RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 022342
(298 letters)
>d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId:
5811]}
Length = 224
Score = 219 bits (559), Expect = 6e-72
Identities = 111/217 (51%), Positives = 156/217 (71%), Gaps = 4/217 (1%)
Query: 84 HDLCKIYPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEK 143
D+ +PNV +++ T Q+R M T+IRD+ K +FVFY+DRLIRL++E L LPF +K
Sbjct: 7 QDIITRFPNVVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKK 66
Query: 144 QVVTPTGSMYTGVDFCKKLCGVSIVRS---MENALRACCKGIKIGKILIHRDGDNGK-QL 199
+V TP Y GV F K+CGVSIVR+ ME+ LRA C+G++IGKILI RD + +L
Sbjct: 67 EVTTPLDVSYHGVSFYSKICGVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTAEPKL 126
Query: 200 IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVC 259
IYEKLP DI ER V+LLDP+ AT S +AI++L+ GV E IIF+N+++AP+GI V
Sbjct: 127 IYEKLPADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILAAPQGIERVF 186
Query: 260 KRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGT 296
K +P +++VT+ +D+ LN + ++PG+G+FGDRYFGT
Sbjct: 187 KEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGT 223
>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus
[TaxId: 1394]}
Length = 208
Score = 185 bits (470), Expect = 1e-58
Identities = 72/208 (34%), Positives = 105/208 (50%), Gaps = 7/208 (3%)
Query: 93 VYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSM 152
VYV I+ T IRD+ +F D + L+ LP E ++ TP
Sbjct: 3 VYVFDHPL-IQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPVSKA 61
Query: 153 YTGVDFCKKLCGVSIVRS---MENALRACCKGIKIGKILIHRDGDNGK-QLIYEKLPNDI 208
V KKL + I+R+ M + + K+G I ++RD K Y KLP+D+
Sbjct: 62 RAKVIAGKKLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDPQTLKPVEYYVKLPSDV 121
Query: 209 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIV 268
ER +++DP+LATG SA AI L ++G I F+ LI+APEG+ V P + I
Sbjct: 122 EERDFIIVDPMLATGGSAVAAIDALKKRGAK--SIKFMCLIAAPEGVKAVETAHPDVDIY 179
Query: 269 TSEIDVALNEEFRVIPGLGEFGDRYFGT 296
+ +D LN+ ++PGLG+ GDR FGT
Sbjct: 180 IAALDERLNDHGYIVPGLGDAGDRLFGT 207
>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus
[TaxId: 274]}
Length = 208
Score = 183 bits (466), Expect = 4e-58
Identities = 65/209 (31%), Positives = 108/209 (51%), Gaps = 7/209 (3%)
Query: 92 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGS 151
+ ++ ++ +RD+ DF ++ + L+ + L E V TP
Sbjct: 2 RITLVDHPL-VQHKLAHLRDKRTGPKDFRELAEEVAMLMAYEAMRDLELEETTVETPIAP 60
Query: 152 MYTGVDFCKKLCGVSIVRS---MENALRACCKGIKIGKILIHRDGDNGKQ-LIYEKLPND 207
V KKL V+I+R+ M + ++G I ++RD ++ Y KLP D
Sbjct: 61 ARVKVLSGKKLALVAILRAGLVMVEGILKLVPHARVGHIGLYRDPESLNPVQYYIKLPPD 120
Query: 208 ISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKI 267
I+ER LLDP+LATG SA+ A+ LL E+G + + + +++APEG+ + K P ++
Sbjct: 121 IAERRAFLLDPMLATGGSASLALSLLKERG--ATGVKLMAILAAPEGLERIAKDHPDTEV 178
Query: 268 VTSEIDVALNEEFRVIPGLGEFGDRYFGT 296
V + ID LN+ ++PGLG+ GDR +GT
Sbjct: 179 VVAAIDERLNDHGYIVPGLGDAGDRIYGT 207
>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima
[TaxId: 2336]}
Length = 210
Score = 174 bits (442), Expect = 1e-54
Identities = 67/209 (32%), Positives = 104/209 (49%), Gaps = 7/209 (3%)
Query: 92 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGS 151
N+ V+ I+ T++RD+ +F + L+ HL E +V TP
Sbjct: 4 NLVVVDHPL-IKHKLTIMRDKNTGPKEFRELLREITLLLAYEATRHLKCEEVEVETPITK 62
Query: 152 MYTGVDFCKKLCGVSIVRS---MENALRACCKGIKIGKILIHRDGDNGKQ-LIYEKLPND 207
K + V I+R+ M + + +G I I+RD + + Y KLP
Sbjct: 63 TIGYRINDKDIVVVPILRAGLVMADGILELLPNASVGHIGIYRDPETLQAVEYYAKLPPL 122
Query: 208 ISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKI 267
++ V LLDP+LATG S+ +AI++L E G I + LI+APEG+ V K++ +KI
Sbjct: 123 NDDKEVFLLDPMLATGVSSIKAIEILKENGAK--KITLVALIAAPEGVEAVEKKYEDVKI 180
Query: 268 VTSEIDVALNEEFRVIPGLGEFGDRYFGT 296
+ +D LN+ +IPGLG+ GDR F T
Sbjct: 181 YVAALDERLNDHGYIIPGLGDAGDRLFRT 209
>d1xtta1 c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 215
Score = 165 bits (419), Expect = 4e-51
Identities = 53/217 (24%), Positives = 105/217 (48%), Gaps = 17/217 (7%)
Query: 93 VYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSM 152
+YVI + T +RD+ + +F RL R++ L + +V TP G
Sbjct: 2 LYVIDKPI-TLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVK 60
Query: 153 YTGVDFC--KKLCGVSIVR---SMENALRACCKGIKIGKILIHRDGDNGKQ--------L 199
GVD + ++I+R + L + G I R +GK+ +
Sbjct: 61 TKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYI 120
Query: 200 IYEKLPNDISE-RHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCV 258
Y+K+P+ ++ +V++ DP++AT ++ + ++ +++ I +++IS+ G++ +
Sbjct: 121 YYKKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVKANP--KRIYIVSIISSEYGVNKI 178
Query: 259 CKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFG 295
++P + + T ID LN + ++PGLG+ GDR FG
Sbjct: 179 LSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG 215
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 100 bits (251), Expect = 2e-25
Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 22/131 (16%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVII 60
++KI V ++ ++I RD RG ++V + + A+ ++P D+
Sbjct: 147 ADLKIGVVPVINLEWIQKIHRDRATRGYTTEAVTDVILR-RMHAYVHCIVPQFSQTDINF 205
Query: 61 PRGGDNHVAIDLIVQHIHTKLGQHDLCKI---------------------YPNVYVIQST 99
R + I + I T + + N V+
Sbjct: 206 QRVPVVDTSNPFIARWIPTADESVVVIRFRNPRGIDFPYLTSMIHGSWMSRANSIVVPGN 265
Query: 100 FQIRGMHTLIR 110
M ++
Sbjct: 266 KLDLAMQLILT 276
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 89.6 bits (221), Expect = 5e-22
Identities = 55/81 (67%), Positives = 65/81 (80%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVII 60
MK+FVDTDAD RL+RR+ RD ERGRD++ +L QY FVKPAF++F LP+KKYADVII
Sbjct: 131 FQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVII 190
Query: 61 PRGGDNHVAIDLIVQHIHTKL 81
PRG DN VAI+LIVQHI L
Sbjct: 191 PRGADNLVAINLIVQHIQDIL 211
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 68.6 bits (167), Expect = 6e-14
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 19/87 (21%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERG---RDVDSVLEQYAKF----------------V 41
++ I+VD D+ I R R D DS YAK
Sbjct: 215 VDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEIN 274
Query: 42 KPAFDDFVLPSKKYADVIIPRGGDNHV 68
+LP+++ A +I+ + ++ V
Sbjct: 275 WLNLKQNILPTRERASLILTKSANHAV 301
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 46.3 bits (108), Expect = 9e-07
Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVII 60
+ +++D ++R AR + +++ + +Y K + + + P K ADV+
Sbjct: 144 FDFVVYLDCPREIRFARENDQ----VKQNIQKFINRYWK-AEDYYLETEEP-IKRADVVF 197
>d1vcha1 c.61.1.1 (A:2-175) Putative phosphoribosyltransferase
TTHA1613 {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 38.5 bits (89), Expect = 3e-04
Identities = 19/136 (13%), Positives = 43/136 (31%), Gaps = 4/136 (2%)
Query: 113 GISKHDFVFYSD-RLIRLVVEHGLGHLPFTEKQVVTP-TGSMYTGVDFCKKLCGVSIVRS 170
G F D R E +P + + T T + + L +V
Sbjct: 22 GRRIPLVEFLGDPEFTRAAAEALRPLVPKEAEILFTTETSPIPLTHVLAEALGLPYVVAR 81
Query: 171 MENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAI 230
R + I ++ G + + + + V+L+ V+A+G +
Sbjct: 82 RRR--RPYMEDPIIQEVQTLTLGVGEVLWLDRRFAEKLLNQRVVLVSDVVASGETMRAME 139
Query: 231 QLLIEKGVPESHIIFL 246
++++ G + +
Sbjct: 140 KMVLRAGGHVVARLAV 155
>d1wd5a_ c.61.1.1 (A:) Putative phosphoribosyltransferase TT1426
(TTHA1462) {Thermus thermophilus [TaxId: 274]}
Length = 208
Score = 36.6 bits (84), Expect = 0.002
Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 195 NGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEG 254
++ + R V+L+D +ATG S A+ ++ ++G ++ +++PE
Sbjct: 105 RAERYRRVRPKAARKGRDVVLVDDGVATGASMEAALSVVFQEGPRR--VVVAVPVASPEA 162
Query: 255 I 255
+
Sbjct: 163 V 163
>d1g2qa_ c.61.1.1 (A:) Adenine PRTase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 178
Score = 32.4 bits (73), Expect = 0.036
Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 7/105 (6%)
Query: 142 EKQVVTPTGSMYTGVDFCKKLCGVSIVRSMENALRACCKGIKIGKILIHRDGDNGKQLIY 201
+ V + G L + + + + G L
Sbjct: 61 DYIVGLESRGFLFGPTLALALGVGFVPVRKA-------GKLPGECFKATYEKEYGSDLFE 113
Query: 202 EKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL 246
+ + +V+++D ++ATG SA A +L+ + F+
Sbjct: 114 IQKNAIPAGSNVIIVDDIIATGGSAAAAGELVEQLEANLLEYNFV 158
>d1a3ca_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR {Bacillus
subtilis [TaxId: 1423]}
Length = 178
Score = 32.3 bits (73), Expect = 0.036
Identities = 19/92 (20%), Positives = 35/92 (38%)
Query: 150 GSMYTGVDFCKKLCGVSIVRSMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDIS 209
G G+ K+L L + ++ + +P DI+
Sbjct: 36 GIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYRDDLSKKTSNDEPLVKGADIPVDIT 95
Query: 210 ERHVLLLDPVLATGNSANQAIQLLIEKGVPES 241
++ V+L+D VL TG + + L++ G P S
Sbjct: 96 DQKVILVDDVLYTGRTVRAGMDALVDVGRPSS 127
>d1l1qa_ c.61.1.1 (A:) Adenine PRTase {Giardia lamblia [TaxId:
5741]}
Length = 181
Score = 31.6 bits (71), Expect = 0.071
Identities = 21/109 (19%), Positives = 27/109 (24%), Gaps = 6/109 (5%)
Query: 145 VVTPTGSMYTGVDFCKKLCGVSIVRSMENALRACCKGIKIGKILIHRDGDNGKQLIYEKL 204
V + G L + L I +
Sbjct: 57 VGIESRGFILGGIVANSLGVGFVALRKAGKLPGDVCKC------TFDMEYQKGVTIEVQK 110
Query: 205 PNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPE 253
VLL D VLATG + AI+L GV +I L
Sbjct: 111 RQLGPHDVVLLHDDVLATGGTLLAAIELCETAGVKPENIYINVLYEIEA 159
>d1qb7a_ c.61.1.1 (A:) Adenine PRTase {Leishmania donovani [TaxId:
5661]}
Length = 236
Score = 30.8 bits (69), Expect = 0.14
Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 12/114 (10%)
Query: 190 HRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL--- 246
+ +++ + + V+L+D VLATG +A +QL+ ++ +
Sbjct: 118 KEYKEAAPEVMTIRYGSIGKGSRVVLIDDVLATGGTALSGLQLVEASDAVVVEMVSILSI 177
Query: 247 -------NLISAPEGIHCVCKRFPSLKIVTSEIDVALNE-EFRVIPGLGEFGDR 292
+ S + K F SL + + + + P + GD
Sbjct: 178 PFLKAAEKIHSTANSRYKDIK-FISLLSDDALTEENCGDSKNYTGPRVLSCGDV 230
>d1vdma1 c.61.1.1 (A:1-153) Pprobable purine
phosphoribosyltransferase PH0095 {Pyrococcus horikoshii
[TaxId: 53953]}
Length = 153
Score = 29.4 bits (65), Expect = 0.31
Identities = 17/84 (20%), Positives = 33/84 (39%)
Query: 163 CGVSIVRSMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLAT 222
G+ + + L + K D K +I + D+ ++ V+++D V T
Sbjct: 36 GGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGEKPVITIPIHGDLKDKRVVIVDDVSDT 95
Query: 223 GNSANQAIQLLIEKGVPESHIIFL 246
G + I+ + + G E I L
Sbjct: 96 GKTLEVVIEEVKKLGAKEIKIACL 119
>d1zn7a1 c.61.1.1 (A:3-180) Adenine PRTase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 178
Score = 29.2 bits (65), Expect = 0.36
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 211 RHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL 246
+ V+++D +LATG + N A +LL + L
Sbjct: 119 QRVVVVDDLLATGGTMNAACELLGRLQAEVLECVSL 154
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 27.7 bits (61), Expect = 1.7
Identities = 4/45 (8%), Positives = 12/45 (26%), Gaps = 5/45 (11%)
Query: 5 IFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFV 49
+ D R+ + R R + + ++ +
Sbjct: 159 VLGALPEDR-HIDRLAK----RQRPGERLDLAMLAAIRRVYGLLA 198
>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus
subtilis [TaxId: 1423]}
Length = 164
Score = 27.3 bits (60), Expect = 1.8
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 5 IFVDTDADVRLAR-RIRRDTVERGRDVDSVLEQYAKFVKPA 44
+++ D V R R+R D G+D+DS+LE Y + + A
Sbjct: 98 VYLHADPSVIKKRLRVRGDEYIEGKDIDSILELYREVMSNA 138
>d2fufa1 d.89.1.1 (A:131-256) The origin DNA-binding domain of SV40
T-antigen {Simian virus 40, Sv40 [TaxId: 10633]}
Length = 126
Score = 26.7 bits (59), Expect = 1.9
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 10/40 (25%)
Query: 145 VVTPTGSMYTGV-DFCKKLCGVSIVRSMENALRACCKGIK 183
+TP + + ++ +KLC S + CKG+
Sbjct: 67 FLTPHRHRVSAINNYAQKLCTFSFL---------ICKGVN 97
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 27.3 bits (60), Expect = 2.7
Identities = 6/45 (13%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 5 IFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFV 49
+ + + RR+R R R + + ++ + V
Sbjct: 161 VVTTLNVEE-HIRRLRT----RARIGEQIDITLIATLRNVYFMLV 200
>d1vlya1 b.44.2.1 (A:244-325) Hypothetical protein YgfZ, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 82
Score = 25.5 bits (56), Expect = 3.2
Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Query: 164 GVSIVRSMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDP 218
G + M R + G +L ++G+ ++ + ND+ + +
Sbjct: 19 GEDLELKMGENWR------RTGTVLAAVKLEDGQVVVQVVMNNDMEPDSIFRVRD 67
>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 144
Score = 26.0 bits (57), Expect = 3.3
Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 9/102 (8%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVII 60
+N+ + + I RD + + + + + F L + ++
Sbjct: 24 INIFKLPASGPAREASFVISRDASQGDAPFADYVARQLENAEKQLPGFKLHKRWDINI-- 81
Query: 61 PRGGDNHVAIDLIVQHIH--TKLGQHDLCKIY-PNVYVIQST 99
H A+ L Q L + P V + T
Sbjct: 82 ----HGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLT 119
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.143 0.428
Gapped
Lambda K H
0.267 0.0483 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,168,582
Number of extensions: 56834
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 31
Length of query: 298
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 213
Effective length of database: 1,240,546
Effective search space: 264236298
Effective search space used: 264236298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.8 bits)