Query 022343
Match_columns 298
No_of_seqs 111 out of 219
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 03:57:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022343.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022343hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1usma_ d.74.1.1 (A:) Pterin-4 16.2 60 0.0044 22.2 3.5 25 45-71 31-55 (80)
2 d1b77a2 d.131.1.2 (A:111-228) 13.2 29 0.0021 26.1 1.0 24 40-63 8-31 (118)
3 d1orua_ b.58.1.2 (A:) Hypothet 12.4 46 0.0034 26.1 2.2 34 37-71 66-99 (182)
4 d1dcpa_ d.74.1.1 (A:) Pterin-4 8.8 1.3E+02 0.0098 21.0 3.5 25 45-71 48-72 (99)
5 d1ru0a_ d.74.1.1 (A:) DcoH-lik 8.6 1.4E+02 0.01 20.9 3.5 25 45-71 50-74 (100)
6 d1lvaa3 a.4.5.35 (A:511-574) C 8.5 50 0.0036 21.7 0.8 14 215-228 50-63 (64)
7 d1zhva1 d.58.18.8 (A:2-61) Hyp 8.1 84 0.0061 20.8 1.9 35 56-90 23-57 (60)
8 d2fb1a2 d.113.1.6 (A:3-149) Hy 7.0 1.3E+02 0.0093 22.0 2.8 24 207-230 6-29 (147)
9 d2icga1 d.369.1.1 (A:1-158) Un 6.8 98 0.0071 22.8 1.9 21 39-60 25-45 (158)
10 d1u8sa2 d.58.18.5 (A:88-180) p 6.8 1.1E+02 0.0083 20.8 2.2 31 185-215 27-59 (93)
No 1
>d1usma_ d.74.1.1 (A:) Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) {Thermus thermophilus [TaxId: 274]}
Probab=16.19 E-value=60 Score=22.23 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=20.0
Q ss_pred HHHHHHHcCCCCCCceeeCCcEEEEEE
Q 022343 45 VERWEQKLETNHLPEMVFGESCLVLKH 71 (298)
Q Consensus 45 ~d~~~~~L~~~~lPEMvFg~N~L~i~h 71 (298)
+-.+.++++ |-|+|.++-|.|+|+-
T Consensus 31 va~~ae~~~--HHPdi~~~~~~V~i~l 55 (80)
T d1usma_ 31 VGALAEREN--HHPRLTVEWGRVTVEW 55 (80)
T ss_dssp HHHHHHHHT--CCCEEEEETTEEEEEE
T ss_pred HHHHHHHhc--CCCeEEEEcCeEEEEE
Confidence 345667777 7899999999999853
No 2
>d1b77a2 d.131.1.2 (A:111-228) gp45 sliding clamp {Bacteriophage RB69 [TaxId: 12353]}
Probab=13.16 E-value=29 Score=26.09 Aligned_cols=24 Identities=0% Similarity=0.094 Sum_probs=19.7
Q ss_pred cCchHHHHHHHHcCCCCCCceeeC
Q 022343 40 LNSSSVERWEQKLETNHLPEMVFG 63 (298)
Q Consensus 40 l~s~e~d~~~~~L~~~~lPEMvFg 63 (298)
|+++++.++.+.-..+.+||++|-
T Consensus 8 L~~ddl~~l~kAa~vl~lpdl~~~ 31 (118)
T d1b77a2 8 IKAEDLQQLLRVSRGLQIDTIAIT 31 (118)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eCHHHHHHHHHHHHhcCCCcEEEE
Confidence 578888888887777789999985
No 3
>d1orua_ b.58.1.2 (A:) Hypothetical protein YuaD {Bacillus subtilis [TaxId: 1423]}
Probab=12.35 E-value=46 Score=26.11 Aligned_cols=34 Identities=12% Similarity=0.151 Sum_probs=27.8
Q ss_pred cCccCchHHHHHHHHcCCCCCCceeeCCcEEEEEE
Q 022343 37 RSILNSSSVERWEQKLETNHLPEMVFGESCLVLKH 71 (298)
Q Consensus 37 ~pIl~s~e~d~~~~~L~~~~lPEMvFg~N~L~i~h 71 (298)
=.|++++.++++++.++..+++--.||.| |.++-
T Consensus 66 Vslis~E~l~~~~~~lg~~~l~pg~~geN-l~v~G 99 (182)
T d1orua_ 66 ISIVSIEECNEIALKMGVPRILPEWLGAN-VAVSG 99 (182)
T ss_dssp EEEEEHHHHHHHHHHHTCSCCCGGGGTCS-EEEES
T ss_pred EEEecHHHHHHHHHHcCCCcCCcccccce-EEEeC
Confidence 34889999999999999866888899999 45553
No 4
>d1dcpa_ d.74.1.1 (A:) Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.80 E-value=1.3e+02 Score=20.97 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=20.0
Q ss_pred HHHHHHHcCCCCCCceeeCCcEEEEEE
Q 022343 45 VERWEQKLETNHLPEMVFGESCLVLKH 71 (298)
Q Consensus 45 ~d~~~~~L~~~~lPEMvFg~N~L~i~h 71 (298)
+..+.++++ |-|++.++-|.|.|+-
T Consensus 48 Va~~ae~~~--HHP~i~~~y~~V~i~l 72 (99)
T d1dcpa_ 48 VALQAEKLD--HHPEWFNVYNKVHITL 72 (99)
T ss_dssp HHHHHHHHT--CCCEEEEETTEEEEEE
T ss_pred HHHHHHHhC--CCccEEEeeeEEEEEE
Confidence 345667777 7899999999999853
No 5
>d1ru0a_ d.74.1.1 (A:) DcoH-like protein DCoH2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.60 E-value=1.4e+02 Score=20.94 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=19.6
Q ss_pred HHHHHHHcCCCCCCceeeCCcEEEEEE
Q 022343 45 VERWEQKLETNHLPEMVFGESCLVLKH 71 (298)
Q Consensus 45 ~d~~~~~L~~~~lPEMvFg~N~L~i~h 71 (298)
+-.+.+..+ |-|+++++-|.|+|+-
T Consensus 50 va~~ae~~~--HHPdi~~~y~~V~v~l 74 (100)
T d1ru0a_ 50 VALQAEKMN--HHPEWFNVYNKVQITL 74 (100)
T ss_dssp HHHHHHHHT--CCCEEEEETTEEEEEE
T ss_pred HHHHHHHhC--CCCeEEEeccEEEEEE
Confidence 345666776 8899999999999853
No 6
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=8.52 E-value=50 Score=21.71 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=10.4
Q ss_pred eceEEEEeeeeEEe
Q 022343 215 DGVLMRLRDTRMHC 228 (298)
Q Consensus 215 D~VlvRi~DTRiyh 228 (298)
.|.|+||.+-|+||
T Consensus 50 ~G~lvkI~~d~yfh 63 (64)
T d1lvaa3 50 EGVLVKINDEFYWH 63 (64)
T ss_dssp TTSEEESSSSBEEE
T ss_pred CCCEEEeccccccc
Confidence 36777777777777
No 7
>d1zhva1 d.58.18.8 (A:2-61) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=8.08 E-value=84 Score=20.82 Aligned_cols=35 Identities=9% Similarity=0.050 Sum_probs=29.2
Q ss_pred CCCceeeCCcEEEEEEcCCCceEEEchhhhhhccc
Q 022343 56 HLPEMVFGESCLVLKHVESGTKIHFNAFDALSGWK 90 (298)
Q Consensus 56 ~lPEMvFg~N~L~i~h~~sg~~i~Fna~DAL~~v~ 90 (298)
++|+-+|+..++.|.....+.+|---+-.+...|+
T Consensus 23 ~iP~w~~~~~f~sItrT~dELSvVC~~~~vP~~v~ 57 (60)
T d1zhva1 23 AIPAWADGGGFVSITRTDDELSIVCLIDRIPQDVR 57 (60)
T ss_dssp CCCTTTSSSSCCEEEECSSCEEEEEEGGGSCTTSE
T ss_pred CCCccccCCCEEEEEecCCceEEEECcccCccccc
Confidence 78999999999999999888888877766666554
No 8
>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=7.05 E-value=1.3e+02 Score=22.04 Aligned_cols=24 Identities=13% Similarity=0.415 Sum_probs=18.8
Q ss_pred eeeeeEEeeceEEEEeeeeEEeee
Q 022343 207 LLRFWLRVDGVLMRLRDTRMHCVF 230 (298)
Q Consensus 207 L~RffLRVD~VlvRi~DTRiyheF 230 (298)
.-|+.+-||-|++|+.|.+...-.
T Consensus 6 ~p~~~v~Vd~Vi~~~~~~~~~vLL 29 (147)
T d2fb1a2 6 NPTFYLGIDCIIFGFNEGEISLLL 29 (147)
T ss_dssp SCCEEEEEEEEEEEEETTEEEEEE
T ss_pred CCCcceEEEEEEEEEeCCcCEEEE
Confidence 357889999999999998754433
No 9
>d2icga1 d.369.1.1 (A:1-158) Uncharacterized protein Lin2918 {Listeria innocua [TaxId: 1642]}
Probab=6.84 E-value=98 Score=22.79 Aligned_cols=21 Identities=14% Similarity=0.302 Sum_probs=17.5
Q ss_pred ccCchHHHHHHHHcCCCCCCce
Q 022343 39 ILNSSSVERWEQKLETNHLPEM 60 (298)
Q Consensus 39 Il~s~e~d~~~~~L~~~~lPEM 60 (298)
=.+.+++.++|+.||+ .||+.
T Consensus 25 ~at~E~I~~~E~~LG~-~lP~~ 45 (158)
T d2icga1 25 TGTPELIKIYQDALGN-EFPET 45 (158)
T ss_dssp CCCHHHHHHHHHHHTC-CCCHH
T ss_pred CCCHHHHHHHHHHHCC-CCCHH
Confidence 3567789999999996 89975
No 10
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}
Probab=6.82 E-value=1.1e+02 Score=20.77 Aligned_cols=31 Identities=6% Similarity=0.196 Sum_probs=20.0
Q ss_pred cCCCceEEEEEEEEEeCCch--heeeeeeEEee
Q 022343 185 LADNGVSLLTVKVRVMPSSW--FLLLRFWLRVD 215 (298)
Q Consensus 185 L~DnG~s~lsVKiRVMp~~f--flL~RffLRVD 215 (298)
|+++|+.+..+.-++.+..+ -...+|++|+.
T Consensus 27 la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~ 59 (93)
T d1u8sa2 27 FAQRQIGMASLSAQTISKDKLHSEQNQFHIAIS 59 (93)
T ss_dssp HHHTTCCEEEEEEEEEC--------CEEEEEEE
T ss_pred HHHcCCCchhhhcccccccCCcccCccEEEEEE
Confidence 67889999998888887654 34567777763
Done!