Query 022343
Match_columns 298
No_of_seqs 111 out of 219
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 03:57:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022343.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022343hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ke7_A Putative ketosteroid is 67.9 33 0.0011 27.7 9.1 54 189-243 74-127 (134)
2 2f86_B Hypothetical protein K1 58.0 59 0.002 26.2 8.9 54 188-243 71-130 (143)
3 3f7s_A Uncharacterized NTF2-li 38.8 96 0.0033 23.6 7.0 52 191-244 72-126 (142)
4 2jni_A Arenicin-2; peptide, an 32.2 34 0.0012 20.4 2.4 15 210-224 6-20 (26)
5 3plv_C 66 kDa U4/U6.U5 small n 23.0 70 0.0024 18.5 2.6 19 40-58 2-20 (21)
6 3fsd_A NTF2-like protein of un 17.1 3.4E+02 0.012 20.5 7.3 41 191-231 73-118 (134)
7 3soa_A Calcium/calmodulin-depe 16.0 3E+02 0.01 25.7 7.0 43 190-232 382-430 (444)
8 1jsg_A Oncogene product P14TCL 11.5 2E+02 0.0068 23.3 3.5 29 171-202 16-44 (114)
9 1usm_A DCOH, hepatocyte nuclea 11.1 2.2E+02 0.0075 20.8 3.5 25 45-71 31-55 (80)
10 3qva_A Transthyretin-like prot 9.8 76 0.0026 25.7 0.5 13 76-88 63-75 (116)
No 1
>3ke7_A Putative ketosteroid isomerase; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE BCN; 1.45A {Parabacteroides distasonis atcc 8503}
Probab=67.90 E-value=33 Score=27.70 Aligned_cols=54 Identities=11% Similarity=0.058 Sum_probs=37.8
Q ss_pred ceEEEEEEEEEeCCchheeeeeeEEeeceEEEEeeeeEEeeecCCCCCeEEeeec
Q 022343 189 GVSLLTVKVRVMPSSWFLLLRFWLRVDGVLMRLRDTRMHCVFSDSGNPVILRENC 243 (298)
Q Consensus 189 G~s~lsVKiRVMp~~fflL~RffLRVD~VlvRi~DTRiyheF~~~~~~~viRE~~ 243 (298)
...+++.+|.|..+..++-...-..+++--.+++.||+|+..++ |...|+.+..
T Consensus 74 ~~ei~~p~V~v~gD~A~~~y~l~~~~~~~~~~~r~T~V~~r~~d-G~W~ivH~H~ 127 (134)
T 3ke7_A 74 HFDMIRPVVQVAQNIAVLTFNLDSYLSDKVIKWNCTEVYRRNPD-NQWKIIQTHW 127 (134)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECTT-SBEEEEEEEE
T ss_pred eEEEeCCeEEEeCceEEEEEEEEEeeCCCcEEEEEEEEEEEcCC-CcEEEEEEee
Confidence 46688888888877655422222445666789999999999832 4678887764
No 2
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=58.05 E-value=59 Score=26.18 Aligned_cols=54 Identities=11% Similarity=0.146 Sum_probs=37.1
Q ss_pred CceEEEEEEEEEeC-Cchhee-eeeeEEe--ec--eEEEEeeeeEEeeecCCCCCeEEeeec
Q 022343 188 NGVSLLTVKVRVMP-SSWFLL-LRFWLRV--DG--VLMRLRDTRMHCVFSDSGNPVILRENC 243 (298)
Q Consensus 188 nG~s~lsVKiRVMp-~~fflL-~RffLRV--D~--VlvRi~DTRiyheF~~~~~~~viRE~~ 243 (298)
-.+..++.+|++.. +.-++. .|..... || +-.+.+.||+|...+ |...|+=+..
T Consensus 71 ~~~~~~~~~V~~~g~d~Av~~y~~~~~~~~~~G~~~~~~~r~T~V~~k~~--g~WkivH~H~ 130 (143)
T 2f86_B 71 VHTTMLNPNVHIIGEDAACVAYVKLTQFLDRNGEAHTRQSQESRVWSKKQ--GRWVCVHVHR 130 (143)
T ss_dssp CEEEEEEEEEEEETTTEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEET--TEEEEEEEEE
T ss_pred ceeEEEcceEEEeCCCEEEEEEEeeeeeccCCCCeeeEEEEEEEEEEEeC--CcEEEEEEeE
Confidence 34588999999998 654443 4444444 46 445799999999986 3567776643
No 3
>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}
Probab=38.78 E-value=96 Score=23.63 Aligned_cols=52 Identities=12% Similarity=-0.091 Sum_probs=35.5
Q ss_pred EEEEEEEEEeCCchheeeeeeEEe---eceEEEEeeeeEEeeecCCCCCeEEeeecc
Q 022343 191 SLLTVKVRVMPSSWFLLLRFWLRV---DGVLMRLRDTRMHCVFSDSGNPVILRENCW 244 (298)
Q Consensus 191 s~lsVKiRVMp~~fflL~RffLRV---D~VlvRi~DTRiyheF~~~~~~~viRE~~~ 244 (298)
...+++|++-++.-++-.+..++. |+...+.+-|.+|+.-+ |...|+.+...
T Consensus 72 ~~~~~~v~~~gd~A~~~~~~~~~~~~~~g~~~~~r~T~v~~r~~--g~W~ivh~H~S 126 (142)
T 3f7s_A 72 ELAQLTVHAAGDLALAHWLNRCGPGDDESQCGFMRATVGYRRQG--GQWQVIHEHWS 126 (142)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEESSCGGGCEEEEEEEEEEEET--TEEEEEEEEEE
T ss_pred EEeeeEEEEcCCEEEEEEEEEEeeecCCCcceeeEEEEEEEEeC--CEEEEEEEeec
Confidence 445666777777666655544444 66788899999999865 35777776543
No 4
>2jni_A Arenicin-2; peptide, antimicrobial, beta-sheet, antimicrobial protein; NMR {Arenicola marina} PDB: 2l8x_A 2jsb_A
Probab=32.18 E-value=34 Score=20.44 Aligned_cols=15 Identities=40% Similarity=0.784 Sum_probs=12.2
Q ss_pred eeEEeeceEEEEeee
Q 022343 210 FWLRVDGVLMRLRDT 224 (298)
Q Consensus 210 ffLRVD~VlvRi~DT 224 (298)
-|+|+-|||+|-+-+
T Consensus 6 ayvrirgvlvryrrc 20 (26)
T 2jni_A 6 AYVRIRGVLVRYRRC 20 (26)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred EEEEEEEEEEEEEEe
Confidence 478999999998743
No 5
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}
Probab=22.95 E-value=70 Score=18.54 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=15.1
Q ss_pred cCchHHHHHHHHcCCCCCC
Q 022343 40 LNSSSVERWEQKLETNHLP 58 (298)
Q Consensus 40 l~s~e~d~~~~~L~~~~lP 58 (298)
++-+|...+...||+-|+|
T Consensus 2 ~siEEtnk~r~~lGLkplp 20 (21)
T 3plv_C 2 LSIEETNELRASLGLKLIP 20 (26)
T ss_dssp CCHHHHHHHHHHTTCCCCC
T ss_pred ccHHHHHHHHHHcCCCCCC
Confidence 4556778889999998877
No 6
>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0
Probab=17.08 E-value=3.4e+02 Score=20.48 Aligned_cols=41 Identities=24% Similarity=0.154 Sum_probs=28.1
Q ss_pred EEEEEEEEEeCC-chheeeeeeEEe--eceE--EEEeeeeEEeeec
Q 022343 191 SLLTVKVRVMPS-SWFLLLRFWLRV--DGVL--MRLRDTRMHCVFS 231 (298)
Q Consensus 191 s~lsVKiRVMp~-~fflL~RffLRV--D~Vl--vRi~DTRiyheF~ 231 (298)
....++||+..+ +-++..|+-+.. +|.- .+.+-|++|+..+
T Consensus 73 ~~~~~~v~~~g~d~Avv~~~~~~~~~~~g~~~~~~~~~t~vw~k~~ 118 (134)
T 3fsd_A 73 DLSDAVVRAAGEDGRVVVVRAVTAGVYDGEAFTETLRFTRIWRRTQ 118 (134)
T ss_dssp EEEEEEEEESSTTEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEET
T ss_pred EEeccEEEEeCCCEEEEEEEEEEEEEeCCcEEEEEEEEEEEEEECC
Confidence 345678888877 666666655443 4543 4678899999876
No 7
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=16.05 E-value=3e+02 Score=25.69 Aligned_cols=43 Identities=16% Similarity=0.239 Sum_probs=31.2
Q ss_pred eEEEEEEEEEeCCc--hheeeeeeEEee--c--eEEEEeeeeEEeeecC
Q 022343 190 VSLLTVKVRVMPSS--WFLLLRFWLRVD--G--VLMRLRDTRMHCVFSD 232 (298)
Q Consensus 190 ~s~lsVKiRVMp~~--fflL~RffLRVD--~--VlvRi~DTRiyheF~~ 232 (298)
..+++=+|+++.+- .+--.|.-.++| | ...+..+|||+|.++.
T Consensus 382 ~~~~~p~v~~~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 430 (444)
T 3soa_A 382 TTILNPHIHLMGDESACIAYIRITQYLDAGGIPRTAQSEETRVWHRRDG 430 (444)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETT
T ss_pred EeecCCceEEecCcceeeeeeeeeeeeccCCCccccchhhheeeeecCC
Confidence 37899999999753 333334444455 5 7899999999999973
No 8
>1jsg_A Oncogene product P14TCL1; proto-oncogene, CL1 gene, T cell leukemia, oncoprotein, microsome; 2.50A {Homo sapiens} SCOP: b.63.1.1
Probab=11.53 E-value=2e+02 Score=23.27 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=24.1
Q ss_pred ceeeceeeeeeccccCCCceEEEEEEEEEeCC
Q 022343 171 PILFYDEVVLYEDELADNGVSLLTVKVRVMPS 202 (298)
Q Consensus 171 pILFy~ev~LfEDEL~DnG~s~lsVKiRVMp~ 202 (298)
.-||..+--.|||| ||=+-+.|+|+.-|+
T Consensus 16 ~~Lw~~~~gvYeDE---~~RtWv~v~ve~~~~ 44 (114)
T 1jsg_A 16 DRLWAWEKFVYLDE---KQHAWLPLTIEIKDR 44 (114)
T ss_dssp SEEEEEETTEEEET---TCCEEEEEEEEEETT
T ss_pred CEEEEecCCeEEcC---CCcEEEEEEEEecCC
Confidence 37999999999999 777788888888666
No 9
>1usm_A DCOH, hepatocyte nuclear factor 1-alpha; transcriptional stimulator, dimerization cofactor, dehydratase, 4A-carbinolamine dehydratase; 1.2A {Thermus thermophilus} SCOP: d.74.1.1 PDB: 1uso_A
Probab=11.13 E-value=2.2e+02 Score=20.83 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCCCCceeeCCcEEEEEE
Q 022343 45 VERWEQKLETNHLPEMVFGESCLVLKH 71 (298)
Q Consensus 45 ~d~~~~~L~~~~lPEMvFg~N~L~i~h 71 (298)
+..+.++.+ |-||+.++-|.|.|+-
T Consensus 31 Va~~Ae~~~--HHPdi~~~y~~V~v~l 55 (80)
T 1usm_A 31 VGALAEREN--HHPRLTVEWGRVTVEW 55 (80)
T ss_dssp HHHHHHHHT--CCCEEEEETTEEEEEE
T ss_pred HHHHHHHhC--CCCcEEEeCCEEEEEE
Confidence 345667777 6799999999998854
No 10
>3qva_A Transthyretin-like protein; transthyretin-related protein, 5-hydroxyisourate hydrolase,; HET: PO4; 1.75A {Klebsiella pneumoniae subsp}
Probab=9.81 E-value=76 Score=25.65 Aligned_cols=13 Identities=0% Similarity=-0.253 Sum_probs=9.0
Q ss_pred ceEEEchhhhhhc
Q 022343 76 TKIHFNAFDALSG 88 (298)
Q Consensus 76 ~~i~Fna~DAL~~ 88 (298)
+.|.|.+-+=.+.
T Consensus 63 Y~L~F~tg~Yf~~ 75 (116)
T 3qva_A 63 YCLTAETGAWFAR 75 (116)
T ss_dssp EEEEECHHHHHHH
T ss_pred EEEEEeHHHHHhh
Confidence 6788887665553
Done!