Query 022344
Match_columns 298
No_of_seqs 231 out of 1313
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 03:58:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022344.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022344hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x93a1 a.43.1.3 (A:31-73) Unc 11.8 34 0.0024 20.1 0.8 29 3-32 7-38 (43)
2 d1qr0a1 d.150.1.1 (A:1-101) 4' 9.7 36 0.0027 23.6 0.5 32 2-33 22-54 (101)
3 d2g3qa1 a.5.2.1 (A:1339-1381) 8.7 42 0.003 20.4 0.4 18 1-18 14-31 (43)
4 d1bh9b_ a.22.1.3 (B:) TAF(II)2 7.7 1.9E+02 0.014 19.8 3.7 48 4-59 1-48 (89)
5 d1qf6a1 c.51.1.1 (A:533-642) T 5.8 45 0.0033 23.3 -0.6 10 41-50 1-10 (110)
6 d1iyjb2 a.171.1.1 (B:2761-2897 5.5 63 0.0046 24.3 0.0 20 1-20 88-107 (137)
7 d1v54m_ f.23.7.1 (M:) Mitochon 5.2 67 0.0049 19.4 0.0 10 9-18 34-43 (43)
8 d1x4pa1 a.217.1.1 (A:8-60) Arg 5.2 1.6E+02 0.012 18.0 1.9 26 3-28 15-43 (53)
9 d1mo6a2 d.48.1.1 (A:270-329) R 4.6 86 0.0063 20.0 0.2 11 110-120 2-12 (60)
10 d2fbqa2 a.121.1.1 (A:81-214) T 4.6 3.4E+02 0.025 19.0 3.9 38 89-126 90-127 (134)
No 1
>d1x93a1 a.43.1.3 (A:31-73) Uncharacterized protein HP0222 {Helicobacter pylori [TaxId: 210]}
Probab=11.85 E-value=34 Score=20.12 Aligned_cols=29 Identities=24% Similarity=0.563 Sum_probs=18.2
Q ss_pred ccCHhhhhhhhcccc---cccccchhhhhhhhh
Q 022344 3 YIGAHGVAALQRYKY---SGVDNSYLAKYVLQP 32 (298)
Q Consensus 3 yi~~~~l~~l~~ykY---~~~d~S~l~~yvl~p 32 (298)
|.|+||.+.|++-.- .+++ |.+.+|+++.
T Consensus 7 yfsdeqyqklekmaneeeesvg-syikryilka 38 (43)
T d1x93a1 7 YFSDEQYQKLEKMANEEEESVG-SYIKRYILKA 38 (43)
T ss_dssp EECHHHHHHHHHHHHHTTSCTT-HHHHHHHHHH
T ss_pred EecHHHHHHHHHHhhhhHHHHH-HHHHHHHHHH
Confidence 678888887776432 2333 6666776653
No 2
>d1qr0a1 d.150.1.1 (A:1-101) 4'-Phosphopantetheinyl transferase SFP {Bacillus subtilis [TaxId: 1423]}
Probab=9.70 E-value=36 Score=23.65 Aligned_cols=32 Identities=9% Similarity=0.233 Sum_probs=21.9
Q ss_pred CccCHhhhhhhhcccccc-cccchhhhhhhhhH
Q 022344 2 GYIGAHGVAALQRYKYSG-VDNSYLAKYVLQPF 33 (298)
Q Consensus 2 ~yi~~~~l~~l~~ykY~~-~d~S~l~~yvl~p~ 33 (298)
.++++++.++.++|++.. ...+++.+.++|-.
T Consensus 22 ~~Ls~~e~~r~~r~~~~~dr~~~l~~r~llr~~ 54 (101)
T d1qr0a1 22 TFISPEKREKCRRFYHKEDAHRTLLGDVLVRSV 54 (101)
T ss_dssp TTSCHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 579999999999999854 33445555544443
No 3
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=8.71 E-value=42 Score=20.37 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=15.4
Q ss_pred CCccCHhhhhhhhccccc
Q 022344 1 MGYIGAHGVAALQRYKYS 18 (298)
Q Consensus 1 m~yi~~~~l~~l~~ykY~ 18 (298)
|||-.+++.+.|+++++.
T Consensus 14 MGF~e~~A~~AL~k~~wn 31 (43)
T d2g3qa1 14 MGFTEEEAHNALEKCNWD 31 (43)
T ss_dssp TTSCHHHHHHHHHHHTSC
T ss_pred cCCCHHHHHHHHHHcCCC
Confidence 888888889999999875
No 4
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.66 E-value=1.9e+02 Score=19.85 Aligned_cols=48 Identities=10% Similarity=0.115 Sum_probs=32.8
Q ss_pred cCHhhhhhhhcccccccccchhhhhhhhhHHHHHHhhCCCCCCccHHHHHHHHHHH
Q 022344 4 IGAHGVAALQRYKYSGVDNSYLAKYVLQPFWSRFVNFFPLWMPPNMITLTGFIFLV 59 (298)
Q Consensus 4 i~~~~l~~l~~ykY~~~d~S~l~~yvl~p~~~~~v~~~P~~vaPN~ITl~g~~~~~ 59 (298)
.|+||+++.+.|+-++-.++-+ +.+.+.+. .-.++||+++.++-+.=+
T Consensus 1 Fs~eQ~~RyE~fRRs~~~K~~v-----krl~~~~~---g~sv~~~v~i~v~giaKv 48 (89)
T d1bh9b_ 1 FSEEQLNRYEMYRRSAFPKAAI-----KRLIQSIT---GTSVSQNVVIAMSGISKV 48 (89)
T ss_dssp CCHHHHHHHHHHHHCCCCHHHH-----HHHHHHHH---SSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHHH-----HHHHHHHc---CCCCChhHHHHHHHHHHH
Confidence 3799999999998877555444 44444443 467889988776655443
No 5
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.83 E-value=45 Score=23.27 Aligned_cols=10 Identities=40% Similarity=1.268 Sum_probs=6.8
Q ss_pred CCCCCCccHH
Q 022344 41 FPLWMPPNMI 50 (298)
Q Consensus 41 ~P~~vaPN~I 50 (298)
+|.|+||.++
T Consensus 1 ~P~~laP~Qv 10 (110)
T d1qf6a1 1 FPTWLAPVQV 10 (110)
T ss_dssp CCTTTCSSCE
T ss_pred CCCCcCCceE
Confidence 4777777765
No 6
>d1iyjb2 a.171.1.1 (B:2761-2897) BRCA2 tower domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.48 E-value=63 Score=24.33 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred CCccCHhhhhhhhccccccc
Q 022344 1 MGYIGAHGVAALQRYKYSGV 20 (298)
Q Consensus 1 m~yi~~~~l~~l~~ykY~~~ 20 (298)
|.++|++|++.|.+||=+=.
T Consensus 88 e~~lS~eQl~al~~yq~~l~ 107 (137)
T d1iyjb2 88 ETCFSEEQLRALNNYRQMLS 107 (137)
T ss_dssp --------------------
T ss_pred HHHcCHHHHHHHHHHHHHHH
Confidence 56799999999999985433
No 7
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.21 E-value=67 Score=19.41 Aligned_cols=10 Identities=40% Similarity=0.504 Sum_probs=7.8
Q ss_pred hhhhhccccc
Q 022344 9 VAALQRYKYS 18 (298)
Q Consensus 9 l~~l~~ykY~ 18 (298)
|+||++||-+
T Consensus 34 LshLe~YKk~ 43 (43)
T d1v54m_ 34 LYHLDNYKKS 43 (43)
T ss_dssp HHTHHHHHTC
T ss_pred HHHHHHhccC
Confidence 7889999853
No 8
>d1x4pa1 a.217.1.1 (A:8-60) Arginine/serine-rich-splicing factor 14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.17 E-value=1.6e+02 Score=18.04 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=20.4
Q ss_pred ccCHhhhhhhhc---ccccccccchhhhh
Q 022344 3 YIGAHGVAALQR---YKYSGVDNSYLAKY 28 (298)
Q Consensus 3 yi~~~~l~~l~~---ykY~~~d~S~l~~y 28 (298)
-+|+++...+|+ |=+=+.++|+-++|
T Consensus 15 ~LspkeR~~~k~~P~yWFLsde~SlEyKY 43 (53)
T d1x4pa1 15 SLSPKERTLLKEDPAYWFLSDENSLEYKY 43 (53)
T ss_dssp CSCHHHHHHHHHSGGGCTTTCCSSSHHHH
T ss_pred CCCHHHHHHhhcCCCeEEeecccchhHHH
Confidence 467777777765 88888888998887
No 9
>d1mo6a2 d.48.1.1 (A:270-329) RecA protein, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=4.62 E-value=86 Score=20.04 Aligned_cols=11 Identities=45% Similarity=0.691 Sum_probs=5.4
Q ss_pred cchhhhhhhhh
Q 022344 110 PLGELFDHGCD 120 (298)
Q Consensus 110 plG~lfDh~~D 120 (298)
+-|+++|.++|
T Consensus 2 r~gellDla~~ 12 (60)
T d1mo6a2 2 REGSLIDMGVD 12 (60)
T ss_dssp HHHHHHHHHHT
T ss_pred chhHHHHHHHH
Confidence 34555555444
No 10
>d2fbqa2 a.121.1.1 (A:81-214) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.62 E-value=3.4e+02 Score=18.97 Aligned_cols=38 Identities=8% Similarity=0.086 Sum_probs=22.9
Q ss_pred HHHHHhhhhhHHHHHhcCCCCcchhhhhhhhhHHHHHH
Q 022344 89 FLYQTFDAVDGKQARRTNSSSPLGELFDHGCDALACAF 126 (298)
Q Consensus 89 f~~~~lD~~DG~~ARrt~~sSplG~lfDh~~D~~~~~~ 126 (298)
+...--|.++..-....++.+...++.||.++-+...+
T Consensus 90 ~~l~~~~~~~~l~~~~~~~~~d~e~~~~~Li~F~~aGl 127 (134)
T d2fbqa2 90 FSMSGIKALRAMAETDFGVNTSTEQVMHLMVPFFAAGM 127 (134)
T ss_dssp HHHHTHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcchHHHHhcccccCCCCCHHHHHHHHHHHHHHHh
Confidence 33333455555444445566778888888887765443
Done!