Query 022344
Match_columns 298
No_of_seqs 231 out of 1313
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 03:58:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022344.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022344hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x93_A Hypothetical protein HP 28.5 15 0.00052 24.8 0.5 30 3-32 7-38 (55)
2 2k1o_A Putative; repressor, tr 18.2 29 0.00099 24.2 0.3 29 3-31 21-51 (66)
3 2bn5_A PSI; nuclear protein, s 12.9 47 0.0016 20.4 0.2 13 151-163 2-14 (33)
4 2wp7_A PPPDE peptidase domain- 9.3 1E+02 0.0035 25.7 1.2 30 9-39 88-117 (168)
5 3h90_A Ferrous-iron efflux pum 8.5 3.5E+02 0.012 23.5 4.5 50 79-128 109-158 (283)
6 1bh9_B TAFII28; histone fold, 7.2 4E+02 0.014 19.6 3.6 47 4-58 1-47 (89)
7 2lyc_A Spindle and kinetochore 5.7 1.7E+02 0.0057 23.5 0.7 17 1-17 7-23 (130)
8 2l16_A SEC-independent protein 4.6 4.5E+02 0.015 18.9 2.4 19 172-193 6-24 (78)
9 2vhj_A Ntpase P4, P4; non- hyd 4.1 2.8E+02 0.0094 25.6 1.0 14 110-123 25-38 (331)
10 1bku_A Calcitonin; hormone, ca 4.0 6.2E+02 0.021 15.3 2.3 23 26-48 5-30 (33)
No 1
>1x93_A Hypothetical protein HP0222; JHP0208, transcription, regula METJ, MNT, PArg, COPG, REPA; NMR {Helicobacter pylori} SCOP: a.43.1.3
Probab=28.54 E-value=15 Score=24.78 Aligned_cols=30 Identities=20% Similarity=0.511 Sum_probs=22.0
Q ss_pred ccCHhhhhhhhccccccccc--chhhhhhhhh
Q 022344 3 YIGAHGVAALQRYKYSGVDN--SYLAKYVLQP 32 (298)
Q Consensus 3 yi~~~~l~~l~~ykY~~~d~--S~l~~yvl~p 32 (298)
|+|+|+-+.|++-.+.-.+. |++-+|+++-
T Consensus 7 Y~SkEey~~L~klA~eE~eSV~sfIKR~IlK~ 38 (55)
T 1x93_A 7 YFSDEQYQKLEKMANEEEESVGSYIKRYILKA 38 (55)
T ss_dssp EECHHHHHHHHHHHHHTTSCTTHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999877765543 6676666553
No 2
>2k1o_A Putative; repressor, transcriptional regulator, D binding, ribbon-helix-helix, HP0564, JHP0511, unknown funct regulation; NMR {Helicobacter pylori}
Probab=18.24 E-value=29 Score=24.23 Aligned_cols=29 Identities=21% Similarity=0.452 Sum_probs=21.2
Q ss_pred ccCHhhhhhhhccccccccc--chhhhhhhh
Q 022344 3 YIGAHGVAALQRYKYSGVDN--SYLAKYVLQ 31 (298)
Q Consensus 3 yi~~~~l~~l~~ykY~~~d~--S~l~~yvl~ 31 (298)
|+|+|+-+.|++-.+.-.+. |++-+||++
T Consensus 21 Y~SkEey~~L~klA~eE~eSV~sfIKR~IlK 51 (66)
T 2k1o_A 21 YLSKEEHDVLRRLADEEVESVNSFVKRHILK 51 (66)
T ss_dssp EEEHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999888877766553 666666554
No 3
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=12.94 E-value=47 Score=20.45 Aligned_cols=13 Identities=23% Similarity=0.818 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhc
Q 022344 151 PFFGATWEHYFTN 163 (298)
Q Consensus 151 ~fy~s~We~y~tg 163 (298)
+.|.++|-||+..
T Consensus 2 ~DYSaQW~eYYrs 14 (33)
T 2bn5_A 2 ADYSAQWAEYYRS 14 (33)
T ss_dssp CTTHHHHHHHHHH
T ss_pred CchHHHHHHHHHH
Confidence 3588999999886
No 4
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=9.33 E-value=1e+02 Score=25.75 Aligned_cols=30 Identities=10% Similarity=0.225 Sum_probs=22.4
Q ss_pred hhhhhcccccccccchhhhhhhhhHHHHHHh
Q 022344 9 VAALQRYKYSGVDNSYLAKYVLQPFWSRFVN 39 (298)
Q Consensus 9 l~~l~~ykY~~~d~S~l~~yvl~p~~~~~v~ 39 (298)
++.|++-+|.+....++++.. +.|.+.+++
T Consensus 88 l~~l~~~~~~g~~Y~Ll~~NC-NhFs~~l~~ 117 (168)
T 2wp7_A 88 LSSLGESLFRGEAYNLFEHNC-NTFSNEVAQ 117 (168)
T ss_dssp HHHHHTTTCSGGGCBTTTBSH-HHHHHHHHH
T ss_pred HHHhhhccCCcccCchhhhcc-chhHHHHHH
Confidence 556666669999999998885 667776654
No 5
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=8.49 E-value=3.5e+02 Score=23.50 Aligned_cols=50 Identities=12% Similarity=0.004 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHhcCCCCcchhhhhhhhhHHHHHHHH
Q 022344 79 WVHFAHGLLLFLYQTFDAVDGKQARRTNSSSPLGELFDHGCDALACAFEA 128 (298)
Q Consensus 79 w~~~~~~~~~f~~~~lD~~DG~~ARrt~~sSplG~lfDh~~D~~~~~~~~ 128 (298)
|....+.+.+.+...+=-.-.+.+||+++..-.++..|+..|.++.....
T Consensus 109 ~~l~v~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~vl 158 (283)
T 3h90_A 109 VGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAIL 158 (283)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333333334567788887777889999999998765433
No 6
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=7.20 E-value=4e+02 Score=19.63 Aligned_cols=47 Identities=9% Similarity=0.093 Sum_probs=31.6
Q ss_pred cCHhhhhhhhcccccccccchhhhhhhhhHHHHHHhhCCCCCCccHHHHHHHHHH
Q 022344 4 IGAHGVAALQRYKYSGVDNSYLAKYVLQPFWSRFVNFFPLWMPPNMITLTGFIFL 58 (298)
Q Consensus 4 i~~~~l~~l~~ykY~~~d~S~l~~yvl~p~~~~~v~~~P~~vaPN~ITl~g~~~~ 58 (298)
.|+||+++-+.|+-++-.++-+ |.+.+.+. -..+++|++..++.+.=
T Consensus 1 ft~eQ~~Rye~~Rrs~f~k~~v-----Krl~~~~~---~~~v~~~v~i~v~glaK 47 (89)
T 1bh9_B 1 FSEEQLNRYEMYRRSAFPKAAI-----KRLIQSIT---GTSVSQNVVIAMSGISK 47 (89)
T ss_dssp CCHHHHHHHHHHHHCCCCHHHH-----HHHHHHHH---SSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHH-----HHHHHHHc---CCCCCccHHHHHHHHHH
Confidence 4789999999998876665544 44434443 45788898877665543
No 7
>2lyc_A Spindle and kinetochore-associated protein 1 HOMO; SKA1, microtubule, SKA1-MTBD, protein binding; NMR {Caenorhabditis elegans}
Probab=5.72 E-value=1.7e+02 Score=23.49 Aligned_cols=17 Identities=12% Similarity=0.303 Sum_probs=13.0
Q ss_pred CCccCHhhhhhhhcccc
Q 022344 1 MGYIGAHGVAALQRYKY 17 (298)
Q Consensus 1 m~yi~~~~l~~l~~ykY 17 (298)
|.|||+|+.+.+.+|--
T Consensus 7 ~~~IT~eEF~sIPkYmr 23 (130)
T 2lyc_A 7 VPQITDEEFKTIPKYQL 23 (130)
T ss_dssp SCCCCHHHHTTSCHHHH
T ss_pred eeeecHHHHhccCHHHH
Confidence 56888888888887654
No 8
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=4.65 E-value=4.5e+02 Score=18.92 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=12.8
Q ss_pred chhHHHHHHHHHHHHHHhcccc
Q 022344 172 GPTEGLMLIYVGHFFTAIVGAE 193 (298)
Q Consensus 172 GptE~~~~~~~~~~~t~~~G~~ 193 (298)
|++|-.++++ ++-.+|||+
T Consensus 6 g~~ElliIlv---VaLlvfGpk 24 (78)
T 2l16_A 6 GIPGLILIFV---IALIIFGPS 24 (78)
T ss_dssp CHHHHHHHHH---HHHHHSCTT
T ss_pred CHHHHHHHHH---HHhheeCcc
Confidence 7889766665 344578864
No 9
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=4.05 E-value=2.8e+02 Score=25.60 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=11.8
Q ss_pred cchhhhhhhhhHHH
Q 022344 110 PLGELFDHGCDALA 123 (298)
Q Consensus 110 plG~lfDh~~D~~~ 123 (298)
.-|.||||..|.+.
T Consensus 25 ~~~~~~~~~~~~~~ 38 (331)
T 2vhj_A 25 APGSWFDHTSGVLE 38 (331)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CCchHHHhHHhHHH
Confidence 45999999999876
No 10
>1bku_A Calcitonin; hormone, calcium-regulating hormone; NMR {Anguilla japonica} SCOP: j.6.1.1 PDB: 1byv_A* 1bzb_A* 2glh_A 1fb9_A* 2glg_A
Probab=4.04 E-value=6.2e+02 Score=15.33 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=16.0
Q ss_pred hhhhhhhHHHHHHh---hCCCCCCcc
Q 022344 26 AKYVLQPFWSRFVN---FFPLWMPPN 48 (298)
Q Consensus 26 ~~yvl~p~~~~~v~---~~P~~vaPN 48 (298)
+..+++.+++++.+ +.|+.+.|+
T Consensus 5 sTCvt~~la~~L~rs~~f~pT~vG~~ 30 (33)
T 1bku_A 5 STCVLGKLSQELHKLQTYPRTDVGAG 30 (33)
T ss_dssp HHHHHHHHHHHHHHHTTCSSSSCSCS
T ss_pred hHHHHHHHHHHHHhccccCCCCcCCC
Confidence 45677788877764 567777765
Done!