Query 022343
Match_columns 298
No_of_seqs 111 out of 219
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 02:48:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3224 Uncharacterized conser 100.0 8.1E-88 1.7E-92 613.7 14.9 248 21-287 29-278 (278)
2 PF04176 TIP41: TIP41-like fam 100.0 7.3E-82 1.6E-86 557.8 15.6 178 60-254 1-182 (182)
3 PF08332 CaMKII_AD: Calcium/ca 38.6 1.1E+02 0.0024 26.1 6.2 64 169-239 47-120 (128)
4 cd00914 PCD_DCoH_subfamily_b P 27.3 98 0.0021 23.6 3.8 24 45-70 30-53 (76)
5 cd00488 PCD_DCoH PCD_DCoH: The 22.5 1.3E+02 0.0029 22.7 3.7 24 45-70 29-52 (75)
6 cd00913 PCD_DCoH_subfamily_a P 20.9 1.5E+02 0.0032 22.5 3.7 24 45-70 30-53 (76)
7 PF05820 DUF845: Baculovirus p 19.3 1.1E+02 0.0024 26.1 2.8 30 187-216 24-54 (119)
8 PF08845 SymE_toxin: Toxin Sym 16.6 63 0.0014 23.9 0.7 31 176-206 24-55 (57)
9 PF09346 SMI1_KNR4: SMI1 / KNR 14.6 90 0.002 24.1 1.2 19 40-59 2-20 (130)
10 PF07249 Cerato-platanin: Cera 14.2 1.5E+02 0.0033 25.1 2.5 41 59-99 64-107 (119)
No 1
>KOG3224 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=8.1e-88 Score=613.74 Aligned_cols=248 Identities=44% Similarity=0.683 Sum_probs=226.6
Q ss_pred CCCcEEEcCeEEEEeecCccCchHHHHHHHHcCCCCCCceeeCCcEEEEEEcCCCceEEEchhhhhhccccCCCCCeeec
Q 022343 21 ERRGLRIRGWEIESRKRSILNSSSVERWEQKLETNHLPEMVFGESCLVLKHVESGTKIHFNAFDALSGWKQESLPPVEVP 100 (298)
Q Consensus 21 ~~~~~~~~~W~i~~~k~pIl~s~e~d~~~~~L~~~~lPEMvFg~N~L~i~h~~sg~~i~Fna~DAL~~v~~~~~~~vkVa 100 (298)
....|+++.|+|.+.++|||+|.|++.++.+|.++++||||||+|+|+|+|..++ +|+|||+|||++|+.++.|+++|+
T Consensus 29 ~~~k~s~~~~t~k~~~~~il~s~el~~~q~elk~~~~PeMvFg~N~l~ie~~~~~-sieFna~DALk~V~~~~~~~veV~ 107 (278)
T KOG3224|consen 29 KQDKFSFKYWTIKSQRGSILKSHELENLQSELKGFPLPEMVFGNNYLVIEHKNQP-SIEFNALDALKMVGTKPLPPVEVA 107 (278)
T ss_pred cCcCccccceEEEecccchhhHHHHHHHHHhhcCCCCcceeecccEEEEEeCCCC-ceeecHHHHHHHhccCCCCCeEee
Confidence 5578999999999999999999999999999999999999999999999999766 999999999999999989999999
Q ss_pred cchhhhhcCCcc--cccccceeeeEecccccccccccCCCcCCCCCCCCCCCCcceeccccccchhhhCCCCceeeceee
Q 022343 101 AAAQWKFRSKPF--EQLILDYDYTFTTPYCGSETIEMDTDKHGTRDNLDGSSSLHWEDCKEKIDVVALASKEPILFYDEV 178 (298)
Q Consensus 101 ~A~~W~~r~~~~--~~~~kp~DWTytT~Y~GT~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~I~~~kL~~~dpILFy~ev 178 (298)
||+.|+.++++. .++++||||||||+|+||.+..-. +. -...++.||++||+++++||||+|+
T Consensus 108 ~a~~W~~sr~~~~~~~vi~pfDWTyTT~YqGT~~~~~~--------------k~-t~e~~~~~pl~kL~~~e~ILFy~ei 172 (278)
T KOG3224|consen 108 AAKDWAKSRKKQEEYEVIKPFDWTYTTDYQGTEQRPNA--------------KF-TTEIDQNIPLQKLLNREQILFYDEI 172 (278)
T ss_pred hhHHHHHhccchhhhccccCccceEecccccceecccc--------------cc-ccchhccchHHHHhcccCeeeecce
Confidence 999999654443 578999999999999999863210 11 1223467889999999999999999
Q ss_pred eeeccccCCCceEEEEEEEEEeCCchheeeeeeEEeeceEEEEeeeeEEeeecCCCCCeEEeeecchhhhHHHHHhcCCC
Q 022343 179 VLYEDELADNGVSLLTVKVRVMPSSWFLLLRFWLRVDGVLMRLRDTRMHCVFSDSGNPVILRENCWREATVQALAAKGYP 258 (298)
Q Consensus 179 ~LfEDEL~DnG~s~lsVKiRVMp~~fflL~RffLRVD~VlvRi~DTRiyheF~~~~~~~viRE~~~rE~~~~~l~~~~~~ 258 (298)
+||||||||||||+|+|||||||++||||+|||||||+||+|++|||||++|+ +++|||||++|||+|++|.+++..
T Consensus 173 iLFEDELADnGiS~l~VrvRVM~~~~flLlRf~lRVD~VLvRl~dTRi~~~~~---~d~vlrE~~~rEA~y~~l~~~~~~ 249 (278)
T KOG3224|consen 173 ILFEDELADNGISMLDVRVRVMPGHLFLLLRFFLRVDKVLVRLNDTRIYIEFL---NDFVLRECRKREATYQKLIAKIPV 249 (278)
T ss_pred eeehhhhhhCCceeEEEEEEEecccchHHHHHHhhccceEEEEeccEEEEEec---CCcchhhHHhhhcchhhhhccCcc
Confidence 99999999999999999999999999999999999999999999999999999 569999999999999999998877
Q ss_pred CCCCCCCChhHHhhcCCeeEEEEEEEEeC
Q 022343 259 TDSAAYSDPSIISQRLPVIMHRTQKLKIS 287 (298)
Q Consensus 259 ~~~~~~~D~n~i~~~Lpv~~~~~ekl~~~ 287 (298)
...+.+.||||++++|||++++++||.|+
T Consensus 250 ~~~~~l~D~~~~se~lPvv~~~~~kl~f~ 278 (278)
T KOG3224|consen 250 GGDKLLDDPNWLSERLPVVKHQIYKLNFK 278 (278)
T ss_pred cccccccCcHHHHhhCchhhhheeeeccC
Confidence 67789999999999999999999999985
No 2
>PF04176 TIP41: TIP41-like family ; InterPro: IPR007303 The TOR signalling pathway activates a cell-growth program in response to nutrients []. TIP41 interacts with TAP42 and negatively regulates the TOR signalling pathway [].
Probab=100.00 E-value=7.3e-82 Score=557.80 Aligned_cols=178 Identities=49% Similarity=0.827 Sum_probs=165.0
Q ss_pred eeeCCcEEEEEEcCCCceEEEchhhhhhccccCCCCCeeeccchhhhhc-CCcc---cccccceeeeEeccccccccccc
Q 022343 60 MVFGESCLVLKHVESGTKIHFNAFDALSGWKQESLPPVEVPAAAQWKFR-SKPF---EQLILDYDYTFTTPYCGSETIEM 135 (298)
Q Consensus 60 MvFg~N~L~i~h~~sg~~i~Fna~DAL~~v~~~~~~~vkVa~A~~W~~r-~~~~---~~~~kp~DWTytT~Y~GT~~~~~ 135 (298)
||||||+|+|+|.++||+|+|||+|||++|+++..|++||+||++|+.+ .... .+++|||||||||+|+||+.+..
T Consensus 1 MvFg~N~l~l~h~~sg~~i~Fna~DAL~~v~~~~~~~vkV~~a~~W~~sr~~~~~~~~~~~k~~DWTytT~Y~Gt~~~~~ 80 (182)
T PF04176_consen 1 MVFGNNFLRLEHEKSGWSIEFNALDALKLVDKTDDPQVKVAYAKEWKKSRKENEEEIKEVVKPYDWTYTTNYKGTVSGDS 80 (182)
T ss_pred CCCCCCEEEEEEcCCCcEEEEcHHHHHHhhhhcCCCceEEehhhhhhhhccccccccccccccccccccCcccCcccCcc
Confidence 9999999999999999999999999999999999889999999999853 3322 37789999999999999986421
Q ss_pred CCCcCCCCCCCCCCCCcceeccccccchhhhCCCCceeeceeeeeeccccCCCceEEEEEEEEEeCCchheeeeeeEEee
Q 022343 136 DTDKHGTRDNLDGSSSLHWEDCKEKIDVVALASKEPILFYDEVVLYEDELADNGVSLLTVKVRVMPSSWFLLLRFWLRVD 215 (298)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~t~~~I~~~kL~~~dpILFy~ev~LfEDEL~DnG~s~lsVKiRVMp~~fflL~RffLRVD 215 (298)
....+++|+++||+++|+++||||||+|++||||||||||+|+|+|||||||+|||||+|||||||
T Consensus 81 --------------~~~~~~~t~~~I~~~~L~~~dpIlFy~ev~LfEDEL~DnGis~lsVKiRVMp~~~flL~RffLRVD 146 (182)
T PF04176_consen 81 --------------PSPEWEPTDERIPLEKLKRRDPILFYDEVILFEDELADNGISILSVKIRVMPSCFFLLLRFFLRVD 146 (182)
T ss_pred --------------cCcccCCCccccCHHHhCCCCceeehhheeeehhhcCCCceEEEEEEEEECCceeeeeeeeeEEEC
Confidence 236789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeeeeEEeeecCCCCCeEEeeecchhhhHHHHHh
Q 022343 216 GVLMRLRDTRMHCVFSDSGNPVILRENCWREATVQALAA 254 (298)
Q Consensus 216 ~VlvRi~DTRiyheF~~~~~~~viRE~~~rE~~~~~l~~ 254 (298)
||+|||+|||+||+|+ +++|||||+.||++|++|++
T Consensus 147 ~Vl~Ri~DTRiy~~f~---~~~viRE~~~rE~~~~~l~~ 182 (182)
T PF04176_consen 147 GVLVRIRDTRIYHEFG---SNYVIREYTWREATYDDLKK 182 (182)
T ss_pred CEEEEEEEEEEEEECC---CCeEEEEEEeeeccHHHhhC
Confidence 9999999999999999 57999999999999999963
No 3
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=38.63 E-value=1.1e+02 Score=26.05 Aligned_cols=64 Identities=25% Similarity=0.254 Sum_probs=41.8
Q ss_pred CCceeeceeeeeeccccCCCce----EEEEEEEEEeCC-c-hheeeeeeEEee--ceE--EEEeeeeEEeeecCCCCCeE
Q 022343 169 KEPILFYDEVVLYEDELADNGV----SLLTVKVRVMPS-S-WFLLLRFWLRVD--GVL--MRLRDTRMHCVFSDSGNPVI 238 (298)
Q Consensus 169 ~dpILFy~ev~LfEDEL~DnG~----s~lsVKiRVMp~-~-fflL~RffLRVD--~Vl--vRi~DTRiyheF~~~~~~~v 238 (298)
.+-|.|| ||.-|.-++. .+++=+||++.. . .-.=.|.|--+| |+. ++.+.||+|+.++. +..+
T Consensus 47 ~~~~~~Y-----F~~~l~~~~~~~~~tI~~p~V~~lg~~~Ai~~gvy~f~~~d~~G~~~~~~areT~v~~~~~g--~W~i 119 (128)
T PF08332_consen 47 LEFHKFY-----FDHFLAKKPQGVNTTILNPHVRLLGDNAAIDAGVYTFQFVDKDGVPRTVQARETRVWQKRDG--KWKI 119 (128)
T ss_dssp CHHHHHH-----HHHTGTTTSSCEEEEEEEEEEEEESTTEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEEETT--EEEE
T ss_pred hHHHHHH-----HhcccccCCCceeeEecCCeEEEcCCCEEEEeeEEEEEeecCCCCeeeEEEeEEEEEEEeCC--eEEE
Confidence 3556666 5555655443 468889999877 2 233455666665 554 79999999999973 3444
Q ss_pred E
Q 022343 239 L 239 (298)
Q Consensus 239 i 239 (298)
+
T Consensus 120 v 120 (128)
T PF08332_consen 120 V 120 (128)
T ss_dssp E
T ss_pred E
Confidence 4
No 4
>cd00914 PCD_DCoH_subfamily_b PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon
Probab=27.28 E-value=98 Score=23.59 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=19.5
Q ss_pred HHHHHHHcCCCCCCceeeCCcEEEEE
Q 022343 45 VERWEQKLETNHLPEMVFGESCLVLK 70 (298)
Q Consensus 45 ~d~~~~~L~~~~lPEMvFg~N~L~i~ 70 (298)
+..+.++.+ |-|+|.++-|+|+|.
T Consensus 30 va~~ae~~~--HHPdi~~~~~~V~v~ 53 (76)
T cd00914 30 VALEAEKMN--HHPEWFNVYNKVDIT 53 (76)
T ss_pred HHHHHHHhC--CCCCEEEeccEEEEE
Confidence 456667777 789999999999984
No 5
>cd00488 PCD_DCoH PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon cancer carc
Probab=22.47 E-value=1.3e+02 Score=22.66 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCCCCceeeCCcEEEEE
Q 022343 45 VERWEQKLETNHLPEMVFGESCLVLK 70 (298)
Q Consensus 45 ~d~~~~~L~~~~lPEMvFg~N~L~i~ 70 (298)
+..+.++.+ |-|++.++.|++.|+
T Consensus 29 va~~ae~~~--HHP~i~~~~~~V~v~ 52 (75)
T cd00488 29 VAELAEALN--HHPDISNVYNKVTVT 52 (75)
T ss_pred HHHHHHHcC--CCCCEEEeeeEEEEE
Confidence 445667776 789999999999984
No 6
>cd00913 PCD_DCoH_subfamily_a PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein).
Probab=20.93 E-value=1.5e+02 Score=22.53 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=19.2
Q ss_pred HHHHHHHcCCCCCCceeeCCcEEEEE
Q 022343 45 VERWEQKLETNHLPEMVFGESCLVLK 70 (298)
Q Consensus 45 ~d~~~~~L~~~~lPEMvFg~N~L~i~ 70 (298)
+..+.++.+ |-|+|.++.|+|+|+
T Consensus 30 va~~ae~~~--HHP~i~~~~~~V~v~ 53 (76)
T cd00913 30 VGEIAEAEG--HHPDLSLGWGRVRVT 53 (76)
T ss_pred HHHHHHHcC--CCCCEEEeccEEEEE
Confidence 456667776 789999999999874
No 7
>PF05820 DUF845: Baculovirus protein of unknown function (DUF845); InterPro: IPR008563 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf81; it is a family of uncharacterised viral proteins.
Probab=19.31 E-value=1.1e+02 Score=26.08 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=23.5
Q ss_pred CCceEEE-EEEEEEeCCchheeeeeeEEeec
Q 022343 187 DNGVSLL-TVKVRVMPSSWFLLLRFWLRVDG 216 (298)
Q Consensus 187 DnG~s~l-sVKiRVMp~~fflL~RffLRVD~ 216 (298)
++.+-+. -.|+||--+|..+|..||.+|+-
T Consensus 24 ~~~~NvIkickv~V~Kt~gtlLAHYyA~I~~ 54 (119)
T PF05820_consen 24 SNNPNVIKICKVRVKKTGGTLLAHYYAQIDI 54 (119)
T ss_pred cCCCcEEEEEEEEEeecccchhhheeEEEEc
Confidence 3444444 45889999999999999999985
No 8
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=16.64 E-value=63 Score=23.88 Aligned_cols=31 Identities=35% Similarity=0.399 Sum_probs=25.6
Q ss_pred eeeeeeccccCCCce-EEEEEEEEEeCCchhe
Q 022343 176 DEVVLYEDELADNGV-SLLTVKVRVMPSSWFL 206 (298)
Q Consensus 176 ~ev~LfEDEL~DnG~-s~lsVKiRVMp~~ffl 206 (298)
-.+.|=-+-|..-|+ .=-.|+|+||+.|+-+
T Consensus 24 p~i~L~G~WL~~aGF~~G~~v~V~v~~g~lvI 55 (57)
T PF08845_consen 24 PEIRLKGKWLEEAGFTIGDPVKVRVMPGCLVI 55 (57)
T ss_pred ceEEEchhhhHHhCCCCCCEEEEEEECCEEEE
Confidence 567788888888998 5688999999999754
No 9
>PF09346 SMI1_KNR4: SMI1 / KNR4 family (SUKH-1); InterPro: IPR018958 Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation [, ]. Yeast members of this family are involved in the regulation of cell wall assembly. Saccharomyces cerevisiae (Baker's yeast) protein KNR4 (SMI1) has a regulatory role in chitin deposition and in cell wall assembly []. It was originally identified as a regulator of chitin synthase expression (acting as a repressor) [] and of 1,3-beta-glucan synthase levels []. It was shown to localise in patches at presumptive bud sites in unbudded cells and at the incipient bud site during bud emergence []. KNR4 is believed to connect the PKC1-SLT2 MAPK pathway with cell proliferation. It has been shown to interact with BCK2, a gene involved in cell cycle progression in S. cerevisiae (forming a complex) to allow PKC1 to coordinate the cell cycle (cell proliferation) with cell wall integrity [, ]. PKC1 plays an essential role in cell wall integrity and cell proliferation through a bifurcated PKC1/mitogen-activated protein (MAP) kinase pathway. KNR4 also interacts with the tyrosine-tRNA synthetase protein encoded by TYS1 and is involved in sporulation process []. Note: previously reported evidence that KNR4 may interact with nuclear matrix-association region [] may be due to an artefact [].; PDB: 3D5P_A 2ICG_A.
Probab=14.65 E-value=90 Score=24.06 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=12.4
Q ss_pred cCchHHHHHHHHcCCCCCCc
Q 022343 40 LNSSSVERWEQKLETNHLPE 59 (298)
Q Consensus 40 l~s~e~d~~~~~L~~~~lPE 59 (298)
++.+++.++|++||+ .||+
T Consensus 2 ~t~~~I~~~E~~lg~-~LP~ 20 (130)
T PF09346_consen 2 ATEEEIQELEEKLGV-RLPD 20 (130)
T ss_dssp --HHHHHHHHHHHTS----H
T ss_pred CCHHHHHHHHHHhCC-CCcH
Confidence 356789999999997 8885
No 10
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=14.24 E-value=1.5e+02 Score=25.12 Aligned_cols=41 Identities=20% Similarity=0.408 Sum_probs=23.0
Q ss_pred ceeeCCcE---EEEEEcCCCceEEEchhhhhhccccCCCCCeee
Q 022343 59 EMVFGESC---LVLKHVESGTKIHFNAFDALSGWKQESLPPVEV 99 (298)
Q Consensus 59 EMvFg~N~---L~i~h~~sg~~i~Fna~DAL~~v~~~~~~~vkV 99 (298)
++.|.++. |.|-|..+||-|...|++.|-.=+...+..|.|
T Consensus 64 ~lty~g~si~vlaID~a~~gfnis~~A~n~LT~g~a~~lG~V~a 107 (119)
T PF07249_consen 64 KLTYNGRSIYVLAIDHAGGGFNISLDAMNDLTNGQAVELGRVDA 107 (119)
T ss_dssp EEEETTEEEEEEEEEE-SSSEEE-HHHHHHHHTS-CCCC-EEE-
T ss_pred EEEECCeEEEEEEEecCCCcccchHHHHHHhcCCcccceeEEEE
Confidence 34444443 567778789999888888887644333333443
Done!