222111
Q ss_pred HHHhhhhccCCcccccc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHhhcccC-CCCHHHHHH
Q 022341 212 ERSRLAQSFEYNYGDFI-PILRPFLRGYLKICKEVKERRLQLFKDYFVEER---NLKCAIDHILDAQTKG-EINEDNVLY 286 (298)
Q Consensus 212 ~~~~~~~~~~~~~~d~~-p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~d~ld~ll~~~~~~-~~t~~~i~~ 286 (298)
. +.... .+ .++ |. ..+. ..+. .+....+....++++ ..+|+++.|++...++ .+|++++..
T Consensus 168 ~---~~~~~-~~--~~~~p~---~~~~----~~~~-~~~~~~~~~~~i~~r~~~~~~d~l~~ll~~~~~~~~l~~~el~~ 233 (411)
T 2jjn_A 168 A---LVDIQ-MD--DPTDPA---LAER----IADV-LNPLTAYLKARCAERRADPGDDLISRLVLAEVDGRALDDEEAAN 233 (411)
T ss_dssp H---HHHSC-CS--CTTCHH---HHHH----HHHH-HHHHHHHHHHHHHHHHHSCCSSHHHHHHHCCBTTBCCCHHHHHH
T ss_pred H---HHhcc-Cc--cccchH---HHHH----HHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHhcccCCCCCCHHHHHH
Confidence 1 11111 00 111 11 0111 1111 122333444444433 2479999999875444 699999999
Q ss_pred HHHHHhhcccCC
Q 022341 287 IVENINVAGMFI 298 (298)
Q Consensus 287 ~~~~l~~aG~~~ 298 (298)
.+.++++||+++
T Consensus 234 ~~~~~~~AG~eT 245 (411)
T 2jjn_A 234 FSTALLLAGHIT 245 (411)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhhHH
Confidence 999999999863
No 46
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=99.75 E-value=6.9e-17 Score=145.19 Aligned_cols=213 Identities=13% Similarity=0.120 Sum_probs=138.9
Q ss_pred chHHHHHHHHHhCCeEEEeeC--CeeEEEeCCHHHHHHHHHhcCccccCCCCc--------c-h-------hhhhccCCC
Q 022341 54 NHRNLSDLAKKYGDVLLLRMG--QRNLVVVSSPDHAKEVLHTQGVEFGSRTRN--------V-V-------FDIFTGKGQ 115 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g--~~~~vvi~~p~~i~evl~~~~~~f~~r~~~--------~-~-------~~~~~~~~~ 115 (298)
++..+.++. +||||+++++| +.+++++++|+++++||.++ .|++|+.. . . ...+.+.+
T Consensus 22 p~~~~~~l~-~~Gpv~~~~~g~~~~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 97 (425)
T 2z3t_A 22 PYPVYRRYR-EAAPVHRTASGPGKPDTYYVFTYDDVVRVLSNR--RLGRNARVASGDTDTAPVPIPTEHRALRTVVENW- 97 (425)
T ss_dssp CHHHHHHHH-HHCSEEEECCCSSCCCEEEECSHHHHHHHHHCT--TEESSCCCC---------------CHHHHHHTTC-
T ss_pred hHHHHHHHH-hcCCeEeccccCCCCCeEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccccccccccc-
Confidence 677888886 59999999998 78899999999999999865 78888641 1 1 11222222
Q ss_pred ceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHH-HHHHHHHHHHHhcc
Q 022341 116 DMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQ-LMMYNNMYRIMFDR 193 (298)
Q Consensus 116 ~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~-~~~~~~i~~~~fG~ 193 (298)
++..+|+.|+++||++ .+.|+++.++.+.+.++++++++++.|.+. +.+|+. .+. ..++++|+++ ||.
T Consensus 98 --l~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~------g~~dl~~~~~~~~~~~vi~~~-~G~ 167 (425)
T 2z3t_A 98 --LVFLDPPHHTELRSLL-TTEFSPSIVTGLRPRIAELASALLDRLRAQ------RRPDLVEGFAAPLPILVISAL-LGI 167 (425)
T ss_dssp --GGGCCHHHHHHHHHHH-HGGGSHHHHHHHHHHHHHHHHHHHHHHTTS------SSCBHHHHTTTHHHHHHHHHH-HTC
T ss_pred --cccCCchHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHHHH-hCC
Confidence 4556899999999987 588999999999999999999999999753 134543 343 3455668887 998
Q ss_pred ccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcc---cCChHHHH
Q 022341 194 RFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERN---LKCAIDHI 270 (298)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~d~ld~l 270 (298)
+.+. .+ .+....+. +... .+++|. .+ ..+ +...+. .+....+....+++++ .+|+++.|
T Consensus 168 ~~~~--~~---~~~~~~~~---~~~~-----~~~~~~-~~--~~~-~~~~~~-~~~~~~~~~~~i~~r~~~~~~dll~~l 229 (425)
T 2z3t_A 168 PEED--HT---WLRANAVA---LQEA-----STTRAR-DG--RGY-ARAEAA-SQEFTRYFRREVDRRGGDDRDDLLTLL 229 (425)
T ss_dssp CGGG--HH---HHHHHHHH---HHTT-----CTTCCC------HH-HHHHHH-HHHHHHHHHHHHCC-------CHHHHH
T ss_pred CHHH--HH---HHHHHHHH---HHhh-----ccccCC-CH--HHH-HHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 6542 11 12222111 2111 122231 11 111 111111 1233445555555443 46999999
Q ss_pred HhhcccC-CCCHHHHHHHHHHHhhcccCC
Q 022341 271 LDAQTKG-EINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 271 l~~~~~~-~~t~~~i~~~~~~l~~aG~~~ 298 (298)
++...++ .+|++++...+.++++||+++
T Consensus 230 l~~~~~~~~ls~~el~~~~~~l~~AG~dT 258 (425)
T 2z3t_A 230 VRARDTGSPLSVDGIVGTCVHLLTAGHET 258 (425)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHhhccCCCCCHHHHHHHHHHHHHhhhHH
Confidence 9865443 699999999999999999975
No 47
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=99.75 E-value=3.2e-17 Score=146.98 Aligned_cols=210 Identities=13% Similarity=0.118 Sum_probs=138.6
Q ss_pred chHHHHHHHHHhCCeEEEeeC-CeeEEEeCCHHHHHHHHHhcCccccCCCCcc---hhhhhc---cCCCceEEecCChhH
Q 022341 54 NHRNLSDLAKKYGDVLLLRMG-QRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV---VFDIFT---GKGQDMVFTVYGEHW 126 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g-~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~---~~~~~~---~~~~~~~~~~~g~~W 126 (298)
++..+.+|+++ ||||++++| +.+++++++|++|++||.++ .|++++... ...... +.....++..+|+.|
T Consensus 31 p~~~~~~l~~~-Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h 107 (417)
T 3tyw_A 31 APAEYAALRTD-DPVARVTLPTRREAWVVTRYDDVRELLSDP--RVSADIRRPGFPALGEGEQEAGARFRPFIRTDAPEH 107 (417)
T ss_dssp CCTHHHHHHHT-CTEEEEECTTSCEEEEECCHHHHHHHHHCT--TEECCSSSTTCCCSSTTTSTTSSSCCCGGGCCHHHH
T ss_pred chHHHHHHHhh-CCeeeeecCCCCCeEEEcCHHHHHHHHcCC--CcccCCccccccccccccccccccccchhhcCCcHH
Confidence 78889999988 999999997 48999999999999999876 688765321 111111 011123566789999
Q ss_pred HHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHHHH-HHHHHHHHhccccCCCCchHHH
Q 022341 127 RKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQLMM-YNNMYRIMFDRRFESQDDPLFN 204 (298)
Q Consensus 127 k~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~-~~~i~~~~fG~~~~~~~~~~~~ 204 (298)
+++||++ .+.|+++.++.+.+.++++++.+++.|.+. ++++|+. .+...+ .++|+.+ ||.+.+.. +..
T Consensus 108 ~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-----g~~~d~~~~~~~~~~~~vi~~~-~G~~~~~~-~~~-- 177 (417)
T 3tyw_A 108 TRYRRML-LPAFTVRRVRAMRPAVQARVDEILDGMLAA-----GGPVDLVSAYANAVSTSVICEL-LGIPRHDL-EFF-- 177 (417)
T ss_dssp HHHHHHH-GGGGCHHHHHHTHHHHHHHHHHHHHHHHHH-----CSSEEHHHHTHHHHHHHHHHHH-HTCCTTTT-THH--
T ss_pred HHHHHHH-HhhhCHHHHHHHHHHHHHHHHHHHHHHHhh-----CCCcchHHHHHHHHHHHHHHHH-hCCCHHHH-HHH--
Confidence 9999987 589999999999999999999999999752 2234543 343344 4457776 99876532 221
Q ss_pred HHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHhhccc-CCCC
Q 022341 205 RLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---NLKCAIDHILDAQTK-GEIN 280 (298)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~d~ld~ll~~~~~-~~~t 280 (298)
..... .+... .+. .....+.. +.+..+....++++ ..+|+++.|++...+ +.+|
T Consensus 178 --~~~~~---~~~~~--------~~~----~~~~~~~~-----~~l~~~~~~~i~~r~~~~~~d~l~~ll~~~~~~~~ls 235 (417)
T 3tyw_A 178 --RDVTR---ISGSR--------NST----AEQVSEAL-----GGLFGLLGGLVAERREEPRDDLISKLVTDHLVPGNVT 235 (417)
T ss_dssp --HHHHH---HHHSS--------SSC----TTHHHHHH-----HHHHHHHHHHHHHHHSSCCSSHHHHHHHHTTTTTSSC
T ss_pred --HHHHH---HHhcc--------cCC----HHHHHHHH-----HHHHHHHHHHHHHHhhCCCCCHHHHHHHhcccCCCCC
Confidence 11111 11111 111 11111111 12233334444333 257999999987544 4699
Q ss_pred HHHHHHHHHHHhhcccCC
Q 022341 281 EDNVLYIVENINVAGMFI 298 (298)
Q Consensus 281 ~~~i~~~~~~l~~aG~~~ 298 (298)
++++...+.++++||+++
T Consensus 236 ~~el~~~~~~l~~AG~eT 253 (417)
T 3tyw_A 236 TEQLLSTLGITINAGRET 253 (417)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHH
Confidence 999999999999999863
No 48
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=99.75 E-value=3.8e-18 Score=152.09 Aligned_cols=208 Identities=11% Similarity=0.040 Sum_probs=138.3
Q ss_pred chHHHHHHHHHh--CCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhhhhccCCCceEEecCChhHHHHhh
Q 022341 54 NHRNLSDLAKKY--GDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRR 131 (298)
Q Consensus 54 ~~~~~~~~~~~y--G~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk 131 (298)
++..+.+|+++| |||++++.|+ +++++++|+++++|| ++...|++|+....... ...+..+++..+|+.|+++||
T Consensus 21 p~~~~~~l~~~Y~~Gpv~~~~~~~-~~~vv~~~~~v~~vl-~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~R~ 97 (398)
T 4fb2_A 21 PHAFFEALRDEAETTPIGWSEAYG-GHWVVAGYKEIQAVI-QNTKAFSNKGVTFPRYE-TGEFELMMAGQDDPVHKKYRQ 97 (398)
T ss_dssp SHHHHHHHHHHHTTCSEEEECGGG-CEEEECSHHHHHHHH-TCCSSEEGGGCSSSCC-----CCCTTTTCCTTHHHHHHH
T ss_pred hhHHHHHHHhcCCCCCeEEecCCC-CEEEEccHHHHHHHH-hChhhccCCcccccCCC-CcccccCcccCCchHHHHHHH
Confidence 788999999999 9999999986 599999999999999 56668888875433111 111222356678999999999
Q ss_pred hhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhH-HHHH-HHHHHHHHHHHhccccCCCCchHHHHHHHH
Q 022341 132 IMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLR-RRLQ-LMMYNNMYRIMFDRRFESQDDPLFNRLKAL 209 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~-~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~ 209 (298)
++ .+.|+++.++.+.+.++++++.+++.|.+.. .+|. ..+. ..++++|++ +||.+.+. ...+...
T Consensus 98 ~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~------~~d~~~~~~~~~~~~vi~~-~~G~~~~~-----~~~~~~~ 164 (398)
T 4fb2_A 98 LV-AKPFSPEATDLFTEQLRQSTNDLIDARIELG------EGDAATWLANEIPARLTAI-LLGLPPED-----GDTYRRW 164 (398)
T ss_dssp HH-HTTTCHHHHHTTHHHHHHHHHHHHHTTTTTT------EEEHCCCCCTTHHHHHHHH-HTTSCGGG-----HHHHHHH
T ss_pred HH-HHhhCHHHHHHHHHHHHHHHHHHHHHHhhcC------CccHHHHHHHHHHHHHHHH-HcCCCHHH-----HHHHHHH
Confidence 87 5889999999999999999999999986532 1232 2332 344555777 78976432 1111111
Q ss_pred HHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHhhcccC-CCCHHHHH
Q 022341 210 NGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---NLKCAIDHILDAQTKG-EINEDNVL 285 (298)
Q Consensus 210 ~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~d~ld~ll~~~~~~-~~t~~~i~ 285 (298)
...+.... .| ....+.. +....+....++++ ..+|+++.|++...++ .+|++++.
T Consensus 165 ---~~~~~~~~-------~~------~~~~~~~-----~~~~~~~~~~i~~r~~~~~~d~l~~ll~~~~~~~~l~~~~i~ 223 (398)
T 4fb2_A 165 ---VWAITHVE-------NP------EEGAEIF-----AELVAHARTLIAERRTNPGNDIMSRVIMSKIDGESLSEDDLI 223 (398)
T ss_dssp ---HHHHHHCC-------CH------HHHHHHH-----HHHHHHHHHHHHHHHHSCCSSHHHHHHHCCBTTBCCCHHHHH
T ss_pred ---HHHHhcCC-------CH------HHHHHHH-----HHHHHHHHHHHHHHHhCCCCCHHHHHHHcccCCCCCCHHHHH
Confidence 11121110 01 0111111 12223333333332 3579999999876555 59999999
Q ss_pred HHHHHHhhcccCC
Q 022341 286 YIVENINVAGMFI 298 (298)
Q Consensus 286 ~~~~~l~~aG~~~ 298 (298)
..+.++++||+++
T Consensus 224 ~~~~~l~~AG~~T 236 (398)
T 4fb2_A 224 GFFTILLLGGIDN 236 (398)
T ss_dssp HHHHHCCCCCCHH
T ss_pred HHHHHHHHHhhHH
Confidence 9999999999864
No 49
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.75 E-value=3.6e-17 Score=146.22 Aligned_cols=211 Identities=17% Similarity=0.200 Sum_probs=136.0
Q ss_pred chHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCC--cchhhh------hcc--CCCceEEecCC
Q 022341 54 NHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTR--NVVFDI------FTG--KGQDMVFTVYG 123 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~--~~~~~~------~~~--~~~~~~~~~~g 123 (298)
++..+.+| ++||||+++++|+.++|+++||+++++||.++. ++.++. ...... +.+ .+.+ ++..+|
T Consensus 17 p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~g 92 (408)
T 1odo_A 17 HHTEHRTL-REGGPATWVDVLGVQAWSVSDPVLLKQLLTSSD--VSKDARAHWPAFGEVVGTWPLALWVAVEN-MFTAYG 92 (408)
T ss_dssp HHHHHHHH-HTTCSEEEEEETTEEEEEECCHHHHHHHTTCTT--EESCHHHHCTTHHHHTTTCTTTHHHHCCS-GGGCCH
T ss_pred hHHHHHHH-HHhCCeEEeccCCCCEEEECCHHHHHHHHcCCC--ccccccccccccccccccccccccccccc-ccccCC
Confidence 78889999 999999999999999999999999999997653 444442 110001 100 1122 567789
Q ss_pred hhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHH-HHH-HHHHHHHHHHhccccCCCCch
Q 022341 124 EHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRR-LQL-MMYNNMYRIMFDRRFESQDDP 201 (298)
Q Consensus 124 ~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~-~~~~~i~~~~fG~~~~~~~~~ 201 (298)
+.|+++||++ .+.|+++.++.+.+.++++++++++.|.+..+ ++++|+.. +.. .++++|+. +||.+.+.
T Consensus 93 ~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~---~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~---- 163 (408)
T 1odo_A 93 PNHRKLRRLV-APAFSARRVDAMRPAVEAMVTGLVDRLAELPA---GEPVDLRQELAYPLPIAVIGH-LMGVPQDR---- 163 (408)
T ss_dssp HHHHHHHHTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHHSCT---TSCEEHHHHTTTHHHHHHHHH-HHTCCHHH----
T ss_pred hHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCCcchHHHHhhhhHHHHHHH-HhCCCHHH----
Confidence 9999999987 48899999999999999999999999975321 23456543 433 44555774 79986431
Q ss_pred HHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHhhccc--
Q 022341 202 LFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---NLKCAIDHILDAQTK-- 276 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~d~ld~ll~~~~~-- 276 (298)
...+.... ..+... . .+ .+...+. .+.+..+....++++ ..+|+++.|+++..+
T Consensus 164 -~~~~~~~~---~~~~~~---~----~~-----~~~~~~~-----~~~~~~~~~~~i~~r~~~~~~d~l~~ll~~~~~~~ 222 (408)
T 1odo_A 164 -RDGFRALV---DGVFDT---T----LD-----QAEAQAN-----TARLYEVLDQLIAAKRATPGDDMTSLLIAARDDEG 222 (408)
T ss_dssp -HHHHHHHH---HHHHCT---T----CC-----HHHHHHH-----HHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHCC--
T ss_pred -HHHHHHHH---HHHhcc---c----CC-----HHHHHHH-----HHHHHHHHHHHHHHHhhCCCCCHHHHHHHhccccc
Confidence 11111111 111110 0 01 0111111 112233333444332 247999999986533
Q ss_pred --CCCCHHHHHHHHHHHhhcccCC
Q 022341 277 --GEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 277 --~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
+.+|++++...+.++++||+++
T Consensus 223 ~~~~l~~~ei~~~~~~~~~AG~dT 246 (408)
T 1odo_A 223 DGDRLSPEELRDTLLLMISAGYET 246 (408)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTT
T ss_pred ccCCCCHHHHHHHHHHHHHHhHHH
Confidence 3599999999999999999875
No 50
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=99.75 E-value=2.9e-17 Score=147.40 Aligned_cols=215 Identities=11% Similarity=0.078 Sum_probs=138.6
Q ss_pred chHHHHHHHHHhC-CeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhhhhccCCCceEEecCChhHHHHhhh
Q 022341 54 NHRNLSDLAKKYG-DVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRI 132 (298)
Q Consensus 54 ~~~~~~~~~~~yG-~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~ 132 (298)
++..+.++.+++| ||+++..|+ +.++|++|+++++|| ++...|++++.... ....+.+...++..+|+.|+++||+
T Consensus 40 p~~~~~~lr~~~G~pv~~~~~~~-~~~vv~~~~~v~~vl-~~~~~f~~~~~~~~-~~~~~~~~~~~~~~dg~~h~~~R~~ 116 (421)
T 3lxh_A 40 FHEAWKRVQQPDTPPLVWTPFTG-GHWIATRGTLIDEIY-RSPERFSSRVIWVP-REAGEAYDMVPTKLDPPEHTPYRKA 116 (421)
T ss_dssp HHHHHHHHCCTTCCSEEEESSTT-SEEEECSHHHHHHHH-TCTTTEETTCCSSS-HHHHHHCCCTTTTCCTTTHHHHHHH
T ss_pred hhHHHHHHHhcCCCCeEeccCCC-CeEEEcCHHHHHHHH-cChhhccCCcccCC-cccccccccCCccCCcHHHHHHHHH
Confidence 6777888876655 899999876 589999999999999 55568888874321 1111111122566789999999998
Q ss_pred hcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhh-HHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Q 022341 133 MTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVL-RRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNG 211 (298)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~ 211 (298)
+ .+.|+++.++.+.+.++++++.+++.|.... .+| ...+...++..+...+||...+. ...+...
T Consensus 117 ~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~------~~d~~~~~~~~~~~~v~~~~~G~~~~~-----~~~~~~~-- 182 (421)
T 3lxh_A 117 I-DKGLNLAEIRKLEDQIRTIAVEIIEGFADRG------HCEFGSEFSTVFPVRVFLALAGLPVED-----ATKLGLL-- 182 (421)
T ss_dssp H-HHHHSHHHHHTTHHHHHHHHHHHHHTTTTTS------EEEHHHHTTTTHHHHHHHHHHTCCGGG-----HHHHHHH--
T ss_pred H-hhhcCHHHHHHHHHHHHHHHHHHHHHHhhcC------CeehHHHHHHHHHHHHHHHHcCCCHHH-----HHHHHHH--
Confidence 7 5899999999999999999999999986431 233 34444444445444568975421 1112211
Q ss_pred HHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcc---cCChHHHHHhhcccC-CCCHHHHHHH
Q 022341 212 ERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERN---LKCAIDHILDAQTKG-EINEDNVLYI 287 (298)
Q Consensus 212 ~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~d~ld~ll~~~~~~-~~t~~~i~~~ 287 (298)
...+... ..++|... .+. ..+. .+.+..+....+++++ .+|+++.|+++..++ .+|++++...
T Consensus 183 -~~~~~~~-----~~~~p~~~--~~~----~~~~-~~~~~~~~~~~i~~r~~~~~~dll~~ll~~~~~~~~l~~~ei~~~ 249 (421)
T 3lxh_A 183 -ANEMTRP-----SGNTPEEQ--GRS----LEAA-NKGFFEYVAPIIAARRGGSGTDLITRILNVEIDGKPMPDDRALGL 249 (421)
T ss_dssp -HHHHHSC-----CCSSHHHH--HHH----HHHH-HHHHHHHHHHHHHHHTTCCCCSHHHHHHTSCBTTBCCCHHHHHHH
T ss_pred -HHHHhcc-----ccCCCchh--HHH----HHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHhhhccCCCCCHHHHHHH
Confidence 1112111 12334311 111 1111 1233444555554432 579999999875544 6999999999
Q ss_pred HHHHhhcccCC
Q 022341 288 VENINVAGMFI 298 (298)
Q Consensus 288 ~~~l~~aG~~~ 298 (298)
+.++++||+++
T Consensus 250 ~~~l~~AG~eT 260 (421)
T 3lxh_A 250 VSLLLLGGLDT 260 (421)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhHHH
Confidence 99999999863
No 51
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=99.75 E-value=1e-16 Score=143.40 Aligned_cols=207 Identities=12% Similarity=0.160 Sum_probs=138.3
Q ss_pred chHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchh---h-hhcc-CCCceEEecCChhHHH
Q 022341 54 NHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVF---D-IFTG-KGQDMVFTVYGEHWRK 128 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~---~-~~~~-~~~~~~~~~~g~~Wk~ 128 (298)
++..+.+| ++||||+++++|+.+++++++|+++++||.++. |++|+..... . .+.+ .+.+ ++..+|+.|++
T Consensus 22 p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~-l~~~~g~~h~~ 97 (411)
T 3a4g_A 22 PHPAYAAL-RAEDPVRKLALPDGPVWLLTRYADVREAFVDPR--LSKDWRHTLPEDQRADMPATPTPM-MILMDPPDHTR 97 (411)
T ss_dssp CHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHTCTT--EESCGGGGSCGGGCTTCCSCSSCC-GGGCCTTHHHH
T ss_pred chHHHHHH-HhcCCeeeccCCCCCEEEEecHHHHHHHHhCCC--cccccccccccccccccCcccccc-cccCCchHHHH
Confidence 78889999 899999999999999999999999999998763 8888643210 0 1111 1223 46678999999
Q ss_pred HhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhH-HHHHH-HHHHHHHHHHhccccCCCCchHHHHH
Q 022341 129 MRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLR-RRLQL-MMYNNMYRIMFDRRFESQDDPLFNRL 206 (298)
Q Consensus 129 ~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~-~~~~~i~~~~fG~~~~~~~~~~~~~~ 206 (298)
+||++. +.|+++.++.+.+.++++++.+++.|.+. +++|+ ..+.. .++++|+. +||.+.+. .+ .+
T Consensus 98 ~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~------~~vd~~~~~~~~~~~~vi~~-~~G~~~~~--~~---~~ 164 (411)
T 3a4g_A 98 LRKLVG-RSFTVRRMNELEPRITEIADGLLAGLPTD------GPVDLMREYAFQIPVQVICE-LLGVPAED--RD---DF 164 (411)
T ss_dssp HHHHHH-TTCCHHHHHHHHHHHHHHHHHHHHHSCSS------SCEEHHHHTTTTHHHHHHHH-HHTCCGGG--HH---HH
T ss_pred HHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHhc------CCccHHHHHHHHhHHHHHHH-HhCCCHHH--HH---HH
Confidence 999874 78999999999999999999999999642 23554 34433 44555776 59987542 11 12
Q ss_pred HHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHhhcc-cC-CCCH
Q 022341 207 KALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---NLKCAIDHILDAQT-KG-EINE 281 (298)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~d~ld~ll~~~~-~~-~~t~ 281 (298)
.... ..+... .| + ....+.. +....+....++++ ..+|+++.|++..+ ++ .+|+
T Consensus 165 ~~~~---~~~~~~--------~p---~--~~~~~~~-----~~~~~~~~~~i~~r~~~~~~d~l~~ll~~~~~~~~~ls~ 223 (411)
T 3a4g_A 165 SAWS---SVLVDD--------SP---A--DDKNAAM-----GKLHGYLSDLLERKRTEPDDALLSSLLAVSDEDGDRLSQ 223 (411)
T ss_dssp HHHH---HHHTTS--------SC---T--TTHHHHH-----HHHHHHHHHHHHHHHHSCCSSHHHHHHHCCCTTCCCCCH
T ss_pred HHHH---HHHhcc--------CC---H--HHHHHHH-----HHHHHHHHHHHHHHHhCCCCCHHHHHHHhhccCCCCCCH
Confidence 1111 111111 12 0 1111111 12223333333332 24699999998654 33 5999
Q ss_pred HHHHHHHHHHhhcccCC
Q 022341 282 DNVLYIVENINVAGMFI 298 (298)
Q Consensus 282 ~~i~~~~~~l~~aG~~~ 298 (298)
+++...+.++++||+++
T Consensus 224 ~ei~~~~~~l~~AG~dT 240 (411)
T 3a4g_A 224 EELVAMAMLLLIAGHET 240 (411)
T ss_dssp HHHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHhchhh
Confidence 99999999999999864
No 52
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Probab=99.75 E-value=2.9e-17 Score=147.24 Aligned_cols=216 Identities=13% Similarity=0.172 Sum_probs=138.2
Q ss_pred chHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhhhhcc-------CCCceEEecCChhH
Q 022341 54 NHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTG-------KGQDMVFTVYGEHW 126 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~~~~~-------~~~~~~~~~~g~~W 126 (298)
++..+.+| ++||||++++.| ++++++|+++++||.++ ..+++|+.........+ .....++..+|+.|
T Consensus 31 p~~~~~~l-r~~gpv~~~~~g---~~vv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h 105 (418)
T 3r9b_A 31 PYPIYDRI-RRGGPLALPEAN---LAVFSSFSDCDDVLRHP-SSCSDRTKSTIFQRQLAAETQPRPQGPASFLFLDPPDH 105 (418)
T ss_dssp CHHHHHHH-HHHCCEEEGGGT---EEEECSHHHHHHHHHCT-TEECCGGGCHHHHHHHC---------CCCGGGCCTTHH
T ss_pred chHHHHHH-HhcCCEEECCCC---eEEEecHHHHHHHHcCc-ccccCcccccccccccccccccccccccchhhcCCchH
Confidence 77788888 688999998887 89999999999999654 44566664333322221 01122566789999
Q ss_pred HHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhh-HHHHH-HHHHHHHHHHHhccccCCCCchHHH
Q 022341 127 RKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVL-RRRLQ-LMMYNNMYRIMFDRRFESQDDPLFN 204 (298)
Q Consensus 127 k~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~-~~~~~~i~~~~fG~~~~~~~~~~~~ 204 (298)
+++||++. +.|+++.++.+.+.++++++.+++ +... +.+| ...+. ..++++|++ +||.+.+. ..
T Consensus 106 ~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~-l~~~------~~~d~~~~~~~~~~~~vi~~-~~G~~~~~--~~--- 171 (418)
T 3r9b_A 106 TRLRGLVS-KAFAPRVIKRLEPEITALVDQLLD-AVDG------PEFNLIDNLAYPLPVAVICR-LLGVPIED--EP--- 171 (418)
T ss_dssp HHHHHHHH-GGGSHHHHGGGHHHHHHHHHHHHH-TCCS------SEEEHHHHTTTHHHHHHHHH-HHTCCGGG--HH---
T ss_pred HHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHh-hhcc------CCeehHHHHhCcCCHHHHHH-HcCCCHHH--HH---
Confidence 99999874 899999999999999999999999 7532 2344 34444 345556888 89986542 12
Q ss_pred HHHHHHHHHHhhhhccCCcccccccccc-ccchhhHHHHHHHHHHHHHHHHHHHHHhcc---cCChHHHHHhhcccC-CC
Q 022341 205 RLKALNGERSRLAQSFEYNYGDFIPILR-PFLRGYLKICKEVKERRLQLFKDYFVEERN---LKCAIDHILDAQTKG-EI 279 (298)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~d~~p~l~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~d~ld~ll~~~~~~-~~ 279 (298)
.+......+...... ...++.+. ...+. ..+. .+.+..+....+++++ .+|+++.|++..+++ .+
T Consensus 172 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~----~~~~-~~~l~~~~~~~i~~r~~~~~~d~l~~ll~~~~~~~~l 241 (418)
T 3r9b_A 172 KFSRASALLAAALDP-----FLALTGETSDLFDE----QMKA-GMWLRDYLRALIDERRRTPGEDLMSGLVAVEESGDQL 241 (418)
T ss_dssp HHHHHHHHHHHTTSC-----HHHHHSSCCTTHHH----HHHH-HHHHHHHHHHHHHHTTTSCCSSHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHhhcCc-----cccccccCHHHHHH----HHHH-HHHHHHHHHHHHHHHHhCCCccHHHHHHHhhhccCCC
Confidence 122222111111111 01111111 11111 1111 1234455555565543 579999999865444 59
Q ss_pred CHHHHHHHHHHHhhcccCC
Q 022341 280 NEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 280 t~~~i~~~~~~l~~aG~~~ 298 (298)
|++++...+.++++||+++
T Consensus 242 s~~ei~~~~~~l~~AG~eT 260 (418)
T 3r9b_A 242 TEDEIIATCNLLLIAGHET 260 (418)
T ss_dssp CHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999875
No 53
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=99.75 E-value=3.3e-17 Score=146.73 Aligned_cols=210 Identities=13% Similarity=0.104 Sum_probs=137.5
Q ss_pred chHHHHHHHHHhCCeEEEee-CCeeEEEeCCHHHHHHHHHhcCccccCCCCcch------hhhhcc---CCCceEEecCC
Q 022341 54 NHRNLSDLAKKYGDVLLLRM-GQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVV------FDIFTG---KGQDMVFTVYG 123 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~-g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~------~~~~~~---~~~~~~~~~~g 123 (298)
++..+.+|+ +||||+++++ |+.++|++++|+++++||.++ .|++|+..+. ...+.. .+.+.++..+|
T Consensus 24 p~~~~~~l~-~~Gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 100 (413)
T 2z36_A 24 PPAAYERLR-ERAPINKVRLTSGGQAWWVSGHEEARAVLADG--RFSSDKRKDGFPLFTLDAATLQQLRSQPPLMLGMDG 100 (413)
T ss_dssp CCHHHHHHH-HHCSEEEEEETTSCEEEEECSHHHHHHHHHCT--TEECCTTSTTCCCSSCCHHHHHHHTTSCCCGGGCCH
T ss_pred chHHHHHHH-HcCCeeEeecCCCceEEEEecHHHHHHHHcCC--CcccCccccCccccccccccccccccccccccccCc
Confidence 778889997 7899999997 899999999999999999874 6888763221 112210 13342455789
Q ss_pred hhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHH-HHHHHHHHHHhccccCCCCch
Q 022341 124 EHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQL-MMYNNMYRIMFDRRFESQDDP 201 (298)
Q Consensus 124 ~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~-~~~~~i~~~~fG~~~~~~~~~ 201 (298)
+.|+++||++. +.|+++.++.+.+.++++++.+++.|.+.. ++.+|+. .+.. .+.++|+. +||.+.+. .+
T Consensus 101 ~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~----~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~--~~ 172 (413)
T 2z36_A 101 AEHSAARRPVI-GEFTVKRLAALRPRIQDIVDHFIDDMLATD----QRPVDLVQALSLPVPSLVICE-LLGVPYTD--HD 172 (413)
T ss_dssp HHHHHHHHHHH-GGGSHHHHHHHHHHHHHHHHHHHHHHTTCS----CSSEEHHHHTTTHHHHHHHHH-HHTCCGGG--HH
T ss_pred hHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCccHHHHHhhhhHHHHHHH-HhCCCHHH--HH
Confidence 99999999875 789999999999999999999999997421 1245543 4443 34455777 59986532 11
Q ss_pred HHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHhhccc-C
Q 022341 202 LFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---NLKCAIDHILDAQTK-G 277 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~d~ld~ll~~~~~-~ 277 (298)
.+... ...+.. . ..| +...+. .+....+....++++ ..+|+++.|+++.++ .
T Consensus 173 ---~~~~~---~~~~~~---~----~~~------~~~~~~-----~~~~~~~~~~~i~~r~~~~~~dll~~ll~~~~~~~ 228 (413)
T 2z36_A 173 ---FFQSR---TTMMVS---R----TSM------EDRRRA-----FAELRAYIDDLITRKESEPGDDLFSRQIARQRQEG 228 (413)
T ss_dssp ---HHHHH---HHHTTC---S----SCH------HHHHHH-----HHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHS
T ss_pred ---HHHHH---HHHHhc---c----cCc------HHHHHH-----HHHHHHHHHHHHHHHHhCCCCCHHHHHHHhhcCCC
Confidence 11111 111111 0 001 111111 122333444444433 246999999976433 3
Q ss_pred CCCHHHHHHHHHHHhhcccCC
Q 022341 278 EINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 278 ~~t~~~i~~~~~~l~~aG~~~ 298 (298)
.+|++++...+.++++||+++
T Consensus 229 ~ls~~ei~~~~~~l~~AG~eT 249 (413)
T 2z36_A 229 TLDHAGLVSLAFLLLTAGHET 249 (413)
T ss_dssp CCCHHHHHHHHHHHHHHHSHH
T ss_pred CCCHHHHHHHHHHHHhcchHH
Confidence 699999999999999999864
No 54
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*
Probab=99.75 E-value=1.9e-17 Score=148.62 Aligned_cols=213 Identities=12% Similarity=0.186 Sum_probs=139.1
Q ss_pred chHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCC-----cc-h--hhhhc---cCCCceEEecC
Q 022341 54 NHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTR-----NV-V--FDIFT---GKGQDMVFTVY 122 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~-----~~-~--~~~~~---~~~~~~~~~~~ 122 (298)
++..+.+| ++||||++ + |+.++|++++|+++++||.++. |++|+. .. . ...+. +.+ ++..+
T Consensus 28 p~~~~~~l-~~~Gpv~~-~-~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~ 99 (419)
T 1q5d_A 28 PFPAIERL-REATPIFY-W-DEGRSWVLTRYHDVSAVFRDER--FAVSREEWESSAEYSSAIPELSDMKKYG---LFGLP 99 (419)
T ss_dssp CHHHHHHH-HHHCSEEE-E-TTTTEEEECSHHHHHHHHTCTT--EECCGGGSTTHHHHHHSSGGGHHHHHHS---TTTSC
T ss_pred hHHHHHHH-HhhCCccc-c-CCCCEEEEecHHHHHHHHcCCC--ccccccccccccccccccchhhhhcccc---cccCC
Confidence 67788888 78999999 6 7789999999999999998764 888872 11 1 11221 222 45678
Q ss_pred ChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HH-HHHHHHHHHHHHhccccCCCCc
Q 022341 123 GEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RL-QLMMYNNMYRIMFDRRFESQDD 200 (298)
Q Consensus 123 g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~-~~~~~~~i~~~~fG~~~~~~~~ 200 (298)
|+.|+++||++ .+.|+++.++.+.+.++++++++++.|... +.+|+. .+ ...++++|+++ ||.+.+. .
T Consensus 100 g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~------~~~d~~~~~~~~~~~~vi~~~-fG~~~~~--~ 169 (419)
T 1q5d_A 100 PEDHARVRKLV-NPSFTSRAIDLLRAEIQRTVDQLLDARSGQ------EEFDVVRDYAEGIPMRAISAL-LKVPAEC--D 169 (419)
T ss_dssp HHHHHHHHHHH-GGGGSHHHHGGGHHHHHHHHHHHHHHHTTS------SCEETTTTTGGGSHHHHHHHH-TTCCGGG--H
T ss_pred chHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHHHH-hCCCHHH--H
Confidence 99999999987 588999999999999999999999999752 124432 33 33456668887 9987642 1
Q ss_pred hHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc---ccC-ChHHHHHhhccc
Q 022341 201 PLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---NLK-CAIDHILDAQTK 276 (298)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~-d~ld~ll~~~~~ 276 (298)
+ .+....+.+..... ..++|+.....+.. .+. .+....+....++++ ..+ |+++.|++..++
T Consensus 170 ~---~~~~~~~~~~~~~~------~~~~P~~~~~~~~~----~~~-~~~~~~~~~~~i~~r~~~~~~~dll~~ll~~~~~ 235 (419)
T 1q5d_A 170 E---KFRRFGSATARALG------VGLVPRVDEETKTL----VAS-VTEGLALLHGVLDERRRNPLENDVLTMLLQAEAD 235 (419)
T ss_dssp H---HHHHHHHHHHHHTT------TTTSSCCCSCHHHH----HHH-HHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHS
T ss_pred H---HHHHHHHHHHHhcc------cccccCChHHHHHH----HHH-HHHHHHHHHHHHHHHHhCCCCCCHHHHHHhhhcc
Confidence 1 12222222211111 12345431111111 111 122333444444433 245 999999987544
Q ss_pred C-CCCHHHHHHHHHHHhhcccCC
Q 022341 277 G-EINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 277 ~-~~t~~~i~~~~~~l~~aG~~~ 298 (298)
+ .+|++++...+.++++||+++
T Consensus 236 ~~~l~~~ei~~~~~~l~~AG~dT 258 (419)
T 1q5d_A 236 GSRLSTKELVALVGAIIAAGTDT 258 (419)
T ss_dssp STTCCHHHHHHHHHHHHHHHSHH
T ss_pred CCCCCHHHHHHHHHHHHHHhhHH
Confidence 4 699999999999999999864
No 55
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=99.74 E-value=9.8e-17 Score=142.94 Aligned_cols=209 Identities=10% Similarity=0.024 Sum_probs=137.5
Q ss_pred chHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhhhhccCCCceEEecCChhHHHHhhhh
Q 022341 54 NHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIM 133 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~~ 133 (298)
++..+.++++ |||||++ +. +++++++|+++++||.++. .|++++... .....++ + ++..+|+.|+++||++
T Consensus 20 p~~~~~~l~~-~Gpv~~~--~~-~~vvv~~~~~v~~vl~~~~-~f~~~~~~~-~~~~~~~--~-l~~~~g~~h~~~R~~~ 90 (398)
T 2xkr_A 20 ARAAYRWMRA-NQPVFRD--RN-GLAAASTYQAVIDAERQPE-LFSNAGGIR-PDQPALP--M-MIDMDDPAHLLRRKLV 90 (398)
T ss_dssp HHHHHHHHHH-HCSEEEC--TT-CCEEECSHHHHHHHHTCTT-TEESTTCSS-TTSCCCS--S-GGGCCTTHHHHHHHHH
T ss_pred hhHHHHHHHh-cCCeeec--CC-CeEEEecHHHHHHHHhCcc-cccCccccC-Ccccccc--c-ccccCchHHHHHHHHh
Confidence 6778888887 9999964 44 8999999999999997653 788887432 2222222 2 5567899999999987
Q ss_pred cccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHH-HHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Q 022341 134 TVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQ-LMMYNNMYRIMFDRRFESQDDPLFNRLKALNG 211 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~-~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~ 211 (298)
.+.|+++.++.+.+.++++++++++.|.+. +.+|+. .+. ..++++|+++ ||.+.+. . +.+....+
T Consensus 91 -~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~------~~~d~~~~~~~~~~~~vi~~~-fG~~~~~--~---~~~~~~~~ 157 (398)
T 2xkr_A 91 -NAGFTRKRVKDKEASIAALCDTLIDAVCER------GECDFVRDLAAPLPMAVIGDM-LGVRPEQ--R---DMFLRWSD 157 (398)
T ss_dssp -GGGSCHHHHHTTHHHHHHHHHHHHHTTTTT------SEEEHHHHTTTHHHHHHHHHH-HTCCGGG--H---HHHHHHHH
T ss_pred -hhhhCHHHHHHHHHHHHHHHHHHHHhhhhc------CCccHHHHHHHHHHHHHHHHH-hCCCHHH--H---HHHHHHHH
Confidence 588999999999999999999999998652 135554 444 3556669988 9987542 1 11222222
Q ss_pred HHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHhhcccC-CCCHHHHHHH
Q 022341 212 ERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---NLKCAIDHILDAQTKG-EINEDNVLYI 287 (298)
Q Consensus 212 ~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~d~ld~ll~~~~~~-~~t~~~i~~~ 287 (298)
.+..... ..++|. ..+. ..+. .+....+....++++ ..+|+++.|++...++ .+|++++...
T Consensus 158 ~~~~~~~------~~~~p~---~~~~----~~~~-~~~~~~~~~~~i~~r~~~~~~dll~~ll~~~~~~~~ls~~ei~~~ 223 (398)
T 2xkr_A 158 DLVTFLS------SHVSQE---DFQI----TMDA-FAAYNDFTRATIAARRADPTDDLVSVLVSSEVDGERLSDDELVME 223 (398)
T ss_dssp HHHHHHT------SCCCHH---HHHH----HHHH-HHHHHHHHHHHHHHHHHSCCSSHHHHHHHCCBTTBCCCHHHHHHH
T ss_pred HHHhccC------cccchh---hHHH----HHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHhhccCCCCCHHHHHHH
Confidence 1111111 112231 1111 1111 122333444444433 2579999999875444 5999999999
Q ss_pred HHHHhhcccCC
Q 022341 288 VENINVAGMFI 298 (298)
Q Consensus 288 ~~~l~~aG~~~ 298 (298)
+.++++||+++
T Consensus 224 ~~~l~~AG~eT 234 (398)
T 2xkr_A 224 TLLILIGGDET 234 (398)
T ss_dssp HHHHHHHHSHH
T ss_pred HHHHHHHhhHH
Confidence 99999999863
No 56
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Probab=99.74 E-value=1.1e-16 Score=143.03 Aligned_cols=207 Identities=15% Similarity=0.163 Sum_probs=139.0
Q ss_pred chHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCc--c----------hh-hh---hccCCCce
Q 022341 54 NHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN--V----------VF-DI---FTGKGQDM 117 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~--~----------~~-~~---~~~~~~~~ 117 (298)
++..+.+| ++||||+++++|+.+++++++|+++++||.++ .|++|+.. . .. .. ..+. +
T Consensus 16 p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~- 89 (404)
T 1z8o_A 16 WYRTYAEL-RETAPVTPVRFLGQDAWLVTGYDEAKAALSDL--RLSSDPKKKYPGVEVEFPAYLGFPEDVRNYFAT--N- 89 (404)
T ss_dssp HHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHHCT--TEECCTTCCCTTCCCCCGGGTTCCHHHHHHHSS--S-
T ss_pred cHHHHHHH-HhcCCeeeecCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccchhhhccc--c-
Confidence 77889999 99999999999999999999999999999876 68887643 1 11 11 1232 2
Q ss_pred EEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHH-HHHHHHHHHHhcccc
Q 022341 118 VFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQL-MMYNNMYRIMFDRRF 195 (298)
Q Consensus 118 ~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~-~~~~~i~~~~fG~~~ 195 (298)
++..+|+.|+++||++. +.|+.+.++.+.+.++++++++++.|... +.+|+. .+.. .++++|+. +||.+.
T Consensus 90 l~~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~------~~~d~~~~~~~~~~~~vi~~-~~G~~~ 161 (404)
T 1z8o_A 90 MGTSDPPTHTRLRKLVS-QEFTVRRVEAMRPRVEQITAELLDEVGDS------GVVDIVDRFAHPLPIKVICE-LLGVDE 161 (404)
T ss_dssp GGGCCTTHHHHHHHHHH-TTSCHHHHHHTHHHHHHHHHHHHHTSCSS------SEEEHHHHTTTHHHHHHHHH-HTTCCG
T ss_pred cccCCCcHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHhhhhc------CCcchHHHHhHHHHHHHHHH-HhCCCH
Confidence 45678999999999874 88999999999999999999999988641 235544 4433 44555776 599876
Q ss_pred CCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHh
Q 022341 196 ESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---NLKCAIDHILD 272 (298)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~d~ld~ll~ 272 (298)
+.. +... ...+ .+.. + . .|. .+...+. .+....+....++++ ..+|+++.|++
T Consensus 162 ~~~-~~~~----~~~~---~~~~-~-~-----~p~----~~~~~~~-----~~~~~~~~~~~i~~r~~~~~~dll~~ll~ 217 (404)
T 1z8o_A 162 KYR-GEFG----RWSS---EILV-M-D-----PER----AEQRGQA-----AREVVNFILDLVERRRTEPGDDLLSALIR 217 (404)
T ss_dssp GGT-TTHH----HHHH---HHHC-C-C-----GGG----HHHHHHH-----HHHHHHHHHHHHHHHHHSCCSSHHHHHHH
T ss_pred HHH-HHHH----HHHH---HHhc-c-C-----Chh----HHHHHHH-----HHHHHHHHHHHHHHHHhCCCCCHHHHHHh
Confidence 432 2221 1111 1111 1 0 121 1111111 122333344444333 24699999998
Q ss_pred h-cccC-CCCHHHHHHHHHHHhhcccCC
Q 022341 273 A-QTKG-EINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 273 ~-~~~~-~~t~~~i~~~~~~l~~aG~~~ 298 (298)
. .+++ .+|++++...+.++++||+++
T Consensus 218 ~~~~~~~~l~~~ei~~~~~~~~~AG~~T 245 (404)
T 1z8o_A 218 VQDDDDGRLSADELTSIALVLLLAGFEA 245 (404)
T ss_dssp CEETTTEECCHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCCCCCHHHHHHHHHHHHhcchHH
Confidence 6 4444 599999999999999999863
No 57
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Probab=99.73 E-value=8.1e-17 Score=144.37 Aligned_cols=209 Identities=11% Similarity=0.103 Sum_probs=137.2
Q ss_pred chHHHHHHHHHhCCeEEEee-CCeeEEEeCCHHHHHHHHHhcCccccCCCCc-ch---hhhhccCCCceEEecCChhHHH
Q 022341 54 NHRNLSDLAKKYGDVLLLRM-GQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN-VV---FDIFTGKGQDMVFTVYGEHWRK 128 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~-g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~-~~---~~~~~~~~~~~~~~~~g~~Wk~ 128 (298)
++..+.+| ++||||+++++ |+.++|+++||+++++||.++ .|++++.. .. ..... .+.+ ++..+|+.|++
T Consensus 39 p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~i~~vl~~~--~f~~~~~~~~~~~~~~~~~-~~~~-l~~~dg~~h~~ 113 (417)
T 2y5n_A 39 LAGRYGEL-QETEPVSRVRPPYGEEAWLVTRYEDVRAVLGDG--RFVRGPSMTRDEPRTRPEM-VKGG-LLSMDPPEHSR 113 (417)
T ss_dssp CCHHHHHH-HHHCSEEEEECSBSCCEEEECSHHHHHHHHTCT--TEESGGGGTSCCCBSSSSC-CCCS-GGGCCTTHHHH
T ss_pred chHHHHHH-HhcCCeEeeccCCCceEEEECCHHHHHHHHcCC--CcccCccccccccccCccc-cccc-CccCCchHHHH
Confidence 77889999 89999999997 899999999999999999865 47766532 11 11111 1223 45678999999
Q ss_pred HhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHH-HHHHHHHHHHhccccCCCCchHHHHH
Q 022341 129 MRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQL-MMYNNMYRIMFDRRFESQDDPLFNRL 206 (298)
Q Consensus 129 ~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~-~~~~~i~~~~fG~~~~~~~~~~~~~~ 206 (298)
+||++. +.|+++.++.+.+.++++++++++.|... +..+|+. .+.. .++++|+. +||.+.+. .+ .+
T Consensus 114 ~R~~l~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~-----~~~vdl~~~~~~~~~~~vi~~-~~G~~~~~--~~---~~ 181 (417)
T 2y5n_A 114 LRRLVV-KAFTARRAESLRPRAREIAHELVDQMAAT-----GQPADLVAMFARQLPVRVICE-LLGVPSAD--HD---RF 181 (417)
T ss_dssp HHHHHH-HHSCHHHHHHTHHHHHHHHHHHHHHHHHH-----CSSEEHHHHTTTTHHHHHHHH-HHTCCGGG--HH---HH
T ss_pred HHHHHh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeeHHHHHHHHhHHHHHHH-HcCCCHHH--HH---HH
Confidence 999875 78899999999999999999999999731 1135543 4433 44555776 79986532 11 11
Q ss_pred HHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHhhcccC-CCCHH
Q 022341 207 KALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---NLKCAIDHILDAQTKG-EINED 282 (298)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~d~ld~ll~~~~~~-~~t~~ 282 (298)
... ...+...+ . .| .+...+. .+.+..+....++++ ..+|+++.|+++.+++ .+|++
T Consensus 182 ~~~---~~~~~~~~-----~-~~-----~~~~~~~-----~~~l~~~~~~~i~~r~~~~~~dll~~ll~~~~~~~~ls~~ 242 (417)
T 2y5n_A 182 TRW---SGAFLSTA-----E-VT-----AEEMQEA-----AEQAYAYMGDLIDRRRKEPTDDLVSALVQARDQQDSLSEQ 242 (417)
T ss_dssp HHH---HHTTSTTC-----C-CC-----HHHHHHH-----HHHHHHHHHHHHHHHHHSCCSSHHHHHHHCCBTTBCCCHH
T ss_pred HHH---HHHHhccc-----C-CC-----HHHHHHH-----HHHHHHHHHHHHHHHHhCCCCCHHHHHHhhhccCCCCCHH
Confidence 111 11111100 0 11 1111111 112233334444333 2579999999875444 69999
Q ss_pred HHHHHHHHHhhcccCC
Q 022341 283 NVLYIVENINVAGMFI 298 (298)
Q Consensus 283 ~i~~~~~~l~~aG~~~ 298 (298)
++...+.++++||+++
T Consensus 243 ei~~~~~~l~~AG~eT 258 (417)
T 2y5n_A 243 ELLDLAIGLLVAGYES 258 (417)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHH
Confidence 9999999999999863
No 58
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.73 E-value=1.5e-16 Score=142.35 Aligned_cols=209 Identities=15% Similarity=0.205 Sum_probs=135.0
Q ss_pred chHHHHHHHHHhCCeEEEee-CCeeEEEeCCHHHHHHHHHhcCccccCCCC-cchhh--------hhcc--C-CCceEEe
Q 022341 54 NHRNLSDLAKKYGDVLLLRM-GQRNLVVVSSPDHAKEVLHTQGVEFGSRTR-NVVFD--------IFTG--K-GQDMVFT 120 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~-g~~~~vvi~~p~~i~evl~~~~~~f~~r~~-~~~~~--------~~~~--~-~~~~~~~ 120 (298)
++..+.+| ++||||+++++ |+.++|+++||+++++||.++. ++.++. ..... .+.+ . +.+ +++
T Consensus 19 p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~ 94 (411)
T 1gwi_A 19 LDGESARL-RAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPR--LVKDINVWGAWRRGEIPADWPLIGLANPGRS-MLT 94 (411)
T ss_dssp HHHHHHHH-HHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTT--EECCGGGCHHHHTTCSCTTCTTHHHHSCCSS-GGG
T ss_pred hHHHHHHH-HHhCCeeeeecCCCccEEEEeCHHHHHHHHcCCc--cccCcccccccccccCCcccchhhhhccccc-ccc
Confidence 77889999 99999999998 8999999999999999998653 444441 11110 0100 1 222 566
Q ss_pred cCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHH-HHHHHHHHHHhccccCCC
Q 022341 121 VYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQL-MMYNNMYRIMFDRRFESQ 198 (298)
Q Consensus 121 ~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~-~~~~~i~~~~fG~~~~~~ 198 (298)
.+|+.|+++||++ .+.|+++.++.+.+.++++++++++.|.+ . ++++|+. .+.. .++++|+. +||.+.+.
T Consensus 95 ~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~-~----~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~- 166 (411)
T 1gwi_A 95 VDGAEHRRLRTLV-AQALTVRRVEHMRGRITELTDRLLDELPA-D----GGVVDLKAAFAYPLPMYVVAD-LMGIEEAR- 166 (411)
T ss_dssp CCHHHHHHHHHHH-TTTSCHHHHHTTHHHHHHHHHHHHHTSCC-S----CCCEEHHHHTTTHHHHHHHHH-HHTCCGGG-
T ss_pred CCcHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHH-c----CCCcchHHHHhhHHHHHHHHH-HhCCCHHH-
Confidence 7899999999987 48899999999999999999999999863 1 1245554 3433 34455774 79986532
Q ss_pred CchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHhhcc
Q 022341 199 DDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---NLKCAIDHILDAQT 275 (298)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~d~ld~ll~~~~ 275 (298)
. ..+.... ..+... . .+ .+...+. .+.+..+....++++ ..+|+++.|+++.+
T Consensus 167 -~---~~~~~~~---~~~~~~---~----~~-----~~~~~~~-----~~~~~~~~~~~i~~r~~~~~~d~l~~ll~~~~ 222 (411)
T 1gwi_A 167 -L---PRLKVLF---EKFFST---Q----TP-----PEEVVAT-----LTELASIMTDTVAAKRAAPGDDLTSALIQASE 222 (411)
T ss_dssp -H---HHHHHHH---HHHHCT---T----SC-----HHHHHHH-----HHHHHHHHHHHHHHHHHSCCSSHHHHHHHCCB
T ss_pred -H---HHHHHHH---HHHhcc---C----CC-----hHHHHHH-----HHHHHHHHHHHHHHHHhCCCCCHHHHHHHhcc
Confidence 1 1111111 111110 0 01 0111111 112233333444332 24799999998754
Q ss_pred cC-CCCHHHHHHHHHHHhhcccCC
Q 022341 276 KG-EINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 276 ~~-~~t~~~i~~~~~~l~~aG~~~ 298 (298)
++ .+|++++...+.++++||+++
T Consensus 223 ~~~~l~~~~i~~~~~~~~~AG~dT 246 (411)
T 1gwi_A 223 NGDHLTDAEIVSTLQLMVAAGHET 246 (411)
T ss_dssp TTBCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhH
Confidence 33 699999999999999999863
No 59
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=99.72 E-value=8.7e-17 Score=144.04 Aligned_cols=209 Identities=12% Similarity=0.052 Sum_probs=137.0
Q ss_pred chHHHHHHHHHhCCeE-----EEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcc-hhh--hh-c-cCCCceEEecCC
Q 022341 54 NHRNLSDLAKKYGDVL-----LLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV-VFD--IF-T-GKGQDMVFTVYG 123 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~-----~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~-~~~--~~-~-~~~~~~~~~~~g 123 (298)
++..+.+|. +||||+ +++. .+++++++|+++++||.++ ..|++|+... ... .+ . ..+.+ ++..+|
T Consensus 27 p~~~~~~l~-~~Gpv~~~~~~~~~~--~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~-l~~~~g 101 (414)
T 2uuq_A 27 PWPMYRALR-DHDPVHHVVPPQRPE--YDYYVLSRHADVWSAARDH-QTFSSAQGLTVNYGELEMIGLHDTPP-MVMQDP 101 (414)
T ss_dssp CHHHHHHHH-HHCSEEEECCTTCGG--GCEEEECSHHHHHHHHHCT-TTEESTTCSSSCTTHHHHHTCSSSCC-GGGCCT
T ss_pred chHHHHHHH-hcCCEEcccccccCC--CCEEEEcCHHHHHHHHcCc-hhccCCCCcccccCcccccccccccc-cccCCc
Confidence 677788884 799999 8776 6899999999999999876 6788887542 121 22 1 11223 455689
Q ss_pred hhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHH-HHHHHHHHHHHhccccCCCCch
Q 022341 124 EHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQ-LMMYNNMYRIMFDRRFESQDDP 201 (298)
Q Consensus 124 ~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~-~~~~~~i~~~~fG~~~~~~~~~ 201 (298)
+.|+++||++ .+.|+++.++.+.+.++++++++++.|.+. +.+|+. .+. ..++++|++ +||.+.+. .+
T Consensus 102 ~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~------~~vdl~~~~~~~~~~~vi~~-~~G~~~~~--~~ 171 (414)
T 2uuq_A 102 PVHTEFRKLV-SRGFTPRQVETVEPTVRKFVVERLEKLRAN------GGGDIVTELFKPLPSMVVAH-YLGVPEED--WT 171 (414)
T ss_dssp THHHHHHHHH-HTTSSHHHHHHHHHHHHHHHHHHHHHHHHT------TEEEHHHHTTTHHHHHHHHH-HTTCCGGG--HH
T ss_pred hhHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhc------CCccHHHHHHHHhHHHHHHH-HhCCCHHH--HH
Confidence 9999999987 588999999999999999999999999753 135553 443 455666887 69987642 11
Q ss_pred HHHHHHHHHHHHHhhhhccCCcccccc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHhcc---cCChHHHHHhhcc--
Q 022341 202 LFNRLKALNGERSRLAQSFEYNYGDFI-PILRPFLRGYLKICKEVKERRLQLFKDYFVEERN---LKCAIDHILDAQT-- 275 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~d~~-p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~d~ld~ll~~~~-- 275 (298)
. +....+. +... .++ |... ...+.. +....+....+++++ .+|+++.|++...
T Consensus 172 ~---~~~~~~~---~~~~------~~~~p~~~----~~~~~~-----~~~~~~~~~~i~~r~~~~~~dll~~ll~~~~~~ 230 (414)
T 2uuq_A 172 Q---FDGWTQA---IVAA------NAVDGATT----GALDAV-----GSMMAYFTGLIERRRTEPADDAISHLVAAGVGA 230 (414)
T ss_dssp H---HHHHHHH---HHHH------HHC---------CCHHHH-----HHHHHHHHHHHHHHTTSCCSSHHHHHHHTTTTC
T ss_pred H---HHHHHHH---HHhh------cccCCchh----HHHHHH-----HHHHHHHHHHHHHHHhCCCCCHHHHHHhccccc
Confidence 1 2222111 1110 112 3211 111111 122333444444332 4699999998653
Q ss_pred cC-CCCHHHHHHHHHHHhhcccCC
Q 022341 276 KG-EINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 276 ~~-~~t~~~i~~~~~~l~~aG~~~ 298 (298)
++ .+|++++...+.++++||+++
T Consensus 231 ~~~~ls~~ei~~~~~~l~~AG~eT 254 (414)
T 2uuq_A 231 DGDTAGTLSILAFTFTMVTGGNDT 254 (414)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHSHH
T ss_pred CCCCCCHHHHHHHHHHHHHhhHHH
Confidence 33 489999999999999999864
No 60
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=99.71 E-value=3.4e-17 Score=148.86 Aligned_cols=163 Identities=12% Similarity=0.113 Sum_probs=109.0
Q ss_pred CCCCCCCCCCCccccccccCC----CC-cchHHHHHHHHHhCC-eEEEeeCCe-------eEEEeCCHHHHHHHHHh---
Q 022341 30 RFKLPPGPLPVPVFGNWLQVG----DD-LNHRNLSDLAKKYGD-VLLLRMGQR-------NLVVVSSPDHAKEVLHT--- 93 (298)
Q Consensus 30 ~~~~ppGP~~~PiiGnl~~l~----~~-~~~~~~~~~~~~yG~-i~~~~~g~~-------~~vvi~~p~~i~evl~~--- 93 (298)
+.+.+|||.|||++||++++. .. .++..+.++.++||+ ||++++++. ..|++++++..+.++..
T Consensus 7 Pl~~iPGp~g~P~iG~~~~~~~~~~~~g~~~~~~~~~~~kyG~~vf~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~ 86 (473)
T 3dan_A 7 PLREIPGSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPGPFVSSNPKVIVLLDAKSFPILFDVSKV 86 (473)
T ss_dssp CBCCCCCCCCSTTHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSEEEEECTTCTTTCSCCEEEEECSTTTGGGGGCTTTE
T ss_pred CCCCCCCCCCCcchhhHHHHHHHHHhhcCchHHHHhHHHHhCCeEEEecCCCCCccccCCceEEeecccccceecCCcce
Confidence 445679999999999998752 22 367889999999999 999998743 44555665544444431
Q ss_pred -cCccccCCCCcchhhhhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCCh
Q 022341 94 -QGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGI 172 (298)
Q Consensus 94 -~~~~f~~r~~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 172 (298)
+...+.++.. .....+.+.....++..+|+.|+++||++. +.|+++ ++.+.+.++++++++++.|.+.... .++
T Consensus 87 ~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~h~~~R~~~~-~~f~~~-~~~~~~~i~~~~~~ll~~~~~~~~~--~~~ 161 (473)
T 3dan_A 87 EKKDLFTGTYM-PSTKLTGGYRVLSYLDPSEPRHAQLKNLLF-FMLKNS-SNRVIPQFETTYTELFEGLEAELAK--NGK 161 (473)
T ss_dssp ECSSCTTSSSC-CCGGGGTTSCCGGGCCTTSHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HSC
T ss_pred ecccccccccc-CCccccCCCcceeeeCCCcHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcc--CCc
Confidence 2222222211 111222222223456678999999999874 777775 7889999999999999999752211 123
Q ss_pred hhHH-HHHHHHHHHHHHHHhccccCC
Q 022341 173 VLRR-RLQLMMYNNMYRIMFDRRFES 197 (298)
Q Consensus 173 ~~~~-~~~~~~~~~i~~~~fG~~~~~ 197 (298)
+|+. .+...+++++++++||.+.+.
T Consensus 162 vdl~~~~~~~~~~~i~~~~~G~~~~~ 187 (473)
T 3dan_A 162 AAFNDVGEQAAFRFLGRAYFNSNPEE 187 (473)
T ss_dssp EECHHHHHHHHHHHHHHHHHSCCGGG
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 4543 455556667999999998765
No 61
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=99.71 E-value=1.8e-16 Score=141.14 Aligned_cols=208 Identities=13% Similarity=0.095 Sum_probs=135.1
Q ss_pred chHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhhhhccCCCceEEecCChhHHHHhhhh
Q 022341 54 NHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIM 133 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~~ 133 (298)
++..+.+|+++ |||++++.|+ +.+++++|+++++++.+ ...|++|+..... ...+.+...+++.+|+.|+++||++
T Consensus 26 p~~~~~~l~~~-Gpv~~~~~~~-~~~vv~~~~~v~~vl~~-~~~f~~~~~~~~~-~~~~~~~~~~~~~~g~~h~~~R~~~ 101 (396)
T 3oft_A 26 YFAAWKTLLDG-PGLVWSTANG-GHWIAARGDVVRELWGD-AERLSSQCLAVTP-GLGKVMQFIPLQQDGAEHKAFRTPV 101 (396)
T ss_dssp HHHHHHGGGGS-CSEEEECSTT-SEEEECSHHHHHHHHHC-TTTEESTTCCSST-THHHHHCCTTTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHhc-CCeeeecCCC-CEEEEcCHHHHHHHHcC-cccccCCcccCCC-ccccccccCccccCCcHHHHHHHHh
Confidence 78889999988 9999999884 58889999999999954 4688888732211 1111111225667899999999987
Q ss_pred cccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhh-HHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Q 022341 134 TVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVL-RRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGE 212 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~ 212 (298)
.+.|+++.++.+.+.++++++++++.|.+.. .+| ...+...++..++..+||...+. ...+...
T Consensus 102 -~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~------~~d~~~~~~~~~~~~v~~~~~G~~~~~-----~~~~~~~--- 166 (396)
T 3oft_A 102 -MKGLASRFVVALEPKVQAVARKLMESLRPRG------SCDFVSDFAEILPLNIFLTLIDVPLED-----RPRLRQL--- 166 (396)
T ss_dssp -HHHTCHHHHHHHHHHHHHHHHHHHHHHGGGS------EEEHHHHTTTTHHHHHHHHHTTCCGGG-----HHHHHHH---
T ss_pred -hhhhCHHHHHHHHHHHHHHHHHHHHHhhhcC------CccHHHHHHHHHHHHHHHHHcCCCHHH-----HHHHHHH---
Confidence 4899999999999999999999999997532 233 34444444455444578874321 1111111
Q ss_pred HHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHhhcccC-CCCHHHHHHHH
Q 022341 213 RSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---NLKCAIDHILDAQTKG-EINEDNVLYIV 288 (298)
Q Consensus 213 ~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~d~ld~ll~~~~~~-~~t~~~i~~~~ 288 (298)
...+.... . .+...+.. +....+....++++ ..+|+++.|++...++ .+|++++...+
T Consensus 167 ~~~~~~~~--------~-----~~~~~~~~-----~~~~~~~~~~i~~r~~~~~~d~l~~ll~~~~~~~~l~~~el~~~~ 228 (396)
T 3oft_A 167 GVQLTRPD--------G-----SMTVEQLK-----QAADDYLWPFIEKRMAQPGDDLFSRILSEPVGGRPWTVDEARRMC 228 (396)
T ss_dssp HHHHHSCC--------S-----SCCHHHHH-----HHHHHHHHHHHHHHHHSCCSSHHHHHHTSCBTTBCCCHHHHHHHH
T ss_pred HHHHhCCC--------C-----HHHHHHHH-----HHHHHHHHHHHHHHHhCCCCCHHHHHHHhhccCCCCCHHHHHHHH
Confidence 11111110 0 01111111 12223333333332 3679999999875544 69999999999
Q ss_pred HHHhhcccCC
Q 022341 289 ENINVAGMFI 298 (298)
Q Consensus 289 ~~l~~aG~~~ 298 (298)
.++++||+++
T Consensus 229 ~~l~~AG~dT 238 (396)
T 3oft_A 229 RNLLFGGLDT 238 (396)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhHH
Confidence 9999999863
No 62
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}
Probab=99.70 E-value=4.1e-16 Score=138.86 Aligned_cols=211 Identities=10% Similarity=0.106 Sum_probs=133.2
Q ss_pred chHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchh------hhhccC-CCceEEecCChhH
Q 022341 54 NHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVF------DIFTGK-GQDMVFTVYGEHW 126 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~------~~~~~~-~~~~~~~~~g~~W 126 (298)
++..+.++ ++||||++ + | .+++++++|+++++||.+ ..|++++..... ..+.+. +.+ ++..+|+.|
T Consensus 15 p~~~~~~l-~~yGpv~~-~-g-~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~g~~h 87 (397)
T 3buj_A 15 PYPSYHWL-LRHDPVHR-G-A-HRVWYVSRFADVRAVLGD--ERFARTGIRRFWTDLVGPGLLAEIVGDI-ILFQDEPDH 87 (397)
T ss_dssp CHHHHHHH-HHHCSEEE-C-G-GGCEEECSHHHHHHHHTC--TTEESHHHHHHHHHHHCSSHHHHHHTTC-GGGCCTTHH
T ss_pred chHHHHHH-HhcCCeee-C-C-CCeEEEcCHHHHHHHHcC--CCcccCcccccccccccccccccccccc-cccCCchhH
Confidence 56667666 68999999 7 5 789999999999999975 367766432111 011110 222 456789999
Q ss_pred HHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhH-HHHHH-HHHHHHHHHHhccccCCCCchHHH
Q 022341 127 RKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLR-RRLQL-MMYNNMYRIMFDRRFESQDDPLFN 204 (298)
Q Consensus 127 k~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~-~~~~~i~~~~fG~~~~~~~~~~~~ 204 (298)
+++||++. +.|+++.++.+.+.++++++++++.|... +++|+ ..+.. .++++|+.+ ||.+.+. . +
T Consensus 88 ~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~------~~~dl~~~~~~~~~~~vi~~~-~G~~~~~--~---~ 154 (397)
T 3buj_A 88 GRLRGVVG-PAFSPSALRRLEPVIAGTVDDLLRPALAR------GAMDVVDELAYPLALRAVLGL-LGLPAAD--W---G 154 (397)
T ss_dssp HHHHHHHG-GGSSTTTTGGGHHHHHHHHHHHHHHHHTT------TEEEHHHHTHHHHHHHHHHHH-HTCCGGG--H---H
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHhhc------CCeehHHHHHHHhHHHHHHHH-hCCCHHH--H---H
Confidence 99999975 78898888999999999999999999742 23554 34443 445568887 9987642 1 1
Q ss_pred HHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHhhcccCCCCH
Q 022341 205 RLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---NLKCAIDHILDAQTKGEINE 281 (298)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~d~ld~ll~~~~~~~~t~ 281 (298)
.+....+. +...+.. .+|. ...+. ..+. .+.+..+....++++ ..+|+++.|++..+++.+|+
T Consensus 155 ~~~~~~~~---~~~~~~~----~~~~--~~~~~----~~~~-~~~~~~~~~~~i~~r~~~~~~dll~~ll~~~~~~~ls~ 220 (397)
T 3buj_A 155 AVGRWSRD---VGRTLDR----GASA--EDMRR----GHAA-IAEFADYVERALARRRREGGEDLLALMLDAHDRGLMSR 220 (397)
T ss_dssp HHHHHHHH---HHGGGCS----SCCH--HHHHH----HHHH-HHHHHHHHHHHHHHHHHHCCCSHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHH---HHhhcCC----CCCh--HHHHH----HHHH-HHHHHHHHHHHHHHHHcCCCCCHHHHHHHhhhcCCCCH
Confidence 12222211 2111111 0111 01111 1111 122333444444333 25799999998754444999
Q ss_pred HHHHHHHHHHhhcccCC
Q 022341 282 DNVLYIVENINVAGMFI 298 (298)
Q Consensus 282 ~~i~~~~~~l~~aG~~~ 298 (298)
+++...+.++++||+++
T Consensus 221 ~ei~~~~~~~~~AG~~T 237 (397)
T 3buj_A 221 NEIVSTVVTFIFTGHET 237 (397)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchH
Confidence 99999999999999863
No 63
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Probab=99.69 E-value=9.6e-17 Score=144.91 Aligned_cols=213 Identities=11% Similarity=0.079 Sum_probs=124.3
Q ss_pred chHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhhhhccCCCceEEecCChhHHHHhhhh
Q 022341 54 NHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIM 133 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~~ 133 (298)
++..+.++ ++||||+++..++ .+++++|+++++||.++.. |++++.........+. +.++..+|+.|+++||++
T Consensus 55 p~~~~~~l-r~~gpv~~~~~~~--~~vv~~~~~v~~vl~~~~~-f~~~~~~~~~~~~~~~--~~l~~~dg~~h~~~Rr~~ 128 (441)
T 3nc3_A 55 PYAYFSQL-REEDPVHYEESID--SYFISRYHDVRYILQHPDI-FTTKSLVERAEPVMRG--PVLAQMHGKEHSAKRRIV 128 (441)
T ss_dssp GGGTHHHH-HHHCSEEEETTTT--EEEECCHHHHHHHHHCTTT-EECCCTTSCCCCSCC---------------CCHHHH
T ss_pred hHHHHHHH-HhcCCEEEeCCCC--EEEEcCHHHHHHHhcCccc-ccccccccccccccCC--CccccCCcHHHHHHHHHH
Confidence 45566665 6899999987666 8999999999999977654 8888754433333332 235677899999999987
Q ss_pred cccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhh-HHHHHH-HHHHHHHHHHhccccCCCCchHHHHHHHHHH
Q 022341 134 TVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVL-RRRLQL-MMYNNMYRIMFDRRFESQDDPLFNRLKALNG 211 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~-~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~ 211 (298)
.+.|+++.++.+.+.++++++++++.|.... .+| ...+.. .+..+|+. +||.+.+. . ..+....+
T Consensus 129 -~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~------~~dl~~~~~~~~~~~vi~~-l~G~~~~~--~---~~~~~~~~ 195 (441)
T 3nc3_A 129 -VRSFIGDALDHLSPLIKQNAENLLAPYLERG------KSDLVNDFGKTFAVCVTMD-MLGLDKRD--H---EKISEWHS 195 (441)
T ss_dssp -HHHHHHTHHHHHHHHHHHHHHHHHTTTTTTT------EEECCCCCHHHHHHHHHHH-HTTCCGGG--H---HHHHHHHH
T ss_pred -HhhcCHHHHHHHHHHHHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHHHH-HcCCCHHH--H---HHHHHHHH
Confidence 5899999999999999999999999886432 223 233333 33445776 68976532 1 11222221
Q ss_pred HHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcc---cCChHHHHHhhcccC-CCCHHHHHHH
Q 022341 212 ERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERN---LKCAIDHILDAQTKG-EINEDNVLYI 287 (298)
Q Consensus 212 ~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~d~ld~ll~~~~~~-~~t~~~i~~~ 287 (298)
.+......+. .+. ..... ..+. .+.+..+....+++++ .+|+++.|++...++ .+|++++...
T Consensus 196 ~~~~~~~~~~------~~~--~~~~~----~~~~-~~~l~~~~~~~i~~rr~~~~~Dll~~Ll~~~~~~~~ls~~el~~~ 262 (441)
T 3nc3_A 196 GVADFITSIS------QSP--EARAH----SLWC-SEQLSQYLMPVIKERRVNPGSDLISILCTSEYEGMALSDKDILAL 262 (441)
T ss_dssp HHHHHHHCSC------CCH--HHHHH----HHHH-HHHHHHHHHHHHHHHTTSCCSSHHHHHCC------CCCHHHHHHH
T ss_pred HHHHhccccc------CCh--HHHHH----HHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHhhccCCCCCHHHHHHH
Confidence 1111111100 010 00111 1111 1233445555555443 579999999865443 6999999999
Q ss_pred HHHHhhcccCC
Q 022341 288 VENINVAGMFI 298 (298)
Q Consensus 288 ~~~l~~aG~~~ 298 (298)
+.++++||+++
T Consensus 263 ~~~ll~AG~eT 273 (441)
T 3nc3_A 263 ILNVLLAATEP 273 (441)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhhHH
Confidence 99999999863
No 64
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}
Probab=99.69 E-value=4e-16 Score=139.71 Aligned_cols=210 Identities=14% Similarity=0.115 Sum_probs=134.4
Q ss_pred chHHHHHHHHHhCCeEEEe-eCC-eeEEEeCCHHHHHHHHHhcCccccCCCCcchhhh---hccCCCceEEecCChhHHH
Q 022341 54 NHRNLSDLAKKYGDVLLLR-MGQ-RNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDI---FTGKGQDMVFTVYGEHWRK 128 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~-~g~-~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~~---~~~~~~~~~~~~~g~~Wk~ 128 (298)
++..+.++.+ ||||+++. .|. .++++|+++++|++|| ++...|++++....... ..+.+...++..+|+.|++
T Consensus 39 p~~~~~~lr~-~gpV~~~~~~g~~~~~~vv~~~~~v~~vl-~~~~~fs~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h~~ 116 (415)
T 3mgx_A 39 RHARWRELAA-EDAMVWSDPGSSPSGFWSVFSHRACAAVL-APSAPLTSEYGMMIGFDRDHPDNSGGRMMVVSEHEQHRK 116 (415)
T ss_dssp HHHHHHHHHH-HTCCEEECSSSSSSCEEEECSHHHHHHHS-CTTSSEECTTCSSTTCCSSSCCTTTTTSGGGCCHHHHHH
T ss_pred hhHHHHHHHh-cCCEeeccCCCCcCCEEEEecHHHHHHHH-hChhhhcCCccccccccccccccccCCCccccCcHHHHH
Confidence 6778888876 99999996 554 7899999999999999 44457888875432111 1111022356788999999
Q ss_pred HhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhH-HHHHH-HHHHHHHHHHhccccCCCCchHHHHH
Q 022341 129 MRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLR-RRLQL-MMYNNMYRIMFDRRFESQDDPLFNRL 206 (298)
Q Consensus 129 ~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~-~~~~~i~~~~fG~~~~~~~~~~~~~~ 206 (298)
+||++ .+.|+++.++.+.+.++++++++++.|.+.. .+|+ ..+.. .++++|++ +||...+. ...+
T Consensus 117 ~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~------~~dl~~~~~~~~~~~vi~~-l~G~~~~~-----~~~~ 183 (415)
T 3mgx_A 117 LRKLV-GPLLSRAAARKLAERVRIEVGDVLGRVLDGE------VCDAATAIGPRIPAAVVCE-ILGVPAED-----EDML 183 (415)
T ss_dssp HHHHH-GGGSSHHHHHHSHHHHHHHHHHHTTTSSSSS------CEESTTTTTTHHHHHHHHH-HHTCCGGG-----HHHH
T ss_pred HHHHh-HhhhCHHHHHHHHHHHHHHHHHHHHHHHhcC------CcchHHHHHHHHHHHHHHH-HcCCCHHH-----HHHH
Confidence 99987 5889999999999999999999999886532 2332 23423 45556777 58964321 1122
Q ss_pred HHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHhhcccCCCCHHH
Q 022341 207 KALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---NLKCAIDHILDAQTKGEINEDN 283 (298)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~d~ld~ll~~~~~~~~t~~~ 283 (298)
... ...+.... ...+.|. .. .+.. +.+..+....++++ ..+|+++.|+++. .+|+++
T Consensus 184 ~~~---~~~~~~~~---~~~~~~~-----~~-~~~~-----~~l~~~~~~~i~~rr~~~~~dll~~ll~~~---~ls~~e 243 (415)
T 3mgx_A 184 IDL---TNHAFGGE---DELFDGM-----TP-RQAH-----TEILVYFDELITARRKEPGDDLVSTLVTDD---DLTIDD 243 (415)
T ss_dssp HHH---HHHHTSCC---C----CC-----CH-HHHH-----HHHHHHHHHHHHHHHHSCCSSHHHHHHHCT---TSCHHH
T ss_pred HHH---HHHHHccc---CcccchH-----HH-HHHH-----HHHHHHHHHHHHHHHhCCCCCHHHHHHhCC---CCCHHH
Confidence 221 11222111 1122221 11 1111 12233333444333 2579999999864 699999
Q ss_pred HHHHHHHHhhcccCC
Q 022341 284 VLYIVENINVAGMFI 298 (298)
Q Consensus 284 i~~~~~~l~~aG~~~ 298 (298)
+...+.++++||+++
T Consensus 244 l~~~~~~ll~AG~eT 258 (415)
T 3mgx_A 244 VLLNCDNVLIGGNET 258 (415)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHH
Confidence 999999999999875
No 65
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=99.68 E-value=2.2e-15 Score=134.48 Aligned_cols=204 Identities=16% Similarity=0.206 Sum_probs=133.4
Q ss_pred chHHHHHHHHHhCCeEEEee-CCeeEEEeCCHHHHHHHHHhcCccccCCCCcc-hhhhhccCCCce-EEecCC------h
Q 022341 54 NHRNLSDLAKKYGDVLLLRM-GQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV-VFDIFTGKGQDM-VFTVYG------E 124 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~-g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~-~~~~~~~~~~~~-~~~~~g------~ 124 (298)
++..+.+| ++||||+++++ |+.++|++++|+++++||.++ .|++++... ....... +.+. ++..+| +
T Consensus 28 p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~-~~~~~l~~~~g~~~~~~~ 103 (404)
T 2xbk_A 28 LSPLLRAL-QDRGPIHRVRTPAGDEAWLVTRHAELKQLLHDE--RIGRTHPDPPSAAQYVR-SPFLDLLISDADAESGRR 103 (404)
T ss_dssp CCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHTTCT--TEESBCSSGGGSCCSSC-CHHHHTTCBCSCHHHHHH
T ss_pred ccHHHHHH-HhhCCEeeeccCCCceEEEEcCHHHHHHHHcCC--CCCCCccccccCCcccc-cccccceeeCCCCCCCCc
Confidence 67889999 89999999997 899999999999999999765 477765432 1112111 2231 455689 9
Q ss_pred hHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHHHH-HHHHHHHHhccccCCCCchH
Q 022341 125 HWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQLMM-YNNMYRIMFDRRFESQDDPL 202 (298)
Q Consensus 125 ~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~-~~~i~~~~fG~~~~~~~~~~ 202 (298)
.|+++||++. +.|+++.++.+.+.++++++++++.|... ++++|+. .+...+ .++|+. +||.+.+. ..
T Consensus 104 ~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~-----g~~~d~~~~~~~~~~~~vi~~-~~G~~~~~--~~- 173 (404)
T 2xbk_A 104 QHAETRRLLT-PLFSARRVLEMQPKVEEAADTLLDAFIAQ-----GPPGDLHGELTVPFALTVLCE-VIGVPPQR--RA- 173 (404)
T ss_dssp HHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHHT-----CSSEEHHHHTHHHHHHHHHHH-HHTCCGGG--HH-
T ss_pred hHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCeeHHHHHHHHHHHHHHHH-HhCCCHHH--HH-
Confidence 9999999874 78999889999999999999999999742 1235554 444434 445765 79986532 11
Q ss_pred HHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHhhcccCCC
Q 022341 203 FNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---NLKCAIDHILDAQTKGEI 279 (298)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~d~ld~ll~~~~~~~~ 279 (298)
.+... ...+... . .| + ...+.. +....+....++++ ..+|+++.| + ++.+
T Consensus 174 --~~~~~---~~~~~~~---~----~~---p---~~~~~~-----~~~~~~~~~~i~~r~~~~~~dll~~l-~---~~~l 226 (404)
T 2xbk_A 174 --ELTTL---LAGIAKL---D----DR---E---GAVRAQ-----DDLFGYVAGLVEHKRAEPGPDIISRL-N---DGEL 226 (404)
T ss_dssp --HHHHH---HHHHTBS---S----CH---H---HHHHHH-----HHHHHHHHHHHHHHHHSCCSSHHHHH-H---SSSC
T ss_pred --HHHHH---HHHHHhc---c----Cc---H---HHHHHH-----HHHHHHHHHHHHHHHhCCCCCHHHHh-h---cCCC
Confidence 11111 1111110 0 01 1 111111 12223333333332 246999998 3 2379
Q ss_pred CHHHHHHHHHHHhhcccCC
Q 022341 280 NEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 280 t~~~i~~~~~~l~~aG~~~ 298 (298)
|++++...+.++++||+++
T Consensus 227 s~~ei~~~~~~l~~AG~dT 245 (404)
T 2xbk_A 227 TEDRVAHLAMGLLFAGLDS 245 (404)
T ss_dssp CHHHHHHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHhchHH
Confidence 9999999999999999863
No 66
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*
Probab=99.68 E-value=5.1e-16 Score=138.29 Aligned_cols=204 Identities=10% Similarity=0.094 Sum_probs=125.3
Q ss_pred HHHHHHHhCCeEEEeeC-Ce---eEEEeCCHHHHHHHHHhcCccccCCCC------cc---hhhhhccCCCceEEecCCh
Q 022341 58 LSDLAKKYGDVLLLRMG-QR---NLVVVSSPDHAKEVLHTQGVEFGSRTR------NV---VFDIFTGKGQDMVFTVYGE 124 (298)
Q Consensus 58 ~~~~~~~yG~i~~~~~g-~~---~~vvi~~p~~i~evl~~~~~~f~~r~~------~~---~~~~~~~~~~~~~~~~~g~ 124 (298)
+.+|+++ |||++++++ +. ++|++++|++++++|.++ ..|++|+. .. ...... .+.+ ++..+|+
T Consensus 19 ~~~l~~~-Gpv~~~~~~~g~~~~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~-l~~~~g~ 94 (398)
T 1lfk_A 19 ADELLAA-GALTRVTIGSGADAETHWMATAHAVVRQVMGDH-QQFSTRRRWDPRDEIGGKGIFRPRE-LVGN-LMDYDPP 94 (398)
T ss_dssp CHHHHTS-CSEEEEC------CCCEEEECSHHHHHHHHHCT-TTEEECTTCCC-------------C-CTTC-GGGCCTT
T ss_pred hHHHHhc-CCccccccCCCCcccceEEEecHHHHHHHHhhC-cccccccccccccccCCcccccccc-cccC-ccccCCH
Confidence 3457666 999999875 45 899999999999999543 35787765 11 111111 1223 4557899
Q ss_pred hHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHH-HHHHHHHH-HHHHHhccccCCCCchH
Q 022341 125 HWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRR-LQLMMYNN-MYRIMFDRRFESQDDPL 202 (298)
Q Consensus 125 ~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~-i~~~~fG~~~~~~~~~~ 202 (298)
.|+++||++. +.|+++.++.+.+.++++++++++.|.+. ++++|+.. +...++.. ++. +||.+.+. .
T Consensus 95 ~~~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-----~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~--~-- 163 (398)
T 1lfk_A 95 EHTRLRRKLT-PGFTLRKMQRMAPYIEQIVNDRLDEMERA-----GSPADLIAFVADKVPGAVLCE-LVGVPRDD--R-- 163 (398)
T ss_dssp HHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHHH-----CSSEEHHHHTTTTHHHHHHHH-HHTCCGGG--H--
T ss_pred HHHHHHHHHH-hhhCHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCccHHHHHHHHHHHHHHHH-HcCCCHHH--H--
Confidence 9999999875 77899999999999999999999999741 12355543 33324444 555 79987532 1
Q ss_pred HHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHhhcccCCC
Q 022341 203 FNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---NLKCAIDHILDAQTKGEI 279 (298)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~d~ld~ll~~~~~~~~ 279 (298)
..+... ...+. . ..+. .+...+.. +....+....++++ ..+|+++.|+++. ++.+
T Consensus 164 -~~~~~~---~~~~~---~-----~~~~----~~~~~~~~-----~~~~~~~~~~i~~r~~~~~~dll~~ll~~~-~~~l 221 (398)
T 1lfk_A 164 -DMFMKL---CHGHL---D-----ASLS----QKRRAALG-----DKFSRYLLAMIARERKEPGEGMIGAVVAEY-GDDA 221 (398)
T ss_dssp -HHHHHH---HHHTT---C-----TTSC----HHHHHHHH-----HHHHHHHHHHHHHHHHSCCSSHHHHHHHHH-GGGS
T ss_pred -HHHHHH---HHHHH---h-----cccc----hHHHHHHH-----HHHHHHHHHHHHHHHhCCCCCHHHHHHHhc-CCCC
Confidence 111111 11111 0 0111 11111111 12233333334332 2579999999865 4469
Q ss_pred CHHHHHHHHHHHhhcccCC
Q 022341 280 NEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 280 t~~~i~~~~~~l~~aG~~~ 298 (298)
|++++...+.++++||+++
T Consensus 222 ~~~el~~~~~~l~~AG~dT 240 (398)
T 1lfk_A 222 TDEELRGFCVQVMLAGDDN 240 (398)
T ss_dssp CHHHHHHHHHHHHHHTSHH
T ss_pred CHHHHHHHHHHHHHHhccH
Confidence 9999999999999999864
No 67
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Probab=99.67 E-value=1.4e-15 Score=136.06 Aligned_cols=208 Identities=12% Similarity=0.061 Sum_probs=137.0
Q ss_pred cchHHHHHHHHHhCCeEEEeeCC--eeEEEeCCHHHHHHHHHhcCccccCCCCcc----hhhhhccC-CCceEEecCChh
Q 022341 53 LNHRNLSDLAKKYGDVLLLRMGQ--RNLVVVSSPDHAKEVLHTQGVEFGSRTRNV----VFDIFTGK-GQDMVFTVYGEH 125 (298)
Q Consensus 53 ~~~~~~~~~~~~yG~i~~~~~g~--~~~vvi~~p~~i~evl~~~~~~f~~r~~~~----~~~~~~~~-~~~~~~~~~g~~ 125 (298)
.+|..+.++. +||||+++++++ .+.+++++|+++++||.+ ..|+.++... ....+.+. +.+ ++..+|+.
T Consensus 28 ~p~~~~~~l~-~~Gpv~~~~~~~g~~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~-l~~~dg~~ 103 (411)
T 2dkk_A 28 EFDPVLAELM-REGPLTRVRLPHGEGWAWLATRYDDVKAITND--PRFGRAEVTQRQITRLAPHFKPRPGS-LAFADQPD 103 (411)
T ss_dssp CCCHHHHHHH-TTCSEEEEECSBSBSCEEEECSHHHHHHHTTC--TTEESGGGGGSCBCBSSSCCCCCTTC-STTCCTTH
T ss_pred cccHHHHHHH-hcCCeEeeecCCCceeEEEEcCHHHHHHHHcC--CCcccCCCCCCCccccccchhccccc-cccCCchH
Confidence 3567888886 899999999865 789999999999999976 3677665321 11122211 223 45678999
Q ss_pred HHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHH-HHHHHHHHHHhccccCCCCchHH
Q 022341 126 WRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQL-MMYNNMYRIMFDRRFESQDDPLF 203 (298)
Q Consensus 126 Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~-~~~~~i~~~~fG~~~~~~~~~~~ 203 (298)
|+++||++ .+.|+++.++.+.+.++++++++++.|.+. +..+|+. .+.. .++++|++ +||.+.+. .
T Consensus 104 h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-----g~~~dl~~~~~~~~~~~vi~~-l~G~~~~~--~--- 171 (411)
T 2dkk_A 104 HNRLRRAV-AGAFTVGATKRLRPRAQEILDGLVDGILAE-----GPPADLVERVLEPFPIAVVSE-VMGVPAAD--R--- 171 (411)
T ss_dssp HHHHHHHH-GGGSSHHHHHHHHHHHHHHHHHHHHHHHHH-----CSCEEHHHHTTTHHHHHHHHH-HHTCCSSH--H---
T ss_pred HHHHHHHh-hHhhCHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCeehHHHHHHHHHHHHHHH-HhCCCHHH--H---
Confidence 99999987 478999999999999999999999999752 1235544 4443 44555777 59986531 1
Q ss_pred HHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcc---cCChHHHHHhhcccC-CC
Q 022341 204 NRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERN---LKCAIDHILDAQTKG-EI 279 (298)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~d~ld~ll~~~~~~-~~ 279 (298)
..+.. ....+. ...+ + .+...+. .+.+..+....+++++ .+|+++.|+++ +++ .+
T Consensus 172 ~~~~~---~~~~~~--------~~~~---~-~~~~~~~-----~~~l~~~~~~~i~~r~~~~~~dll~~ll~~-~~~~~l 230 (411)
T 2dkk_A 172 ERVHS---WTRQII--------STSG---G-AEAAERA-----KRGLYGWITETVRARAGSEGGDVYSMLGAA-VGRGEV 230 (411)
T ss_dssp HHHHH---HHGGGC--------SSCS---C-SHHHHHH-----HHHHHHHHHHHHHTTTTCCSSCHHHHHHHH-HHTTSS
T ss_pred HHHHH---HHHHHH--------hccc---h-HHHHHHH-----HHHHHHHHHHHHHHHHhCCCCCHHHHHHHh-cCCCCC
Confidence 11111 111111 1111 1 1111111 1233445555565543 46999999987 444 69
Q ss_pred CHHHHHHHHHHHhhcccCC
Q 022341 280 NEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 280 t~~~i~~~~~~l~~aG~~~ 298 (298)
|++++...+.++++|| ++
T Consensus 231 s~~el~~~~~~l~~AG-eT 248 (411)
T 2dkk_A 231 GETEAVGLAGPLQIGG-EA 248 (411)
T ss_dssp CTTSHHHHHHHHHHTH-HH
T ss_pred CHHHHHHHHHHHHHhh-HH
Confidence 9999999999999999 64
No 68
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}
Probab=99.66 E-value=4e-15 Score=133.68 Aligned_cols=216 Identities=11% Similarity=0.031 Sum_probs=136.1
Q ss_pred chHHHHHHHHHhCCeEEEee-CCeeEEEeCCHHHHHHHHHhcCccccCCCC---cchhh-----hhccCCCceEEecCCh
Q 022341 54 NHRNLSDLAKKYGDVLLLRM-GQRNLVVVSSPDHAKEVLHTQGVEFGSRTR---NVVFD-----IFTGKGQDMVFTVYGE 124 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~-g~~~~vvi~~p~~i~evl~~~~~~f~~r~~---~~~~~-----~~~~~~~~~~~~~~g~ 124 (298)
++..+.++.++ |||++++. ++.++++|+++++|++|+.+. ..|++++. ..... ...+.+...++..+|+
T Consensus 40 p~~~~~~lr~~-gpv~~~~~~~~~~~~vvt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~ 117 (426)
T 3rwl_A 40 VGEYFKRLRKD-DPVHYCADSAFGPYWSITKYNDIMHVDTNH-DIFSSDAGYGGIIIDDGIQKGGDGGLDLPNFIAMDRP 117 (426)
T ss_dssp HHHHHHHHHHH-CSEEEESCCTTCSEEEECSHHHHHHHHHCT-TTEECCGGGTCSSSSCCC-------CCCCCGGGCCTT
T ss_pred ccHHHHHHHhc-CCeeeccCCCCCCEEEEcCHHHHHHHHcCC-cccccccccCCCCcccccccccccccccCcccccCch
Confidence 66778888765 99999987 567899999999999999765 45776652 11111 0011112235678899
Q ss_pred hHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhh-HHHHHHHHHHHHHHHHhccccCCCCchHH
Q 022341 125 HWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVL-RRRLQLMMYNNMYRIMFDRRFESQDDPLF 203 (298)
Q Consensus 125 ~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~fG~~~~~~~~~~~ 203 (298)
.|+++||++ .+.|+++.++.+.+.+.++++.+++.|... +.+| ...+...++..++..+||...+. ..
T Consensus 118 ~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~------~~~dl~~~~~~~~~~~vi~~l~G~~~~~--~~-- 186 (426)
T 3rwl_A 118 RHDEQRKAV-SPIVAPANLAALEGTIRERVSKTLDGLPVG------EEFDWVDRVSIEITTQMLATLFDFPFEE--RR-- 186 (426)
T ss_dssp HHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHTSCSS------SCEEHHHHTHHHHHHHHHHHHHTCCGGG--TH--
T ss_pred HHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHhhcC------CCcchHHHHHHHHHHHHHHHHcCCCHHH--HH--
Confidence 999999987 588999999999999999999999988431 2344 44554455555444589975432 11
Q ss_pred HHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc----ccCChHHHHHhhcccCCC
Q 022341 204 NRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER----NLKCAIDHILDAQTKGEI 279 (298)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----~~~d~ld~ll~~~~~~~~ 279 (298)
.+....+. +.. . . . +..........+. .+.+..+....++++ ..+|+++.|++...++.+
T Consensus 187 -~~~~~~~~---~~~-~--~--~--~~~~~~~~~~~~~-----~~~~~~~~~~~i~~r~~~~~~~dll~~ll~~~~~~~l 250 (426)
T 3rwl_A 187 -KLTRWSDV---TTA-A--P--G--GGVVESWDQRKTE-----LLECAAYFQVLWNERVNKDPGNDLISMLAHSPATRNM 250 (426)
T ss_dssp -HHHHHHHH---HTC-C--T--T--SSSCSSHHHHHHH-----HHHHHHHHHHHHHHHHTSCCCSSHHHHHHHCGGGGGC
T ss_pred -HHHHHHHH---HHh-c--c--C--ccccccHHHHHHH-----HHHHHHHHHHHHHHHhhcCCCCCHHHHHHhcccCCCC
Confidence 12211111 111 0 0 0 1111111111111 122334444444433 257999999987666679
Q ss_pred CHHHHHHHHHHHhhcccCC
Q 022341 280 NEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 280 t~~~i~~~~~~l~~aG~~~ 298 (298)
|++++...+.++++||+++
T Consensus 251 s~~el~~~~~~l~~AG~eT 269 (426)
T 3rwl_A 251 TPEEYLGNVLLLIVGGNDT 269 (426)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999863
No 69
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Probab=99.65 E-value=1.3e-15 Score=134.19 Aligned_cols=198 Identities=11% Similarity=0.034 Sum_probs=126.4
Q ss_pred hHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCC-cc-hh-----h-hhccC--CCceEEecCCh
Q 022341 55 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTR-NV-VF-----D-IFTGK--GQDMVFTVYGE 124 (298)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~-~~-~~-----~-~~~~~--~~~~~~~~~g~ 124 (298)
+..+.++ ++||||++++ | .+++++|+++++||.++ ..|++++. .. .. . .+.+. +.+ ++..+|+
T Consensus 2 ~~~~~~l-r~~gpv~~~~-g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~dg~ 74 (367)
T 3b4x_A 2 YDWFKQM-RKESPVYYDG-K---VWNLFKYEDCKMVLNDH-KRFSSNLTGYNDKLEMLRSGKVFFDIPTRYT-MLTSDPP 74 (367)
T ss_dssp HHHHHHH-HHHCSEEECS-S---SEEECSHHHHHHHHHCT-TTEECCCSSTTTTHHHHHHTCCCCCCGGGSS-GGGCCTT
T ss_pred CHHHHHH-HHcCCceeeC-C---EEEEecHHHHHHHHcCc-hhhccCcccccccccccccccchhhcccccc-cccCCch
Confidence 4566777 5799999988 5 89999999999999865 47888753 21 22 2 23231 123 4566899
Q ss_pred hHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HH-HHHHHHHHHHHHhccccCCCCchH
Q 022341 125 HWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RL-QLMMYNNMYRIMFDRRFESQDDPL 202 (298)
Q Consensus 125 ~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~-~~~~~~~i~~~~fG~~~~~~~~~~ 202 (298)
.|+++||++. +.|+++.++. +.++++++++++.|. . .+|+. .+ ...++++|++ +||.+ + +...
T Consensus 75 ~h~~~R~~~~-~~fs~~~l~~--~~i~~~~~~l~~~l~-g-------~~d~~~~~~~~~~~~vi~~-~~G~~-~--~~~~ 139 (367)
T 3b4x_A 75 LHDELRNLTA-DAFNPSNLPV--DFVREVTVKLLSELD-E-------EFDVIESFAIPLPILVISK-MLGIN-P--DVKK 139 (367)
T ss_dssp HHHHHHHTTG-GGGSGGGSCH--HHHHHHHHHHHHTCC-S-------EEEHHHHTTTHHHHHHHHH-HHTCC-C--CHHH
T ss_pred hHHHHHHHHH-HhcCHhhhcc--hHHHHHHHHHHHhcc-C-------CcchHHHHHHhhHHHHHHH-HcCCC-C--cHHH
Confidence 9999999875 7888888776 788899999999886 1 14543 44 3445566888 79987 3 2221
Q ss_pred HHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcc---cCChHHHHHhhcccCCC
Q 022341 203 FNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERN---LKCAIDHILDAQTKGEI 279 (298)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~d~ld~ll~~~~~~~~ 279 (298)
+....+ .+...+ +..|... +.. +.. +....+....+++++ .+|+++.|++. .+
T Consensus 140 ---~~~~~~---~~~~~~-----~~~p~~~---~~~-~~~-----~~~~~~~~~~i~~r~~~~~~dll~~ll~~----~l 195 (367)
T 3b4x_A 140 ---VKDWSD---LVALRL-----GRADEIF---SIG-RKY-----LELISFSKKELDSRKGKEIVDLTGKIANS----NL 195 (367)
T ss_dssp ---HHHHHH---HHHTTT-----TSTTGGG---CCC-HHH-----HHHHHHHHHHHHHHTTTCCSSHHHHHHTS----SS
T ss_pred ---HHHHHH---HHHhcc-----CCChhhH---HHH-HHH-----HHHHHHHHHHHHHHhcCCCCCHHHHHHhc----cC
Confidence 222211 121111 1123211 111 111 122333444444332 46999999976 58
Q ss_pred CHHHHHHHHHHHhhcccCC
Q 022341 280 NEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 280 t~~~i~~~~~~l~~aG~~~ 298 (298)
|++++...+.++++||+++
T Consensus 196 s~~el~~~~~~l~~AG~eT 214 (367)
T 3b4x_A 196 SELEKEGYFILLMIAGNET 214 (367)
T ss_dssp CHHHHHHHHHHHHHTTTHH
T ss_pred CHHHHHHHHHHHHHhhhHH
Confidence 9999999999999999864
No 70
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Probab=99.62 E-value=1.2e-15 Score=135.88 Aligned_cols=206 Identities=12% Similarity=0.054 Sum_probs=131.8
Q ss_pred chHHHHHHHHHhCCeEEEee-CCeeEEEeCCHHHHHHHHHhcCcccc-C-CCCc--chhh--hhcc-CCCceEEecCChh
Q 022341 54 NHRNLSDLAKKYGDVLLLRM-GQRNLVVVSSPDHAKEVLHTQGVEFG-S-RTRN--VVFD--IFTG-KGQDMVFTVYGEH 125 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~-g~~~~vvi~~p~~i~evl~~~~~~f~-~-r~~~--~~~~--~~~~-~~~~~~~~~~g~~ 125 (298)
++..+.+| ++||||+++++ |+.+.|++++|++++++|.++ .|+ + ++.. .... .+.+ .+.++ +.. .
T Consensus 18 p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~---~ 90 (396)
T 1n40_A 18 IPDAVAEL-RTREPIRKVRTITGAEAWLVSSYALCTQVLEDR--RFSMKETAAAGAPRLNALTVPPEVVNNM-GNI---A 90 (396)
T ss_dssp CCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEESGGGGSTTCCCSSCCSSCGGGGGHH-HHH---H
T ss_pred ccHHHHHH-HHhCCeeEeecCCCceEEEEecHHHHHHHHhCC--CcccccCccccccccccccCCchhhhhh-hhH---H
Confidence 78889999 99999999998 899999999999999999865 466 5 5432 1111 1111 12233 333 9
Q ss_pred HHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HHHH-HHHHHHHHHHhccccCCCCchHH
Q 022341 126 WRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RLQL-MMYNNMYRIMFDRRFESQDDPLF 203 (298)
Q Consensus 126 Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~-~~~~~i~~~~fG~~~~~~~~~~~ 203 (298)
|+++||++. +.|+++ ++.+.+.+.++++++++.|.+. ++++|+. .+.. .++++|+. +||.+.+. ..
T Consensus 91 h~~~R~~~~-~~fs~~-~~~~~~~i~~~~~~l~~~l~~~-----~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~--~~-- 158 (396)
T 1n40_A 91 DAGLRKAVM-KAITPK-APGLEQFLRDTANSLLDNLITE-----GAPADLRNDFADPLATALHCK-VLGIPQED--GP-- 158 (396)
T ss_dssp HTTCHHHHH-HHTSSC-STTHHHHHHHHHHHHHHHHHHH-----CSCEETTTTTHHHHHHHHHHH-HHTCCGGG--HH--
T ss_pred HHHHHHHHH-HhhChH-HHHhHHHHHHHHHHHHHHHHhc-----CCCccHHHHHHHHhHHHHHHH-HhCCChhh--HH--
Confidence 999999875 778888 9999999999999999999751 1234432 3443 44555887 89987532 11
Q ss_pred HHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHH-hcccCChHHHHHhhc-c--cCCC
Q 022341 204 NRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVE-ERNLKCAIDHILDAQ-T--KGEI 279 (298)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~d~ld~ll~~~-~--~~~~ 279 (298)
.+... ...+.... ...|. +...+.. +.. .+....++ ....+|+++.|++.. + .+.+
T Consensus 159 -~~~~~---~~~~~~~~-----~~~p~-----~~~~~~~-----~~~-~~~~~~i~~~~~~~dll~~ll~~~~~~~~~~l 218 (396)
T 1n40_A 159 -KLFRS---LSIAFMSS-----ADPIP-----AAKINWD-----RDI-EYMAGILENPNITTGLMGELSRLRKDPAYSHV 218 (396)
T ss_dssp -HHHHT---HHHHTBCC-----SSCCH-----HHHHHHH-----HHH-HHHHHHHHCTTCCSHHHHHHHHHHTSGGGTTS
T ss_pred -HHHHH---HHHHhccc-----cCCCH-----HHHHHHH-----HHH-HHHHHHHhCCCCCCCHHHHHHHhhcccccCCC
Confidence 11111 11121111 01121 1111111 223 44444444 122479999999764 2 2369
Q ss_pred CHHHHHHHHHHHhhcccCC
Q 022341 280 NEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 280 t~~~i~~~~~~l~~aG~~~ 298 (298)
|++++...+.++++||+++
T Consensus 219 ~~~~i~~~~~~~~~AG~dT 237 (396)
T 1n40_A 219 SDELFATIGVTFFGAGVIS 237 (396)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999863
No 71
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*
Probab=99.62 E-value=1.2e-14 Score=128.01 Aligned_cols=200 Identities=14% Similarity=0.087 Sum_probs=128.7
Q ss_pred hHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCC--cchhh-----hh-cc--CCCceEEecCCh
Q 022341 55 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTR--NVVFD-----IF-TG--KGQDMVFTVYGE 124 (298)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~--~~~~~-----~~-~~--~~~~~~~~~~g~ 124 (298)
+..+.++ ++||||+++ | +.+++++|++++++|.+. ..|++|+. ...+. .. .+ .|.+ ++..+|+
T Consensus 2 ~~~~~~l-r~~Gpv~~~--g--~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~g~ 74 (368)
T 1io7_A 2 YDWFSEM-RKKDPVYYD--G--NIWQVFSYRYTKEVLNNF-SKFSSDLTGYHERLEDLRNGKIRFDIPTRYT-MLTSDPP 74 (368)
T ss_dssp HHHHHHH-HHHCSEEEC--S--SCEEECSHHHHHHHHHCT-TTEECCCSSHHHHHHHHTTTCCCCSCGGGSS-GGGCCTT
T ss_pred CHHHHHH-HhcCCeEeE--C--CEEEEecHHHHHHHHcCc-ccccccccccccccccccccccccccccccc-cccCCCh
Confidence 4556777 589999987 5 589999999999999874 47888874 10111 10 11 1122 4567899
Q ss_pred hHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHH-HH-HHHHHHHHHHHHhccccCCCCchH
Q 022341 125 HWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR-RL-QLMMYNNMYRIMFDRRFESQDDPL 202 (298)
Q Consensus 125 ~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~-~~~~~~~i~~~~fG~~~~~~~~~~ 202 (298)
.|+++||++ .+.|+++.++.+.+.++++++++++.| +. +.+|+. .+ ...++++|+++ ||.+.+. .+
T Consensus 75 ~h~~~R~~~-~~~f~~~~~~~~~~~i~~~~~~l~~~l-~~------g~~d~~~~~~~~~~~~vi~~~-~G~~~~~--~~- 142 (368)
T 1io7_A 75 LHDELRSMS-ADIFSPQKLQTLETFIRETTRSLLDSI-DP------REDDIVKKLAVPLPIIVISKI-LGLPIED--KE- 142 (368)
T ss_dssp HHHHHHGGG-TTTTCHHHHHHHHHHHHHHHHHHHHTC-CT------TSEEHHHHTTTHHHHHHHHHH-HTCCGGG--HH-
T ss_pred HHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHh-hc------CCccHHHHHHHHHHHHHHHHH-hCCCHHH--HH-
Confidence 999999987 488999999999999999999999998 42 135544 34 34556668888 9986532 11
Q ss_pred HHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHhhcccCCCCHH
Q 022341 203 FNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERNLKCAIDHILDAQTKGEINED 282 (298)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~ld~ll~~~~~~~~t~~ 282 (298)
.+.. ....+ +.. .. -|.. .+. ..+. .+....+..+.+ ...+|+++.|++. .+|++
T Consensus 143 --~~~~---~~~~~---~~~-~~--~p~~---~~~----~~~~-~~~~~~~~~~~i--~~~~d~l~~ll~~----~l~~~ 197 (368)
T 1io7_A 143 --KFKE---WSDLV---AFR-LG--KPGE---IFE----LGKK-YLELIGYVKDHL--NSGTEVVSRVVNS----NLSDI 197 (368)
T ss_dssp --HHHH---HGGGC---TTS-CC--CTTC---HHH----HHHH-HHHHHHHHHHHT--TSSCHHHHHHHTS----SCCHH
T ss_pred --HHHH---HHHHH---Hhc-cC--ChHH---HHH----HHHH-HHHHHHHHHHHh--CCCCCHHHHHHhc----cCCHH
Confidence 1111 11111 110 00 1320 111 1111 122334444444 2356999999975 58999
Q ss_pred HHHHHHHHHhhcccCC
Q 022341 283 NVLYIVENINVAGMFI 298 (298)
Q Consensus 283 ~i~~~~~~l~~aG~~~ 298 (298)
++...+.++++||+++
T Consensus 198 ei~~~~~~l~~AG~dT 213 (368)
T 1io7_A 198 EKLGYIILLLIAGNET 213 (368)
T ss_dssp HHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHhhhHH
Confidence 9999999999999863
No 72
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Probab=99.60 E-value=1.8e-15 Score=135.55 Aligned_cols=211 Identities=11% Similarity=0.091 Sum_probs=131.8
Q ss_pred chHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcc-------hhhhhccCCCceEEecCChhH
Q 022341 54 NHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV-------VFDIFTGKGQDMVFTVYGEHW 126 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~-------~~~~~~~~~~~~~~~~~g~~W 126 (298)
++.. ++.++|||++.+++|+.. ++|+++++|++||.++...++.++... ......++ .++..+|+.|
T Consensus 35 P~~~--~~lr~~gpv~~~~~g~~~-~vv~~~~~v~~vL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~dg~~h 108 (416)
T 3p3o_A 35 SWDS--PEVAEAREKSWIARTPLA-LLVLRYAEADQLARDKRLISGFRGLVDMVGTPEGPVRDFMVD---FLQSLDGADH 108 (416)
T ss_dssp CTTS--HHHHHHHHHCSEEECSSS-EEECSHHHHHHHHHCTTEECSHHHHHHHHTCCSSHHHHHHHH---SGGGCCHHHH
T ss_pred CchH--HHHHHhCCccccccCCCc-eEEeCHHHHHHHHcCcccccCCccccccccccccchhhhhcC---ccccCCchHH
Confidence 4544 666789999999998777 999999999999977643222211100 00111122 3677889999
Q ss_pred HHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhh-HHHHHH-HHHHHHHHHHhccccCCCCchHHH
Q 022341 127 RKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVL-RRRLQL-MMYNNMYRIMFDRRFESQDDPLFN 204 (298)
Q Consensus 127 k~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~-~~~~~i~~~~fG~~~~~~~~~~~~ 204 (298)
+++||++ .+.|+++.++.+.+.++++++.+++.| .. + .+| +.++.. ....+|+. +||...+. .+
T Consensus 109 ~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l-~~-----g-~~d~~~~~~~~~~~~vi~~-l~G~~~~~-----~~ 174 (416)
T 3p3o_A 109 RRLRGLA-THPFTPRRITAVQPFVRSTVEQLIDKL-PQ-----G-DFDFVQHFPHPLPALVMCQ-LLGFPLED-----YD 174 (416)
T ss_dssp HHHHHTT-CGGGSHHHHHHHHHHHHHHHHHHHHTC-CS-----S-SEEHHHHTTTHHHHHHHHH-HHTCCGGG-----HH
T ss_pred HHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHhh-cc-----C-CccHHHHHHHHHHHHHHHH-HhCCCHHH-----HH
Confidence 9999987 589999999999999999999999998 32 1 244 455544 34455777 68975421 11
Q ss_pred HHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHhhcccCCCCH
Q 022341 205 RLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---NLKCAIDHILDAQTKGEINE 281 (298)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~d~ld~ll~~~~~~~~t~ 281 (298)
.+... ...+... +.... .....+...+. .+.+..+....++++ ..+|+++.|++...++.+|+
T Consensus 175 ~~~~~---~~~~~~~--------~~~~~--~~~~~~~~~~~-~~~l~~~~~~~i~~rr~~~~~dll~~ll~~~~~~~ls~ 240 (416)
T 3p3o_A 175 TVGRL---SIETNLG--------LALSN--DQDILVKVEQG-LGRMFDYLVAAIEKRKVEPGDDLTSDIVRAFHDGVLDD 240 (416)
T ss_dssp HHHHH---HHTTCGG--------GTTCS--CHHHHHHHHHH-HHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHTTSSCH
T ss_pred HHHHH---HHHHHhh--------ccccc--chhhHHHHHHH-HHHHHHHHHHHHHHHHhCCCccHHHHHHHhhccCCCCH
Confidence 11111 1111111 11100 00001111111 123334444444433 35799999998765568999
Q ss_pred HHHHHHHHHHhhcccCC
Q 022341 282 DNVLYIVENINVAGMFI 298 (298)
Q Consensus 282 ~~i~~~~~~l~~aG~~~ 298 (298)
+++...+.++++||+++
T Consensus 241 ~el~~~~~~l~~AG~eT 257 (416)
T 3p3o_A 241 YELRTLVATVLVAGYET 257 (416)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccH
Confidence 99999999999999863
No 73
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*
Probab=99.58 E-value=7.4e-15 Score=128.18 Aligned_cols=188 Identities=14% Similarity=0.104 Sum_probs=120.9
Q ss_pred HHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhhhhccCCCceEEecCChhHHHHhhhhcccccchHH
Q 022341 63 KKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKV 142 (298)
Q Consensus 63 ~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~ 142 (298)
++||||+++ | ++++++|+++++||.++ ..|++|+....... .+.+ ++..+|+.|+++||++ .+.|+++.
T Consensus 2 r~~gpv~~~--g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~---~~~~-l~~~~g~~~~~~R~~~-~~~fs~~~ 70 (343)
T 2rfb_A 2 RLNDPVHYD--G---AWHVYKYSDVKHVLMND-KIFSSNPGNRYSNA---GGIS-FITMDNPEHKEFRDIS-APYFLPSK 70 (343)
T ss_dssp -CCCCEEET--T---EEEECSHHHHHHHHHCT-TTEESSCSSCCC------CCG-GGGCCHHHHHHHHHHH-HHHHSHHH
T ss_pred CCcCCeeee--C---eEEEcCHHHHHHHHhCh-hhcccCCcCCCCCc---cccc-cccCCchHHHHHHHHh-hhhcCHHH
Confidence 579999986 4 89999999999999876 47888873211122 1333 4557899999999987 58899999
Q ss_pred HHhhHHHHHHHHHHHHHHHhcCcccccCChhhH-HHH-HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHHHhhhhcc
Q 022341 143 VQQQRFNWEDEAARVVEDVKKDPEAATNGIVLR-RRL-QLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSF 220 (298)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~-~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (298)
++.+.+.++++++++++.|. .+|+ ..+ ...++++|+++ ||.+.+. .+ .+.... ..+...+
T Consensus 71 l~~~~~~i~~~~~~l~~~l~---------~~d~~~~~~~~~~~~vi~~~-~G~~~~~--~~---~~~~~~---~~~~~~~ 132 (343)
T 2rfb_A 71 INDYKDFIEETSNDLIKNID---------NKDIISEYAVRLPVNIISKI-LGIPDSD--MP---LFKLWS---DYIIGNK 132 (343)
T ss_dssp HGGGHHHHHHHHHHHHTTCT---------TSCHHHHTTTHHHHHHHHHH-HTCCGGG--HH---HHHHHH---HHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHhcc---------ccCHHHHHhhhhhHHHHHHH-cCCCHHH--HH---HHHHHH---HHHhhcc
Confidence 99999999999999998876 1333 334 34556668888 9986532 11 122211 1121111
Q ss_pred CCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHhhcccC-CCCHHHHHHHHHHHhhcccCC
Q 022341 221 EYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERNLKCAIDHILDAQTKG-EINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 221 ~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~ld~ll~~~~~~-~~t~~~i~~~~~~l~~aG~~~ 298 (298)
.|.+. .+.+. +. .+....+....+ .+| ++.|++...++ .+|++++...+.++++||+++
T Consensus 133 -------~p~~~----~~~~~--~~-~~~~~~~~~~~i----~~d-l~~ll~~~~~~~~l~~~ei~~~~~~~~~AG~dT 192 (343)
T 2rfb_A 133 -------RDENF----NYVNN--RM-VSRLLEIFKSDS----HGI-INVLAGSSLKNRKLTMDEKIKYIMLLIIGGNET 192 (343)
T ss_dssp -------CSSHH----HHHHH--HH-HHHHHHHHHSCC----SSH-HHHHHTCBCSSSBCCHHHHHHHHHHHHHHHHHH
T ss_pred -------Ccchh----hHHHH--HH-HHHHHHHHHHHH----hcc-HHHHHhhhcCCCCCCHHHHHHHHHHHHHHhhHH
Confidence 13221 11111 11 122223333222 468 99999865444 599999999999999999863
No 74
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=99.58 E-value=3.7e-14 Score=126.11 Aligned_cols=212 Identities=14% Similarity=0.081 Sum_probs=131.6
Q ss_pred chHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhhhhccCCCceEEecCChhHHHHhhhh
Q 022341 54 NHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIM 133 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~~ 133 (298)
++..+.++.+ +|||+++..| .+++++++++++++.+. .|+.++...........+ +.+++.+|+.|+++||++
T Consensus 22 p~~~~~~lr~-~~pv~~~~~g---~~~v~~~~~v~~~l~d~--~fs~~~~~~~~~~~~~~~-~~l~~~dg~~h~~~R~~~ 94 (394)
T 2wiy_A 22 PYPWYRRLQQ-DHPVHKLEDG---TYLVSRYADVSHFAKLP--IMSVEPGWADAGPWAVAS-DTALGSDPPHHTVLRRQT 94 (394)
T ss_dssp CHHHHHHHHH-HCSEEECTTS---CEEECCHHHHHHHTTST--TEECHHHHHTCGGGGGGG-GSGGGCCTTHHHHHHHHH
T ss_pred ccHHHHHHHh-cCCeEEecCC---eEEEcCHHHHHHHHcCC--Cccccccccccccchhcc-cccccCCchHHHHHHHHH
Confidence 6667777754 5899987655 68999999999999643 566554211111111111 225678899999999987
Q ss_pred cccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhH-HHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Q 022341 134 TVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLR-RRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGE 212 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~ 212 (298)
.+.|+++.++.+.+.+++.++++++.+... +.+|+ ..+...+.++++..+||...+ +. ..+.....
T Consensus 95 -~~~fs~~~~~~~~~~i~~~~~~l~~~~~~~------~~~d~~~~~~~~~~~vi~~~~~G~~~~---~~--~~~~~~~~- 161 (394)
T 2wiy_A 95 -NKWFTPKLVDGWVRTTRELVGDLLDGVEAG------QVIEARRDLAVVPTHVTMARVLQLPED---DA--DAVMEAMF- 161 (394)
T ss_dssp -HTTCSHHHHHHHTHHHHHHHHHHHHTCCTT------CCEEHHHHHTHHHHHHHHHHHHTCCCC---CH--HHHHHHHH-
T ss_pred -HhccCHHHHHHHHHHHHHHHHHHHHHHhcc------CCeeHHHHHHhhhHHHHHHHHcCCCHh---HH--HHHHHHHH-
Confidence 589999999999999999999999987531 23454 344444555689999998542 21 11111110
Q ss_pred HHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHhhcccCCCCHHHHHHHHH
Q 022341 213 RSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER---NLKCAIDHILDAQTKGEINEDNVLYIVE 289 (298)
Q Consensus 213 ~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~d~ld~ll~~~~~~~~t~~~i~~~~~ 289 (298)
..+... ...|.... ... ..+. .+.+..+....++++ ..+|+++.|++..+++.+|++++...+.
T Consensus 162 -~~~~~~------~~~p~~~~-~~~----~~~~-~~~l~~~~~~~i~~rr~~~~~dll~~Ll~~~~~~~ls~~el~~~~~ 228 (394)
T 2wiy_A 162 -EAMLMQ------SAEPADGD-VDR----AAVA-FGYLSARVAEMLEDKRVNPGDGLADSLLDAARAGEITESEAIATIL 228 (394)
T ss_dssp -HHHGGG------SSSCCTTH-HHH----HHHH-HHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred -HHHHhc------cCCccchH-HHH----HHHH-HHHHHHHHHHHHHHhhcCCCCcHHHHHHHhhhcCCCCHHHHHHHHH
Confidence 011110 11232111 111 1111 122333344444333 2468999999876566799999999999
Q ss_pred HHhhcccCC
Q 022341 290 NINVAGMFI 298 (298)
Q Consensus 290 ~l~~aG~~~ 298 (298)
++++||+++
T Consensus 229 ~l~~AG~eT 237 (394)
T 2wiy_A 229 VFYAVGHMA 237 (394)
T ss_dssp HHHHHTTTH
T ss_pred HHHHhhhhh
Confidence 999999874
No 75
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*
Probab=99.44 E-value=5.2e-13 Score=119.35 Aligned_cols=230 Identities=14% Similarity=0.117 Sum_probs=126.8
Q ss_pred CCCccccc-cc--cCCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcc---hhhhhc
Q 022341 38 LPVPVFGN-WL--QVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV---VFDIFT 111 (298)
Q Consensus 38 ~~~PiiGn-l~--~l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~---~~~~~~ 111 (298)
.++|.+|- .+ .+..+ ++..+.++. ++|||+ |.+...+++|+++++|++||.+. ..|+++.... ......
T Consensus 18 ~~~P~~~~dp~~~~~~~d-P~~~~~~lR-~~gPV~--~~~~~~~~~vt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~ 92 (412)
T 4dnj_A 18 AGVPHLGIDPFALDYFAD-PYPEQETLR-EAGPVV--YLDKWNVYGVARYAEVYAVLNDP-LTFCSSRGVGLSDFKKEKP 92 (412)
T ss_dssp TTSCEECCCTTSHHHHHS-CHHHHHHHH-HHCSSE--EETTTTEEEECSHHHHHHHHTCT-TTEESTTCSSSSCTTTSCC
T ss_pred CCCCccCCCCCCHHHHhC-cHHHHHHHH-hcCCEE--EECCCCEEEECCHHHHHHHHcCC-ccccCCCcccccccccccc
Confidence 46787762 11 12222 566677764 579997 46777889999999999999644 3455433211 111111
Q ss_pred cCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhHHHHHHHHHHHHHHHHh
Q 022341 112 GKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMF 191 (298)
Q Consensus 112 ~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f 191 (298)
....+.++..+|+.|+++||++ ++.|+++.++.+.+.+.+.++.+++.+....+. .+.+.++...+...+...++
T Consensus 93 ~~~~~~~~~~Dg~~H~r~R~~~-~~~Fs~~~l~~~~~~i~~~~~~l~~~~~~~~~~----~D~v~~~~~~~~~~~i~~l~ 167 (412)
T 4dnj_A 93 WRPPSLILEADPPAHTRTRAVL-SKVLSPATMKRLRDGFAAAADAKIDELLARGGN----IDAIADLAEAYPLSVFPDAM 167 (412)
T ss_dssp SSCCCTTTTCCTTHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTSE----EETCCCCCCHHHHHHHHHHH
T ss_pred ccCCCccccCChHHHHHHHhhc-ccccCHHHHHHhhHHHHHHHHHHHHhhhccCCC----ceeHHHHHhhhhHhHHHHHc
Confidence 1122335667899999999987 589999999999999999999999998653211 11122222233334333456
Q ss_pred ccccCCCCchHHHHHHHHHHHHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHh-cccCChHHHH
Q 022341 192 DRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEE-RNLKCAIDHI 270 (298)
Q Consensus 192 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~d~ld~l 270 (298)
|...... +.... ... .+.... ....... . ..... ......+....+++ +...|.+..+
T Consensus 168 g~~~~~~-~~~~~----~~~---~~~~~~-----~~~~~~~----~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l 226 (412)
T 4dnj_A 168 GLKQEGR-ENLLP----YAG---LVFNAF-----GPPNELR----Q---SAIER-SAPHQAYVAEQCQRPNLAPGGFGAC 226 (412)
T ss_dssp TCCSTTG-GGHHH----HHH---HHHHHT-----SCSSHHH----H---HHHHT-CHHHHHHHHHHTSGGGSCTTSHHHH
T ss_pred CCchhhh-hhhhh----hhh---cccccc-----cccHHHH----H---HHHHH-HHHHHHHHHHHHHhhccccccchhh
Confidence 6543221 11111 111 111111 0011100 0 00000 00111111222222 2345566666
Q ss_pred Hhhc-ccCCCCHHHHHHHHHHHhhcccCC
Q 022341 271 LDAQ-TKGEINEDNVLYIVENINVAGMFI 298 (298)
Q Consensus 271 l~~~-~~~~~t~~~i~~~~~~l~~aG~~~ 298 (298)
+... +.+.++++++..++.++++||+++
T Consensus 227 ~~~~~~~~~l~~~e~~~~~~~l~~AG~eT 255 (412)
T 4dnj_A 227 IHAFSDTGEITPEEAPLLVRSLLSAGLDT 255 (412)
T ss_dssp HHHTTTTTSSCTTHHHHHHHHHHHHSSHH
T ss_pred hHhhhhccchhHHHHHHHHHHHHhccchh
Confidence 6544 344799999999999999999874
No 76
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=99.24 E-value=2.1e-10 Score=102.59 Aligned_cols=215 Identities=11% Similarity=0.101 Sum_probs=125.4
Q ss_pred chHHHHHHHHHhC-CeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcchhhhhccCCCceEEecCChhHHHHhhh
Q 022341 54 NHRNLSDLAKKYG-DVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRI 132 (298)
Q Consensus 54 ~~~~~~~~~~~yG-~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rk~ 132 (298)
++..+.++.++.+ +++..-.++ ...+|+.+++|++||.+ ...||++........ ......+++..+|+.|+++||+
T Consensus 39 ~~~~~~~lr~~~~~~~~~~~~~g-g~W~vtr~~dv~~vl~d-~~~fs~~~~~~~~~~-~~~~~~~~~~~D~p~H~r~Rrl 115 (417)
T 4dxy_A 39 YHEAWKKVQHPGIPDLIWTPFTG-GHWIATNGDTVKEVYSD-PTRFSSEVIFLPKEA-GEKAQMVPTKMDPPEHTPYRKA 115 (417)
T ss_dssp HHHHHHHHSCTTCCSEEEESSTT-SEEEECSHHHHHHHHTC-TTTEESSCCSSSTTS-SCSSCTTTTTCCTTTHHHHHHH
T ss_pred hHHHHHHHHhhCCCCEEecCCCC-CEEEECCHHHHHHHHcC-chhccCCCccccccc-ccccccCcccCCcHHHHHHHHH
Confidence 4555666655433 455433333 46778999999999954 346776543211111 1112223455689999999998
Q ss_pred hcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhh-HHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Q 022341 133 MTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVL-RRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNG 211 (298)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~ 211 (298)
+ ++.|+++.++.+.+.+++.++++++.+.... .+| +..+...+...+...++|...+ + ...+....
T Consensus 116 l-~~~Fs~~~l~~~~~~i~~~~~~lld~l~~~g------~~D~v~~~a~~l~~~vi~~llg~~~~---d--~~~~~~~~- 182 (417)
T 4dxy_A 116 L-DKGLNLAKIRKVEDKVREVASSLIDSFAARG------ECDFAAEYAELFPVHVFMALADLPLE---D--IPVLSEYA- 182 (417)
T ss_dssp H-HHHHCHHHHHTTHHHHHHHHHHHHHHHHTTS------EEEHHHHTTTTHHHHHHHHHTTCCGG---G--HHHHHHHH-
T ss_pred h-hhhcCHHHHHHHHHHHHHHHHHHHHHhhhcC------CeeeHHHHHhhhHHHHHHHHcCCCHH---H--HHHHHhhh-
Confidence 7 5899999999999999999999999997642 233 3444333444444456786432 1 11222211
Q ss_pred HHHhhhhccCCccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcc---cCChHHHHHhhcccC-CCCHHHHHHH
Q 022341 212 ERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERN---LKCAIDHILDAQTKG-EINEDNVLYI 287 (298)
Q Consensus 212 ~~~~~~~~~~~~~~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~d~ld~ll~~~~~~-~~t~~~i~~~ 287 (298)
..+.... ...|. ... ..... ..+.+..+....+++++ .+|+++.|+....++ .+|++++...
T Consensus 183 --~~~~~~~-----~~~~~--~~~----~~~~~-~~~~~~~~~~~li~~rr~~~~ddl~s~L~~~~~~~~~~~~~e~~~~ 248 (417)
T 4dxy_A 183 --RQMTRPE-----GNTPE--EMA----TDLEA-GNNGFYAYVDPIIRARVGGDGDDLITLMVNSEINGERIAHDKAQGL 248 (417)
T ss_dssp --HHHHSCC-----CSSHH--HHH----HHHHH-HHHHHHHHHHHHHHHHTTCCCCSHHHHHHTCEETTEECCHHHHHHH
T ss_pred --hhhcccc-----ccChH--HHH----HHHHH-HHHHHHHHHHHHHHHHhcCCccchhhhhccccccCCccchhHHHHH
Confidence 1111110 11111 000 11111 11223334444444432 578999999876555 5999999999
Q ss_pred HHHHhhcccCC
Q 022341 288 VENINVAGMFI 298 (298)
Q Consensus 288 ~~~l~~aG~~~ 298 (298)
+..+++||++|
T Consensus 249 ~~~ll~AG~eT 259 (417)
T 4dxy_A 249 ISLLLLGGLDT 259 (417)
T ss_dssp HHHHHHHTTHH
T ss_pred HHHHHhhcccc
Confidence 99999999864
No 77
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=97.54 E-value=3.1e-07 Score=80.81 Aligned_cols=129 Identities=14% Similarity=0.053 Sum_probs=76.2
Q ss_pred CCCC-CCCCcccccccc-----CCCCcchHHHHHHHHHhCCeEEEeeCCeeEEEeCCHHHHHHHHHhcCccccCCCCcc-
Q 022341 33 LPPG-PLPVPVFGNWLQ-----VGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV- 105 (298)
Q Consensus 33 ~ppG-P~~~PiiGnl~~-----l~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~~p~~i~evl~~~~~~f~~r~~~~- 105 (298)
+||| |.++|++|+... +.. .++..+.++.++ ||++.. .+.+++++++++++||.+ ..|+.++...
T Consensus 35 ~ppG~~~~~P~~G~~~~~~~~~~~~-dp~~~~~~lr~~--pV~~~~---~~~~vv~~~~~v~~vl~d--~~f~~~~~~~~ 106 (381)
T 2yjn_B 35 MIRGLHWGYGSNGDPYPMLLCGHDD-DPQRRYRSMRES--GVRRSR---TETWVVADHATARQVLDD--PAFTRATGRTP 106 (381)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHTCCS-CCHHHHHHHHHH--CEEECS---SSCEEECSHHHHHHHHHC--SSEESSCCCCC
T ss_pred CCCcccccccccCCchhhcCchhcc-CchHHHHHHHhC--CceeCC---CCEEEEcCHHHHHHHHcC--CCcCCCccccc
Confidence 4567 447899998754 222 367788888765 998754 468999999999999986 3577664311
Q ss_pred -h-------hhhhccCCCceEEecCChhHHHHhhhhcccccchHHHHhhHHHHHHHHHHHHHHHhcCcccccCChhhH-H
Q 022341 106 -V-------FDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLR-R 176 (298)
Q Consensus 106 -~-------~~~~~~~~~~~~~~~~g~~Wk~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~ 176 (298)
. ...+ + .+ ++..+|+.| .+.|+ . .+.+++.++++++.|. . .+|+ .
T Consensus 107 ~~~~~~~~~~~~~-~--~~-l~~~dg~~H--------~~~Ft-----~-~~~i~~~~~~ll~~~~-g-------~~Dl~~ 160 (381)
T 2yjn_B 107 EWMRAAGAPPAEW-A--QP-FRDVHAASW--------EGEVP-----D-VGELAESFAGLLPGAG-A-------RLDLVG 160 (381)
T ss_dssp HHHHHHTCCHHHH-T--HH-HHHHHHCCC--------CSCCC-----C-CSCHHHHTSTTSCC--------------CCC
T ss_pred ccccccccccchh-h--hh-hhhCCchhh--------hhccC-----C-hHHHHHHHHHHHHhcc-C-------cchHHH
Confidence 1 1112 2 22 445678888 35555 2 5667788888887775 1 1232 1
Q ss_pred HH-HHHHHHHHHHHHhccccC
Q 022341 177 RL-QLMMYNNMYRIMFDRRFE 196 (298)
Q Consensus 177 ~~-~~~~~~~i~~~~fG~~~~ 196 (298)
.+ ....+++|+++ ||...+
T Consensus 161 ~~a~~l~~~vi~~l-~G~~~~ 180 (381)
T 2yjn_B 161 DFAWQVPVQGMTAV-LGAAGV 180 (381)
T ss_dssp CCCTHHHHHHHHTC------C
T ss_pred HHHHHHHHHHHHHH-cCCCHH
Confidence 22 23456668884 998754
No 78
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.55 E-value=0.54 Score=31.96 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=47.0
Q ss_pred cccccccCCC-CcchHHHHHHHHHhC-CeEEEeeCCeeEEEeCCHHHHHHHHHh-cCccccCCCCc
Q 022341 42 VFGNWLQVGD-DLNHRNLSDLAKKYG-DVLLLRMGQRNLVVVSSPDHAKEVLHT-QGVEFGSRTRN 104 (298)
Q Consensus 42 iiGnl~~l~~-~~~~~~~~~~~~~yG-~i~~~~~g~~~~vvi~~p~~i~evl~~-~~~~f~~r~~~ 104 (298)
.++||..=.. +.....+.++..+|| +|..+ .|++-.|...+.+.++.++.+ ++..+-+|+..
T Consensus 13 YV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 13 YVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-TGCSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-ecCEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 4899964322 112345889999995 99988 679999999999999999965 66777778743
No 79
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=88.15 E-value=2.7 Score=29.09 Aligned_cols=65 Identities=22% Similarity=0.311 Sum_probs=45.4
Q ss_pred CCCCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEee---C---CeeEEEeCCHHHHHHHHHh-cCccccC
Q 022341 33 LPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRM---G---QRNLVVVSSPDHAKEVLHT-QGVEFGS 100 (298)
Q Consensus 33 ~ppGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~---g---~~~~vvi~~p~~i~evl~~-~~~~f~~ 100 (298)
.||.|...-++||+.. +-....+.++..+||+|..+.+ + +.-.|-..+++.+..++.. ++..+.+
T Consensus 3 ~~~~~~~~l~V~nlp~---~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 74 (115)
T 3lqv_A 3 LPPEVNRILYIRNLPY---KITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSN 74 (115)
T ss_dssp CCTTCCSEEEEESCCT---TCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCCCCEEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4555655567899853 2244568888999999998887 2 3557888899999998864 4444433
No 80
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.83 E-value=2.3 Score=29.08 Aligned_cols=60 Identities=20% Similarity=0.300 Sum_probs=42.8
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeC--------CeeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG--------QRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
--++||++. +-....+.++..+||+|..+.+. +.-.|...+++.++.++..++..+.+|+
T Consensus 13 ~lfV~~Lp~---~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~ 80 (103)
T 1s79_A 13 SVYIKGFPT---DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD 80 (103)
T ss_dssp CEEEECCCT---TCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTT
T ss_pred EEEEECCCC---CCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEE
Confidence 446788853 22456788889999999888764 3456788999999999975555555544
No 81
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=85.69 E-value=1.7 Score=27.43 Aligned_cols=58 Identities=10% Similarity=0.222 Sum_probs=40.4
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
++||++ .+-....+.++..+||+|..+.+.. .-.|-..+++.++.++..++..+.+|+
T Consensus 3 ~v~nLp---~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 69 (75)
T 1iqt_A 3 FVGGLS---PDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSK 69 (75)
T ss_dssp EESCCC---SSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBC
T ss_pred EEeCCC---CCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 356664 2224466888889999998887632 346778899999999976655555544
No 82
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=82.60 E-value=3.3 Score=26.00 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=40.2
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
++||++ .+-....+.++..+||+|..+.+.. .-.|-..+++.++.++.-++..+.+|+
T Consensus 3 ~v~nlp---~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 69 (75)
T 2mss_A 3 FVGGLS---VNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKM 69 (75)
T ss_dssp EEECCC---SSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCC
T ss_pred EEecCC---CCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEE
Confidence 356664 2224567888889999998887642 346778899999999865555555554
No 83
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.29 E-value=7.1 Score=25.69 Aligned_cols=62 Identities=15% Similarity=0.269 Sum_probs=44.3
Q ss_pred CCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCCCC
Q 022341 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRTR 103 (298)
Q Consensus 39 ~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r~~ 103 (298)
..-++||+.. +-....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+.
T Consensus 6 ~~l~v~nlp~---~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (95)
T 2dnz_A 6 SGLYVGSLHF---NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 77 (95)
T ss_dssp CEEEEESCCT---TCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred cEEEEeCCCC---CCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 3446788853 224456888899999998887633 346778999999999974 5566666653
No 84
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=81.68 E-value=3.6 Score=28.63 Aligned_cols=59 Identities=15% Similarity=0.299 Sum_probs=41.4
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC-------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ-------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~-------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++|||.. +-....+.++..+||+|..+++.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 8 lfV~nLp~---~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~ 74 (115)
T 4f25_A 8 IFIKNLDK---SIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK 74 (115)
T ss_dssp EEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EEECCCCC---CCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 46788853 223467889999999998877632 347888999999999865 444444443
No 85
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=81.52 E-value=6.8 Score=24.98 Aligned_cols=60 Identities=22% Similarity=0.285 Sum_probs=41.1
Q ss_pred cccccccCCCCc---chHHHHHHHHHhCCeEEEeeC-------CeeEEEeCCHHHHHHHHHh-cCccccCC
Q 022341 42 VFGNWLQVGDDL---NHRNLSDLAKKYGDVLLLRMG-------QRNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (298)
Q Consensus 42 iiGnl~~l~~~~---~~~~~~~~~~~yG~i~~~~~g-------~~~~vvi~~p~~i~evl~~-~~~~f~~r 101 (298)
++||++.-..++ ....+.++..+||+|-.+++. +.-.|-..+++.++.++.. ++..+.+|
T Consensus 5 ~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 5 VVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp EEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 467775322111 235678888999999988875 3456778899999999975 55555555
No 86
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=80.29 E-value=2.6 Score=28.58 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=41.1
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++|||+. +-....+.++..+||+|..+++.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 22 lfV~nLp~---~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~ 90 (99)
T 4fxv_A 22 LIVNYLPQ---NMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKT 90 (99)
T ss_dssp EEEESCCT---TCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 36788853 224567888899999998887632 235778899999999865 555555544
No 87
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=79.93 E-value=8.3 Score=26.52 Aligned_cols=60 Identities=10% Similarity=0.085 Sum_probs=43.3
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---CeeEEEeCCHHHHHHHHHh-cCccccCCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---QRNLVVVSSPDHAKEVLHT-QGVEFGSRTR 103 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvi~~p~~i~evl~~-~~~~f~~r~~ 103 (298)
-++||+.. +-....+.++..+||+|..+.+. +.-.|...+++.++.++.. ++..+.+|+.
T Consensus 13 l~V~nLp~---~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 76 (111)
T 1whx_A 13 ILAKNLPA---GTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPL 76 (111)
T ss_dssp EEEESCCT---TCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Confidence 35678752 22456788899999999988874 3557788999999998865 5556666653
No 88
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=79.20 E-value=14 Score=26.11 Aligned_cols=61 Identities=21% Similarity=0.223 Sum_probs=43.2
Q ss_pred CCccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 39 ~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
..-++|||..- -....+.++..+||+|..+++. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 47 ~~l~V~nLp~~---~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~ 117 (129)
T 2kxn_B 47 CCLGVFGLSLY---TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 117 (129)
T ss_dssp SCBCEETCTTS---CCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CEEEEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34567888532 2345688889999999888873 2346778999999999975 555555554
No 89
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=78.38 E-value=8.6 Score=24.58 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=42.5
Q ss_pred CCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCC
Q 022341 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (298)
Q Consensus 37 P~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r 101 (298)
|...-++||+.. +-....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|
T Consensus 6 ~~~~l~V~nl~~---~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 77 (85)
T 3mdf_A 6 TKRVLYVGGLAE---EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 77 (85)
T ss_dssp CSSEEEEECCCT---TCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCC---CCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 334456788853 223467888899999999888632 346788899999999854 54444443
No 90
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=77.62 E-value=7.7 Score=25.73 Aligned_cols=61 Identities=10% Similarity=0.233 Sum_probs=44.4
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeC-CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG-QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g-~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
--++||+..- +-....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 12 ~l~V~nlp~~--~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (96)
T 2kvi_A 12 RLFIGNLPLK--NVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKK 74 (96)
T ss_dssp EEEEESSTTS--CCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTT
T ss_pred EEEEeCCCcc--cCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 3467888630 21346788889999999888874 5667888999999999975 555665655
No 91
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=77.08 E-value=12 Score=25.81 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=44.0
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeC--CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG--QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g--~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++|||..- -....+.++..+||+|..+.+. +.-.|...+++.++.++.. ++..+.+|.
T Consensus 19 l~V~nLp~~---~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 19 VVVSGLPPS---GSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp EEEEECCSS---CCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred EEEeCCCCC---CCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 357888532 2345688889999999888875 4567888999999999974 566666665
No 92
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.73 E-value=7.9 Score=25.41 Aligned_cols=63 Identities=22% Similarity=0.255 Sum_probs=42.5
Q ss_pred CCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeC------C---eeEEEeCCHHHHHHHHHh-cCccccCC
Q 022341 36 GPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG------Q---RNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (298)
Q Consensus 36 GP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g------~---~~~vvi~~p~~i~evl~~-~~~~f~~r 101 (298)
.|...-++||+..- -....+.++..+||+|..+.+. . .-.|-..+++.++.++.. ++..+.+|
T Consensus 13 ~~~~~l~v~nlp~~---~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 13 DPNCCLGVFGLSLY---TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp CGGGCEEEESCCSS---CCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCEEEEECCCCC---CCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 33344567888532 2445788889999999888763 2 346778899999999975 44444443
No 93
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.19 E-value=12 Score=24.99 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=42.5
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeC-------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG-------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g-------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
--++||+..- -....+.++..+||+|..+++. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~~---~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cq3_A 17 RLHVSNIPFR---FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK 84 (103)
T ss_dssp EEEEESCCTT---CCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4467888532 2345688888999999888763 3457778999999999975 555555544
No 94
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=75.95 E-value=11 Score=25.42 Aligned_cols=59 Identities=12% Similarity=0.236 Sum_probs=41.3
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++||+.. +-....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 26 l~V~nlp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 94 (106)
T 1p27_B 26 LFVTGVHE---EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 94 (106)
T ss_dssp EEEECCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEeCCCC---CCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 35688853 22345688889999999888763 2346778999999999974 555555554
No 95
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=75.80 E-value=4.5 Score=26.20 Aligned_cols=60 Identities=17% Similarity=0.285 Sum_probs=41.1
Q ss_pred CCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHhcCccccCC
Q 022341 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSR 101 (298)
Q Consensus 39 ~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~~~~~f~~r 101 (298)
.--++||+.. +-....+.++..+||+|..+++.. .-.|-..+++.++.++..++..+.+|
T Consensus 12 ~~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~ 80 (87)
T 3s7r_A 12 GKMFVGGLSW---DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGR 80 (87)
T ss_dssp TEEEEECCCT---TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTE
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCE
Confidence 3446788852 224567888899999998887631 24677889999999996654444433
No 96
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=75.78 E-value=8.8 Score=25.55 Aligned_cols=53 Identities=11% Similarity=0.041 Sum_probs=38.7
Q ss_pred CCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---eeEEEeCCHHHHHHHHHh
Q 022341 38 LPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---RNLVVVSSPDHAKEVLHT 93 (298)
Q Consensus 38 ~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---~~~vvi~~p~~i~evl~~ 93 (298)
..|-++|||..-. ....+.++..+||+|..+++.. .-.|-..+++.++.+...
T Consensus 7 ~~wL~VgNL~~~~---te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~ 62 (89)
T 2wbr_A 7 SSWLLLKNLTAQI---DGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMA 62 (89)
T ss_dssp CCEEEEECCCTTC---CCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred cceEEEeCCCccC---CHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHH
Confidence 3577789995332 3467899999999999888643 456777888778777753
No 97
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=75.56 E-value=12 Score=24.25 Aligned_cols=59 Identities=22% Similarity=0.304 Sum_probs=41.7
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeC-------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG-------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g-------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++||+.. +-....+.++..+||+|..+.+- +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 11 l~V~nlp~---~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 77 (92)
T 2dgv_A 11 IFVRNLPF---DFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 77 (92)
T ss_dssp EEECSCCT---TCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 45788853 22456788889999999887753 2346777899999999875 555565554
No 98
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=75.50 E-value=12 Score=26.17 Aligned_cols=60 Identities=12% Similarity=0.219 Sum_probs=43.6
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---------CeeEEEeCCHHHHHHHHHh-cCccccCCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGSRTR 103 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvi~~p~~i~evl~~-~~~~f~~r~~ 103 (298)
-++|||.. +-....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+++.
T Consensus 25 l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 25 LFVTGVHE---EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp EEEESCCT---TCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 45688853 22345688888999999988873 2457888999999999964 6666666653
No 99
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.76 E-value=15 Score=24.28 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=42.4
Q ss_pred CCccccccccCCCCcchHHHHHHHHHhCCeEEEeeC--------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG--------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 39 ~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
..-++||+.. +-....+.++..+||+|..+++. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 18 ~~l~v~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 18 HKLFISGLPF---SCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp SCEEEESCCT---TCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3446788853 22345688889999999888763 2346778999999999865 555555544
No 100
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=74.64 E-value=8.4 Score=25.73 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=41.2
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeC----CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG----QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g----~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
++||+.. +-....+.++..+||+|-.+.+. +.-.|-..+++.++.++.. ++..+.+++
T Consensus 4 ~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 66 (101)
T 2hvz_A 4 YVGNLGT---GAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSR 66 (101)
T ss_dssp EEECCCS---SCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCC
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcE
Confidence 3577742 22345688889999999887763 3557788999999999874 555566665
No 101
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=74.11 E-value=10 Score=24.30 Aligned_cols=58 Identities=17% Similarity=0.406 Sum_probs=40.7
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeC----------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG----------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g----------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
++||+.. +-....+.++..+||+|-.+.+. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 8 ~V~nlp~---~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (88)
T 4a8x_A 8 HIGRLTR---NVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQE 76 (88)
T ss_dssp EEECCCT---TCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCC---CCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeE
Confidence 5677742 22345788888999999888762 2446788999999999975 555554444
No 102
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.92 E-value=17 Score=24.28 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=43.6
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
--++||+..- -....+.++..+||+|..+++.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 17 TVYVGGLDEK---VSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp EEEEECCCTT---CCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 3457888532 24567888999999998888643 346788999999999975 555566665
No 103
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=73.68 E-value=11 Score=25.26 Aligned_cols=63 Identities=17% Similarity=0.207 Sum_probs=42.8
Q ss_pred CccccccccCCCC---cchHHHHHHHHHhCCeEEEeeC---------CeeEEEeCCHHHHHHHHHh-cCccccC-CC
Q 022341 40 VPVFGNWLQVGDD---LNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGS-RT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~---~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvi~~p~~i~evl~~-~~~~f~~-r~ 102 (298)
.-++|||+..... .....+.++..+||+|..+++. +.-.|-..+++.++.++.. ++..+.+ |+
T Consensus 8 ~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 8 YIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp EEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred EEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 3467888653322 1234678888999999998874 2346888899999999864 5555554 44
No 104
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.53 E-value=15 Score=24.52 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=43.9
Q ss_pred CCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeC-------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG-------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 37 P~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g-------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
+..--++||+..- -....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+++
T Consensus 14 ~~~~l~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2d9p_A 14 QVVNLYVKNLDDG---IDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 84 (103)
T ss_dssp SCCCEEEECCCTT---CCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCEEEEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 3445568888532 2345688888899999887764 2346778999999999975 555555555
No 105
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=73.14 E-value=7.2 Score=24.84 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=39.5
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
++||+.. +-....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 5 ~V~nlp~---~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 72 (83)
T 3md1_A 5 FVGDLNV---NVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 72 (83)
T ss_dssp EEECCCT---TCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 3566642 223456888889999998877531 247788999999999875 555554443
No 106
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=72.86 E-value=17 Score=23.88 Aligned_cols=58 Identities=14% Similarity=0.133 Sum_probs=41.7
Q ss_pred CCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---eeEEEeCCHHHHHHHHHh-cCcccc
Q 022341 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---RNLVVVSSPDHAKEVLHT-QGVEFG 99 (298)
Q Consensus 39 ~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---~~~vvi~~p~~i~evl~~-~~~~f~ 99 (298)
..-++||+..- -....+.++..+||+|..+++.. .-.|-..+++.++.++.. ++..+.
T Consensus 18 ~~l~V~nlp~~---~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 18 TRLWVGGLGPN---TSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp SCEEEECCCSS---CCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CEEEEeCCCCC---CCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 34467888532 23456888899999999888753 456778899999999874 555554
No 107
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.63 E-value=17 Score=23.57 Aligned_cols=60 Identities=15% Similarity=0.273 Sum_probs=43.3
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeC-CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG-QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g-~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
--++||+.. +-....+.++..+||+|..+++. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 10 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 10 KLFIGNLPR---EATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp EEEEESCCS---SCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 446788853 22446788899999999888764 4567788999999999854 445555555
No 108
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=72.54 E-value=4.7 Score=27.86 Aligned_cols=61 Identities=20% Similarity=0.249 Sum_probs=42.2
Q ss_pred CCccccccccCCCCcchHHHHHHHHHhCCeEEEeeC------C---eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG------Q---RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 39 ~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g------~---~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
.--++|||.. +-....+.++..+||+|-.+++. . .-.|...+++.++.++.. ++..+.+|+
T Consensus 7 ~~lfV~nL~~---~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~ 77 (110)
T 3s8s_A 7 KEVTFARLND---NVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNI 77 (110)
T ss_dssp CEEEEESCCT---TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred cEEEEECCCC---CCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3446788853 22456788999999999888763 1 236888999999999865 444444443
No 109
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=72.15 E-value=15 Score=24.42 Aligned_cols=59 Identities=10% Similarity=0.247 Sum_probs=41.0
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeC-CeeEEEeCCHHHHHHHHHh-cCccccCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG-QRNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g-~~~~vvi~~p~~i~evl~~-~~~~f~~r 101 (298)
-++||+.. .+-....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|
T Consensus 25 l~V~nLp~--~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (97)
T 2xnq_A 25 LFIGNLPL--KNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNFGK 85 (97)
T ss_dssp EEEESCCS--SCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred EEEeCCCc--ccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 35788852 021345688889999999998875 4567778899999999874 33333333
No 110
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=72.14 E-value=6.9 Score=27.16 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=43.1
Q ss_pred CccccccccCCCCcchHHHHHHHHHhC-CeEEEeeC-----CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYG-DVLLLRMG-----QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG-~i~~~~~g-----~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
--++|||..- -....+.++..+|| .|-.+.+. +.-.|-..+++.++.++.+ ++..+.+|+
T Consensus 30 ~l~VgnLp~~---~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~ 96 (111)
T 2jvr_A 30 RITMKNLPEG---CSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSV 96 (111)
T ss_dssp EEEEECSSCC---CCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred EEEEECCCCC---CCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 3467998532 24567899999999 78777763 4567888999999999965 555555544
No 111
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=72.14 E-value=14 Score=24.36 Aligned_cols=60 Identities=22% Similarity=0.243 Sum_probs=42.3
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
--++||+..- -....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 10 ~l~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (99)
T 1whw_A 10 RLFVRNLSYT---SSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRM 79 (99)
T ss_dssp EEEEECCCTT---CCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCE
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 4467888532 23457888899999999888742 346788999999999954 444555544
No 112
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=71.84 E-value=16 Score=24.62 Aligned_cols=62 Identities=23% Similarity=0.281 Sum_probs=44.0
Q ss_pred CccccccccCCCCc---chHHHHHHHHHhCCeEEEeeC-------CeeEEEeCCHHHHHHHHHh-cCccccCC
Q 022341 40 VPVFGNWLQVGDDL---NHRNLSDLAKKYGDVLLLRMG-------QRNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (298)
Q Consensus 40 ~PiiGnl~~l~~~~---~~~~~~~~~~~yG~i~~~~~g-------~~~~vvi~~p~~i~evl~~-~~~~f~~r 101 (298)
.-++|||..-..+. ....+.++..+||+|..+++. +.-.|-..+++.++.++.. ++..+.+|
T Consensus 17 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 17 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp EEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred EEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 45679987532211 235688888999999988875 3457788899999999875 55566555
No 113
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=71.68 E-value=5.5 Score=27.86 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=46.4
Q ss_pred CCCCCCCCccccccccCCCCc-------chHHHHHHHHHhCCeEEEeeC-----CeeEEEeCCHHHHHHHHHh-cCcccc
Q 022341 33 LPPGPLPVPVFGNWLQVGDDL-------NHRNLSDLAKKYGDVLLLRMG-----QRNLVVVSSPDHAKEVLHT-QGVEFG 99 (298)
Q Consensus 33 ~ppGP~~~PiiGnl~~l~~~~-------~~~~~~~~~~~yG~i~~~~~g-----~~~~vvi~~p~~i~evl~~-~~~~f~ 99 (298)
.+|-|+..-+|-|+....... ...-+.+...+||.|..+.+- +.-.|-..+++.++.++.. ++..|.
T Consensus 2 ~~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 2 VQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 357777777788887543210 112355667789999888873 3346777889999888865 566666
Q ss_pred CCC
Q 022341 100 SRT 102 (298)
Q Consensus 100 ~r~ 102 (298)
+|+
T Consensus 82 GR~ 84 (114)
T 3s6e_A 82 GKM 84 (114)
T ss_dssp TEE
T ss_pred CEE
Confidence 665
No 114
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.35 E-value=18 Score=23.40 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=44.8
Q ss_pred CCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeC-CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 36 GPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG-QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 36 GP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g-~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
.|..--++||+..- -....+.++..+||+|-.+++. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 7 ~~~~~l~V~nlp~~---~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 72 (90)
T 2dnp_A 7 GNTWKIFVGNVSAA---CTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKR 72 (90)
T ss_dssp CCSCCEEEESCCTT---CCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCC---CCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 33344567888532 2345688888999999988875 3556778999999999874 555555544
No 115
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.82 E-value=20 Score=23.67 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=43.6
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
--++||+..- -....+.++..+||+|..+.+.. .-.|-..+++.++.++.-++..+.+|+
T Consensus 12 ~l~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 80 (99)
T 2dgs_A 12 KIFVGGIPHN---CGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKK 80 (99)
T ss_dssp EEEEESCCSS---CCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCB
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeE
Confidence 3467888532 23456888899999998888732 346778999999999976666666665
No 116
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=70.76 E-value=14 Score=24.44 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=42.5
Q ss_pred CCccccccccCCCCcchHHHHHHHHHhCCeEEEeeC------------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG------------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 39 ~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g------------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
..-++|||..- -....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 6 ~~l~V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (98)
T 2cpf_A 6 SGLFIKNLNFS---TTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHK 79 (98)
T ss_dssp CCEEEESCCTT---CCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEE
T ss_pred CEEEEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 34467888532 2446788888999999887764 2346778899999999975 555555544
No 117
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=70.75 E-value=14 Score=26.21 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=41.5
Q ss_pred ccccccccCCCC-cchHHHHHHHHHhCCeEEEeeC------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDD-LNHRNLSDLAKKYGDVLLLRMG------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~-~~~~~~~~~~~~yG~i~~~~~g------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++|||..-... .....+.++..+||+|..+.+. +.-.|...+++.+..++.. ++..+.+|+
T Consensus 32 LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 32 VLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred EEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 457888632111 1112466788999999888763 3457788899999999865 555666665
No 118
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.69 E-value=12 Score=24.40 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=41.0
Q ss_pred CCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccC
Q 022341 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGS 100 (298)
Q Consensus 39 ~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~ 100 (298)
..-++||+.. +-....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+
T Consensus 17 ~~l~V~nlp~---~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 85 (94)
T 2e5h_A 17 STVYVSNLPF---SLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG 85 (94)
T ss_dssp TSEEEESCCT---TSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT
T ss_pred CEEEEECCCC---CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 3446788852 224456888889999998888742 347788999999999854 3333333
No 119
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=70.63 E-value=6.6 Score=26.90 Aligned_cols=68 Identities=22% Similarity=0.275 Sum_probs=44.9
Q ss_pred CCCCCCccccccccCC--CCcchHHHHHHHHHhCCeEEEeeCC----------eeEEEeCCHHHHHHHHHh-cCccccCC
Q 022341 35 PGPLPVPVFGNWLQVG--DDLNHRNLSDLAKKYGDVLLLRMGQ----------RNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (298)
Q Consensus 35 pGP~~~PiiGnl~~l~--~~~~~~~~~~~~~~yG~i~~~~~g~----------~~~vvi~~p~~i~evl~~-~~~~f~~r 101 (298)
|.|...-+++|+..-. .+.....+.+...+||+|-.+++.. .-.|-..+++.+..+... ++..|.+|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 4566666788887321 0113456777788999998887631 235677899999988865 66666666
Q ss_pred C
Q 022341 102 T 102 (298)
Q Consensus 102 ~ 102 (298)
+
T Consensus 85 ~ 85 (105)
T 2pe8_A 85 V 85 (105)
T ss_dssp E
T ss_pred E
Confidence 5
No 120
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.40 E-value=15 Score=24.86 Aligned_cols=60 Identities=13% Similarity=0.240 Sum_probs=42.5
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
.-++||+.. +-....+.++..+||+|..+++. +.-.|-..+++.+..++.. ++..+.+|+
T Consensus 27 ~l~V~nl~~---~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 90 (109)
T 1x4g_A 27 TVYCGGIAS---GLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHV 90 (109)
T ss_dssp EEEEECCSS---CCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 345688853 22345788888999999888874 4567788999999999854 554554444
No 121
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=70.02 E-value=14 Score=24.26 Aligned_cols=60 Identities=17% Similarity=0.297 Sum_probs=40.8
Q ss_pred CccccccccCCCCcchHHHH----HHHHHhCCeEEEeeC------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLS----DLAKKYGDVLLLRMG------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~----~~~~~yG~i~~~~~g------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
.-++||+..-. ....+. ++..+||+|-.+.+. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 10 ~l~V~nLp~~~---~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 10 TIYINNLNEKI---KKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp EEEEESCCTTS---CHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCCCC---CHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 34678885321 233344 888999999988764 4567888999999999865 444444433
No 122
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=69.67 E-value=16 Score=24.76 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=41.3
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++||+.. +-....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 29 l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 97 (110)
T 1oo0_B 29 LFVTSIHE---EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 97 (110)
T ss_dssp EEEESCCT---TCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 35688853 22345688889999999888874 2457778999999999874 444444443
No 123
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.57 E-value=12 Score=24.70 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=44.0
Q ss_pred CCCCCccccccccCCCCcchHHHHHHHHHhCCeE-EEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 36 GPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVL-LLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 36 GP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~-~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
.|..--++||+..- -....+.++..+||+|. .+++.. .-.|-..+++.++.++.. ++..+.+|.
T Consensus 7 ~~~~~l~V~nLp~~---~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 7 GMAASLWMGDLEPY---MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp SSSSEEEECSCCTT---CCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CCccEEEEeCCCCC---CCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 34444567888532 24467888899999988 776531 346777899999999974 555566665
No 124
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=69.50 E-value=29 Score=25.03 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=43.4
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeC----CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG----QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g----~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
--++||+..-. ....+.++..+||+|-.+++. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 75 ~l~V~nl~~~~---t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 139 (150)
T 2i2y_A 75 KVYVGNLGNNG---NKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCR 139 (150)
T ss_dssp EEEEESCCSCC---SCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSC
T ss_pred EEEEeCCCCCC---CHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 34678885322 345688888999999988874 3557788999999999874 555565555
No 125
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=69.38 E-value=7.1 Score=25.13 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=40.0
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r 101 (298)
-++||+..- -....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|
T Consensus 9 l~v~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 76 (87)
T 3bs9_A 9 VFVGDLSPE---ITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 76 (87)
T ss_dssp EEEESCCTT---CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEEeCCCCC---CCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 356888532 23456888889999998877632 346778899999999975 44444443
No 126
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.15 E-value=16 Score=24.14 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=40.5
Q ss_pred ccccccccCCCCcchHHHH----HHHHHhCCeEEEeeC------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLS----DLAKKYGDVLLLRMG------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~----~~~~~yG~i~~~~~g------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++||+..-. ....+. ++..+||+|..+++. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 12 l~V~nL~~~~---~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 12 VQVSNIDYRL---SRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp EEEESCCTTS---CHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred EEEECCCCCC---CHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 4678885322 233444 888999999988875 3356778899999999874 444555544
No 127
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.01 E-value=12 Score=25.12 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=42.6
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
--++|||..- -....+.++..+||+|..+.+.. .-.|-..+++.++.++..++..+.+|+
T Consensus 18 ~l~V~nlp~~---~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 86 (105)
T 2dh8_A 18 KLFVGGLDWS---TTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRN 86 (105)
T ss_dssp EECCBSCCTT---CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEE
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 4467888532 24467888899999998877632 346778899999999987655565554
No 128
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.96 E-value=19 Score=22.82 Aligned_cols=59 Identities=10% Similarity=0.185 Sum_probs=41.4
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---CeeEEEeCCHHHHHHHHHh--cCccccCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---QRNLVVVSSPDHAKEVLHT--QGVEFGSR 101 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvi~~p~~i~evl~~--~~~~f~~r 101 (298)
--++||+.. +-....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|
T Consensus 14 ~l~V~~l~~---~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 14 TLYVGGLGD---TITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp CEEEECCTT---TSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred EEEEcCCCC---CCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 346788853 22456788889999999888764 3567778899999999974 33344333
No 129
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=68.81 E-value=28 Score=26.07 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=39.8
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeC-----CeeEEEeCCHHHHHHHHHh-cCccccC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG-----QRNLVVVSSPDHAKEVLHT-QGVEFGS 100 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g-----~~~~vvi~~p~~i~evl~~-~~~~f~~ 100 (298)
++|||.. .-....+.++..+||+|-.+++. +.-.|-..|++.++.++.. ++..+.+
T Consensus 50 ~VgNL~~---~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g 111 (164)
T 1sjr_A 50 IVENLFY---PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN 111 (164)
T ss_dssp EECSCCS---CCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSS
T ss_pred EEeCcCC---CCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 3688852 11345788999999999888863 2457788899999998875 4555533
No 130
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=68.75 E-value=16 Score=24.14 Aligned_cols=59 Identities=17% Similarity=0.239 Sum_probs=39.9
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEE--------EeeC---------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLL--------LRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~--------~~~g---------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++||+.. +-....+.++..+||.|.. +++. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 16 l~V~nLp~---~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 92 (99)
T 2la6_A 16 IFVQGLGE---NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 92 (99)
T ss_dssp EEEECCCS---SCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEeCCCC---CCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 35788853 2245678888999999876 5542 1346778899999999864 555555554
No 131
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=68.50 E-value=12 Score=27.76 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=41.2
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++|||.. .-....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+++
T Consensus 75 l~V~nLp~---~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 143 (165)
T 1rk8_A 75 LFVTSIHE---EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 143 (165)
T ss_dssp EEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCC---CCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 35688853 22456788999999999887763 2446778899999999864 554454443
No 132
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=67.88 E-value=9.6 Score=24.59 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=39.3
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
++||+.. +-....+.++..+||+|..+++.. .-.|-..+++.++.++.-++..+.+|+
T Consensus 10 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~ 76 (89)
T 3ucg_A 10 YVGNVDY---GATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQ 76 (89)
T ss_dssp EEESCCT---TCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEE
T ss_pred EEeCCCC---CCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcE
Confidence 4566642 223456888889999998877532 346778899999998844555555444
No 133
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=67.84 E-value=20 Score=23.90 Aligned_cols=61 Identities=11% Similarity=0.188 Sum_probs=43.6
Q ss_pred CCccccccccCCCCcchHHHHHHHHHhCCeEEEeeC-CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG-QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 39 ~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g-~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
..-++||+..- -....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+++
T Consensus 12 ~~l~V~nl~~~---~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (103)
T 2dgu_A 12 KVLFVRNLANT---VTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGEN 74 (103)
T ss_dssp CCEEEECCCTT---CCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEEEeCCCCC---CCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCCE
Confidence 34467888532 2346788889999999998875 4556778899999999975 555555544
No 134
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=67.68 E-value=11 Score=25.73 Aligned_cols=59 Identities=12% Similarity=0.287 Sum_probs=41.6
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEee-CCeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRM-GQRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~-g~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++||+.. +-....+.++..+||+|-.+.+ -+.-.|-..+++.++.++.. ++..+.+|+
T Consensus 34 l~V~nLp~---~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 34 LFVRPFPL---DVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp EEECSSCT---TCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEECCCC---CCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 35688742 2234568888999999988776 45667788999999999865 555554443
No 135
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.49 E-value=12 Score=25.08 Aligned_cols=63 Identities=11% Similarity=0.193 Sum_probs=42.4
Q ss_pred CCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC----------eeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 36 GPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ----------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 36 GP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~----------~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
.|+.--++|||..- -....+.++..+|| |..+++.. .-.|-..+++.++.++.-++..+.+|+
T Consensus 13 ~~~~~l~V~nlp~~---~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 85 (104)
T 1wi8_A 13 SPPYTAFLGNLPYD---VTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKR 85 (104)
T ss_dssp SSCEEEEEESCCSS---CCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEE
T ss_pred CCCCEEEEeCCCCc---CCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcE
Confidence 33334467888532 23456888889999 88888631 346788999999999944555555554
No 136
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.22 E-value=15 Score=24.71 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=42.4
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEE-EeeC--------CeeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLL-LRMG--------QRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~-~~~g--------~~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
-++|||..- -....+.++..+||.|-. +.+. +.-.|-..+++.++.++..++..+.+|+
T Consensus 18 l~V~nLp~~---~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~ 85 (104)
T 1wg5_A 18 VRLRGLPFG---CSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 85 (104)
T ss_dssp EEEESCCTT---CCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSC
T ss_pred EEEeCCCCC---CCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcE
Confidence 357888532 245678888899998765 5442 3457888999999999988766666665
No 137
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=67.19 E-value=14 Score=24.05 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=36.7
Q ss_pred CCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeC----CeeEEEeCCHHHHHHH
Q 022341 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG----QRNLVVVSSPDHAKEV 90 (298)
Q Consensus 37 P~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g----~~~~vvi~~p~~i~ev 90 (298)
|+..-++|||..- -....+.++..+||+|..+++. +.-.|-..+++.++.+
T Consensus 10 ~~~~l~V~~Lp~~---~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 10 HGSKVFVGRCTED---MTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp -CCEEEEESCCTT---CCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHH
T ss_pred CCCEEEEeCCCCC---CCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHH
Confidence 3344567998532 2446788899999999998875 3567888999998853
No 138
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=66.99 E-value=9.4 Score=26.63 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=39.5
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
++||+.. +-....+.++..+||+|..+.+.. .-.|...+++.++.++.-++..+.+|+
T Consensus 40 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 106 (124)
T 2jwn_A 40 YVGNVDY---GSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRT 106 (124)
T ss_dssp EEEEECT---TCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEE
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence 4567642 223456888899999998877632 346788999999999943555555444
No 139
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.89 E-value=14 Score=25.33 Aligned_cols=60 Identities=12% Similarity=0.093 Sum_probs=42.3
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
--++|||..- -....+.++..+||+|..+++.. .-.|-..+++.++.++......+.+|+
T Consensus 19 ~l~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 87 (116)
T 2cqd_A 19 KIFVGGLPYH---TTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRK 87 (116)
T ss_dssp EEEEECCCSS---CCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEE
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEE
Confidence 3457888532 23467888889999998888753 346778999999999976443555544
No 140
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=66.71 E-value=12 Score=25.46 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=42.5
Q ss_pred CCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 39 ~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
.--++||+.. +-....+.++..+||+|..+++.. .-.|-..+++.++.++...+..+.+|+
T Consensus 26 ~~lfV~nLp~---~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~ 95 (109)
T 2rs2_A 26 CKMFIGGLSW---QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKT 95 (109)
T ss_dssp CCEEEESCCT---TCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEE
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEE
Confidence 3446788852 223456888899999998888642 347788999999999976544444443
No 141
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.62 E-value=8.3 Score=24.08 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=38.4
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
++||++. +-....+.++..+||+|..+.+.. .-.|-..+++.++.++...+..+.+|+
T Consensus 4 ~v~nlp~---~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 70 (77)
T 1uaw_A 4 FIGGLSW---QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKT 70 (77)
T ss_dssp EEESCCS---SCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCC
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEE
Confidence 4567642 223456888889999987776532 335666789999999876545555554
No 142
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.29 E-value=25 Score=23.21 Aligned_cols=61 Identities=21% Similarity=0.303 Sum_probs=43.3
Q ss_pred CCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 39 ~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
..-++|||.. +-....+.++..+||+|..+++.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 13 ~~l~v~nLp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 1x5s_A 13 GKLFVGGLSF---DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ 83 (102)
T ss_dssp SEEEEESCCT---TCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred CEEEEECCCC---CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3456788853 224466888889999998887743 346778899999999954 555566655
No 143
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.12 E-value=24 Score=23.79 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=41.7
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeC--CeeEEEeCCHHHHHHHHHh-cCccccC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG--QRNLVVVSSPDHAKEVLHT-QGVEFGS 100 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g--~~~~vvi~~p~~i~evl~~-~~~~f~~ 100 (298)
-++|||.. +-....+.++..+||+|..+.+. +.-.|...+++.++.++.. ++..+.+
T Consensus 18 l~V~nLp~---~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 18 VVVSGLPP---SGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp EEEESCCS---SCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 35788852 22456788999999999888764 4677888999999999975 4444444
No 144
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.10 E-value=27 Score=23.34 Aligned_cols=60 Identities=17% Similarity=0.293 Sum_probs=43.7
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCCe----------eEEEeCCHHHHHHHHHh--cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQR----------NLVVVSSPDHAKEVLHT--QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~~----------~~vvi~~p~~i~evl~~--~~~~f~~r~ 102 (298)
.-++||+..- -....+.++..+||+|..+.+... -.|-..+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 17 KILVRNIPFQ---ANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp CEEEESCCTT---CCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred EEEEeCCCCc---CCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 4467888532 244568888999999998887433 46778899999999975 566666665
No 145
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.02 E-value=20 Score=23.56 Aligned_cols=58 Identities=14% Similarity=0.165 Sum_probs=41.3
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
--++||+ .. ....+.++..+||+|..+.++ +.-.|-..+++.+..++.. ++..+.+|+
T Consensus 17 ~l~V~n~-~~----t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 78 (97)
T 1x5p_A 17 TLYVYGE-DM----TPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 78 (97)
T ss_dssp EEEEECS-SC----CHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred EEEEcCC-CC----CHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 3457883 22 356788999999999998886 3456778899999999965 444444443
No 146
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=65.91 E-value=19 Score=23.66 Aligned_cols=59 Identities=20% Similarity=0.329 Sum_probs=40.5
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++||+.. +-....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 5 l~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 73 (96)
T 2x1f_A 5 VYLGSIPY---DQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRF 73 (96)
T ss_dssp EEEESCCT---TCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEECCCC---CCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 35677742 22345688888999999988873 2346778999999999864 444444433
No 147
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.81 E-value=26 Score=23.23 Aligned_cols=65 Identities=20% Similarity=0.211 Sum_probs=44.7
Q ss_pred CCCCCCccccccccCCCCcchHHHHHHHHH-hCCeEEEeeC--------CeeEEEeCCHHHHHHHHHh-cCcc-ccCCC
Q 022341 35 PGPLPVPVFGNWLQVGDDLNHRNLSDLAKK-YGDVLLLRMG--------QRNLVVVSSPDHAKEVLHT-QGVE-FGSRT 102 (298)
Q Consensus 35 pGP~~~PiiGnl~~l~~~~~~~~~~~~~~~-yG~i~~~~~g--------~~~~vvi~~p~~i~evl~~-~~~~-f~~r~ 102 (298)
+.|..--++|||..- -....+.++..+ ||+|..+.+. +.-.|-..+++.++.++.. ++.. +.+|+
T Consensus 6 ~~~~~~l~V~nLp~~---~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~ 81 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPD---VDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 81 (104)
T ss_dssp SSCCCCEEEECCCTT---CCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred CCCCcEEEEeCCCCC---CCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence 344445578998532 234568888888 9999887763 2346778899999999974 4445 66665
No 148
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.76 E-value=19 Score=23.44 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=42.5
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC-eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ-RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~-~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
--++||+.. +-....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 12 ~l~V~nLp~---~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 12 KLHVGNISP---TCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp EEEEESCCS---SCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 346788853 224567888999999998888754 456678899999999864 555555544
No 149
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=65.48 E-value=20 Score=24.29 Aligned_cols=59 Identities=17% Similarity=0.329 Sum_probs=41.6
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++||+.. .-....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 29 l~V~nLp~---~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 29 LYVGSLHF---NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp EEEECCCS---SCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 35788853 22445688888999999887763 1346788999999999864 555555554
No 150
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.89 E-value=27 Score=23.83 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=44.1
Q ss_pred CCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---CeeEEEeCCHHHHHHHHHh-c--CccccCCC
Q 022341 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---QRNLVVVSSPDHAKEVLHT-Q--GVEFGSRT 102 (298)
Q Consensus 37 P~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvi~~p~~i~evl~~-~--~~~f~~r~ 102 (298)
|...-++|||..- -....+.++..+||+|-.+++. +.-.|-..+++.++.++.. + ...+.+|+
T Consensus 15 ~~~~LfV~nLp~~---vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~ 83 (105)
T 1sjq_A 15 PSRVIHIRKLPID---VTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 83 (105)
T ss_dssp CCCEEEECSCCTT---SCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEE
T ss_pred CCCEEEEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 3344567998632 1345688999999999888865 4567888899999999873 2 23455555
No 151
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=64.73 E-value=5.5 Score=27.38 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=42.6
Q ss_pred CCccccccccCCCCcchHHHH---HHHHHhCCeEEEeeCC------------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 39 PVPVFGNWLQVGDDLNHRNLS---DLAKKYGDVLLLRMGQ------------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 39 ~~PiiGnl~~l~~~~~~~~~~---~~~~~yG~i~~~~~g~------------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
..-++|||..-. ....+. ++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 16 ~~l~V~nLp~~~---~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 16 NLVFVVGLSQRL---ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp SCEEEEEECTTT---CCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEEEECCCCCC---CHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 344678885322 234566 7788999998887642 446778899999999986 666666655
No 152
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.72 E-value=13 Score=23.68 Aligned_cols=62 Identities=13% Similarity=0.179 Sum_probs=40.7
Q ss_pred CCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCC
Q 022341 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (298)
Q Consensus 37 P~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r 101 (298)
|...-++||+.. +-....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|
T Consensus 4 ~~~~l~v~nlp~---~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (85)
T 1x4e_A 4 GSSGLYIRGLQP---GTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ 75 (85)
T ss_dssp CCCEEEEESCCT---TCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred CCcEEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE
Confidence 334446788853 223456778888999998887532 346778999999998863 33333333
No 153
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.70 E-value=22 Score=23.62 Aligned_cols=60 Identities=15% Similarity=0.096 Sum_probs=42.0
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC-------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ-------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~-------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
.-++|||..- -....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cqi_A 17 TLYVGNLSRD---VTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKE 84 (103)
T ss_dssp EEEEESCCTT---CCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred EEEEeCCCcc---CCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCe
Confidence 4467888532 24467888899999998887643 456778899999999863 444444444
No 154
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=64.67 E-value=13 Score=24.33 Aligned_cols=60 Identities=15% Similarity=0.223 Sum_probs=41.3
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC--------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ--------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
--++||+..- -....+.++..+||+|..+++.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 18 ~l~v~nlp~~---~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (95)
T 2ywk_A 18 TVFVGNLEAR---VREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP 86 (95)
T ss_dssp EEEEECCCTT---CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred EEEEECCCCC---CCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence 3457888532 23467888899999998887642 346778899999999874 444444443
No 155
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=64.58 E-value=26 Score=25.42 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=43.1
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
.-++|||.. +-....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 72 ~l~v~nl~~---~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 141 (158)
T 2kn4_A 72 SLKVDNLTY---RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 141 (158)
T ss_dssp EEEEESCCT---TCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 345788742 224466888889999998888753 246788999999999975 555565555
No 156
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=63.93 E-value=15 Score=24.71 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=40.4
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeC--------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG--------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++||+.. .-....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 32 l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 99 (107)
T 3ulh_A 32 LLVSNLDF---GVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRP 99 (107)
T ss_dssp EEEESCCT---TCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 35688743 22345688888999999877754 1346778899999999875 555444443
No 157
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.83 E-value=30 Score=23.18 Aligned_cols=59 Identities=12% Similarity=0.023 Sum_probs=41.1
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCC-eEEEeeC----------CeeEEEeCCHHHHHHHHHh--c-CccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGD-VLLLRMG----------QRNLVVVSSPDHAKEVLHT--Q-GVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~-i~~~~~g----------~~~~vvi~~p~~i~evl~~--~-~~~f~~r~ 102 (298)
-++|||.. +-....+.++..+||+ |..+.+. +.-.|-..+++.++.++.. + ...+.+|+
T Consensus 11 l~V~nLp~---~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 11 LFIGGIPK---MKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp EEEECCCT---TSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred EEEeCCCC---cCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 46788853 2244678888999998 9888764 2457778899999999975 2 24455544
No 158
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.22 E-value=7.1 Score=26.93 Aligned_cols=59 Identities=12% Similarity=0.153 Sum_probs=41.2
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
-++|||.. +-....+.++..+||+|..+.+.. .-.|...+++.++.++..++..+.+|+
T Consensus 30 l~V~nLp~---~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 97 (116)
T 1x4b_A 30 LFIGGLSF---ETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRV 97 (116)
T ss_dssp EEEECCTT---CCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEE
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEE
Confidence 35687752 223456888899999997777632 346778899999999976555555544
No 159
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.16 E-value=31 Score=23.15 Aligned_cols=59 Identities=19% Similarity=0.376 Sum_probs=41.2
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++|||.. +-....+.++..+||+|..+++-. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 25 l~V~nLp~---~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 90 (109)
T 1x4a_A 25 IYVGNLPP---DIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR 90 (109)
T ss_dssp EEEESCCT---TCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 35788853 224567889999999998777642 347788999999999954 444555444
No 160
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.04 E-value=11 Score=25.93 Aligned_cols=57 Identities=14% Similarity=0.082 Sum_probs=38.6
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeC---------CeeEEEeCCHHHHHHHHHhcCccccCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHTQGVEFGSR 101 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvi~~p~~i~evl~~~~~~f~~r 101 (298)
++||+.. +-....+.++..+||+|..+.+. +.-.|-..+++.++.++.-++..+.+|
T Consensus 29 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~ 94 (114)
T 2cq4_A 29 FCMQLAA---RIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGV 94 (114)
T ss_dssp EEESCCT---TCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTE
T ss_pred EEeCCCC---CCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCe
Confidence 4677742 22345688889999999988874 234677888999999884354444333
No 161
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.69 E-value=18 Score=24.10 Aligned_cols=60 Identities=20% Similarity=0.314 Sum_probs=40.3
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
--++||+.. +-....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 10 ~l~V~nlp~---~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (104)
T 1p1t_A 10 SVFVGNIPY---EATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRA 79 (104)
T ss_dssp CEEEESCCT---TSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSC
T ss_pred EEEEeCCCC---cCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 345788752 22345688888999998777753 2346777899999999964 444444443
No 162
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=62.62 E-value=23 Score=22.54 Aligned_cols=58 Identities=17% Similarity=0.287 Sum_probs=40.2
Q ss_pred ccccccccCCCCcchHHHHHHHHHh----C-------CeEEEeeC---CeeEEEeCCHHHHHHHHHhcCccccCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKY----G-------DVLLLRMG---QRNLVVVSSPDHAKEVLHTQGVEFGSR 101 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~y----G-------~i~~~~~g---~~~~vvi~~p~~i~evl~~~~~~f~~r 101 (298)
-++||+.. +-....+.++..+| | +|..+++. +.-.|-..+++.++.++.-++..+.+|
T Consensus 9 l~V~nLp~---~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~ 80 (87)
T 2hzc_A 9 LYVGNIPF---GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQ 80 (87)
T ss_dssp EEEESCCT---TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred EEEeCCCC---CCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHHhcCCCEECCe
Confidence 36788853 22345677888888 8 89888875 455778889999999984344444444
No 163
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=61.81 E-value=15 Score=25.13 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=41.6
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
--++|||..- -....+.++..+||+|..+++.. .-.|...+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 17 HVFVGDLSPE---ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp EEEEESCCTT---CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3467888532 23467888899999998877632 346778899999999964 444454444
No 164
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.80 E-value=8.1 Score=26.41 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=40.6
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeC-------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG-------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g-------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++||+.. +-....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 32 l~V~nLp~---~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 32 LHVSNIPF---RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp EEEESCCT---TCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred EEEECCCC---cCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 35688742 22345688889999999877763 3456778899999998874 444454443
No 165
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=61.19 E-value=18 Score=26.64 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=39.6
Q ss_pred cccccccCCCCcchHHHHHHHHHhC--CeEEEeeC-----C----eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYG--DVLLLRMG-----Q----RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG--~i~~~~~g-----~----~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
++|||.. +-....+.++..+|| +|..+++. + .-.|-..+++.++.++.. ++..+.+|+
T Consensus 59 fVgnLp~---~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~ 128 (156)
T 3n9u_C 59 YVGSFSW---WTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEK 128 (156)
T ss_dssp EEECCCT---TCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEE
T ss_pred EEeCCCC---CCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 4566632 223457888899999 88888762 1 347778899999999976 554444443
No 166
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.07 E-value=18 Score=24.06 Aligned_cols=63 Identities=16% Similarity=0.194 Sum_probs=43.0
Q ss_pred CCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 37 P~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
|...-++||+..- -....+.++..+||+|..+++.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 11 ~~~~l~V~nLp~~---~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2cqb_A 11 TKRVLYVGGLAEE---VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 83 (102)
T ss_dssp CCSCEEEESCCSS---CCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCEEEEeCCCCC---CCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3344567888532 24567888899999998887732 346677899999999864 555555444
No 167
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=60.88 E-value=33 Score=26.15 Aligned_cols=58 Identities=19% Similarity=0.322 Sum_probs=40.3
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeC---------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
++||+.. +-....+.++..+||+|..+++- +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 32 ~V~nLp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 99 (216)
T 2qfj_A 32 YVGSIYY---ELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRN 99 (216)
T ss_dssp EEECCCT---TCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CC
T ss_pred EEECCCC---CCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCee
Confidence 5677742 22446788899999999988873 2457788999999999974 444444443
No 168
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.88 E-value=26 Score=23.09 Aligned_cols=60 Identities=13% Similarity=0.141 Sum_probs=42.5
Q ss_pred CccccccccCCCCcchHHHHHHHHHh--CCeEEEeeC-CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKY--GDVLLLRMG-QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~y--G~i~~~~~g-~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
.-++|||..- -....+.++..+| |.|..+... +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~nLp~~---~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 17 ILYVRNLMLS---TSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp EEEEESCCTT---CCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4467888532 2446788889999 889888765 4567788999999999873 444554443
No 169
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=60.29 E-value=5.8 Score=26.99 Aligned_cols=54 Identities=17% Similarity=0.342 Sum_probs=36.5
Q ss_pred CCCCcchHHHHHHHHHhCCeEEEeeCCe-eEEEeCCHHHHHHHHHh--cCccccCCC
Q 022341 49 VGDDLNHRNLSDLAKKYGDVLLLRMGQR-NLVVVSSPDHAKEVLHT--QGVEFGSRT 102 (298)
Q Consensus 49 l~~~~~~~~~~~~~~~yG~i~~~~~g~~-~~vvi~~p~~i~evl~~--~~~~f~~r~ 102 (298)
|+++-...-+.++...||.+.--|+-.. -.+++++|+.|++++.. +...|.-|+
T Consensus 13 FP~ewKt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~~~~~y~i~t 69 (101)
T 3ctr_A 13 FPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSKYAESYRIQT 69 (101)
T ss_dssp CCTTCCHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHTTCSSCCCCC
T ss_pred CChhhhhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEEE
Confidence 4443223457788889997777787754 46789999999999973 344444333
No 170
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=59.88 E-value=13 Score=28.65 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=40.9
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeC--------CeeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG--------QRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
++||++ .+-....+.++..+||+|-.+++. +.-.|-..+++.++.++...+..+.+|+
T Consensus 113 ~V~nLp---~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~ 178 (193)
T 2voo_A 113 YIKGFP---TDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD 178 (193)
T ss_dssp EEECCC---TTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEE
T ss_pred EecCCC---CcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 467774 222456788999999999887753 2456778899999999976544454444
No 171
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=59.86 E-value=35 Score=26.63 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=43.7
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeC----CeeEEEeCCHHHHHHHHH-hcCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG----QRNLVVVSSPDHAKEVLH-TQGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g----~~~~vvi~~p~~i~evl~-~~~~~f~~r~ 102 (298)
-++||+..- +-....+.++..+||+|..+++- +.-.|-..+++.++.++. -++..+.+|+
T Consensus 37 l~V~nLp~~--~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 101 (229)
T 2adc_A 37 LLVSNLNPE--RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 101 (229)
T ss_dssp EEEESCCTT--TCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSB
T ss_pred EEEeCCCcc--cCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 357888530 21346788889999999988875 446788899999999996 4566666665
No 172
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=59.74 E-value=31 Score=23.72 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=43.7
Q ss_pred CCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC--------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ--------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 39 ~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
.--++||+..- -....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 8 ~~l~V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 77 (116)
T 2fy1_A 8 GKLFIGGLNRE---TNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKA 77 (116)
T ss_dssp CEEEEECCTTT---CCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB
T ss_pred CEEEEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34467888532 24467888899999998777642 456778999999999975 556666665
No 173
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.46 E-value=23 Score=23.49 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=42.9
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
--++|||..- -....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 15 ~l~V~nLp~~---~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2dnm_A 15 TLKVDNLTYR---TSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE 84 (103)
T ss_dssp EEEEESCCTT---CCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 3457888532 23466888899999999888742 346778899999999874 555565555
No 174
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=59.41 E-value=18 Score=25.26 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=41.1
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++||+ .. ....+.++..+||+|..+.++ +.-.|...+++.++.++.. ++..+.+|+
T Consensus 42 lfVgnl-~~----te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 102 (121)
T 2bz2_A 42 LYVYGE-DM----TPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 102 (121)
T ss_dssp EEEECS-SC----CHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred EEEcCC-CC----CHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 357883 22 356788899999999888776 4556778899999999865 555555555
No 175
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=58.90 E-value=20 Score=25.62 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=42.0
Q ss_pred CCCCCCCCc--cccccccCCCCcchHHHHHHHHHhCCeEEEeeCC-----eeEEEeCCHHHHHHHHHh-cCccccC
Q 022341 33 LPPGPLPVP--VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ-----RNLVVVSSPDHAKEVLHT-QGVEFGS 100 (298)
Q Consensus 33 ~ppGP~~~P--iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~-----~~~vvi~~p~~i~evl~~-~~~~f~~ 100 (298)
++++|...- ++||+..- -....+.++..+||+|-.+++.. +-.|...+++.++.++.. ++..+-+
T Consensus 21 ~~~~ps~VL~I~V~NL~~~---vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYP---VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp ----CCSEEEEEEESCCSC---CCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred ccCCCCceEEEEECCCCCC---CCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 345555433 47999521 13457889999999998887643 357888899999888864 4444444
No 176
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.77 E-value=22 Score=23.23 Aligned_cols=59 Identities=15% Similarity=0.241 Sum_probs=40.0
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC----eeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ----RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~----~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
-++||+.. +-....+.++..+||+|-.+..-. .-.|-..+++.++.++.-++..+.+|+
T Consensus 11 l~V~nl~~---~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~ 73 (94)
T 2e5g_A 11 VFVSGFPR---GVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHR 73 (94)
T ss_dssp EEEECCCT---TCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEE
T ss_pred EEEECCCC---CCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEE
Confidence 35788853 224567888889999998763322 345677899999999975555555544
No 177
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=58.72 E-value=17 Score=27.33 Aligned_cols=60 Identities=8% Similarity=0.133 Sum_probs=42.2
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
--++|||.. +-....+.++..+||+|..+++-. .-.|...+++.++.++..++..+.+|+
T Consensus 15 ~l~V~nLp~---~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 83 (196)
T 1l3k_A 15 KLFIGGLSF---ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRV 83 (196)
T ss_dssp EEEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEE
Confidence 446788853 224467889999999998777531 346888999999999976554444443
No 178
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=58.49 E-value=30 Score=23.41 Aligned_cols=66 Identities=8% Similarity=0.031 Sum_probs=44.8
Q ss_pred CCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---eeEEEeCCHHHHHHHHHh---cCccccCCC
Q 022341 35 PGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---RNLVVVSSPDHAKEVLHT---QGVEFGSRT 102 (298)
Q Consensus 35 pGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---~~~vvi~~p~~i~evl~~---~~~~f~~r~ 102 (298)
+.|...-++|||..- +-....+.++..+||.|-.+++.. .-.|-..+++.+..++.. +...+.+|+
T Consensus 12 ~~p~~~l~V~nLp~~--~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 12 VETRRVVHIMDFQRG--KNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCCCEEEEESCCCS--SSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCEEEEeCCCCC--cCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 344445668999631 213456888889999999998763 457888899999998864 222345554
No 179
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=58.42 E-value=22 Score=24.17 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCeEEEeeCC-----------eeEEEeCCHHHHHHHHHh-cCccccCCCC
Q 022341 57 NLSDLAKKYGDVLLLRMGQ-----------RNLVVVSSPDHAKEVLHT-QGVEFGSRTR 103 (298)
Q Consensus 57 ~~~~~~~~yG~i~~~~~g~-----------~~~vvi~~p~~i~evl~~-~~~~f~~r~~ 103 (298)
-+.+...+||+|-.+++.. .-.|-..+++.|+.++.. ++..|.+|+.
T Consensus 31 dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i 89 (105)
T 3v4m_A 31 DVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVV 89 (105)
T ss_dssp HHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred HHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 4666678999999998742 235778899999988865 6666766653
No 180
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=58.41 E-value=31 Score=24.43 Aligned_cols=58 Identities=14% Similarity=0.241 Sum_probs=40.9
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
++||+.. +-....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 46 ~V~nLp~---~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 113 (139)
T 1u6f_A 46 MVNYIPT---TVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKR 113 (139)
T ss_dssp EEESCST---TCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCE
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 4677742 223457888899999998887631 346778999999999975 555555554
No 181
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=58.20 E-value=39 Score=22.64 Aligned_cols=52 Identities=13% Similarity=0.207 Sum_probs=38.4
Q ss_pred CCccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---------CeeEEEeCCHHHHHHHHHh
Q 022341 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT 93 (298)
Q Consensus 39 ~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvi~~p~~i~evl~~ 93 (298)
..-++|||..- -....+.++..+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 16 ~~l~V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 76 (111)
T 1x4h_A 16 KTVFIRNLSFD---SEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 76 (111)
T ss_dssp CCEEEESCCTT---CCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCCC---CCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHH
Confidence 34567888532 2345688888999999888864 2346778899999999975
No 182
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=58.11 E-value=24 Score=24.48 Aligned_cols=65 Identities=14% Similarity=0.182 Sum_probs=44.4
Q ss_pred CCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---CeeEEEeCCHHHHHHHHHh---cCccccCCCC
Q 022341 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---QRNLVVVSSPDHAKEVLHT---QGVEFGSRTR 103 (298)
Q Consensus 37 P~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvi~~p~~i~evl~~---~~~~f~~r~~ 103 (298)
|...-++|||..- .-....+.++..+||+|-.+++. +.-.|-..+++.|+.++.. +...+.+|+.
T Consensus 24 p~~~l~V~NLp~~--~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 24 LGRVIHLSNLPHS--GYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp CCCEEEEESCCCS--SCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred CCCEEEEeCCCCc--cCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3345567999642 01335688888999999888875 3457778899999988863 3334566663
No 183
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=58.06 E-value=25 Score=23.23 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=39.9
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---CeeEEEeCCHHHHHHHHHh-cCccccCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---QRNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvi~~p~~i~evl~~-~~~~f~~r 101 (298)
-++||+.. +-....+.++..+||.|..+++. +.-.|-..+.+.+..++.. ++..+.+|
T Consensus 30 l~V~nlp~---~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 91 (101)
T 2la4_A 30 AYIGNIPH---FATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGR 91 (101)
T ss_dssp EEEESCCT---TCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred EEEcCCCc---ccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 35688853 22346788889999999888874 3456777899999988864 44444443
No 184
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=57.81 E-value=24 Score=23.89 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=41.3
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeC-CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG-QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g-~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++||+..-. -....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+++
T Consensus 30 l~V~nl~~~~--~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 91 (110)
T 1wf1_A 30 VFIGNLNTAL--VKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQT 91 (110)
T ss_dssp EEECSCCCSS--CCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCccc--CCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 3678885320 2346788889999999888774 3456777889999998854 555555444
No 185
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=57.66 E-value=16 Score=23.77 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=38.5
Q ss_pred cccccccCCCCcchHHHHHHHHHhC--CeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYG--DVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG--~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
++|||.. +-....+.++..+|| +|..+++.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 5 ~V~nL~~---~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 74 (90)
T 3p5t_L 5 YIGNLTW---WTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN 74 (90)
T ss_dssp EEESCCT---TCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCC
T ss_pred EEeCCCC---CCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEE
Confidence 4677743 223467888899999 887666421 246677899999999853 555666665
No 186
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=57.17 E-value=42 Score=22.65 Aligned_cols=61 Identities=21% Similarity=0.280 Sum_probs=42.6
Q ss_pred CCccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---CeeEEEeCCHHHHHHHHHh---cCccccCCC
Q 022341 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---QRNLVVVSSPDHAKEVLHT---QGVEFGSRT 102 (298)
Q Consensus 39 ~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvi~~p~~i~evl~~---~~~~f~~r~ 102 (298)
..-++|||.. +-....+.++..+||.|-.+.+. +.-.|-..+.+.++.++.. +...+.+|+
T Consensus 16 ~~l~V~nLp~---~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 16 PVVHVRGLCE---SVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp SEEEEESCCS---SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 3456799853 22346788999999999988864 3567788899999998863 223355555
No 187
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=57.04 E-value=31 Score=23.91 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=40.7
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeC--------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG--------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
++||+.. +-....+.++..+||+|..+++. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 39 ~V~nlp~---~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 105 (124)
T 2kt5_A 39 LVSNLDF---GVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 105 (124)
T ss_dssp EEESCCS---SCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 4677742 22345688888999999887763 2457778999999999874 555555554
No 188
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.94 E-value=38 Score=22.13 Aligned_cols=58 Identities=24% Similarity=0.395 Sum_probs=38.9
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCe-EEEeeC---CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDV-LLLRMG---QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i-~~~~~g---~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
++|||.. +-....+.++..+||+| ..+..+ +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 23 ~V~nL~~---~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (97)
T 2e5j_A 23 YVGNLPR---DARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT 85 (97)
T ss_dssp EEECCCT---TCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred EEeCCCC---cCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 5688842 22345788889999987 333332 4557778899999999865 555555554
No 189
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=56.92 E-value=20 Score=25.04 Aligned_cols=67 Identities=21% Similarity=0.241 Sum_probs=44.3
Q ss_pred CCCCccccccccCCC--CcchHHHHHHHHHhCCeEEEeeCC-------------eeEEEeCCHHHHHHHHHh-cCccccC
Q 022341 37 PLPVPVFGNWLQVGD--DLNHRNLSDLAKKYGDVLLLRMGQ-------------RNLVVVSSPDHAKEVLHT-QGVEFGS 100 (298)
Q Consensus 37 P~~~PiiGnl~~l~~--~~~~~~~~~~~~~yG~i~~~~~g~-------------~~~vvi~~p~~i~evl~~-~~~~f~~ 100 (298)
|...-+|.|+..-.. +....-+.+...+||+|..+++.. .-.|-..+++.|+.+... ++..|.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 455667888864211 113445777788999998887542 234667799999888865 6667777
Q ss_pred CCC
Q 022341 101 RTR 103 (298)
Q Consensus 101 r~~ 103 (298)
|+.
T Consensus 99 R~i 101 (118)
T 3ue2_A 99 RKV 101 (118)
T ss_dssp EEC
T ss_pred cEE
Confidence 663
No 190
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=56.92 E-value=23 Score=24.10 Aligned_cols=60 Identities=15% Similarity=0.258 Sum_probs=41.1
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
--++|||..- -....+.++..+||+|..+++.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 27 ~l~V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 96 (115)
T 2cpz_A 27 NLFIYHLPQE---FGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKR 96 (115)
T ss_dssp CEEEESCCSS---CCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3467888532 24467888899999997776532 346778899999999965 555554444
No 191
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.88 E-value=30 Score=23.28 Aligned_cols=61 Identities=10% Similarity=0.146 Sum_probs=42.1
Q ss_pred CCccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---CeeEEEeCCHHHHHHHHHh---cCccccCCC
Q 022341 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---QRNLVVVSSPDHAKEVLHT---QGVEFGSRT 102 (298)
Q Consensus 39 ~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvi~~p~~i~evl~~---~~~~f~~r~ 102 (298)
..-++|||.. +-....+.++..+||.|..+.+. +.-.|-..+.+.++.++.. +...+.+|+
T Consensus 16 ~~l~V~nLp~---~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 16 RVLHIRKLPG---EVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp SEEEEESCCT---TCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 3456799863 22345688888999999888764 4567788899999988863 233344554
No 192
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=56.32 E-value=26 Score=23.09 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=42.4
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
--++||+..- -....+.++..+||+|..+++. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~~---~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 17 RLFVGNLPPD---ITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp EEEEESCCTT---CCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred EEEEeCCCCC---CCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 3467888532 2345688888999999888775 3456777889999998855 555565555
No 193
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.92 E-value=36 Score=23.66 Aligned_cols=55 Identities=18% Similarity=0.076 Sum_probs=40.0
Q ss_pred CCCCCccc--cccccCCCCcchHHHHHHHHHhCCeEEEeeCC---eeEEEeCCHHHHHHHHHh
Q 022341 36 GPLPVPVF--GNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---RNLVVVSSPDHAKEVLHT 93 (298)
Q Consensus 36 GP~~~Pii--Gnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---~~~vvi~~p~~i~evl~~ 93 (298)
.|...-++ ||+..=. ....+.+...+||.|-.+++.. .-.|-..+++.+++++..
T Consensus 23 ~pt~~L~V~Ng~L~~~~---te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~ 82 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGV---SRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT 82 (114)
T ss_dssp SCCSEEEEETCTGGGTC---CHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCC---CHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 34445677 7685321 3467889999999999888753 456778899999999875
No 194
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.44 E-value=16 Score=25.04 Aligned_cols=68 Identities=24% Similarity=0.257 Sum_probs=44.1
Q ss_pred CCCCCCccccccccCCC---Cc-----chHHHHHHHHHhCCeEEEeeC-----CeeEEEeCCHHHHHHHHHh-cCccccC
Q 022341 35 PGPLPVPVFGNWLQVGD---DL-----NHRNLSDLAKKYGDVLLLRMG-----QRNLVVVSSPDHAKEVLHT-QGVEFGS 100 (298)
Q Consensus 35 pGP~~~PiiGnl~~l~~---~~-----~~~~~~~~~~~yG~i~~~~~g-----~~~~vvi~~p~~i~evl~~-~~~~f~~ 100 (298)
|.|...-++.|++.-.. +. ....+.+...+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 55555667788854321 10 123577778899999887653 3456777899999998865 4455555
Q ss_pred CC
Q 022341 101 RT 102 (298)
Q Consensus 101 r~ 102 (298)
|+
T Consensus 92 r~ 93 (112)
T 2dit_A 92 RQ 93 (112)
T ss_dssp EE
T ss_pred cE
Confidence 54
No 195
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=54.74 E-value=21 Score=25.97 Aligned_cols=59 Identities=15% Similarity=0.287 Sum_probs=41.2
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
-++||+.. +-....+.++..+||+|..+.+.. .-.|-..+++.+..++..++..+.+|+
T Consensus 90 l~V~nlp~---~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 157 (167)
T 2cjk_A 90 IFVGGIGP---DVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRK 157 (167)
T ss_dssp EEEEEECT---TCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSC
T ss_pred EEECCCCC---CCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeE
Confidence 35677742 224456888889999998877642 346778899999999975555555554
No 196
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=54.38 E-value=24 Score=23.44 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=39.4
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeCC----------eeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ----------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~----------~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
++||+..-. ....+.++..+|| |..+.+.. .-.|-..+.+.++.++.-++..+.+|+
T Consensus 23 ~V~nLp~~~---t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~ 89 (100)
T 2j76_E 23 FLGNLPYDV---TEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRR 89 (100)
T ss_dssp EESCCSSCC---SSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBC
T ss_pred EEeCCCCCC---CHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeE
Confidence 467774321 3346788888999 98888642 346788999999999944555555554
No 197
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.27 E-value=35 Score=23.06 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=41.7
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC--------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ--------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
--++|||..- -....+.++..+||+|..+.+.. .-.|...+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~~---~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (114)
T 2do0_A 17 TVFVANLDYK---VGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRP 85 (114)
T ss_dssp CEEEESCCTT---CCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 4467888532 24567888999999998776542 346778899999999874 555554444
No 198
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=53.78 E-value=45 Score=22.04 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=40.2
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC--------eeEEEeCCHHHHHHHHHh-cCccccC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ--------RNLVVVSSPDHAKEVLHT-QGVEFGS 100 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvi~~p~~i~evl~~-~~~~f~~ 100 (298)
--++|||.. +-....+.++..+||+|..+++.. .-.|-..+++.++.++.. ++..+.+
T Consensus 17 ~l~v~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 17 KLFVGMLNK---QQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp EEEEESCCT---TCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 346788853 223456888899999998887642 346778899999999864 4444443
No 199
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=53.50 E-value=18 Score=23.35 Aligned_cols=57 Identities=18% Similarity=0.334 Sum_probs=37.3
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
++||+.. +-....+.++..+||+|..+.+.. .-.|-..+++ +..++.. ++..+.+|+
T Consensus 5 ~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~ 71 (90)
T 2ki2_A 5 YVGNLVY---SATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRT 71 (90)
T ss_dssp EEEEECT---TSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSS
T ss_pred EECCCCC---CCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeE
Confidence 4577742 223456777788999998877642 2456778888 8888765 455555555
No 200
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.18 E-value=34 Score=23.15 Aligned_cols=61 Identities=20% Similarity=0.360 Sum_probs=40.8
Q ss_pred CCccccccccCCCCcchHHHHHHHHHhCCe----EEEee--C---CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDV----LLLRM--G---QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 39 ~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i----~~~~~--g---~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
..-++||+.. +-....+.++..+||+| ..+.. | +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 26 ~~l~V~nLp~---~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 26 KVLYLKNLSP---RVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp SEEEEECCCT---TCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 3446788853 22345678888899987 44443 2 3457788999999999975 555555555
No 201
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=52.54 E-value=16 Score=25.14 Aligned_cols=57 Identities=18% Similarity=0.353 Sum_probs=38.4
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r 101 (298)
++||+.. +-....+.++..+||+|..+++.. .-.|-..+++.++.++.. ++..+.+|
T Consensus 44 ~V~nlp~---~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 110 (118)
T 2khc_A 44 FIYHLPQ---EFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK 110 (118)
T ss_dssp EEECSCT---TCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTE
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 4677742 223456888889999998887742 346777889999998865 34344333
No 202
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=52.07 E-value=23 Score=28.83 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=44.5
Q ss_pred CCccccccccCCCCcchHHHHHHHHHhCCeEEEeeC-------CeeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG-------QRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 39 ~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g-------~~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
.--++|||.. +-....+.++..+||+|..+++. +.-.|-..+++.++.++..++..+.+|+
T Consensus 42 ~~l~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 109 (292)
T 2ghp_A 42 TTVLVKNLPK---SYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNE 109 (292)
T ss_dssp CEEEEEEECT---TCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEE
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcE
Confidence 3446788853 22456788899999999887762 3557888999999999966666666655
No 203
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=51.85 E-value=34 Score=24.29 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=41.9
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++|||.. +-....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 50 l~V~nLp~---~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 118 (135)
T 2lea_A 50 LKVDNLTY---RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 118 (135)
T ss_dssp EEEECCCS---SCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 35688842 224567888899999998888743 347788999999999964 455555554
No 204
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=51.61 E-value=23 Score=25.58 Aligned_cols=58 Identities=16% Similarity=0.337 Sum_probs=39.8
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
++||++. +-....+.++..+||+|..+++-. .-.|-..+++.++.++.. ++..+.+++
T Consensus 6 ~v~nlp~---~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 73 (167)
T 1fxl_A 6 IVNYLPQ---NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 73 (167)
T ss_dssp EEESCCT---TCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEcCCCC---CCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCce
Confidence 4577742 223456888899999998877632 346778999999999964 444444443
No 205
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=51.54 E-value=23 Score=25.59 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=40.0
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeC--------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG--------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
++||++. +-....+.++..+||+|..+++- +.-.|-..+++.++.++.. ++..+.+++
T Consensus 4 ~V~nlp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (166)
T 3md3_A 4 YVGNLDK---AITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNI 70 (166)
T ss_dssp EEEEEET---TCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EECCCCC---cCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCe
Confidence 4677742 22345688889999999888873 2357788899999999943 554454443
No 206
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=51.50 E-value=31 Score=23.34 Aligned_cols=44 Identities=14% Similarity=0.361 Sum_probs=32.9
Q ss_pred CCCCcchHHHHHHHHHhCCeEEEeeCCe-eEEEeCCHHHHHHHHH
Q 022341 49 VGDDLNHRNLSDLAKKYGDVLLLRMGQR-NLVVVSSPDHAKEVLH 92 (298)
Q Consensus 49 l~~~~~~~~~~~~~~~yG~i~~~~~g~~-~~vvi~~p~~i~evl~ 92 (298)
|+++-...-+.++...||.+.--|+-.. -.+++++|+.+++++.
T Consensus 23 FP~ewKt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 23 FPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CCTTCCHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHH
T ss_pred CChhhhhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHH
Confidence 3443223457888899998877788754 4678999999999996
No 207
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.38 E-value=23 Score=23.13 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=40.5
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEE-eeCC---------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLL-RMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~-~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
--++||+..- -....+.++..+||+|..+ ++.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 7 ~l~V~nLp~~---~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (96)
T 1x5t_A 7 GIFIGNLDPE---IDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 77 (96)
T ss_dssp EEEEECCCTT---CCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEE
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3457888532 2346788889999998666 5432 446788999999999974 444454444
No 208
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.29 E-value=45 Score=23.28 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=42.7
Q ss_pred CCccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---CeeEEEeCCHHHHHHHHHh---cCccccCCC
Q 022341 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---QRNLVVVSSPDHAKEVLHT---QGVEFGSRT 102 (298)
Q Consensus 39 ~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvi~~p~~i~evl~~---~~~~f~~r~ 102 (298)
..-++|||..- -....+.++..+||.|-.+++. +.-.|-..+.+.|..++.. +...+.+|+
T Consensus 32 ~~LfVgNLp~~---vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 32 RVIHIRKLPID---VTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp SEEEEESCCTT---CCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred CEEEEeCCCCC---CCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 34567998632 2345688999999999888765 4567788899999988863 223455555
No 209
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=51.17 E-value=53 Score=22.11 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=40.0
Q ss_pred CCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---CeeEEEeCCHHHHHHHHHh
Q 022341 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---QRNLVVVSSPDHAKEVLHT 93 (298)
Q Consensus 37 P~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvi~~p~~i~evl~~ 93 (298)
|...-.+|||..- -....+.++..+||+|-.+.+. +.-.|-..+.+.++.++..
T Consensus 20 ps~~l~V~NLp~~---~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ 76 (100)
T 3r27_A 20 ASPVVHIRGLIDG---VVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNY 76 (100)
T ss_dssp CCSEEEEESCCTT---CCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCC---CCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHH
Confidence 3345567999532 1345688999999999888763 5678888899999998864
No 210
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=50.68 E-value=21 Score=26.83 Aligned_cols=58 Identities=14% Similarity=0.277 Sum_probs=41.1
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
++||+.. +-....+.++..+||+|-.+.+.. .-.|-..+++.+..++..++..+.+|+
T Consensus 108 ~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~ 174 (196)
T 1l3k_A 108 FVGGIKE---DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN 174 (196)
T ss_dssp EEECCTT---TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEE
T ss_pred EEeCCCC---CCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEE
Confidence 5677742 224567888889999998877642 246778899999999977655555554
No 211
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.16 E-value=52 Score=21.67 Aligned_cols=59 Identities=12% Similarity=0.179 Sum_probs=40.3
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
--++|||.. +-....+.++..+||+|..+.+.. .-.|-..+++.++.++.+ ...+.+|+
T Consensus 17 ~l~v~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~ 84 (103)
T 2cqg_A 17 DLIVLGLPW---KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRW 84 (103)
T ss_dssp CEEEESCCS---SCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEE
T ss_pred EEEEEcCCC---cCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeE
Confidence 346788753 224456888899999998877632 346777899999999974 33444443
No 212
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=50.02 E-value=9.6 Score=25.47 Aligned_cols=58 Identities=10% Similarity=0.248 Sum_probs=39.5
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeC--------CeeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG--------QRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
-++||+.. +-....+.++..+||+|..+.+. +.-.|-..+++.++.++. ++..+.+++
T Consensus 12 l~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~ 77 (102)
T 2xs2_A 12 VFVGGIDV---RMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKK 77 (102)
T ss_dssp EEEECCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEE
T ss_pred EEEeCCCC---CCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEE
Confidence 35788852 22345688889999999887763 234567778888998887 544555444
No 213
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=49.79 E-value=37 Score=29.85 Aligned_cols=60 Identities=10% Similarity=0.089 Sum_probs=43.1
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
.-+||||..- -....+.++..+||+|..+.+. +.-.|...+++.|..++.. ++..+.+++
T Consensus 104 ~lfV~nL~~~---~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~ 173 (437)
T 3pgw_S 104 TLFVARVNYD---TTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRR 173 (437)
T ss_pred EEEEeCCCCC---CCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEE
Confidence 4467888532 2345788888999999888763 2457788899999999965 556666655
No 214
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.77 E-value=12 Score=24.93 Aligned_cols=60 Identities=10% Similarity=0.209 Sum_probs=40.7
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
.-++||+..- -....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~~---~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (103)
T 2cq0_A 17 TIRVTNLSED---TRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI 86 (103)
T ss_dssp EEEEESCCTT---CCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 3467888532 23456778888999998887642 346778999999999974 444444443
No 215
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=49.72 E-value=43 Score=24.25 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=43.1
Q ss_pred CCccccccccCCCCcchHHHHHHHHHhCCeEEEeeC------C---eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG------Q---RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 39 ~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g------~---~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
..-++|||.. +-....+.++..+||+|..+.+. . .-.|...+++.++.++.. ++..+.+++
T Consensus 40 ~~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 110 (156)
T 1h2v_Z 40 CTLYVGNLSF---YTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRI 110 (156)
T ss_dssp CEEEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEE
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3446788852 22346788899999999888872 1 346778999999999975 555555554
No 216
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.44 E-value=53 Score=21.25 Aligned_cols=60 Identities=25% Similarity=0.233 Sum_probs=41.4
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEe-eCC-----eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLR-MGQ-----RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~-~g~-----~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
--++||+.. +-....+.++..+||+|-.+. +.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~---~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 83 (96)
T 2e44_A 17 KLQIRNIPP---HLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFT 83 (96)
T ss_dssp CEEEEEECS---SSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred EEEEEcCCC---CCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 346788853 224567888899999998873 432 246778899999998864 555555554
No 217
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=48.13 E-value=27 Score=23.20 Aligned_cols=64 Identities=20% Similarity=0.230 Sum_probs=41.7
Q ss_pred CCCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 35 PGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 35 pGP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
+.|..--++|||..- -....+.++..+|| |..+++.. .-.|-..+++.++.++.-++..+.+|+
T Consensus 12 ~~~~~~l~V~nLp~~---~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 84 (103)
T 2dng_A 12 TEPPYTAYVGNLPFN---TVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRS 84 (103)
T ss_dssp SSSCEEEEEESCCTT---CCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred CCCCeEEEEeCCCCC---CCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeE
Confidence 333334467888532 23456888888997 87777631 346778899999999944555555544
No 218
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=47.93 E-value=46 Score=24.01 Aligned_cols=58 Identities=17% Similarity=0.288 Sum_probs=40.5
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
++||++. +-....+.++..+||+|..+++-. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 7 ~v~nlp~---~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 74 (168)
T 1b7f_A 7 IVNYLPQ---DMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKR 74 (168)
T ss_dssp EEECCCT---TCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcE
Confidence 5677742 223456888899999998887642 457778899999999963 444444443
No 219
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.63 E-value=13 Score=25.46 Aligned_cols=62 Identities=11% Similarity=0.087 Sum_probs=40.4
Q ss_pred CCCCccccccccCCCCcchHHHHHHHHHhCCe-EEEee-----C---CeeEEEeCCHHHHHHHHHhcCccccCC
Q 022341 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDV-LLLRM-----G---QRNLVVVSSPDHAKEVLHTQGVEFGSR 101 (298)
Q Consensus 37 P~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i-~~~~~-----g---~~~~vvi~~p~~i~evl~~~~~~f~~r 101 (298)
+...-++|||..- -....+.++..+||.| -.+++ | +.-.|-..+++.++.++..++..+.+|
T Consensus 14 ~~~~l~V~nLp~~---~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr 84 (114)
T 2cpy_A 14 AKVCAHITNIPFS---ITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGR 84 (114)
T ss_dssp CCCEEEEESCCTT---SCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTE
T ss_pred CccEEEEeCcCCc---CCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCe
Confidence 3334467888532 2345688888999988 33333 2 345788899999999987655444443
No 220
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.40 E-value=44 Score=22.55 Aligned_cols=59 Identities=15% Similarity=0.264 Sum_probs=40.1
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC--------eeEEEeCCHHHHHHHHHh-cCccccCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ--------RNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvi~~p~~i~evl~~-~~~~f~~r 101 (298)
--++||+..- -....+.++..+||+|..+++.. .-.|-..+++.++.++.. ++..+.++
T Consensus 27 ~l~V~nlp~~---~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~ 94 (114)
T 1x5o_A 27 NLYISNLPLS---MDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTP 94 (114)
T ss_dssp EEEEESCCTT---CCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCC
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCC
Confidence 3457888532 23456888888999998887632 346777899999999874 44445433
No 221
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=46.37 E-value=57 Score=24.44 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=36.3
Q ss_pred chHHHHHHHHHhCCeEEEeeC--------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 54 NHRNLSDLAKKYGDVLLLRMG--------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g--------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
....+.++..+||+|..+.+- +.-.|...+++.++.++.. ++..+.+++
T Consensus 101 te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~ 158 (177)
T 2f3j_A 101 SDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 158 (177)
T ss_dssp CHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSB
T ss_pred CHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 345688889999999888773 2357788899999999874 455555555
No 222
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=44.78 E-value=46 Score=25.60 Aligned_cols=60 Identities=10% Similarity=0.062 Sum_probs=43.5
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeC----CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG----QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g----~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++|||.. .+-....+.++..+||+|..+++. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 7 l~V~nL~~--~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 71 (205)
T 3tyt_A 7 LMVYGLDQ--SKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQK 71 (205)
T ss_dssp EEEECCCT--TTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCc--ccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCce
Confidence 45788851 111345788899999999999874 3568888999999999864 555555555
No 223
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=44.72 E-value=77 Score=22.10 Aligned_cols=49 Identities=12% Similarity=0.246 Sum_probs=36.1
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT 93 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~ 93 (298)
++||+.. +-....+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 67 ~v~nlp~---~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 124 (140)
T 2ku7_A 67 YVGGLAE---EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 124 (140)
T ss_dssp EEECCCT---TCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH
T ss_pred EEEeCCC---CCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 4677742 223467888899999999988732 346788899999999864
No 224
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=43.50 E-value=46 Score=24.99 Aligned_cols=59 Identities=19% Similarity=0.265 Sum_probs=42.1
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeC----CeeEEEeCCHHHHHHHHH-hcCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG----QRNLVVVSSPDHAKEVLH-TQGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g----~~~~vvi~~p~~i~evl~-~~~~~f~~r~ 102 (298)
++||+..- +-....+.++..+||+|..+++. +.-.|-..+++.++.++. -++..+.+|+
T Consensus 7 ~v~nlp~~--~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (198)
T 1qm9_A 7 LVSNLNPE--RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 70 (198)
T ss_dssp EEECCCSS--SCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCC
T ss_pred EEeCCCcc--cCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeE
Confidence 46777420 22346788889999999888875 345788889999999986 3566666665
No 225
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=43.33 E-value=46 Score=25.56 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=40.9
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeC---------CeeEEEeCCHHHHHHHHHh-cCccccCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvi~~p~~i~evl~~-~~~~f~~r 101 (298)
--++|||.. +-....+.++..+||+|..+++- +.-.|-..+++.+..++.. ++..+.+|
T Consensus 17 tlfVgnLp~---~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~ 85 (213)
T 4f02_A 17 SLYVGDLHP---DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 85 (213)
T ss_dssp EEEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCc
Confidence 346799852 22456788999999999888752 1347888999999999865 33344333
No 226
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=43.29 E-value=67 Score=22.97 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=40.3
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++||+.. .-....+.++..+||+|..+.+.. .-.|-..+++.+..++.. ++..+.+|.
T Consensus 91 l~v~nl~~---~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 159 (167)
T 1fxl_A 91 LYVSGLPK---TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 159 (167)
T ss_dssp EEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred EEECCCCC---cCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCc
Confidence 35677742 224467888899999998877632 236677899999999874 555555553
No 227
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=42.76 E-value=52 Score=22.11 Aligned_cols=44 Identities=16% Similarity=0.210 Sum_probs=31.4
Q ss_pred HHHH-HHhCCeEEEeeCC--------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 59 SDLA-KKYGDVLLLRMGQ--------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 59 ~~~~-~~yG~i~~~~~g~--------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
.+.. .+||+|-.+++.. .-.|-..+++.++.++.. ++..|.+|+
T Consensus 44 ~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 44 FTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp HHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred HHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 3344 8999999988753 235667899999988864 556666665
No 228
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.30 E-value=75 Score=21.25 Aligned_cols=47 Identities=23% Similarity=0.300 Sum_probs=35.5
Q ss_pred hHHHHHHHHHhCCeEEEeeC----CeeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 55 HRNLSDLAKKYGDVLLLRMG----QRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~g----~~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
...+.++..+||+|..+++. +.-.|...+++.+..++.. ...+.+|+
T Consensus 31 e~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~ 81 (100)
T 2d9o_A 31 KDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN-EVGLVDNP 81 (100)
T ss_dssp HHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT-CCBCSSSB
T ss_pred HHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh-cCCCCCCe
Confidence 56789999999999988874 2457788899999999876 33344454
No 229
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=41.65 E-value=43 Score=24.35 Aligned_cols=60 Identities=12% Similarity=0.270 Sum_probs=40.3
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
.-++||+.. +-....+.++..+||+|-.+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 96 ~l~v~nlp~---~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (172)
T 2g4b_A 96 KLFIGGLPN---YLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 165 (172)
T ss_dssp CEEEECCCT---TCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEE
T ss_pred EEEEEcCCC---cCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeE
Confidence 445788753 224567888889999998877632 245667889999998875 554444443
No 230
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.51 E-value=27 Score=23.64 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=40.2
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeE--------EEeeC---------CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVL--------LLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~--------~~~~g---------~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++|||.. +-....+.++..+||+|. .+.+. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 18 l~V~nLp~---~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (113)
T 2cpe_A 18 IYVQGLND---SVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSK 94 (113)
T ss_dssp EEEECCCT---TCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEcCCCC---CCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCE
Confidence 35788852 223467888899999986 34432 1347788999999999975 555555554
No 231
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.13 E-value=24 Score=24.81 Aligned_cols=59 Identities=10% Similarity=0.111 Sum_probs=38.5
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCe----EEEee-----C---CeeEEEeCCHHHHHHHHHhcCccccCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDV----LLLRM-----G---QRNLVVVSSPDHAKEVLHTQGVEFGSR 101 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i----~~~~~-----g---~~~~vvi~~p~~i~evl~~~~~~f~~r 101 (298)
.-++|||..- -....+.++..+||+| -.+++ | +.-.|...+++.++.++.+++..+.+|
T Consensus 25 ~v~V~nLp~~---~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR 95 (123)
T 2dha_A 25 IVRMRGLPFT---ATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 95 (123)
T ss_dssp EEEECSCCTT---CCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSC
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCe
Confidence 4467888532 2456788999999975 12222 2 234778889999999997655544444
No 232
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=41.06 E-value=56 Score=23.51 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=38.9
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGS 100 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~ 100 (298)
-+++|+.. +-....+.++..+||+|-.+.+.. .-.|-..+++.+..++.. ++..+.+
T Consensus 92 l~v~nl~~---~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 92 LYVTNLPR---TITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp EEEESCCT---TCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred EEEeCCCC---CCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 35677752 224567888889999998777532 236677899999999874 4444544
No 233
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=40.95 E-value=75 Score=20.91 Aligned_cols=50 Identities=14% Similarity=0.283 Sum_probs=37.1
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT 93 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~ 93 (298)
-++||+.. +-....+.++..+||+|..+++.. .-.|-..+++.++.++..
T Consensus 16 l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (106)
T 2dgp_A 16 LFIGQIPR---NLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 74 (106)
T ss_dssp EEEESCCT---TCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 45788852 224467888999999998888643 346778899999999864
No 234
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=40.88 E-value=49 Score=23.33 Aligned_cols=59 Identities=10% Similarity=0.124 Sum_probs=40.8
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeE--EEeeC--------CeeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVL--LLRMG--------QRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~--~~~~g--------~~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
.-++|||..- -....+.++..+| .|. .+++. +.-.|-..+++.++.++..++..+.+|+
T Consensus 44 ~lfVgnLp~~---~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~ 112 (126)
T 2hgm_A 44 FVRLRGLPFG---CTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 112 (126)
T ss_dssp EEEEECCCTT---CCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBC
T ss_pred EEEEeCCCCC---CCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEE
Confidence 3467888532 2346688888889 566 66653 3457888999999999977665565554
No 235
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.85 E-value=22 Score=23.88 Aligned_cols=60 Identities=5% Similarity=0.027 Sum_probs=40.8
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeC--------CeeEEEeCCHHHHHHHHHhcCccccCCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG--------QRNLVVVSSPDHAKEVLHTQGVEFGSRTR 103 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~vvi~~p~~i~evl~~~~~~f~~r~~ 103 (298)
.-++|||..- -....+.++..+||.+ .+++. +.-.|-..+++.++.++..+...+.+|..
T Consensus 17 ~l~V~nLp~~---~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 84 (102)
T 1wez_A 17 CVHMRGLPYR---ATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYV 84 (102)
T ss_dssp EEEEESCCTT---CCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCC
T ss_pred EEEEeCCCCC---CCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEE
Confidence 3457888532 2345678888889965 65542 13467788999999999766667777753
No 236
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=40.11 E-value=29 Score=22.61 Aligned_cols=49 Identities=10% Similarity=0.097 Sum_probs=34.4
Q ss_pred cccccccCCCCcchHHHHHHHHHhC-CeEEEeeCC---------eeEEEeCCHHHHHHHHHh
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYG-DVLLLRMGQ---------RNLVVVSSPDHAKEVLHT 93 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG-~i~~~~~g~---------~~~vvi~~p~~i~evl~~ 93 (298)
++|||+ .+-....+.++..+|| +|-.+++.. .-.|-..+++.|+.++..
T Consensus 5 ~v~nLp---~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~ 63 (91)
T 2lxi_A 5 MLRMLP---QAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEA 63 (91)
T ss_dssp EEETCC---SSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHT
T ss_pred EEeCCC---CCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHh
Confidence 456664 2224567888899999 677766532 246778999999999864
No 237
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.25 E-value=64 Score=21.41 Aligned_cols=46 Identities=28% Similarity=0.385 Sum_probs=33.3
Q ss_pred HHHHHHHHhCCeEEEeeC-CeeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 57 NLSDLAKKYGDVLLLRMG-QRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 57 ~~~~~~~~yG~i~~~~~g-~~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
.+.+...+||.|..+++- .+-.|...|.+.+..++.-++..+.+|.
T Consensus 31 ~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 31 ELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp HHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred HHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHhcCCeEeCCeE
Confidence 455666789999999864 5567777899998888875655555444
No 238
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=38.22 E-value=63 Score=24.47 Aligned_cols=58 Identities=9% Similarity=0.271 Sum_probs=40.7
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
+++|+.. +-....+.++..+||+|..+.+.. .-.|-..+++.+..++.. ++..+.+|+
T Consensus 129 ~v~nlp~---~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 196 (216)
T 2qfj_A 129 YVASVHQ---DLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 196 (216)
T ss_dssp EEECCCT---TCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSB
T ss_pred EEeCCCC---cCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcE
Confidence 4566642 223567888889999998887642 236778899999999975 555666655
No 239
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=37.61 E-value=61 Score=24.86 Aligned_cols=58 Identities=16% Similarity=0.304 Sum_probs=39.8
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC-------eeEEEeCCHHHHHHHHHh-cCccccCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ-------RNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~-------~~~vvi~~p~~i~evl~~-~~~~f~~r 101 (298)
-++||+.. +-....+.++..+||+|..+.+-. .-.|-..+++.++.++.+ ++..+.+|
T Consensus 106 l~v~nl~~---~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~ 171 (213)
T 4f02_A 106 IFIKNLDK---SIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 171 (213)
T ss_dssp EEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred ceECCccc---ccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 35677743 224567889999999998877631 236778899999999865 44444443
No 240
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=37.06 E-value=42 Score=24.16 Aligned_cols=60 Identities=5% Similarity=0.020 Sum_probs=42.3
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC--------eeEEEeCCHHHHHHHHHhcCccccCCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ--------RNLVVVSSPDHAKEVLHTQGVEFGSRTR 103 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvi~~p~~i~evl~~~~~~f~~r~~ 103 (298)
.-++|||..- -....+.++..+|| +..+++.. .-.|...+++.++.++..++..+.+|+.
T Consensus 48 ~lfV~nLp~~---~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i 115 (139)
T 2hgn_A 48 CVHMRGLPYK---ATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYI 115 (139)
T ss_dssp CEECCSCCTT---CCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCC
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEE
Confidence 3467888532 24567889999999 54766542 3577888999999999666666777753
No 241
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.50 E-value=35 Score=21.77 Aligned_cols=47 Identities=19% Similarity=0.334 Sum_probs=34.2
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeC----CeeEEEeCCHHHHHHH
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG----QRNLVVVSSPDHAKEV 90 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g----~~~~vvi~~p~~i~ev 90 (298)
-++||+.. +-....+.++..+||+|-.+++. +.-.|-..+++.++.+
T Consensus 8 l~V~nLp~---~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 8 VFVGRCTG---DMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp EEEESCCS---SSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT
T ss_pred EEEeCCCC---CCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH
Confidence 35688853 22345688888999999888874 3457788899988764
No 242
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=36.32 E-value=1.1e+02 Score=24.38 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=30.9
Q ss_pred chHHHHHHHHHhCCeEEEeeCC----eeEEEeCCHHHHHHHHHh
Q 022341 54 NHRNLSDLAKKYGDVLLLRMGQ----RNLVVVSSPDHAKEVLHT 93 (298)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g~----~~~vvi~~p~~i~evl~~ 93 (298)
....+.++..+||+|..+++.. .-.|-..+.+.+..++..
T Consensus 220 ~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~ 263 (282)
T 3pgw_A 220 NELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDA 263 (282)
T ss_pred CHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHH
Confidence 3457888899999998887742 456677889999998864
No 243
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=34.61 E-value=65 Score=21.48 Aligned_cols=60 Identities=8% Similarity=0.012 Sum_probs=40.2
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCC---eEEEeeC--------CeeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGD---VLLLRMG--------QRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~---i~~~~~g--------~~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
.-++|||..-. ....+.++..+||. |..+.+. +.-.|-..+++.++.++..++..+.+|+
T Consensus 13 ~l~V~nLp~~~---te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (107)
T 2lmi_A 13 LIRAQGLPWSC---TMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRY 83 (107)
T ss_dssp EEEEECCCSSC---CSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSC
T ss_pred EEEEeCCCCCC---CHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeE
Confidence 34678885332 34567888888887 6555543 2457888999999999975555554444
No 244
>1b35_D CRPV, protein (cricket paralysis virus, VP4); insect picorna-like virus, icosahedral virus; 2.40A {Cricket paralysis virus} SCOP: b.121.4.1
Probab=34.54 E-value=24 Score=20.25 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=15.5
Q ss_pred CCccccccccCCCCcchHHHHHHHHHhC
Q 022341 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYG 66 (298)
Q Consensus 39 ~~PiiGnl~~l~~~~~~~~~~~~~~~yG 66 (298)
..|++||++.-+.= .......+++-+|
T Consensus 30 ~ipilgn~fs~paw-isa~~~~~~k~~g 56 (57)
T 1b35_D 30 HIPVLGNIFSTPAW-ISAKAADLAKLFG 56 (57)
T ss_dssp CCCCSCCSSSSCTT-CCCCHHHHHHHTT
T ss_pred ccccccccccchHH-HHHHHHHHHHHhC
Confidence 48999999743210 1123556666555
No 245
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=33.97 E-value=19 Score=23.48 Aligned_cols=59 Identities=19% Similarity=0.142 Sum_probs=37.7
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEee------C---CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRM------G---QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~------g---~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++||+.. +-....+.++..+||+|..+.+ | +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 18 l~V~nlp~---~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 86 (95)
T 2ek1_A 18 IKVQNMPF---TVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (95)
T ss_dssp EEEECCCT---TCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 35688852 2234568888899997643222 1 2346777899999999974 555555544
No 246
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.84 E-value=50 Score=22.79 Aligned_cols=60 Identities=17% Similarity=0.151 Sum_probs=37.9
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeE---EEee---C---CeeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVL---LLRM---G---QRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~---~~~~---g---~~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
.-++|||..- -....+.++..+||+|. .+.. | +.-.|-..+++.++.++..++..+.+|+
T Consensus 27 ~l~V~nLp~~---~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~ 95 (124)
T 1wel_A 27 CVYLKGLPFE---AENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRF 95 (124)
T ss_dssp EEEEECCCTT---CCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSC
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcE
Confidence 3457888532 23456888888999763 2221 2 2356778899999999975555554443
No 247
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=33.64 E-value=76 Score=22.76 Aligned_cols=49 Identities=27% Similarity=0.384 Sum_probs=36.2
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT 93 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~ 93 (298)
++|||+. +-....+.++..+||+|..+++-. .-.|-..+++.++.++.+
T Consensus 7 ~v~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 7 FIGGLNW---DTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp EECSCCT---TCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred EEeCCCC---CCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc
Confidence 4677742 224467888999999999988642 346788899999999864
No 248
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=33.48 E-value=51 Score=25.94 Aligned_cols=58 Identities=21% Similarity=0.291 Sum_probs=39.0
Q ss_pred cccccccCCCCcchHHHHHHHHHhC--CeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYG--DVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG--~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
++|||..- -....+.++..+|| .|..+++.. .-.|...+.+.++.++.. ++..+.+|.
T Consensus 72 fVgnL~~~---~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~ 141 (229)
T 3q2s_C 72 YIGNLTWW---TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN 141 (229)
T ss_dssp EEESCCTT---CCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBC
T ss_pred EEeCCCCC---CCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEE
Confidence 56777422 23467888999999 898877532 246778899999999864 334444433
No 249
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=33.45 E-value=50 Score=21.67 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=37.4
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEE-----EeeC---CeeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLL-----LRMG---QRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~-----~~~g---~~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
-++|||..- -....+.++..+||+|.. -..| +.-.|-..+++.++.++.-++..+.+|+
T Consensus 20 l~V~nLp~~---~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 86 (101)
T 1fj7_A 20 LFIGNLNPN---KSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNE 86 (101)
T ss_dssp EEEECCCTT---SCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBC
T ss_pred EEEeCCCCC---CCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcE
Confidence 357888532 234567788888886533 1122 3456788999999999975555555544
No 250
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=32.79 E-value=91 Score=22.45 Aligned_cols=50 Identities=10% Similarity=0.188 Sum_probs=36.3
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC--------eeEEEeCCHHHHHHHHHh
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ--------RNLVVVSSPDHAKEVLHT 93 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvi~~p~~i~evl~~ 93 (298)
-++||+.. +-....+.++..+||+|-.+.+.. .-.|-..+++.++.++..
T Consensus 98 l~v~nl~~---~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 98 LFIGMISK---KCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp EEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEcCCCC---cCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHH
Confidence 45677642 224466888899999998877642 247788999999999865
No 251
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=32.72 E-value=93 Score=21.78 Aligned_cols=55 Identities=16% Similarity=0.108 Sum_probs=38.7
Q ss_pred ccccccCCCCcchHHHHHHHHHhCCeEEEeeC---C-eeEEEeCCHHHHHHHHHh-cCccccC
Q 022341 43 FGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---Q-RNLVVVSSPDHAKEVLHT-QGVEFGS 100 (298)
Q Consensus 43 iGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---~-~~~vvi~~p~~i~evl~~-~~~~f~~ 100 (298)
+||+..= -....+.++..+||.|-.+++. + +-.|-..+++.|..++.. ++..+.+
T Consensus 30 V~NL~~~---vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g 89 (124)
T 2e5i_A 30 IQNPLYP---ITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYA 89 (124)
T ss_dssp EESCCSC---CCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBT
T ss_pred EcCcCCC---CCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 6888522 1345788999999999777653 3 367788899988888864 5555544
No 252
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=32.30 E-value=70 Score=18.00 Aligned_cols=6 Identities=0% Similarity=0.218 Sum_probs=2.3
Q ss_pred HHHhhc
Q 022341 22 TVSKLR 27 (298)
Q Consensus 22 ~~~~~~ 27 (298)
++++++
T Consensus 34 ~~RRR~ 39 (44)
T 2jwa_A 34 LIKRRQ 39 (44)
T ss_dssp HHHHHC
T ss_pred heehhh
Confidence 334433
No 253
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=31.24 E-value=94 Score=22.37 Aligned_cols=58 Identities=17% Similarity=0.309 Sum_probs=39.0
Q ss_pred cccccccCCCCcchHHHHHHHHHh----C-------CeEEEeeC---CeeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKY----G-------DVLLLRMG---QRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~y----G-------~i~~~~~g---~~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
++||++. +-....+.++..+| | +|...+.+ +.-.|-..+++.++.++.-++..+.+|+
T Consensus 8 ~V~nLp~---~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 79 (172)
T 2g4b_A 8 YVGNIPF---GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS 79 (172)
T ss_dssp EEESCCT---TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred EEcCCCc---ccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCce
Confidence 4677742 22345667777777 7 78887775 4557888999999999944555555544
No 254
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.07 E-value=63 Score=21.96 Aligned_cols=57 Identities=16% Similarity=0.081 Sum_probs=39.1
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeC--------CeeEEEeCCHHHHHHHHHhcCccccCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG--------QRNLVVVSSPDHAKEVLHTQGVEFGSR 101 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~vvi~~p~~i~evl~~~~~~f~~r 101 (298)
-++|||..- -....+.++..+| .|..+++. +.-.|-..+++.++.++..++..+.+|
T Consensus 19 v~V~nLp~~---~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr 83 (109)
T 2dnn_A 19 VSVHGMPFS---AMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQR 83 (109)
T ss_dssp EEEECCCSS---CCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTE
T ss_pred EEEeCCCCC---CCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCe
Confidence 356888532 2345688888888 67666653 245888899999999996555555444
No 255
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.79 E-value=74 Score=21.32 Aligned_cols=67 Identities=25% Similarity=0.387 Sum_probs=42.6
Q ss_pred CCCCCCcccccccc--------CCCCcchHHHHHHHHHhCCeEEEee-CCeeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 35 PGPLPVPVFGNWLQ--------VGDDLNHRNLSDLAKKYGDVLLLRM-GQRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 35 pGP~~~PiiGnl~~--------l~~~~~~~~~~~~~~~yG~i~~~~~-g~~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
-|||.--++=++.. +.. .....+.+...+||.+..+++ ..+-.|...|.+.+..++.-++..+.+|.
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~-~l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~ldG~~v~Gr~ 86 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPE-DLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLDVDGMKVKGRA 86 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCH-HHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHHGGGSEETTEE
T ss_pred cCCCCCeEEEEecCCcccccccCCH-HHHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHhcCCeeeCCeE
Confidence 47877666555421 111 112345566677999988886 45667777899999888876655555543
No 256
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=30.78 E-value=1.1e+02 Score=22.06 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=35.3
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeC-----------CeeEEEeCCHHHHHHHHHh
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG-----------QRNLVVVSSPDHAKEVLHT 93 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g-----------~~~~vvi~~p~~i~evl~~ 93 (298)
++|||+. +-....+.++..+||+|..+++- +.-.|-..+++.++.++..
T Consensus 7 ~V~nLp~---~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 66 (175)
T 3nmr_A 7 FVGQVPR---TWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNA 66 (175)
T ss_dssp EEESCCT---TCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4677742 22345688889999999887653 2346788999999999864
No 257
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.53 E-value=53 Score=21.54 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=40.5
Q ss_pred CCCCCccccccccCCCCcchHHHHHHHHHhCCeEEEee--C---CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 36 GPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRM--G---QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 36 GP~~~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~--g---~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
.|...-++|||..- -....+.++..+||+|....- | +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 13 ~~~~~l~V~nLp~~---~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 82 (101)
T 2fc9_A 13 GESKTLVLSNLSYS---ATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA 82 (101)
T ss_dssp CCCSEEEEESCCTT---CCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEE
T ss_pred CCCCEEEEeCCCCC---CCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeE
Confidence 33344567888532 234567888888998844332 1 2456788999999999974 444444443
No 258
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=29.59 E-value=76 Score=22.61 Aligned_cols=59 Identities=19% Similarity=0.290 Sum_probs=39.9
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++||+.. +-....+.++..+||+|..+.+.. .-.|-..+++.+..++.. ++..+.+|+
T Consensus 90 l~v~nl~~---~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 90 LFVGDLNV---NVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp EEEESCCT---TCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EEECCCCC---CCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 45677742 224467888889999998877631 246777899999999974 444444443
No 259
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.18 E-value=94 Score=19.72 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=38.9
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeCC--------eeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ--------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
.-++||+..- -....+.++..+| +|..+.+.. .-.|...+++.++.++.-++..+.+|+
T Consensus 12 ~l~v~nLp~~---~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~ 78 (91)
T 2dgw_A 12 TVKLRGAPFN---VTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRY 78 (91)
T ss_dssp EEEEECCCSS---CCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEE
T ss_pred EEEEECCCCC---CCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcE
Confidence 3467888532 2345678888888 776665521 346778899999999975555555443
No 260
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=28.68 E-value=30 Score=24.80 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=38.0
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCC---eEEEee-----C---CeeEEEeCCHHHHHHHHHhcCccccCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGD---VLLLRM-----G---QRNLVVVSSPDHAKEVLHTQGVEFGSR 101 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~---i~~~~~-----g---~~~~vvi~~p~~i~evl~~~~~~f~~r 101 (298)
-++|||..- -....+.++..+||. |-.+++ | +.-.|-..+++.++.++..++..+.+|
T Consensus 47 lfVgnLp~~---~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr 115 (136)
T 2hgl_A 47 VKLRGLPWS---CSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHR 115 (136)
T ss_dssp EEEESCCTT---CCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSS
T ss_pred EEEeCCCCC---CCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCE
Confidence 357888532 244668888899998 433333 2 234788899999999997544444444
No 261
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=27.38 E-value=71 Score=25.41 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=42.0
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeC---CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
++||+.. +-....+.++..+||+|..+.++ +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 26 ~V~nLp~---~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~ 87 (261)
T 3sde_A 26 FVGNLPT---DITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRP 87 (261)
T ss_dssp EEESCCT---TCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEECCCC---CCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCce
Confidence 5788842 22346788888999999888876 3557788999999999863 555555554
No 262
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=26.93 E-value=75 Score=23.60 Aligned_cols=58 Identities=12% Similarity=0.302 Sum_probs=38.5
Q ss_pred cccccccCCCCcchHHHHHHHHHhCCeEEEeeCC---------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
++||+.. +-....+.++..+||+|..+.+.. .-.|-..+++.+..++.. ++..+.+|+
T Consensus 118 ~v~nl~~---~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 185 (198)
T 2yh0_A 118 FIGGLPN---YLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 185 (198)
T ss_dssp EEECCCT---TCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCC---CCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 4566642 223456888889999998877642 235677888999988875 555554443
No 263
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.24 E-value=30 Score=23.85 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=38.2
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCC---eEEEee-----C---CeeEEEeCCHHHHHHHHHhcCccccCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGD---VLLLRM-----G---QRNLVVVSSPDHAKEVLHTQGVEFGSR 101 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~---i~~~~~-----g---~~~~vvi~~p~~i~evl~~~~~~f~~r 101 (298)
-++|||..-. ....+.++..+||. |..+++ | +.-.|-..+++.++.++..++..+.+|
T Consensus 20 l~V~nLp~~~---te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr 88 (118)
T 2db1_A 20 VKLRGLPWSC---SIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHR 88 (118)
T ss_dssp EEEESCCTTC---CHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTE
T ss_pred EEEeCCCCCC---CHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCe
Confidence 3578885322 34568888888997 544443 2 145788899999999997555444444
No 264
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=24.55 E-value=1.2e+02 Score=24.16 Aligned_cols=64 Identities=16% Similarity=0.255 Sum_probs=41.7
Q ss_pred CCccccccccCCCC-cchHHHHHHHHHhCCeEEEeeCC------eeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 39 PVPVFGNWLQVGDD-LNHRNLSDLAKKYGDVLLLRMGQ------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 39 ~~PiiGnl~~l~~~-~~~~~~~~~~~~yG~i~~~~~g~------~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
..-++|||..-..+ .....+.++..+||+|..+++.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 10 ~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 10 HTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34567998632211 11122568889999998887532 557888999999999854 555555554
No 265
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=22.21 E-value=1.2e+02 Score=22.42 Aligned_cols=58 Identities=17% Similarity=0.309 Sum_probs=39.0
Q ss_pred cccccccCCCCcchHHHHHHHHHh----C-------CeEEEeeC---CeeEEEeCCHHHHHHHHHhcCccccCCC
Q 022341 42 VFGNWLQVGDDLNHRNLSDLAKKY----G-------DVLLLRMG---QRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (298)
Q Consensus 42 iiGnl~~l~~~~~~~~~~~~~~~y----G-------~i~~~~~g---~~~~vvi~~p~~i~evl~~~~~~f~~r~ 102 (298)
++|||.. +-....+.++..+| | +|...+.+ +.-.|-..+++.++.++.-++..+.+|+
T Consensus 8 ~V~nLp~---~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~ 79 (198)
T 2yh0_A 8 YVGNIPF---GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS 79 (198)
T ss_dssp EEESCCT---TCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEE
T ss_pred EEcCCCC---CCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCce
Confidence 5677742 21345577777777 6 77777775 3557888999999999944555555544
No 266
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.76 E-value=40 Score=21.95 Aligned_cols=59 Identities=20% Similarity=0.207 Sum_probs=37.1
Q ss_pred ccccccccCCCCcchHHHHHHHHHhCCeEE---Eee---C---CeeEEEeCCHHHHHHHHHh-cCccccCCC
Q 022341 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLL---LRM---G---QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (298)
Q Consensus 41 PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~---~~~---g---~~~~vvi~~p~~i~evl~~-~~~~f~~r~ 102 (298)
-++|||.. +-....+.++..+||+|.. +.- | +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 18 l~v~nLp~---~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 86 (98)
T 2cqp_A 18 IKVQNMPF---TVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (98)
T ss_dssp EEEESCCT---TCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEE
T ss_pred EEEeCCCC---CCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 35688842 2244568888899998742 211 1 2346778899999999965 444454444
No 267
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.38 E-value=1.1e+02 Score=20.58 Aligned_cols=50 Identities=6% Similarity=0.266 Sum_probs=34.7
Q ss_pred CccccccccCCCCcchHHHHHHHHHhCCeEEEeeC------------CeeEEEeCCHHHHHHHHHh
Q 022341 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG------------QRNLVVVSSPDHAKEVLHT 93 (298)
Q Consensus 40 ~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~g------------~~~~vvi~~p~~i~evl~~ 93 (298)
--++|||.. +-....+.++..+||+|. ..+. +.-.|...+++.++.++..
T Consensus 10 ~lfVgnLp~---~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~ 71 (114)
T 2dnl_A 10 KVFVGGLPP---DIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDA 71 (114)
T ss_dssp CEEEECCCT---TCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHH
T ss_pred EEEEcCCCC---CCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHh
Confidence 446788853 223467888889999987 4332 2346777899999998864
No 268
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.05 E-value=2.3e+02 Score=19.74 Aligned_cols=57 Identities=12% Similarity=0.183 Sum_probs=37.4
Q ss_pred CCCCC-CccccccccCCCCcchHHHHHHHHHhCCeEEEee--CCe-eEEEeCC-HHHHHHHHHh
Q 022341 35 PGPLP-VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRM--GQR-NLVVVSS-PDHAKEVLHT 93 (298)
Q Consensus 35 pGP~~-~PiiGnl~~l~~~~~~~~~~~~~~~yG~i~~~~~--g~~-~~vvi~~-p~~i~evl~~ 93 (298)
.-|+| +-.+||+..-. -....+.+...+||+|-.+++ |.. -.|-..+ ++.+++++.+
T Consensus 14 ~~~~G~il~v~~l~~~~--~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ 75 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQ--TCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKD 75 (121)
T ss_dssp SCCCCCEEEEEESCCSS--CCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHH
T ss_pred cccCCeEEEEecCCCCc--CCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHH
Confidence 34444 34568775431 134578888889999998886 433 3666777 6778887765
Done!