Query 022342
Match_columns 298
No_of_seqs 256 out of 1932
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 02:48:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022342.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022342hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0035 Upp Uracil phosphoribo 100.0 2.1E-68 4.6E-73 467.7 22.6 204 91-297 2-210 (210)
2 PF14681 UPRTase: Uracil phosp 100.0 4.5E-64 9.7E-69 447.1 21.6 201 95-296 1-207 (207)
3 PLN02541 uracil phosphoribosyl 100.0 4.2E-62 9.1E-67 442.1 23.8 203 93-297 34-244 (244)
4 TIGR01091 upp uracil phosphori 100.0 5.4E-59 1.2E-63 414.5 25.1 202 92-297 1-207 (207)
5 PRK00129 upp uracil phosphorib 100.0 1.1E-57 2.3E-62 406.7 25.1 202 92-297 3-209 (209)
6 KOG4203 Armadillo/beta-Catenin 100.0 2.6E-55 5.6E-60 431.1 9.9 296 1-297 174-473 (473)
7 KOG1017 Predicted uracil phosp 100.0 1.1E-42 2.5E-47 299.8 15.3 200 89-297 64-267 (267)
8 COG0572 Udk Uridine kinase [Nu 99.9 8.7E-22 1.9E-26 175.3 6.9 85 1-85 128-212 (218)
9 PTZ00301 uridine kinase; Provi 99.7 3.2E-18 7E-23 152.8 8.2 83 1-83 127-209 (210)
10 cd02029 PRK_like Phosphoribulo 99.6 4E-16 8.6E-21 143.3 5.4 61 1-62 141-201 (277)
11 PF00485 PRK: Phosphoribulokin 99.6 5.1E-16 1.1E-20 136.3 5.0 67 1-68 127-193 (194)
12 PLN02318 phosphoribulokinase/u 99.6 8.1E-16 1.8E-20 153.9 5.4 85 1-85 177-272 (656)
13 PRK15453 phosphoribulokinase; 99.5 4.9E-15 1.1E-19 137.0 5.2 61 1-62 147-207 (290)
14 PRK05480 uridine/cytidine kina 99.4 4.6E-13 9.9E-18 118.6 7.9 83 1-83 126-208 (209)
15 PLN02369 ribose-phosphate pyro 99.4 6.4E-12 1.4E-16 118.1 13.3 112 160-275 151-267 (302)
16 TIGR00235 udk uridine kinase. 99.3 3.6E-12 7.9E-17 113.0 8.2 81 1-81 126-206 (207)
17 cd02023 UMPK Uridine monophosp 99.3 3.7E-12 8E-17 111.8 7.9 79 1-79 119-197 (198)
18 cd02025 PanK Pantothenate kina 99.3 3E-12 6.5E-17 115.1 4.2 67 1-67 129-214 (220)
19 PRK03092 ribose-phosphate pyro 99.2 4.4E-10 9.4E-15 105.8 13.5 112 160-274 148-265 (304)
20 PLN02348 phosphoribulokinase 99.2 3.1E-11 6.7E-16 116.4 5.4 61 1-62 183-243 (395)
21 cd02028 UMPK_like Uridine mono 99.1 2.9E-11 6.3E-16 105.3 4.2 60 1-61 118-178 (179)
22 TIGR01203 HGPRTase hypoxanthin 99.1 7.3E-10 1.6E-14 95.6 10.8 93 161-255 27-127 (166)
23 COG1926 Predicted phosphoribos 99.0 3.5E-10 7.5E-15 99.8 6.6 77 202-282 116-192 (220)
24 cd02026 PRK Phosphoribulokinas 99.0 1.9E-10 4.2E-15 106.7 5.1 61 1-62 116-176 (273)
25 PRK05205 bifunctional pyrimidi 99.0 2.1E-09 4.6E-14 93.4 8.5 114 114-250 7-134 (176)
26 PRK07429 phosphoribulokinase; 99.0 7.5E-10 1.6E-14 105.2 5.5 62 1-63 125-186 (327)
27 PRK02812 ribose-phosphate pyro 98.9 2.2E-08 4.8E-13 95.3 11.7 105 160-270 179-289 (330)
28 TIGR00554 panK_bact pantothena 98.8 2.2E-09 4.7E-14 100.4 4.4 66 1-66 197-281 (290)
29 PRK01259 ribose-phosphate pyro 98.8 4.5E-08 9.8E-13 92.4 11.3 111 160-275 158-273 (309)
30 PRK06827 phosphoribosylpyropho 98.7 9.2E-08 2E-12 92.6 12.3 82 181-264 230-317 (382)
31 PRK05439 pantothenate kinase; 98.7 1.5E-08 3.2E-13 95.7 5.9 68 1-68 217-303 (311)
32 TIGR01251 ribP_PPkin ribose-ph 98.7 1.9E-07 4E-12 88.2 13.2 108 161-272 160-272 (308)
33 COG0462 PrsA Phosphoribosylpyr 98.6 1.3E-07 2.8E-12 88.7 9.5 91 181-275 186-279 (314)
34 PRK00934 ribose-phosphate pyro 98.6 3.8E-07 8.3E-12 85.2 11.8 54 206-261 200-255 (285)
35 PRK09162 hypoxanthine-guanine 98.5 3.4E-06 7.4E-11 73.7 14.3 117 111-252 14-137 (181)
36 PRK15423 hypoxanthine phosphor 98.5 3.7E-06 7.9E-11 73.4 14.0 118 114-254 9-134 (178)
37 PRK04923 ribose-phosphate pyro 98.5 1.5E-06 3.2E-11 82.5 11.7 97 161-261 167-268 (319)
38 PRK06696 uridine kinase; Valid 98.5 2.2E-07 4.9E-12 83.3 5.8 63 1-64 147-211 (223)
39 PF00156 Pribosyltran: Phospho 98.4 5.8E-07 1.3E-11 72.6 7.3 49 199-249 77-125 (125)
40 PF14572 Pribosyl_synth: Phosp 98.4 3.8E-07 8.2E-12 79.7 5.1 70 204-275 77-148 (184)
41 PRK02269 ribose-phosphate pyro 98.4 3.8E-06 8.1E-11 79.8 12.0 56 204-261 211-268 (320)
42 PRK08233 hypothetical protein; 98.4 1.1E-06 2.3E-11 75.4 7.3 80 1-84 98-178 (182)
43 PTZ00271 hypoxanthine-guanine 98.4 4.1E-06 8.8E-11 75.0 11.1 121 114-254 28-160 (211)
44 PRK02458 ribose-phosphate pyro 98.4 4.8E-06 1E-10 79.2 12.1 96 160-261 169-269 (323)
45 COG2065 PyrR Pyrimidine operon 98.3 5E-06 1.1E-10 70.9 10.4 121 114-250 7-135 (179)
46 PRK07199 phosphoribosylpyropho 98.3 1.5E-05 3.3E-10 75.0 13.4 54 206-261 207-262 (301)
47 PTZ00149 hypoxanthine phosphor 98.3 7.2E-06 1.6E-10 74.8 10.4 116 113-254 57-192 (241)
48 PRK00553 ribose-phosphate pyro 98.2 9.5E-06 2E-10 77.5 11.4 56 204-261 212-269 (332)
49 PLN02238 hypoxanthine phosphor 98.2 1.2E-05 2.6E-10 70.8 10.7 116 114-254 12-139 (189)
50 TIGR01090 apt adenine phosphor 98.2 4.9E-06 1.1E-10 71.8 7.5 58 207-269 106-165 (169)
51 PTZ00145 phosphoribosylpyropho 98.2 1.1E-05 2.3E-10 79.3 10.6 58 202-261 327-386 (439)
52 PRK09270 nucleoside triphospha 98.2 2.3E-06 4.9E-11 77.1 5.3 64 1-66 161-224 (229)
53 PLN02297 ribose-phosphate pyro 98.1 1.1E-05 2.4E-10 76.7 7.9 55 204-260 224-280 (326)
54 PRK02304 adenine phosphoribosy 98.0 3.1E-05 6.7E-10 67.1 9.6 51 207-259 111-163 (175)
55 PLN02293 adenine phosphoribosy 98.0 1.3E-05 2.8E-10 70.5 6.0 49 209-259 124-174 (187)
56 COG0634 Hpt Hypoxanthine-guani 97.9 0.00014 3.1E-09 62.9 10.3 93 160-254 35-135 (178)
57 PRK02277 orotate phosphoribosy 97.8 0.00013 2.9E-09 64.7 10.2 50 206-258 136-185 (200)
58 PRK00455 pyrE orotate phosphor 97.8 0.00022 4.7E-09 63.3 11.3 59 207-268 110-168 (202)
59 TIGR00336 pyrE orotate phospho 97.8 0.00011 2.4E-09 63.6 8.4 60 207-269 105-166 (173)
60 PRK13811 orotate phosphoribosy 97.7 0.00015 3.2E-09 62.8 7.6 59 207-268 101-159 (170)
61 KOG1448 Ribose-phosphate pyrop 97.7 0.00012 2.6E-09 68.0 7.3 91 203-295 207-305 (316)
62 TIGR01367 pyrE_Therm orotate p 97.7 0.0002 4.4E-09 62.9 8.3 46 208-255 103-148 (187)
63 PRK12560 adenine phosphoribosy 97.6 0.00016 3.5E-09 63.6 7.0 52 208-261 112-165 (187)
64 PRK07322 adenine phosphoribosy 97.6 6.1E-05 1.3E-09 65.7 4.1 49 207-257 117-165 (178)
65 PRK13812 orotate phosphoribosy 97.6 0.00025 5.4E-09 61.8 7.3 57 209-269 106-163 (176)
66 TIGR00201 comF comF family pro 97.5 0.00013 2.9E-09 64.0 5.5 40 207-248 149-188 (190)
67 cd02020 CMPK Cytidine monophos 97.5 0.00018 3.9E-09 59.1 5.9 62 1-62 83-146 (147)
68 PRK05793 amidophosphoribosyltr 97.5 0.00015 3.3E-09 72.3 6.3 46 200-247 343-388 (469)
69 PRK08525 amidophosphoribosyltr 97.5 0.00013 2.8E-09 72.4 5.0 66 202-271 332-400 (445)
70 KOG1712 Adenine phosphoribosyl 97.5 0.00013 2.8E-09 62.2 4.3 47 210-258 122-170 (183)
71 PRK06031 phosphoribosyltransfe 97.5 0.00049 1.1E-08 62.6 8.1 55 207-263 151-206 (233)
72 PRK08558 adenine phosphoribosy 97.4 0.00036 7.7E-09 63.7 7.0 53 208-262 174-227 (238)
73 PRK11595 DNA utilization prote 97.4 0.00025 5.3E-09 64.1 5.9 42 206-249 183-224 (227)
74 PRK13809 orotate phosphoribosy 97.4 0.00047 1E-08 61.6 7.3 51 208-260 116-167 (206)
75 TIGR01744 XPRTase xanthine pho 97.4 0.0006 1.3E-08 60.2 7.4 50 209-260 116-167 (191)
76 PRK13810 orotate phosphoribosy 97.4 0.00061 1.3E-08 60.0 7.2 57 209-269 121-178 (187)
77 PRK09219 xanthine phosphoribos 97.3 0.00069 1.5E-08 59.7 7.4 50 209-260 116-167 (189)
78 COG1040 ComFC Predicted amidop 97.3 0.00047 1E-08 62.4 5.9 47 204-252 177-224 (225)
79 COG0461 PyrE Orotate phosphori 97.2 0.0013 2.9E-08 58.4 7.4 52 209-262 111-162 (201)
80 PRK09246 amidophosphoribosyltr 97.1 0.00078 1.7E-08 67.8 5.8 43 204-248 352-394 (501)
81 PRK09177 xanthine-guanine phos 97.1 0.0027 5.9E-08 54.2 8.2 41 207-254 81-121 (156)
82 PRK08341 amidophosphoribosyltr 97.1 0.00089 1.9E-08 66.4 5.9 45 201-247 325-369 (442)
83 PRK07272 amidophosphoribosyltr 97.0 0.0013 2.8E-08 65.9 6.1 43 204-248 344-386 (484)
84 COG0503 Apt Adenine/guanine ph 97.0 0.0028 6.1E-08 55.3 7.4 39 209-250 115-153 (179)
85 COG0856 Orotate phosphoribosyl 96.9 0.0013 2.8E-08 57.0 4.8 57 200-259 131-187 (203)
86 PRK09123 amidophosphoribosyltr 96.9 0.0019 4.1E-08 64.7 6.3 45 201-247 351-395 (479)
87 PRK14734 coaE dephospho-CoA ki 96.8 0.0033 7.1E-08 55.7 6.9 55 1-65 126-180 (200)
88 PRK14730 coaE dephospho-CoA ki 96.8 0.0029 6.3E-08 55.8 6.0 65 1-79 126-190 (195)
89 PLN02440 amidophosphoribosyltr 96.8 0.0024 5.1E-08 64.0 5.9 41 206-248 336-376 (479)
90 TIGR01743 purR_Bsub pur operon 96.7 0.0036 7.8E-08 58.1 6.2 49 209-259 193-241 (268)
91 PRK14732 coaE dephospho-CoA ki 96.7 0.0034 7.4E-08 55.5 5.6 55 1-65 122-176 (196)
92 PRK07349 amidophosphoribosyltr 96.6 0.0017 3.7E-08 65.3 4.0 47 201-247 368-414 (500)
93 KOG3367 Hypoxanthine-guanine p 96.6 0.0027 5.9E-08 54.8 4.4 55 194-250 108-163 (216)
94 COG2236 Predicted phosphoribos 96.6 0.0085 1.8E-07 53.0 7.6 80 161-240 30-117 (192)
95 PRK09213 pur operon repressor; 96.6 0.0062 1.3E-07 56.6 6.8 47 209-258 195-242 (271)
96 PRK07847 amidophosphoribosyltr 96.5 0.0027 5.8E-08 64.0 4.6 47 201-247 358-404 (510)
97 PRK06388 amidophosphoribosyltr 96.5 0.0031 6.6E-08 63.1 4.7 47 201-247 347-393 (474)
98 TIGR01134 purF amidophosphorib 96.5 0.0029 6.2E-08 62.8 4.4 40 204-245 332-371 (442)
99 PRK07631 amidophosphoribosyltr 96.4 0.003 6.6E-08 63.1 4.3 47 201-247 339-385 (475)
100 PRK06781 amidophosphoribosyltr 96.4 0.0028 6E-08 63.4 4.0 48 200-247 338-385 (471)
101 PRK13477 bifunctional pantoate 96.4 0.011 2.4E-07 59.7 8.1 76 2-81 422-501 (512)
102 PRK05500 bifunctional orotidin 96.3 0.0091 2E-07 59.7 6.9 50 209-260 392-442 (477)
103 PRK00023 cmk cytidylate kinase 96.3 0.013 2.8E-07 52.8 7.3 79 2-80 141-222 (225)
104 TIGR00152 dephospho-CoA kinase 95.8 0.027 5.9E-07 48.9 6.7 54 1-64 124-177 (188)
105 PRK04182 cytidylate kinase; Pr 95.7 0.07 1.5E-06 45.1 8.7 75 2-80 93-174 (180)
106 PF15609 PRTase_2: Phosphoribo 95.7 0.061 1.3E-06 47.4 8.2 57 210-268 121-182 (191)
107 PRK03333 coaE dephospho-CoA ki 95.6 0.042 9.2E-07 53.7 7.7 108 1-131 124-237 (395)
108 TIGR02173 cyt_kin_arch cytidyl 95.5 0.061 1.3E-06 45.2 7.6 72 1-76 92-169 (171)
109 PRK01184 hypothetical protein; 95.3 0.063 1.4E-06 46.1 7.0 59 3-65 106-164 (184)
110 COG3954 PrkB Phosphoribulokina 95.2 0.028 6.1E-07 50.0 4.6 60 2-62 148-207 (289)
111 COG0034 PurF Glutamine phospho 94.5 0.036 7.7E-07 54.7 3.7 122 115-247 261-385 (470)
112 PLN02422 dephospho-CoA kinase 94.5 0.13 2.8E-06 46.8 7.1 54 1-64 126-179 (232)
113 cd02030 NDUO42 NADH:Ubiquinone 94.4 0.085 1.8E-06 47.1 5.7 72 2-79 144-217 (219)
114 PTZ00451 dephospho-CoA kinase; 94.3 0.13 2.9E-06 47.1 6.8 53 1-63 137-189 (244)
115 KOG0572 Glutamine phosphoribos 94.3 0.032 7E-07 53.9 2.8 49 199-247 345-393 (474)
116 PRK14731 coaE dephospho-CoA ki 94.2 0.17 3.7E-06 44.9 7.1 55 1-65 134-188 (208)
117 PRK14733 coaE dephospho-CoA ki 93.9 0.24 5.3E-06 44.1 7.6 54 1-64 129-182 (204)
118 PRK09518 bifunctional cytidyla 93.9 0.14 3.1E-06 53.8 7.0 78 2-83 156-235 (712)
119 PRK11860 bifunctional 3-phosph 93.9 0.14 3.1E-06 53.3 6.9 76 2-81 575-653 (661)
120 PRK00081 coaE dephospho-CoA ki 93.6 0.17 3.7E-06 44.3 6.0 65 1-79 125-189 (194)
121 PRK05057 aroK shikimate kinase 93.5 0.42 9.1E-06 41.1 8.1 56 2-66 98-157 (172)
122 TIGR00017 cmk cytidylate kinas 92.7 0.39 8.5E-06 43.1 6.9 75 2-79 139-215 (217)
123 KOG1503 Phosphoribosylpyrophos 92.4 0.2 4.2E-06 45.8 4.5 69 207-277 244-314 (354)
124 PF01712 dNK: Deoxynucleoside 92.4 0.062 1.3E-06 45.1 1.3 58 2-64 69-128 (146)
125 PRK00131 aroK shikimate kinase 92.0 0.86 1.9E-05 38.1 7.9 70 2-80 98-172 (175)
126 PRK13946 shikimate kinase; Pro 91.9 0.76 1.6E-05 39.7 7.6 73 2-82 104-179 (184)
127 PRK13949 shikimate kinase; Pro 91.8 0.34 7.3E-06 41.6 5.3 69 2-79 95-167 (169)
128 PRK08118 topology modulation p 91.6 0.24 5.1E-06 42.5 4.1 60 1-60 79-153 (167)
129 COG0703 AroK Shikimate kinase 91.6 1 2.2E-05 39.2 8.0 69 3-79 97-168 (172)
130 cd01673 dNK Deoxyribonucleosid 91.1 0.3 6.4E-06 42.2 4.3 56 2-62 126-184 (193)
131 COG0237 CoaE Dephospho-CoA kin 90.5 0.66 1.4E-05 41.3 5.9 58 1-68 124-181 (201)
132 PRK00698 tmk thymidylate kinas 90.2 1.2 2.6E-05 38.5 7.2 75 2-80 129-203 (205)
133 COG1102 Cmk Cytidylate kinase 90.0 1.6 3.5E-05 37.8 7.6 68 2-73 92-165 (179)
134 cd01672 TMPK Thymidine monopho 89.9 1.1 2.4E-05 38.1 6.8 71 2-80 127-197 (200)
135 COG1428 Deoxynucleoside kinase 89.8 0.51 1.1E-05 42.4 4.5 76 2-82 128-211 (216)
136 PRK13974 thymidylate kinase; P 89.6 1.2 2.6E-05 39.5 6.8 44 2-49 136-179 (212)
137 PRK03731 aroL shikimate kinase 89.3 1.6 3.5E-05 36.8 7.2 69 2-81 95-168 (171)
138 PRK04040 adenylate kinase; Pro 89.2 1.3 2.9E-05 38.7 6.7 74 2-76 112-186 (188)
139 PRK00625 shikimate kinase; Pro 88.8 2.2 4.8E-05 36.8 7.8 54 2-63 97-150 (173)
140 PRK13947 shikimate kinase; Pro 88.6 2.1 4.5E-05 36.0 7.4 66 2-79 95-163 (171)
141 TIGR03263 guanyl_kin guanylate 88.5 1.6 3.5E-05 37.0 6.7 64 3-80 114-177 (180)
142 PF02224 Cytidylate_kin: Cytid 87.9 1.1 2.4E-05 38.4 5.2 72 2-77 81-155 (157)
143 PRK06217 hypothetical protein; 87.8 2.6 5.6E-05 36.2 7.6 28 1-28 84-111 (183)
144 TIGR03574 selen_PSTK L-seryl-t 87.4 2.1 4.6E-05 38.7 7.2 104 3-137 98-205 (249)
145 COG0283 Cmk Cytidylate kinase 86.8 1.9 4.2E-05 38.9 6.3 76 2-80 139-216 (222)
146 COG0125 Tmk Thymidylate kinase 86.5 3.3 7.1E-05 37.1 7.7 72 2-80 129-200 (208)
147 PRK08154 anaerobic benzoate ca 85.6 3.3 7.1E-05 39.0 7.6 68 3-80 229-302 (309)
148 PRK07261 topology modulation p 85.2 0.31 6.6E-06 41.9 0.4 37 1-37 79-115 (171)
149 PRK13975 thymidylate kinase; P 84.6 3.1 6.7E-05 35.7 6.5 73 2-80 115-191 (196)
150 PRK07933 thymidylate kinase; V 84.6 2.8 6.1E-05 37.3 6.3 74 2-80 134-210 (213)
151 PRK13976 thymidylate kinase; P 84.0 2.6 5.7E-05 37.5 5.9 53 2-62 126-178 (209)
152 PRK14737 gmk guanylate kinase; 83.3 4.2 9.1E-05 35.4 6.7 63 3-76 118-181 (186)
153 COG0194 Gmk Guanylate kinase [ 82.8 4.9 0.00011 35.5 6.9 65 3-77 116-180 (191)
154 PF02223 Thymidylate_kin: Thym 82.7 4.4 9.5E-05 34.6 6.6 66 2-76 120-185 (186)
155 PRK06762 hypothetical protein; 82.0 5 0.00011 33.6 6.6 64 3-80 98-161 (166)
156 TIGR01360 aden_kin_iso1 adenyl 81.6 4.4 9.5E-05 34.3 6.1 47 2-48 108-159 (188)
157 PRK12269 bifunctional cytidyla 81.5 3.9 8.3E-05 44.2 6.9 76 2-82 208-284 (863)
158 PRK13973 thymidylate kinase; P 81.1 5.4 0.00012 35.3 6.7 21 2-22 130-150 (213)
159 cd00464 SK Shikimate kinase (S 80.5 5 0.00011 32.7 6.0 54 2-63 93-148 (154)
160 PRK08356 hypothetical protein; 80.0 6 0.00013 34.4 6.6 57 3-62 117-175 (195)
161 PRK00300 gmk guanylate kinase; 79.6 6.8 0.00015 33.9 6.8 66 3-82 118-183 (205)
162 TIGR00041 DTMP_kinase thymidyl 78.8 7.3 0.00016 33.3 6.7 57 2-63 129-185 (195)
163 PF00625 Guanylate_kin: Guanyl 77.9 8.3 0.00018 33.0 6.7 64 3-77 116-180 (183)
164 PLN02924 thymidylate kinase 77.6 6.4 0.00014 35.3 6.1 67 2-79 137-203 (220)
165 PRK13808 adenylate kinase; Pro 77.1 10 0.00022 36.4 7.7 21 1-21 107-127 (333)
166 PRK14527 adenylate kinase; Pro 76.4 6.6 0.00014 33.9 5.7 72 2-81 113-190 (191)
167 TIGR02322 phosphon_PhnN phosph 76.1 7.7 0.00017 32.8 6.0 62 3-81 113-176 (179)
168 smart00072 GuKc Guanylate kina 76.1 11 0.00023 32.5 6.9 66 3-78 116-181 (184)
169 PF15610 PRTase_3: PRTase ComF 76.1 5 0.00011 37.3 5.0 33 207-239 135-167 (274)
170 PLN02200 adenylate kinase fami 75.6 7.3 0.00016 35.3 6.0 73 2-82 147-223 (234)
171 TIGR01359 UMP_CMP_kin_fam UMP- 75.6 16 0.00034 30.9 7.8 23 2-24 105-127 (183)
172 PRK02496 adk adenylate kinase; 75.0 6.1 0.00013 33.7 5.1 70 2-81 109-182 (184)
173 PF01202 SKI: Shikimate kinase 73.3 15 0.00033 30.6 7.1 65 3-77 87-157 (158)
174 PRK14531 adenylate kinase; Pro 72.7 7.9 0.00017 33.2 5.3 70 2-81 109-182 (183)
175 PF01488 Shikimate_DH: Shikima 67.7 25 0.00053 28.8 6.9 51 207-265 9-59 (135)
176 PRK10078 ribose 1,5-bisphospho 66.8 22 0.00048 30.4 6.8 63 4-84 114-177 (186)
177 PRK14528 adenylate kinase; Pro 64.3 17 0.00037 31.4 5.6 48 1-48 108-160 (186)
178 PF00919 UPF0004: Uncharacteri 62.5 19 0.00042 28.1 5.1 63 207-270 33-98 (98)
179 PF03668 ATP_bind_2: P-loop AT 62.4 14 0.00029 34.8 4.8 67 4-82 85-155 (284)
180 PRK05541 adenylylsulfate kinas 61.9 2.8 6.2E-05 35.5 0.2 68 3-80 104-173 (176)
181 KOG3079 Uridylate kinase/adeny 60.7 16 0.00036 32.3 4.7 43 2-44 114-161 (195)
182 PF09960 DUF2194: Uncharacteri 59.1 28 0.0006 36.1 6.8 54 224-277 373-432 (585)
183 PRK03846 adenylylsulfate kinas 58.9 4.4 9.6E-05 35.3 0.9 14 4-17 125-138 (198)
184 PF13793 Pribosyltran_N: N-ter 58.6 42 0.00091 27.0 6.6 63 181-248 21-87 (116)
185 smart00450 RHOD Rhodanese Homo 57.1 25 0.00055 25.6 4.8 45 209-263 55-99 (100)
186 PRK05416 glmZ(sRNA)-inactivati 57.0 45 0.00098 31.3 7.4 66 4-77 89-158 (288)
187 PF08433 KTI12: Chromatin asso 56.4 61 0.0013 30.0 8.1 106 3-138 101-210 (270)
188 PRK14021 bifunctional shikimat 55.6 48 0.001 33.9 7.9 66 3-78 105-175 (542)
189 PRK14530 adenylate kinase; Pro 54.3 55 0.0012 28.6 7.2 22 1-22 106-127 (215)
190 PLN02199 shikimate kinase 52.4 48 0.001 31.5 6.8 50 3-61 197-257 (303)
191 KOG3220 Similar to bacterial d 52.3 50 0.0011 29.8 6.4 56 3-68 128-183 (225)
192 cd07409 MPP_CD73_N CD73 ecto-5 52.2 68 0.0015 29.6 7.8 76 180-271 138-213 (281)
193 PHA03132 thymidine kinase; Pro 50.4 12 0.00026 38.6 2.6 43 2-49 403-446 (580)
194 PHA03136 thymidine kinase; Pro 50.3 11 0.00024 36.8 2.1 44 2-50 193-236 (378)
195 PF11181 YflT: Heat induced st 50.0 26 0.00056 27.4 3.9 40 221-262 7-46 (103)
196 PF01555 N6_N4_Mtase: DNA meth 49.8 12 0.00027 32.2 2.3 21 213-233 193-213 (231)
197 PLN02842 nucleotide kinase 48.9 63 0.0014 32.9 7.3 39 208-248 355-394 (505)
198 PRK02812 ribose-phosphate pyro 48.8 78 0.0017 30.3 7.7 74 170-249 32-109 (330)
199 PRK14532 adenylate kinase; Pro 48.1 1E+02 0.0022 26.1 7.8 20 2-21 108-127 (188)
200 PF02875 Mur_ligase_C: Mur lig 48.1 86 0.0019 23.4 6.5 58 211-271 13-79 (91)
201 COG0120 RpiA Ribose 5-phosphat 47.5 61 0.0013 29.5 6.3 68 219-290 25-102 (227)
202 PRK13948 shikimate kinase; Pro 47.0 97 0.0021 26.9 7.4 67 3-79 105-175 (182)
203 PLN02297 ribose-phosphate pyro 45.3 2.9E+02 0.0062 26.5 11.1 89 159-250 14-106 (326)
204 PLN02469 hydroxyacylglutathion 44.4 66 0.0014 29.5 6.3 54 210-273 22-81 (258)
205 PRK13978 ribose-5-phosphate is 44.2 71 0.0015 29.1 6.3 69 219-289 26-103 (228)
206 COG1072 CoaA Panthothenate kin 43.6 16 0.00035 34.2 2.1 24 1-24 211-234 (283)
207 COG0462 PrsA Phosphoribosylpyr 43.4 81 0.0018 30.1 6.8 73 171-249 16-92 (314)
208 TIGR01251 ribP_PPkin ribose-ph 43.4 1.2E+02 0.0025 28.6 8.0 64 181-249 21-89 (308)
209 cd03416 CbiX_SirB_N Sirohydroc 43.0 82 0.0018 23.9 5.8 44 225-270 45-97 (101)
210 PRK00279 adk adenylate kinase; 42.3 46 0.00099 29.2 4.8 21 2-22 108-128 (215)
211 PRK00889 adenylylsulfate kinas 41.7 6.4 0.00014 33.3 -0.8 15 4-18 103-117 (175)
212 PRK03092 ribose-phosphate pyro 41.5 1.3E+02 0.0029 28.3 8.0 64 181-249 10-77 (304)
213 PRK00934 ribose-phosphate pyro 41.2 1.2E+02 0.0025 28.3 7.5 63 181-248 20-85 (285)
214 PTZ00145 phosphoribosylpyropho 40.9 1.2E+02 0.0026 30.3 7.8 83 161-249 119-207 (439)
215 PF04312 DUF460: Protein of un 40.5 29 0.00062 29.2 2.9 73 211-287 32-123 (138)
216 PF13189 Cytidylate_kin2: Cyti 39.4 33 0.00071 29.4 3.3 59 3-63 116-178 (179)
217 PRK04923 ribose-phosphate pyro 39.3 1.4E+02 0.003 28.5 7.7 72 171-248 18-93 (319)
218 COG1660 Predicted P-loop-conta 38.6 38 0.00082 31.7 3.6 68 4-82 86-156 (286)
219 cd06353 PBP1_BmpA_Med_like Per 38.2 1.1E+02 0.0024 27.7 6.7 54 212-269 33-86 (258)
220 PRK10241 hydroxyacylglutathion 37.8 1.4E+02 0.0031 27.0 7.4 51 211-271 22-78 (251)
221 COG0169 AroE Shikimate 5-dehyd 37.8 72 0.0016 29.9 5.5 40 203-248 119-158 (283)
222 PLN02757 sirohydrochlorine fer 37.7 67 0.0015 27.2 4.9 44 225-270 59-111 (154)
223 PLN02384 ribose-5-phosphate is 37.6 92 0.002 29.0 6.1 68 219-288 54-131 (264)
224 PRK02269 ribose-phosphate pyro 36.7 1.7E+02 0.0037 27.8 7.9 65 181-250 26-94 (320)
225 TIGR03575 selen_PSTK_euk L-ser 36.6 2.3E+02 0.0049 27.4 8.8 20 3-22 157-176 (340)
226 TIGR01809 Shik-DH-AROM shikima 36.3 67 0.0015 29.7 5.1 48 207-262 122-169 (282)
227 cd02022 DPCK Dephospho-coenzym 35.9 29 0.00064 29.6 2.4 42 18-65 135-176 (179)
228 PF02310 B12-binding: B12 bind 35.8 2E+02 0.0043 22.2 7.1 59 210-275 28-92 (121)
229 cd01428 ADK Adenylate kinase ( 35.7 85 0.0019 26.4 5.3 23 2-24 106-128 (194)
230 PRK07199 phosphoribosylpyropho 35.5 1.8E+02 0.0039 27.4 7.8 64 181-249 23-89 (301)
231 PF13649 Methyltransf_25: Meth 35.3 83 0.0018 23.7 4.7 54 215-272 1-58 (101)
232 PF01170 UPF0020: Putative RNA 35.3 27 0.00058 30.1 2.1 44 213-256 30-75 (179)
233 PRK00553 ribose-phosphate pyro 34.5 1.9E+02 0.0041 27.7 7.9 73 171-249 21-97 (332)
234 PRK02458 ribose-phosphate pyro 34.2 3.3E+02 0.0071 25.9 9.5 83 161-249 9-97 (323)
235 PLN02369 ribose-phosphate pyro 33.4 2.1E+02 0.0046 26.9 7.9 64 181-249 12-79 (302)
236 COG4974 XerD Site-specific rec 32.4 77 0.0017 30.0 4.7 74 27-106 184-257 (300)
237 TIGR01313 therm_gnt_kin carboh 32.4 1.1E+02 0.0024 25.1 5.4 19 4-22 97-115 (163)
238 PRK01259 ribose-phosphate pyro 32.3 1.9E+02 0.0042 27.3 7.5 64 181-249 21-88 (309)
239 cd08162 MPP_PhoA_N Synechococc 32.1 1.3E+02 0.0028 28.4 6.3 45 225-271 195-239 (313)
240 PRK05537 bifunctional sulfate 31.9 54 0.0012 33.8 4.0 67 3-78 494-561 (568)
241 cd00227 CPT Chloramphenicol (C 31.9 1.4E+02 0.0031 25.0 6.0 59 4-76 114-173 (175)
242 PLN03046 D-glycerate 3-kinase; 31.6 51 0.0011 33.1 3.5 51 1-52 376-432 (460)
243 COG0118 HisH Glutamine amidotr 31.5 63 0.0014 28.9 3.8 16 277-292 39-54 (204)
244 cd01453 vWA_transcription_fact 30.8 1.7E+02 0.0038 25.0 6.5 51 210-263 108-159 (183)
245 TIGR01302 IMP_dehydrog inosine 30.4 99 0.0021 30.8 5.4 56 214-272 213-273 (450)
246 PRK12548 shikimate 5-dehydroge 30.4 1.8E+02 0.0039 26.9 7.0 36 207-248 123-158 (289)
247 COG4088 Predicted nucleotide k 30.0 2E+02 0.0043 26.4 6.6 64 3-78 104-172 (261)
248 PRK03839 putative kinase; Prov 29.9 3.3E+02 0.0072 22.7 8.0 20 2-21 81-100 (180)
249 PRK13384 delta-aminolevulinic 29.8 1.8E+02 0.0039 27.9 6.7 45 224-270 61-120 (322)
250 cd01444 GlpE_ST GlpE sulfurtra 29.5 77 0.0017 23.4 3.6 31 209-244 55-85 (96)
251 cd01529 4RHOD_Repeats Member o 29.2 1.1E+02 0.0024 22.7 4.5 33 209-246 55-87 (96)
252 cd00158 RHOD Rhodanese Homolog 29.0 1.1E+02 0.0024 21.7 4.3 33 209-246 49-81 (89)
253 COG1207 GlmU N-acetylglucosami 29.0 2.3E+02 0.0049 28.5 7.4 63 211-275 69-138 (460)
254 PRK11524 putative methyltransf 28.9 40 0.00087 31.2 2.2 41 212-261 209-249 (284)
255 TIGR01351 adk adenylate kinase 28.6 1.1E+02 0.0023 26.7 4.8 20 2-21 105-124 (210)
256 cd04821 PA_M28_1_2 PA_M28_1_2: 28.0 1.2E+02 0.0025 26.0 4.7 43 201-247 43-100 (157)
257 PRK13699 putative methylase; P 28.0 43 0.00094 30.1 2.2 19 214-232 166-184 (227)
258 PF02384 N6_Mtase: N-6 DNA Met 27.8 65 0.0014 29.8 3.5 23 214-236 49-71 (311)
259 cd02021 GntK Gluconate kinase 27.6 85 0.0018 25.4 3.8 34 3-38 100-133 (150)
260 PRK00258 aroE shikimate 5-dehy 27.1 1.4E+02 0.0031 27.4 5.5 49 206-262 119-167 (278)
261 cd04823 ALAD_PBGS_aspartate_ri 26.5 2.2E+02 0.0048 27.2 6.7 50 223-274 53-120 (320)
262 TIGR01470 cysG_Nterm siroheme 26.4 2E+02 0.0043 25.3 6.2 46 207-260 6-51 (205)
263 TIGR01530 nadN NAD pyrophospha 26.0 2.8E+02 0.0061 28.3 7.9 134 106-271 78-213 (550)
264 PHA01735 hypothetical protein 25.8 1.1E+02 0.0024 22.7 3.5 40 219-265 28-67 (76)
265 COG0796 MurI Glutamate racemas 25.7 1.2E+02 0.0025 28.4 4.6 85 158-268 11-95 (269)
266 cd00384 ALAD_PBGS Porphobilino 25.3 2.5E+02 0.0054 26.8 6.8 49 224-274 51-115 (314)
267 PF00455 DeoRC: DeoR C termina 25.2 2.7E+02 0.0059 23.3 6.6 51 208-269 17-67 (161)
268 cd04824 eu_ALAD_PBGS_cysteine_ 25.0 2.6E+02 0.0056 26.8 6.8 45 224-270 51-113 (320)
269 PF02873 MurB_C: UDP-N-acetyle 24.9 55 0.0012 26.0 2.1 33 52-84 60-92 (105)
270 PF10662 PduV-EutP: Ethanolami 24.6 1.2E+02 0.0026 25.5 4.1 40 219-261 101-140 (143)
271 PRK09283 delta-aminolevulinic 24.5 2.7E+02 0.0059 26.7 6.9 45 224-270 59-118 (323)
272 PF13241 NAD_binding_7: Putati 24.5 86 0.0019 24.2 3.1 36 207-249 4-39 (103)
273 PLN02962 hydroxyacylglutathion 24.4 3.6E+02 0.0078 24.6 7.7 56 209-272 34-95 (251)
274 cd07408 MPP_SA0022_N Staphyloc 24.4 2.9E+02 0.0062 24.9 7.0 77 181-271 125-208 (257)
275 cd06259 YdcF-like YdcF-like. Y 24.4 1.1E+02 0.0023 25.0 3.8 63 210-274 67-130 (150)
276 TIGR00455 apsK adenylylsulfate 24.3 1.3E+02 0.0027 25.5 4.4 15 3-17 118-132 (184)
277 PF00490 ALAD: Delta-aminolevu 24.2 3.2E+02 0.0069 26.2 7.3 46 223-270 56-118 (324)
278 smart00785 AARP2CN AARP2CN (NU 23.7 32 0.0007 26.1 0.5 14 276-289 57-71 (83)
279 PRK06827 phosphoribosylpyropho 23.6 1.7E+02 0.0037 28.7 5.6 48 199-249 66-131 (382)
280 COG1377 FlhB Flagellar biosynt 23.6 3.1E+02 0.0067 26.8 7.2 71 51-129 258-346 (363)
281 PRK05854 short chain dehydroge 23.3 2.7E+02 0.0059 25.7 6.8 29 207-238 11-39 (313)
282 PF01903 CbiX: CbiX; InterPro 23.2 48 0.001 25.4 1.4 41 228-270 41-90 (105)
283 cd00419 Ferrochelatase_C Ferro 23.1 69 0.0015 26.4 2.4 36 223-260 76-111 (135)
284 PF08142 AARP2CN: AARP2CN (NUC 22.9 34 0.00073 26.1 0.5 22 268-289 50-73 (85)
285 cd06306 PBP1_TorT-like TorT-li 22.9 1.2E+02 0.0027 26.8 4.2 37 223-260 192-228 (268)
286 PRK05320 rhodanese superfamily 22.3 2.1E+02 0.0046 26.2 5.7 47 208-264 173-219 (257)
287 PF02608 Bmp: Basic membrane p 22.1 2.1E+02 0.0046 26.6 5.8 46 222-270 46-91 (306)
288 PF11072 DUF2859: Protein of u 21.8 1.2E+02 0.0027 25.5 3.7 57 211-271 63-119 (142)
289 PRK10936 TMAO reductase system 21.8 1.4E+02 0.003 28.0 4.5 38 222-260 238-275 (343)
290 COG0621 MiaB 2-methylthioadeni 21.6 2.1E+02 0.0045 28.7 5.8 66 203-271 33-101 (437)
291 COG0563 Adk Adenylate kinase a 21.6 3.2E+02 0.007 23.5 6.4 68 2-79 108-175 (178)
292 TIGR03765 ICE_PFL_4695 integra 21.5 1.2E+02 0.0026 24.3 3.3 55 212-270 26-80 (105)
293 cd07406 MPP_CG11883_N Drosophi 21.5 2.2E+02 0.0047 25.8 5.6 77 180-271 126-202 (257)
294 cd01532 4RHOD_Repeat_1 Member 21.4 1.3E+02 0.0029 22.3 3.6 31 210-245 50-82 (92)
295 COG1751 Uncharacterized conser 21.4 4.8E+02 0.01 22.6 7.1 53 222-278 12-65 (186)
296 TIGR03587 Pse_Me-ase pseudamin 21.4 3.1E+02 0.0067 24.0 6.4 53 215-274 47-99 (204)
297 PF03807 F420_oxidored: NADP o 21.4 2.9E+02 0.0063 20.3 5.5 44 219-263 4-47 (96)
298 PRK07667 uridine kinase; Provi 21.4 79 0.0017 27.3 2.5 30 31-61 161-193 (193)
299 cd01533 4RHOD_Repeat_2 Member 21.2 1.7E+02 0.0038 22.3 4.3 28 209-239 65-92 (109)
300 cd01518 RHOD_YceA Member of th 21.0 1.9E+02 0.0042 21.6 4.4 31 209-244 60-90 (101)
301 KOG1348 Asparaginyl peptidases 20.6 98 0.0021 30.4 3.1 24 224-247 64-87 (477)
302 PRK13940 glutamyl-tRNA reducta 20.6 1.2E+02 0.0027 29.9 4.0 50 206-263 177-226 (414)
303 PRK12550 shikimate 5-dehydroge 20.6 1.1E+02 0.0023 28.4 3.4 44 210-261 122-165 (272)
304 PLN02772 guanylate kinase 20.4 3.5E+02 0.0077 26.7 7.0 68 3-77 249-316 (398)
305 PRK04128 1-(5-phosphoribosyl)- 20.2 1.2E+02 0.0026 27.3 3.5 53 218-275 75-128 (228)
306 PRK12749 quinate/shikimate deh 20.0 3E+02 0.0065 25.6 6.3 50 207-262 121-171 (288)
307 PRK05500 bifunctional orotidin 20.0 3.4E+02 0.0073 27.5 7.0 45 223-268 162-207 (477)
No 1
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.1e-68 Score=467.70 Aligned_cols=204 Identities=41% Similarity=0.626 Sum_probs=196.7
Q ss_pred CceeeccchHHHHHHhHhhhcCCCChhhHHHHHHHHHHHHHHHHhCCCCCeeEEEeCCCCcceeeeeec-cceeEeeehH
Q 022342 91 PNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFC-KKLCGVSIVR 169 (298)
Q Consensus 91 ~~l~vl~~~~~l~~llt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~tp~g~~~~g~~~~-~~i~~V~IlR 169 (298)
.++++++|| +++|++|+|||++|++.+||++++||++||+|||++++|+++++|+||.| +++|..+. +++|+|||||
T Consensus 2 ~~v~vi~hp-li~~~lt~lRdk~t~~~~Fr~~~~ei~~lL~yEa~~~l~~e~~~ieTP~~-~~~~~~~~~~~i~~V~ILR 79 (210)
T COG0035 2 MNVYVIDHP-LVKHKLTILRDKNTGTKEFRELLDEIGRLLAYEATRDLPLEKVEIETPLG-PTEGVQIAGKKIVIVPILR 79 (210)
T ss_pred CceEEeCcH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhCcCceeEEEEECCCc-ceeeeeecCCcEEEEEEee
Confidence 579999996 79999999999999999999999999999999999999999999999999 68888887 4599999999
Q ss_pred ---HHHHHHHHhccCCccceEEEEecCCCC-ceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEE
Q 022342 170 ---SMENALRACCKGIKIGKILIHRDGDNG-KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIF 245 (298)
Q Consensus 170 ---~m~~~~~~~~p~a~~g~i~i~R~~~t~-~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~v 245 (298)
+|++|+++++|+|++||||+|||++|+ +..||.|||++++++.|+|+|||+|||+|+++|++.|+++| .+++|++
T Consensus 80 AGl~m~~gl~~~~P~a~vG~ig~~Rdeet~~p~~yy~KLP~~~~~~~viv~DPMLATG~s~i~ai~~L~~~G-~~~~I~~ 158 (210)
T COG0035 80 AGLGMVEGLLKLIPSARVGHIGIYRDEETLEPVLYYEKLPEDIDERTVIVLDPMLATGGSAIAAIDLLKKRG-GPKNIKV 158 (210)
T ss_pred ccccHHHHHHHhCCcceEEEEEEEecCccCceehhHHhCCCcccCCeEEEECchhhccHhHHHHHHHHHHhC-CCceEEE
Confidence 899999999999999999999999999 57899999999999999999999999999999999999997 6699999
Q ss_pred EEEEeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCceeCCCCchhhhccCCC
Q 022342 246 LNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGTD 297 (298)
Q Consensus 246 v~~vas~~gl~~l~~~~p~v~i~~a~id~~l~~~~~ivPGlGD~GdR~fgt~ 297 (298)
+|++|+|+|++++.++||+|+||||+||++||++|||+|||||||||+|||+
T Consensus 159 v~~vAapeGi~~v~~~~p~v~I~ta~iD~~Lne~gYIvPGLGDaGDR~fGt~ 210 (210)
T COG0035 159 VSLVAAPEGIKAVEKAHPDVEIYTAAIDEGLNEKGYIVPGLGDAGDRLFGTK 210 (210)
T ss_pred EEEEecHHHHHHHHHhCCCCeEEEEEeccccccCCCCccCCCcccccccCCC
Confidence 9999999999999999999999999999999999999999999999999996
No 2
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=100.00 E-value=4.5e-64 Score=447.13 Aligned_cols=201 Identities=46% Similarity=0.758 Sum_probs=185.2
Q ss_pred eccchHHHHHHhHhhhcCCCChhhHHHHHHHHHHHHHHHHhCC-CCCeeEEEeCCCCcceeeeeecc-ceeEeeehH---
Q 022342 95 VIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGH-LPFTEKQVVTPTGSMYTGVDFCK-KLCGVSIVR--- 169 (298)
Q Consensus 95 vl~~~~~l~~llt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~-lp~~~~~v~tp~g~~~~g~~~~~-~i~~V~IlR--- 169 (298)
|++| |++++|+|+|||++|++.+||++++||++||+|||+++ +|+++++|+||+|.++.|..... ++|+|||||
T Consensus 1 V~~~-p~~~~~lt~LRd~~t~~~~Fr~~~~rl~~lL~~eal~~~l~~~~~~v~Tp~g~~~~g~~~~~~~i~~V~IlRaG~ 79 (207)
T PF14681_consen 1 VPQH-PLLRHLLTILRDRNTSRAEFRRYLDRLGRLLAEEALADWLPYEEVEVETPLGHKYGGVILNEDKICIVPILRAGL 79 (207)
T ss_dssp EEB--HHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHTTT-S-EEEEEEEESSSEEEEEEECSSGCEEEEEETTTHH
T ss_pred CCCC-HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHhccccceeEEEEcCCCcEEEEEEeecccEEEEEEeCCcH
Confidence 4566 58999999999999999999999999999999999996 99999999999999888876654 999999999
Q ss_pred HHHHHHHHhccCCccceEEEEecCCCC-ceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEE
Q 022342 170 SMENALRACCKGIKIGKILIHRDGDNG-KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNL 248 (298)
Q Consensus 170 ~m~~~~~~~~p~a~~g~i~i~R~~~t~-~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~ 248 (298)
+|++++++++|+|++|||+++||++|+ +++||.|||+++++++|||+|||+|||+|+++|++.|+++|+++++|+++|+
T Consensus 80 ~m~~~~~~~~p~a~~g~i~i~r~~~t~~p~~~y~~LP~~i~~~~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I~~v~~ 159 (207)
T PF14681_consen 80 PMLEGFREVFPDARVGHIGIQRDEETLEPVLYYNKLPEDIENRKVILLDPMLATGGSAIAAIEILKEHGVPEENIIIVSV 159 (207)
T ss_dssp HHHHHHHHHSTTSEEEEEEEEEETTTSSEEEEEEE--TTGTTSEEEEEESEESSSHHHHHHHHHHHHTTG-GGEEEEEEE
T ss_pred HHHHHHHHhCCCcceEEEEEEEcCCccceeeeHhhCCCCccCCEEEEEeccccchhhHHHHHHHHHHcCCCcceEEEEEE
Confidence 899999999999999999999999998 6899999999999999999999999999999999999999999999999999
Q ss_pred EeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCceeCCCCchhhhccCC
Q 022342 249 ISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGT 296 (298)
Q Consensus 249 vas~~gl~~l~~~~p~v~i~~a~id~~l~~~~~ivPGlGD~GdR~fgt 296 (298)
++|++|++++.++||+|+|||++||++||++|||+||+||||||||||
T Consensus 160 ias~~Gl~~l~~~~P~v~I~ta~iD~~L~~~~~i~PGlGD~GdR~fgT 207 (207)
T PF14681_consen 160 IASPEGLERLLKAFPDVRIYTAAIDPELNENGYIVPGLGDAGDRYFGT 207 (207)
T ss_dssp EEEHHHHHHHHHHSTTSEEEEEEEESEEETTSEEESS-S-HHHHHHT-
T ss_pred EecHHHHHHHHHhCCCeEEEEEEEccccCCCCCccCCCCChHhcccCc
Confidence 999999999999999999999999999999999999999999999998
No 3
>PLN02541 uracil phosphoribosyltransferase
Probab=100.00 E-value=4.2e-62 Score=442.12 Aligned_cols=203 Identities=27% Similarity=0.401 Sum_probs=189.0
Q ss_pred eeeccchHHHHHHhHhhhcCCCChhhHHHHHHHHHHHHHHHHhCC-CCCeeEEEeCCCCcceeeeeec--cceeEeeehH
Q 022342 93 VYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGH-LPFTEKQVVTPTGSMYTGVDFC--KKLCGVSIVR 169 (298)
Q Consensus 93 l~vl~~~~~l~~llt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~-lp~~~~~v~tp~g~~~~g~~~~--~~i~~V~IlR 169 (298)
+++.+ +|++++++|+|||++|++.+||++++||++||+|||++. +|+++++|+||+|. +.+..+. .++|+|||||
T Consensus 34 ~~~~~-~p~i~~~lt~LRd~~T~~~~Fr~~~~rl~~lL~~Ea~~~~lp~~~~~V~TP~g~-~~~~~~~~~~~i~~V~ILR 111 (244)
T PLN02541 34 VFVPP-HPLIKHWLSVLRNEQTPPPIFRSAMAELGRLLIYEASRDWLPTMTGEVQTPMGV-ADVEFIDPREPVAVVPILR 111 (244)
T ss_pred EEecC-ChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhccCCccceEEECCCCe-EEEEeecCCCcEEEEeEeC
Confidence 44445 468999999999999999999999999999999999875 99999999999996 3444443 4599999999
Q ss_pred ---HHHHHHHHhccCCccceEEEEecCCCC-ceeEeccCCCCCC-CcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEE
Q 022342 170 ---SMENALRACCKGIKIGKILIHRDGDNG-KQLIYEKLPNDIS-ERHVLLLDPVLATGNSANQAIQLLIEKGVPESHII 244 (298)
Q Consensus 170 ---~m~~~~~~~~p~a~~g~i~i~R~~~t~-~~~~y~klP~~i~-~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~ 244 (298)
+|++++++++|++++|+++++||+.|. +++||.|||++++ ++.|+|+|||||||+|+++|++.|+++|+++++|+
T Consensus 112 AGl~m~~g~~~~~P~a~vg~i~~~rd~~t~e~~~yy~kLP~~i~~~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~ 191 (244)
T PLN02541 112 AGLVLLEHASSVLPATKTYHLGFVRDEETLQPSMYLNKLPDKFPEGSRVLVVDPMLATGGTIVAAIDELVSRGASVEQIR 191 (244)
T ss_pred CcHhHHHHHHhhCCCCeeEEEEEEEcccccceEEeeccCchhcCCCCEEEEECcchhhhHHHHHHHHHHHHcCCCcccEE
Confidence 899999999999999999999999998 4789999999997 57999999999999999999999999999888999
Q ss_pred EEEEEeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCceeCCCCchhhhccCCC
Q 022342 245 FLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGTD 297 (298)
Q Consensus 245 vv~~vas~~gl~~l~~~~p~v~i~~a~id~~l~~~~~ivPGlGD~GdR~fgt~ 297 (298)
++|++||++|++++.++||+|+|||++||++||++|||+|||||||||||||.
T Consensus 192 ~v~~ias~~Gl~~i~~~fP~v~I~ta~ID~~Lne~~yIvPGlGDaGDR~fGt~ 244 (244)
T PLN02541 192 VVCAVAAPPALKKLSEKFPGLHVYAGIIDEEVNEKGYIVPGLGDAGDRSFGTE 244 (244)
T ss_pred EEEEEECHHHHHHHHHHCcCCEEEEEEECccccCCCcCcCCCCCccccccCCC
Confidence 99999999999999999999999999999999999999999999999999984
No 4
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=100.00 E-value=5.4e-59 Score=414.52 Aligned_cols=202 Identities=37% Similarity=0.541 Sum_probs=191.9
Q ss_pred ceeeccchHHHHHHhHhhhcCCCChhhHHHHHHHHHHHHHHHHhCCCCCeeEEEeCCCCcceeeeeec-cceeEeeehH-
Q 022342 92 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFC-KKLCGVSIVR- 169 (298)
Q Consensus 92 ~l~vl~~~~~l~~llt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~tp~g~~~~g~~~~-~~i~~V~IlR- 169 (298)
|||+++| |++++++|+|||++|++.+||++++||++||+|||++++|+++++|+||+|.+ .|..+. +++|+|||||
T Consensus 1 ~v~~~~~-p~~~~~lt~lRd~~t~~~~Fr~~~~rl~~~l~~ea~~~l~~~~~~v~tp~g~~-~~~~~~~~~i~~V~ILrg 78 (207)
T TIGR01091 1 MVVVIEH-PLIKHKLTLLRDKNTDTKEFRELLRELGRLLAYEATRDLELEEVEVETPLGET-EGGRILGKKIVLVPILRA 78 (207)
T ss_pred CeEecCC-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcE-EEeEecCCcEEEEEEeCC
Confidence 5899997 68999999999999999999999999999999999999999999999999974 555554 5799999999
Q ss_pred --HHHHHHHHhccCCccceEEEEecCCCC-ceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEE
Q 022342 170 --SMENALRACCKGIKIGKILIHRDGDNG-KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL 246 (298)
Q Consensus 170 --~m~~~~~~~~p~a~~g~i~i~R~~~t~-~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv 246 (298)
+|++++++++|.+++|+++++|+++|. +..+|.++|++++++.|+|+|||+|||+|+.+|++.|+++|+ ++|+++
T Consensus 79 g~~~~~~l~~~l~~~~v~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~--~~I~v~ 156 (207)
T TIGR01091 79 GLGMVDGVLKLIPEAKVGHVGAYRNEETLKPVPYYSKLPEDIDERTVIVLDPMLATGGTMIAALDLLKKRGA--KKIKVL 156 (207)
T ss_pred cHHHHHHHHHhCCcCceeEEEEEeCCCCCCCEEEEecCCCCCCCCEEEEECCCccchHHHHHHHHHHHHcCC--CEEEEE
Confidence 899999999999999999999998776 578999999999999999999999999999999999999998 579999
Q ss_pred EEEeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCceeCCCCchhhhccCCC
Q 022342 247 NLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGTD 297 (298)
Q Consensus 247 ~~vas~~gl~~l~~~~p~v~i~~a~id~~l~~~~~ivPGlGD~GdR~fgt~ 297 (298)
|++++++|++++.++||+++|||++||++||++|||+||+||||||||||+
T Consensus 157 ~ll~~~~gl~~l~~~~p~v~i~~~~id~~l~~~~yivPGlGd~Gdr~fgt~ 207 (207)
T TIGR01091 157 SIVAAPEGIEAVEKAHPDVDIYTAAIDEKLNDNGYIVPGLGDAGDRAFGTK 207 (207)
T ss_pred EEecCHHHHHHHHHHCCCCEEEEEEECCCccCCccCcCCCCCccccccCCC
Confidence 999999999999999999999999999999999999999999999999985
No 5
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=100.00 E-value=1.1e-57 Score=406.74 Aligned_cols=202 Identities=39% Similarity=0.573 Sum_probs=194.0
Q ss_pred ceeeccchHHHHHHhHhhhcCCCChhhHHHHHHHHHHHHHHHHhCCCCCeeEEEeCCCCcceeeeeec-cceeEeeehH-
Q 022342 92 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFC-KKLCGVSIVR- 169 (298)
Q Consensus 92 ~l~vl~~~~~l~~llt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~tp~g~~~~g~~~~-~~i~~V~IlR- 169 (298)
++|+++| |++++|+|+|||++|++.+||++++||++||+|||++++|+++++|+||+| .+.|..+. +++|+|||+|
T Consensus 3 ~v~~~~~-p~~~~~lt~lRd~~t~~~~fr~~~~rl~~~l~~eal~~l~~~~~~v~tp~g-~~~g~~~~~~~~vvV~Ilrg 80 (209)
T PRK00129 3 KVHVVDH-PLIQHKLTLLRDKNTSTKRFRELLEELGRLLAYEATRDLPLEEVEIETPLG-KTTGKRIAGKKLVIVPILRA 80 (209)
T ss_pred ceEecCC-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhcccceeEEEEECCCC-cEEEEEecCCeEEEEEEeCC
Confidence 7999997 689999999999999999999999999999999999999999999999999 58898876 5799999999
Q ss_pred --HHHHHHHHhccCCccceEEEEecCCCC-ceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEE
Q 022342 170 --SMENALRACCKGIKIGKILIHRDGDNG-KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL 246 (298)
Q Consensus 170 --~m~~~~~~~~p~a~~g~i~i~R~~~t~-~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv 246 (298)
+|++++++.+|.+++|+++++|+++|. +..+|.++|.++++++|||+|||++||+|+++|++.|+++|+ ++|+++
T Consensus 81 G~~~~~~l~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~--~~I~~~ 158 (209)
T PRK00129 81 GLGMVDGVLKLIPSARVGHIGLYRDEETLEPVEYYVKLPEDIDERTVIVVDPMLATGGSAIAAIDLLKKRGA--KNIKVL 158 (209)
T ss_pred CHHHHHHHHHhCCcCeeeeEEEEeCCCCCCCEEEEeeCCCcCCCCEEEEECCcccchHHHHHHHHHHHHcCC--CEEEEE
Confidence 899999999999999999999998775 578899999999999999999999999999999999999997 799999
Q ss_pred EEEeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCceeCCCCchhhhccCCC
Q 022342 247 NLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGTD 297 (298)
Q Consensus 247 ~~vas~~gl~~l~~~~p~v~i~~a~id~~l~~~~~ivPGlGD~GdR~fgt~ 297 (298)
|++++++|++++.++||+++|||++||++||++|||+||+||||||||||+
T Consensus 159 ~ll~~~~gl~~l~~~~p~v~i~~~~iD~~l~~~~yi~PGlGd~Gdr~fgt~ 209 (209)
T PRK00129 159 CLVAAPEGIKALEEAHPDVEIYTAAIDEKLNEHGYIVPGLGDAGDRLFGTK 209 (209)
T ss_pred EEecCHHHHHHHHHHCCCcEEEEEeecCCcCCCCcCCCCCCCccccccCCC
Confidence 999999999999999999999999999999999999999999999999985
No 6
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=2.6e-55 Score=431.13 Aligned_cols=296 Identities=68% Similarity=1.119 Sum_probs=288.2
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHHhhh
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTK 80 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~ 80 (298)
++.|+|+|+|.|.|++||+.||+.+|||+++.++.||.++++|+|++||+|++++||++||.+++|.++++.+.++|+..
T Consensus 174 ~~~k~fvd~~~d~rla~ri~r~~~~~g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~~~n~vai~l~~~~i~~~ 253 (473)
T KOG4203|consen 174 FTMKLFVDTDADVRLARRILRDIVERGRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRGGDNDVAIDLIVQHILSI 253 (473)
T ss_pred hcceEEEecCcchhhHHHHhcchhhhcccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeeccccccccceeeehhhhhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCceeeccchHHHHHHhHhhhcCCCChhhHHHHHHHHHHHHHHHHhCCCCCeeEEEeCCCCcceeeeeecc
Q 022342 81 LGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCK 160 (298)
Q Consensus 81 l~~~~l~~~~~~l~vl~~~~~l~~llt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~tp~g~~~~g~~~~~ 160 (298)
|.+++.+....|+..+++++++++++|.+||..|+.++|.++.++++|+++++++.++|+.+..+.||.|..+.|.....
T Consensus 254 L~~~~~~~l~~~~~~l~~t~~i~~~~t~~~~~~Ts~~~~~~~~~~~vrl~l~~~~~~~p~~~~~i~~~~~~~~~~~~~~~ 333 (473)
T KOG4203|consen 254 LAEKSYVRLYNNVLSLPDTNQIKGKLTLLRDHTTSRHPFSFYSDHLVRLVLEHGLGHLPYTEKRIVTPRGLAYSGVNFCK 333 (473)
T ss_pred hhccccccccccceecCCccccCCceeEeecCCcCCCCHHHHHHHHHHHHhhcccCcccceeeeEecccccchhcccccc
Confidence 99888888888999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred ceeEeeehH---HHHHHHHHhccCCccceEEEEecCCCC-ceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHc
Q 022342 161 KLCGVSIVR---SMENALRACCKGIKIGKILIHRDGDNG-KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 236 (298)
Q Consensus 161 ~i~~V~IlR---~m~~~~~~~~p~a~~g~i~i~R~~~t~-~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~ 236 (298)
++|+|+|+| .|+.+++.++|+.++|+|+++|+++|+ +.++|.++|++++.. |+++||+++||+++.+|++.|.++
T Consensus 334 ~i~gv~i~r~g~~~~~alr~~~~~vri~~il~qr~~~t~~~~l~~~~lP~~is~~-V~ll~p~~~tg~~~~~a~~~ll~~ 412 (473)
T KOG4203|consen 334 QICGVSIPRSGESMETALRAACKGVRIGKILIQRDEETGEPELHYEKLPKDISDR-VLLLDPVLATGNSAMMAIILLLDH 412 (473)
T ss_pred hhccCCCCcchhHHHHHHHHHcCCceeeeeEeechhhccchhhhhhhCccccccc-eeeecchhhcchhHHHHHHHHHhC
Confidence 999999999 899999999999999999999999998 579999999999988 999999999999999999999999
Q ss_pred CCCCccEEEEEEEeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCceeCCCCchhhhccCCC
Q 022342 237 GVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGTD 297 (298)
Q Consensus 237 g~~~~~I~vv~~vas~~gl~~l~~~~p~v~i~~a~id~~l~~~~~ivPGlGD~GdR~fgt~ 297 (298)
|+++++|.+++++++++|+.++..+||.+++|++++|+.+|+++|++||+||||||||||.
T Consensus 413 gv~~~~i~~~~ll~~~~~~~~~~~~f~~v~~v~~~~d~~~~~~~~~~pg~g~~~dryfg~~ 473 (473)
T KOG4203|consen 413 GVPEENIIFLNLLAAPQGIHEVAYAFPKVKIVTSQIDKLLNEKRYVVPGLGNFGDRYFGTD 473 (473)
T ss_pred CCcHHHhHHHHHHhhhhhhhHHHHhcccceeehhhhcccccccceECcccccchhhccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999984
No 7
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=100.00 E-value=1.1e-42 Score=299.83 Aligned_cols=200 Identities=45% Similarity=0.856 Sum_probs=189.7
Q ss_pred CCCceeeccchHHHHHHhHhhhcCCCChhhHHHHHHHHHHHHHHHHhCCCCCeeEEEeCCCCcceeeeeeccceeEeeeh
Q 022342 89 IYPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIV 168 (298)
Q Consensus 89 ~~~~l~vl~~~~~l~~llt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~tp~g~~~~g~~~~~~i~~V~Il 168 (298)
...|++.++..-++..++|++||++|+..+|.|++|||+||.+||.+++||+.++.|+||+|.+|+|.++++.-|+|+|+
T Consensus 64 ~G~~lkll~~n~q~~el~ti~Rdkst~rsDF~F~ADRLiRLViEE~LNqLPytec~VtTPTG~kYEGikf~~GNCGVSi~ 143 (267)
T KOG1017|consen 64 YGSNLKLLECNSQVAELLTILRDKSTNRSDFVFNADRLIRLVIEECLNQLPYTECTVTTPTGFKYEGIKFNRGNCGVSIC 143 (267)
T ss_pred hhcccchhhhHHHHHHHHHHHhhccCcccceeecHHHHHHHHHHHHhhcCCccceeeecCCcceeeceeecCCCcceEEE
Confidence 34678888766689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H---HHHHHHHHhccCCccceEEEEecCCCCc-eeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEE
Q 022342 169 R---SMENALRACCKGIKIGKILIHRDGDNGK-QLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHII 244 (298)
Q Consensus 169 R---~m~~~~~~~~p~a~~g~i~i~R~~~t~~-~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~ 244 (298)
| +|++++|++|.+.++|+|+++.|++|.. +.+|+++|+|+..|.|+|+.|.+.||+|+++|++.|+++|+++++|+
T Consensus 144 RSGEAMEqgLRdCCRsIRIGKILi~sd~~t~~akV~YArfppDI~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~s~Ii 223 (267)
T KOG1017|consen 144 RSGEAMEQGLRDCCRSIRIGKILIGSDQNTHEAKVLYARFPPDITSRRVLLMYPIISTGNTVCKAVEVLKEHGVPDSNII 223 (267)
T ss_pred echHHHHHHHHHHHHHheeeeEEeccccccceeeEEEEecCCcccceeEEEEeeeecCCccHHHHHHHHHHcCCCcccEE
Confidence 9 9999999999999999999999999985 89999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCceeCCCCchhhhccCCC
Q 022342 245 FLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGTD 297 (298)
Q Consensus 245 vv~~vas~~gl~~l~~~~p~v~i~~a~id~~l~~~~~ivPGlGD~GdR~fgt~ 297 (298)
+++++++|-|.+.+.++||.++|++..+.+ .-| ..||..||||+
T Consensus 224 L~sLF~tP~gak~i~~~fP~itiltseihp-------vaP--nHFgqkYFGtd 267 (267)
T KOG1017|consen 224 LVSLFITPTGAKNITRKFPYITILTSEIHP-------VAP--NHFGQKYFGTD 267 (267)
T ss_pred EEEeeecchhhHHHHHhCCeEEEEeeccee-------cCc--ccccchhcCCC
Confidence 999999999999999999999999987766 345 57999999984
No 8
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.85 E-value=8.7e-22 Score=175.32 Aligned_cols=85 Identities=59% Similarity=1.030 Sum_probs=80.1
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHHhhh
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTK 80 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~ 80 (298)
+|+|||||||.|+|++||+.||+.+|||+++++++||..++||+|++||+|+|++||+|||.+..|.+|++.+...|...
T Consensus 128 ~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~qy~~~vkp~~~~fIeptk~~ADiiip~~~~n~vav~~l~~~I~~~ 207 (218)
T COG0572 128 MDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQYVKTVRPMYEQFIEPTKKYADIIIPSGGKNEVAVDLLQAKIASS 207 (218)
T ss_pred cCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHHHHHhhChhhhhccCcccccceEEeecCCcceeehhHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999988888876
Q ss_pred ccccc
Q 022342 81 LGQHD 85 (298)
Q Consensus 81 l~~~~ 85 (298)
+.++.
T Consensus 208 ~~~~~ 212 (218)
T COG0572 208 LSEQN 212 (218)
T ss_pred hhhhc
Confidence 55543
No 9
>PTZ00301 uridine kinase; Provisional
Probab=99.74 E-value=3.2e-18 Score=152.84 Aligned_cols=83 Identities=45% Similarity=0.724 Sum_probs=80.5
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHHhhh
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTK 80 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~ 80 (298)
+|++|||++|.|+|+.||+.||+.+||+++++++++|.++++|+|.+||+|+|.+||+||+++++|.++++.+.++|+..
T Consensus 127 ~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~~~~~~~v~~~~~~~I~p~k~~ADiIi~~~~~~~~~~~~~~~~~~~~ 206 (210)
T PTZ00301 127 MDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIEQYEATVRPMYYAYVEPSKVYADIIVPSWKDNSVAVGVLRAKLNHD 206 (210)
T ss_pred CCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHHHHHHHhhcccHHHHcCccccCCcEEEcCCCcchHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccc
Q 022342 81 LGQ 83 (298)
Q Consensus 81 l~~ 83 (298)
|++
T Consensus 207 ~~~ 209 (210)
T PTZ00301 207 LEN 209 (210)
T ss_pred ccC
Confidence 764
No 10
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.61 E-value=4e-16 Score=143.30 Aligned_cols=61 Identities=21% Similarity=0.421 Sum_probs=59.4
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecC
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPR 62 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~ 62 (298)
+|+|||||++.|+|++|||+||+.||||+.++|++||++++ |+|.+||+||+++|||+++.
T Consensus 141 ~DlkIfVd~~~dlr~irRI~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fqr 201 (277)
T cd02029 141 ADLLVGVVPIINLEWIQKIHRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQR 201 (277)
T ss_pred CCeEEEecCcHHHHHHHHHHhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEec
Confidence 69999999999999999999999999999999999999977 99999999999999999987
No 11
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.61 E-value=5.1e-16 Score=136.35 Aligned_cols=67 Identities=45% Similarity=0.902 Sum_probs=60.0
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCch
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHV 68 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~ 68 (298)
+|++||||+|.|+|+.||+.||+.+||++.++++++|. .++|+|.+||+|++++||+||+++.+|.+
T Consensus 127 ~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~~~~~~~-~~~~~~~~~I~p~~~~ADivi~~~~~~~~ 193 (194)
T PF00485_consen 127 FDLKIFLDADEDLRLERRIQRDVAERGRSPEEVIAQYE-RVRPGYERYIEPQKERADIVIPSGPTNDI 193 (194)
T ss_dssp -SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHHHHHHHH-THHHHHHHCTGGGGGG-SEEEESCTSSHH
T ss_pred ceeEEEecccHHHHHHHHhhhhccccCCcceeEEEEee-cCChhhhhheeccccccEEEECCCCCccc
Confidence 69999999999999999999999999999999999999 79999999999999999999999998864
No 12
>PLN02318 phosphoribulokinase/uridine kinase
Probab=99.59 E-value=8.1e-16 Score=153.91 Aligned_cols=85 Identities=24% Similarity=0.472 Sum_probs=79.8
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEe-----c-CCCCCchhH----
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVII-----P-RGGDNHVAI---- 70 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii-----~-~~~~~~~~~---- 70 (298)
+|++||||+|.|+||+||+.||+.+||++.++++++|.++++|+|.+||+|++++||+|| | ++.+|++++
T Consensus 177 lDlkIFVDtdvDirL~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~f~P~~g~~np~~Ilk~~ 256 (656)
T PLN02318 177 LDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYILKSS 256 (656)
T ss_pred CCEEEEEcCCccHHHHHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEecCCCCCCCCCCCeEEecCC
Confidence 699999999999999999999999999999999999999999999999999999999999 4 466788888
Q ss_pred -HHHHHHHhhhccccc
Q 022342 71 -DLIVQHIHTKLGQHD 85 (298)
Q Consensus 71 -~~i~~~i~~~l~~~~ 85 (298)
++.++||+..|.++.
T Consensus 257 ~~~~~~~i~~~L~~~~ 272 (656)
T PLN02318 257 RSVTVEQIKAVLSEDH 272 (656)
T ss_pred ccccHHHHHHHhhhcc
Confidence 899999999998764
No 13
>PRK15453 phosphoribulokinase; Provisional
Probab=99.54 E-value=4.9e-15 Score=137.03 Aligned_cols=61 Identities=21% Similarity=0.387 Sum_probs=58.7
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecC
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPR 62 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~ 62 (298)
+|+||||+++.|+|++|||+||+.||||+.|+|++||+++ .|+|.+||.||+++|||++..
T Consensus 147 ~DlkIfVdp~~dlr~irRI~RD~~ERGrs~EsVi~qilrr-mPdy~~yI~PQ~~~tdInfqr 207 (290)
T PRK15453 147 VDLLIGVVPIVNLEWIQKIHRDTSERGYSREAVMDTILRR-MPDYINYITPQFSRTHINFQR 207 (290)
T ss_pred CCeeEeeCCcHhHHHHHHHHhhhHhhCCCHHHHHHHHHHh-CChHhhhCCCCcccCcEEEEe
Confidence 6999999999999999999999999999999999999996 599999999999999999876
No 14
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.41 E-value=4.6e-13 Score=118.63 Aligned_cols=83 Identities=52% Similarity=0.890 Sum_probs=78.7
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHHhhh
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTK 80 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~ 80 (298)
+|++|||++|.++|+.|++.||..+||++.++++++|.+.++|.|..|++|.+++||+||+++.+|+.+++.+.++|...
T Consensus 126 ~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~~~~~~~~~~l~~~i~~~ 205 (209)
T PRK05480 126 MDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQYLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVAIDILKAKIRQL 205 (209)
T ss_pred hceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHHHHHHhhhhhHHhhccHhhcceeEEecCCCcchHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999888999999999999887
Q ss_pred ccc
Q 022342 81 LGQ 83 (298)
Q Consensus 81 l~~ 83 (298)
+.+
T Consensus 206 ~~~ 208 (209)
T PRK05480 206 LEK 208 (209)
T ss_pred hhc
Confidence 654
No 15
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=99.37 E-value=6.4e-12 Score=118.11 Aligned_cols=112 Identities=19% Similarity=0.226 Sum_probs=95.8
Q ss_pred cceeEeeehH---HHHHHHHHhccCCccceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHc
Q 022342 160 KKLCGVSIVR---SMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 236 (298)
Q Consensus 160 ~~i~~V~IlR---~m~~~~~~~~p~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~ 236 (298)
.++++|++.+ .+..++.+.+|+++.+.+..+|+..+... ..++|.+++|++|+|+|||++||+|+.+|++.|++.
T Consensus 151 ~~~vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R~~~~~~~--~~~~~~~v~g~~viivDDii~TG~Tl~~a~~~l~~~ 228 (302)
T PLN02369 151 PDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAE--VMNLIGDVKGKVAIMVDDMIDTAGTITKGAALLHQE 228 (302)
T ss_pred CceEEEEECcChHHHHHHHHHHcCCCCEEEEEEecCCcceee--eEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHhC
Confidence 4678999999 67889999999999999999997654322 236788999999999999999999999999999999
Q ss_pred CCCCccEEEEE--EEeCHHHHHHHHHhCCCcEEEEEeecCC
Q 022342 237 GVPESHIIFLN--LISAPEGIHCVCKRFPSLKIVTSEIDVA 275 (298)
Q Consensus 237 g~~~~~I~vv~--~vas~~gl~~l~~~~p~v~i~~a~id~~ 275 (298)
|+ ++|.+++ .+++++|++++.+...+--++|.+++..
T Consensus 229 Ga--~~v~~~~tH~v~~~~a~~~l~~~~~~~iv~t~ti~~~ 267 (302)
T PLN02369 229 GA--REVYACATHAVFSPPAIERLSSGLFQEVIVTNTIPVS 267 (302)
T ss_pred CC--CEEEEEEEeeeeCHHHHHHHHhCCCCEEEEeCCCCCh
Confidence 99 6899888 7999999999998777777777777543
No 16
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.33 E-value=3.6e-12 Score=112.97 Aligned_cols=81 Identities=56% Similarity=0.947 Sum_probs=77.9
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHHhhh
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTK 80 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~ 80 (298)
+|++|||++|.++|+.|++.||..+||++.++++.+|....+|.|..|++|++.+||+||+++++++.++..+.+.|+..
T Consensus 126 ~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~~~~~~~~~~~~~~i~~~~~~Ad~vi~~~~~~~~~~~~~~~~~~~~ 205 (207)
T TIGR00235 126 MDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQYRKTVRPMYEQFVEPTKQYADLIIPEGGRNEVAINVLDTKIKHL 205 (207)
T ss_pred CCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHHHHHHhhhhhHHHhCcccccccEEEEcCCCCchHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred c
Q 022342 81 L 81 (298)
Q Consensus 81 l 81 (298)
+
T Consensus 206 ~ 206 (207)
T TIGR00235 206 L 206 (207)
T ss_pred h
Confidence 4
No 17
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.32 E-value=3.7e-12 Score=111.81 Aligned_cols=79 Identities=75% Similarity=1.210 Sum_probs=75.2
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHHhh
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHT 79 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~ 79 (298)
+|++|||++|.++|+.||+.||..+||++.+++++.|....+|.|..|++|++++||+||+++++++.++..+.++++.
T Consensus 119 ~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~ii~~~~~~~~~~~~~~~~~~~ 197 (198)
T cd02023 119 MDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFVKPMHEQFIEPTKRYADVIIPRGGDNHVAIDLIVQHIKS 197 (198)
T ss_pred cCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHhhhhhHHHhCccchhceeEEECCCCCccHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999999999999999999999999999999999888999999988874
No 18
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.27 E-value=3e-12 Score=115.11 Aligned_cols=67 Identities=24% Similarity=0.429 Sum_probs=61.5
Q ss_pred CCeEEEEeCCchhH---HHhhhhcccccCCCCHHHHHHH----------------HHhhhhhHHHhhcccccccceEEec
Q 022342 1 MNMKIFVDTDADVR---LARRIRRDTVERGRDVDSVLEQ----------------YAKFVKPAFDDFVLPSKKYADVIIP 61 (298)
Q Consensus 1 ~d~kifvd~d~d~r---l~Rri~RD~~ergr~~~~v~~~----------------~~~~~~p~~~~~i~P~~~~ADiii~ 61 (298)
+|+|||||+|.|++ +.||..||+.+|||+..++++| |.+.++|++++||.|++++||+||+
T Consensus 129 ~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~ 208 (220)
T cd02025 129 FDFSIYVDADEDDIEKWYIKRFLKLRETAFSDPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILE 208 (220)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHHHHHHhCchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEE
Confidence 69999999999995 8888889999999999988875 7789999999999999999999999
Q ss_pred CCCCCc
Q 022342 62 RGGDNH 67 (298)
Q Consensus 62 ~~~~~~ 67 (298)
.+.++.
T Consensus 209 ~~~~~~ 214 (220)
T cd02025 209 KGADHS 214 (220)
T ss_pred eCCCCc
Confidence 987765
No 19
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.17 E-value=4.4e-10 Score=105.84 Aligned_cols=112 Identities=18% Similarity=0.227 Sum_probs=87.7
Q ss_pred cceeEeeehH---HHHHHHHHhccCCccceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHc
Q 022342 160 KKLCGVSIVR---SMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 236 (298)
Q Consensus 160 ~~i~~V~IlR---~m~~~~~~~~p~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~ 236 (298)
+++++|+... .+...+.+.+++++++++..+|+..+.....+.+++.+++||+|+|+|||++||+|+.+|++.|+++
T Consensus 148 ~~~vvVspd~Ga~~~a~~la~~L~~~~~~~i~k~R~~~~~~~~~~~~~~~dv~gr~viIVDDIi~TG~Tl~~aa~~Lk~~ 227 (304)
T PRK03092 148 DNVTVVSPDAGRVRVAEQWADRLGGAPLAFIHKTRDPTVPNQVVANRVVGDVEGRTCVLVDDMIDTGGTIAGAVRALKEA 227 (304)
T ss_pred CCcEEEEecCchHHHHHHHHHHcCCCCEEEEEEEcccCCCCceEEEecCcCCCCCEEEEEccccCcHHHHHHHHHHHHhc
Confidence 3566777776 3455666777768899999999866533334678888999999999999999999999999999999
Q ss_pred CCCCccEEEEEE--EeCHHHHHHHHHh-CCCcEEEEEeecC
Q 022342 237 GVPESHIIFLNL--ISAPEGIHCVCKR-FPSLKIVTSEIDV 274 (298)
Q Consensus 237 g~~~~~I~vv~~--vas~~gl~~l~~~-~p~v~i~~a~id~ 274 (298)
|+ ++|.+++. +.++++++++.+. .+ --++|-.++.
T Consensus 228 Ga--~~I~~~~tH~v~~~~a~~~l~~~~~~-~i~~t~tip~ 265 (304)
T PRK03092 228 GA--KDVIIAATHGVLSGPAAERLKNCGAR-EVVVTDTLPI 265 (304)
T ss_pred CC--CeEEEEEEcccCChHHHHHHHHCCCC-EEEEeeeecc
Confidence 99 68998884 9999999999876 33 2345555543
No 20
>PLN02348 phosphoribulokinase
Probab=99.16 E-value=3.1e-11 Score=116.43 Aligned_cols=61 Identities=38% Similarity=0.737 Sum_probs=58.5
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecC
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPR 62 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~ 62 (298)
+|++||||+|.++|+.||++||+.+||++.+++++++.. ++|+|.+||+|++++||+||+-
T Consensus 183 ~D~~IyVd~~~dvrl~RRI~RD~~eRG~S~EeV~~~i~a-r~pd~~~yI~pqk~~ADiVI~v 243 (395)
T PLN02348 183 LDFSIYLDISDDVKFAWKIQRDMAERGHSLESIKASIEA-RKPDFDAYIDPQKQYADVVIEV 243 (395)
T ss_pred CcEEEEEECCHHHHHHHHHHhhHhhcCCCHHHHHHHHHh-cCcchhhhcccccccCCEEEEe
Confidence 699999999999999999999999999999999999875 8999999999999999999976
No 21
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.14 E-value=2.9e-11 Score=105.28 Aligned_cols=60 Identities=22% Similarity=0.331 Sum_probs=52.3
Q ss_pred CCeEEEEeCCchh-HHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEec
Q 022342 1 MNMKIFVDTDADV-RLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIP 61 (298)
Q Consensus 1 ~d~kifvd~d~d~-rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~ 61 (298)
+|++|||++|.++ |+.||+.||+.+||++.++++++|. .+.+.+..|+.|++++||+|++
T Consensus 118 ~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~~-~~~~~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 118 LDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMWP-SVPSGEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred cCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhcc-cccCchhhcCCCchhccceecc
Confidence 5999999999998 9999999999999999999999964 3544444555889999999986
No 22
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.10 E-value=7.3e-10 Score=95.58 Aligned_cols=93 Identities=15% Similarity=0.286 Sum_probs=76.8
Q ss_pred ceeEeeehH---HHHHHHHHhcc-CCccceEEEE--ecC-CCC-ceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHH
Q 022342 161 KLCGVSIVR---SMENALRACCK-GIKIGKILIH--RDG-DNG-KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQL 232 (298)
Q Consensus 161 ~i~~V~IlR---~m~~~~~~~~p-~a~~g~i~i~--R~~-~t~-~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~ 232 (298)
++++|+|+| .+...+.+.++ .+.++++.+. ++. .+. ...++.++|.+++|++|+|+|||++||+|+.++++.
T Consensus 27 ~~vvv~i~~GG~~~a~~l~~~L~~~~~v~~i~~~~Y~~~~~~~~~~~~~~~~~~~~~gk~vlivDDii~TG~Tl~~~~~~ 106 (166)
T TIGR01203 27 PLVLLCVLKGSFPFFADLIRYIAVPVQVDFMAVSSYGNGMQSSGDVKILKDLDLSIKGKDVLIVEDIVDTGLTLQYLLDL 106 (166)
T ss_pred CeEEEEEccCCHHHHHHHHHhcCCCceeeEEEEeeccCCCcccCceEEecCCCCCCCCCEEEEEeeeeCcHHHHHHHHHH
Confidence 578899999 56778888887 5678888887 432 222 334567788899999999999999999999999999
Q ss_pred HHHcCCCCccEEEEEEEeCHHHH
Q 022342 233 LIEKGVPESHIIFLNLISAPEGI 255 (298)
Q Consensus 233 L~~~g~~~~~I~vv~~vas~~gl 255 (298)
|+++|+ ++|.++|++..+.+-
T Consensus 107 l~~~g~--~~i~~~~l~~k~~~~ 127 (166)
T TIGR01203 107 LKARKP--KSLKIVTLLDKPSRR 127 (166)
T ss_pred HHHCCC--CEEEEEEEEecCccC
Confidence 999998 689999999988773
No 23
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.04 E-value=3.5e-10 Score=99.76 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=69.5
Q ss_pred ccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCc
Q 022342 202 EKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFR 281 (298)
Q Consensus 202 ~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~~p~v~i~~a~id~~l~~~~~ 281 (298)
.+-+.++++++|||+|+++|||.||.+|++.++++|+ ++|+++++|++++..+.+.+..+ +++|..++..+-+.|+
T Consensus 116 ~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~--~~IviAVPV~p~~a~~~l~s~~D--~vvc~~~P~~F~AVg~ 191 (220)
T COG1926 116 GRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGP--KEIVIAVPVAPEDAAAELESEAD--EVVCLYMPAPFEAVGE 191 (220)
T ss_pred CCCCCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCC--ceEEEEcccCCHHHHHHHHhhcC--eEEEEcCCccHHHHHH
Confidence 4556689999999999999999999999999999999 78999999999999999999887 9999999888776654
Q ss_pred e
Q 022342 282 V 282 (298)
Q Consensus 282 i 282 (298)
.
T Consensus 192 ~ 192 (220)
T COG1926 192 F 192 (220)
T ss_pred H
Confidence 3
No 24
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.04 E-value=1.9e-10 Score=106.70 Aligned_cols=61 Identities=34% Similarity=0.738 Sum_probs=58.4
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecC
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPR 62 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~ 62 (298)
+|++|||++|.++|+.||++||+.+||++.+++.++|.. ++|.+++||+|++++||+||..
T Consensus 116 ~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~-r~~~~~~~I~P~~~~ADvVI~~ 176 (273)
T cd02026 116 LDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEA-RKPDFEAYIDPQKQYADVVIQV 176 (273)
T ss_pred ccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHh-hchhHHHHhccccccCcEEEEc
Confidence 599999999999999999999999999999999999876 8999999999999999999965
No 25
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=98.97 E-value=2.1e-09 Score=93.40 Aligned_cols=114 Identities=24% Similarity=0.382 Sum_probs=81.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHhCCCCCeeEEEeCCCCcceeeeeeccceeEeeehH---HHHHHHHHhccC-----Cccc
Q 022342 114 ISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVR---SMENALRACCKG-----IKIG 185 (298)
Q Consensus 114 T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~tp~g~~~~g~~~~~~i~~V~IlR---~m~~~~~~~~p~-----a~~g 185 (298)
.+..++...+.+|+..+... +.|. .++++|+|+| .+...+.+.++. ++++
T Consensus 7 ~s~~~i~~~i~~la~~i~~~-------------------~~~~---~~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~ 64 (176)
T PRK05205 7 LDAEALRRALTRIAHEIIER-------------------NKGL---DNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVG 64 (176)
T ss_pred CCHHHHHHHHHHHHHHHHHH-------------------cCCC---CCeEEEEEccCCHHHHHHHHHHHHHHcCCCCccc
Confidence 34567777777777665321 1111 2578889998 455666666642 3477
Q ss_pred eEE--EEecCCC--C--ceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEe
Q 022342 186 KIL--IHRDGDN--G--KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLIS 250 (298)
Q Consensus 186 ~i~--i~R~~~t--~--~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~va 250 (298)
++. .||+... + +...+.++|.+++|++|+|+||+++||+|+.++++.|++.|++ ++|.+++++.
T Consensus 65 ~l~~~~y~~~~~~~~~~~~~~~~~l~~~v~gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~-~~v~~avL~~ 134 (176)
T PRK05205 65 ELDITLYRDDLTKKGLHPQVKPTDIPFDIEGKRVILVDDVLYTGRTIRAALDALFDYGRP-ARVQLAVLVD 134 (176)
T ss_pred eEEEEEeecCccccCcccccccccCCCCCCCCEEEEEecccCcHHHHHHHHHHHHhcCCC-cEEEEEEEEE
Confidence 754 4566432 2 2345677888899999999999999999999999999999954 6899999876
No 26
>PRK07429 phosphoribulokinase; Provisional
Probab=98.95 E-value=7.5e-10 Score=105.21 Aligned_cols=62 Identities=29% Similarity=0.658 Sum_probs=58.8
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCC
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRG 63 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~ 63 (298)
+|++|||++|.++|+.||++||+.+||++.+++.+.+.+ ++|.+.+||.|++++||+||...
T Consensus 125 ~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~i~~-r~pd~~~yI~P~k~~ADiVI~~~ 186 (327)
T PRK07429 125 YDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAEIEA-REPDFEAYIRPQRQWADVVIQFL 186 (327)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHHHHH-hCccHhhhhcccccCCCEEEEcC
Confidence 699999999999999999999999999999999998775 89999999999999999999873
No 27
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.86 E-value=2.2e-08 Score=95.27 Aligned_cols=105 Identities=16% Similarity=0.243 Sum_probs=82.6
Q ss_pred cceeEeeehH---HHHHHHHHhccCCccceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHc
Q 022342 160 KKLCGVSIVR---SMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 236 (298)
Q Consensus 160 ~~i~~V~IlR---~m~~~~~~~~p~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~ 236 (298)
+++++|+.-. .....+.+.+++++.+.+.-+|+..+.. ....++.+++|++|+|+||+++||+|+.+|++.|+++
T Consensus 179 ~~~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~~~--~~~~~~~~v~g~~viiVDDii~TG~T~~~a~~~L~~~ 256 (330)
T PRK02812 179 EDIVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNVA--EVLNVIGDVKGKTAILVDDMIDTGGTICEGARLLRKE 256 (330)
T ss_pred CCeEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCcee--eeEeccccCCCCEEEEEccccCcHHHHHHHHHHHhcc
Confidence 4677777776 5667788888778888887777644321 2334566899999999999999999999999999999
Q ss_pred CCCCccEEEEE--EEeCHHHHHHHHHh-CCCcEEEEE
Q 022342 237 GVPESHIIFLN--LISAPEGIHCVCKR-FPSLKIVTS 270 (298)
Q Consensus 237 g~~~~~I~vv~--~vas~~gl~~l~~~-~p~v~i~~a 270 (298)
|+ ++|.+++ .++++++++++.+. .. +|+|.
T Consensus 257 Ga--~~v~~~~tH~v~s~~a~~~l~~~~id--~iv~t 289 (330)
T PRK02812 257 GA--KQVYACATHAVFSPPAIERLSSGLFE--EVIVT 289 (330)
T ss_pred CC--CeEEEEEEcccCChHHHHHHhhCCCC--EEEEe
Confidence 99 6899888 79999999999753 22 55554
No 28
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.84 E-value=2.2e-09 Score=100.42 Aligned_cols=66 Identities=23% Similarity=0.409 Sum_probs=54.6
Q ss_pred CCeEEEEeCCchhHHHhhhhcc--cccCC-CCHHH----------------HHHHHHhhhhhHHHhhcccccccceEEec
Q 022342 1 MNMKIFVDTDADVRLARRIRRD--TVERG-RDVDS----------------VLEQYAKFVKPAFDDFVLPSKKYADVIIP 61 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD--~~erg-r~~~~----------------v~~~~~~~~~p~~~~~i~P~~~~ADiii~ 61 (298)
||++||||+|+|+++.|++.|+ ..+|+ ++.++ .++.|.+..+|++.+||.|+|..||+||+
T Consensus 197 ~D~~IyvDa~~d~~~~w~i~R~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~ 276 (290)
T TIGR00554 197 VDFSIYVDAEEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILT 276 (290)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEe
Confidence 7999999999999999999995 44555 45444 34456999999999999999999999999
Q ss_pred CCCCC
Q 022342 62 RGGDN 66 (298)
Q Consensus 62 ~~~~~ 66 (298)
.+.+-
T Consensus 277 ~~~~h 281 (290)
T TIGR00554 277 KGANH 281 (290)
T ss_pred cCCCC
Confidence 76553
No 29
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.79 E-value=4.5e-08 Score=92.45 Aligned_cols=111 Identities=18% Similarity=0.172 Sum_probs=80.6
Q ss_pred cceeEeeehH---HHHHHHHHhccCCccceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHc
Q 022342 160 KKLCGVSIVR---SMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 236 (298)
Q Consensus 160 ~~i~~V~IlR---~m~~~~~~~~p~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~ 236 (298)
++.++|++.+ .....+.+.+ +++...+.-.|... +... -..+..+++|++|+|+||+++||+|+.+|++.|+++
T Consensus 158 ~~~vvv~pd~Gg~~~A~~la~~L-g~~~~~~~k~r~~~-~~~~-~~~~~~~~~g~~vliVDDii~TG~T~~~a~~~l~~~ 234 (309)
T PRK01259 158 ENLVVVSPDVGGVVRARALAKRL-DADLAIIDKRRPRA-NVSE-VMNIIGDVEGRDCILVDDMIDTAGTLCKAAEALKER 234 (309)
T ss_pred CCcEEEEECCCcHHHHHHHHHHh-CCCEEEEEeecccc-eeEE-EEeecccCCCCEEEEEecccCcHHHHHHHHHHHHcc
Confidence 4678888887 3334444444 34444333222211 1111 123445789999999999999999999999999999
Q ss_pred CCCCccEEEEEE--EeCHHHHHHHHHhCCCcEEEEEeecCC
Q 022342 237 GVPESHIIFLNL--ISAPEGIHCVCKRFPSLKIVTSEIDVA 275 (298)
Q Consensus 237 g~~~~~I~vv~~--vas~~gl~~l~~~~p~v~i~~a~id~~ 275 (298)
|+ ++|.+++. +.++++++++.+..++--++|.+++..
T Consensus 235 Ga--~~v~~~~tH~i~~~~a~~~l~~~~~~~iv~t~ti~~~ 273 (309)
T PRK01259 235 GA--KSVYAYATHPVLSGGAIERIENSVIDELVVTDSIPLS 273 (309)
T ss_pred CC--CEEEEEEEeeeCChHHHHHHhcCCCCEEEEecCcccc
Confidence 99 67888885 999999999998888888889888765
No 30
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=98.75 E-value=9.2e-08 Score=92.60 Aligned_cols=82 Identities=24% Similarity=0.381 Sum_probs=63.6
Q ss_pred CCccceEEEEecCCC-----CceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeC-HHH
Q 022342 181 GIKIGKILIHRDGDN-----GKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISA-PEG 254 (298)
Q Consensus 181 ~a~~g~i~i~R~~~t-----~~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas-~~g 254 (298)
+++.+.+--+|+..+ .+..++..++.+++||+|||+|||++||+|+..|++.|+++|+ ++|.++|..+. ++|
T Consensus 230 g~~~ai~~K~R~~~~~~~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA--~~V~~~~tH~vf~~a 307 (382)
T PRK06827 230 GVDLGLFYKRRDYSRVVNGRNPIVAHEFLGRDVEGKDVLIVDDMIASGGSMIDAAKELKSRGA--KKIIVAATFGFFTNG 307 (382)
T ss_pred CCCEEEEEcccCCcccccCCCceEEEecCCcccCCCEEEEEeCCcCcHHHHHHHHHHHHHcCC--CEEEEEEEeecChHH
Confidence 344444444454321 2345667777689999999999999999999999999999999 68999887653 499
Q ss_pred HHHHHHhCCC
Q 022342 255 IHCVCKRFPS 264 (298)
Q Consensus 255 l~~l~~~~p~ 264 (298)
++++.++|++
T Consensus 308 ~~~l~~~~~~ 317 (382)
T PRK06827 308 LEKFDKAYEE 317 (382)
T ss_pred HHHHHhhccc
Confidence 9999988754
No 31
>PRK05439 pantothenate kinase; Provisional
Probab=98.73 E-value=1.5e-08 Score=95.66 Aligned_cols=68 Identities=24% Similarity=0.431 Sum_probs=57.0
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccC---------------CCCHH----HHHHHHHhhhhhHHHhhcccccccceEEec
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVER---------------GRDVD----SVLEQYAKFVKPAFDDFVLPSKKYADVIIP 61 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~er---------------gr~~~----~v~~~~~~~~~p~~~~~i~P~~~~ADiii~ 61 (298)
||++||||+|.+++..|++.|+...| |.+.+ .+.++|.+..+|++++||.|+|.+||+||+
T Consensus 217 ~D~~IfVda~~~~~~~w~i~R~~~lr~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~ 296 (311)
T PRK05439 217 FDFSIYVDADEDLIEKWYIERFLKLRETAFSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILH 296 (311)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEe
Confidence 69999999999999998888887532 33333 566788899999999999999999999999
Q ss_pred CCCCCch
Q 022342 62 RGGDNHV 68 (298)
Q Consensus 62 ~~~~~~~ 68 (298)
.+.++.+
T Consensus 297 ~~~~h~i 303 (311)
T PRK05439 297 KGADHSI 303 (311)
T ss_pred CCCCCce
Confidence 9877753
No 32
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=98.72 E-value=1.9e-07 Score=88.22 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=78.7
Q ss_pred ceeEeeehH---HHHHHHHHhccCCccceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcC
Q 022342 161 KLCGVSIVR---SMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKG 237 (298)
Q Consensus 161 ~i~~V~IlR---~m~~~~~~~~p~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g 237 (298)
+.++|++.. .+...+.+.+ +++.+.+.-.|...++ ......++.+++|++|+|+||+++||+|+.++++.|++.|
T Consensus 160 ~~viv~pd~g~~~~A~~lA~~L-g~~~~~i~k~r~~~~~-~~~~~~~~~~v~g~~vliVDDii~tG~Tl~~a~~~l~~~g 237 (308)
T TIGR01251 160 NPVVVSPDAGGVERAKKVADAL-GCPLAIIDKRRISATN-EVEVMNLVGDVEGKDVVIVDDIIDTGGTIAKAAEILKSAG 237 (308)
T ss_pred CCEEEEECCchHHHHHHHHHHh-CCCEEEEEEEecCCCC-EEEEEecccccCCCEEEEEccccCCHHHHHHHHHHHHhcC
Confidence 456666665 3444444444 4666666666653332 2345567888999999999999999999999999999999
Q ss_pred CCCccEEEEE--EEeCHHHHHHHHHhCCCcEEEEEee
Q 022342 238 VPESHIIFLN--LISAPEGIHCVCKRFPSLKIVTSEI 272 (298)
Q Consensus 238 ~~~~~I~vv~--~vas~~gl~~l~~~~p~v~i~~a~i 272 (298)
+ ++|.+++ .+.++++++++.+...+--++|-.+
T Consensus 238 a--~~v~~~~th~v~~~~a~~~l~~~~~~~iv~tdt~ 272 (308)
T TIGR01251 238 A--KRVIAAATHGVFSGPAIERIANAGVEEVIVTNTI 272 (308)
T ss_pred C--CEEEEEEEeeecCcHHHHHHHhCCCCEEEEeCCC
Confidence 9 6899888 4679999999998744434444444
No 33
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=98.65 E-value=1.3e-07 Score=88.74 Aligned_cols=91 Identities=20% Similarity=0.279 Sum_probs=68.0
Q ss_pred CCccceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE--EEeCHHHHHHH
Q 022342 181 GIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN--LISAPEGIHCV 258 (298)
Q Consensus 181 ~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~--~vas~~gl~~l 258 (298)
++..+.|-=.|+ .+.....-..+-.+++||+|+|+|||++||||++.|.+.|+++|+ ++|+++| .+.+....+++
T Consensus 186 ~~~~a~i~K~R~-~~~~~v~~~~~~gdV~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GA--k~V~a~~tH~vfs~~a~~~l 262 (314)
T COG0462 186 GAPLAIIDKRRD-SSPNVVEVMNLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGA--KKVYAAATHGVFSGAALERL 262 (314)
T ss_pred CCCEEEEEEeec-CCCCeEEEeecccccCCCEEEEEeccccccHHHHHHHHHHHHCCC--CeEEEEEEchhhChHHHHHH
Confidence 334666666675 333334445566789999999999999999999999999999999 7899888 46678888888
Q ss_pred HHh-CCCcEEEEEeecCC
Q 022342 259 CKR-FPSLKIVTSEIDVA 275 (298)
Q Consensus 259 ~~~-~p~v~i~~a~id~~ 275 (298)
.+. .. =-|+|-.|...
T Consensus 263 ~~~~i~-~vivTnTi~~~ 279 (314)
T COG0462 263 EASAID-EVIVTDTIPLP 279 (314)
T ss_pred hcCCCC-EEEEeCCcccc
Confidence 765 33 23556566553
No 34
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.62 E-value=3.8e-07 Score=85.21 Aligned_cols=54 Identities=22% Similarity=0.409 Sum_probs=49.5
Q ss_pred CCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE--EEeCHHHHHHHHHh
Q 022342 206 NDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN--LISAPEGIHCVCKR 261 (298)
Q Consensus 206 ~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~--~vas~~gl~~l~~~ 261 (298)
.+++|++|+|+||+++||+|+.++.+.|+++|+ ++|.+++ .+.++++.+++.+.
T Consensus 200 ~~v~Gk~VlIVDDIi~TG~Tl~~aa~~Lk~~GA--~~V~~~~~H~i~~~~a~~~l~~~ 255 (285)
T PRK00934 200 LDVKGKDVLIVDDIISTGGTMATAIKILKEQGA--KKVYVACVHPVLVGDAILKLYNA 255 (285)
T ss_pred cccCCCEEEEEcCccccHHHHHHHHHHHHHCCC--CEEEEEEEeeccCcHHHHHHHhC
Confidence 368899999999999999999999999999999 6888888 48899999999876
No 35
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=98.51 E-value=3.4e-06 Score=73.71 Aligned_cols=117 Identities=14% Similarity=0.138 Sum_probs=77.8
Q ss_pred cCCCChhhHHHHHHHHHHHHHHHHhCCCCCeeEEEeCCCCcceeeeeeccceeEeeehH---HHHHHHHHhcc-CCccce
Q 022342 111 DRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVR---SMENALRACCK-GIKIGK 186 (298)
Q Consensus 111 d~~T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~tp~g~~~~g~~~~~~i~~V~IlR---~m~~~~~~~~p-~a~~g~ 186 (298)
+.--+..+|....++++..+.... .. +..++|+|.+ .+...+.+.+- ....+.
T Consensus 14 ~~~~s~~~i~~~i~~la~~i~~~~----~~-------------------~~~viV~i~~gg~~~A~~La~~l~~~~~~~~ 70 (181)
T PRK09162 14 DCLVSAAEVEAAIDRMADEITADL----AD-------------------ENPLVLCVMGGGLVFTGQLLPRLDFPLEFDY 70 (181)
T ss_pred cEeecHHHHHHHHHHHHHHHHHHc----CC-------------------CCeEEEEECCCcHHHHHHHHHHcCCCcccCE
Confidence 444566788888888888776542 10 1246677888 34444444442 123455
Q ss_pred EEEEecCCCC---ceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCH
Q 022342 187 ILIHRDGDNG---KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAP 252 (298)
Q Consensus 187 i~i~R~~~t~---~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~ 252 (298)
+...+...+. .......++.+++|++|+|+||++.||.|+.++++.|++.|+ ++|.++++.--+
T Consensus 71 l~~~~~~~~~~~~~~~~~~~~~~~v~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga--~~V~~avL~~k~ 137 (181)
T PRK09162 71 LHATRYRNETTGGELVWKVKPRESLKGRTVLVVDDILDEGHTLAAIRDRCLEMGA--AEVYSAVLVDKT 137 (181)
T ss_pred EEEEecCCCccCCceeEecCCCCCCCCCEEEEEccccCcHHHHHHHHHHHHhCCC--CEEEEEEEEEcC
Confidence 5555544322 112333445578999999999999999999999999999998 688888776543
No 36
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=98.50 E-value=3.7e-06 Score=73.45 Aligned_cols=118 Identities=16% Similarity=0.236 Sum_probs=82.4
Q ss_pred CChhhHHHHHHHHHHHHHHHHhCCCCCeeEEEeCCCCcceeeeeeccceeEeeehH---HHHHHHHHhcc-CCccceEEE
Q 022342 114 ISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVR---SMENALRACCK-GIKIGKILI 189 (298)
Q Consensus 114 T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~tp~g~~~~g~~~~~~i~~V~IlR---~m~~~~~~~~p-~a~~g~i~i 189 (298)
-+..++...+++|+..+.+.... . ..++++|+|+| .+..-+.+.+. ...++++.+
T Consensus 9 ~~~~~i~~~i~~lA~~I~~~~~~------------~---------~~~~vvvgI~~Gg~~fa~~L~~~L~~~~~v~~l~~ 67 (178)
T PRK15423 9 IPEAEIKARIAELGRQITERYKD------------S---------GSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTA 67 (178)
T ss_pred cCHHHHHHHHHHHHHHHHHHhcc------------c---------CCCeEEEEEecCChHHHHHHHHHhCCCcceeEEEE
Confidence 35667888888888877653211 0 12477899999 33444444443 245667776
Q ss_pred EecC-CC---CceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHH
Q 022342 190 HRDG-DN---GKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEG 254 (298)
Q Consensus 190 ~R~~-~t---~~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~g 254 (298)
.+-. .+ +.......++.+++||+|+|+|+++.||.|+.++.+.|+++|+ +.+.+++++--+.+
T Consensus 68 ssY~~~~~~~~~v~i~~~~~~~v~gk~VLlVDDIiDTG~TL~~l~~~l~~~~~--~~v~~avL~~K~~~ 134 (178)
T PRK15423 68 SSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREP--KSLAICTLLDKPSR 134 (178)
T ss_pred EEecCCCcccCceEEecCCCCCCCCCEEEEEeeecCchHHHHHHHHHHHhCCC--CEEEEEEEEECCCC
Confidence 6553 12 2222235566789999999999999999999999999999998 68989998876655
No 37
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.47 E-value=1.5e-06 Score=82.49 Aligned_cols=97 Identities=14% Similarity=0.131 Sum_probs=67.5
Q ss_pred ceeEeeehH---HHHHHHHHhccCCccceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcC
Q 022342 161 KLCGVSIVR---SMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKG 237 (298)
Q Consensus 161 ~i~~V~IlR---~m~~~~~~~~p~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g 237 (298)
++++|+..- .....+.+.+..++...+.=+|+..+... -..+..+++||+|+|+||++.||+|+.+|.+.|+++|
T Consensus 167 ~~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~~~~--~~~~~gdv~Gr~viIVDDIidTG~Tl~~aa~~Lk~~G 244 (319)
T PRK04923 167 NLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANVAT--VMNIIGDVQGKTCVLVDDLVDTAGTLCAAAAALKQRG 244 (319)
T ss_pred CCEEEEECCchHHHHHHHHHHcCCCCEEEeccccCCCCceE--EEecccCCCCCEEEEEecccCchHHHHHHHHHHHHCC
Confidence 455666554 23344444454345444444454332222 1234568999999999999999999999999999999
Q ss_pred CCCccEEEEE--EEeCHHHHHHHHHh
Q 022342 238 VPESHIIFLN--LISAPEGIHCVCKR 261 (298)
Q Consensus 238 ~~~~~I~vv~--~vas~~gl~~l~~~ 261 (298)
+ ++|.+++ .+.+.++.+++.+.
T Consensus 245 A--~~V~~~~THgvfs~~a~~~l~~s 268 (319)
T PRK04923 245 A--LKVVAYITHPVLSGPAVDNINNS 268 (319)
T ss_pred C--CEEEEEEECcccCchHHHHHhhC
Confidence 9 6788777 57889999999654
No 38
>PRK06696 uridine kinase; Validated
Probab=98.47 E-value=2.2e-07 Score=83.32 Aligned_cols=63 Identities=32% Similarity=0.435 Sum_probs=56.7
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccc--cccceEEecCCC
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPS--KKYADVIIPRGG 64 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~--~~~ADiii~~~~ 64 (298)
+|++|||++|.++++.|++.||..+||+ .+++...|.+...|+++.|+.+. +++||+||++..
T Consensus 147 ~d~~i~v~~~~e~~~~R~~~Rd~~~~g~-~~~~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 147 WDYKIFLDTDFEVSRRRGAKRDTEAFGS-YEEAEKMYLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred CCEEEEEECCHHHHHHHHHHhhhhhhCC-chHHHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 5899999999999999999999999996 56678888888999999997666 899999999865
No 39
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=98.45 E-value=5.8e-07 Score=72.58 Aligned_cols=49 Identities=31% Similarity=0.453 Sum_probs=41.9
Q ss_pred eEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEE
Q 022342 199 LIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLI 249 (298)
Q Consensus 199 ~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~v 249 (298)
..+...+..++|++|+|+||+++||+|+..+++.|++.|+ +.+.+++++
T Consensus 77 ~~~~~~~~~~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~--~~v~~~vl~ 125 (125)
T PF00156_consen 77 ELFIIDKEDIKGKRVLIVDDVIDTGGTLKEAIELLKEAGA--KVVGVAVLV 125 (125)
T ss_dssp EEEEEESSSGTTSEEEEEEEEESSSHHHHHHHHHHHHTTB--SEEEEEEEE
T ss_pred EEeecccccccceeEEEEeeeEcccHHHHHHHHHHHhCCC--cEEEEEEEC
Confidence 3445566688999999999999999999999999999998 677777764
No 40
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=98.39 E-value=3.8e-07 Score=79.66 Aligned_cols=70 Identities=17% Similarity=0.239 Sum_probs=51.7
Q ss_pred CCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE--EEeCHHHHHHHHHhCCCcEEEEEeecCC
Q 022342 204 LPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN--LISAPEGIHCVCKRFPSLKIVTSEIDVA 275 (298)
Q Consensus 204 lP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~--~vas~~gl~~l~~~~p~v~i~~a~id~~ 275 (298)
+-.+++||.+||+|||+.||+|+++|.+.|+++|+ ++|++++ .+.|.++.++|.+..=+=-++|-.|+.+
T Consensus 77 vVGDV~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA--~~V~~~aTHgvfs~~A~~~l~~s~Id~vvvTnTIp~~ 148 (184)
T PF14572_consen 77 VVGDVKGKICIIVDDIIDTGGTLIKAAELLKERGA--KKVYACATHGVFSGDAPERLEESPIDEVVVTNTIPQE 148 (184)
T ss_dssp EES--TTSEEEEEEEEESSTHHHHHHHHHHHHTTE--SEEEEEEEEE---TTHHHHHHHSSESEEEEETTS--H
T ss_pred EEEEccCCeEeeecccccchHHHHHHHHHHHHcCC--CEEEEEEeCcccCchHHHHHhhcCCeEEEEeccccCc
Confidence 44689999999999999999999999999999999 6888877 6888999999986421223566566553
No 41
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.38 E-value=3.8e-06 Score=79.81 Aligned_cols=56 Identities=14% Similarity=0.272 Sum_probs=49.9
Q ss_pred CCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE--EEeCHHHHHHHHHh
Q 022342 204 LPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN--LISAPEGIHCVCKR 261 (298)
Q Consensus 204 lP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~--~vas~~gl~~l~~~ 261 (298)
+-.+++||+|+|+||++.||+|+.+|.+.|+++|+ ++|.++| .+.+.++++++.+.
T Consensus 211 ~~gdv~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA--~~V~~~~tHglf~~~a~~~l~~~ 268 (320)
T PRK02269 211 IIGNVKGKKCILIDDMIDTAGTICHAADALAEAGA--TEVYASCTHPVLSGPALDNIQKS 268 (320)
T ss_pred eccccCCCEEEEEeeecCcHHHHHHHHHHHHHCCC--CEEEEEEECcccCchHHHHHHhC
Confidence 34578999999999999999999999999999999 6788777 58899999999764
No 42
>PRK08233 hypothetical protein; Provisional
Probab=98.37 E-value=1.1e-06 Score=75.37 Aligned_cols=80 Identities=28% Similarity=0.564 Sum_probs=65.1
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccC-CCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHHhh
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVER-GRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHT 79 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~er-gr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~ 79 (298)
+|+.||+++|.++++.|++.||..+. +.++...+..|...++|.|.+++++.+..||++|++ ...++.+.+.|.+
T Consensus 98 ~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~----~~~~e~i~~~i~~ 173 (182)
T PRK08233 98 IDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDG----ALSVEEIINQIEE 173 (182)
T ss_pred cCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcC----CCCHHHHHHHHHH
Confidence 58999999999999999999987543 335667788899999999999999999899999975 3456677777776
Q ss_pred hcccc
Q 022342 80 KLGQH 84 (298)
Q Consensus 80 ~l~~~ 84 (298)
.+..+
T Consensus 174 ~l~~~ 178 (182)
T PRK08233 174 ELYRR 178 (182)
T ss_pred HHHhC
Confidence 66544
No 43
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=98.36 E-value=4.1e-06 Score=75.04 Aligned_cols=121 Identities=13% Similarity=0.253 Sum_probs=84.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHhCCCCCeeEEEeCCCCcceeeeeeccceeEeeehH-H--HHHH-HHHh----ccCCccc
Q 022342 114 ISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVR-S--MENA-LRAC----CKGIKIG 185 (298)
Q Consensus 114 T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~tp~g~~~~g~~~~~~i~~V~IlR-~--m~~~-~~~~----~p~a~~g 185 (298)
.+..++...+++|+..+.+.--... +.+ .+++++|.||| | +..- .+.+ +| ..++
T Consensus 28 is~e~I~~~i~~LA~~I~~~~~~~~---------~~~--------~~~~vivgVlkGg~~fa~dL~r~L~~~~~~-~~vd 89 (211)
T PTZ00271 28 VTQEQVWAATAKCAKKIAEDYRSFK---------LTT--------ENPLYLLCVLKGSFIFTADLARFLADEGVP-VKVE 89 (211)
T ss_pred cCHHHHHHHHHHHHHHHHHHhhhcc---------ccC--------CCCeEEEEEcCCCHHHHHHHHHHhcccCCC-eeEE
Confidence 4677888888998888865421111 111 13677899999 2 2222 3333 33 5677
Q ss_pred eEEEEecC-C---CCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHH
Q 022342 186 KILIHRDG-D---NGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEG 254 (298)
Q Consensus 186 ~i~i~R~~-~---t~~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~g 254 (298)
++.+.+-. . ++.......++.+++||+|+|+|+++.||.|+.++++.|+++|+ ++|.+++++--+.+
T Consensus 90 fi~vssY~~~~~s~g~~~i~~~~~~~i~gk~VLIVDDIvDTG~TL~~v~~~l~~~~p--~svk~avL~dK~~~ 160 (211)
T PTZ00271 90 FICASSYGTGVETSGQVRMLLDVRDSVENRHILIVEDIVDSAITLQYLMRFMLAKKP--ASLKTVVLLDKPSG 160 (211)
T ss_pred EEEEEecCCCCcccCceEEecCCCCCCCCCEEEEEecccCCHHHHHHHHHHHHhcCC--CEEEEEEEEEcccC
Confidence 77665442 1 23222245667789999999999999999999999999999998 68999998877665
No 44
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.36 E-value=4.8e-06 Score=79.19 Aligned_cols=96 Identities=17% Similarity=0.222 Sum_probs=67.2
Q ss_pred cceeEeeehH---HHHHHHHHhccCCccceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHc
Q 022342 160 KKLCGVSIVR---SMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 236 (298)
Q Consensus 160 ~~i~~V~IlR---~m~~~~~~~~p~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~ 236 (298)
.++++|+... .....+.+.+ +++...+.-.|.... .. -..+..+++||+|+|+||++.||+|++.|.+.|+++
T Consensus 169 ~~~vvV~pd~Ga~~~A~~la~~L-~~~~~~~~~~r~~~~-~~--~~~i~gdV~gk~viIVDDIidTG~Tl~~aa~~Lk~~ 244 (323)
T PRK02458 169 SDVVVVSPKNSGIKRARSLAEYL-DAPIAIIDYAQDDSE-RE--EGYIIGDVAGKKAILIDDILNTGKTFAEAAKIVERE 244 (323)
T ss_pred CceEEEEECCChHHHHHHHHHHh-CCCEEEEEEecCCCc-ce--eeccccccCCCEEEEEcceeCcHHHHHHHHHHHHhC
Confidence 3567777665 2334444444 344443443332211 11 123556899999999999999999999999999999
Q ss_pred CCCCccEEEEE--EEeCHHHHHHHHHh
Q 022342 237 GVPESHIIFLN--LISAPEGIHCVCKR 261 (298)
Q Consensus 237 g~~~~~I~vv~--~vas~~gl~~l~~~ 261 (298)
|+ ++|.+++ .+.+.++.+++.+.
T Consensus 245 GA--~~V~~~~tHgif~~~a~~~l~~s 269 (323)
T PRK02458 245 GA--TEIYAVASHGLFAGGAAEVLENA 269 (323)
T ss_pred CC--CcEEEEEEChhcCchHHHHHhhC
Confidence 99 6788887 57888999999775
No 45
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.34 E-value=5e-06 Score=70.95 Aligned_cols=121 Identities=24% Similarity=0.374 Sum_probs=78.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHhCCCCCeeEEEeCCCCcceeeeeeccceeEeeehHHHHHHHHHhc-cCCccce--EEEE
Q 022342 114 ISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSMENALRACC-KGIKIGK--ILIH 190 (298)
Q Consensus 114 T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~tp~g~~~~g~~~~~~i~~V~IlR~m~~~~~~~~-p~a~~g~--i~i~ 190 (298)
.+..++++...||+.-++|.--..- +. ..-|. +--+|++...+.+-+.++- -++++|. |..|
T Consensus 7 ld~~~i~RtitRia~eIiErnk~~~---~~--------vlvGI----ktrGv~lA~rl~~~i~~~Eg~~vp~g~lDIt~y 71 (179)
T COG2065 7 LDEAAIRRTITRIAHEIIERNKGLD---NL--------VLVGI----KTRGVPLAERLAERIEELEGIEVPVGELDITLY 71 (179)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCC---ce--------EEEeE----ecCCHHHHHHHHHHHHHHhCCCCCeeeEEeEEe
Confidence 3567888999999888887532211 00 01111 1223333332222222211 1455665 5667
Q ss_pred ecCCCC-----ceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEe
Q 022342 191 RDGDNG-----KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLIS 250 (298)
Q Consensus 191 R~~~t~-----~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~va 250 (298)
||.-+. +...-..+|.+++||.|||+|++|.||.|+.+|++.|.++|-| +.|-++++|-
T Consensus 72 RDDl~~~~~~~p~~~~t~~~~di~~k~VILVDDVLytGRTIRAAldal~d~GRP-a~I~LavLVD 135 (179)
T COG2065 72 RDDLTQKGPLRPQAKTTILPFDITGKRVILVDDVLYTGRTIRAALDALVDYGRP-AKIQLAVLVD 135 (179)
T ss_pred echhhhcCccCCcccCccCcccccCCEEEEEeeecccCccHHHHHHHHHhcCCc-ceEEEEEEEc
Confidence 986542 2233466777899999999999999999999999999999987 7999999875
No 46
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=98.27 E-value=1.5e-05 Score=75.04 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=48.7
Q ss_pred CCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE--EEeCHHHHHHHHHh
Q 022342 206 NDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN--LISAPEGIHCVCKR 261 (298)
Q Consensus 206 ~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~--~vas~~gl~~l~~~ 261 (298)
.+++|++|+|+||++.||+|+..|.+.|++.|+ ++|.+++ .+.+.++.+++.+.
T Consensus 207 ~~v~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA--~~V~~~~tHgvfs~~a~~~l~~~ 262 (301)
T PRK07199 207 APWAGRTPVLVDDIVSTGRTLIEAARQLRAAGA--ASPDCVVVHALFAGDAYSALAAA 262 (301)
T ss_pred cccCCCEEEEEecccCcHHHHHHHHHHHHHCCC--cEEEEEEEeeeCChHHHHHHHhC
Confidence 468999999999999999999999999999999 6788888 57899999999764
No 47
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=98.26 E-value=7.2e-06 Score=74.81 Aligned_cols=116 Identities=15% Similarity=0.145 Sum_probs=78.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhCCCCCeeEEEeCCCCcceeeeeeccceeEeeehH-H--HHHHHHHhcc---------
Q 022342 113 GISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVR-S--MENALRACCK--------- 180 (298)
Q Consensus 113 ~T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~tp~g~~~~g~~~~~~i~~V~IlR-~--m~~~~~~~~p--------- 180 (298)
=-+..+.+..++||+..+.+.-- + +++++|.||+ | +..-+.+.+.
T Consensus 57 Lis~~~I~~rI~~LA~~I~~dy~--------------~---------~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~ 113 (241)
T PTZ00149 57 LLPNGLIKDRVEKLAYDIKQVYG--------------N---------EELHILCILKGSRGFFSALVDYLNRIHNYSSTE 113 (241)
T ss_pred EeCHHHHHHHHHHHHHHHHHHcC--------------C---------CCeEEEEECCCCHHHHHHHHHHHhhhhhccccc
Confidence 35667788888888877754320 1 2577889999 2 2222222222
Q ss_pred -CCcc---ceEEEE--ecCC-CCc-eeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCH
Q 022342 181 -GIKI---GKILIH--RDGD-NGK-QLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAP 252 (298)
Q Consensus 181 -~a~~---g~i~i~--R~~~-t~~-~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~ 252 (298)
..++ +++.+. ++.. +++ +.. ...-.+++|++|+|+||++.||.|+.++++.|++.|+ ++|.+++++..+
T Consensus 114 ~~~~~~~~dfi~vsSY~~~~s~g~v~i~-~~~~~~l~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~--~~V~va~L~~K~ 190 (241)
T PTZ00149 114 SPKPPYQEHYVRVKSYCNDESTGKLEIV-SDDLSCLKDKHVLIVEDIIDTGNTLVKFCEYLKKFEP--KTIRIATLFEKR 190 (241)
T ss_pred cCcccccccEEEEEEccCCCcCCceEEe-cccccccCCCEEEEEEeEeChHHHHHHHHHHHHhcCC--CEEEEEEEEecC
Confidence 1223 777665 4332 233 232 3333478999999999999999999999999999998 789999988776
Q ss_pred HH
Q 022342 253 EG 254 (298)
Q Consensus 253 ~g 254 (298)
.+
T Consensus 191 ~~ 192 (241)
T PTZ00149 191 TP 192 (241)
T ss_pred cc
Confidence 54
No 48
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.24 E-value=9.5e-06 Score=77.46 Aligned_cols=56 Identities=14% Similarity=0.291 Sum_probs=49.7
Q ss_pred CCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE--EEeCHHHHHHHHHh
Q 022342 204 LPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN--LISAPEGIHCVCKR 261 (298)
Q Consensus 204 lP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~--~vas~~gl~~l~~~ 261 (298)
+..+++|++|+|+||++.||+|+.+|.+.|++.|+ ++|.+++ .+.+.++.+++.++
T Consensus 212 ~~gdv~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA--~~V~~~atHglf~~~a~~~l~~~ 269 (332)
T PRK00553 212 VLGEVKNKNCLIVDDMIDTGGTVIAAAKLLKKQKA--KKVCVMATHGLFNKNAIQLFDEA 269 (332)
T ss_pred eeccCCCCEEEEEeccccchHHHHHHHHHHHHcCC--cEEEEEEEeeecCchHHHHHHhc
Confidence 34578999999999999999999999999999999 6788777 58899999999764
No 49
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=98.22 E-value=1.2e-05 Score=70.78 Aligned_cols=116 Identities=19% Similarity=0.284 Sum_probs=74.8
Q ss_pred CChhhHHHHHHHHHHHHHHHHhCCCCCeeEEEeCCCCcceeeeeeccceeEeeehH---HHHHHHHHhcc----CCccce
Q 022342 114 ISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVR---SMENALRACCK----GIKIGK 186 (298)
Q Consensus 114 T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~tp~g~~~~g~~~~~~i~~V~IlR---~m~~~~~~~~p----~a~~g~ 186 (298)
.+..+++..+.+|+..+.+. .. + .+.++|.|+| .+...+.+.+. ...+.+
T Consensus 12 is~~~I~~~i~~lA~~I~~~----~~---------------~----~~~vivgi~~Gg~~fa~~L~~~L~~~~~~~~i~f 68 (189)
T PLN02238 12 WTAEDISARVAELAAQIASD----YA---------------G----KSPVVLGVATGAFMFLADLVRAIQPLPRGLTVDF 68 (189)
T ss_pred cCHHHHHHHHHHHHHHHHHH----cC---------------C----CCcEEEEEccCCHHHHHHHHHHhCccCCCeEEEE
Confidence 34556777777766666432 11 0 1356788888 23333333332 233445
Q ss_pred EEEEecCC-C---C-ceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHH
Q 022342 187 ILIHRDGD-N---G-KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEG 254 (298)
Q Consensus 187 i~i~R~~~-t---~-~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~g 254 (298)
+-..+-.. + + .+.....++.+++|++|+|+|+++.||.|+.++++.|++.|+ +.|.+++++.-+..
T Consensus 69 i~~~sy~~~~~~~g~~~i~~~~~~~~v~gk~VliVDDIidTG~Tl~~~~~~l~~~g~--~~v~~avL~dK~~~ 139 (189)
T PLN02238 69 IRASSYGGGTESSGVAKVSGADLKIDVKGKHVLLVEDIVDTGNTLSALVAHLEAKGA--ASVSVCALLDKRAR 139 (189)
T ss_pred EEeeecCCCccccCceeEecCCCCCCCCCCEEEEEecccchHHHHHHHHHHHHhCCC--CEEEEEEEEECCcc
Confidence 55444321 1 2 223333566689999999999999999999999999999999 68888888776643
No 50
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=98.19 E-value=4.9e-06 Score=71.80 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=46.1
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE--EEeCHHHHHHHHHhCCCcEEEE
Q 022342 207 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN--LISAPEGIHCVCKRFPSLKIVT 269 (298)
Q Consensus 207 ~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~--~vas~~gl~~l~~~~p~v~i~~ 269 (298)
..+|++|+|+||+++||+|+.++++.|++.|+. .+.+++ -.++++|.+++.+. +.+++
T Consensus 106 ~~~gk~VLIVDDIitTG~Tl~~a~~~L~~~Ga~--~v~~~~l~~~~~~~g~~~i~~~---~~~~s 165 (169)
T TIGR01090 106 IKPGQRVLIVDDLLATGGTAEATDELIRKLGGE--VVEAAFLIELKDLNGRAKLEPN---VPVFS 165 (169)
T ss_pred cCCcCEEEEEeccccchHHHHHHHHHHHHcCCE--EEEEEEEEEccccChHHHhccC---CceEE
Confidence 458899999999999999999999999999994 344444 34566899999775 44544
No 51
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=98.18 E-value=1.1e-05 Score=79.31 Aligned_cols=58 Identities=14% Similarity=0.245 Sum_probs=51.2
Q ss_pred ccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE--EEeCHHHHHHHHHh
Q 022342 202 EKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN--LISAPEGIHCVCKR 261 (298)
Q Consensus 202 ~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~--~vas~~gl~~l~~~ 261 (298)
..+..+++|++|||+|||+.||+|++.|.+.|++.|+ ++|.+++ .+.+.++.+++.+.
T Consensus 327 ~~lvgdV~Gk~vIIVDDIIdTG~Tl~~aa~~Lk~~GA--~~V~~~~THglfs~~A~~rl~~s 386 (439)
T PTZ00145 327 MDLVGNVYDSDVIIVDDMIDTSGTLCEAAKQLKKHGA--RRVFAFATHGLFSGPAIERIEAS 386 (439)
T ss_pred EeccCCCCCCEEEEEcceeCcHHHHHHHHHHHHHcCC--CEEEEEEEcccCChhHHHHHhcC
Confidence 3345689999999999999999999999999999999 6888887 47889999999664
No 52
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.18 E-value=2.3e-06 Score=77.13 Aligned_cols=64 Identities=20% Similarity=0.298 Sum_probs=57.3
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCC
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDN 66 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~ 66 (298)
+|++|||++|.++++.|.+.|+. ++|++.+++.+.|.+...|.+ .|++|.++.||+||++++..
T Consensus 161 ~D~vi~v~~~~~~~~~R~~~R~~-~~g~s~~~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~~~~ 224 (229)
T PRK09270 161 FDFTIFLDAPAEVLRERLVARKL-AGGLSPEAAEAFVLRNDGPNA-RLVLETSRPADLVLEMTATG 224 (229)
T ss_pred CCEEEEEECCHHHHHHHHHHHHH-hcCCCHHHHHHHHHhcChHHH-HHHHhcCCCCCEEEEecCCc
Confidence 48999999999999999999975 799999999999987778877 79999999999999986543
No 53
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=98.07 E-value=1.1e-05 Score=76.66 Aligned_cols=55 Identities=15% Similarity=0.245 Sum_probs=49.8
Q ss_pred CCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE--EEeCHHHHHHHHH
Q 022342 204 LPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN--LISAPEGIHCVCK 260 (298)
Q Consensus 204 lP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~--~vas~~gl~~l~~ 260 (298)
+..+++||+|+|+||++.||+|+..+.+.|++.|+ ++|.+++ .+.+.++.+++.+
T Consensus 224 ~~~dv~gr~vlIVDDIidTG~Tl~~aa~~L~~~Ga--~~V~~~~THglfs~~a~~~l~~ 280 (326)
T PLN02297 224 KEGNPAGRHVVIVDDLVQSGGTLIECQKVLAAHGA--AKVSAYVTHGVFPNESWERFTH 280 (326)
T ss_pred cccccCCCeEEEEecccCcHHHHHHHHHHHHHCCC--cEEEEEEECcccChhHHHHHHh
Confidence 45578999999999999999999999999999999 6788777 5889999999986
No 54
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=98.05 E-value=3.1e-05 Score=67.13 Aligned_cols=51 Identities=29% Similarity=0.346 Sum_probs=44.2
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHH--HHHHHH
Q 022342 207 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPE--GIHCVC 259 (298)
Q Consensus 207 ~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~--gl~~l~ 259 (298)
..+|++|+|+||++.||+|+.++++.|++.|+ +.+-+++++..++ |.+++.
T Consensus 111 ~~~g~~VLIVDDivtTG~Tl~~~~~~l~~~Ga--~~v~v~vl~~~~~~~g~~~l~ 163 (175)
T PRK02304 111 IKPGDRVLIVDDLLATGGTLEAAIKLLERLGA--EVVGAAFVIELPDLGGREKLE 163 (175)
T ss_pred cCCCCEEEEEeCCccccHHHHHHHHHHHHcCC--EEEEEEEEEEcccccchhhcC
Confidence 37899999999999999999999999999998 5677777777665 788876
No 55
>PLN02293 adenine phosphoribosyltransferase
Probab=97.98 E-value=1.3e-05 Score=70.54 Aligned_cols=49 Identities=29% Similarity=0.408 Sum_probs=43.3
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHH--HHHHHH
Q 022342 209 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPE--GIHCVC 259 (298)
Q Consensus 209 ~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~--gl~~l~ 259 (298)
.|++|+|+||+++||+|+.++++.|++.|+ +.+.+++++..++ |.+++.
T Consensus 124 ~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga--~~v~~~~~~~~~~~~g~~~l~ 174 (187)
T PLN02293 124 PGERALVIDDLIATGGTLCAAINLLERAGA--EVVECACVIELPELKGREKLN 174 (187)
T ss_pred CCCEEEEEeccccchHHHHHHHHHHHHCCC--EEEEEEEEEEcCCccHHHHhc
Confidence 689999999999999999999999999999 5677777777554 999985
No 56
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.87 E-value=0.00014 Score=62.88 Aligned_cols=93 Identities=23% Similarity=0.407 Sum_probs=68.1
Q ss_pred cceeEeeehH---H-HHHHHHHhccCCccceEEEEe--cCCCC--ceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHH
Q 022342 160 KKLCGVSIVR---S-MENALRACCKGIKIGKILIHR--DGDNG--KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQ 231 (298)
Q Consensus 160 ~~i~~V~IlR---~-m~~~~~~~~p~a~~g~i~i~R--~~~t~--~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~ 231 (298)
+++.+|.||+ . |.+-++++--...+-++.+.+ +..+. ...-...+-.+++||+|+|+|+++.||.|+....+
T Consensus 35 ~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdVLiVeDIiDsG~TLs~i~~ 114 (178)
T COG0634 35 KDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDVLIVEDIIDSGLTLSKVRD 114 (178)
T ss_pred CceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEecccccCCCCCeEEEEecccccChhHHHHHH
Confidence 4688899999 2 333444433355566666553 33322 23345566778999999999999999999999999
Q ss_pred HHHHcCCCCccEEEEEEEeCHHH
Q 022342 232 LLIEKGVPESHIIFLNLISAPEG 254 (298)
Q Consensus 232 ~L~~~g~~~~~I~vv~~vas~~g 254 (298)
.|+.+|+ +++.+++++--+++
T Consensus 115 ~l~~r~a--~sv~i~tLldK~~~ 135 (178)
T COG0634 115 LLKERGA--KSVRIATLLDKPER 135 (178)
T ss_pred HHHhCCC--CeEEEEEEeeCccc
Confidence 9999999 78999998776654
No 57
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=97.85 E-value=0.00013 Score=64.71 Aligned_cols=50 Identities=18% Similarity=0.422 Sum_probs=40.4
Q ss_pred CCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHH
Q 022342 206 NDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCV 258 (298)
Q Consensus 206 ~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l 258 (298)
..++|++|+|+||+++||+|+.++++.|++.|+ +.+.+++ +....|.+++
T Consensus 136 ~~~~gk~VlIVDDVitTG~Tl~~ai~~l~~~Ga--~~v~v~v-lvdk~g~~~~ 185 (200)
T PRK02277 136 ASVEGKRCVIVDDVITSGTTMKETIEYLKEHGG--KPVAVVV-LIDKSGIDEI 185 (200)
T ss_pred ccCCcCEEEEEeeccCchHHHHHHHHHHHHcCC--EEEEEEE-EEECcchhhh
Confidence 457899999999999999999999999999998 3444555 4445577655
No 58
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=97.83 E-value=0.00022 Score=63.26 Aligned_cols=59 Identities=15% Similarity=0.281 Sum_probs=46.0
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCCcEEE
Q 022342 207 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIV 268 (298)
Q Consensus 207 ~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~~p~v~i~ 268 (298)
...|++|+|+||+++||+|+.++++.|++.|+ +.+-+++++--.++.++..+.+ ++.++
T Consensus 110 ~~~g~~VliVDDvi~tG~Tl~~~~~~l~~~Ga--~~v~~~vlv~~~~~~~~~~~~~-g~~~~ 168 (202)
T PRK00455 110 RLFGKRVLVVEDVITTGGSVLEAVEAIRAAGA--EVVGVAVIVDRQSAAQEVFADA-GVPLI 168 (202)
T ss_pred CCCCCEEEEEecccCCcHHHHHHHHHHHHcCC--EEEEEEEEEECcchHHHHHHhc-CCcEE
Confidence 35699999999999999999999999999998 5677777777755555555544 34443
No 59
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=97.78 E-value=0.00011 Score=63.64 Aligned_cols=60 Identities=17% Similarity=0.275 Sum_probs=46.5
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHH--HHHHHHHhCCCcEEEE
Q 022342 207 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPE--GIHCVCKRFPSLKIVT 269 (298)
Q Consensus 207 ~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~--gl~~l~~~~p~v~i~~ 269 (298)
...|++|+|+||+++||+|+.+|++.|++.|+ +-+-+++++--.+ |-+++.+.+ ++.++.
T Consensus 105 ~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga--~v~~~~vlvdr~~~~~~~~l~~~~-gv~~~s 166 (173)
T TIGR00336 105 LLEGDKVVVVEDVITTGTSILEAVEIIQAAGG--QVAGVIIAVDRQERSAGQEFEKEY-GLPVIS 166 (173)
T ss_pred CCCCCEEEEEeccccChHHHHHHHHHHHHcCC--eEEEEEEEEecCchhHHHHHHHhc-CCeEEE
Confidence 34789999999999999999999999999998 3455666666544 778886643 455554
No 60
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=97.69 E-value=0.00015 Score=62.85 Aligned_cols=59 Identities=20% Similarity=0.328 Sum_probs=43.3
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCCcEEE
Q 022342 207 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIV 268 (298)
Q Consensus 207 ~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~~p~v~i~ 268 (298)
+++|++|+|+||+++||+|+.++++.|++.|+. =+-+++++--.+|..+..+.+ ++.+.
T Consensus 101 ~~~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~--v~~~~~~vdr~~g~~~~l~~~-gv~~~ 159 (170)
T PRK13811 101 DVKGKRVLLVEDVTTSGGSALYGIEQLRAAGAV--VDDVVTVVDREQGAEELLAEL-GITLT 159 (170)
T ss_pred ccCCCEEEEEEecccccHHHHHHHHHHHHCCCe--EEEEEEEEECCccHHHHHHhc-CCcEE
Confidence 468999999999999999999999999999983 344555666555644433433 34443
No 61
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=97.67 E-value=0.00012 Score=68.01 Aligned_cols=91 Identities=21% Similarity=0.199 Sum_probs=66.7
Q ss_pred cCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE--EEeCHHHHHHHHHhCCCcEEEEEeecC--CCCC
Q 022342 203 KLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN--LISAPEGIHCVCKRFPSLKIVTSEIDV--ALNE 278 (298)
Q Consensus 203 klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~--~vas~~gl~~l~~~~p~v~i~~a~id~--~l~~ 278 (298)
-|-.|++|+.+||+|||+.|+||++.|-+.|.++|+ ++|+..+ .|.+..+++++.+..-+-.+++..+.. ..-.
T Consensus 207 ~LVGDv~gkvailVDDm~dt~GTl~~aa~~L~~~GA--~kV~a~~THgVfs~~a~er~~~s~~~~~vvtnt~p~~~~~~~ 284 (316)
T KOG1448|consen 207 VLVGDVKGKVAILVDDMADTCGTLIKAADKLLEHGA--KKVYAIVTHGVFSGPAIERLNESALDRVVVTNTIPIDDSCLE 284 (316)
T ss_pred EEEeccCCcEEEEecccccccchHHHHHHHHHhcCC--ceEEEEEcceeccccHHHHhhhcccceEEEEEeecccccccC
Confidence 355689999999999999999999999999999999 5677666 699999999998874444455554443 3322
Q ss_pred CC----ceeCCCCchhhhccC
Q 022342 279 EF----RVIPGLGEFGDRYFG 295 (298)
Q Consensus 279 ~~----~ivPGlGD~GdR~fg 295 (298)
.. -+.|=++.+--|..+
T Consensus 285 ~~~~~Idvs~~~ae~irr~h~ 305 (316)
T KOG1448|consen 285 PKLTTIDVSPVLAEAIRRTHN 305 (316)
T ss_pred CcccEEeeccccchheEEecC
Confidence 11 234555566555544
No 62
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=97.66 E-value=0.0002 Score=62.93 Aligned_cols=46 Identities=20% Similarity=0.259 Sum_probs=39.8
Q ss_pred CCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHH
Q 022342 208 ISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGI 255 (298)
Q Consensus 208 i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl 255 (298)
.+|++|+|+||+++||+|+.++++.|+++|+ +.+.+++++.-.+|-
T Consensus 103 ~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga--~vv~~~vlid~~~~~ 148 (187)
T TIGR01367 103 KPGEKFVAVEDVVTTGGSLLEAIRAIEGQGG--QVVGLACIIDRSQGG 148 (187)
T ss_pred CCCCEEEEEEeeecchHHHHHHHHHHHHcCC--eEEEEEEEEECcCCC
Confidence 3689999999999999999999999999999 567777777766554
No 63
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=97.62 E-value=0.00016 Score=63.58 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=41.4
Q ss_pred CCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCH--HHHHHHHHh
Q 022342 208 ISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAP--EGIHCVCKR 261 (298)
Q Consensus 208 i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~--~gl~~l~~~ 261 (298)
.+|++|+|+||+++||+|+.++++.|++.|+ +-+-+++++--. .|.+++.+.
T Consensus 112 ~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa--~vv~v~~vvd~~~~~g~~~l~~~ 165 (187)
T PRK12560 112 EKGDRVAIIDDTLSTGGTVIALIKAIENSGG--IVSDVICVIEKTQNNGRKKLFTQ 165 (187)
T ss_pred CCcCEEEEEEeccccCHHHHHHHHHHHHCCC--EEEEEEEEEEecccchHHHHhhc
Confidence 4789999999999999999999999999998 344455555543 567777544
No 64
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=97.60 E-value=6.1e-05 Score=65.65 Aligned_cols=49 Identities=14% Similarity=0.250 Sum_probs=40.6
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHH
Q 022342 207 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHC 257 (298)
Q Consensus 207 ~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~ 257 (298)
.++|++|+|+||.++||+|+.++++.|++.|+ +.+-+++++.-.+.-++
T Consensus 117 ~~~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA--~~V~~~~v~~~~~~~~~ 165 (178)
T PRK07322 117 KLKGKRVAIVDDVVSTGGTLTALERLVERAGG--QVVAKAAIFAEGDASNR 165 (178)
T ss_pred ccCCCEEEEEeccccccHHHHHHHHHHHHcCC--EEEEEEEEEEcCCCCCC
Confidence 47899999999999999999999999999998 45777777765554333
No 65
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=97.56 E-value=0.00025 Score=61.82 Aligned_cols=57 Identities=23% Similarity=0.349 Sum_probs=41.1
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHH-HHHHHhCCCcEEEE
Q 022342 209 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGI-HCVCKRFPSLKIVT 269 (298)
Q Consensus 209 ~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl-~~l~~~~p~v~i~~ 269 (298)
+|++|+|+||+++||+|+.++++.|++.|+. -+-+++++--.+|- +++ +.+ ++.++.
T Consensus 106 ~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~--vv~~~vlvdr~~~~~~~l-~~~-g~~v~s 163 (176)
T PRK13812 106 EGEEVVVLEDIATTGQSAVDAVEALREAGAT--VNRVLVVVDREEGARENL-ADH-DVELEA 163 (176)
T ss_pred CcCEEEEEEEeeCCCHHHHHHHHHHHHCCCe--EEEEEEEEECCcchHHHH-Hhc-CCcEEE
Confidence 7899999999999999999999999999982 34444455544443 444 332 454444
No 66
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=97.55 E-value=0.00013 Score=63.95 Aligned_cols=40 Identities=28% Similarity=0.536 Sum_probs=36.5
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEE
Q 022342 207 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNL 248 (298)
Q Consensus 207 ~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~ 248 (298)
.+.+++|+|+||++.||+|+.++.+.|++.|+ +.|.++++
T Consensus 149 ~~~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga--~~V~~~~l 188 (190)
T TIGR00201 149 SFQGRNIVLVDDVVTTGATLHEIARLLLELGA--ASVQVWTL 188 (190)
T ss_pred CCCCCEEEEEeeeeccHHHHHHHHHHHHHcCC--CEEEEEEE
Confidence 47899999999999999999999999999999 57877775
No 67
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.54 E-value=0.00018 Score=59.12 Aligned_cols=62 Identities=23% Similarity=0.402 Sum_probs=53.8
Q ss_pred CCeEEEEeCCchhHHHhhhhccccc-CCCCHHHHHHHHHhhhhhHHHhhcccccc-cceEEecC
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVE-RGRDVDSVLEQYAKFVKPAFDDFVLPSKK-YADVIIPR 62 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~e-rgr~~~~v~~~~~~~~~p~~~~~i~P~~~-~ADiii~~ 62 (298)
.|+.||+++|.++|..|+..|+... +|.+.+++.+++.+.-++.+..|..|++. .-|++|+.
T Consensus 83 ~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dl~i~~ 146 (147)
T cd02020 83 ADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAPLKLAEDAIVIDT 146 (147)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcccccccCCCCcEEEeC
Confidence 4799999999999999999999542 37899999999999889999999999984 45698875
No 68
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=97.53 E-value=0.00015 Score=72.29 Aligned_cols=46 Identities=20% Similarity=0.415 Sum_probs=38.9
Q ss_pred EeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE
Q 022342 200 IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN 247 (298)
Q Consensus 200 ~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~ 247 (298)
.+...+..++||+|+|+||+++||+|+.++++.|++.|+. +|.+++
T Consensus 343 k~~~~~~~v~gk~VlLVDD~ItTGtTl~~~~~~Lr~aGAk--~V~~~~ 388 (469)
T PRK05793 343 KLNPLKVNVEGKRVVLIDDSIVRGTTSKRLVELLRKAGAK--EVHFRV 388 (469)
T ss_pred ecccCccccCCCEEEEEccccCchHHHHHHHHHHHHcCCC--EEEEEE
Confidence 3455556789999999999999999999999999999994 566555
No 69
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=97.48 E-value=0.00013 Score=72.38 Aligned_cols=66 Identities=11% Similarity=0.248 Sum_probs=49.6
Q ss_pred ccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE--EEeCHHHHHHHHHhCCCc-EEEEEe
Q 022342 202 EKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN--LISAPEGIHCVCKRFPSL-KIVTSE 271 (298)
Q Consensus 202 ~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~--~vas~~gl~~l~~~~p~v-~i~~a~ 271 (298)
...+..++||+|+|+||+++||+|+.++++.|++.|+ ++|.+++ ++.+......+. .|.+ ++++..
T Consensus 332 ~~~~~~v~gK~VlLVDDvitTG~Tl~~a~~~Lr~aGA--~~V~v~~~hp~~~~~~~~~i~--~~~~~~li~~~ 400 (445)
T PRK08525 332 NPMSKVLEGKRIVVIDDSIVRGTTSKKIVSLLRAAGA--KEIHLRIACPEIKFPCYYGID--TPTFEELISAN 400 (445)
T ss_pred cccccccCCCeEEEEecccCcHHHHHHHHHHHHhcCC--CEEEEEEECCCcCCchhhhCc--CCChhhEEEcC
Confidence 3444458999999999999999999999999999999 4566655 555666666663 3444 365543
No 70
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=97.48 E-value=0.00013 Score=62.20 Aligned_cols=47 Identities=26% Similarity=0.351 Sum_probs=38.3
Q ss_pred CcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEE--eCHHHHHHH
Q 022342 210 ERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLI--SAPEGIHCV 258 (298)
Q Consensus 210 ~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~v--as~~gl~~l 258 (298)
|.+|+++||.+|||||+++|.+.|.+.|+ +=+-++|++ .+-+|-++|
T Consensus 122 g~rvvvVDDllATGGTl~AA~~Ll~r~ga--~vvE~~~vieL~~LkGr~kL 170 (183)
T KOG1712|consen 122 GQRVVVVDDLLATGGTLAAATELLERVGA--EVVECACVIELPELKGREKL 170 (183)
T ss_pred CCeEEEEechhhcCccHHHHHHHHHHhcc--EEEEEEEEEEccccCCcccc
Confidence 78999999999999999999999999998 344466653 455676666
No 71
>PRK06031 phosphoribosyltransferase; Provisional
Probab=97.46 E-value=0.00049 Score=62.64 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=41.2
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHH-HHHHHHhCC
Q 022342 207 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEG-IHCVCKRFP 263 (298)
Q Consensus 207 ~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~g-l~~l~~~~p 263 (298)
.++|++|+|+||+++||+|+.++++.|++.|+. -+-+++++.-.++ -+++.+.-|
T Consensus 151 ~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga~--Vvgv~v~v~~g~~~~~~l~~~~~ 206 (233)
T PRK06031 151 LLEGRRVALIDDVISSGASIVAGLRLLAACGIE--PAGIGAAMLQSERWRESLAAAGP 206 (233)
T ss_pred cCCCCEEEEEEeEccccHHHHHHHHHHHHcCCe--EEEEEEEEEccccHHHHHHhcCC
Confidence 568999999999999999999999999999983 3334444444444 445555443
No 72
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=97.44 E-value=0.00036 Score=63.71 Aligned_cols=53 Identities=21% Similarity=0.338 Sum_probs=42.8
Q ss_pred CCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHH-HHHHHHHhC
Q 022342 208 ISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPE-GIHCVCKRF 262 (298)
Q Consensus 208 i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~-gl~~l~~~~ 262 (298)
.+|++|+|+||+++||+|+.++++.+++.|+ +-+-+++++...+ |.+++.+.+
T Consensus 174 ~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga--~vvgv~vlv~~~~~~~~~l~~~~ 227 (238)
T PRK08558 174 KKGDRVLIVDDIIRSGETQRALLDLARQAGA--DVVGVFFLIAVGEVGIDRAREET 227 (238)
T ss_pred CCcCEEEEEecccccCHHHHHHHHHHHHcCC--EEEEEEEEEecCchHHHHHhHhc
Confidence 4789999999999999999999999999998 2344555566544 488888754
No 73
>PRK11595 DNA utilization protein GntX; Provisional
Probab=97.43 E-value=0.00025 Score=64.13 Aligned_cols=42 Identities=24% Similarity=0.449 Sum_probs=37.7
Q ss_pred CCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEE
Q 022342 206 NDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLI 249 (298)
Q Consensus 206 ~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~v 249 (298)
.+++|++|+|+||++.||.|+..+.+.|++.|+ ++|.++++-
T Consensus 183 ~~~~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~--~~V~~~~la 224 (227)
T PRK11595 183 LPVQGQHMAIVDDVVTTGSTVAEIAQLLLRNGA--ASVQVWCLC 224 (227)
T ss_pred CCCCCCEEEEEeeeecchHHHHHHHHHHHHcCC--cEEEEEEEE
Confidence 357899999999999999999999999999998 678887764
No 74
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=97.41 E-value=0.00047 Score=61.61 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=39.4
Q ss_pred CCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCH-HHHHHHHH
Q 022342 208 ISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAP-EGIHCVCK 260 (298)
Q Consensus 208 i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~-~gl~~l~~ 260 (298)
.+|++|+|+||+++||+|+.++++.|++.|+ +-+.+++++--. .|.+++.+
T Consensus 116 ~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~--~vv~v~vlvdr~~~~~~~l~~ 167 (206)
T PRK13809 116 TPGQTCLVINDMVSSGKSIIETAVALEEEGL--VVREALVFLDRQKGACQPLGP 167 (206)
T ss_pred CCCCEEEEEEeccccCHHHHHHHHHHHHCCC--EEEEEEEEEECcccHHHHHHh
Confidence 4789999999999999999999999999998 334444454433 45666644
No 75
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=97.37 E-value=0.0006 Score=60.21 Aligned_cols=50 Identities=20% Similarity=0.307 Sum_probs=39.1
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCH--HHHHHHHH
Q 022342 209 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAP--EGIHCVCK 260 (298)
Q Consensus 209 ~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~--~gl~~l~~ 260 (298)
+|++|+|+||.++||+|+.++++.+++.|+. =+-+++++--. .|-+++.+
T Consensus 116 ~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~--Vvgv~~lvd~~~~~g~~~l~~ 167 (191)
T TIGR01744 116 DQDRVLIIDDFLANGQAAHGLVDIAKQAGAK--IAGIGIVIEKSFQNGRQELVE 167 (191)
T ss_pred CcCEEEEEEehhccChHHHHHHHHHHHCCCE--EEEEEEEEEecCccHHHHHHh
Confidence 6899999999999999999999999999983 23344444433 57777754
No 76
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=97.35 E-value=0.00061 Score=59.96 Aligned_cols=57 Identities=23% Similarity=0.418 Sum_probs=41.1
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHH-HHHHHHhCCCcEEEE
Q 022342 209 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEG-IHCVCKRFPSLKIVT 269 (298)
Q Consensus 209 ~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~g-l~~l~~~~p~v~i~~ 269 (298)
.|++|+|+||+++||+|+.++++.+++.|+. =+-+++++--.+| -+++ +.+ ++++..
T Consensus 121 ~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~--V~~v~vlvdr~~g~~~~l-~~~-gi~~~s 178 (187)
T PRK13810 121 PEDRIVMLEDVTTSGGSVREAIEVVREAGAY--IKYVITVVDREEGAEENL-KEA-DVELVP 178 (187)
T ss_pred CcCEEEEEEeccCCChHHHHHHHHHHHCCCE--EEEEEEEEECCcChHHHH-HHc-CCcEEE
Confidence 6899999999999999999999999999982 2334445544444 4555 333 344443
No 77
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=97.34 E-value=0.00069 Score=59.72 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=38.9
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCH--HHHHHHHH
Q 022342 209 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAP--EGIHCVCK 260 (298)
Q Consensus 209 ~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~--~gl~~l~~ 260 (298)
+|++|+|+||.++||+|+.++++.+++.|+. =+-+++++--. .|-+++.+
T Consensus 116 ~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~--vvgv~~lvd~~~~~g~~~l~~ 167 (189)
T PRK09219 116 EGDRVLIIDDFLANGQAALGLIDIIEQAGAK--VAGIGIVIEKSFQDGRKLLEE 167 (189)
T ss_pred CCCEEEEEeehhhcChHHHHHHHHHHHCCCE--EEEEEEEEEccCccHHHHHHh
Confidence 6899999999999999999999999999983 23344444332 47777744
No 78
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=97.29 E-value=0.00047 Score=62.40 Aligned_cols=47 Identities=40% Similarity=0.637 Sum_probs=39.2
Q ss_pred CCCCCCC-cEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCH
Q 022342 204 LPNDISE-RHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAP 252 (298)
Q Consensus 204 lP~~i~~-~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~ 252 (298)
+++.... ++|+|+||++.||.|+..+.+.|++.|+ ++|.+.++.-++
T Consensus 177 ~~~~~~~~~~vlLvDDV~TTGaTl~~~~~~L~~~Ga--~~v~~~~lar~~ 224 (225)
T COG1040 177 LKKGIEEPKNVLLVDDVYTTGATLKEAAKLLREAGA--KRVFVLTLARAP 224 (225)
T ss_pred cCCCCCCCCeEEEEecccccHHHHHHHHHHHHHcCC--ceEEEEEEEecC
Confidence 3333444 8999999999999999999999999998 789888876543
No 79
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.18 E-value=0.0013 Score=58.41 Aligned_cols=52 Identities=23% Similarity=0.370 Sum_probs=44.0
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhC
Q 022342 209 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRF 262 (298)
Q Consensus 209 ~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~~ 262 (298)
+|++|+++||++.||+|+..|++.|++.|+. =.-++|++--.+|.+...+++
T Consensus 111 ~G~kVvvVEDViTTG~Si~eai~~l~~~G~~--V~gv~~ivDR~~~~~~~~~~~ 162 (201)
T COG0461 111 KGEKVVVVEDVITTGGSILEAVEALREAGAE--VVGVAVIVDRQSGAKEVLKEY 162 (201)
T ss_pred CCCEEEEEEecccCCHhHHHHHHHHHHcCCe--EEEEEEEEecchhHHHHHHhc
Confidence 6999999999999999999999999999983 344666677768888877754
No 80
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=97.10 E-value=0.00078 Score=67.80 Aligned_cols=43 Identities=23% Similarity=0.492 Sum_probs=37.7
Q ss_pred CCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEE
Q 022342 204 LPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNL 248 (298)
Q Consensus 204 lP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~ 248 (298)
.+..++||+|+|+||++.||.|+.++++.|++.|+ ++|.+++.
T Consensus 352 ~~~~v~gK~VlLVDDvitTGaTl~~~~~~L~~aGA--~~V~v~v~ 394 (501)
T PRK09246 352 IRAEFKGKNVLLVDDSIVRGTTSEQIVQMAREAGA--KKVYFASA 394 (501)
T ss_pred ccccccCCeEEEEeccccccHHHHHHHHHHHHcCC--CEEEEEEE
Confidence 35568999999999999999999999999999999 56776663
No 81
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=97.08 E-value=0.0027 Score=54.18 Aligned_cols=41 Identities=20% Similarity=0.371 Sum_probs=33.5
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHH
Q 022342 207 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEG 254 (298)
Q Consensus 207 ~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~g 254 (298)
..+|++|+|+|+++.||+|+..+.+.+.+ +.++++..-+.+
T Consensus 81 ~~~gk~VLIVDDIiDTG~Tl~~v~~~l~~-------v~~a~l~~K~~~ 121 (156)
T PRK09177 81 EGDGEGFLVVDDLVDTGGTARAVREMYPK-------AHFATVYAKPAG 121 (156)
T ss_pred CcCcCEEEEEeeeeCCHHHHHHHHHHHhh-------CCEEEEEECcCC
Confidence 46899999999999999999999999853 556776665544
No 82
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=97.08 E-value=0.00089 Score=66.35 Aligned_cols=45 Identities=16% Similarity=0.338 Sum_probs=37.6
Q ss_pred eccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE
Q 022342 201 YEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN 247 (298)
Q Consensus 201 y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~ 247 (298)
+..+...++||+|+|+||++.||.|+.++++.|++.|+. +|.+..
T Consensus 325 ~~~~~~~v~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk--~V~~~~ 369 (442)
T PRK08341 325 LSPVREVINGKRVVLVDDSIVRGTTMKRIVKMLRDAGAR--EVHVRI 369 (442)
T ss_pred ecccccccCCCEEEEEeeeeccHHHHHHHHHHHHhcCCc--EEEEEE
Confidence 444556688999999999999999999999999999994 455443
No 83
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=96.98 E-value=0.0013 Score=65.88 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=37.4
Q ss_pred CCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEE
Q 022342 204 LPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNL 248 (298)
Q Consensus 204 lP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~ 248 (298)
....++|++|+|+||++.||.|+.++++.|++.|+. .|.+++.
T Consensus 344 ~~~~~~gk~vllVDDvittG~T~~~~~~~L~~~Ga~--~v~~~~~ 386 (484)
T PRK07272 344 VSGVVKGKRVVMVDDSIVRGTTSRRIVQLLKEAGAK--EVHVAIA 386 (484)
T ss_pred cccccCCCEEEEEccccCchHHHHHHHHHHHhcCCc--EEEEEEe
Confidence 456788999999999999999999999999999994 5666654
No 84
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=96.96 E-value=0.0028 Score=55.33 Aligned_cols=39 Identities=31% Similarity=0.474 Sum_probs=33.4
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEe
Q 022342 209 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLIS 250 (298)
Q Consensus 209 ~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~va 250 (298)
+|++|+|+||.+|||||+.+.++.+.+.|+ .+.-++++.
T Consensus 115 ~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga---~vvg~~~~i 153 (179)
T COG0503 115 PGDRVLIVDDLLATGGTALALIELLEQAGA---EVVGAAFVI 153 (179)
T ss_pred CCCEEEEEecchhcChHHHHHHHHHHHCCC---EEEEEEEEE
Confidence 689999999999999999999999999998 455555444
No 85
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=96.93 E-value=0.0013 Score=56.95 Aligned_cols=57 Identities=16% Similarity=0.334 Sum_probs=47.8
Q ss_pred EeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHH
Q 022342 200 IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVC 259 (298)
Q Consensus 200 ~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~ 259 (298)
.+.+-...++||.++++||++.||.|+..+|+.|++.|.+ =+++++++.+.|+..+.
T Consensus 131 ~iS~NFa~V~gK~cvIVDDvittG~Ti~E~Ie~lke~g~k---pv~v~VL~dK~G~dei~ 187 (203)
T COG0856 131 SISSNFASVEGKRCVIVDDVITTGSTIKETIEQLKEEGGK---PVLVVVLADKKGVDEIE 187 (203)
T ss_pred eeecccccccCceEEEEecccccChhHHHHHHHHHHcCCC---cEEEEEEEccCCccccc
Confidence 3444445788999999999999999999999999999984 35777889999988773
No 86
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=96.88 E-value=0.0019 Score=64.71 Aligned_cols=45 Identities=18% Similarity=0.319 Sum_probs=37.9
Q ss_pred eccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE
Q 022342 201 YEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN 247 (298)
Q Consensus 201 y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~ 247 (298)
+......++||+|+|+||++.||.|+.++++.|++.|+ ++|.+++
T Consensus 351 ~~~~~~~~~gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga--~~v~~~~ 395 (479)
T PRK09123 351 HNANRAVIEGKRVVLVDDSIVRGTTSRKIVQMLRDAGA--KEVHLRI 395 (479)
T ss_pred ecccccccCCCEEEEEeceeCchHHHHHHHHHHHHcCC--CEEEEEE
Confidence 33344458899999999999999999999999999999 5676655
No 87
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=96.84 E-value=0.0033 Score=55.69 Aligned_cols=55 Identities=27% Similarity=0.473 Sum_probs=44.5
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCC
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGD 65 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~ 65 (298)
+|..|||++|.++|+.|-..| +|.+.+++...+.....+.+. +..||+||+|++.
T Consensus 126 ~D~vi~V~a~~e~ri~Rl~~R----~g~s~e~~~~ri~~Q~~~~~k------~~~ad~vI~N~g~ 180 (200)
T PRK14734 126 MDLVVVVDVDVEERVRRLVEK----RGLDEDDARRRIAAQIPDDVR------LKAADIVVDNNGT 180 (200)
T ss_pred CCeEEEEECCHHHHHHHHHHc----CCCCHHHHHHHHHhcCCHHHH------HHhCCEEEECcCC
Confidence 589999999999999888887 489999999988875555332 4899999987554
No 88
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.77 E-value=0.0029 Score=55.78 Aligned_cols=65 Identities=23% Similarity=0.352 Sum_probs=47.6
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHHhh
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHT 79 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~ 79 (298)
+|..+||++|.++|+.|.+.|| |.+.++....... ..| +++.+..||+||+|++ .++.+.+.+..
T Consensus 126 ~D~ii~V~a~~e~r~~Rl~~R~----g~s~e~~~~ri~~-Q~~-----~~~k~~~aD~vI~N~g----~~e~l~~qv~~ 190 (195)
T PRK14730 126 CSEIWVVDCSPEQQLQRLIKRD----GLTEEEAEARINA-QWP-----LEEKVKLADVVLDNSG----DLEKLYQQVDQ 190 (195)
T ss_pred CCEEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHh-CCC-----HHHHHhhCCEEEECCC----CHHHHHHHHHH
Confidence 6899999999999999999997 7787777766544 223 3466789999998743 34455444443
No 89
>PLN02440 amidophosphoribosyltransferase
Probab=96.75 E-value=0.0024 Score=64.01 Aligned_cols=41 Identities=15% Similarity=0.367 Sum_probs=36.1
Q ss_pred CCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEE
Q 022342 206 NDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNL 248 (298)
Q Consensus 206 ~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~ 248 (298)
..++||+|+|+||++.||.|+.++++.|++.|+ ++|.+++.
T Consensus 336 ~~v~gk~VlLVDDiittGtTl~~i~~~L~~aGa--~~V~v~v~ 376 (479)
T PLN02440 336 SVLEGKRVVVVDDSIVRGTTSSKIVRMLREAGA--KEVHMRIA 376 (479)
T ss_pred ccccCceEEEEeceeCcHHHHHHHHHHHHhcCC--CEEEEEEE
Confidence 458999999999999999999999999999999 46665554
No 90
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=96.70 E-value=0.0036 Score=58.12 Aligned_cols=49 Identities=22% Similarity=0.180 Sum_probs=39.2
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHH
Q 022342 209 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVC 259 (298)
Q Consensus 209 ~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~ 259 (298)
+|++|+|+||.++||+|+.++++.+++.|+. =+-+++++...+|-+++.
T Consensus 193 ~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~--VvGv~vlve~~~~~~~l~ 241 (268)
T TIGR01743 193 TGSKVLIIDDFMKAGGTINGMINLLDEFDAE--VAGIGVLIDNEGVDEKLV 241 (268)
T ss_pred CcCEEEEEeeecccCHHHHHHHHHHHHCCCE--EEEEEEEEECCCChHHcC
Confidence 5899999999999999999999999999982 233555666666656653
No 91
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=96.66 E-value=0.0034 Score=55.47 Aligned_cols=55 Identities=29% Similarity=0.409 Sum_probs=44.8
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCC
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGD 65 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~ 65 (298)
+|..+||++|.++|+.|.+.|| |.+.+++...+... . .+++.++.||+||.|+++
T Consensus 122 ~D~vi~V~a~~e~r~~RL~~R~----g~s~e~a~~ri~~Q-~-----~~~~k~~~aD~vI~N~~~ 176 (196)
T PRK14732 122 CDATVTVDSDPEESILRTISRD----GMKKEDVLARIASQ-L-----PITEKLKRADYIVRNDGN 176 (196)
T ss_pred CCEEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHHc-C-----CHHHHHHhCCEEEECCCC
Confidence 6899999999999999999995 77888888876652 2 356678999999998553
No 92
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=96.64 E-value=0.0017 Score=65.28 Aligned_cols=47 Identities=15% Similarity=0.419 Sum_probs=37.9
Q ss_pred eccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE
Q 022342 201 YEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN 247 (298)
Q Consensus 201 y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~ 247 (298)
++.+...++||+|+|+||++.||.|+.++++.|++.|+.+-.+.+.|
T Consensus 368 l~~~~~~~~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~i~s 414 (500)
T PRK07349 368 LNPLKDVLAGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRISS 414 (500)
T ss_pred eeccccccCCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEEeCC
Confidence 34445667899999999999999999999999999999543444444
No 93
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=96.61 E-value=0.0027 Score=54.82 Aligned_cols=55 Identities=16% Similarity=0.290 Sum_probs=45.5
Q ss_pred CCCc-eeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEe
Q 022342 194 DNGK-QLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLIS 250 (298)
Q Consensus 194 ~t~~-~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~va 250 (298)
+|+. +..-......++||.|+|+++++.||.|+.+-+..+++.++ +.+.+++++.
T Consensus 108 stg~iqiig~d~l~~ltgK~VliVeDIvdTGrTl~~Lls~~~~~k~--~~v~vasLL~ 163 (216)
T KOG3367|consen 108 STGDIQIIGGDDLSTLTGKNVLIVEDIVDTGRTLSTLLSHMKAYKP--SMVKVASLLV 163 (216)
T ss_pred ccCCceeecCCCHHHhcCCcEEEEEeeccccchHHHHHHHHHhcCc--cceeeeeecc
Confidence 3453 44444455689999999999999999999999999999999 7888888765
No 94
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=96.60 E-value=0.0085 Score=52.98 Aligned_cols=80 Identities=19% Similarity=0.226 Sum_probs=52.3
Q ss_pred ceeEeeehH-HH--HHHHHHhccCCccceEEEEecCCCC----ceeEeccCCCC-CCCcEEEEEcCcccchHHHHHHHHH
Q 022342 161 KLCGVSIVR-SM--ENALRACCKGIKIGKILIHRDGDNG----KQLIYEKLPND-ISERHVLLLDPVLATGNSANQAIQL 232 (298)
Q Consensus 161 ~i~~V~IlR-~m--~~~~~~~~p~a~~g~i~i~R~~~t~----~~~~y~klP~~-i~~~~Vil~Dp~lATG~t~~~ai~~ 232 (298)
+=++|.|.| || ..-+..++--.++..+.+..=.+++ ........+-+ +.|++|+|+|++..||.|+..|.+.
T Consensus 30 PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~~~~~~~~~~~v~~~~~~d~l~GkkVLIVDDI~DTG~Tl~~a~~~ 109 (192)
T COG2236 30 PDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDETAERDGEAKVKYPITIDPLSGKKVLIVDDIVDTGETLELALEE 109 (192)
T ss_pred CCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEehhhcccCCcceeecCccccccCCCeEEEEecccCchHhHHHHHHH
Confidence 345677788 33 2344455544455555555444443 12223334445 8999999999999999999999999
Q ss_pred HHHcCCCC
Q 022342 233 LIEKGVPE 240 (298)
Q Consensus 233 L~~~g~~~ 240 (298)
|++..+.+
T Consensus 110 l~~~~p~e 117 (192)
T COG2236 110 LKKLAPAE 117 (192)
T ss_pred HHhhCchh
Confidence 99955543
No 95
>PRK09213 pur operon repressor; Provisional
Probab=96.56 E-value=0.0062 Score=56.64 Aligned_cols=47 Identities=23% Similarity=0.334 Sum_probs=38.1
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEE-EEEEEeCHHHHHHH
Q 022342 209 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHII-FLNLISAPEGIHCV 258 (298)
Q Consensus 209 ~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~-vv~~vas~~gl~~l 258 (298)
.|.+|+|+||.++||+|+.++++.+++.|+ ++. +++++...+|-+++
T Consensus 195 ~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga---~VvGv~vlVd~~~~~~~l 242 (271)
T PRK09213 195 EGSRVLIVDDFMKAGGTINGMISLLKEFDA---EVVGIGVLVETKEPEERL 242 (271)
T ss_pred CcCEEEEEeeecccCHhHHHHHHHHHHCCC---EEEEEEEEEECCCChhhc
Confidence 589999999999999999999999999998 344 44456666665555
No 96
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=96.54 E-value=0.0027 Score=64.02 Aligned_cols=47 Identities=21% Similarity=0.423 Sum_probs=37.9
Q ss_pred eccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE
Q 022342 201 YEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN 247 (298)
Q Consensus 201 y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~ 247 (298)
.+.++..++||+|+|+||.+.||.|+.++++.|++.|+.+-.+.+.|
T Consensus 358 ~~~~~~~~~gk~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~ri~s 404 (510)
T PRK07847 358 LNPLREVIRGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRISS 404 (510)
T ss_pred cCccccccCCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEECC
Confidence 34455568999999999999999999999999999999543333444
No 97
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=96.49 E-value=0.0031 Score=63.10 Aligned_cols=47 Identities=19% Similarity=0.379 Sum_probs=37.8
Q ss_pred eccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE
Q 022342 201 YEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN 247 (298)
Q Consensus 201 y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~ 247 (298)
++.....++|+.|+|+||.+.||.|+.++++.|++.|+.+-.+.+.|
T Consensus 347 l~~~~~~i~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~s 393 (474)
T PRK06388 347 LNPIREVISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGS 393 (474)
T ss_pred eccccccccCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 34444567899999999999999999999999999999554444444
No 98
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=96.48 E-value=0.0029 Score=62.80 Aligned_cols=40 Identities=18% Similarity=0.423 Sum_probs=34.7
Q ss_pred CCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEE
Q 022342 204 LPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIF 245 (298)
Q Consensus 204 lP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~v 245 (298)
....++||+|+|+||++.||.|+..+++.|++.|+. .|.+
T Consensus 332 ~~~~~~gk~v~lvDD~ittG~T~~~~~~~l~~~ga~--~v~~ 371 (442)
T TIGR01134 332 IREVFRGKRVVLVDDSIVRGTTSRQIVKMLRDAGAK--EVHV 371 (442)
T ss_pred ccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCc--EEEE
Confidence 344678999999999999999999999999999994 4554
No 99
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=96.44 E-value=0.003 Score=63.13 Aligned_cols=47 Identities=17% Similarity=0.403 Sum_probs=37.6
Q ss_pred eccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE
Q 022342 201 YEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN 247 (298)
Q Consensus 201 y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~ 247 (298)
|.-....++||+|+|+||.+.||.|+.++++.|++.|+.+-.+.+.|
T Consensus 339 f~~~~~~v~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~~s 385 (475)
T PRK07631 339 LSPVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISS 385 (475)
T ss_pred hhhcccccCCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEeC
Confidence 33345568899999999999999999999999999999543333444
No 100
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=96.44 E-value=0.0028 Score=63.37 Aligned_cols=48 Identities=17% Similarity=0.408 Sum_probs=38.6
Q ss_pred EeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE
Q 022342 200 IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN 247 (298)
Q Consensus 200 ~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~ 247 (298)
-|.-.+..++||+|+|+||.+.||.|+.++++.|++.|+.+-.+.+.|
T Consensus 338 ~f~~~~~~i~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~s 385 (471)
T PRK06781 338 KLSAVRGVVEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIAS 385 (471)
T ss_pred ceeccccccCCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEECC
Confidence 344345678899999999999999999999999999999554444444
No 101
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=96.42 E-value=0.011 Score=59.66 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=57.3
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCC---CHHHHHHHHHhhhhhHHHhhccccccc-ceEEecCCCCCchhHHHHHHHH
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGR---DVDSVLEQYAKFVKPAFDDFVLPSKKY-ADVIIPRGGDNHVAIDLIVQHI 77 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr---~~~~v~~~~~~~~~p~~~~~i~P~~~~-ADiii~~~~~~~~~~~~i~~~i 77 (298)
|+|||++++.++|..||..+.. +||. +.+++.+.+...-+-+..+++.|.... ++++|+..+.+ ++.+++.|
T Consensus 422 dlKIfL~As~evRa~RR~~~l~-~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDTs~ls---ieeVv~~I 497 (512)
T PRK13477 422 ELKIFLTASVEERARRRALDLQ-AQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELITDGLS---IEEVVDKI 497 (512)
T ss_pred CEEEEEECCHHHHHHHHHhhhh-hCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEECCCCC---HHHHHHHH
Confidence 7999999999999999987743 5664 578899998886677888899998777 67999875543 44444444
Q ss_pred hhhc
Q 022342 78 HTKL 81 (298)
Q Consensus 78 ~~~l 81 (298)
.+.+
T Consensus 498 l~~i 501 (512)
T PRK13477 498 IDLY 501 (512)
T ss_pred HHHH
Confidence 4443
No 102
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=96.34 E-value=0.0091 Score=59.73 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=37.9
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHH-HHHHHH
Q 022342 209 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEG-IHCVCK 260 (298)
Q Consensus 209 ~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~g-l~~l~~ 260 (298)
+|++|+|+||+++||+|+.++++.|++.|+. =+-+++++--.+| .+++.+
T Consensus 392 ~G~rVlIVDDViTTGgSi~eaie~l~~aG~~--V~~v~vlVDR~~g~~~~L~~ 442 (477)
T PRK05500 392 PGETVVVVDDILITGKSVMEGAEKLKSAGLN--VRDIVVFIDHEQGVKDKLQS 442 (477)
T ss_pred CcCEEEEEEeccccCHHHHHHHHHHHHCCCE--EEEEEEEEECCcchHHHHHh
Confidence 6899999999999999999999999999982 2334444444444 556643
No 103
>PRK00023 cmk cytidylate kinase; Provisional
Probab=96.32 E-value=0.013 Score=52.84 Aligned_cols=79 Identities=20% Similarity=0.317 Sum_probs=52.3
Q ss_pred CeEEEEeCCchhHHHhhhhccccc-CCCCHHHHHHHHHhhhhhHHHhhcccccccce-EEecCCCCC-chhHHHHHHHHh
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVE-RGRDVDSVLEQYAKFVKPAFDDFVLPSKKYAD-VIIPRGGDN-HVAIDLIVQHIH 78 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~e-rgr~~~~v~~~~~~~~~p~~~~~i~P~~~~AD-iii~~~~~~-~~~~~~i~~~i~ 78 (298)
+++||+++|.+.|..||..+.... ++-+.+++.+...+.=+-....|+.|.+.++| ++|+++.-+ ...++.|.+.++
T Consensus 141 ~~~ifl~a~~e~R~~Rr~~~~~~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~IDTs~l~~ee~v~~I~~~i~ 220 (225)
T PRK00023 141 ELKIFLTASAEERAERRYKELQAKGISVDFEDLLAEIKERDERDSNRAVAPLKPAEDALLLDTSGLSIEEVVEKILALVE 220 (225)
T ss_pred CEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcccccccccCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 689999999999988877774321 24556666655444333334667899999887 999875533 234556666665
Q ss_pred hh
Q 022342 79 TK 80 (298)
Q Consensus 79 ~~ 80 (298)
..
T Consensus 221 ~~ 222 (225)
T PRK00023 221 EK 222 (225)
T ss_pred HH
Confidence 43
No 104
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=95.81 E-value=0.027 Score=48.85 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=43.7
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCC
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGG 64 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~ 64 (298)
+|..+||++|.++|+.|.+.|| |.+.+++.+.+... .|. +..+..||++|.|.+
T Consensus 124 ~D~vv~V~~~~~~~~~Rl~~R~----~~s~~~~~~r~~~q-~~~-----~~~~~~ad~vI~N~~ 177 (188)
T TIGR00152 124 CDRVIVVDVSPQLQLERLMQRD----NLTEEEVQKRLASQ-MDI-----EERLARADDVIDNSA 177 (188)
T ss_pred CCEEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHhc-CCH-----HHHHHhCCEEEECCC
Confidence 5889999999999999999998 88888888876663 333 244788999998744
No 105
>PRK04182 cytidylate kinase; Provisional
Probab=95.69 E-value=0.07 Score=45.13 Aligned_cols=75 Identities=20% Similarity=0.350 Sum_probs=45.0
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhh---hhhHHHhhc---ccccccceEEecCCCCCc-hhHHHHH
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKF---VKPAFDDFV---LPSKKYADVIIPRGGDNH-VAIDLIV 74 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~---~~p~~~~~i---~P~~~~ADiii~~~~~~~-~~~~~i~ 74 (298)
+++||+++|.++++.|...|+ +++.+.......+. .+.-|..|. .|..+.||++|+++..+. ..++.|.
T Consensus 93 ~~~V~l~a~~e~~~~Rl~~r~----~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~ 168 (180)
T PRK04182 93 DLKIWLKAPLEVRAERIAERE----GISVEEALEETIEREESEAKRYKEYYGIDIDDLSIYDLVINTSRWDPEGVFDIIL 168 (180)
T ss_pred CEEEEEECCHHHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEEEECCCCCHHHHHHHHH
Confidence 689999999999988887775 45666554432221 111222222 233468999999755432 3445555
Q ss_pred HHHhhh
Q 022342 75 QHIHTK 80 (298)
Q Consensus 75 ~~i~~~ 80 (298)
+.+...
T Consensus 169 ~~~~~~ 174 (180)
T PRK04182 169 TAIDKL 174 (180)
T ss_pred HHHHHH
Confidence 555543
No 106
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=95.67 E-value=0.061 Score=47.43 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=44.3
Q ss_pred CcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeC--HHH---HHHHHHhCCCcEEE
Q 022342 210 ERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISA--PEG---IHCVCKRFPSLKIV 268 (298)
Q Consensus 210 ~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas--~~g---l~~l~~~~p~v~i~ 268 (298)
.+.++|+||-+.||+|++..|+.|++.-+ .+++++++++-- ++. .+.+.+..+ +.|-
T Consensus 121 ~~~lVLVDDEiSTG~T~lnli~al~~~~p-~~~yvvasL~d~~~~~~~~~~~~~~~~lg-i~i~ 182 (191)
T PF15609_consen 121 ARTLVLVDDEISTGNTFLNLIRALHAKYP-RKRYVVASLLDWRSEEDRARFEALAEELG-IPID 182 (191)
T ss_pred CCCEEEEecCccchHHHHHHHHHHHHhCC-CceEEEEEEeeCCCHHHHHHHHHHHHHcC-CcEE
Confidence 47999999999999999999999999866 589999998653 333 345666664 4443
No 107
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=95.57 E-value=0.042 Score=53.73 Aligned_cols=108 Identities=15% Similarity=0.134 Sum_probs=68.9
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHHhhh
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTK 80 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~ 80 (298)
+|..|||++|.++|+.|=.. .||.+.+.....+.... + .++.++.||++|++++........+.+.++..
T Consensus 124 ~D~iI~V~ap~e~ri~Rl~~----rRg~s~~~a~~ri~~Q~-~-----~e~k~~~AD~vIdN~~s~e~l~~~v~~~l~~~ 193 (395)
T PRK03333 124 FHLVVVVDADVEVRVRRLVE----QRGMAEADARARIAAQA-S-----DEQRRAVADVWLDNSGTPDELVEAVRALWADR 193 (395)
T ss_pred CCEEEEEECCHHHHHHHHHh----cCCCCHHHHHHHHHhcC-C-----hHHHHHhCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 58999999999999977433 47899988877766532 2 23347899999997665443444444444443
Q ss_pred cc----c-cc-cccCCCceeeccchHHHHHHhHhhhcCCCChhhHHHHHHHHHHHHH
Q 022342 81 LG----Q-HD-LCKIYPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVV 131 (298)
Q Consensus 81 l~----~-~~-l~~~~~~l~vl~~~~~l~~llt~LRd~~T~~~~Fr~~~~rl~~lL~ 131 (298)
|. + ++ .+.....|.+.++.| .| +..|..-..+|...|.
T Consensus 194 ~~~~~~~~~~~~~~~~~~v~v~~ydp---~W----------~~~f~~e~~~l~~~l~ 237 (395)
T PRK03333 194 LLPFAHNLRARRRAARAPPRLVPADP---SW----------PAQAQRIVARLKTAAG 237 (395)
T ss_pred HhhHHHHHhcCCCCCCCCceEeCCCC---Cc----------HHHHHHHHHHHHHhcC
Confidence 33 1 12 223445688888755 23 2457777776666554
No 108
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.51 E-value=0.061 Score=45.21 Aligned_cols=72 Identities=15% Similarity=0.258 Sum_probs=46.1
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhccccc------ccceEEecCCCCCchhHHHHH
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSK------KYADVIIPRGGDNHVAIDLIV 74 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~------~~ADiii~~~~~~~~~~~~i~ 74 (298)
.|++|||++|.++|+.|...|+ |.+.++...++.+.-+.....|...+. .+-|++|+.+.-....++.|.
T Consensus 92 ~d~~v~v~a~~~~r~~R~~~R~----~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~ydl~i~t~~~~~~~~~~i~ 167 (171)
T TIGR02173 92 ADVKIWLKAPLEVRARRIAKRE----GKSLTVARSETIEREESEKRRYLKFYGIDIDDLSIYDLVINTSNWDPNNVDIIL 167 (171)
T ss_pred cCEEEEEECCHHHHHHHHHHcc----CCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEEEECCCCCHHHHHHHH
Confidence 3789999999999998888875 567777776655433333333333332 345899998554432255554
Q ss_pred HH
Q 022342 75 QH 76 (298)
Q Consensus 75 ~~ 76 (298)
+.
T Consensus 168 ~~ 169 (171)
T TIGR02173 168 DA 169 (171)
T ss_pred HH
Confidence 43
No 109
>PRK01184 hypothetical protein; Provisional
Probab=95.27 E-value=0.063 Score=46.15 Aligned_cols=59 Identities=15% Similarity=0.190 Sum_probs=39.9
Q ss_pred eEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCC
Q 022342 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGD 65 (298)
Q Consensus 3 ~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~ 65 (298)
..|||++|.++++.|-..|+-...+.+.+++.+.......+. +++..+.||++|.|++.
T Consensus 106 ~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~----~~~~~~~ad~vI~N~~~ 164 (184)
T PRK01184 106 ILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWG----IGEVIALADYMIVNDST 164 (184)
T ss_pred EEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccC----HHHHHHhcCEEEeCCCC
Confidence 689999999999999888875434456666665544322121 23344789999987554
No 110
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=95.20 E-value=0.028 Score=49.95 Aligned_cols=60 Identities=17% Similarity=0.342 Sum_probs=51.1
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecC
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPR 62 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~ 62 (298)
|++|=+-.=-.+.-+.++.||..+||++-|.|++...+ ..|+|-+||.||-...||=+.+
T Consensus 148 DlliGvVPivNLEWIQK~~RDt~~RGhSrEAVmDsivR-sMdDYinyItPQFSrThINFQR 207 (289)
T COG3954 148 DLLVGVVPIVNLEWIQKLIRDTSERGHSREAVMDSVVR-SMDDYINYITPQFSRTHINFQR 207 (289)
T ss_pred ceeeeeeeEeeHHHHHHHHhcccccCccHHHHHHHHHH-hhhhHHhhcCccccccccceee
Confidence 56666666667788889999999999999999999886 7899999999999998875543
No 111
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=94.49 E-value=0.036 Score=54.70 Aligned_cols=122 Identities=17% Similarity=0.295 Sum_probs=75.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHhCCCCCeeEEEeCCCCcceeeeeeccceeEeeehHHHHHHHHHhccCCccceEEEEecCC
Q 022342 115 SKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSMENALRACCKGIKIGKILIHRDGD 194 (298)
Q Consensus 115 ~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~tp~g~~~~g~~~~~~i~~V~IlR~m~~~~~~~~p~a~~g~i~i~R~~~ 194 (298)
+...--.+-.++|+.|++|+-.+. ++.|.-|........-+ .+-.++| +.+|+ +.+--+|.-.|+-..+
T Consensus 261 dg~sVy~~R~~mG~~La~e~~~ea---DvVipVPDSg~~aAig~-A~~sGiP----y~~Gl---iKNrYvgRTFI~P~q~ 329 (470)
T COG0034 261 DGISVYEARKRMGEKLAEEIPVEA---DVVIPVPDSGRPAAIGY-ARASGIP----YEEGL---IKNRYVGRTFIMPTQE 329 (470)
T ss_pred CCeeHHHHHHHHHHHHHHhCCccc---cEEEecCCCChHHHHHH-HHHhCCc----hhhcc---ccccccceeeeCCcHH
Confidence 333444456788999998886655 45565565431111111 1334454 44443 3344455444432211
Q ss_pred ---CCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE
Q 022342 195 ---NGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN 247 (298)
Q Consensus 195 ---t~~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~ 247 (298)
.+.++-.+.+...++||.|+|+||-|-.|.|....++.|++.|++|-++.+++
T Consensus 330 ~R~~~Vr~KLnpvr~~v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvrias 385 (470)
T COG0034 330 LREKGVRLKLNPVREVVKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIAS 385 (470)
T ss_pred HHHhhhhhhcCchHHHhCCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEecC
Confidence 11234566777789999999999999999999999999999999654444444
No 112
>PLN02422 dephospho-CoA kinase
Probab=94.46 E-value=0.13 Score=46.80 Aligned_cols=54 Identities=22% Similarity=0.299 Sum_probs=41.6
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCC
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGG 64 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~ 64 (298)
+|..|||++|.++|+.|=+.|| |.+.++....... ..|..+. ++.||+||+|++
T Consensus 126 ~D~vI~V~a~~e~ri~RL~~R~----g~s~eea~~Ri~~-Q~~~eek-----~~~AD~VI~N~g 179 (232)
T PLN02422 126 TKPVVVVWVDPETQLERLMARD----GLSEEQARNRINA-QMPLDWK-----RSKADIVIDNSG 179 (232)
T ss_pred CCEEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHH-cCChhHH-----HhhCCEEEECCC
Confidence 6899999999999999999997 7777777776433 4443222 688999999854
No 113
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=94.38 E-value=0.085 Score=47.12 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=50.3
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCHH-HHHHHHHhhhhhHHHhhccc-ccccceEEecCCCCCchhHHHHHHHHhh
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDVD-SVLEQYAKFVKPAFDDFVLP-SKKYADVIIPRGGDNHVAIDLIVQHIHT 79 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~~-~v~~~~~~~~~p~~~~~i~P-~~~~ADiii~~~~~~~~~~~~i~~~i~~ 79 (298)
|+.||+++|.+.++.|--.| |++-+ .+-..|++.++-.|+++..| +...+++++-.+ +|.-.++.|+..|.+
T Consensus 144 d~~i~l~~~~~~~~~Ri~~R-----~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~-~~~~~~e~i~~~I~~ 217 (219)
T cd02030 144 HLVIYLDVPVPEVQKRIKKR-----GDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDW-TEAGDTEKVVEDIEY 217 (219)
T ss_pred CEEEEEeCCHHHHHHHHHHc-----CCchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeC-CChhhHHHHHHHHHc
Confidence 89999999999988874444 44322 34456877899999988877 566788776553 345566767666653
No 114
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=94.28 E-value=0.13 Score=47.08 Aligned_cols=53 Identities=19% Similarity=0.352 Sum_probs=41.9
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCC
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRG 63 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~ 63 (298)
+|..|||++|.++++.|=+.| +|.+.+++.+.... ..|..+ .++.||+||.|+
T Consensus 137 ~D~iv~V~a~~e~ri~RL~~R----~g~s~eea~~Ri~~-Q~~~~e-----k~~~aD~VI~N~ 189 (244)
T PTZ00451 137 VSASVVVSCSEERQIERLRKR----NGFSKEEALQRIGS-QMPLEE-----KRRLADYIIEND 189 (244)
T ss_pred CCeEEEEECCHHHHHHHHHHc----CCCCHHHHHHHHHh-CCCHHH-----HHHhCCEEEECC
Confidence 589999999999999997777 47888888888766 333222 468899999985
No 115
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=94.27 E-value=0.032 Score=53.86 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=43.8
Q ss_pred eEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE
Q 022342 199 LIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN 247 (298)
Q Consensus 199 ~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~ 247 (298)
.-+.-++.+++||+|+|+||-|--|.|+...++.|++.|+++-.+.+++
T Consensus 345 ~Kl~~l~~~~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~riAs 393 (474)
T KOG0572|consen 345 KKLGPLRQNFEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIRIAS 393 (474)
T ss_pred hhcccchhhcCCceEEEEecceeccCchHHHHHHHHHcCCcEEEEEecC
Confidence 3578889999999999999999999999999999999999776666666
No 116
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=94.18 E-value=0.17 Score=44.87 Aligned_cols=55 Identities=22% Similarity=0.454 Sum_probs=39.4
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCC
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGD 65 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~ 65 (298)
+|..+||++|.++++.|-+.||. .+.+++.+.... ..+. ..++ +.||++|.|.+.
T Consensus 134 ~d~ii~V~a~~e~~~~Rl~~R~~----~s~e~~~~Ri~~-q~~~-~~~~----~~ad~vI~N~g~ 188 (208)
T PRK14731 134 LDFIVVVAADTELRLERAVQRGM----GSREEIRRRIAA-QWPQ-EKLI----ERADYVIYNNGT 188 (208)
T ss_pred CCeEEEEECCHHHHHHHHHHcCC----CCHHHHHHHHHH-cCCh-HHHH----HhCCEEEECCCC
Confidence 58999999999999999999863 366666666443 3332 3443 469999987443
No 117
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=93.92 E-value=0.24 Score=44.13 Aligned_cols=54 Identities=20% Similarity=0.340 Sum_probs=41.1
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCC
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGG 64 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~ 64 (298)
+|..|+|++|.++|+.|-+.|| |.+.++..+.... ..|..+ -++.||+||+|++
T Consensus 129 ~D~vi~V~a~~e~ri~Rl~~Rd----~~s~~~a~~ri~~-Q~~~ee-----k~~~aD~VI~N~g 182 (204)
T PRK14733 129 LKKVIVIKADLETRIRRLMERD----GKNRQQAVAFINL-QISDKE-----REKIADFVIDNTE 182 (204)
T ss_pred CCEEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHh-CCCHHH-----HHHhCCEEEECcC
Confidence 5889999999999999998886 6677777766443 444322 2388999999865
No 118
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=93.91 E-value=0.14 Score=53.75 Aligned_cols=78 Identities=17% Similarity=0.214 Sum_probs=58.8
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccce-EEecCCCCCc-hhHHHHHHHHhh
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYAD-VIIPRGGDNH-VAIDLIVQHIHT 79 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~AD-iii~~~~~~~-~~~~~i~~~i~~ 79 (298)
|+|||++++.++|-.||..++.. -+.++++++..+.=+-+. +++.|.+...| ++|++..-+- ..++.+.+.|+.
T Consensus 156 ~~K~~l~A~~~~Ra~Rr~~~~~~---~~~~~~~~~~~~Rd~~d~-R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i~~ 231 (712)
T PRK09518 156 EVRILLTAREEVRQARRSGQDRS---ETPGVVLEDVAARDEADS-KVTSFLSAADGVTTLDNSDLDFDETLDLLIGLVED 231 (712)
T ss_pred CeEEEEECCHHHHHHHHHHhhhc---CCHHHHHHHHHHHhhhcc-cccCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHh
Confidence 79999999999999999999865 889999999877667777 99999877666 5666544332 344566666655
Q ss_pred hccc
Q 022342 80 KLGQ 83 (298)
Q Consensus 80 ~l~~ 83 (298)
.+..
T Consensus 232 ~~~~ 235 (712)
T PRK09518 232 AIEE 235 (712)
T ss_pred hhhh
Confidence 5443
No 119
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=93.85 E-value=0.14 Score=53.26 Aligned_cols=76 Identities=18% Similarity=0.312 Sum_probs=55.9
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCC--CHHHHHHHHHhhhhhHHHhhcccccccce-EEecCCCCCchhHHHHHHHHh
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGR--DVDSVLEQYAKFVKPAFDDFVLPSKKYAD-VIIPRGGDNHVAIDLIVQHIH 78 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr--~~~~v~~~~~~~~~p~~~~~i~P~~~~AD-iii~~~~~~~~~~~~i~~~i~ 78 (298)
|+|||++++.++|-.||...-. ++|. +.++++++..+.=+-+..+++.|.+.-.| ++|++.. ..++.+++.|.
T Consensus 575 ~~kifl~a~~~~Ra~Rr~~~~~-~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts~---~~~~~v~~~i~ 650 (661)
T PRK11860 575 ALKVFLTASAEARAERRYKQLI-SKGISANIADLLADLEARDARDTQRSVAPLKPAQDALLLDNSD---LTIEQAVAQVL 650 (661)
T ss_pred CeEEEEECChhHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECCC---CCHHHHHHHHH
Confidence 7999999999999999987644 4454 89999999877667788889999999766 5555532 23445555554
Q ss_pred hhc
Q 022342 79 TKL 81 (298)
Q Consensus 79 ~~l 81 (298)
+.+
T Consensus 651 ~~i 653 (661)
T PRK11860 651 DWW 653 (661)
T ss_pred HHH
Confidence 443
No 120
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=93.61 E-value=0.17 Score=44.34 Aligned_cols=65 Identities=22% Similarity=0.331 Sum_probs=44.1
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHHhh
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHT 79 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~ 79 (298)
+|..+||++|.++++.|-..|| |.+.+++...... ..|.. .....||+||.|.+. ++.+.+.+..
T Consensus 125 ~D~vi~V~a~~e~~~~Rl~~R~----~~s~e~~~~ri~~-Q~~~~-----~~~~~ad~vI~N~g~----~e~l~~qv~~ 189 (194)
T PRK00081 125 VDRVLVVDAPPETQLERLMARD----GLSEEEAEAIIAS-QMPRE-----EKLARADDVIDNNGD----LEELRKQVER 189 (194)
T ss_pred CCeEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHH-hCCHH-----HHHHhCCEEEECCCC----HHHHHHHHHH
Confidence 6899999999999999988874 6677766665443 33322 235789999987443 4444444443
No 121
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.50 E-value=0.42 Score=41.06 Aligned_cols=56 Identities=30% Similarity=0.509 Sum_probs=39.6
Q ss_pred CeEEEEeCCchhHHHhhhhcccccC----CCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCC
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVER----GRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDN 66 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~er----gr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~ 66 (298)
+..||+++|.+.++.| +.++- .| +-+.++.+.++...++|.|+++ ||++|+....+
T Consensus 98 ~~vv~L~~~~e~~~~R-i~~~~-~rP~~~~~~~~~~~~~l~~~R~~~Y~~~-------Ad~~idt~~~s 157 (172)
T PRK05057 98 GVVVYLETTIEKQLAR-TQRDK-KRPLLQVDDPREVLEALANERNPLYEEI-------ADVTIRTDDQS 157 (172)
T ss_pred CEEEEEeCCHHHHHHH-HhCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHhh-------CCEEEECCCCC
Confidence 5789999999988776 44332 22 3344566777778889988665 99999864443
No 122
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=92.66 E-value=0.39 Score=43.06 Aligned_cols=75 Identities=23% Similarity=0.356 Sum_probs=52.4
Q ss_pred CeEEEEeCCchhHHHhhhhccccc-CCCCHHHHHHHHHhhhhhHHHhhcccccccce-EEecCCCCCchhHHHHHHHHhh
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVE-RGRDVDSVLEQYAKFVKPAFDDFVLPSKKYAD-VIIPRGGDNHVAIDLIVQHIHT 79 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~e-rgr~~~~v~~~~~~~~~p~~~~~i~P~~~~AD-iii~~~~~~~~~~~~i~~~i~~ 79 (298)
|++||+++|.+.|..||..|+... ...+.+++.+++...=.-...++..|.+...| ++|+.+. ..++.+++.|.+
T Consensus 139 ~~~ifl~a~~~~Ra~Rr~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i~Idts~---l~ieevv~~I~~ 215 (217)
T TIGR00017 139 EVKIFLDASVEERAKRRYKQLQIKGNEVNFEELLAEIKERDDRDSNREVAPLKKADDALYLDTSN---LSIDEVVEKILE 215 (217)
T ss_pred CEEEEEECCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhcccccccCcccCCCCeEEEECCC---CCHHHHHHHHHH
Confidence 689999999999999999997642 24567899888876433455666688777655 4466532 345666665543
No 123
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=92.38 E-value=0.2 Score=45.84 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=53.3
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE--EEeCHHHHHHHHHhCCCcEEEEEeecCCCC
Q 022342 207 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN--LISAPEGIHCVCKRFPSLKIVTSEIDVALN 277 (298)
Q Consensus 207 ~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~--~vas~~gl~~l~~~~p~v~i~~a~id~~l~ 277 (298)
|+.||..|++|+.+..-.|..+|.+.||++|+ =+|.+++ -+.|.++-..+.+.-=+=.++|-.++.++.
T Consensus 244 dvggriaimvddiiddvqsfvaaae~lkerga--ykiyv~athgllssdapr~lees~idevvvtntvphevq 314 (354)
T KOG1503|consen 244 DVGGRIAIMVDDIIDDVQSFVAAAEVLKERGA--YKIYVMATHGLLSSDAPRLLEESPIDEVVVTNTVPHEVQ 314 (354)
T ss_pred ccCceEEEEehhhHHhHHHHHHHHHHHHhcCc--eEEEEEeecccccccchhhhhcCCCceEEEecCCcHHHH
Confidence 45689999999999999999999999999999 5788887 466777766665432233467777766554
No 124
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=92.36 E-value=0.062 Score=45.08 Aligned_cols=58 Identities=19% Similarity=0.425 Sum_probs=42.1
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCHHH-HHHHHHhhhh-hHHHhhcccccccceEEecCCC
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDS-VLEQYAKFVK-PAFDDFVLPSKKYADVIIPRGG 64 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~~~-v~~~~~~~~~-p~~~~~i~P~~~~ADiii~~~~ 64 (298)
|+-||+++|.++++.| +..|||+.|. +-..|++... -.|+.|.......-=++|++..
T Consensus 69 dl~IYL~~~~e~~~~R-----I~kRgR~~E~~i~~~Yl~~L~~~~y~~~~~~~~~~~vl~id~~~ 128 (146)
T PF01712_consen 69 DLIIYLDASPETCLER-----IKKRGREEEKNIPLEYLERLHEEAYEDWLKKYDSTPVLVIDADN 128 (146)
T ss_dssp SEEEEEE--HHHHHHH-----HHHCTTGGGTTS-HHHHHHHHHHHHCCHHSCCTTTTGCEEEECE
T ss_pred CeEEEEeCCHHHHHHH-----HHHhCCchhcCCCHHHHHHHhHHHHHHHHHhCCCCceEEEECCc
Confidence 7899999999999776 4457888884 4466887787 7899998877665566777644
No 125
>PRK00131 aroK shikimate kinase; Reviewed
Probab=91.96 E-value=0.86 Score=38.05 Aligned_cols=70 Identities=21% Similarity=0.408 Sum_probs=40.5
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCC----CCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCc-hhHHHHHHH
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERG----RDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNH-VAIDLIVQH 76 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~erg----r~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~-~~~~~i~~~ 76 (298)
.+.||+++|.+.+. +|+.++.. |+ .+..+.+.++.+...+.| ++++|++|+.+..+. ..++.|.++
T Consensus 98 ~~~v~l~~~~~~~~-~R~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~-------~~~~dl~idt~~~~~~e~~~~I~~~ 168 (175)
T PRK00131 98 GTVVYLDASFEELL-RRLRRDRN-RPLLQTNDPKEKLRDLYEERDPLY-------EEVADITVETDGRSPEEVVNEILEK 168 (175)
T ss_pred CEEEEEECCHHHHH-HHhcCCCC-CCcCCCCChHHHHHHHHHHHHHHH-------HhhcCeEEeCCCCCHHHHHHHHHHH
Confidence 36799999999964 44444332 22 223334444444344444 355899999755543 345666666
Q ss_pred Hhhh
Q 022342 77 IHTK 80 (298)
Q Consensus 77 i~~~ 80 (298)
|+..
T Consensus 169 v~~~ 172 (175)
T PRK00131 169 LEAA 172 (175)
T ss_pred HHhh
Confidence 6543
No 126
>PRK13946 shikimate kinase; Provisional
Probab=91.87 E-value=0.76 Score=39.73 Aligned_cols=73 Identities=23% Similarity=0.333 Sum_probs=43.8
Q ss_pred CeEEEEeCCchhHHHhhhhccccc--CCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCc-hhHHHHHHHHh
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVE--RGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNH-VAIDLIVQHIH 78 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~e--rgr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~-~~~~~i~~~i~ 78 (298)
++.||+++|.++++.|-..|+... .+.+..+.+++..+.++|.| ..+|++|+...... .+++.|++.|+
T Consensus 104 ~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~y--------~~~dl~i~~~~~~~~~~~~~i~~~i~ 175 (184)
T PRK13946 104 GISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYPVY--------AEADLTVASRDVPKEVMADEVIEALA 175 (184)
T ss_pred CEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHH--------HhCCEEEECCCCCHHHHHHHHHHHHH
Confidence 478999999999887655543211 12344566665555566643 34799987544332 34556666665
Q ss_pred hhcc
Q 022342 79 TKLG 82 (298)
Q Consensus 79 ~~l~ 82 (298)
..+.
T Consensus 176 ~~~~ 179 (184)
T PRK13946 176 AYLE 179 (184)
T ss_pred Hhhc
Confidence 5443
No 127
>PRK13949 shikimate kinase; Provisional
Probab=91.83 E-value=0.34 Score=41.61 Aligned_cols=69 Identities=16% Similarity=0.317 Sum_probs=36.9
Q ss_pred CeEEEEeCCchhHHHhhhhcccccC----CCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHH
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVER----GRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHI 77 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~er----gr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i 77 (298)
++.||+++|.++ +.+|+.++-..| +.+.++..+ ..+-.|+++..=+++ ||++|+..+.+ .+.++++|
T Consensus 95 ~~vi~L~~~~~~-~~~Ri~~~~~~RP~~~~~~~~~~~~----~i~~l~~~R~~~Y~~-ad~~id~~~~~---~~e~~~~I 165 (169)
T PRK13949 95 GTTVYLKVSPEV-LFVRLRLAKQQRPLLKGKSDEELLD----FIIEALEKRAPFYRQ-AKIIFNADKLE---DESQIEQL 165 (169)
T ss_pred CeEEEEECCHHH-HHHHHhcCCCCCCCCCCCChHHHHH----HHHHHHHHHHHHHHh-CCEEEECCCCC---HHHHHHHH
Confidence 678999999998 667776543222 112232222 222234444322233 79999875543 24445554
Q ss_pred hh
Q 022342 78 HT 79 (298)
Q Consensus 78 ~~ 79 (298)
.+
T Consensus 166 ~~ 167 (169)
T PRK13949 166 VQ 167 (169)
T ss_pred HH
Confidence 43
No 128
>PRK08118 topology modulation protein; Reviewed
Probab=91.61 E-value=0.24 Score=42.48 Aligned_cols=60 Identities=22% Similarity=0.296 Sum_probs=42.3
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCH---------------HHHHHHHHhhhhhHHHhhcccccccceEEe
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDV---------------DSVLEQYAKFVKPAFDDFVLPSKKYADVII 60 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~---------------~~v~~~~~~~~~p~~~~~i~P~~~~ADiii 60 (298)
.|..||+|+|.++|+.|-+.|-...+|.+- -..+.+|.+..+|.|.+.++.......+|+
T Consensus 79 ~d~vi~Ld~p~~~~~~R~~~R~~~~~g~~~~~~~~g~~e~~~~~~l~wi~~~~~~~r~~~~~~~~~~~~~~~~~~ 153 (167)
T PRK08118 79 ADTIIFLDIPRTICLYRAFKRRVQYRGKTRPDMGAGCEEKFDLQFFKWIWEYPKTKRPSILKRLNQLSEEKDIVI 153 (167)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHHcCCCCCCCCCCCcccCCHHHHHHHHhCchhhhHHHHHHHHhcCCCCeEEE
Confidence 488999999999999999999776555422 234456666677777777766555555553
No 129
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=91.57 E-value=1 Score=39.15 Aligned_cols=69 Identities=20% Similarity=0.393 Sum_probs=48.8
Q ss_pred eEEEEeCCchhHHHhhhhccccc---CCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHHhh
Q 022342 3 MKIFVDTDADVRLARRIRRDTVE---RGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHT 79 (298)
Q Consensus 3 ~kifvd~d~d~rl~Rri~RD~~e---rgr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~ 79 (298)
..||+++|.++ +.+|+.+|..- ...+..+.+.+..+.+.|-|++. ||++++....+....+.+++.+..
T Consensus 97 ~vv~L~~~~e~-l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e~-------a~~~~~~~~~~~~v~~~i~~~l~~ 168 (172)
T COG0703 97 IVVYLDAPFET-LYERLQRDRKRPLLQTEDPREELEELLEERQPLYREV-------ADFIIDTDDRSEEVVEEILEALEG 168 (172)
T ss_pred eEEEEeCCHHH-HHHHhccccCCCcccCCChHHHHHHHHHHHHHHHHHh-------CcEEecCCCCcHHHHHHHHHHHHH
Confidence 57999999987 45667766533 35555677777777799999877 999999877775445555555443
No 130
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=91.14 E-value=0.3 Score=42.20 Aligned_cols=56 Identities=25% Similarity=0.462 Sum_probs=40.5
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCHHHHH-HHHHhhhhhHHHhhccc-ccccceEE-ecC
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVL-EQYAKFVKPAFDDFVLP-SKKYADVI-IPR 62 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~-~~~~~~~~p~~~~~i~P-~~~~ADii-i~~ 62 (298)
|+.||+++|.++++.|- .+|||+.+... .+|++.++..|+.+..+ .+..+.++ |++
T Consensus 126 d~~i~l~~~~~~~~~Ri-----~~R~r~~e~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~vid~ 184 (193)
T cd01673 126 DLVIYLDASPETCLKRI-----KKRGRPEEQGIPLDYLEDLHEAYEKWFLPQMYEKAPVLIIDA 184 (193)
T ss_pred CEEEEEeCCHHHHHHHH-----HhcCcHhhhcCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEC
Confidence 78999999999997763 24677655433 56788899999999987 34445654 544
No 131
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=90.53 E-value=0.66 Score=41.29 Aligned_cols=58 Identities=26% Similarity=0.357 Sum_probs=44.7
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCch
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHV 68 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~ 68 (298)
+|..|.|++|.++|+.|-++|| |-|.+.+-.... ..+|..++ ...||+|+.++.....
T Consensus 124 ~d~Vi~V~a~~e~r~eRl~~R~----~~~~e~~~~~~~-~Q~~~~ek-----~~~ad~vi~n~~~i~~ 181 (201)
T COG0237 124 FDKVIVVYAPPEIRLERLMKRD----GLDEEDAEARLA-SQRDLEEK-----LALADVVIDNDGSIEN 181 (201)
T ss_pred CCEEEEEECCHHHHHHHHHhcC----CCCHHHHHHHHH-hcCCHHHH-----HhhcCChhhcCCCHHH
Confidence 4788999999999999999997 456666666544 46777777 4899999988555443
No 132
>PRK00698 tmk thymidylate kinase; Validated
Probab=90.16 E-value=1.2 Score=38.47 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=41.8
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHHhhh
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTK 80 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~ 80 (298)
|+.||+++|.++++.|-..|... ...+.--..|.+.++..|..+.+... ...++|++.+......+.|.+.|.+.
T Consensus 129 d~~i~l~~~~~~~~~Rl~~R~~~---~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~Id~~~~~e~v~~~i~~~i~~~ 203 (205)
T PRK00698 129 DLTLYLDVPPEVGLARIRARGEL---DRIEQEGLDFFERVREGYLELAEKEP-ERIVVIDASQSLEEVHEDILAVIKAW 203 (205)
T ss_pred CEEEEEeCCHHHHHHHHHhcCCc---chhhhhhHHHHHHHHHHHHHHHHhCC-CeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 78999999999988887777521 11111122344445556666654322 34577876443333334444444443
No 133
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=89.98 E-value=1.6 Score=37.85 Aligned_cols=68 Identities=22% Similarity=0.286 Sum_probs=48.8
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccc------cccceEEecCCCCCchhHHHH
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPS------KKYADVIIPRGGDNHVAIDLI 73 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~------~~~ADiii~~~~~~~~~~~~i 73 (298)
|+|||+++|..+|..|=..|+ |-+++++..+-...=+-...+|-+=+ -...|+||+.+.-+..++-.+
T Consensus 92 dlkI~L~Apl~vRa~Ria~RE----gi~~~~a~~~~~~RE~se~kRY~~~YgIDidDlSiyDLVinTs~~~~~~v~~i 165 (179)
T COG1102 92 DLKIWLKAPLEVRAERIAKRE----GIDVDEALAETVEREESEKKRYKKIYGIDIDDLSIYDLVINTSKWDPEEVFLI 165 (179)
T ss_pred ceEEEEeCcHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHHHhCCCCccceeeEEEEecccCCHHHHHHH
Confidence 899999999999999999887 77888888775554444445553322 245899999866665444333
No 134
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=89.90 E-value=1.1 Score=38.07 Aligned_cols=71 Identities=17% Similarity=0.287 Sum_probs=43.9
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHHhhh
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTK 80 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~ 80 (298)
|+.||+++|.++++.|...|+-.+.. ...-..|.+.++..|..+..... .-.++|++.. ..+.+.+.|.+.
T Consensus 127 ~~~i~l~~~~~~~~~R~~~R~~~~~~---~~~~~~~~~~~~~~y~~~~~~~~-~~~~~id~~~----~~e~i~~~i~~~ 197 (200)
T cd01672 127 DLTILLDIDPEVGLARIEARGRDDRD---EQEGLEFHERVREGYLELAAQEP-ERIIVIDASQ----PLEEVLAEILKA 197 (200)
T ss_pred CEEEEEeCCHHHHHHHHHhcCCcchh---hhhhHHHHHHHHHHHHHHHHhCC-CeEEEEeCCC----CHHHHHHHHHHH
Confidence 68999999999999998877543221 13334566667778887765432 2236665532 245555555443
No 135
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=89.78 E-value=0.51 Score=42.42 Aligned_cols=76 Identities=22% Similarity=0.368 Sum_probs=54.8
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCHHHH-H---HHHHhhhhhHHHhhcccccccceEEecCCCC----CchhHHHH
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSV-L---EQYAKFVKPAFDDFVLPSKKYADVIIPRGGD----NHVAIDLI 73 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v-~---~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~----~~~~~~~i 73 (298)
|+-||+|++.|+-+.| | ..|||+.|.. - .+|.+...-.|..|++-.-..-++.|++..- |...++.+
T Consensus 128 dllIyLd~~~e~~l~R-I----~~RgR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~~~D~~~~~~d~~~v 202 (216)
T COG1428 128 DLLIYLDASLETLLRR-I----AKRGRPFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGIDGDSIDFVNNEQDLEKV 202 (216)
T ss_pred CEEEEEeCCHHHHHHH-H----HHhCCCcccccccchHHHHHHHHHHHHHHHHhcccCCeeeeccceecccCCHHHHHHH
Confidence 7899999999985544 3 3478888822 2 3477778889999998888888888887433 34556677
Q ss_pred HHHHhhhcc
Q 022342 74 VQHIHTKLG 82 (298)
Q Consensus 74 ~~~i~~~l~ 82 (298)
+..|.+.+.
T Consensus 203 ~~~I~~~~~ 211 (216)
T COG1428 203 LDQILAKLK 211 (216)
T ss_pred HHHHHHHHh
Confidence 777776653
No 136
>PRK13974 thymidylate kinase; Provisional
Probab=89.59 E-value=1.2 Score=39.50 Aligned_cols=44 Identities=14% Similarity=0.312 Sum_probs=34.1
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhc
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFV 49 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i 49 (298)
|+.||+|+|.++.+.|...|+- ...+.-...|++.++|.|..|.
T Consensus 136 d~~i~ld~~~~~~~~R~~~R~d----D~~e~~~~~y~~~v~~~y~~y~ 179 (212)
T PRK13974 136 DLTFFLEISVEESIRRRKNRKP----DRIEAEGIEFLERVAEGFALIA 179 (212)
T ss_pred CEEEEEeCCHHHHHHHHHhccc----CchhhhhHHHHHHHHHHHHHHH
Confidence 7899999999999999766521 2255555678888999999884
No 137
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=89.27 E-value=1.6 Score=36.75 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=41.0
Q ss_pred CeEEEEeCCchhHHHhhhhcccc-----cCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHH
Q 022342 2 NMKIFVDTDADVRLARRIRRDTV-----ERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQH 76 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~-----ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~ 76 (298)
++.||+++|.++.+.|-..|.-. -.|.+..+-+.+..+.+++.|.. .|+++|+... .++.+.+.
T Consensus 95 ~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~-------~a~~~Id~~~----~~e~v~~~ 163 (171)
T PRK03731 95 GIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYRE-------VAHHIIDATQ----PPSQVVSE 163 (171)
T ss_pred CEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHH-------hCCEEEcCCC----CHHHHHHH
Confidence 57899999999988765554211 12445433344444457777765 3578898642 24455555
Q ss_pred Hhhhc
Q 022342 77 IHTKL 81 (298)
Q Consensus 77 i~~~l 81 (298)
|.+.+
T Consensus 164 i~~~l 168 (171)
T PRK03731 164 ILSAL 168 (171)
T ss_pred HHHHH
Confidence 54443
No 138
>PRK04040 adenylate kinase; Provisional
Probab=89.18 E-value=1.3 Score=38.70 Aligned_cols=74 Identities=19% Similarity=0.211 Sum_probs=47.7
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCC-CchhHHHHHHH
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGD-NHVAIDLIVQH 76 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~-~~~~~~~i~~~ 76 (298)
|..||++++.+.-+.||+..+-..|+.+-++.++.+.+ ....|..++.-.....+.+|.|... -..|.+.+.+.
T Consensus 112 d~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~-~a~~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~i 186 (188)
T PRK04040 112 DVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQE-MNRAAAMAYAVLTGATVKIVENREGLLEEAAEEIVEV 186 (188)
T ss_pred CEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHH-HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 67899999999777777654344566667777777665 4445555555666668888876322 33455555443
No 139
>PRK00625 shikimate kinase; Provisional
Probab=88.81 E-value=2.2 Score=36.84 Aligned_cols=54 Identities=17% Similarity=0.123 Sum_probs=36.8
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCC
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRG 63 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~ 63 (298)
...||+++|.++...|-..|+..++..+.+.+.+-| +.+.|.|++ .||++|+..
T Consensus 97 ~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll-~~R~~~Y~~-------~ad~~i~~~ 150 (173)
T PRK00625 97 GLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEIL-SQRIDRMRS-------IADYIFSLD 150 (173)
T ss_pred CEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHH-HHHHHHHHH-------HCCEEEeCC
Confidence 357999999998887766676655444445554444 447777765 689888653
No 140
>PRK13947 shikimate kinase; Provisional
Probab=88.58 E-value=2.1 Score=35.97 Aligned_cols=66 Identities=23% Similarity=0.347 Sum_probs=36.8
Q ss_pred CeEEEEeCCchhHHHhhhhcccc---cCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHHh
Q 022342 2 NMKIFVDTDADVRLARRIRRDTV---ERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIH 78 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~---ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~ 78 (298)
++.||+++|.+++..|--.|... ..+...+.+.+.|.. ++|.|+ .||++|+..+. ..+.+.+.|.
T Consensus 95 ~~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~-r~~~y~--------~ad~~Idt~~~---~~~~i~~~I~ 162 (171)
T PRK13947 95 GVVICLKARPEVILRRVGKKKSRPLLMVGDPEERIKELLKE-REPFYD--------FADYTIDTGDM---TIDEVAEEII 162 (171)
T ss_pred CEEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHH-HHHHHH--------hcCEEEECCCC---CHHHHHHHHH
Confidence 46899999998876664333211 122233455555444 556554 28999986433 3444444444
Q ss_pred h
Q 022342 79 T 79 (298)
Q Consensus 79 ~ 79 (298)
+
T Consensus 163 ~ 163 (171)
T PRK13947 163 K 163 (171)
T ss_pred H
Confidence 4
No 141
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=88.53 E-value=1.6 Score=37.00 Aligned_cols=64 Identities=25% Similarity=0.389 Sum_probs=42.3
Q ss_pred eEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHHhhh
Q 022342 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTK 80 (298)
Q Consensus 3 ~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~ 80 (298)
..||+.++.+..+.+|+. +||++.++.+.++.....+..+ + ++.+|.+|.+. + ++...+.+++.
T Consensus 114 ~~i~~~~~~~e~~~~Rl~----~r~~~~~~~i~~rl~~~~~~~~-~----~~~~d~~i~n~-~----~~~~~~~l~~~ 177 (180)
T TIGR03263 114 VSIFILPPSLEELERRLR----KRGTDSEEVIERRLAKAKKEIA-H----ADEFDYVIVND-D----LEKAVEELKSI 177 (180)
T ss_pred EEEEEECCCHHHHHHHHH----HcCCCCHHHHHHHHHHHHHHHh-c----cccCcEEEECC-C----HHHHHHHHHHH
Confidence 468888888888888875 6777777777776665654322 2 45699999883 3 34444454444
No 142
>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2.7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....
Probab=87.91 E-value=1.1 Score=38.39 Aligned_cols=72 Identities=29% Similarity=0.469 Sum_probs=46.6
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCC--CCHHHHHHHHHhhhhhHHHhhcccccccce-EEecCCCCCchhHHHHHHHH
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERG--RDVDSVLEQYAKFVKPAFDDFVLPSKKYAD-VIIPRGGDNHVAIDLIVQHI 77 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~erg--r~~~~v~~~~~~~~~p~~~~~i~P~~~~AD-iii~~~~~~~~~~~~i~~~i 77 (298)
|+|||++++.++|-.||..--. +.| -++++++++....=+-...+=+.|.+.-.| ++|++ ++ ..++.+++.|
T Consensus 81 ~~KifLtAs~e~RA~RR~~e~~-~~g~~~~~e~v~~~i~~RD~~D~~R~~aPL~~a~DAi~IDt-s~--lti~evv~~i 155 (157)
T PF02224_consen 81 DLKIFLTASPEVRARRRYKELQ-EKGKKVSYEEVLEDIKERDERDSNREVAPLKKAEDAIVIDT-SN--LTIEEVVEKI 155 (157)
T ss_dssp SEEEEEE--HHHHHHHHHHHHH-HTT----HHHHHHHHHHHHHHHHCTSSS-SS--TTSEEEET-TT--S-HHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHH-hCCCCCCHHHHHHHHHhhChhhccCccCCCccCCCeEEEEC-CC--CCHHHHHHHH
Confidence 7999999999999999987543 455 468999988776556666777899999888 44554 22 3466666555
No 143
>PRK06217 hypothetical protein; Validated
Probab=87.79 E-value=2.6 Score=36.23 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=23.5
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCC
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGR 28 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr 28 (298)
.|..||+|+|.++++.|-..|+....|+
T Consensus 84 ~d~~i~Ld~~~~~~~~Rl~~R~~~~~~~ 111 (183)
T PRK06217 84 FDLVVFLTIPPELRLERLRLREFQRYGN 111 (183)
T ss_pred CCEEEEEECCHHHHHHHHHcCcccccCc
Confidence 4789999999999999999998754343
No 144
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=87.41 E-value=2.1 Score=38.66 Aligned_cols=104 Identities=16% Similarity=0.233 Sum_probs=59.9
Q ss_pred eEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccc----cceEEecCCCCCchhHHHHHHHHh
Q 022342 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKK----YADVIIPRGGDNHVAIDLIVQHIH 78 (298)
Q Consensus 3 ~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~----~ADiii~~~~~~~~~~~~i~~~i~ 78 (298)
+.||+++|.++++.|...|+- ..+ ++++. -.+..|-+|... .++++|+...+ ..++.+.+.|.
T Consensus 98 ~~I~l~~p~e~~~~Rn~~R~~---~~~-~~~i~-------~l~~r~e~p~~~~~wd~~~~~vd~~~~--~~~~ei~~~i~ 164 (249)
T TIGR03574 98 IIIYLKAPLDTLLRRNIERGE---KIP-NEVIK-------DMYEKFDEPGTKYSWDLPDLTIDTTKK--IDYNEILEEIL 164 (249)
T ss_pred EEEEecCCHHHHHHHHHhCCC---CCC-HHHHH-------HHHHhhCCCCCCCCccCceEEecCCCC--CCHHHHHHHHH
Confidence 568999999999988776642 122 33332 256667677654 39999976432 23355555554
Q ss_pred hhccccccccCCCceeeccchHHHHHHhHhhhcCCCChhhHHHHHHHHHHHHHHHHhCC
Q 022342 79 TKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGH 137 (298)
Q Consensus 79 ~~l~~~~l~~~~~~l~vl~~~~~l~~llt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~ 137 (298)
+.+.. . .. |. .-|+ ++-++...|.+-+|+.++-.+.+.++.
T Consensus 165 ~~~~~-~---~~--------~~----~~~~--~~~~~~~~~l~~ld~~~~~~i~~~~~~ 205 (249)
T TIGR03574 165 EISEN-K---LK--------IE----KPKK--PKRRTDENILNKIDKRTRQIVGELIKT 205 (249)
T ss_pred HHhhc-c---CC--------hh----hhhh--hcccccccHHHHHHHHHHHHHHHHHHh
Confidence 43321 0 00 11 1111 233455567888888877777777664
No 145
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=86.84 E-value=1.9 Score=38.87 Aligned_cols=76 Identities=20% Similarity=0.323 Sum_probs=55.3
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCC--HHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHHhh
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRD--VDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHT 79 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~--~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~ 79 (298)
++|||+++..++|-.||.+--. ++|-+ .++++++....=.-+..+=+.|.+.-.|-++=..++ ..++.++++|..
T Consensus 139 ~lKiFLtAS~e~RA~RR~~q~~-~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~--msieeVv~~il~ 215 (222)
T COG0283 139 ELKIFLTASPEERAERRYKQLQ-AKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSS--LSIEEVVEKILE 215 (222)
T ss_pred CeEEEEeCCHHHHHHHHHHHHH-hccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCC--CcHHHHHHHHHH
Confidence 6899999999999999988754 56633 688888877655667778889999999955433232 345666555554
Q ss_pred h
Q 022342 80 K 80 (298)
Q Consensus 80 ~ 80 (298)
.
T Consensus 216 ~ 216 (222)
T COG0283 216 L 216 (222)
T ss_pred H
Confidence 4
No 146
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=86.55 E-value=3.3 Score=37.05 Aligned_cols=72 Identities=14% Similarity=0.293 Sum_probs=46.5
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHHhhh
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTK 80 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~ 80 (298)
|+.+|+|.|.++.+.|--.|... +.+- |..-..+++.+|-.|.....-..+ .=++|+.... ++.+.+.|...
T Consensus 129 D~ti~Ldv~~e~al~R~~~r~~~-~~r~-E~~~~~f~~kvr~~Y~~la~~~~~-r~~vIda~~~----~e~v~~~i~~~ 200 (208)
T COG0125 129 DLTLYLDVPPEVALERIRKRGEL-RDRF-EKEDDEFLEKVREGYLELAAKFPE-RIIVIDASRP----LEEVHEEILKI 200 (208)
T ss_pred CEEEEEeCCHHHHHHHHHhcCCc-cchh-hhHHHHHHHHHHHHHHHHHhhCCC-eEEEEECCCC----HHHHHHHHHHH
Confidence 89999999999999999988665 2222 222225666788888888765554 2356665443 44444444433
No 147
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=85.63 E-value=3.3 Score=39.03 Aligned_cols=68 Identities=12% Similarity=0.257 Sum_probs=41.0
Q ss_pred eEEEEeCCchhHHHhhhhcccccCC----CC-HHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCC-chhHHHHHHH
Q 022342 3 MKIFVDTDADVRLARRIRRDTVERG----RD-VDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDN-HVAIDLIVQH 76 (298)
Q Consensus 3 ~kifvd~d~d~rl~Rri~RD~~erg----r~-~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~-~~~~~~i~~~ 76 (298)
+.||+++|.+++..|=..|+- .|. .. .+.+.+. .+.++|-|+ +||++|+++..+ ....+.|...
T Consensus 229 ~~V~L~a~~e~~~~Rl~~r~~-~rp~~~~~~~~e~i~~~-~~~R~~~y~--------~ad~~I~t~~~s~ee~~~~I~~~ 298 (309)
T PRK08154 229 YTVWLKASPEEHMARVRAQGD-LRPMADNREAMEDLRRI-LASREPLYA--------RADAVVDTSGLTVAQSLARLREL 298 (309)
T ss_pred EEEEEECCHHHHHHHHhcCCC-CCCCCCCCChHHHHHHH-HHHHHHHHH--------hCCEEEECCCCCHHHHHHHHHHH
Confidence 579999999998876555542 222 22 3444444 444777774 399999875543 2344555555
Q ss_pred Hhhh
Q 022342 77 IHTK 80 (298)
Q Consensus 77 i~~~ 80 (298)
++..
T Consensus 299 l~~~ 302 (309)
T PRK08154 299 VRPA 302 (309)
T ss_pred HHHH
Confidence 5443
No 148
>PRK07261 topology modulation protein; Provisional
Probab=85.25 E-value=0.31 Score=41.87 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=31.4
Q ss_pred CCeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHH
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQY 37 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~ 37 (298)
.|..||+|.|..+|+.|.++|+..+||++.+.+-.+.
T Consensus 79 ad~vI~Ld~p~~~~~~R~lkR~~~~rg~~r~~l~~g~ 115 (171)
T PRK07261 79 ADQIIFLNFSRFNCLYRAFKRYLKYRGKTRESMAENC 115 (171)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHHHcCCcCccccCCC
Confidence 4789999999999999999999998998766655443
No 149
>PRK13975 thymidylate kinase; Provisional
Probab=84.64 E-value=3.1 Score=35.73 Aligned_cols=73 Identities=19% Similarity=0.340 Sum_probs=40.9
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhccc---ccccceEEecCCCCC-chhHHHHHHHH
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLP---SKKYADVIIPRGGDN-HVAIDLIVQHI 77 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P---~~~~ADiii~~~~~~-~~~~~~i~~~i 77 (298)
|+.||+++|.++.+.|-..|+ ++..+- ..|.+.++..|.++... ...++.++|+....+ ....+.|.+.|
T Consensus 115 d~vi~L~~~~e~~~~Rl~~r~-----~~~~~~-~~~~~~~~~~y~~~~~~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i 188 (196)
T PRK13975 115 DLVFLLDVDIEEALKRMETRD-----KEIFEK-KEFLKKVQEKYLELANNEKFMPKYGFIVIDTTNKSIEEVFNEILNKI 188 (196)
T ss_pred CEEEEEcCCHHHHHHHHhccC-----ccccch-HHHHHHHHHHHHHHHhhcccCCcCCEEEEECCCCCHHHHHHHHHHHH
Confidence 789999999999987766554 221111 23344455556665441 114578999874332 23334444444
Q ss_pred hhh
Q 022342 78 HTK 80 (298)
Q Consensus 78 ~~~ 80 (298)
.++
T Consensus 189 ~~~ 191 (196)
T PRK13975 189 KDK 191 (196)
T ss_pred HHh
Confidence 433
No 150
>PRK07933 thymidylate kinase; Validated
Probab=84.60 E-value=2.8 Score=37.28 Aligned_cols=74 Identities=9% Similarity=0.205 Sum_probs=45.8
Q ss_pred CeEEEEeCCchhHHHhhhhcccccC--CCC-HHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHHh
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVER--GRD-VDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIH 78 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~er--gr~-~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~ 78 (298)
|+.||+|.|.++.+.|.-.|.-... +.+ .|. -..|++.++-.|..+.......--++|++ +..++.|.+.|.
T Consensus 134 Dl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~~E~-~~~f~~~v~~~Y~~~~~~~~~~~~~~ida----~~~~e~v~~~i~ 208 (213)
T PRK07933 134 DLQVLLDVPVELAAERARRRAAQDADRARDAYER-DDGLQQRTGAVYAELAAQGWGGPWLVVDP----DVDPAALAARLA 208 (213)
T ss_pred CEEEEecCCHHHHHHHHHhhccccCCcccccccc-cHHHHHHHHHHHHHHHHhcCCCCeEEeCC----CCCHHHHHHHHH
Confidence 8999999999999988666643211 111 222 23677779999988875431223356664 234566666665
Q ss_pred hh
Q 022342 79 TK 80 (298)
Q Consensus 79 ~~ 80 (298)
+.
T Consensus 209 ~~ 210 (213)
T PRK07933 209 AA 210 (213)
T ss_pred HH
Confidence 54
No 151
>PRK13976 thymidylate kinase; Provisional
Probab=84.03 E-value=2.6 Score=37.50 Aligned_cols=53 Identities=19% Similarity=0.386 Sum_probs=36.3
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecC
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPR 62 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~ 62 (298)
|+.||+|+|.++.+.|. .+ ++ .++.-.+|++.++..|.++.........+ |++
T Consensus 126 Dl~i~Ldv~~e~a~~Ri-~~----~~--~e~~~~~~l~~v~~~Y~~l~~~~~~~~~~-id~ 178 (209)
T PRK13976 126 DITFVLDIDIELSLSRA-DK----NG--YEFMDLEFYDKVRKGFREIVIKNPHRCHV-ITC 178 (209)
T ss_pred CEEEEEeCCHHHHHHHh-cc----cc--hhcccHHHHHHHHHHHHHHHHhCCCCeEE-EEC
Confidence 89999999999999986 22 22 23333456777999999998654433444 444
No 152
>PRK14737 gmk guanylate kinase; Provisional
Probab=83.26 E-value=4.2 Score=35.44 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=34.9
Q ss_pred eEEEEeCCchhHHHhhhhcccccCCC-CHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHH
Q 022342 3 MKIFVDTDADVRLARRIRRDTVERGR-DVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQH 76 (298)
Q Consensus 3 ~kifvd~d~d~rl~Rri~RD~~ergr-~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~ 76 (298)
+.|||.+|+...+.+|+. .||. +.+++-....+ ..+.. .....||.||.|. +...+...+.+.
T Consensus 118 ~~Ifi~pps~e~l~~RL~----~R~~~s~e~i~~Rl~~-~~~e~-----~~~~~~D~vI~N~-dle~a~~ql~~i 181 (186)
T PRK14737 118 VTIFIEPPSEEEWEERLI----HRGTDSEESIEKRIEN-GIIEL-----DEANEFDYKIIND-DLEDAIADLEAI 181 (186)
T ss_pred EEEEEECCCHHHHHHHHH----hcCCCCHHHHHHHHHH-HHHHH-----hhhccCCEEEECc-CHHHHHHHHHHH
Confidence 579999987555555553 2444 44444444333 43332 2357899999885 333344444333
No 153
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=82.84 E-value=4.9 Score=35.54 Aligned_cols=65 Identities=23% Similarity=0.296 Sum_probs=46.1
Q ss_pred eEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHH
Q 022342 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHI 77 (298)
Q Consensus 3 ~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i 77 (298)
..||+.+|+-..|.||+.+ ||.+-++++..-+...+-....+- ..|.+|-| .+...|...+..-|
T Consensus 116 v~IFi~pPs~eeL~~RL~~----Rgtds~e~I~~Rl~~a~~Ei~~~~-----~fdyvivN-dd~e~a~~~l~~ii 180 (191)
T COG0194 116 VSIFILPPSLEELERRLKG----RGTDSEEVIARRLENAKKEISHAD-----EFDYVIVN-DDLEKALEELKSII 180 (191)
T ss_pred EEEEEcCCCHHHHHHHHHc----cCCCCHHHHHHHHHHHHHHHHHHH-----hCCEEEEC-ccHHHHHHHHHHHH
Confidence 5799999999999999986 898888888776666665555553 37888765 33344554444333
No 154
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=82.68 E-value=4.4 Score=34.65 Aligned_cols=66 Identities=23% Similarity=0.393 Sum_probs=43.1
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHH
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQH 76 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~ 76 (298)
|+.+|+|.|.++++.|.-.|+- +.+...+-++ |.+.++-.|.+..+ ...-=+||++.. .++.+.+.
T Consensus 120 Dl~~~Ldv~pe~~~~R~~~r~~--~~~~~~~~~~-~~~~~~~~y~~l~~--~~~~~~iid~~~----~~e~v~~~ 185 (186)
T PF02223_consen 120 DLTFFLDVDPEEALKRIAKRGE--KDDEEEEDLE-YLRRVREAYLELAK--DPNNWVIIDASR----SIEEVHEQ 185 (186)
T ss_dssp SEEEEEECCHHHHHHHHHHTSS--TTTTTTHHHH-HHHHHHHHHHHHHH--TTTTEEEEETTS-----HHHHHHH
T ss_pred CEEEEEecCHHHHHHHHHcCCc--cchHHHHHHH-HHHHHHHHHHHHHc--CCCCEEEEECCC----CHHHHHhh
Confidence 8999999999999999999987 3344444444 44457778888876 222225555522 25555444
No 155
>PRK06762 hypothetical protein; Provisional
Probab=82.01 E-value=5 Score=33.56 Aligned_cols=64 Identities=14% Similarity=0.095 Sum_probs=37.3
Q ss_pred eEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHHhhh
Q 022342 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTK 80 (298)
Q Consensus 3 ~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~ 80 (298)
..||+++|.++++.|...|+. .++.+.+.+-++|.. +-.+ ..||.+++..+ ..++.+.+.|.+.
T Consensus 98 ~~v~Ldap~e~~~~R~~~R~~-~~~~~~~~l~~~~~~--------~~~~--~~~~~~~~~~~---~~~~~v~~~i~~~ 161 (166)
T PRK06762 98 YTYYFDLSFEETLRRHSTRPK-SHEFGEDDMRRWWNP--------HDTL--GVIGETIFTDN---LSLKDIFDAILTD 161 (166)
T ss_pred EEEEEeCCHHHHHHHHhcccc-cccCCHHHHHHHHhh--------cCCc--CCCCeEEecCC---CCHHHHHHHHHHH
Confidence 579999999999999999975 234444444444333 2222 12455665433 3455555555443
No 156
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=81.58 E-value=4.4 Score=34.30 Aligned_cols=47 Identities=23% Similarity=0.417 Sum_probs=30.1
Q ss_pred CeEEEEeCCchhHHHhhhhcccc-cCCCC-HH---HHHHHHHhhhhhHHHhh
Q 022342 2 NMKIFVDTDADVRLARRIRRDTV-ERGRD-VD---SVLEQYAKFVKPAFDDF 48 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~-ergr~-~~---~v~~~~~~~~~p~~~~~ 48 (298)
|+.||+++|.++.+.|...|... .|-.+ .+ .-+..|.....|.++.|
T Consensus 108 ~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y 159 (188)
T TIGR01360 108 TLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYY 159 (188)
T ss_pred CEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHH
Confidence 67899999999988888777642 22222 22 23344555566766666
No 157
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=81.54 E-value=3.9 Score=44.17 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=53.9
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEE-ecCCCCCchhHHHHHHHHhhh
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVI-IPRGGDNHVAIDLIVQHIHTK 80 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADii-i~~~~~~~~~~~~i~~~i~~~ 80 (298)
|+|||++++.++|-.||..--.. .-+.++++++..+.=+-+..+=+.|.+.-.|-| |++ +. ..++.+++.|.+.
T Consensus 208 ~~KifL~As~e~RA~RR~~e~~~--~~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iDt-s~--l~ieevv~~i~~~ 282 (863)
T PRK12269 208 DLKCYLDASIEARVARRWAQGTS--RLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDT-SC--LTIEEVCERIARE 282 (863)
T ss_pred CEEEEEECCHHHHHHHHHHhhhc--cCCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEEC-CC--CCHHHHHHHHHHH
Confidence 79999999999999999765442 378999999876644556667789999998855 444 32 3355555555444
Q ss_pred cc
Q 022342 81 LG 82 (298)
Q Consensus 81 l~ 82 (298)
..
T Consensus 283 ~~ 284 (863)
T PRK12269 283 AH 284 (863)
T ss_pred HH
Confidence 33
No 158
>PRK13973 thymidylate kinase; Provisional
Probab=81.11 E-value=5.4 Score=35.29 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=18.8
Q ss_pred CeEEEEeCCchhHHHhhhhcc
Q 022342 2 NMKIFVDTDADVRLARRIRRD 22 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD 22 (298)
|+.+|+|+|.++.+.|-..|.
T Consensus 130 D~vi~Ldv~~e~~~~Rl~~R~ 150 (213)
T PRK13973 130 DLTLILDIPAEVGLERAAKRR 150 (213)
T ss_pred CEEEEEeCCHHHHHHHHHhcc
Confidence 889999999999999977774
No 159
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=80.54 E-value=5 Score=32.73 Aligned_cols=54 Identities=20% Similarity=0.310 Sum_probs=32.1
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCH--HHHHHHHHhhhhhHHHhhcccccccceEEecCC
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDV--DSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRG 63 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~--~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~ 63 (298)
.+.||+++|.+++..|-..|+..--+... +.+.+-|++ +++.|. +.||++|+..
T Consensus 93 ~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~~~~~~~~~-r~~~Y~-------~~ad~~i~~~ 148 (154)
T cd00464 93 GIVVWLDASPEELLERLARDKTRPLLQDEDPERLRELLEE-REPLYR-------EVADLTIDTD 148 (154)
T ss_pred CeEEEEeCCHHHHHHHhccCCCCCCCCCCCHHHHHHHHHH-HHHHHH-------HhCcEEEECC
Confidence 36899999999887776566421112111 234444443 445554 4499999764
No 160
>PRK08356 hypothetical protein; Provisional
Probab=80.04 E-value=6 Score=34.37 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=31.1
Q ss_pred eEEEEeCCchhHHHhhhhcccccC--CCCHHHHHHHHHhhhhhHHHhhcccccccceEEecC
Q 022342 3 MKIFVDTDADVRLARRIRRDTVER--GRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPR 62 (298)
Q Consensus 3 ~kifvd~d~d~rl~Rri~RD~~er--gr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~ 62 (298)
..||+++|.++++.|-..|+...+ ..+.+++..- .......|.. .-..+.||++|.|
T Consensus 117 ~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~-~~~~~~l~~~--~~~~~~aD~vI~N 175 (195)
T PRK08356 117 KVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKF-DEWEEKLYHT--TKLKDKADFVIVN 175 (195)
T ss_pred EEEEEECCHHHHHHHHHhcCCccccccccHHHHHHH-HHHHHHhhhh--hhHHHhCcEEEEC
Confidence 579999999887776556654322 1234444332 2212222221 1123689999976
No 161
>PRK00300 gmk guanylate kinase; Provisional
Probab=79.61 E-value=6.8 Score=33.90 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=42.7
Q ss_pred eEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHHhhhcc
Q 022342 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTKLG 82 (298)
Q Consensus 3 ~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~l~ 82 (298)
+.||+.++++..+.+|+. +||++-++.+.++.+..+... ++. +.+|.+|.+. .++...+.+...+.
T Consensus 118 ~~I~i~~~s~~~l~~Rl~----~R~~~~~~~i~~rl~~~~~~~----~~~-~~~d~vi~n~-----~~e~~~~~l~~il~ 183 (205)
T PRK00300 118 VSIFILPPSLEELERRLR----GRGTDSEEVIARRLAKAREEI----AHA-SEYDYVIVND-----DLDTALEELKAIIR 183 (205)
T ss_pred EEEEEECcCHHHHHHHHH----hcCCCCHHHHHHHHHHHHHHH----HhH-HhCCEEEECC-----CHHHHHHHHHHHHH
Confidence 568898888888888876 578777777777776554332 332 4589999742 24555555554443
No 162
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=78.82 E-value=7.3 Score=33.35 Aligned_cols=57 Identities=16% Similarity=0.264 Sum_probs=36.9
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCC
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRG 63 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~ 63 (298)
|+.||++++.++.+.|...|+-.. ..+.--..|.+.++..|..+.+- ....++|++.
T Consensus 129 d~~i~l~~~~~~~~~R~~~r~~~~---~~~~~~~~~~~~~~~~y~~~~~~--~~~~~~id~~ 185 (195)
T TIGR00041 129 DLTIYLDIDPEVALERLRKRGELD---REEFEKLDFFEKVRQRYLELADK--EKSIHVIDAT 185 (195)
T ss_pred CEEEEEeCCHHHHHHHHHhcCCcc---hHHHHHHHHHHHHHHHHHHHHcC--CCcEEEEeCC
Confidence 789999999999999988775421 11112233555566667777654 3356777663
No 163
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=77.91 E-value=8.3 Score=32.99 Aligned_cols=64 Identities=25% Similarity=0.442 Sum_probs=36.8
Q ss_pred eEEEEeCCchhHHHhhhhcccccCCCCHH-HHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHH
Q 022342 3 MKIFVDTDADVRLARRIRRDTVERGRDVD-SVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHI 77 (298)
Q Consensus 3 ~kifvd~d~d~rl~Rri~RD~~ergr~~~-~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i 77 (298)
+.|||.+++...|.+|+.+ ||.+-+ .+..+... ..-.+. -... .|.+|.+. +-+.+...|.+.|
T Consensus 116 ~~IfI~~~s~~~l~~~l~~----r~~~~~~~i~~r~~~-~~~~~~----~~~~-fd~vi~n~-~le~~~~~l~~ii 180 (183)
T PF00625_consen 116 IVIFIKPPSPEVLKRRLRR----RGDESEEEIEERLER-AEKEFE----HYNE-FDYVIVND-DLEEAVKELKEII 180 (183)
T ss_dssp EEEEEEESSHHHHHHHHHT----TTHCHHHHHHHHHHH-HHHHHG----GGGG-SSEEEECS-SHHHHHHHHHHHH
T ss_pred eEEEEEccchHHHHHHHhc----cccccHHHHHHHHHH-HHHHHh----Hhhc-CCEEEECc-CHHHHHHHHHHHH
Confidence 4799999999999999754 666544 34444332 322233 2222 89999863 3233444444333
No 164
>PLN02924 thymidylate kinase
Probab=77.62 E-value=6.4 Score=35.33 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=39.5
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHHhh
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHT 79 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~ 79 (298)
|+.||+|+|.++.+.|.-. ++...++ ..|++.++-.|.++..+ .-.+|++...-..-.+.|.+.|.+
T Consensus 137 Dlvi~Ld~~~~~a~~R~~~-----~~~~~E~--~~~~~rv~~~Y~~la~~----~~~vIDa~~sieeV~~~I~~~I~~ 203 (220)
T PLN02924 137 DLVLYLDISPEEAAERGGY-----GGERYEK--LEFQKKVAKRFQTLRDS----SWKIIDASQSIEEVEKKIREVVLD 203 (220)
T ss_pred CEEEEEeCCHHHHHHHhcc-----Ccccccc--HHHHHHHHHHHHHHhhc----CEEEECCCCCHHHHHHHHHHHHHH
Confidence 8999999999999987421 1222333 35677789999988652 224566532222222334444443
No 165
>PRK13808 adenylate kinase; Provisional
Probab=77.14 E-value=10 Score=36.40 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=18.1
Q ss_pred CCeEEEEeCCchhHHHhhhhc
Q 022342 1 MNMKIFVDTDADVRLARRIRR 21 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~R 21 (298)
.|+.||+|.|.++.+.|-..|
T Consensus 107 PDlVI~LDVp~evll~Rl~~R 127 (333)
T PRK13808 107 LDAVVELRVNEGALLARVETR 127 (333)
T ss_pred cCeEEEEECCHHHHHHHHHcC
Confidence 388999999999998887766
No 166
>PRK14527 adenylate kinase; Provisional
Probab=76.38 E-value=6.6 Score=33.89 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=39.5
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCC--CHHHHH----HHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHH
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGR--DVDSVL----EQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQ 75 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr--~~~~v~----~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~ 75 (298)
++.||+++|.++++.|-..|-.. +|| +-++++ +.|.+...|--+.|-+. .. =..|++ .-.++.+.+
T Consensus 113 ~~vi~l~~~~~~~~~Rl~~R~~~-~~r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~-~~--~~~id~----~~~~~~v~~ 184 (191)
T PRK14527 113 LAVVLLEVPDEELIRRIVERARQ-EGRSDDNEETVRRRQQVYREQTQPLVDYYEAR-GH--LKRVDG----LGTPDEVYA 184 (191)
T ss_pred CEEEEEECCHHHHHHHHHcCccc-CCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhc-CC--EEEEEC----CCCHHHHHH
Confidence 56789999999999998888543 333 323333 44444444444433221 11 134554 223556666
Q ss_pred HHhhhc
Q 022342 76 HIHTKL 81 (298)
Q Consensus 76 ~i~~~l 81 (298)
.|...|
T Consensus 185 ~i~~~l 190 (191)
T PRK14527 185 RILKAL 190 (191)
T ss_pred HHHHhh
Confidence 665543
No 167
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=76.10 E-value=7.7 Score=32.82 Aligned_cols=62 Identities=24% Similarity=0.356 Sum_probs=33.7
Q ss_pred eEEEEeCCchhHHHhhhhcccccCCC-CHHHHHHHHHhhhhhHHHhhcccccccceEE-ecCCCCCchhHHHHHHHHhhh
Q 022342 3 MKIFVDTDADVRLARRIRRDTVERGR-DVDSVLEQYAKFVKPAFDDFVLPSKKYADVI-IPRGGDNHVAIDLIVQHIHTK 80 (298)
Q Consensus 3 ~kifvd~d~d~rl~Rri~RD~~ergr-~~~~v~~~~~~~~~p~~~~~i~P~~~~ADii-i~~~~~~~~~~~~i~~~i~~~ 80 (298)
+.||+++|.++...|=..| ++ +.+.+...+. ..+.|.. ..||++ ++++. .++.+.+.|.+.
T Consensus 113 ~~i~l~~~~~~~~~Rl~~R-----~~~~~~~~~~rl~--~~~~~~~------~~~~~~vi~~~~----~~ee~~~~i~~~ 175 (179)
T TIGR02322 113 LVVNITASPDVLAQRLAAR-----GRESREEIEERLA--RSARFAA------APADVTTIDNSG----SLEVAGETLLRL 175 (179)
T ss_pred EEEEEECCHHHHHHHHHHc-----CCCCHHHHHHHHH--HHhhccc------ccCCEEEEeCCC----CHHHHHHHHHHH
Confidence 5789999998877775554 34 4444444432 2232221 457777 54422 244555555544
Q ss_pred c
Q 022342 81 L 81 (298)
Q Consensus 81 l 81 (298)
+
T Consensus 176 l 176 (179)
T TIGR02322 176 L 176 (179)
T ss_pred H
Confidence 4
No 168
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=76.10 E-value=11 Score=32.46 Aligned_cols=66 Identities=18% Similarity=0.269 Sum_probs=40.0
Q ss_pred eEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHHh
Q 022342 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIH 78 (298)
Q Consensus 3 ~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~ 78 (298)
+.||+.+++...|.+|+.. ||.+-++.+++-.....-... . ....|.+|.+. +-..+.+.+.+.|.
T Consensus 116 ~vIfi~~~s~~~l~~rl~~----R~~~~~~~i~~rl~~a~~~~~---~--~~~fd~~I~n~-~l~~~~~~l~~~i~ 181 (184)
T smart00072 116 IVIFIAPPSSEELERRLRG----RGTETAERIQKRLAAAQKEAQ---E--YHLFDYVIVND-DLEDAYEELKEILE 181 (184)
T ss_pred EEEEEeCcCHHHHHHHHHh----cCCCCHHHHHHHHHHHHHHHh---h--hccCCEEEECc-CHHHHHHHHHHHHH
Confidence 6799999998889888874 676555545443332322222 1 25689999874 33345555544443
No 169
>PF15610 PRTase_3: PRTase ComF-like
Probab=76.07 E-value=5 Score=37.34 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=31.1
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCC
Q 022342 207 DISERHVLLLDPVLATGNSANQAIQLLIEKGVP 239 (298)
Q Consensus 207 ~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~ 239 (298)
.++||.+|++||+.-||+..-+..+.+++.|+.
T Consensus 135 ~l~gk~lIflDDIkITGshE~~V~~~~~~~~~~ 167 (274)
T PF15610_consen 135 FLSGKHLIFLDDIKITGSHEDKVRKILKEYGLE 167 (274)
T ss_pred HhCCcEEEEeccEEecCcHHHHHHHHHHHcCcc
Confidence 468999999999999999999999999999995
No 170
>PLN02200 adenylate kinase family protein
Probab=75.62 E-value=7.3 Score=35.25 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=39.5
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCHHH----HHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHH
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDS----VLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHI 77 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~~~----v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i 77 (298)
|+.||+++|.++.+.|...|.. .|-.+-++ .++.|.....|..+.|=++ .-=+.|++.+ .++.+.+.+
T Consensus 147 d~vi~Ld~~~e~~~~Rl~~R~~-~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~---~~~~~IDa~~----~~eeV~~~v 218 (234)
T PLN02200 147 NVVLFFDCPEEEMVKRVLNRNQ-GRVDDNIDTIKKRLKVFNALNLPVIDYYSKK---GKLYTINAVG----TVDEIFEQV 218 (234)
T ss_pred CEEEEEECCHHHHHHHHHcCcC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc---CCEEEEECCC----CHHHHHHHH
Confidence 7889999999999999888854 22222122 2344555444444433221 0114566533 345555555
Q ss_pred hhhcc
Q 022342 78 HTKLG 82 (298)
Q Consensus 78 ~~~l~ 82 (298)
.+.+.
T Consensus 219 ~~~l~ 223 (234)
T PLN02200 219 RPIFA 223 (234)
T ss_pred HHHHH
Confidence 54443
No 171
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=75.59 E-value=16 Score=30.91 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=19.9
Q ss_pred CeEEEEeCCchhHHHhhhhcccc
Q 022342 2 NMKIFVDTDADVRLARRIRRDTV 24 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ 24 (298)
|+.||+++|.++.+.|-..|...
T Consensus 105 d~~i~l~~~~~~~~~Rl~~R~~~ 127 (183)
T TIGR01359 105 KFVLFFDCPEEVMIKRLLKRGQS 127 (183)
T ss_pred CEEEEEECCHHHHHHHHhcCCcc
Confidence 67899999999999998888653
No 172
>PRK02496 adk adenylate kinase; Provisional
Probab=75.00 E-value=6.1 Score=33.73 Aligned_cols=70 Identities=21% Similarity=0.322 Sum_probs=37.1
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCHHHH----HHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHH
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSV----LEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHI 77 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v----~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i 77 (298)
|+.||+++|.++...|-..|. |..+.++. ++.|.+...|-.+.|-++ ..=+.|++.+ .++.+.+.|
T Consensus 109 ~~vi~l~~~~~~~~~Rl~~R~---~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~---~~~~~Ida~~----~~~~V~~~i 178 (184)
T PRK02496 109 ERVVNLDVPDDVVVERLLARG---RKDDTEEVIRRRLEVYREQTAPLIDYYRDR---QKLLTIDGNQ----SVEAVTTEL 178 (184)
T ss_pred CEEEEEeCCHHHHHHHHhcCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHhc---CCEEEEECCC----CHHHHHHHH
Confidence 678999999999887766662 22233333 344444444443333111 1115566533 355555555
Q ss_pred hhhc
Q 022342 78 HTKL 81 (298)
Q Consensus 78 ~~~l 81 (298)
.+.+
T Consensus 179 ~~~l 182 (184)
T PRK02496 179 KAAL 182 (184)
T ss_pred HHHh
Confidence 5443
No 173
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=73.28 E-value=15 Score=30.63 Aligned_cols=65 Identities=22% Similarity=0.434 Sum_probs=37.9
Q ss_pred eEEEEeCCchhHHHhhhhcccccC----CCCH-HHHHHHHHhhhhhHHHhhcccccccceEEecCCCCC-chhHHHHHHH
Q 022342 3 MKIFVDTDADVRLARRIRRDTVER----GRDV-DSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDN-HVAIDLIVQH 76 (298)
Q Consensus 3 ~kifvd~d~d~rl~Rri~RD~~er----gr~~-~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~-~~~~~~i~~~ 76 (298)
..||++.|.+.-.. |+..+-. | +... ++..+.+. .+.|.|+++ ||++++..... ...++.|++.
T Consensus 87 ~vI~L~~~~~~l~~-Rl~~~~~-Rp~l~~~~~~~~~~~~~~-~R~~~Y~~~-------a~~~v~~~~~~~~~i~~~i~~~ 156 (158)
T PF01202_consen 87 LVIYLDADPEELAE-RLRARDN-RPLLKGKMEHEEILELLF-EREPLYEQA-------ADIVVDTDGSPPEEIAEEILEF 156 (158)
T ss_dssp EEEEEE--HHHHHH-HHHHHCT-SGGTCSHHHHHHHHHHHH-HHHHHHHHH-------SSEEEETSSCHHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHH-HHhCCCC-CCCCCCCChHHHHHHHHH-HHHHHHHhc-------CeEEEeCCCCCHHHHHHHHHHH
Confidence 57999999997544 4444332 3 2222 24555555 578888876 89999885555 3444555554
Q ss_pred H
Q 022342 77 I 77 (298)
Q Consensus 77 i 77 (298)
|
T Consensus 157 l 157 (158)
T PF01202_consen 157 L 157 (158)
T ss_dssp H
T ss_pred h
Confidence 4
No 174
>PRK14531 adenylate kinase; Provisional
Probab=72.71 E-value=7.9 Score=33.22 Aligned_cols=70 Identities=23% Similarity=0.361 Sum_probs=37.9
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCHHHH----HHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHH
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSV----LEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHI 77 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v----~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i 77 (298)
|+-||+++|.++...|-..|- |..+-+++ ++.|.....|.-+-|-. +.. =..|++. ..++.+...|
T Consensus 109 ~~vi~l~~~~~~l~~Rl~~R~---r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~--~~~-~~~id~~----~~~~~v~~~i 178 (183)
T PRK14531 109 EAVVLLELDDAVLIERLLARG---RADDNEAVIRNRLEVYREKTAPLIDHYRQ--RGL-LQSVEAQ----GSIEAITERI 178 (183)
T ss_pred CeEEEEECCHHHHHHHhhcCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHh--cCC-EEEEECC----CCHHHHHHHH
Confidence 678999999999888766662 33344454 34454444554433311 111 1345542 2355666666
Q ss_pred hhhc
Q 022342 78 HTKL 81 (298)
Q Consensus 78 ~~~l 81 (298)
.+.|
T Consensus 179 ~~~l 182 (183)
T PRK14531 179 EKVL 182 (183)
T ss_pred HHHh
Confidence 5543
No 175
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=67.73 E-value=25 Score=28.77 Aligned_cols=51 Identities=24% Similarity=0.473 Sum_probs=40.2
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCCc
Q 022342 207 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSL 265 (298)
Q Consensus 207 ~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~~p~v 265 (298)
++++++|+|+ .+|++..+++..|.++|+ ++|.+++ =+.+-.+.+.+.++..
T Consensus 9 ~l~~~~vlvi----GaGg~ar~v~~~L~~~g~--~~i~i~n--Rt~~ra~~l~~~~~~~ 59 (135)
T PF01488_consen 9 DLKGKRVLVI----GAGGAARAVAAALAALGA--KEITIVN--RTPERAEALAEEFGGV 59 (135)
T ss_dssp TGTTSEEEEE----SSSHHHHHHHHHHHHTTS--SEEEEEE--SSHHHHHHHHHHHTGC
T ss_pred CcCCCEEEEE----CCHHHHHHHHHHHHHcCC--CEEEEEE--CCHHHHHHHHHHcCcc
Confidence 6789999875 579999999999999999 6787776 2556677777777543
No 176
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=66.83 E-value=22 Score=30.44 Aligned_cols=63 Identities=13% Similarity=0.215 Sum_probs=33.7
Q ss_pred EEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccce-EEecCCCCCchhHHHHHHHHhhhcc
Q 022342 4 KIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYAD-VIIPRGGDNHVAIDLIVQHIHTKLG 82 (298)
Q Consensus 4 kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~AD-iii~~~~~~~~~~~~i~~~i~~~l~ 82 (298)
-||+++|.++...|=..|+ +.+.+.+.+.+.+ .+. | ..|| +||++.. .++.+.+.|...|.
T Consensus 114 vi~l~~s~e~l~~RL~~R~----~~~~~~i~~rl~r--~~~---~-----~~ad~~vi~~~~----s~ee~~~~i~~~l~ 175 (186)
T PRK10078 114 PVCLQVSPEILRQRLENRG----RENASEINARLAR--AAR---Y-----QPQDCHTLNNDG----SLRQSVDTLLTLLH 175 (186)
T ss_pred EEEEeCCHHHHHHHHHHhC----CCCHHHHHHHHHH--hhh---h-----ccCCEEEEeCCC----CHHHHHHHHHHHHh
Confidence 5889999888655554552 2244555555422 221 1 1366 6776532 34555555555555
Q ss_pred cc
Q 022342 83 QH 84 (298)
Q Consensus 83 ~~ 84 (298)
.+
T Consensus 176 ~~ 177 (186)
T PRK10078 176 LS 177 (186)
T ss_pred hc
Confidence 43
No 177
>PRK14528 adenylate kinase; Provisional
Probab=64.31 E-value=17 Score=31.39 Aligned_cols=48 Identities=23% Similarity=0.408 Sum_probs=30.4
Q ss_pred CCeEEEEeCCchhHHHhhhhccccc-CCCCHHHHH----HHHHhhhhhHHHhh
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTVE-RGRDVDSVL----EQYAKFVKPAFDDF 48 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~e-rgr~~~~v~----~~~~~~~~p~~~~~ 48 (298)
.|+.|++|+|.++++.|-..|-... |..+-++++ ++|.....|.-+.|
T Consensus 108 ~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~y 160 (186)
T PRK14528 108 IDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFY 160 (186)
T ss_pred CCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 3789999999999998888774432 333334444 33445555555544
No 178
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=62.52 E-value=19 Score=28.12 Aligned_cols=63 Identities=16% Similarity=0.314 Sum_probs=45.6
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHc---CCCCccEEEEEEEeCHHHHHHHHHhCCCcEEEEE
Q 022342 207 DISERHVLLLDPVLATGNSANQAIQLLIEK---GVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTS 270 (298)
Q Consensus 207 ~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~---g~~~~~I~vv~~vas~~gl~~l~~~~p~v~i~~a 270 (298)
+.++-.++++-----|..+-.++++.|++. +-+...|++...++...+ +.+.+.+|+|.+|.+
T Consensus 33 ~~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~aq~~~-~~l~~~~p~vd~v~G 98 (98)
T PF00919_consen 33 DPEEADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGCMAQRYG-EELKKEFPEVDLVVG 98 (98)
T ss_pred ccccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCccccCh-HHHHhhCCCeEEEeC
Confidence 446778999999999999888887777653 312234555556776666 778899999988864
No 179
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=62.43 E-value=14 Score=34.82 Aligned_cols=67 Identities=19% Similarity=0.376 Sum_probs=40.1
Q ss_pred EEEEeCCchhHHHhhhh-ccc---ccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHHhh
Q 022342 4 KIFVDTDADVRLARRIR-RDT---VERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHT 79 (298)
Q Consensus 4 kifvd~d~d~rl~Rri~-RD~---~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~ 79 (298)
.||+|++.++-+.|--. |-. ...|..++. |+ ...+.++|.++.||+||+.++-+. ..+.+.|.+
T Consensus 85 ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~-I~--------~Er~~L~~lr~~Ad~vIDTs~l~~---~~Lr~~i~~ 152 (284)
T PF03668_consen 85 ILFLDASDEVLIRRYSETRRRHPLSSDGSLLEA-IE--------KERELLEPLRERADLVIDTSNLSV---HQLRERIRE 152 (284)
T ss_pred EEEEECChHHHHHHHHhccCCCCCCCCCCcHHH-HH--------HHHHHHHHHHHhCCEEEECCCCCH---HHHHHHHHH
Confidence 48999998886655421 111 112333333 22 246778999999999999866554 344444444
Q ss_pred hcc
Q 022342 80 KLG 82 (298)
Q Consensus 80 ~l~ 82 (298)
.+.
T Consensus 153 ~~~ 155 (284)
T PF03668_consen 153 RFG 155 (284)
T ss_pred Hhc
Confidence 443
No 180
>PRK05541 adenylylsulfate kinase; Provisional
Probab=61.87 E-value=2.8 Score=35.54 Aligned_cols=68 Identities=15% Similarity=0.267 Sum_probs=33.3
Q ss_pred eEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCC-C-chhHHHHHHHHhhh
Q 022342 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGD-N-HVAIDLIVQHIHTK 80 (298)
Q Consensus 3 ~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~-~-~~~~~~i~~~i~~~ 80 (298)
+.||+++|.++.+.| +.|... ++...+ -+.+......|.|+ | .||++|++.+. . ...++.+.+.+..+
T Consensus 104 ~~v~l~~~~e~~~~R-~~~~l~-~~~~~~-~~~~~~~~~~~~~~----~---~Ad~vI~~~~~~~~~~~v~~i~~~l~~~ 173 (176)
T PRK05541 104 FEVYLKCDMEELIRR-DQKGLY-TKALKG-EIKNVVGVDIPFDE----P---KADLVIDNSCRTSLDEKVDLILNKLKLR 173 (176)
T ss_pred EEEEEeCCHHHHHHh-chhhHH-HHHHcC-cccccccCCCcccC----C---CCCEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 578999999976666 333211 111111 12222222344333 2 38999998641 1 23344555555443
No 181
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=60.65 E-value=16 Score=32.26 Aligned_cols=43 Identities=23% Similarity=0.448 Sum_probs=30.3
Q ss_pred CeEEEEeCCchhHHHhhhhccccc-C-CCCHHHHHHH---HHhhhhhH
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVE-R-GRDVDSVLEQ---YAKFVKPA 44 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~e-r-gr~~~~v~~~---~~~~~~p~ 44 (298)
|+.+|+|++.|+++.|-+.|+... | -.+.+++..+ |.+.-.|.
T Consensus 114 ~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pv 161 (195)
T KOG3079|consen 114 DFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPV 161 (195)
T ss_pred CEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchHH
Confidence 789999999999999999999874 3 2334444433 44444454
No 182
>PF09960 DUF2194: Uncharacterized protein conserved in bacteria (DUF2194); InterPro: IPR018695 This family of prokaryotic proteins has no known function; however it may be a membrane protein.
Probab=59.09 E-value=28 Score=36.10 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=34.8
Q ss_pred HHHHHHHHHH----HHcCCCCccEEEEEE--EeCHHHHHHHHHhCCCcEEEEEeecCCCC
Q 022342 224 NSANQAIQLL----IEKGVPESHIIFLNL--ISAPEGIHCVCKRFPSLKIVTSEIDVALN 277 (298)
Q Consensus 224 ~t~~~ai~~L----~~~g~~~~~I~vv~~--vas~~gl~~l~~~~p~v~i~~a~id~~l~ 277 (298)
..|..+++.| ++.++..+-.+.|.+ +.+++|.+.|.++||+++++++.=..+-.
T Consensus 373 ~~m~~sl~~l~~f~~~l~p~~~~~~YVPPSNils~eG~e~L~~~~P~ik~IaS~Y~~~~~ 432 (585)
T PF09960_consen 373 EDMAESLKELKRFVKSLFPNYEPSSYVPPSNILSEEGREALKKAFPEIKTIASLYFGDDE 432 (585)
T ss_pred HHHHHHHHHHHHHHHHhCCCcceEEecCCccccCHHHHHHHHHhCCCeEEEEEeeecCCc
Confidence 3445555544 455653222222222 77999999999999999988876655544
No 183
>PRK03846 adenylylsulfate kinase; Provisional
Probab=58.90 E-value=4.4 Score=35.27 Aligned_cols=14 Identities=43% Similarity=0.593 Sum_probs=12.6
Q ss_pred EEEEeCCchhHHHh
Q 022342 4 KIFVDTDADVRLAR 17 (298)
Q Consensus 4 kifvd~d~d~rl~R 17 (298)
.||+++|.+++..|
T Consensus 125 ~V~L~~~~e~~~~R 138 (198)
T PRK03846 125 EVFVDTPLAICEAR 138 (198)
T ss_pred EEEEcCCHHHHHhc
Confidence 69999999998887
No 184
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=58.61 E-value=42 Score=27.05 Aligned_cols=63 Identities=22% Similarity=0.378 Sum_probs=39.0
Q ss_pred CCccceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccc--hH--HHHHHHHHHHHcCCCCccEEEEEE
Q 022342 181 GIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLAT--GN--SANQAIQLLIEKGVPESHIIFLNL 248 (298)
Q Consensus 181 ~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lAT--G~--t~~~ai~~L~~~g~~~~~I~vv~~ 248 (298)
+++.+.+-..|=++. ..|.+++.++.|+.|+|+=.+... -. .+.-.++.+++.|+ ++|+++.+
T Consensus 21 ~~~~~~~~~~~F~dG---E~~v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a--~~i~~ViP 87 (116)
T PF13793_consen 21 GIPLGKVETKRFPDG---ETYVRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGA--KRITLVIP 87 (116)
T ss_dssp TS-EE-EEEEE-TTS----EEEEESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTB--SEEEEEES
T ss_pred CCceeeeEEEEcCCC---CEEEEecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCC--cEEEEecc
Confidence 455565555443222 467888989999999999888765 22 45667888999999 78988875
No 185
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=57.12 E-value=25 Score=25.55 Aligned_cols=45 Identities=24% Similarity=0.334 Sum_probs=32.7
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCC
Q 022342 209 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFP 263 (298)
Q Consensus 209 ~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~~p 263 (298)
+++.|++.+ .+|.....+...|++.|. +++.++ ..|++.+.+.++
T Consensus 55 ~~~~iv~~c---~~g~~a~~~~~~l~~~G~--~~v~~l-----~GG~~~w~~~~~ 99 (100)
T smart00450 55 KDKPVVVYC---RSGNRSAKAAWLLRELGF--KNVYLL-----DGGYKEWSAAGP 99 (100)
T ss_pred CCCeEEEEe---CCCcHHHHHHHHHHHcCC--CceEEe-----cCCHHHHHhcCC
Confidence 467888887 678888999999999998 454332 456777766554
No 186
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=56.97 E-value=45 Score=31.27 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=34.9
Q ss_pred EEEEeCCchhHHHhhhhcccccCCCCHH---HHHHHHHhhhhhHHHhhcccccccceEEecCCCCCch-hHHHHHHHH
Q 022342 4 KIFVDTDADVRLARRIRRDTVERGRDVD---SVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHV-AIDLIVQHI 77 (298)
Q Consensus 4 kifvd~d~d~rl~Rri~RD~~ergr~~~---~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~-~~~~i~~~i 77 (298)
-||++++.++.+.| +.... |.|++. +..+...+ .....+|.++.||++|++.+.+.. ..+.|.+.+
T Consensus 89 iI~L~a~~e~L~~R-l~~~r--r~RPLl~~~~l~e~I~~-----eR~~l~pl~~~ADivIDTs~ls~~el~e~I~~~l 158 (288)
T PRK05416 89 VLFLDASDEVLIRR-YSETR--RRHPLSGDGSLLEGIEL-----ERELLAPLRERADLVIDTSELSVHQLRERIRERF 158 (288)
T ss_pred EEEEECCHHHHHHH-Hhhcc--cCCCccCCccHHHHHHH-----HHhhhhhHHHhCCEEEECCCCCHHHHHHHHHHHH
Confidence 48999999987755 43211 112211 12222222 122356677889999987654432 223444444
No 187
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=56.36 E-value=61 Score=30.03 Aligned_cols=106 Identities=20% Similarity=0.293 Sum_probs=52.5
Q ss_pred eEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccc----eEEecCCCCCchhHHHHHHHHh
Q 022342 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYA----DVIIPRGGDNHVAIDLIVQHIH 78 (298)
Q Consensus 3 ~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~A----Diii~~~~~~~~~~~~i~~~i~ 78 (298)
+.||++++.|.++.|...|.-.+| =.+++++. ++.+|-.|...+. -+.|+. .+....++.|.+.|.
T Consensus 101 c~i~~~~~~e~~~~~N~~R~~~~~--~~~e~i~~-------m~~RfE~P~~~nrWD~plf~i~~-~~~~~~~~~I~~~l~ 170 (270)
T PF08433_consen 101 CVIYCDCPLETCLQRNSKRPEPER--YPEETIDD-------MIQRFEEPDPKNRWDSPLFTIDS-SDEELPLEEIWNALF 170 (270)
T ss_dssp EEEEEE--HHHHHHHHHHTT-S----S-HHHHHH-------HHHH---TTSS-GGGS-SEEEE--TTS---HHHHHHHHH
T ss_pred EEEEECCCHHHHHHhhhccCCCCC--CCHHHHHH-------HHHHhcCCCCCCCccCCeEEEec-CCCCCCHHHHHHHHH
Confidence 569999999999999988875433 34444444 4567777777543 477765 444456677777762
Q ss_pred hhccccccccCCCceeeccchHHHHHHhHhhhcCCCChhhHHHHHHHHHHHHHHHHhCCC
Q 022342 79 TKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHL 138 (298)
Q Consensus 79 ~~l~~~~l~~~~~~l~vl~~~~~l~~llt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~l 138 (298)
.. .. ..+|..... +......|.+-+|+.++-++-+.++..
T Consensus 171 ~~---~~---~~pn~~t~~--------------~~~~~~n~lh~lD~~tr~iv~~il~~~ 210 (270)
T PF08433_consen 171 EN---KP---LPPNQATQS--------------KPLSSTNFLHELDKITREIVSEILKAQ 210 (270)
T ss_dssp HH---HT---S--SSSTT---------------------HHHHHHHHHHHHHHHHHHH--
T ss_pred hc---CC---CCCCccccC--------------CCCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 11 11 112221111 112355788888888887777776643
No 188
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=55.62 E-value=48 Score=33.90 Aligned_cols=66 Identities=20% Similarity=0.287 Sum_probs=39.9
Q ss_pred eEEEEeCCchhHHHhhhhcccccC----CCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCc-hhHHHHHHHH
Q 022342 3 MKIFVDTDADVRLARRIRRDTVER----GRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNH-VAIDLIVQHI 77 (298)
Q Consensus 3 ~kifvd~d~d~rl~Rri~RD~~er----gr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~-~~~~~i~~~i 77 (298)
+.||+++|.+....| +.++- .| +.+.+.+.+- .+.++|.|+ +.||++|+....+. ..++.|++.+
T Consensus 105 ~vv~L~~~~~~l~~R-l~~~~-~RPll~~~~~~~~~~l-~~~R~~~Y~-------~~Ad~~i~~~~~~~~~~~~~i~~~~ 174 (542)
T PRK14021 105 RVVYLDADPKEAMER-ANRGG-GRPMLNGDANKRWKKL-FKQRDPVFR-------QVANVHVHTRGLTPQAAAKKLIDMV 174 (542)
T ss_pred EEEEEECCHHHHHHH-HhCCC-CCCCCCCCcHHHHHHH-HHHHHHHHH-------hhCCEEEECCCCCHHHHHHHHHHHH
Confidence 579999999987766 55442 12 2223444444 445788875 45999998655443 3445555555
Q ss_pred h
Q 022342 78 H 78 (298)
Q Consensus 78 ~ 78 (298)
+
T Consensus 175 ~ 175 (542)
T PRK14021 175 A 175 (542)
T ss_pred H
Confidence 4
No 189
>PRK14530 adenylate kinase; Provisional
Probab=54.34 E-value=55 Score=28.65 Aligned_cols=22 Identities=14% Similarity=0.383 Sum_probs=17.9
Q ss_pred CCeEEEEeCCchhHHHhhhhcc
Q 022342 1 MNMKIFVDTDADVRLARRIRRD 22 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD 22 (298)
.|+.||+|+|.++.+.|-..|.
T Consensus 106 ~d~vI~Ld~~~~~l~~Rl~~R~ 127 (215)
T PRK14530 106 LDVVLYLDVSEEELVDRLTGRR 127 (215)
T ss_pred CCEEEEEeCCHHHHHHHHhCCC
Confidence 3788999999999987766663
No 190
>PLN02199 shikimate kinase
Probab=52.45 E-value=48 Score=31.47 Aligned_cols=50 Identities=22% Similarity=0.223 Sum_probs=29.5
Q ss_pred eEEEEeCCchhHHHhhhhcc-cccC----CCCH------HHHHHHHHhhhhhHHHhhcccccccceEEec
Q 022342 3 MKIFVDTDADVRLARRIRRD-TVER----GRDV------DSVLEQYAKFVKPAFDDFVLPSKKYADVIIP 61 (298)
Q Consensus 3 ~kifvd~d~d~rl~Rri~RD-~~er----gr~~------~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~ 61 (298)
+.||+++|.+. +.+|+.++ ...| +.+. .+-+.+....++|.|++ ||++|+
T Consensus 197 ~vV~Ldas~E~-l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~plY~~--------Ad~~V~ 257 (303)
T PLN02199 197 ISIWLDVPLEA-LAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTN--------ANARVS 257 (303)
T ss_pred eEEEEECCHHH-HHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHHHHHHh--------CCEEEe
Confidence 57999999885 55666652 1223 1111 12344444557777752 888887
No 191
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=52.34 E-value=50 Score=29.83 Aligned_cols=56 Identities=21% Similarity=0.288 Sum_probs=36.7
Q ss_pred eEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCch
Q 022342 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHV 68 (298)
Q Consensus 3 ~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~ 68 (298)
-.|-|.||.++.+.|-+.|| +-+.++.-+... ..-|--+ -++.||+||+|+++-..
T Consensus 128 ~tvvV~cd~~~Ql~Rl~~Rd----~lse~dAe~Rl~-sQmp~~~-----k~~~a~~Vi~Nng~~~~ 183 (225)
T KOG3220|consen 128 KTVVVTCDEELQLERLVERD----ELSEEDAENRLQ-SQMPLEK-----KCELADVVIDNNGSLED 183 (225)
T ss_pred eEEEEEECcHHHHHHHHHhc----cccHHHHHHHHH-hcCCHHH-----HHHhhheeecCCCChHH
Confidence 36789999999999999999 233333333322 2334322 34789999998666543
No 192
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=52.23 E-value=68 Score=29.57 Aligned_cols=76 Identities=22% Similarity=0.255 Sum_probs=46.9
Q ss_pred cCCccceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHH
Q 022342 180 KGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVC 259 (298)
Q Consensus 180 p~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~ 259 (298)
.+.++|.+|+--.+. .+...| ...+-+.||. .++.+.++.|++.|+ .++++-.-...+.-..+.
T Consensus 138 ~G~kIgviG~~~~~~-----~~~~~~----~~~~~~~d~~----~~~~~~v~~lr~~~~---D~II~l~H~G~~~d~~la 201 (281)
T cd07409 138 GGEKIGIIGYTTPDT-----TELSSP----GGKVKFLDEI----EAAQKEADKLKAQGV---NKIIALSHSGYEVDKEIA 201 (281)
T ss_pred CCEEEEEEEEecCcc-----cccccC----CCceEECCHH----HHHHHHHHHHHhcCC---CEEEEEeccCchhHHHHH
Confidence 356788888753221 111111 1345556664 567788999999887 455544444445556788
Q ss_pred HhCCCcEEEEEe
Q 022342 260 KRFPSLKIVTSE 271 (298)
Q Consensus 260 ~~~p~v~i~~a~ 271 (298)
+++|.+.++.+.
T Consensus 202 ~~~~giD~Iigg 213 (281)
T cd07409 202 RKVPGVDVIVGG 213 (281)
T ss_pred HcCCCCcEEEeC
Confidence 889999866655
No 193
>PHA03132 thymidine kinase; Provisional
Probab=50.37 E-value=12 Score=38.58 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=30.6
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCHHHHH-HHHHhhhhhHHHhhc
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVL-EQYAKFVKPAFDDFV 49 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~-~~~~~~~~p~~~~~i 49 (298)
|+.||+|++.++.+.|--. |||..|..+ ..|++.++-.|.+..
T Consensus 403 DLiIyLdv~pe~alkRIkk-----RgR~~E~~IdleYL~rLre~Y~~l~ 446 (580)
T PHA03132 403 DVIVLLKLNSEENLRRVKK-----RGRKEEKGINLTYLKELNWAYHAVY 446 (580)
T ss_pred CEEEEEeCCHHHHHHHHHh-----cCchhhhcCCHHHHHHHHHHHHHHH
Confidence 8999999999999988444 455555542 256666777776653
No 194
>PHA03136 thymidine kinase; Provisional
Probab=50.30 E-value=11 Score=36.84 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=33.8
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcc
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVL 50 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~ 50 (298)
|+.||++++.+..+.|= .+|||+.|.+=..|++.+.-.|+.|+.
T Consensus 193 D~IIyL~l~~e~~~~RI-----~kRgR~~E~I~~~YL~~L~~~Y~~~~n 236 (378)
T PHA03136 193 GNIVIMDLDECEHAERI-----IARGRPGEAIDVRFLCALHNIYICFMN 236 (378)
T ss_pred CEEEEEeCCHHHHHHHH-----HHcCCCccCCCHHHHHHHHHHHHHHHH
Confidence 67899999998877663 346777775445888888889988863
No 195
>PF11181 YflT: Heat induced stress protein YflT
Probab=50.00 E-value=26 Score=27.43 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=32.3
Q ss_pred cchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhC
Q 022342 221 ATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRF 262 (298)
Q Consensus 221 ATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~~ 262 (298)
.|...+..+|+.|+..|..+++|.+++= ..+-.+.|....
T Consensus 7 ~~~~E~~~~I~~L~~~Gy~~ddI~Vva~--d~~~~~~l~~~t 46 (103)
T PF11181_consen 7 DNEEEALSAIEELKAQGYSEDDIYVVAK--DKDRTERLADQT 46 (103)
T ss_pred CCHHHHHHHHHHHHHcCCCcccEEEEEc--CchHHHHHHHhc
Confidence 4788999999999999999899977763 566677777654
No 196
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=49.77 E-value=12 Score=32.20 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=16.3
Q ss_pred EEEEcCcccchHHHHHHHHHH
Q 022342 213 VLLLDPVLATGNSANQAIQLL 233 (298)
Q Consensus 213 Vil~Dp~lATG~t~~~ai~~L 233 (298)
=+|+||...||.|+.+|.+.=
T Consensus 193 diVlDpF~GSGTT~~aa~~l~ 213 (231)
T PF01555_consen 193 DIVLDPFAGSGTTAVAAEELG 213 (231)
T ss_dssp -EEEETT-TTTHHHHHHHHTT
T ss_pred eeeehhhhccChHHHHHHHcC
Confidence 367999999999999997643
No 197
>PLN02842 nucleotide kinase
Probab=48.87 E-value=63 Score=32.92 Aligned_cols=39 Identities=23% Similarity=0.360 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCcccchHHHHHHHHHHHHc-CCCCccEEEEEE
Q 022342 208 ISERHVLLLDPVLATGNSANQAIQLLIEK-GVPESHIIFLNL 248 (298)
Q Consensus 208 i~~~~Vil~Dp~lATG~t~~~ai~~L~~~-g~~~~~I~vv~~ 248 (298)
-++...|++-|.-+.|.+...-++.+.+. |- +-++++++
T Consensus 355 ~~d~~~i~v~P~~~v~~~~~~~~e~~~~~~~~--rpvillnp 394 (505)
T PLN02842 355 EEDDMFILVAPQNAVGNCIIDDLQAMTTAAGK--RPVILVNP 394 (505)
T ss_pred CCCcEEEEEcCCccccccchHHHHHHHHHhCC--CeEEEECC
Confidence 34578999999999999999888888763 43 23677664
No 198
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=48.78 E-value=78 Score=30.34 Aligned_cols=74 Identities=15% Similarity=0.257 Sum_probs=51.0
Q ss_pred HHHHHHHHhccCCccceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccc-hH---HHHHHHHHHHHcCCCCccEEE
Q 022342 170 SMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLAT-GN---SANQAIQLLIEKGVPESHIIF 245 (298)
Q Consensus 170 ~m~~~~~~~~p~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lAT-G~---t~~~ai~~L~~~g~~~~~I~v 245 (298)
.+.+.+-+.+ +.+.|.+-+.|=++. ..|.+++.++.|+.|+|+-.+... .. -+.-.++.|++.|+ ++|++
T Consensus 32 ~la~~ia~~l-g~~l~~~~~~~FpDG---E~~v~i~~~vrg~~V~ivqs~~~p~nd~l~eLll~~~alr~~ga--~ri~~ 105 (330)
T PRK02812 32 ALAQEVARYL-GMDLGPMIRKRFADG---ELYVQIQESIRGCDVYLIQPTCAPVNDHLMELLIMVDACRRASA--RQITA 105 (330)
T ss_pred HHHHHHHHHh-CCCceeeEEEECCCC---CEEEEeCCCCCCCEEEEECCCCCCccHHHHHHHHHHHHHHHhCC--ceEEE
Confidence 3444444443 566777666543222 467889999999999999885433 12 35667889999999 79999
Q ss_pred EEEE
Q 022342 246 LNLI 249 (298)
Q Consensus 246 v~~v 249 (298)
+.+.
T Consensus 106 ViPY 109 (330)
T PRK02812 106 VIPY 109 (330)
T ss_pred EEec
Confidence 8864
No 199
>PRK14532 adenylate kinase; Provisional
Probab=48.12 E-value=1e+02 Score=26.07 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=16.3
Q ss_pred CeEEEEeCCchhHHHhhhhc
Q 022342 2 NMKIFVDTDADVRLARRIRR 21 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~R 21 (298)
|+.||+++|.++.+.|-..|
T Consensus 108 d~vi~L~v~~~~~~~Rl~~R 127 (188)
T PRK14532 108 DVVIRLKVDDEALIERIVKR 127 (188)
T ss_pred CEEEEEECCHHHHHHHHHcC
Confidence 68999999999877666555
No 200
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=48.10 E-value=86 Score=23.36 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=35.1
Q ss_pred cEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEE-EeC-----H---HHHHHHHHhCCCcEEEEEe
Q 022342 211 RHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNL-ISA-----P---EGIHCVCKRFPSLKIVTSE 271 (298)
Q Consensus 211 ~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~-vas-----~---~gl~~l~~~~p~v~i~~a~ 271 (298)
...++.| .-.+-.++.++++.|++.... ++++++.- ..- . ..+.++...+.+. +++..
T Consensus 13 ~~~vi~D-~ahNp~s~~a~l~~l~~~~~~-~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~-vi~~~ 79 (91)
T PF02875_consen 13 GPTVIDD-YAHNPDSIRALLEALKELYPK-GRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADV-VILTG 79 (91)
T ss_dssp TEEEEEE-T--SHHHHHHHHHHHHHHCTT-SEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSE-EEEET
T ss_pred CcEEEEE-CCCCHHHHHHHHHHHHHhccC-CcEEEEEccccccccccHHHHHHHHHHHHhcCCE-EEEcC
Confidence 3455666 999999999999999987443 45554443 332 1 3555666666555 55443
No 201
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=47.45 E-value=61 Score=29.50 Aligned_cols=68 Identities=19% Similarity=0.191 Sum_probs=42.2
Q ss_pred cccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHH----------hCCCcEEEEEeecCCCCCCCceeCCCCc
Q 022342 219 VLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCK----------RFPSLKIVTSEIDVALNEEFRVIPGLGE 288 (298)
Q Consensus 219 ~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~----------~~p~v~i~~a~id~~l~~~~~ivPGlGD 288 (298)
.+.||.|+..+|+.|-+ -...+ .-+..|+++..-+.+.+ .+|.+.|+.-.-|+ .|.++..+-|-|-
T Consensus 25 GlGTGST~~~fI~~Lg~-~~~~e--~~i~~V~TS~~t~~l~~~~GI~v~~l~~~~~lDl~iDGADE-vd~~~~lIKGGGg 100 (227)
T COG0120 25 GLGTGSTAAYFIEALGR-RVKGE--LDIGGVPTSFQTEELARELGIPVSSLNEVDSLDLAIDGADE-VDPNLNLIKGGGG 100 (227)
T ss_pred EEcCcHHHHHHHHHHHH-hhccC--ccEEEEeCCHHHHHHHHHcCCeecCccccCccceEeecccc-cCCCCCEEccChH
Confidence 68999999999999976 33223 22333444444444443 24445666655444 4666889999886
Q ss_pred hh
Q 022342 289 FG 290 (298)
Q Consensus 289 ~G 290 (298)
|-
T Consensus 101 Al 102 (227)
T COG0120 101 AL 102 (227)
T ss_pred HH
Confidence 63
No 202
>PRK13948 shikimate kinase; Provisional
Probab=47.03 E-value=97 Score=26.88 Aligned_cols=67 Identities=10% Similarity=0.190 Sum_probs=35.4
Q ss_pred eEEEEeCCchhHHHhhhhcccc---cCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCc-hhHHHHHHHHh
Q 022342 3 MKIFVDTDADVRLARRIRRDTV---ERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNH-VAIDLIVQHIH 78 (298)
Q Consensus 3 ~kifvd~d~d~rl~Rri~RD~~---ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~-~~~~~i~~~i~ 78 (298)
..||+++|.++-..| +.++.. ..+...+.+.+.|. .++|-|. + ||++|+..+... ..++.|.+.++
T Consensus 105 ~vV~L~~~~e~l~~R-l~~~~RPll~~~~~~~~l~~l~~-~R~~~Y~-------~-a~~~i~t~~~~~~ei~~~i~~~l~ 174 (182)
T PRK13948 105 PVVVLWASPETIYER-TRPGDRPLLQVEDPLGRIRTLLN-EREPVYR-------Q-ATIHVSTDGRRSEEVVEEIVEKLW 174 (182)
T ss_pred eEEEEECCHHHHHHH-hcCCCCCCCCCCChHHHHHHHHH-HHHHHHH-------h-CCEEEECCCCCHHHHHHHHHHHHH
Confidence 579999998876654 543310 11122334444444 3666552 2 899998644332 23344444444
Q ss_pred h
Q 022342 79 T 79 (298)
Q Consensus 79 ~ 79 (298)
.
T Consensus 175 ~ 175 (182)
T PRK13948 175 A 175 (182)
T ss_pred H
Confidence 3
No 203
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=45.26 E-value=2.9e+02 Score=26.52 Aligned_cols=89 Identities=16% Similarity=0.119 Sum_probs=58.7
Q ss_pred ccceeEeeehH--HHHHHHHHhccCCccceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchH--HHHHHHHHHH
Q 022342 159 CKKLCGVSIVR--SMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGN--SANQAIQLLI 234 (298)
Q Consensus 159 ~~~i~~V~IlR--~m~~~~~~~~p~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lATG~--t~~~ai~~L~ 234 (298)
.++..+++--. .+.+.+-+.+-+.+.|.+-+.|=++ |+...+.+++.++.|+.|+++=++...=. -+.-.++.|+
T Consensus 14 ~~~~~i~~g~~~~~LA~~ia~~l~g~~l~~~~~~~FpD-GE~~v~v~~~~~vrg~~V~ivqs~~~pd~lmELLl~~dAlr 92 (326)
T PLN02297 14 KKQVHLFYCEETEELARKIAAESDAIELGSINWRKFPD-GFPNLFINNAHGIRGQHVAFLASFSSPAVIFEQLSVIYALP 92 (326)
T ss_pred CCCeEEEECCCCHHHHHHHHHHhCCCceeeeEEEECCC-CCEEEEEcCCCCcCCCeEEEECCCCCChHHHHHHHHHHHHH
Confidence 34556665433 4666666644467788877766444 33345666778899999999877543311 3455677889
Q ss_pred HcCCCCccEEEEEEEe
Q 022342 235 EKGVPESHIIFLNLIS 250 (298)
Q Consensus 235 ~~g~~~~~I~vv~~va 250 (298)
+.|+ ++|.++.+..
T Consensus 93 ~~ga--~~i~~ViPY~ 106 (326)
T PLN02297 93 KLFV--ASFTLVLPFF 106 (326)
T ss_pred HcCC--CEEEEEeeCC
Confidence 9999 7999998743
No 204
>PLN02469 hydroxyacylglutathione hydrolase
Probab=44.38 E-value=66 Score=29.49 Aligned_cols=54 Identities=22% Similarity=0.376 Sum_probs=36.6
Q ss_pred CcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEe------CHHHHHHHHHhCCCcEEEEEeec
Q 022342 210 ERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLIS------APEGIHCVCKRFPSLKIVTSEID 273 (298)
Q Consensus 210 ~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~va------s~~gl~~l~~~~p~v~i~~a~id 273 (298)
++.++++||.- ....++.|++.|.+ | -.++. =-.|+..+.+.+|++.||...-|
T Consensus 22 ~~~~vlIDp~~-----~~~il~~l~~~g~~---l--~~Il~TH~H~DH~gG~~~l~~~~~~~~V~~~~~~ 81 (258)
T PLN02469 22 TKDAAVVDPVD-----PEKVLQAAHEHGAK---I--KLVLTTHHHWDHAGGNEKIKKLVPGIKVYGGSLD 81 (258)
T ss_pred CCeEEEECCCC-----hHHHHHHHHHcCCc---c--cEEEecCCCCccccCHHHHHHHCCCCEEEEechh
Confidence 46899999972 34556667777753 2 22222 22678889999999999987644
No 205
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=44.18 E-value=71 Score=29.05 Aligned_cols=69 Identities=9% Similarity=0.088 Sum_probs=39.8
Q ss_pred cccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHH---------hCCCcEEEEEeecCCCCCCCceeCCCCch
Q 022342 219 VLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCK---------RFPSLKIVTSEIDVALNEEFRVIPGLGEF 289 (298)
Q Consensus 219 ~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~---------~~p~v~i~~a~id~~l~~~~~ivPGlGD~ 289 (298)
.|.||.|+..+|+.|.++... +...+.++-.|.+.-....+ .++.+.|+.-.-|+- +.+...+-|-|-+
T Consensus 26 GLGTGSTv~~~i~~L~~~~~~-~~l~i~~VptS~~t~~~a~~~Gipl~~l~~~~~iDiaiDGADev-d~~lnlIKGgGga 103 (228)
T PRK13978 26 GIGTGSTMELLLPQMAQLIKE-RGYNITGVCTSNKIAFLAKELGIKICEINDVDHIDLAIDGADEV-DPSLNIIKGGGGA 103 (228)
T ss_pred EeCchHHHHHHHHHHHHHhhc-cCccEEEEeCcHHHHHHHHHcCCcEechhhCCceeEEEecCcee-cCCccEEecCcHH
Confidence 789999999999999876532 33444443344443333322 223445555544443 4556677777743
No 206
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=43.57 E-value=16 Score=34.19 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.6
Q ss_pred CCeEEEEeCCchhHHHhhhhcccc
Q 022342 1 MNMKIFVDTDADVRLARRIRRDTV 24 (298)
Q Consensus 1 ~d~kifvd~d~d~rl~Rri~RD~~ 24 (298)
||++||||+|.+.--.|-+.|-..
T Consensus 211 fDfSIyvDa~~~~le~wyi~Rfl~ 234 (283)
T COG1072 211 FDFSIYVDADEELLEERYIERFLK 234 (283)
T ss_pred ceEEEEecCCHHHHHHHHHHHHHh
Confidence 799999999999999999998665
No 207
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=43.39 E-value=81 Score=30.11 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=52.6
Q ss_pred HHHHHHHhccCCccceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchH----HHHHHHHHHHHcCCCCccEEEE
Q 022342 171 MENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGN----SANQAIQLLIEKGVPESHIIFL 246 (298)
Q Consensus 171 m~~~~~~~~p~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lATG~----t~~~ai~~L~~~g~~~~~I~vv 246 (298)
+.+.+.+.+ +.+.|...+.|=.+ -..|.++++++.|+.|+|+.+.....+ -+.-.++.+++.|+ ++|.++
T Consensus 16 La~~ia~~l-~~~l~~~~~~rF~D---GE~~V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA~k~asA--~~It~V 89 (314)
T COG0462 16 LAEKIAKRL-GIPLGKVEVKRFPD---GEIYVRIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDALKRASA--KRITAV 89 (314)
T ss_pred HHHHHHHHh-CCCcccceeEEcCC---CcEEEEecccccCCeEEEEeCCCCCcCHHHHHHHHHHHHHHhcCC--ceEEEE
Confidence 444443322 56677766665322 145888999999999999999998666 45567788999999 799998
Q ss_pred EEE
Q 022342 247 NLI 249 (298)
Q Consensus 247 ~~v 249 (298)
.+-
T Consensus 90 iPY 92 (314)
T COG0462 90 IPY 92 (314)
T ss_pred eec
Confidence 863
No 208
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=43.38 E-value=1.2e+02 Score=28.60 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=42.3
Q ss_pred CCccceEEEEecCCCCceeEeccCCCCCCCcEEEEE-cCccc----chHHHHHHHHHHHHcCCCCccEEEEEEE
Q 022342 181 GIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLL-DPVLA----TGNSANQAIQLLIEKGVPESHIIFLNLI 249 (298)
Q Consensus 181 ~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~-Dp~lA----TG~t~~~ai~~L~~~g~~~~~I~vv~~v 249 (298)
+.+.|.+-..+=++ -..|.+++.++.|+.|+++ -.+.. .=--+...++.|++.|+ ++|+++.+-
T Consensus 21 g~~~~~~~~~~Fpd---GE~~v~i~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~~a~r~~ga--~~i~~v~PY 89 (308)
T TIGR01251 21 GLPLGDVEVKRFPD---GELYVRINESVRGKDVFIIQQSTSAPVNDNLMELLIMIDALKRASA--KSITAVIPY 89 (308)
T ss_pred CCeeeeeEEEECCC---CCEEEEECCCCCCCeEEEEeCCCCCCccHHHHHHHHHHHHHHHcCC--CeEEEEEEe
Confidence 44555544433211 1457888889999999998 54431 11256677889999999 789988863
No 209
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=43.02 E-value=82 Score=23.95 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEEEeCH---------HHHHHHHHhCCCcEEEEE
Q 022342 225 SANQAIQLLIEKGVPESHIIFLNLISAP---------EGIHCVCKRFPSLKIVTS 270 (298)
Q Consensus 225 t~~~ai~~L~~~g~~~~~I~vv~~vas~---------~gl~~l~~~~p~v~i~~a 270 (298)
++..+++.|.+.|+ ++|+++-++.++ +.++++.+.||++++.++
T Consensus 45 ~~~~~l~~l~~~g~--~~v~vvPlfl~~G~h~~~dip~~~~~~~~~~~~~~i~~~ 97 (101)
T cd03416 45 SLAEALDELAAQGA--TRIVVVPLFLLAGGHVKEDIPAALAAARARHPGVRIRYA 97 (101)
T ss_pred CHHHHHHHHHHcCC--CEEEEEeeEeCCCccccccHHHHHHHHHHHCCCeEEEec
Confidence 45558899999998 678877754432 456667777898887664
No 210
>PRK00279 adk adenylate kinase; Reviewed
Probab=42.34 E-value=46 Score=29.19 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=17.7
Q ss_pred CeEEEEeCCchhHHHhhhhcc
Q 022342 2 NMKIFVDTDADVRLARRIRRD 22 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD 22 (298)
|..||++++.++.+.|-..|-
T Consensus 108 ~~vi~l~~~~~~~~~Rl~~R~ 128 (215)
T PRK00279 108 DAVIEIDVPDEELVERLSGRR 128 (215)
T ss_pred CEEEEEECCHHHHHHHHhCCc
Confidence 678999999999888877773
No 211
>PRK00889 adenylylsulfate kinase; Provisional
Probab=41.68 E-value=6.4 Score=33.31 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=11.9
Q ss_pred EEEEeCCchhHHHhh
Q 022342 4 KIFVDTDADVRLARR 18 (298)
Q Consensus 4 kifvd~d~d~rl~Rr 18 (298)
-||+++|.++...|.
T Consensus 103 ~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 103 EVFVDAPLEVCEQRD 117 (175)
T ss_pred EEEEcCCHHHHHHhC
Confidence 589999998777763
No 212
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=41.49 E-value=1.3e+02 Score=28.32 Aligned_cols=64 Identities=13% Similarity=0.130 Sum_probs=44.2
Q ss_pred CCccceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccc--hH--HHHHHHHHHHHcCCCCccEEEEEEE
Q 022342 181 GIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLAT--GN--SANQAIQLLIEKGVPESHIIFLNLI 249 (298)
Q Consensus 181 ~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lAT--G~--t~~~ai~~L~~~g~~~~~I~vv~~v 249 (298)
+.+.|.+-+.+=++. ..|.++++++.|+.|+++-.+... -. -+...++.+++.|+ ++|.++.+-
T Consensus 10 ~~~l~~~~~~~F~DG---E~~vri~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~a--~~i~~ViPY 77 (304)
T PRK03092 10 GVEVTPTTAYDFANG---EIYVRFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRASA--KRITVVLPF 77 (304)
T ss_pred CCceeeeEEEECCCC---CEEEEECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcCC--CeEEEEEec
Confidence 445555555432221 467888889999999998775542 22 35678889999999 799988863
No 213
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=41.19 E-value=1.2e+02 Score=28.29 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=44.3
Q ss_pred CCccceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchH---HHHHHHHHHHHcCCCCccEEEEEE
Q 022342 181 GIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGN---SANQAIQLLIEKGVPESHIIFLNL 248 (298)
Q Consensus 181 ~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lATG~---t~~~ai~~L~~~g~~~~~I~vv~~ 248 (298)
+.+.|.+-..|=++. ..|.+++.++.|+.|+++-..-.-.. .+...++.|++.|+ ++|.++.+
T Consensus 20 ~~~~~~~~~~~FpdG---E~~v~i~~~v~g~~v~i~~~~~~~~d~l~ell~~~~alr~~ga--~~i~~v~P 85 (285)
T PRK00934 20 NTELALVETKRFPDG---ELYVRILGEIDGEDVVIISTTYPQDENLVELLLLIDALRDEGA--KSITLVIP 85 (285)
T ss_pred CCceEeeEEEECCCC---CEEEEECCCcCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCC--CeEEEEec
Confidence 666777666654332 45778888999999988876432122 35667888999999 78998885
No 214
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=40.95 E-value=1.2e+02 Score=30.32 Aligned_cols=83 Identities=12% Similarity=0.109 Sum_probs=56.7
Q ss_pred ceeEeeehH--HHHHHHHHhccCCccceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccc--h--HHHHHHHHHHH
Q 022342 161 KLCGVSIVR--SMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLAT--G--NSANQAIQLLI 234 (298)
Q Consensus 161 ~i~~V~IlR--~m~~~~~~~~p~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lAT--G--~t~~~ai~~L~ 234 (298)
+.++++--- .+.+.+-+.+ +++.|.+.+.|=++. ..|.+++.++.|+.|+|+-++... - --+...++.|+
T Consensus 119 ~m~I~sgs~~~~LA~~IA~~L-g~~l~~~~~~rFpDG---E~~Vri~e~VrG~dV~IVqS~~~pvNd~LmELLllidAlr 194 (439)
T PTZ00145 119 NAILFSGSSNPLLSKNIADHL-GTILGRVHLKRFADG---EVSMQFLESIRGKDVYIIQPTCPPVNENLIELLLMISTCR 194 (439)
T ss_pred CeEEEECCCCHHHHHHHHHHh-CCCceeeEEEECCCC---CEEEEECCCcCCCeEEEEecCCCCCcHHHHHHHHHHHHHH
Confidence 456665332 4555555544 677887777654332 457788889999999998864322 1 24567888999
Q ss_pred HcCCCCccEEEEEEE
Q 022342 235 EKGVPESHIIFLNLI 249 (298)
Q Consensus 235 ~~g~~~~~I~vv~~v 249 (298)
+.|+ ++|++|.+.
T Consensus 195 ~agA--krItlViPY 207 (439)
T PTZ00145 195 RASA--KKITAVIPY 207 (439)
T ss_pred Hhcc--CeEEEEeec
Confidence 9999 799999863
No 215
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=40.52 E-value=29 Score=29.16 Aligned_cols=73 Identities=23% Similarity=0.395 Sum_probs=53.7
Q ss_pred cEEEEEcCcccchH------------------HHHHHHHHHHHcCCCCccEEEEE-EEeCHHHHHHHHHhCCCcEEEEEe
Q 022342 211 RHVLLLDPVLATGN------------------SANQAIQLLIEKGVPESHIIFLN-LISAPEGIHCVCKRFPSLKIVTSE 271 (298)
Q Consensus 211 ~~Vil~Dp~lATG~------------------t~~~ai~~L~~~g~~~~~I~vv~-~vas~~gl~~l~~~~p~v~i~~a~ 271 (298)
..++=+||++.||- +....|+.+.++|.| +++++ +-=.|+.++++.+.| +..+|+..
T Consensus 32 ~lIVGiDPG~ttgiAildL~G~~l~l~S~R~~~~~evi~~I~~~G~P---viVAtDV~p~P~~V~Kia~~f-~A~ly~P~ 107 (138)
T PF04312_consen 32 YLIVGIDPGTTTGIAILDLDGELLDLKSSRNMSRSEVIEWISEYGKP---VIVATDVSPPPETVKKIARSF-NAVLYTPE 107 (138)
T ss_pred CEEEEECCCceeEEEEEecCCcEEEEEeecCCCHHHHHHHHHHcCCE---EEEEecCCCCcHHHHHHHHHh-CCcccCCC
Confidence 34555788888764 456789999999975 77777 444789999999999 67888876
Q ss_pred ecCCCCCCCceeCCCC
Q 022342 272 IDVALNEEFRVIPGLG 287 (298)
Q Consensus 272 id~~l~~~~~ivPGlG 287 (298)
-|=..+++..+.-+.|
T Consensus 108 ~dlsveeK~~l~~~~~ 123 (138)
T PF04312_consen 108 RDLSVEEKQELAREYS 123 (138)
T ss_pred CcCCHHHHHHHHHhhC
Confidence 6555556666655444
No 216
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=39.35 E-value=33 Score=29.44 Aligned_cols=59 Identities=14% Similarity=0.358 Sum_probs=35.4
Q ss_pred eEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhccccc----ccceEEecCC
Q 022342 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSK----KYADVIIPRG 63 (298)
Q Consensus 3 ~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~----~~ADiii~~~ 63 (298)
++|||.+|.+.|+.|=.+|.-. .-.+.+..+.+-.+ .|-.|.+++.-.. ..-|++|+.+
T Consensus 116 l~V~i~A~~~~Rv~ri~~~~~~-s~~~A~~~i~~~D~-~R~~~~~~~~~~~~~d~~~YDLvint~ 178 (179)
T PF13189_consen 116 LHVFIYAPLEFRVERIMEREGI-SEEEAEKLIKKEDK-RRRAYYKYYTGIDWGDPSNYDLVINTS 178 (179)
T ss_dssp EEEEEEE-HHHHHHHHHHHHT---HHHHHHHHHHHHH-HHHHHHHHH-SS-TTBGGG-SEEEEES
T ss_pred EEEEEECCHHHHHHHHHHHcCC-CHHHHHHHHHHHHH-HHHHHHHHHhCCCCCCchhceEEEeCc
Confidence 8999999999999997777422 23455566666454 4555555554332 3467887754
No 217
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=39.27 E-value=1.4e+02 Score=28.51 Aligned_cols=72 Identities=15% Similarity=0.281 Sum_probs=47.0
Q ss_pred HHHHHHHhccCCccceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchH----HHHHHHHHHHHcCCCCccEEEE
Q 022342 171 MENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGN----SANQAIQLLIEKGVPESHIIFL 246 (298)
Q Consensus 171 m~~~~~~~~p~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lATG~----t~~~ai~~L~~~g~~~~~I~vv 246 (298)
+.+.+-+.+ +.+.|.+.+.|=++. ..|.+++.++.|+.|+++=..-...+ -+.-.++.|++.|+ ++|.++
T Consensus 18 La~~ia~~l-g~~l~~~~~~~FpdG---E~~v~i~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~alr~~~a--~~i~~V 91 (319)
T PRK04923 18 LAQSICKEL-GVRMGKALVTRFSDG---EVQVEIEESVRRQEVFVIQPTCAPSAENLMELLVLIDALKRASA--ASVTAV 91 (319)
T ss_pred HHHHHHHHh-CCceeeeEEEECCCC---CEEEEECCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcCC--cEEEEE
Confidence 444444433 566676666543221 35788888999999988854322222 45567788899999 789988
Q ss_pred EE
Q 022342 247 NL 248 (298)
Q Consensus 247 ~~ 248 (298)
.+
T Consensus 92 iP 93 (319)
T PRK04923 92 IP 93 (319)
T ss_pred ee
Confidence 86
No 218
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=38.64 E-value=38 Score=31.69 Aligned_cols=68 Identities=19% Similarity=0.348 Sum_probs=41.1
Q ss_pred EEEEeCCchhHHHhhhhcccccCCCCHHH---HHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHHhhh
Q 022342 4 KIFVDTDADVRLARRIRRDTVERGRDVDS---VLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTK 80 (298)
Q Consensus 4 kifvd~d~d~rl~Rri~RD~~ergr~~~~---v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~ 80 (298)
-+|+|++.++-+.|--. . .|..++.. +++. --...++..|.|..||+||+...-+ ...+.+.|+..
T Consensus 86 iLFLeA~~~~Lv~RY~e--t-RR~HPL~~~~~l~~~-----I~~ERelL~pLk~~A~~vIDTs~ls---~~~Lr~~i~~~ 154 (286)
T COG1660 86 VLFLEADDETLVRRYSE--T-RRSHPLSEDGLLLEA-----IAKERELLAPLREIADLVIDTSELS---VHELRERIRTR 154 (286)
T ss_pred EEEEECchhHHHHHHhh--h-hhcCCCCccCcHHHH-----HHHHHHHHHHHHHHhhhEeecccCC---HHHHHHHHHHH
Confidence 37999998876665421 1 12333222 2222 2246788999999999999985544 44555555555
Q ss_pred cc
Q 022342 81 LG 82 (298)
Q Consensus 81 l~ 82 (298)
+.
T Consensus 155 f~ 156 (286)
T COG1660 155 FL 156 (286)
T ss_pred Hc
Confidence 55
No 219
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=38.23 E-value=1.1e+02 Score=27.72 Aligned_cols=54 Identities=22% Similarity=0.357 Sum_probs=42.6
Q ss_pred EEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCCcEEEE
Q 022342 212 HVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVT 269 (298)
Q Consensus 212 ~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~~p~v~i~~ 269 (298)
.+.++++.- +......+++.+.+.|+ ++++..-..-.+.+.++.++||+++.+.
T Consensus 33 ~~~~~e~~~-~~~~~~~~i~~~~~~g~---dlIi~~g~~~~~~~~~vA~~~p~~~F~~ 86 (258)
T cd06353 33 EVTYVENVP-EGADAERVLRELAAQGY---DLIFGTSFGFMDAALKVAKEYPDVKFEH 86 (258)
T ss_pred eEEEEecCC-chHhHHHHHHHHHHcCC---CEEEECchhhhHHHHHHHHHCCCCEEEE
Confidence 355566654 45788899999999997 6777777778889999999999887555
No 220
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=37.83 E-value=1.4e+02 Score=26.98 Aligned_cols=51 Identities=16% Similarity=0.365 Sum_probs=35.4
Q ss_pred cEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCH------HHHHHHHHhCCCcEEEEEe
Q 022342 211 RHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAP------EGIHCVCKRFPSLKIVTSE 271 (298)
Q Consensus 211 ~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~------~gl~~l~~~~p~v~i~~a~ 271 (298)
..++++||.-+ ...++.|++.|.... .++.+- .|+..+.+++|++.||...
T Consensus 22 ~~~ilIDpg~~-----~~vl~~l~~~g~~l~-----~IllTH~H~DHigG~~~l~~~~~~~~V~~~~ 78 (251)
T PRK10241 22 GRCLIVDPGEA-----EPVLNAIAENNWQPE-----AIFLTHHHHDHVGGVKELVEKFPQIVVYGPQ 78 (251)
T ss_pred CcEEEECCCCh-----HHHHHHHHHcCCccC-----EEEeCCCCchhhccHHHHHHHCCCCEEEecc
Confidence 56888998732 345677777776432 234432 5889999999999998754
No 221
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=37.76 E-value=72 Score=29.91 Aligned_cols=40 Identities=33% Similarity=0.519 Sum_probs=32.4
Q ss_pred cCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEE
Q 022342 203 KLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNL 248 (298)
Q Consensus 203 klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~ 248 (298)
..|.+.+++.|+|+ ..||+..+++-.|++.|+ ++|++++=
T Consensus 119 ~~~~~~~~~~vlil----GAGGAarAv~~aL~~~g~--~~i~V~NR 158 (283)
T COG0169 119 GLPVDVTGKRVLIL----GAGGAARAVAFALAEAGA--KRITVVNR 158 (283)
T ss_pred CCCcccCCCEEEEE----CCcHHHHHHHHHHHHcCC--CEEEEEeC
Confidence 34456678888875 579999999999999999 67888773
No 222
>PLN02757 sirohydrochlorine ferrochelatase
Probab=37.68 E-value=67 Score=27.20 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEEEeC---------HHHHHHHHHhCCCcEEEEE
Q 022342 225 SANQAIQLLIEKGVPESHIIFLNLISA---------PEGIHCVCKRFPSLKIVTS 270 (298)
Q Consensus 225 t~~~ai~~L~~~g~~~~~I~vv~~vas---------~~gl~~l~~~~p~v~i~~a 270 (298)
++..+++.|.+.|+ ++|+++=++.+ |+-++++.+.||+++|+.+
T Consensus 59 sl~eal~~l~~~g~--~~vvVvP~FL~~G~H~~~DIp~~v~~~~~~~p~~~i~~~ 111 (154)
T PLN02757 59 SIKDAFGRCVEQGA--SRVIVSPFFLSPGRHWQEDIPALTAEAAKEHPGVKYLVT 111 (154)
T ss_pred CHHHHHHHHHHCCC--CEEEEEEhhhcCCcchHhHHHHHHHHHHHHCCCcEEEEC
Confidence 45667777777777 56666554332 2355666777888877654
No 223
>PLN02384 ribose-5-phosphate isomerase
Probab=37.64 E-value=92 Score=29.01 Aligned_cols=68 Identities=15% Similarity=0.251 Sum_probs=40.2
Q ss_pred cccchHHHHHHHHHHHHcCCCCccEE-EEEEEeCHHHHHHHHH---------hCCCcEEEEEeecCCCCCCCceeCCCCc
Q 022342 219 VLATGNSANQAIQLLIEKGVPESHII-FLNLISAPEGIHCVCK---------RFPSLKIVTSEIDVALNEEFRVIPGLGE 288 (298)
Q Consensus 219 ~lATG~t~~~ai~~L~~~g~~~~~I~-vv~~vas~~gl~~l~~---------~~p~v~i~~a~id~~l~~~~~ivPGlGD 288 (298)
.|.||.|+..+|+.|.++... +.+. +.++-.|.+.-....+ .++.+.|+.-..|+- +.+...+-|-|-
T Consensus 54 GLGTGSTv~~~I~~La~r~~~-~~l~~I~~VpTS~~T~~~a~~~GIpl~~l~~v~~iDiaiDGADEI-d~~lnlIKGGGg 131 (264)
T PLN02384 54 GLGTGSTAKHAVDRIGELLRQ-GKLKNIIGIPTSKKTHEQAVSLGIPLSDLDSHPVVDLAIDGADEV-DPNLNLVKGRGG 131 (264)
T ss_pred EecchHHHHHHHHHHHHhhhh-ccccceEEEcCcHHHHHHHHHcCCcEeccccCCcccEEEECCcee-CCCCCEEEeCcH
Confidence 789999999999999876543 3344 3344444443333322 234455555544433 445667777773
No 224
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=36.75 E-value=1.7e+02 Score=27.83 Aligned_cols=65 Identities=18% Similarity=0.204 Sum_probs=44.4
Q ss_pred CCccceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccc----hHHHHHHHHHHHHcCCCCccEEEEEEEe
Q 022342 181 GIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLAT----GNSANQAIQLLIEKGVPESHIIFLNLIS 250 (298)
Q Consensus 181 ~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lAT----G~t~~~ai~~L~~~g~~~~~I~vv~~va 250 (298)
+.+.|.+-+.|=++. ..|.+++.++.|+.|+++-.+-.. =-.+.-.++.|++.|+ ++|+++.+..
T Consensus 26 g~~l~~~~~~~FpdG---E~~v~i~~~vrg~dV~iv~s~~~~~nd~lmelll~~~alr~~~a--~~i~~V~PYl 94 (320)
T PRK02269 26 GIELGKSSVRQFSDG---EIQVNIEESIRGHHVFILQSTSSPVNDNLMEILIMVDALKRASA--ESINVVMPYY 94 (320)
T ss_pred CCceeeeEEEECCCC---CEEEEECCCCCCCEEEEEecCCCCccchHHHHHHHHHHHHHhCC--CeEEEEEecc
Confidence 455665555432221 357888889999999998664321 1246678889999999 7999888643
No 225
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=36.59 E-value=2.3e+02 Score=27.36 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=17.8
Q ss_pred eEEEEeCCchhHHHhhhhcc
Q 022342 3 MKIFVDTDADVRLARRIRRD 22 (298)
Q Consensus 3 ~kifvd~d~d~rl~Rri~RD 22 (298)
+.||+++|.++++.|.-.|+
T Consensus 157 ~~V~ld~ple~~l~RN~~R~ 176 (340)
T TIGR03575 157 CQLFLDCPVESCLLRNKQRP 176 (340)
T ss_pred EEEEEeCCHHHHHHHHhcCC
Confidence 46999999999999988885
No 226
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=36.26 E-value=67 Score=29.75 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=34.5
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhC
Q 022342 207 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRF 262 (298)
Q Consensus 207 ~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~~ 262 (298)
++++++|+|+ .+||+..+++..|.+.|+ ++|.+++= +.+-.+++.+.+
T Consensus 122 ~~~~k~vlvl----GaGGaarai~~aL~~~G~--~~i~I~nR--t~~ka~~La~~~ 169 (282)
T TIGR01809 122 PLAGFRGLVI----GAGGTSRAAVYALASLGV--TDITVINR--NPDKLSRLVDLG 169 (282)
T ss_pred ccCCceEEEE----cCcHHHHHHHHHHHHcCC--CeEEEEeC--CHHHHHHHHHHh
Confidence 4678888765 689999999999999999 67877762 233344454433
No 227
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=35.92 E-value=29 Score=29.56 Aligned_cols=42 Identities=19% Similarity=0.206 Sum_probs=28.4
Q ss_pred hhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCC
Q 022342 18 RIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGD 65 (298)
Q Consensus 18 ri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~ 65 (298)
|++|-...+|.+.+++.+.+...... ++.+..||+||.|.++
T Consensus 135 ri~Rl~~Rd~~s~~~~~~r~~~Q~~~------~~~~~~aD~vI~N~~~ 176 (179)
T cd02022 135 QIERLMKRDGLSEEEAEARIASQMPL------EEKRARADFVIDNSGS 176 (179)
T ss_pred HHHHHHHcCCCCHHHHHHHHHhcCCH------HHHHHhCCEEEECcCC
Confidence 44554433488999998887774332 2467899999998553
No 228
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=35.75 E-value=2e+02 Score=22.19 Aligned_cols=59 Identities=15% Similarity=0.250 Sum_probs=36.7
Q ss_pred CcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCH------HHHHHHHHhCCCcEEEEEeecCC
Q 022342 210 ERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAP------EGIHCVCKRFPSLKIVTSEIDVA 275 (298)
Q Consensus 210 ~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~------~gl~~l~~~~p~v~i~~a~id~~ 275 (298)
|..|.++|..... ...++.+++..+ +++.++...+. +=++.+++..|++.++.+.....
T Consensus 28 G~~v~~~d~~~~~----~~l~~~~~~~~p---d~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t 92 (121)
T PF02310_consen 28 GHEVDILDANVPP----EELVEALRAERP---DVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHAT 92 (121)
T ss_dssp TBEEEEEESSB-H----HHHHHHHHHTTC---SEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSSG
T ss_pred CCeEEEECCCCCH----HHHHHHHhcCCC---cEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCchh
Confidence 6678888877643 455666777766 57777762222 23344555688888888875543
No 229
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=35.74 E-value=85 Score=26.42 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.3
Q ss_pred CeEEEEeCCchhHHHhhhhcccc
Q 022342 2 NMKIFVDTDADVRLARRIRRDTV 24 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ 24 (298)
++.||+++|.++++.|-..|...
T Consensus 106 ~~~i~l~~~~~~~~~Rl~~R~~~ 128 (194)
T cd01428 106 DKVIELDVPDEVLIERILGRRIC 128 (194)
T ss_pred CEEEEEECCHHHHHHHHHcCCcC
Confidence 67899999999999999888754
No 230
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=35.54 E-value=1.8e+02 Score=27.40 Aligned_cols=64 Identities=22% Similarity=0.299 Sum_probs=44.5
Q ss_pred CCccceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchH---HHHHHHHHHHHcCCCCccEEEEEEE
Q 022342 181 GIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGN---SANQAIQLLIEKGVPESHIIFLNLI 249 (298)
Q Consensus 181 ~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lATG~---t~~~ai~~L~~~g~~~~~I~vv~~v 249 (298)
+.+.|.+-..|=++ -..|.++++++.|+.|+|+-.+..--. .+...++.|++.|+ ++|.++.+.
T Consensus 23 g~~~~~~~~~~F~d---GE~~v~i~~~v~g~~V~ivqs~~~~n~~l~elll~~~alr~~~a--~~i~~ViPY 89 (301)
T PRK07199 23 GVEVGRIELHRFPD---GESYVRLDSPVAGRTVVLVCSLDRPDEKLLPLLFAAEAARELGA--RRVGLVAPY 89 (301)
T ss_pred CCceeeeEEEECCC---CCEEEEECCCCCCCEEEEECCCCCCcHHHHHHHHHHHHHHHcCC--CeEEEEeec
Confidence 55566655554322 145777888999999999988654212 45667788899999 789988863
No 231
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=35.34 E-value=83 Score=23.67 Aligned_cols=54 Identities=22% Similarity=0.358 Sum_probs=38.0
Q ss_pred EEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhC----CCcEEEEEee
Q 022342 215 LLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRF----PSLKIVTSEI 272 (298)
Q Consensus 215 l~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~~----p~v~i~~a~i 272 (298)
|+|..+.||....+..+.+ +.|+ +..+.++=.+++.++...+.+ ++++.+++.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~~~---~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~ 58 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DAGP---SSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADA 58 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCT
T ss_pred CEEeecCCcHHHHHHHHHh-hhcc---cceEEEEECCHHHHHHHHHhchhcCCceEEEECCH
Confidence 5889999999988888887 5563 366777777888898888877 6888887765
No 232
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=35.30 E-value=27 Score=30.12 Aligned_cols=44 Identities=14% Similarity=0.164 Sum_probs=23.8
Q ss_pred EEEEcCcccchHHHHHHHHHHHHcCC--CCccEEEEEEEeCHHHHH
Q 022342 213 VLLLDPVLATGNSANQAIQLLIEKGV--PESHIIFLNLISAPEGIH 256 (298)
Q Consensus 213 Vil~Dp~lATG~t~~~ai~~L~~~g~--~~~~I~vv~~vas~~gl~ 256 (298)
-.|+|||+.||.-++.|.......-+ ..+...+++.=..++.++
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~ 75 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVR 75 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHH
T ss_pred CEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHH
Confidence 37999999999999888655543221 001233555544555554
No 233
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=34.54 E-value=1.9e+02 Score=27.72 Aligned_cols=73 Identities=15% Similarity=0.245 Sum_probs=49.5
Q ss_pred HHHHHHHhccCCccceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccc-hH---HHHHHHHHHHHcCCCCccEEEE
Q 022342 171 MENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLAT-GN---SANQAIQLLIEKGVPESHIIFL 246 (298)
Q Consensus 171 m~~~~~~~~p~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lAT-G~---t~~~ai~~L~~~g~~~~~I~vv 246 (298)
+.+.+-+.+ +++.|.+-+.|=++. ..|.+++.++.|+.|+|+=++... .. -+...++.|++.|+ ++|.++
T Consensus 21 La~~ia~~l-g~~l~~~~~~~FpdG---E~~v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~alr~~~a--~~i~~V 94 (332)
T PRK00553 21 LVDSICRKL-SMKPGEIVIQKFADG---ETYIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDALKRGSA--KSITAI 94 (332)
T ss_pred HHHHHHHHh-CCceeeeEEEECCCC---CEEEEECCCCCCCEEEEEcCCCCCCchHHHHHHHHHHHHHHcCC--CeEEEE
Confidence 444444433 667777666653322 457888889999999998775432 11 35668888999999 789988
Q ss_pred EEE
Q 022342 247 NLI 249 (298)
Q Consensus 247 ~~v 249 (298)
.+.
T Consensus 95 iPY 97 (332)
T PRK00553 95 LPY 97 (332)
T ss_pred eec
Confidence 863
No 234
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=34.15 E-value=3.3e+02 Score=25.93 Aligned_cols=83 Identities=8% Similarity=0.115 Sum_probs=53.4
Q ss_pred ceeEeeehH--HHHHHHHHhccCCccceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccc-h---HHHHHHHHHHH
Q 022342 161 KLCGVSIVR--SMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLAT-G---NSANQAIQLLI 234 (298)
Q Consensus 161 ~i~~V~IlR--~m~~~~~~~~p~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lAT-G---~t~~~ai~~L~ 234 (298)
+.++++--. .+.+.+-+.+ +++.|.+...+=++. ..|.+++.++.|+.|+++-.+-.. - --+...++.|+
T Consensus 9 ~~~i~~~~~~~~la~~ia~~l-g~~l~~~~~~~FpdG---E~~v~i~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~alr 84 (323)
T PRK02458 9 QIKLFSLNSNLEIAEKIAQAA-GVPLGKLSSRQFSDG---EIMINIEESVRGDDIYIIQSTSFPVNDHLWELLIMIDACK 84 (323)
T ss_pred CeEEEECCCCHHHHHHHHHHh-CCceeeeEEEECCCC---CEEEEecCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHH
Confidence 444454322 3444444433 667777766543221 468889999999999998765322 1 23556778889
Q ss_pred HcCCCCccEEEEEEE
Q 022342 235 EKGVPESHIIFLNLI 249 (298)
Q Consensus 235 ~~g~~~~~I~vv~~v 249 (298)
+.|+ ++|.++.+.
T Consensus 85 ~~~a--~~i~lViPY 97 (323)
T PRK02458 85 RASA--NTVNVVLPY 97 (323)
T ss_pred HcCC--ceEEEEEec
Confidence 9999 789998863
No 235
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=33.35 E-value=2.1e+02 Score=26.94 Aligned_cols=64 Identities=25% Similarity=0.325 Sum_probs=43.2
Q ss_pred CCccceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccc--hH--HHHHHHHHHHHcCCCCccEEEEEEE
Q 022342 181 GIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLAT--GN--SANQAIQLLIEKGVPESHIIFLNLI 249 (298)
Q Consensus 181 ~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lAT--G~--t~~~ai~~L~~~g~~~~~I~vv~~v 249 (298)
+.+.|.+-+.|=++ -..|.+++.++.|+.|+|+-++... -. -+...++.|++.|+ ++|.++.+.
T Consensus 12 g~~l~~~~~~~Fpd---GE~~v~i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~a--~~i~~ViPY 79 (302)
T PLN02369 12 GLELGKITIKRFAD---GEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASA--KRITAVIPY 79 (302)
T ss_pred CCceeeeEEEECCC---CCEEEEECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcCC--CeEEEEeec
Confidence 44555555443211 1346678889999999999886532 12 35667888999999 789888863
No 236
>COG4974 XerD Site-specific recombinase XerD [DNA replication, recombination, and repair]
Probab=32.42 E-value=77 Score=30.02 Aligned_cols=74 Identities=11% Similarity=0.147 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHHhhhccccccccCCCceeeccchHHHHHHh
Q 022342 27 GRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPNVYVIQSTFQIRGMH 106 (298)
Q Consensus 27 gr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~l~~~~l~~~~~~l~vl~~~~~l~~ll 106 (298)
|....+++.+|+...||....--.+ -|.++++.......-+.+-..|+...+.-++. ..-+-|++.|+. +.|+|
T Consensus 184 g~~A~~~l~~Yl~~~R~~l~~~~~~----~~~LF~n~~g~~ltrq~~w~~lk~~a~~Agi~-~~isPH~LRHsF-ATHLL 257 (300)
T COG4974 184 GEEAVEALEKYLEEARPKLLKGKSS----TDALFPNQRGGGLTRQGFWKRLKDYAERAGID-KKISPHTLRHSF-ATHLL 257 (300)
T ss_pred hHHHHHHHHHHHHHhhHHHhccCCC----CCeeeecCCCCCCCHHHHHHHHHHHHHHhCCC-CCcCchhhHHHH-HHHHH
Confidence 6778889999999899976543211 58999987766655555555566555555555 334567888874 66665
No 237
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=32.39 E-value=1.1e+02 Score=25.09 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=15.1
Q ss_pred EEEEeCCchhHHHhhhhcc
Q 022342 4 KIFVDTDADVRLARRIRRD 22 (298)
Q Consensus 4 kifvd~d~d~rl~Rri~RD 22 (298)
-||+++|.++++.|--.|.
T Consensus 97 ~i~l~~~~e~~~~R~~~R~ 115 (163)
T TIGR01313 97 FIYLSGDKDVILERMKARK 115 (163)
T ss_pred EEEEeCCHHHHHHHHHhcc
Confidence 3899999998877766663
No 238
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=32.32 E-value=1.9e+02 Score=27.27 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=42.0
Q ss_pred CCccceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchH----HHHHHHHHHHHcCCCCccEEEEEEE
Q 022342 181 GIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGN----SANQAIQLLIEKGVPESHIIFLNLI 249 (298)
Q Consensus 181 ~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lATG~----t~~~ai~~L~~~g~~~~~I~vv~~v 249 (298)
+.+.|.+-..+=++ -..|.+++.++.|+.|+++=..-...+ -+...++.+++.|+ ++|.++.+.
T Consensus 21 g~~~~~~~~~~Fpd---GE~~vri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~ga--~~i~lViPY 88 (309)
T PRK01259 21 GIPLGKASVGRFSD---GEISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRASA--GRITAVIPY 88 (309)
T ss_pred CCceeeeEEEECCC---CCEEEEeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHHHHHHcCC--ceEEEEeec
Confidence 44555544443221 135778888999999998855322212 35668889999999 789988863
No 239
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=32.07 E-value=1.3e+02 Score=28.40 Aligned_cols=45 Identities=13% Similarity=0.293 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCCcEEEEEe
Q 022342 225 SANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSE 271 (298)
Q Consensus 225 t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~~p~v~i~~a~ 271 (298)
++.+.++.|++.|+ .-|++++=....+.=..|.++.|++.++.+.
T Consensus 195 ~~~~~v~~Lr~~gv--D~II~LsH~g~~~~d~~lA~~v~gIDvIigG 239 (313)
T cd08162 195 QIQPSIDALTAQGI--NKIILLSHLQQISIEQALAALLSGVDVIIAG 239 (313)
T ss_pred HHHHHHHHHHHCCC--CEEEEEecccccchHHHHHhcCCCCCEEEeC
Confidence 57788999999888 3344444332222335688889999866654
No 240
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=31.93 E-value=54 Score=33.78 Aligned_cols=67 Identities=15% Similarity=0.263 Sum_probs=33.9
Q ss_pred eEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCc-hhHHHHHHHHh
Q 022342 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNH-VAIDLIVQHIH 78 (298)
Q Consensus 3 ~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~-~~~~~i~~~i~ 78 (298)
+.||+++|.+++..| +.|......+ . +.+.+....+.| |..| +.||++|+....+. ..++.|++.++
T Consensus 494 ivV~L~~p~e~l~~R-~rr~Ll~~~~-~-~~i~~l~~~R~~----yy~p--~~Adl~IDt~~~s~~eiv~~Il~~L~ 561 (568)
T PRK05537 494 IEVHVATPLEVCEQR-DRKGLYAKAR-E-GKIKGFTGISDP----YEPP--ANPELVIDTTNVTPDECAHKILLYLE 561 (568)
T ss_pred EEEEEcCCHHHHHHh-ccccccccch-h-chhhcccccccc----ccCC--CCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 368999999977655 4444332222 2 223332222333 2223 46899999754322 23344444443
No 241
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=31.87 E-value=1.4e+02 Score=25.03 Aligned_cols=59 Identities=14% Similarity=0.026 Sum_probs=31.3
Q ss_pred EEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCc-hhHHHHHHH
Q 022342 4 KIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNH-VAIDLIVQH 76 (298)
Q Consensus 4 kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~-~~~~~i~~~ 76 (298)
-||+++|.+++..|...| |.....+... .++.+-.| ...|++|+...... ..++.|+++
T Consensus 114 ~v~l~~~~~~l~~R~~~R-----~~~~~~~~~~-------~~~~~~~~--~~~dl~iDts~~s~~e~a~~i~~~ 173 (175)
T cd00227 114 WVGVRCPGEVAEGRETAR-----GDRVPGQARK-------QARVVHAG--VEYDLEVDTTHKTPIECARAIAAR 173 (175)
T ss_pred EEEEECCHHHHHHHHHhc-----CCccchHHHH-------HHHHhcCC--CcceEEEECCCCCHHHHHHHHHHh
Confidence 478999998877777765 3222222221 12222222 33489999855443 233444443
No 242
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=31.60 E-value=51 Score=33.05 Aligned_cols=51 Identities=12% Similarity=0.318 Sum_probs=38.5
Q ss_pred CCeEEEEeCCc-hhHHHhhhhcccccC-----CCCHHHHHHHHHhhhhhHHHhhcccc
Q 022342 1 MNMKIFVDTDA-DVRLARRIRRDTVER-----GRDVDSVLEQYAKFVKPAFDDFVLPS 52 (298)
Q Consensus 1 ~d~kifvd~d~-d~rl~Rri~RD~~er-----gr~~~~v~~~~~~~~~p~~~~~i~P~ 52 (298)
+|.-|+++++. +.-+.||++.+...| |.+-++|.+ |-++-.|+|+.|..-.
T Consensus 376 ~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeqV~~-FV~~YmPaY~~y~~~L 432 (460)
T PLN03046 376 IDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEEVMD-FVSRYLPAYKAYLPTL 432 (460)
T ss_pred hceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHHHHH-HHHHhhhHHHHHHHHH
Confidence 35667778776 899999999887654 677777655 6777899999996433
No 243
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=31.46 E-value=63 Score=28.93 Aligned_cols=16 Identities=31% Similarity=0.816 Sum_probs=13.2
Q ss_pred CCCCceeCCCCchhhh
Q 022342 277 NEEFRVIPGLGEFGDR 292 (298)
Q Consensus 277 ~~~~~ivPGlGD~GdR 292 (298)
.+++-|+||.|.|+|=
T Consensus 39 ~AD~liLPGVGaf~~a 54 (204)
T COG0118 39 KADKLILPGVGAFGAA 54 (204)
T ss_pred hCCEEEecCCCCHHHH
Confidence 4667899999999874
No 244
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=30.77 E-value=1.7e+02 Score=25.04 Aligned_cols=51 Identities=10% Similarity=0.221 Sum_probs=33.2
Q ss_pred CcEEEEEcCcccch-HHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCC
Q 022342 210 ERHVLLLDPVLATG-NSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFP 263 (298)
Q Consensus 210 ~~~Vil~Dp~lATG-~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~~p 263 (298)
.+.+||++++-..+ +.+..+.+.+++.|+ +|.++++=...+-++++.++-.
T Consensus 108 ~~iiil~sd~~~~~~~~~~~~~~~l~~~~I---~v~~IgiG~~~~~L~~ia~~tg 159 (183)
T cd01453 108 REVLIIFSSLSTCDPGNIYETIDKLKKENI---RVSVIGLSAEMHICKEICKATN 159 (183)
T ss_pred eEEEEEEcCCCcCChhhHHHHHHHHHHcCc---EEEEEEechHHHHHHHHHHHhC
Confidence 34677777654332 345678888999887 5777776444455777776643
No 245
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=30.43 E-value=99 Score=30.78 Aligned_cols=56 Identities=21% Similarity=0.466 Sum_probs=25.9
Q ss_pred EEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEE-----EeCHHHHHHHHHhCCCcEEEEEee
Q 022342 214 LLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNL-----ISAPEGIHCVCKRFPSLKIVTSEI 272 (298)
Q Consensus 214 il~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~-----vas~~gl~~l~~~~p~v~i~~a~i 272 (298)
++++.-+.++.....-++.|.+.|+ +++.+.. ....+.++.+.+.||++.|+++.+
T Consensus 213 l~V~aav~~~~~~~~r~~~L~~aG~---d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v 273 (450)
T TIGR01302 213 LIVGAAVGTREFDKERAEALVKAGV---DVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNV 273 (450)
T ss_pred EEEEEEecCchhHHHHHHHHHHhCC---CEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeC
Confidence 4555555554443344445555555 2333322 122334555555556555555444
No 246
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=30.43 E-value=1.8e+02 Score=26.93 Aligned_cols=36 Identities=17% Similarity=0.346 Sum_probs=27.4
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEE
Q 022342 207 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNL 248 (298)
Q Consensus 207 ~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~ 248 (298)
+++++.|+|+ .+||...++...|.+.|+ ++|.+++-
T Consensus 123 ~~~~k~vlI~----GAGGagrAia~~La~~G~--~~V~I~~R 158 (289)
T PRK12548 123 DVKGKKLTVI----GAGGAATAIQVQCALDGA--KEITIFNI 158 (289)
T ss_pred CcCCCEEEEE----CCcHHHHHHHHHHHHCCC--CEEEEEeC
Confidence 3567888765 458888888889999998 56777653
No 247
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=29.95 E-value=2e+02 Score=26.37 Aligned_cols=64 Identities=28% Similarity=0.420 Sum_probs=43.0
Q ss_pred eEEEEeCCchhHHHhhhhcccccCCCCH-HHHHHHHHhhhhhHHHhhccccccc----ceEEecCCCCCchhHHHHHHHH
Q 022342 3 MKIFVDTDADVRLARRIRRDTVERGRDV-DSVLEQYAKFVKPAFDDFVLPSKKY----ADVIIPRGGDNHVAIDLIVQHI 77 (298)
Q Consensus 3 ~kifvd~d~d~rl~Rri~RD~~ergr~~-~~v~~~~~~~~~p~~~~~i~P~~~~----ADiii~~~~~~~~~~~~i~~~i 77 (298)
+-||+-|+.|+++-|. .|||... ++|++| .|.+|-+|-..+ +=++|......+.-+|.+-..+
T Consensus 104 ciIyl~~plDtc~rrN-----~ergepip~Evl~q-------ly~RfEePn~~~rWDspll~id~~d~~t~~IDfiesvl 171 (261)
T COG4088 104 CIIYLRTPLDTCLRRN-----RERGEPIPEEVLRQ-------LYDRFEEPNPDRRWDSPLLVIDDSDVSTEVIDFIESVL 171 (261)
T ss_pred EEEEEccCHHHHHHhh-----ccCCCCCCHHHHHH-------HHHhhcCCCCCccccCceEEEecccccccchhHHHHHH
Confidence 4689999999998776 4677765 455555 678888887764 5577775333344555554433
Q ss_pred h
Q 022342 78 H 78 (298)
Q Consensus 78 ~ 78 (298)
+
T Consensus 172 ~ 172 (261)
T COG4088 172 R 172 (261)
T ss_pred H
Confidence 3
No 248
>PRK03839 putative kinase; Provisional
Probab=29.87 E-value=3.3e+02 Score=22.72 Aligned_cols=20 Identities=15% Similarity=0.198 Sum_probs=15.8
Q ss_pred CeEEEEeCCchhHHHhhhhc
Q 022342 2 NMKIFVDTDADVRLARRIRR 21 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~R 21 (298)
|+.||++++.++.+.|-..|
T Consensus 81 ~~vi~L~~~~~~~~~Rl~~R 100 (180)
T PRK03839 81 DYVIVLRAHPKIIKERLKER 100 (180)
T ss_pred CEEEEEECCHHHHHHHHHHc
Confidence 67899999999987665444
No 249
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=29.76 E-value=1.8e+02 Score=27.85 Aligned_cols=45 Identities=9% Similarity=0.249 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCCCCccEEEEEEEeC---------------HHHHHHHHHhCCCcEEEEE
Q 022342 224 NSANQAIQLLIEKGVPESHIIFLNLISA---------------PEGIHCVCKRFPSLKIVTS 270 (298)
Q Consensus 224 ~t~~~ai~~L~~~g~~~~~I~vv~~vas---------------~~gl~~l~~~~p~v~i~~a 270 (298)
..+.+.++.+.+.|+ ..|.+..+... +.+++.+.++||++-|+|-
T Consensus 61 d~l~~~~~~~~~~Gi--~~v~lFgv~~~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vi~D 120 (322)
T PRK13384 61 SALADEIERLYALGI--RYVMPFGISHHKDAKGSDTWDDNGLLARMVRTIKAAVPEMMVIPD 120 (322)
T ss_pred HHHHHHHHHHHHcCC--CEEEEeCCCCCCCCCcccccCCCChHHHHHHHHHHHCCCeEEEee
Confidence 568889999999999 56776665332 5789999999999888774
No 250
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=29.50 E-value=77 Score=23.37 Aligned_cols=31 Identities=32% Similarity=0.390 Sum_probs=24.4
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEE
Q 022342 209 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHII 244 (298)
Q Consensus 209 ~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~ 244 (298)
+++.++++.. +|.+...+...|++.|. .++.
T Consensus 55 ~~~~ivv~c~---~g~~s~~a~~~l~~~G~--~~v~ 85 (96)
T cd01444 55 RDRPVVVYCY---HGNSSAQLAQALREAGF--TDVR 85 (96)
T ss_pred CCCCEEEEeC---CCChHHHHHHHHHHcCC--ceEE
Confidence 4567777766 88889999999999998 4554
No 251
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=29.16 E-value=1.1e+02 Score=22.74 Aligned_cols=33 Identities=21% Similarity=0.115 Sum_probs=24.0
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEE
Q 022342 209 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL 246 (298)
Q Consensus 209 ~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv 246 (298)
+++.|++++ .+|.....+...|++.|. +++.++
T Consensus 55 ~~~~ivv~c---~~g~~s~~~~~~l~~~G~--~~v~~l 87 (96)
T cd01529 55 RATRYVLTC---DGSLLARFAAQELLALGG--KPVALL 87 (96)
T ss_pred CCCCEEEEe---CChHHHHHHHHHHHHcCC--CCEEEe
Confidence 456777776 477888888889999998 466443
No 252
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=28.99 E-value=1.1e+02 Score=21.72 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=24.4
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEE
Q 022342 209 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL 246 (298)
Q Consensus 209 ~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv 246 (298)
.++.|++++.- |.....+...|++.|. .++.++
T Consensus 49 ~~~~vv~~c~~---~~~a~~~~~~l~~~G~--~~v~~l 81 (89)
T cd00158 49 KDKPIVVYCRS---GNRSARAAKLLRKAGG--TNVYNL 81 (89)
T ss_pred CCCeEEEEeCC---CchHHHHHHHHHHhCc--ccEEEe
Confidence 45677777765 7788889999999987 455543
No 253
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=28.98 E-value=2.3e+02 Score=28.47 Aligned_cols=63 Identities=21% Similarity=0.308 Sum_probs=50.2
Q ss_pred cEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE---EEeCHHHHHHHHHhCC----CcEEEEEeecCC
Q 022342 211 RHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN---LISAPEGIHCVCKRFP----SLKIVTSEIDVA 275 (298)
Q Consensus 211 ~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~---~vas~~gl~~l~~~~p----~v~i~~a~id~~ 275 (298)
-..++=+-.+.||..+.+|...|.+-.- ..+.+++ ++.+.+.++.|.+.++ .+.|.|+..+..
T Consensus 69 v~~v~Q~eqlGTgHAV~~a~~~l~~~~~--g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP 138 (460)
T COG1207 69 VEFVLQEEQLGTGHAVLQALPALADDYD--GDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDP 138 (460)
T ss_pred ceEEEecccCChHHHHHhhhhhhhcCCC--CcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCC
Confidence 4577778899999999999999954221 3577777 8999999999998886 478888887764
No 254
>PRK11524 putative methyltransferase; Provisional
Probab=28.91 E-value=40 Score=31.20 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=26.8
Q ss_pred EEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHh
Q 022342 212 HVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKR 261 (298)
Q Consensus 212 ~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~ 261 (298)
.=+|+||-..+|.|+.+|.+.=++ ++++=..++-.+...++
T Consensus 209 GD~VLDPF~GSGTT~~AA~~lgR~---------~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 209 GDIVLDPFAGSFTTGAVAKASGRK---------FIGIEINSEYIKMGLRR 249 (284)
T ss_pred CCEEEECCCCCcHHHHHHHHcCCC---------EEEEeCCHHHHHHHHHH
Confidence 345899999999999999776322 34444455555544443
No 255
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=28.61 E-value=1.1e+02 Score=26.71 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=17.6
Q ss_pred CeEEEEeCCchhHHHhhhhc
Q 022342 2 NMKIFVDTDADVRLARRIRR 21 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~R 21 (298)
|+.||+++|.++.+.|-..|
T Consensus 105 ~~vi~L~~~~~~~~~Rl~~R 124 (210)
T TIGR01351 105 DAVIELDVPDEELVERLSGR 124 (210)
T ss_pred CEEEEEECCHHHHHHHHHCC
Confidence 67899999999988887777
No 256
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=27.99 E-value=1.2e+02 Score=25.97 Aligned_cols=43 Identities=23% Similarity=0.413 Sum_probs=29.9
Q ss_pred eccCCCCCCCcEEEEE--cCcccch-------------HHHHHHHHHHHHcCCCCccEEEEE
Q 022342 201 YEKLPNDISERHVLLL--DPVLATG-------------NSANQAIQLLIEKGVPESHIIFLN 247 (298)
Q Consensus 201 y~klP~~i~~~~Vil~--Dp~lATG-------------~t~~~ai~~L~~~g~~~~~I~vv~ 247 (298)
|..+ |++||.|+++ ||.-+++ ++...=.+.+.++|+ .-++++.
T Consensus 43 y~g~--DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA--~gvi~v~ 100 (157)
T cd04821 43 YKGL--DVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGA--AGALIVH 100 (157)
T ss_pred ccCC--CcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCC--eEEEEEe
Confidence 4444 7999999999 8876653 234456788889999 3455553
No 257
>PRK13699 putative methylase; Provisional
Probab=27.98 E-value=43 Score=30.09 Aligned_cols=19 Identities=32% Similarity=0.609 Sum_probs=17.2
Q ss_pred EEEcCcccchHHHHHHHHH
Q 022342 214 LLLDPVLATGNSANQAIQL 232 (298)
Q Consensus 214 il~Dp~lATG~t~~~ai~~ 232 (298)
+++||...+|.|+.+|.+.
T Consensus 166 ~vlDpf~Gsgtt~~aa~~~ 184 (227)
T PRK13699 166 IVLDPFAGSGSTCVAALQS 184 (227)
T ss_pred EEEeCCCCCCHHHHHHHHc
Confidence 7999999999999999864
No 258
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=27.81 E-value=65 Score=29.83 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=19.3
Q ss_pred EEEcCcccchHHHHHHHHHHHHc
Q 022342 214 LLLDPVLATGNSANQAIQLLIEK 236 (298)
Q Consensus 214 il~Dp~lATG~t~~~ai~~L~~~ 236 (298)
-|+||.+.||+-+.++.+.+++.
T Consensus 49 ~VlDPacGsG~fL~~~~~~i~~~ 71 (311)
T PF02384_consen 49 SVLDPACGSGGFLVAAMEYIKEK 71 (311)
T ss_dssp EEEETT-TTSHHHHHHHHHHHTC
T ss_pred eeechhhhHHHHHHHHHHhhccc
Confidence 46999999999999999998654
No 259
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=27.56 E-value=85 Score=25.41 Aligned_cols=34 Identities=18% Similarity=0.089 Sum_probs=22.6
Q ss_pred eEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHH
Q 022342 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYA 38 (298)
Q Consensus 3 ~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~ 38 (298)
.-||+++|.++...|-..|+-. .++.+.+..++.
T Consensus 100 ~~v~l~~~~~~~~~R~~~R~~~--~~~~~~~~~~~~ 133 (150)
T cd02021 100 RFVHLDGPREVLAERLAARKGH--FMPADLLDSQFE 133 (150)
T ss_pred EEEEEECCHHHHHHHHHhcccC--CCCHHHHHHHHH
Confidence 3689999999988888888543 333444444443
No 260
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=27.10 E-value=1.4e+02 Score=27.41 Aligned_cols=49 Identities=29% Similarity=0.468 Sum_probs=34.6
Q ss_pred CCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhC
Q 022342 206 NDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRF 262 (298)
Q Consensus 206 ~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~~ 262 (298)
.++.+++|+|+ .+|+...+++..|.+.|+ .+|.+++- +.+-.+.+.+.+
T Consensus 119 ~~~~~k~vlVl----GaGg~a~ai~~aL~~~g~--~~V~v~~R--~~~~a~~l~~~~ 167 (278)
T PRK00258 119 VDLKGKRILIL----GAGGAARAVILPLLDLGV--AEITIVNR--TVERAEELAKLF 167 (278)
T ss_pred CCCCCCEEEEE----cCcHHHHHHHHHHHHcCC--CEEEEEeC--CHHHHHHHHHHh
Confidence 35778888776 579999999999999997 46776653 334444554443
No 261
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=26.53 E-value=2.2e+02 Score=27.25 Aligned_cols=50 Identities=16% Similarity=0.333 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHcCCCCccEEEEEEEeC-----------------HHHHHHHHHhCCCcEEEEE-eecC
Q 022342 223 GNSANQAIQLLIEKGVPESHIIFLNLISA-----------------PEGIHCVCKRFPSLKIVTS-EIDV 274 (298)
Q Consensus 223 G~t~~~ai~~L~~~g~~~~~I~vv~~vas-----------------~~gl~~l~~~~p~v~i~~a-~id~ 274 (298)
=..+.+.++.+.+.|+ +.+.+..++.. +.+++.+.++||++.|+|- ++++
T Consensus 53 ~d~l~~~v~~~~~~Gi--~~v~lFgv~~~~~KD~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DVclc~ 120 (320)
T cd04823 53 IDELLKEAEEAVDLGI--PAVALFPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVALDP 120 (320)
T ss_pred HHHHHHHHHHHHHcCC--CEEEEecCCCcccCCcccccccCCCChHHHHHHHHHHhCCCcEEEEeeeccC
Confidence 3678889999999999 57887777531 5789999999999888774 3444
No 262
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=26.37 E-value=2e+02 Score=25.34 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=33.1
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHH
Q 022342 207 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCK 260 (298)
Q Consensus 207 ~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~ 260 (298)
+++|+.|+|+ ..|......++.|.+.|+ +|++++.=.+ +.++.+.+
T Consensus 6 ~l~gk~vlVv----GgG~va~rk~~~Ll~~ga---~VtVvsp~~~-~~l~~l~~ 51 (205)
T TIGR01470 6 NLEGRAVLVV----GGGDVALRKARLLLKAGA---QLRVIAEELE-SELTLLAE 51 (205)
T ss_pred EcCCCeEEEE----CcCHHHHHHHHHHHHCCC---EEEEEcCCCC-HHHHHHHH
Confidence 4678888875 467788888999999997 6777776444 44555544
No 263
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=26.00 E-value=2.8e+02 Score=28.35 Aligned_cols=134 Identities=17% Similarity=0.188 Sum_probs=70.5
Q ss_pred hHhhh-cCCC-ChhhHHHHHHHHHHHHHHHHhCCCCCeeEEEeCCCCcceeeeeeccceeEeeehHHHHHHHHHhccCCc
Q 022342 106 HTLIR-DRGI-SKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSMENALRACCKGIK 183 (298)
Q Consensus 106 lt~LR-d~~T-~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~v~tp~g~~~~g~~~~~~i~~V~IlR~m~~~~~~~~p~a~ 183 (298)
|..|- |..| .-.+|-+-.+.|..++-+ ..+|+-..-|....+....+ .-.+..++- ..+.+
T Consensus 78 ~N~~g~Da~~lGNHEFd~G~~~l~~~~~~---~~fp~l~aNv~~~~~~~~~~--~~~p~~i~~------------~~g~k 140 (550)
T TIGR01530 78 MNAAGFDFFTLGNHEFDAGNEGLKEFLEP---LEIPVLSANVIPDAASILHG--KWKPSAIFE------------RAGEK 140 (550)
T ss_pred HhccCCCEEEeccccccCCHHHHHHHHHh---CCCCEEEEeeecCCCccccc--CcCceEEEE------------ECCeE
Confidence 33333 4443 455777777776665532 34666444443221111000 012333332 24568
Q ss_pred cceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCC
Q 022342 184 IGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFP 263 (298)
Q Consensus 184 ~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~~p 263 (298)
+|.||+--.+.+. ....| +..+-+.||. .++.+.++.|+++|+ +++++-.-...+.-..+.++.|
T Consensus 141 IgiiGl~~~~~~~----~~~~~----~~~~~f~d~~----~~~~~~v~~Lk~~g~---D~II~lsH~g~~~d~~la~~~~ 205 (550)
T TIGR01530 141 IAIIGLDTVKKTV----ESSSP----GKDIKFIDEI----AAAQIAANALKQQGI---NKIILLSHAGFEKNCEIAQKIN 205 (550)
T ss_pred EEEEEeecCcccc----cccCC----CCceEECCHH----HHHHHHHHHHHhCCC---CEEEEEecCCcHHHHHHHhcCC
Confidence 8999985221111 01111 2345566764 457788899999898 3444444444444467888899
Q ss_pred CcEEEEEe
Q 022342 264 SLKIVTSE 271 (298)
Q Consensus 264 ~v~i~~a~ 271 (298)
+|.++.+.
T Consensus 206 ~iD~IigG 213 (550)
T TIGR01530 206 DIDVIVSG 213 (550)
T ss_pred CCCEEEeC
Confidence 99766554
No 264
>PHA01735 hypothetical protein
Probab=25.85 E-value=1.1e+02 Score=22.70 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=29.0
Q ss_pred cccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCCc
Q 022342 219 VLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSL 265 (298)
Q Consensus 219 ~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~~p~v 265 (298)
.=||-..+.+|++.|++.++. - +.....-+.++....|++
T Consensus 28 geATtaDL~AA~d~Lk~NdIt-----g--v~~~gspl~~La~~~P~l 67 (76)
T PHA01735 28 GEATTADLRAACDWLKSNDIT-----G--VAVDGSPLAKLAGLMPQL 67 (76)
T ss_pred CcccHHHHHHHHHHHHHCCCc-----e--eeCCCCHHHHHHhcCccC
Confidence 558889999999999997753 2 233344477888877754
No 265
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=25.72 E-value=1.2e+02 Score=28.42 Aligned_cols=85 Identities=16% Similarity=0.271 Sum_probs=52.4
Q ss_pred eccceeEeeehHHHHHHHHHhccCCccceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcC
Q 022342 158 FCKKLCGVSIVRSMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKG 237 (298)
Q Consensus 158 ~~~~i~~V~IlR~m~~~~~~~~p~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g 237 (298)
++..+.|.+++| .+++.+|+..+=+++=. ..--|-.|-+..+. .-..++++.|++++
T Consensus 11 FDSGVGGLsVlr----ei~~~LP~e~~iY~~D~-----a~~PYG~ks~e~I~--------------~~~~~i~~~l~~~~ 67 (269)
T COG0796 11 FDSGVGGLSVLR----EIRRQLPDEDIIYVGDT-----ARFPYGEKSEEEIR--------------ERTLEIVDFLLERG 67 (269)
T ss_pred EECCCCcHHHHH----HHHHHCCCCcEEEEecC-----CCCCCCCCCHHHHH--------------HHHHHHHHHHHHcC
Confidence 566788888766 33456788775433311 10111122221121 23356778888999
Q ss_pred CCCccEEEEEEEeCHHHHHHHHHhCCCcEEE
Q 022342 238 VPESHIIFLNLISAPEGIHCVCKRFPSLKIV 268 (298)
Q Consensus 238 ~~~~~I~vv~~vas~~gl~~l~~~~p~v~i~ 268 (298)
+ +-++++|==||.-+++.|+++| ++.|+
T Consensus 68 i--k~lVIACNTASa~al~~LR~~~-~iPVv 95 (269)
T COG0796 68 I--KALVIACNTASAVALEDLREKF-DIPVV 95 (269)
T ss_pred C--CEEEEecchHHHHHHHHHHHhC-CCCEE
Confidence 7 6788888889999999999999 44443
No 266
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=25.27 E-value=2.5e+02 Score=26.84 Aligned_cols=49 Identities=16% Similarity=0.309 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCCCCccEEEEEEEeC---------------HHHHHHHHHhCCCcEEEEE-eecC
Q 022342 224 NSANQAIQLLIEKGVPESHIIFLNLISA---------------PEGIHCVCKRFPSLKIVTS-EIDV 274 (298)
Q Consensus 224 ~t~~~ai~~L~~~g~~~~~I~vv~~vas---------------~~gl~~l~~~~p~v~i~~a-~id~ 274 (298)
..+.+.++.+.+.|+ +.|.+..+-.. +.+++.+.++||++-|+|- ++|+
T Consensus 51 d~l~~~~~~~~~~Gi--~~v~LFgv~~~Kd~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DvcLc~ 115 (314)
T cd00384 51 DSLVEEAEELADLGI--RAVILFGIPEHKDEIGSEAYDPDGIVQRAIRAIKEAVPELVVITDVCLCE 115 (314)
T ss_pred HHHHHHHHHHHHCCC--CEEEEECCCCCCCCCcccccCCCChHHHHHHHHHHhCCCcEEEEeeeccC
Confidence 678889999999999 56777665321 5789999999999888774 3444
No 267
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=25.16 E-value=2.7e+02 Score=23.35 Aligned_cols=51 Identities=16% Similarity=0.323 Sum_probs=30.1
Q ss_pred CCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCCcEEEE
Q 022342 208 ISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVT 269 (298)
Q Consensus 208 i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~~p~v~i~~ 269 (298)
+++..+|++| +|.|.....+.|.++. ++.+++ ..-.+-......|+++|++
T Consensus 17 I~~~~~Ifld----~GtT~~~la~~L~~~~----~ltVvT---nsl~ia~~l~~~~~~~vi~ 67 (161)
T PF00455_consen 17 IEDGDTIFLD----SGTTTLELAKYLPDKK----NLTVVT---NSLPIANELSENPNIEVIL 67 (161)
T ss_pred CCCCCEEEEE----CchHHHHHHHHhhcCC----ceEEEE---CCHHHHHHHHhcCceEEEE
Confidence 4566778877 5888888888887753 344433 2222223334456665554
No 268
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=24.97 E-value=2.6e+02 Score=26.78 Aligned_cols=45 Identities=22% Similarity=0.425 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcCCCCccEEEEEEEeC------------------HHHHHHHHHhCCCcEEEEE
Q 022342 224 NSANQAIQLLIEKGVPESHIIFLNLISA------------------PEGIHCVCKRFPSLKIVTS 270 (298)
Q Consensus 224 ~t~~~ai~~L~~~g~~~~~I~vv~~vas------------------~~gl~~l~~~~p~v~i~~a 270 (298)
..+...++.+.+.|+ +.|.+..+... +.+++.+.++||++-|+|-
T Consensus 51 d~l~~~~~~~~~~Gi--~~v~LFgv~~~~~Kd~~~gs~a~~~~g~v~~air~iK~~~pdl~vi~D 113 (320)
T cd04824 51 NRLEEFLRPLVAKGL--RSVILFGVPLKPGKDDRSGSAADDEDGPVIQAIKLIREEFPELLIACD 113 (320)
T ss_pred HHHHHHHHHHHHCCC--CEEEEeCCCccccCCcCccccccCCCChHHHHHHHHHHhCCCcEEEEe
Confidence 467888999999999 57877776421 5789999999999888774
No 269
>PF02873 MurB_C: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; InterPro: IPR011601 This entry represents a C-terminal conserved region of UDP-N-acetylenolpyruvoylglucosamine reductase 1.1.1.158 from EC, which is also called UDP-N-acetylmuramate dehydrogenase. It is a part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide, which is a precursor of bacterial peptidoglycan. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 1MBB_A 2Q85_A 2MBR_A 1UXY_A 1MBT_A 1HSK_A 2GQU_A 2GQT_A 3I99_A 3TX1_A.
Probab=24.87 E-value=55 Score=26.00 Aligned_cols=33 Identities=18% Similarity=0.440 Sum_probs=22.7
Q ss_pred ccccceEEecCCCCCchhHHHHHHHHhhhcccc
Q 022342 52 SKKYADVIIPRGGDNHVAIDLIVQHIHTKLGQH 84 (298)
Q Consensus 52 ~~~~ADiii~~~~~~~~~~~~i~~~i~~~l~~~ 84 (298)
+.+||.+||+.++-....+-.++.++++...++
T Consensus 60 S~kHanfivN~g~Ata~dv~~Li~~v~~~V~~~ 92 (105)
T PF02873_consen 60 SEKHANFIVNHGGATAADVLALIEEVRERVKEK 92 (105)
T ss_dssp -SSSTTEEEE-SS--HHHHHHHHHHHHHHHHHH
T ss_pred chhhCCeEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 457999999988777777777788888776654
No 270
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=24.60 E-value=1.2e+02 Score=25.53 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=31.8
Q ss_pred cccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHh
Q 022342 219 VLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKR 261 (298)
Q Consensus 219 ~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~ 261 (298)
...+...+..|-+.|+..|+ +.| +..-..+.+|+++|.+.
T Consensus 101 l~~~~~~i~~a~~~L~~aG~--~~i-f~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 101 LPSDDANIERAKKWLKNAGV--KEI-FEVSAVTGEGIEELKDY 140 (143)
T ss_pred CccchhhHHHHHHHHHHcCC--CCe-EEEECCCCcCHHHHHHH
Confidence 44467899999999999999 567 55556688999998753
No 271
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=24.55 E-value=2.7e+02 Score=26.68 Aligned_cols=45 Identities=18% Similarity=0.368 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHcCCCCccEEEEEEEeC---------------HHHHHHHHHhCCCcEEEEE
Q 022342 224 NSANQAIQLLIEKGVPESHIIFLNLISA---------------PEGIHCVCKRFPSLKIVTS 270 (298)
Q Consensus 224 ~t~~~ai~~L~~~g~~~~~I~vv~~vas---------------~~gl~~l~~~~p~v~i~~a 270 (298)
..+.+.++.+.+.|+ +.|.+..+-.. +.+++.+.++||++-|+|-
T Consensus 59 d~l~~~v~~~~~~Gi--~av~LFgv~~~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~vi~D 118 (323)
T PRK09283 59 DLLVKEAEEAVELGI--PAVALFGVPELKDEDGSEAYNPDGLVQRAIRAIKKAFPELGVITD 118 (323)
T ss_pred HHHHHHHHHHHHCCC--CEEEEeCcCCCCCcccccccCCCCHHHHHHHHHHHhCCCcEEEEe
Confidence 467889999999999 56776665222 5789999999999888774
No 272
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=24.55 E-value=86 Score=24.22 Aligned_cols=36 Identities=25% Similarity=0.480 Sum_probs=26.9
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEE
Q 022342 207 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLI 249 (298)
Q Consensus 207 ~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~v 249 (298)
+++|+.|+|+ ..|.....-++.|.+.|+ +|++++.-
T Consensus 4 ~l~~~~vlVv----GgG~va~~k~~~Ll~~gA---~v~vis~~ 39 (103)
T PF13241_consen 4 DLKGKRVLVV----GGGPVAARKARLLLEAGA---KVTVISPE 39 (103)
T ss_dssp --TT-EEEEE----EESHHHHHHHHHHCCCTB---EEEEEESS
T ss_pred EcCCCEEEEE----CCCHHHHHHHHHHHhCCC---EEEEECCc
Confidence 5788888874 578999999999999997 67777753
No 273
>PLN02962 hydroxyacylglutathione hydrolase
Probab=24.45 E-value=3.6e+02 Score=24.58 Aligned_cols=56 Identities=23% Similarity=0.440 Sum_probs=36.9
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeC------HHHHHHHHHhCCCcEEEEEee
Q 022342 209 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISA------PEGIHCVCKRFPSLKIVTSEI 272 (298)
Q Consensus 209 ~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas------~~gl~~l~~~~p~v~i~~a~i 272 (298)
.++.++|+||.-.... ..++.|++.|.. | ..++.+ -.|...+.+++|++.++....
T Consensus 34 ~~~~avlIDP~~~~~~---~~l~~l~~~g~~---i--~~Il~TH~H~DHigg~~~l~~~~~~a~v~~~~~ 95 (251)
T PLN02962 34 PDKPALLIDPVDKTVD---RDLSLVKELGLK---L--IYAMNTHVHADHVTGTGLLKTKLPGVKSIISKA 95 (251)
T ss_pred CCCEEEEECCCCCcHH---HHHHHHHHCCCe---e--EEEEcCCCCchhHHHHHHHHHHCCCCeEEeccc
Confidence 3578999999532333 345677777763 3 234443 367888888899998887543
No 274
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=24.37 E-value=2.9e+02 Score=24.91 Aligned_cols=77 Identities=17% Similarity=0.304 Sum_probs=42.9
Q ss_pred CCccceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHH-HHHHHHcCCCCccEEEEEEEeCHHH-----
Q 022342 181 GIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQA-IQLLIEKGVPESHIIFLNLISAPEG----- 254 (298)
Q Consensus 181 ~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~a-i~~L~~~g~~~~~I~vv~~vas~~g----- 254 (298)
+.++|.+|+--.. + -+...|..++ .+-+.||. .++.++ +..+++.|+ +++++..-...+.
T Consensus 125 G~kIgviG~~~~~-~----~~~~~~~~~~--~~~~~d~~----~~~~~~~v~~l~~~~~---D~iIvl~H~G~~~~~~~~ 190 (257)
T cd07408 125 GVKVGVIGLTTPE-T----ATKTHPKNVK--DVTFEDPI----EEAKKVIVAALKAKGA---DVIVALGHLGVDRTSSPW 190 (257)
T ss_pred CCEEEEEeecCcC-c----ccccCccccC--CcEEecHH----HHHHHHHHHHHHhCCC---CEEEEEeCcCcCCCCCCc
Confidence 6788888875221 1 0112233332 24455664 345555 788888887 4554443332211
Q ss_pred -HHHHHHhCCCcEEEEEe
Q 022342 255 -IHCVCKRFPSLKIVTSE 271 (298)
Q Consensus 255 -l~~l~~~~p~v~i~~a~ 271 (298)
-.++.+++|++.++.+.
T Consensus 191 ~~~~la~~~~giDvIigG 208 (257)
T cd07408 191 TSTELAANVTGIDLIIDG 208 (257)
T ss_pred cHHHHHHhCCCceEEEeC
Confidence 25777889999866665
No 275
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=24.35 E-value=1.1e+02 Score=24.96 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=47.5
Q ss_pred CcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEE-EEeCHHHHHHHHHhCCCcEEEEEeecC
Q 022342 210 ERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN-LISAPEGIHCVCKRFPSLKIVTSEIDV 274 (298)
Q Consensus 210 ~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~-~vas~~gl~~l~~~~p~v~i~~a~id~ 274 (298)
...+++-+--..|.+.+..+.+.+.++|. ++|++|+ ..-.+-+..-+.+.+|++.++....+.
T Consensus 67 ~~~I~~e~~s~~T~ena~~~~~~~~~~~~--~~i~lVTs~~H~~Ra~~~~~~~~~~~~~~~~p~~~ 130 (150)
T cd06259 67 AEAILLEDRSTNTYENARFSAELLRERGI--RSVLLVTSAYHMPRALLIFRKAGLDVEVVPAPTDF 130 (150)
T ss_pred HHHeeecCCCCCHHHHHHHHHHHHHhcCC--CeEEEECCHHHHHHHHHHHHHcCCCCcEEecCcch
Confidence 45666667777899999999999999998 6787777 566677777788888875555554444
No 276
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=24.29 E-value=1.3e+02 Score=25.49 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=12.3
Q ss_pred eEEEEeCCchhHHHh
Q 022342 3 MKIFVDTDADVRLAR 17 (298)
Q Consensus 3 ~kifvd~d~d~rl~R 17 (298)
+.||+++|.+++..|
T Consensus 118 ~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 118 IEVFVDCPLEVCEQR 132 (184)
T ss_pred EEEEEeCCHHHHHHh
Confidence 358999999988777
No 277
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=24.17 E-value=3.2e+02 Score=26.25 Aligned_cols=46 Identities=22% Similarity=0.465 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHcCCCCccEEEEEEEe-----------------CHHHHHHHHHhCCCcEEEEE
Q 022342 223 GNSANQAIQLLIEKGVPESHIIFLNLIS-----------------APEGIHCVCKRFPSLKIVTS 270 (298)
Q Consensus 223 G~t~~~ai~~L~~~g~~~~~I~vv~~va-----------------s~~gl~~l~~~~p~v~i~~a 270 (298)
=.++.+.++.+.+.|+ +.|.+..++. -+.+++.+.++||++.|+|-
T Consensus 56 id~l~~~v~~~~~~GI--~~v~lFgvi~~~~Kd~~gs~a~~~~g~v~~air~iK~~~pdl~vi~D 118 (324)
T PF00490_consen 56 IDSLVKEVEEAVDLGI--RAVILFGVIDPSKKDEEGSEAYNPDGLVQRAIRAIKKAFPDLLVITD 118 (324)
T ss_dssp HHHHHHHHHHHHHTT----EEEEEEE-SCSC-BSS-GGGGSTTSHHHHHHHHHHHHSTTSEEEEE
T ss_pred HHHHHHHHHHHHHCCC--CEEEEEeeCCcccCCcchhcccCCCChHHHHHHHHHHhCCCcEEEEe
Confidence 3678889999999999 5787777743 23688999999999988874
No 278
>smart00785 AARP2CN AARP2CN (NUC121) domain. This domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU PUBMED:15112237.
Probab=23.66 E-value=32 Score=26.14 Aligned_cols=14 Identities=64% Similarity=1.089 Sum_probs=9.2
Q ss_pred CCCCCce-eCCCCch
Q 022342 276 LNEEFRV-IPGLGEF 289 (298)
Q Consensus 276 l~~~~~i-vPGlGD~ 289 (298)
|+.+..+ +||+|||
T Consensus 57 l~~n~lVHIpG~GDf 71 (83)
T smart00785 57 LNANQLVHIPGLGDF 71 (83)
T ss_pred CCCCCEEEeCCcCCe
Confidence 4444433 7999998
No 279
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=23.58 E-value=1.7e+02 Score=28.68 Aligned_cols=48 Identities=8% Similarity=0.153 Sum_probs=36.2
Q ss_pred eEeccCCCCCCCcEEEEEcCccc--------------c-hH---HHHHHHHHHHHcCCCCccEEEEEEE
Q 022342 199 LIYEKLPNDISERHVLLLDPVLA--------------T-GN---SANQAIQLLIEKGVPESHIIFLNLI 249 (298)
Q Consensus 199 ~~y~klP~~i~~~~Vil~Dp~lA--------------T-G~---t~~~ai~~L~~~g~~~~~I~vv~~v 249 (298)
..|.+++.++.|+.|+|+-++.. . -. -+.-.++.|+ .|+ ++|.++.+.
T Consensus 66 E~~vri~~~Vrg~dV~ivqs~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA--~rIt~ViPY 131 (382)
T PRK06827 66 EAKGEILESVRGKDIYILQDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKA--RRITVIMPF 131 (382)
T ss_pred CEEEEECCCCCCCeEEEEecCCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCC--CeEEEEeec
Confidence 35788888999999999988642 1 11 3455888899 898 799999863
No 280
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.57 E-value=3.1e+02 Score=26.78 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=46.0
Q ss_pred cccccceEEecCCCCCchhH-----------------HHHHHHHhhhccccccccCCCceeeccchHHHHHHhHhhh-cC
Q 022342 51 PSKKYADVIIPRGGDNHVAI-----------------DLIVQHIHTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIR-DR 112 (298)
Q Consensus 51 P~~~~ADiii~~~~~~~~~~-----------------~~i~~~i~~~l~~~~l~~~~~~l~vl~~~~~l~~llt~LR-d~ 112 (298)
-.-..||+||.|....++|+ |.+.-.|++.-+++ +|-++++||+.+.+-..-+ |+
T Consensus 258 ~~Vp~AdvVItNPTH~AVAlkY~~~~~~AP~VvAKG~d~~AlkIreiA~e~-------~Ipi~enppLARaLY~~~~v~~ 330 (363)
T COG1377 258 SDVPKADVVITNPTHYAVALKYDPEKMPAPVVVAKGVDLVALKIREIAKEH-------GIPIIENPPLARALYRQVEVGQ 330 (363)
T ss_pred hhCCCCCEEeeCcCceeeeeeeccccCCCCEEEEeCCcHHHHHHHHHHHHc-------CCceecChHHHHHHHHhcCccc
Confidence 34478999999988877765 33444555444443 4778888888888887665 66
Q ss_pred CCChhhHHHHHHHHHHH
Q 022342 113 GISKHDFVFYSDRLIRL 129 (298)
Q Consensus 113 ~T~~~~Fr~~~~rl~~l 129 (298)
..+...| .++.++..+
T Consensus 331 ~IP~e~y-~aVaevL~~ 346 (363)
T COG1377 331 QIPEELY-KAVAEVLAY 346 (363)
T ss_pred cCCHHHH-HHHHHHHHH
Confidence 6666544 444444443
No 281
>PRK05854 short chain dehydrogenase; Provisional
Probab=23.31 E-value=2.7e+02 Score=25.70 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=17.1
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCC
Q 022342 207 DISERHVLLLDPVLATGNSANQAIQLLIEKGV 238 (298)
Q Consensus 207 ~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~ 238 (298)
++++++++|. -||||-=.+..+.|.++|+
T Consensus 11 ~l~gk~~lIT---Gas~GIG~~~a~~La~~G~ 39 (313)
T PRK05854 11 DLSGKRAVVT---GASDGLGLGLARRLAAAGA 39 (313)
T ss_pred ccCCCEEEEe---CCCChHHHHHHHHHHHCCC
Confidence 4566666664 3455555556666666665
No 282
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=23.25 E-value=48 Score=25.38 Aligned_cols=41 Identities=20% Similarity=0.451 Sum_probs=24.6
Q ss_pred HHHHHHHHcCCCCccEEEEEEEeCH---------HHHHHHHHhCCCcEEEEE
Q 022342 228 QAIQLLIEKGVPESHIIFLNLISAP---------EGIHCVCKRFPSLKIVTS 270 (298)
Q Consensus 228 ~ai~~L~~~g~~~~~I~vv~~vas~---------~gl~~l~~~~p~v~i~~a 270 (298)
.+++.|.+.|+ ++|+++=++.++ +-++.+.+.+|++++..+
T Consensus 41 ~~l~~l~~~g~--~~ivvvP~fL~~G~h~~~DIp~~l~~~~~~~~~~~v~~~ 90 (105)
T PF01903_consen 41 EALERLVAQGA--RRIVVVPYFLFPGYHVKRDIPEALAEARERHPGIEVRVA 90 (105)
T ss_dssp HCCHHHHCCTC--SEEEEEEESSSSSHHHHCHHHHHHCHHHHCSTTEEEEE-
T ss_pred HHHHHHHHcCC--CeEEEEeeeecCccchHhHHHHHHHHHHhhCCceEEEEC
Confidence 35566767777 566666544432 345557777887776654
No 283
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=23.14 E-value=69 Score=26.40 Aligned_cols=36 Identities=14% Similarity=0.325 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHH
Q 022342 223 GNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCK 260 (298)
Q Consensus 223 G~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~ 260 (298)
|=++..+++.|.+.|+ ++|+++++-...++++-+.+
T Consensus 76 ~P~~~~~l~~l~~~G~--~~i~v~p~gF~~D~~Etl~d 111 (135)
T cd00419 76 EPSTDDALEELAKEGV--KNVVVVPIGFVSDHLETLYE 111 (135)
T ss_pred CCCHHHHHHHHHHcCC--CeEEEECCccccccHHHHHH
Confidence 4467789999999999 68888888666666666543
No 284
>PF08142 AARP2CN: AARP2CN (NUC121) domain; InterPro: IPR012948 This domain is the central domain of AARP2 (asparagine and aspartate rich protein 2). It is weakly similar to the GTP-binding domain of elongation factor TU []. PfAARP2 is an antigen from Plasmodium falciparum of 150 kDa, which is encoded by a unique gene on chromosome 1 []. The central region of Pfaarp2 contains blocks of repetitions encoding asparagine and aspartate residues. ; GO: 0042254 ribosome biogenesis, 0005634 nucleus
Probab=22.93 E-value=34 Score=26.10 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=13.2
Q ss_pred EEEeec-CCCCCCCce-eCCCCch
Q 022342 268 VTSEID-VALNEEFRV-IPGLGEF 289 (298)
Q Consensus 268 ~~a~id-~~l~~~~~i-vPGlGD~ 289 (298)
+++.+- ..|+.+.-+ +||+|||
T Consensus 50 v~GyvRG~~l~~n~lVHIpG~GDF 73 (85)
T PF08142_consen 50 VYGYVRGSPLSVNQLVHIPGVGDF 73 (85)
T ss_pred EEEEEccccccCCCEEEeCCcCCe
Confidence 344443 345555544 7999998
No 285
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=22.87 E-value=1.2e+02 Score=26.81 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHH
Q 022342 223 GNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCK 260 (298)
Q Consensus 223 G~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~ 260 (298)
...+..+++.++++|.+ ++|.+++.-+++..++.+..
T Consensus 192 d~~a~~~~~~l~~~g~p-~di~vig~~~~p~~~~~l~~ 228 (268)
T cd06306 192 AVAAEAAVGILRQRGLT-DQIKIVSTYLSHAVYRGLKR 228 (268)
T ss_pred chhhhHHHHHHHhcCCC-CCeEEEecCCCHHHHHHHHc
Confidence 45566789999999985 79999999999988888853
No 286
>PRK05320 rhodanese superfamily protein; Provisional
Probab=22.27 E-value=2.1e+02 Score=26.24 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=36.8
Q ss_pred CCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCC
Q 022342 208 ISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPS 264 (298)
Q Consensus 208 i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~~p~ 264 (298)
++++.|+++ +.+|.....|.+.|++.|. +++. .-..|+....+..++
T Consensus 173 ~kdk~Ivvy---C~~G~Rs~~Aa~~L~~~Gf--~~V~-----~L~GGi~~w~~~~~~ 219 (257)
T PRK05320 173 LAGKTVVSF---CTGGIRCEKAAIHMQEVGI--DNVY-----QLEGGILKYFEEVGG 219 (257)
T ss_pred cCCCeEEEE---CCCCHHHHHHHHHHHHcCC--cceE-----EeccCHHHHHHhCCC
Confidence 467777776 7889999999999999999 4654 226788888887775
No 287
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=22.08 E-value=2.1e+02 Score=26.56 Aligned_cols=46 Identities=22% Similarity=0.370 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCCcEEEEE
Q 022342 222 TGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTS 270 (298)
Q Consensus 222 TG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~~p~v~i~~a 270 (298)
+-.....+++.+.+.|. ++++++-..-.+.+.++.+.||++..+..
T Consensus 46 ~~~~~~~~~~~~~~~g~---dlIi~~g~~~~~~~~~vA~~yPd~~F~~~ 91 (306)
T PF02608_consen 46 TDADYEEAIRQLADQGY---DLIIGHGFEYSDALQEVAKEYPDTKFIII 91 (306)
T ss_dssp TCHHHHHHHHHHHHTT----SEEEEESGGGHHHHHHHHTC-TTSEEEEE
T ss_pred cHHHHHHHHHHHHHcCC---CEEEEccHHHHHHHHHHHHHCCCCEEEEE
Confidence 56788899999999998 68888877788999999999999986554
No 288
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=21.82 E-value=1.2e+02 Score=25.50 Aligned_cols=57 Identities=11% Similarity=0.147 Sum_probs=38.9
Q ss_pred cEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCCcEEEEEe
Q 022342 211 RHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSE 271 (298)
Q Consensus 211 ~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~~p~v~i~~a~ 271 (298)
.-++|+=+--.+=.=+..=-+.|++.|+ +=+|+=|.+.+++++|++..|++.+.-+.
T Consensus 63 ~plFlVGdD~~S~~WL~~~~~~L~~l~A----vGlVVNV~t~~~L~~Lr~lapgl~l~P~s 119 (142)
T PF11072_consen 63 QPLFLVGDDPLSRQWLQQNAEELKQLGA----VGLVVNVATEAALQRLRQLAPGLPLLPVS 119 (142)
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHCCC----eEEEEecCCHHHHHHHHHHcCCCeecCCC
Confidence 4566654333333444555567777777 56777789999999999999987765443
No 289
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=21.77 E-value=1.4e+02 Score=27.98 Aligned_cols=38 Identities=13% Similarity=0.154 Sum_probs=31.4
Q ss_pred chHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHH
Q 022342 222 TGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCK 260 (298)
Q Consensus 222 TG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~ 260 (298)
++..+..+++.++++|.+ ++|.+++.-.++..++.+.+
T Consensus 238 ~d~~A~ga~~al~~~g~~-~di~Vvg~~~~p~~~~~i~~ 275 (343)
T PRK10936 238 SAVAAEAAIGELRGRNLT-DKIKLVSFYLSHQVYRGLKR 275 (343)
T ss_pred CCHHHHHHHHHHHhcCCC-CCeEEEEeCCCHHHHHHHHc
Confidence 455667788999999985 78999999999999888875
No 290
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.64 E-value=2.1e+02 Score=28.66 Aligned_cols=66 Identities=18% Similarity=0.327 Sum_probs=47.9
Q ss_pred cCCCCCCCcEEEEEcCcccchHHHHHHHHHH---HHcCCCCccEEEEEEEeCHHHHHHHHHhCCCcEEEEEe
Q 022342 203 KLPNDISERHVLLLDPVLATGNSANQAIQLL---IEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSE 271 (298)
Q Consensus 203 klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L---~~~g~~~~~I~vv~~vas~~gl~~l~~~~p~v~i~~a~ 271 (298)
....+.++-.|+|+--.--+..+-.++.+.| ++.+ +...|++...++..+ +.+.+++|.|.++++.
T Consensus 33 ~~~~~~~eADvviiNTC~V~~~a~~k~~~~i~~~~~~~-p~~~iiVtGC~aq~~--~~i~~~~p~vd~v~G~ 101 (437)
T COG0621 33 ELVEDPEEADVVIINTCAVREKAEQKVRSAIGELKKLK-PDAKIIVTGCLAQAE--EEILERAPEVDIVLGP 101 (437)
T ss_pred cccCCcccCCEEEEecCeeeehHHHHHHHHHHHHHHhC-CCCEEEEeCCccccC--HHHHhhCCCceEEECC
Confidence 3444556678999998887877766665555 5556 334566666888888 9999999999988874
No 291
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=21.62 E-value=3.2e+02 Score=23.48 Aligned_cols=68 Identities=22% Similarity=0.332 Sum_probs=39.4
Q ss_pred CeEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHHhh
Q 022342 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHT 79 (298)
Q Consensus 2 d~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~ 79 (298)
|..++++.+.+.-+.|-..|.. |..+-++.+.+... .|..+-.|...+-.+.|++ .-.++.+.+.+.+
T Consensus 108 d~v~~~~~~~~~~~~r~~~r~~--r~dd~~~~~~~R~~----~y~~~~~pli~~y~~~id~----~~~i~~v~~~i~~ 175 (178)
T COG0563 108 DMVIELDVPEELLLERLLGRRV--REDDNEETVKKRLK----VYHEQTAPLIEYYSVTIDG----SGEIEEVLADILK 175 (178)
T ss_pred ceEEeeeCCHHHHHHHHhCccc--cccCCHHHHHHHHH----HHHhcccchhhhheeeccC----CCCHHHHHHHHHH
Confidence 5566667766666666666655 55555555554333 5666667766665555554 3334555555443
No 292
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=21.54 E-value=1.2e+02 Score=24.29 Aligned_cols=55 Identities=13% Similarity=0.147 Sum_probs=39.3
Q ss_pred EEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCCcEEEEE
Q 022342 212 HVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTS 270 (298)
Q Consensus 212 ~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~~p~v~i~~a 270 (298)
-++|+=+--.+=.=+..=-+.|++.|+ +=+++=|.+.++++++++..|++.+.-+
T Consensus 26 p~FlIGdD~~S~~WL~~~~~~L~~l~A----vGlVVnV~t~~~l~~Lr~lapgl~l~P~ 80 (105)
T TIGR03765 26 PLFLIGDDPASRQWLQQNAAALKSLGA----VGLVVNVETAAALQRLRALAPGLPLLPV 80 (105)
T ss_pred ceEEEeCCHHHHHHHHHHHHHHHHCCC----eEEEEecCCHHHHHHHHHHcCCCcccCC
Confidence 555554444444455566677888787 6678889999999999999997765433
No 293
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=21.52 E-value=2.2e+02 Score=25.77 Aligned_cols=77 Identities=21% Similarity=0.242 Sum_probs=43.8
Q ss_pred cCCccceEEEEecCCCCceeEeccCCCCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHH
Q 022342 180 KGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVC 259 (298)
Q Consensus 180 p~a~~g~i~i~R~~~t~~~~~y~klP~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~ 259 (298)
.+.++|.+|+--.. +. ..+|... ..+-+.||. .++.+.++.+++.|+ .++++..-...+.-.++.
T Consensus 126 ~g~kIgviG~~~~~-~~-----~~~~~~~--~~~~~~d~~----~~~~~~v~~~~~~~~---D~iVvl~H~g~~~d~~la 190 (257)
T cd07406 126 AGVKIGLLGLVEEE-WL-----ETLTIDP--EYVRYRDYV----ETARELVDELREQGA---DLIIALTHMRLPNDKRLA 190 (257)
T ss_pred CCeEEEEEEEeccc-cc-----ccccCCC--CcceEcCHH----HHHHHHHHHHHhCCC---CEEEEEeccCchhhHHHH
Confidence 36788888874221 11 1112111 233344553 456667778888887 455554444444456788
Q ss_pred HhCCCcEEEEEe
Q 022342 260 KRFPSLKIVTSE 271 (298)
Q Consensus 260 ~~~p~v~i~~a~ 271 (298)
+++|++.++.+.
T Consensus 191 ~~~~~iD~IlgG 202 (257)
T cd07406 191 REVPEIDLILGG 202 (257)
T ss_pred HhCCCCceEEec
Confidence 899998866554
No 294
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=21.43 E-value=1.3e+02 Score=22.30 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=21.3
Q ss_pred CcEEEEEcCcccchHH--HHHHHHHHHHcCCCCccEEE
Q 022342 210 ERHVLLLDPVLATGNS--ANQAIQLLIEKGVPESHIIF 245 (298)
Q Consensus 210 ~~~Vil~Dp~lATG~t--~~~ai~~L~~~g~~~~~I~v 245 (298)
++.++++. .+|.. ...|.+.|++.|. +++..
T Consensus 50 ~~~ivl~c---~~G~~~~s~~aa~~L~~~G~--~~v~~ 82 (92)
T cd01532 50 DTPIVVYG---EGGGEDLAPRAARRLSELGY--TDVAL 82 (92)
T ss_pred CCeEEEEe---CCCCchHHHHHHHHHHHcCc--cCEEE
Confidence 55677764 45643 5788899999998 56653
No 295
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=21.41 E-value=4.8e+02 Score=22.59 Aligned_cols=53 Identities=19% Similarity=0.205 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCC-cEEEEEeecCCCCC
Q 022342 222 TGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPS-LKIVTSEIDVALNE 278 (298)
Q Consensus 222 TG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~~p~-v~i~~a~id~~l~~ 278 (298)
|-.|+..|++.-++.|. ++|++++. +...-.++.+..+. +++++..=..++.+
T Consensus 12 T~~tle~a~erA~elgi--k~~vVAS~--tG~tA~k~lemveg~lkvVvVthh~Gf~e 65 (186)
T COG1751 12 TDETLEIAVERAKELGI--KHIVVASS--TGYTALKALEMVEGDLKVVVVTHHAGFEE 65 (186)
T ss_pred hHHHHHHHHHHHHhcCc--ceEEEEec--ccHHHHHHHHhcccCceEEEEEeeccccc
Confidence 55667777777777776 45544432 22222333344443 44444433344333
No 296
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=21.41 E-value=3.1e+02 Score=23.98 Aligned_cols=53 Identities=8% Similarity=-0.007 Sum_probs=38.6
Q ss_pred EEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCCcEEEEEeecC
Q 022342 215 LLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDV 274 (298)
Q Consensus 215 l~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~~p~v~i~~a~id~ 274 (298)
++|-+++||....... +... ...+.++=.|++.++...+.+|+++++.+.+..
T Consensus 47 VLDiGCG~G~~~~~L~----~~~~---~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~ 99 (204)
T TIGR03587 47 ILELGANIGMNLAALK----RLLP---FKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD 99 (204)
T ss_pred EEEEecCCCHHHHHHH----HhCC---CCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC
Confidence 7899999998655443 2211 234777788999999998888988888766544
No 297
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=21.40 E-value=2.9e+02 Score=20.29 Aligned_cols=44 Identities=18% Similarity=0.401 Sum_probs=33.2
Q ss_pred cccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCC
Q 022342 219 VLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFP 263 (298)
Q Consensus 219 ~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~~p 263 (298)
++.+|+-..+-.+-|.+.|..+.+|.+++ --+++..+++.+.++
T Consensus 4 iIG~G~mg~al~~~l~~~g~~~~~v~~~~-~r~~~~~~~~~~~~~ 47 (96)
T PF03807_consen 4 IIGAGNMGSALARGLLASGIKPHEVIIVS-SRSPEKAAELAKEYG 47 (96)
T ss_dssp EESTSHHHHHHHHHHHHTTS-GGEEEEEE-ESSHHHHHHHHHHCT
T ss_pred EECCCHHHHHHHHHHHHCCCCceeEEeec-cCcHHHHHHHHHhhc
Confidence 35778877777888888886545666543 778899999999887
No 298
>PRK07667 uridine kinase; Provisional
Probab=21.38 E-value=79 Score=27.31 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=22.6
Q ss_pred HHHHHHHHhhhhhHHHhhcc---cccccceEEec
Q 022342 31 DSVLEQYAKFVKPAFDDFVL---PSKKYADVIIP 61 (298)
Q Consensus 31 ~~v~~~~~~~~~p~~~~~i~---P~~~~ADiii~ 61 (298)
.....+|.+.-.|.+..|+. | +..||+||+
T Consensus 161 ~~~~~~~~~r~~~a~~~y~~~~~~-~~~ad~i~~ 193 (193)
T PRK07667 161 QKNLSKFKNRYWKAEDYYLETESP-KDRADLVIK 193 (193)
T ss_pred HhHHHHHHHHhHHHHHHHHhhcCh-HhhCcEEeC
Confidence 44556777766688888855 7 999999984
No 299
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=21.21 E-value=1.7e+02 Score=22.28 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=21.8
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCC
Q 022342 209 SERHVLLLDPVLATGNSANQAIQLLIEKGVP 239 (298)
Q Consensus 209 ~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~ 239 (298)
+++.+++. +++|.....|...|++.|.+
T Consensus 65 ~~~~ivv~---C~~G~rs~~a~~~L~~~G~~ 92 (109)
T cd01533 65 PRTPIVVN---CAGRTRSIIGAQSLINAGLP 92 (109)
T ss_pred CCCeEEEE---CCCCchHHHHHHHHHHCCCC
Confidence 35666666 67888888889999999983
No 300
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=20.95 E-value=1.9e+02 Score=21.63 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=23.2
Q ss_pred CCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEE
Q 022342 209 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHII 244 (298)
Q Consensus 209 ~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~ 244 (298)
+++.+++.. .+|.....|...|++.|. +++.
T Consensus 60 ~~~~ivvyC---~~G~rs~~a~~~L~~~G~--~~v~ 90 (101)
T cd01518 60 KGKKVLMYC---TGGIRCEKASAYLKERGF--KNVY 90 (101)
T ss_pred CCCEEEEEC---CCchhHHHHHHHHHHhCC--ccee
Confidence 456777765 478888888899999998 4553
No 301
>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=20.63 E-value=98 Score=30.35 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCCCccEEEEE
Q 022342 224 NSANQAIQLLIEKGVPESHIIFLN 247 (298)
Q Consensus 224 ~t~~~ai~~L~~~g~~~~~I~vv~ 247 (298)
+.+|-|.+.|++.|.++++|++.-
T Consensus 64 ADvcHAYqiLrkgGikeEnIvv~M 87 (477)
T KOG1348|consen 64 ADVCHAYQILRKGGIKEENIVVMM 87 (477)
T ss_pred hhHHHHHHHHHhcCCCchhEEEEE
Confidence 479999999999999999999876
No 302
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=20.59 E-value=1.2e+02 Score=29.89 Aligned_cols=50 Identities=18% Similarity=0.342 Sum_probs=35.3
Q ss_pred CCCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCC
Q 022342 206 NDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFP 263 (298)
Q Consensus 206 ~~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~~p 263 (298)
.++++++|+| +.+|+...+++..|.++|+ ++|++++= +.+-.+.+.+.|+
T Consensus 177 ~~l~~kkvlv----iGaG~~a~~va~~L~~~g~--~~I~V~nR--t~~ra~~La~~~~ 226 (414)
T PRK13940 177 DNISSKNVLI----IGAGQTGELLFRHVTALAP--KQIMLANR--TIEKAQKITSAFR 226 (414)
T ss_pred cCccCCEEEE----EcCcHHHHHHHHHHHHcCC--CEEEEECC--CHHHHHHHHHHhc
Confidence 4677888885 5689999999999999998 56777663 2233344444443
No 303
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=20.59 E-value=1.1e+02 Score=28.40 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=30.7
Q ss_pred CcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHh
Q 022342 210 ERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKR 261 (298)
Q Consensus 210 ~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~ 261 (298)
+++|+| +.+||+..+++-.|.+.|+ ++|.+++- +++-.+.+.+.
T Consensus 122 ~~~vli----lGaGGaarAi~~aL~~~g~--~~i~i~nR--~~~~a~~la~~ 165 (272)
T PRK12550 122 DLVVAL----RGSGGMAKAVAAALRDAGF--TDGTIVAR--NEKTGKALAEL 165 (272)
T ss_pred CCeEEE----ECCcHHHHHHHHHHHHCCC--CEEEEEeC--CHHHHHHHHHH
Confidence 356664 5689999999999999999 56777763 23334555443
No 304
>PLN02772 guanylate kinase
Probab=20.39 E-value=3.5e+02 Score=26.72 Aligned_cols=68 Identities=15% Similarity=0.239 Sum_probs=37.3
Q ss_pred eEEEEeCCchhHHHhhhhcccccCCCCHHHHHHHHHhhhhhHHHhhcccccccceEEecCCCCCchhHHHHHHHH
Q 022342 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHI 77 (298)
Q Consensus 3 ~kifvd~d~d~rl~Rri~RD~~ergr~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i 77 (298)
+.||+-+++...|.+|+. .||.+-++.+..-++..+...+. .-+....|.+|.|. +-..|.+.+.+.|
T Consensus 249 v~IFI~PPSlEeLe~RL~----~RGteseE~I~kRL~~A~~Ei~~--~~~~~~fD~vIvND-dLe~A~~~L~~iL 316 (398)
T PLN02772 249 IFIFICPPSMEELEKRLR----ARGTETEEQIQKRLRNAEAELEQ--GKSSGIFDHILYND-NLEECYKNLKKLL 316 (398)
T ss_pred EEEEEeCCCHHHHHHHHH----hcCCCCHHHHHHHHHHHHHHHhh--ccccCCCCEEEECC-CHHHHHHHHHHHH
Confidence 568898888888888876 46775555544433322111111 01224679888763 3334444444443
No 305
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.18 E-value=1.2e+02 Score=27.30 Aligned_cols=53 Identities=25% Similarity=0.265 Sum_probs=36.7
Q ss_pred CcccchH-HHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCCcEEEEEeecCC
Q 022342 218 PVLATGN-SANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVA 275 (298)
Q Consensus 218 p~lATG~-t~~~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~~p~v~i~~a~id~~ 275 (298)
|+.+.|| +-..-++.|.+.|+ .++++=+....++-++++.+.|++ ++.++|-.
T Consensus 75 pv~~gGGIrs~edv~~l~~~G~--~~vivGtaa~~~~~l~~~~~~~g~---ivvslD~~ 128 (228)
T PRK04128 75 KVQVGGGLRTYESIKDAYEIGV--ENVIIGTKAFDLEFLEKVTSEFEG---ITVSLDVK 128 (228)
T ss_pred CEEEcCCCCCHHHHHHHHHCCC--CEEEECchhcCHHHHHHHHHHcCC---EEEEEEcc
Confidence 4445554 33455666777899 577765543389999999999985 66678874
No 306
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=20.04 E-value=3e+02 Score=25.65 Aligned_cols=50 Identities=18% Similarity=0.239 Sum_probs=34.4
Q ss_pred CCCCcEEEEEcCcccchHHHHHHHHHHHHcCCCCccEEEEEEEeC-HHHHHHHHHhC
Q 022342 207 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISA-PEGIHCVCKRF 262 (298)
Q Consensus 207 ~i~~~~Vil~Dp~lATG~t~~~ai~~L~~~g~~~~~I~vv~~vas-~~gl~~l~~~~ 262 (298)
++++++|+|+ .+||+..+++-.|.+.|+ ++|.+++-=.. .+-.+.+.+.+
T Consensus 121 ~~~~k~vlvl----GaGGaarAi~~~l~~~g~--~~i~i~nRt~~~~~ka~~la~~~ 171 (288)
T PRK12749 121 DIKGKTMVLL----GAGGASTAIGAQGAIEGL--KEIKLFNRRDEFFDKALAFAQRV 171 (288)
T ss_pred CcCCCEEEEE----CCcHHHHHHHHHHHHCCC--CEEEEEeCCccHHHHHHHHHHHh
Confidence 4677888754 579998888888888999 67887774221 34455565544
No 307
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=20.03 E-value=3.4e+02 Score=27.51 Aligned_cols=45 Identities=18% Similarity=0.140 Sum_probs=31.6
Q ss_pred hHHHH-HHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCCcEEE
Q 022342 223 GNSAN-QAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIV 268 (298)
Q Consensus 223 G~t~~-~ai~~L~~~g~~~~~I~vv~~vas~~gl~~l~~~~p~v~i~ 268 (298)
|.++. ..++....+|-+ +++-+|..-..++-+.++.+..|+.-|.
T Consensus 162 g~~ly~~v~~~~~~~~~~-~~~g~VvGAT~p~~~~~iR~~~p~~~iL 207 (477)
T PRK05500 162 ENPFYLQVVKEAKTWGTP-EQLGLEVGTTNPEVLAKIRQIAPERLIL 207 (477)
T ss_pred CCcHHHHHHHHHHHhCCC-CceEEEECCCChHHHHHHHHhCCCCEEE
Confidence 44444 455667778854 5777777777789999999999965553
Done!