Query 022346
Match_columns 298
No_of_seqs 357 out of 1777
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:50:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022346.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022346hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03430 GDPMH GDP-mannose glyc 99.8 1.3E-18 2.8E-23 143.6 11.1 113 126-269 12-132 (144)
2 cd04682 Nudix_Hydrolase_23 Mem 99.8 1.5E-18 3.2E-23 138.8 11.0 115 128-273 2-118 (122)
3 PRK15434 GDP-mannose mannosyl 99.8 3E-18 6.5E-23 143.5 10.8 113 126-269 17-137 (159)
4 cd04679 Nudix_Hydrolase_20 Mem 99.8 4.5E-18 9.7E-23 136.4 11.4 112 126-269 2-115 (125)
5 cd04697 Nudix_Hydrolase_38 Mem 99.8 3.7E-18 8E-23 137.5 10.3 112 128-271 2-114 (126)
6 cd04693 Nudix_Hydrolase_34 Mem 99.8 5.9E-18 1.3E-22 136.2 10.8 116 128-274 2-118 (127)
7 cd04683 Nudix_Hydrolase_24 Mem 99.7 1.1E-17 2.3E-22 133.2 10.7 113 127-269 1-114 (120)
8 cd04680 Nudix_Hydrolase_21 Mem 99.7 1.6E-17 3.6E-22 131.7 11.4 106 128-269 2-108 (120)
9 cd03424 ADPRase_NUDT5 ADP-ribo 99.7 3.7E-17 8.1E-22 133.1 13.6 131 126-286 2-133 (137)
10 cd04691 Nudix_Hydrolase_32 Mem 99.7 1.2E-17 2.6E-22 132.8 10.4 107 129-270 3-109 (117)
11 cd04681 Nudix_Hydrolase_22 Mem 99.7 1.3E-17 2.9E-22 134.4 10.4 108 127-267 2-113 (130)
12 cd04670 Nudix_Hydrolase_12 Mem 99.7 1.8E-17 3.9E-22 133.3 10.8 110 126-269 2-113 (127)
13 PRK15393 NUDIX hydrolase YfcD; 99.7 2.3E-17 5E-22 141.1 11.7 127 126-284 37-164 (180)
14 cd04678 Nudix_Hydrolase_19 Mem 99.7 1.6E-17 3.4E-22 133.9 9.9 114 126-269 2-117 (129)
15 cd04673 Nudix_Hydrolase_15 Mem 99.7 2.3E-17 5E-22 131.2 10.5 108 127-269 1-114 (122)
16 cd04700 DR1025_like DR1025 fro 99.7 1.4E-17 3.1E-22 136.9 9.6 117 126-274 13-130 (142)
17 PRK10546 pyrimidine (deoxy)nuc 99.7 5.2E-17 1.1E-21 131.8 12.7 126 131-295 8-133 (135)
18 PRK09438 nudB dihydroneopterin 99.7 4.4E-17 9.5E-22 134.7 12.0 123 125-285 6-143 (148)
19 cd04684 Nudix_Hydrolase_25 Con 99.7 3.1E-17 6.8E-22 131.4 10.6 111 127-269 1-117 (128)
20 cd04694 Nudix_Hydrolase_35 Mem 99.7 4.8E-17 1E-21 134.0 11.9 121 127-270 2-132 (143)
21 PRK15472 nucleoside triphospha 99.7 3.4E-17 7.3E-22 134.3 10.1 112 129-269 6-125 (141)
22 cd03426 CoAse Coenzyme A pyrop 99.7 3.7E-17 8E-22 136.8 10.4 111 128-270 4-119 (157)
23 COG1051 ADP-ribose pyrophospha 99.7 6.4E-17 1.4E-21 133.6 11.5 113 125-271 9-124 (145)
24 cd03427 MTH1 MutT homolog-1 (M 99.7 9.3E-17 2E-21 130.6 11.7 116 133-284 7-124 (137)
25 PRK10776 nucleoside triphospha 99.7 1E-16 2.3E-21 128.4 11.6 113 130-278 8-120 (129)
26 TIGR02150 IPP_isom_1 isopenten 99.7 8.1E-17 1.8E-21 134.9 11.4 117 126-274 27-147 (158)
27 cd03673 Ap6A_hydrolase Diadeno 99.7 5.7E-17 1.2E-21 130.4 9.9 109 127-270 2-117 (131)
28 PRK11762 nudE adenosine nucleo 99.7 5.4E-16 1.2E-20 133.2 16.0 134 127-293 48-183 (185)
29 cd04696 Nudix_Hydrolase_37 Mem 99.7 1.4E-16 3.1E-21 127.8 11.4 107 127-269 3-114 (125)
30 cd04692 Nudix_Hydrolase_33 Mem 99.7 1.1E-16 2.4E-21 131.7 10.7 120 127-275 3-133 (144)
31 cd03429 NADH_pyrophosphatase N 99.7 1.7E-16 3.8E-21 128.7 11.4 106 129-270 3-108 (131)
32 cd03672 Dcp2p mRNA decapping e 99.7 2.5E-16 5.4E-21 130.1 12.3 134 129-296 4-143 (145)
33 cd03675 Nudix_Hydrolase_2 Cont 99.7 3.6E-16 7.9E-21 126.8 12.8 110 128-271 2-113 (134)
34 cd04671 Nudix_Hydrolase_13 Mem 99.7 1.5E-16 3.3E-21 127.7 10.3 106 129-267 3-108 (123)
35 cd03671 Ap4A_hydrolase_plant_l 99.7 5.2E-16 1.1E-20 128.3 13.6 112 126-270 3-132 (147)
36 PLN02325 nudix hydrolase 99.7 1.9E-16 4.2E-21 130.6 10.7 116 123-269 6-125 (144)
37 cd04669 Nudix_Hydrolase_11 Mem 99.7 1.7E-16 3.6E-21 127.0 9.9 109 129-269 3-114 (121)
38 cd04695 Nudix_Hydrolase_36 Mem 99.7 5.1E-16 1.1E-20 125.7 12.8 105 135-270 11-115 (131)
39 cd04677 Nudix_Hydrolase_18 Mem 99.7 2.4E-16 5.2E-21 127.2 10.0 109 126-270 7-123 (132)
40 cd04664 Nudix_Hydrolase_7 Memb 99.7 3E-16 6.5E-21 126.5 10.4 109 128-270 3-119 (129)
41 cd04699 Nudix_Hydrolase_39 Mem 99.7 2.5E-16 5.3E-21 126.3 9.7 112 127-270 2-115 (129)
42 cd02885 IPP_Isomerase Isopente 99.7 4.1E-16 8.9E-21 131.5 11.2 118 126-275 30-154 (165)
43 PRK03759 isopentenyl-diphospha 99.7 5.5E-16 1.2E-20 133.0 11.5 119 126-275 34-158 (184)
44 cd04672 Nudix_Hydrolase_14 Mem 99.7 4.6E-16 9.9E-21 124.5 10.3 107 126-270 2-113 (123)
45 PF00293 NUDIX: NUDIX domain; 99.7 1.8E-16 3.9E-21 127.4 7.6 114 126-270 2-120 (134)
46 TIGR00586 mutt mutator mutT pr 99.7 9.3E-16 2E-20 123.0 11.5 114 129-278 7-120 (128)
47 cd03674 Nudix_Hydrolase_1 Memb 99.7 9.4E-16 2E-20 125.4 11.5 111 127-269 3-123 (138)
48 cd04687 Nudix_Hydrolase_28 Mem 99.7 8.8E-16 1.9E-20 123.7 11.1 113 127-270 2-122 (128)
49 cd03425 MutT_pyrophosphohydrol 99.7 1.3E-15 2.8E-20 120.6 11.5 112 130-277 5-116 (124)
50 cd04688 Nudix_Hydrolase_29 Mem 99.7 8.2E-16 1.8E-20 123.4 10.4 111 128-269 3-118 (126)
51 cd04689 Nudix_Hydrolase_30 Mem 99.6 7.5E-16 1.6E-20 123.5 9.7 108 127-268 2-113 (125)
52 PRK00714 RNA pyrophosphohydrol 99.6 1.5E-15 3.3E-20 126.9 11.7 113 126-270 8-136 (156)
53 cd04690 Nudix_Hydrolase_31 Mem 99.6 2.1E-15 4.5E-20 119.4 11.0 103 129-269 3-110 (118)
54 cd04676 Nudix_Hydrolase_17 Mem 99.6 1.2E-15 2.5E-20 122.1 9.2 107 127-269 3-117 (129)
55 cd04667 Nudix_Hydrolase_10 Mem 99.6 2.3E-15 5E-20 118.5 10.6 98 131-269 4-101 (112)
56 cd04511 Nudix_Hydrolase_4 Memb 99.6 2.1E-15 4.5E-20 122.0 10.4 105 126-267 13-117 (130)
57 cd04685 Nudix_Hydrolase_26 Mem 99.6 3.6E-15 7.8E-20 121.4 11.1 118 128-269 2-123 (133)
58 cd04666 Nudix_Hydrolase_9 Memb 99.6 3.9E-15 8.4E-20 119.4 11.0 106 129-270 3-116 (122)
59 cd03428 Ap4A_hydrolase_human_l 99.6 3.7E-15 8E-20 120.0 9.9 108 128-270 4-116 (130)
60 cd03676 Nudix_hydrolase_3 Memb 99.6 6.9E-15 1.5E-19 125.7 12.0 115 131-273 39-162 (180)
61 cd02883 Nudix_Hydrolase Nudix 99.6 2.1E-14 4.6E-19 112.8 11.0 109 128-269 2-112 (123)
62 TIGR00052 nudix-type nucleosid 99.6 2.6E-14 5.7E-19 122.7 12.2 132 126-284 44-181 (185)
63 PRK10707 putative NUDIX hydrol 99.6 2.6E-14 5.7E-19 123.1 11.8 112 128-270 32-147 (190)
64 cd04686 Nudix_Hydrolase_27 Mem 99.6 2.1E-14 4.5E-19 116.4 10.5 107 128-269 2-119 (131)
65 PRK00241 nudC NADH pyrophospha 99.6 1.2E-14 2.6E-19 130.7 9.9 107 126-269 132-238 (256)
66 PRK05379 bifunctional nicotina 99.6 2.4E-14 5.1E-19 134.1 12.2 119 127-278 204-331 (340)
67 PRK15009 GDP-mannose pyrophosp 99.6 6E-14 1.3E-18 120.9 13.7 165 57-287 9-185 (191)
68 PRK10729 nudF ADP-ribose pyrop 99.5 1.4E-13 3E-18 119.7 13.6 134 126-287 49-190 (202)
69 cd04661 MRP_L46 Mitochondrial 99.5 3E-14 6.4E-19 115.7 8.6 99 136-270 11-121 (132)
70 PLN02709 nudix hydrolase 99.5 7.1E-14 1.5E-18 122.1 10.9 115 126-270 33-156 (222)
71 PRK08999 hypothetical protein; 99.5 1.7E-13 3.7E-18 126.8 11.8 106 130-269 9-114 (312)
72 cd04674 Nudix_Hydrolase_16 Mem 99.5 3.2E-13 7E-18 107.5 10.1 101 133-265 11-111 (118)
73 PLN03143 nudix hydrolase; Prov 99.4 3.6E-12 7.7E-17 115.9 14.9 138 125-289 127-283 (291)
74 PLN02552 isopentenyl-diphospha 99.4 4.4E-12 9.6E-17 113.0 13.8 135 126-271 56-205 (247)
75 TIGR02705 nudix_YtkD nucleosid 99.4 8E-12 1.7E-16 104.0 12.4 108 125-273 23-131 (156)
76 PRK10880 adenine DNA glycosyla 99.4 2.7E-14 5.8E-19 133.2 -3.2 134 17-160 115-263 (350)
77 cd04665 Nudix_Hydrolase_8 Memb 99.4 3.4E-12 7.4E-17 101.7 9.3 99 129-266 3-102 (118)
78 cd04662 Nudix_Hydrolase_5 Memb 99.4 5.1E-12 1.1E-16 101.3 10.1 49 138-208 15-65 (126)
79 PLN02791 Nudix hydrolase homol 99.3 9.5E-12 2.1E-16 125.8 12.2 117 127-272 33-161 (770)
80 COG2816 NPY1 NTP pyrophosphohy 99.3 3.7E-12 7.9E-17 113.9 4.7 102 132-269 149-250 (279)
81 cd03670 ADPRase_NUDT9 ADP-ribo 99.2 5.7E-11 1.2E-15 101.6 10.1 54 127-207 35-91 (186)
82 cd04663 Nudix_Hydrolase_6 Memb 99.2 7.5E-11 1.6E-15 94.8 9.1 51 129-207 3-55 (126)
83 COG1194 MutY A/G-specific DNA 99.2 3.6E-13 7.7E-18 123.5 -6.2 141 16-165 118-273 (342)
84 KOG3084 NADH pyrophosphatase I 99.2 8.4E-12 1.8E-16 112.0 2.0 107 129-270 190-299 (345)
85 KOG3069 Peroxisomal NUDIX hydr 99.2 1.6E-10 3.4E-15 100.1 8.9 112 126-268 43-162 (246)
86 COG0494 MutT NTP pyrophosphohy 99.1 8E-10 1.7E-14 88.8 9.5 102 138-270 24-135 (161)
87 cd03431 DNA_Glycosylase_C DNA 99.0 3E-09 6.6E-14 83.5 9.9 98 132-269 8-105 (118)
88 TIGR01084 mutY A/G-specific ad 99.0 1.7E-11 3.6E-16 111.3 -5.0 136 17-161 111-261 (275)
89 PRK13910 DNA glycosylase MutY; 99.0 3.8E-11 8.1E-16 109.4 -3.0 131 17-160 78-217 (289)
90 KOG2457 A/G-specific adenine D 98.9 3E-10 6.4E-15 104.5 0.1 84 17-109 212-299 (555)
91 COG1443 Idi Isopentenyldiphosp 98.8 1.5E-08 3.3E-13 84.1 7.3 117 127-272 34-156 (185)
92 KOG0648 Predicted NUDIX hydrol 98.8 3.4E-09 7.3E-14 95.4 2.7 120 120-270 109-232 (295)
93 KOG2839 Diadenosine and diphos 98.8 2E-08 4.3E-13 81.0 6.4 108 128-269 11-125 (145)
94 KOG3041 Nucleoside diphosphate 98.7 1.2E-07 2.6E-12 80.1 10.9 119 126-270 75-195 (225)
95 PLN02839 nudix hydrolase 98.6 4.9E-07 1.1E-11 84.2 10.5 106 138-270 218-328 (372)
96 PF14815 NUDIX_4: NUDIX domain 98.5 3E-07 6.5E-12 72.4 6.0 102 131-269 2-103 (114)
97 KOG0142 Isopentenyl pyrophosph 97.4 0.00011 2.4E-09 62.6 2.7 122 129-272 55-186 (225)
98 COG4112 Predicted phosphoester 97.2 0.0018 4E-08 53.4 8.2 119 131-273 66-191 (203)
99 KOG4195 Transient receptor pot 96.9 0.00083 1.8E-08 58.1 3.6 38 139-203 140-177 (275)
100 COG4119 Predicted NTP pyrophos 96.9 0.0026 5.6E-08 50.4 5.9 91 153-268 35-134 (161)
101 KOG4313 Thiamine pyrophosphoki 95.6 0.038 8.2E-07 48.8 6.5 104 139-269 149-258 (306)
102 KOG2937 Decapping enzyme compl 93.9 0.018 3.9E-07 52.9 0.4 113 122-268 78-191 (348)
103 PRK10702 endonuclease III; Pro 91.4 0.0032 6.8E-08 55.2 -7.9 83 17-109 115-197 (211)
104 PF13869 NUDIX_2: Nucleotide h 89.1 0.51 1.1E-05 40.4 3.9 53 127-207 44-99 (188)
105 TIGR01083 nth endonuclease III 84.7 0.014 3.1E-07 50.2 -8.1 80 17-106 112-191 (191)
106 PF14443 DBC1: DBC1 83.4 1.4 3.1E-05 35.2 3.4 22 191-212 42-63 (126)
107 KOG1689 mRNA cleavage factor I 81.2 3.5 7.6E-05 34.6 5.0 40 138-205 84-123 (221)
108 KOG4432 Uncharacterized NUDIX 81.2 9.8 0.00021 34.9 8.2 134 126-270 229-377 (405)
109 KOG4548 Mitochondrial ribosoma 70.2 23 0.0005 31.7 7.5 99 139-269 140-247 (263)
110 KOG4432 Uncharacterized NUDIX 68.3 8.8 0.00019 35.2 4.6 21 191-211 94-114 (405)
111 PRK13913 3-methyladenine DNA g 60.8 1.5 3.3E-05 38.6 -1.6 35 16-53 126-160 (218)
112 PF03487 IL13: Interleukin-13; 33.6 22 0.00047 22.4 0.9 11 193-203 26-36 (43)
113 smart00478 ENDO3c endonuclease 29.9 12 0.00026 30.3 -1.0 35 16-53 77-111 (149)
114 COG0177 Nth Predicted EndoIII- 27.5 18 0.00039 31.7 -0.3 74 17-110 115-198 (211)
115 COG5350 Predicted protein tyro 25.2 32 0.0007 28.6 0.8 25 4-28 89-113 (172)
116 TIGR00588 ogg 8-oxoguanine DNA 24.0 17 0.00038 33.6 -1.1 37 17-55 226-262 (310)
117 cd09232 Snurportin-1_C C-termi 20.6 94 0.002 26.6 2.8 40 123-163 26-65 (186)
No 1
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.78 E-value=1.3e-18 Score=143.57 Aligned_cols=113 Identities=19% Similarity=0.204 Sum_probs=82.9
Q ss_pred CcccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCC
Q 022346 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (298)
Q Consensus 126 ~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (298)
.++|+++|++.+|+|||+||... .++|+|.+|||++|+||+ +.+||+||++||||+
T Consensus 12 ~v~v~~vI~~~~g~vLl~~R~~~--p~~g~w~lPGG~ve~gEs----------------------~~~aa~RE~~EE~Gl 67 (144)
T cd03430 12 LVSIDLIVENEDGQYLLGKRTNR--PAQGYWFVPGGRIRKNET----------------------LTEAFERIAKDELGL 67 (144)
T ss_pred eEEEEEEEEeCCCeEEEEEccCC--CCCCcEECCCceecCCCC----------------------HHHHHHHHHHHHHCC
Confidence 56788889888899999999864 568999999999999998 579999999999999
Q ss_pred CCCCCCCCeeEEeecccc------cC--CceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 206 PSESLCNPLFIGISRRRL------NV--RPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 206 ~~~~~~~p~~l~~~~~~~------~~--~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
.+.... ..++++..+.+ .. .....+++.|....+++. ....|..++.|++++++.++
T Consensus 68 ~v~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~e~~~~~W~~~~el~~~ 132 (144)
T cd03430 68 EFLISD-AELLGVFEHFYDDNFFGDDFSTHYVVLGYVLKLSSNELL------LPDEQHSEYQWLTSDELLAD 132 (144)
T ss_pred Cccccc-ceEEEEEEEEeccccccCCCccEEEEEEEEEEEcCCccc------CCchhccEeEEecHHHHhcC
Confidence 886541 12666543211 11 122233455544444432 34668999999999999965
No 2
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=1.5e-18 Score=138.84 Aligned_cols=115 Identities=23% Similarity=0.337 Sum_probs=79.1
Q ss_pred ccEEEEEeCCCeEEEEEecCC-CCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCC
Q 022346 128 GNGAVVETSDKKILLLQRSNN-VGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (298)
Q Consensus 128 gV~~vl~~~dg~vLl~rRs~~-~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (298)
||+++++..+|+|||+||+.. ...++|+|+||||++|++|+ +++||+||++||||+.
T Consensus 2 ~v~~~~~~~~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~----------------------~~~aa~RE~~EE~Gl~ 59 (122)
T cd04682 2 GVALALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGET----------------------PLECVLRELLEEIGLT 59 (122)
T ss_pred ceEEEEEEcCCEEEEEEccCCCCCCCCCcEeCCCccccCCCC----------------------HHHHHHHHHHHHhCCc
Confidence 455555557799999999876 44689999999999999998 4799999999999999
Q ss_pred CCCCCCCeeEEeecccccCCceEEEEEEecCChhh-HHhhhccCCCCCcccceEEEcHHHHhchhccC
Q 022346 207 SESLCNPLFIGISRRRLNVRPAAFFFIKCSLQSNE-IQQLYSTAQDGYESTQLFAVSMIELENMASKM 273 (298)
Q Consensus 207 ~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~e-v~~~~~~~~d~~E~~~~~wv~~~el~~l~~~~ 273 (298)
+..... .+.... .........++|.+...... .. .+.+|+.++.|++++++.+..+..
T Consensus 60 ~~~~~~-~~~~~~--~~~~~~~~~~~f~~~~~~~~~~~------~~~~E~~~~~W~~~~el~~~~~~~ 118 (122)
T cd04682 60 LPESRI-PWFRVY--PSASPPGTEHVFVVPLTAREDAI------LFGDEGQALRLMTVEEFLAHEDAI 118 (122)
T ss_pred cccccc-ceeEec--ccCCCCceEEEEEEEEecCCCcc------ccCchhheeecccHHHHhhccccC
Confidence 864331 122222 11122233333444333322 22 456799999999999998765443
No 3
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.76 E-value=3e-18 Score=143.47 Aligned_cols=113 Identities=15% Similarity=0.192 Sum_probs=81.5
Q ss_pred CcccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCC
Q 022346 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (298)
Q Consensus 126 ~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (298)
.++|.++|++.+|+|||+||+.. ..+|+|+||||++|+||+ +.+||+||++|||||
T Consensus 17 ~~~v~~vI~~~~g~VLL~kR~~~--~~~g~W~lPGG~VE~GEt----------------------~~~Aa~REl~EEtGl 72 (159)
T PRK15434 17 LISLDFIVENSRGEFLLGKRTNR--PAQGYWFVPGGRVQKDET----------------------LEAAFERLTMAELGL 72 (159)
T ss_pred eEEEEEEEECCCCEEEEEEccCC--CCCCcEECCceecCCCCC----------------------HHHHHHHHHHHHHCC
Confidence 35788888877899999999854 568999999999999999 579999999999999
Q ss_pred CCCCCCCCeeEEeeccccc----C----CceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 206 PSESLCNPLFIGISRRRLN----V----RPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 206 ~~~~~~~p~~l~~~~~~~~----~----~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
.+.... ..++++..+.+. + .....++|.+....+++. ....|+.++.|++++++..+
T Consensus 73 ~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~g~~~------~~~~E~~~~~W~~~~el~~~ 137 (159)
T PRK15434 73 RLPITA-GQFYGVWQHFYDDNFSGTDFTTHYVVLGFRLRVAEEDLL------LPDEQHDDYRWLTPDALLAS 137 (159)
T ss_pred cccccc-ceEEEEEEeecccccCCCccceEEEEEEEEEEecCCccc------CChHHeeEEEEEeHHHhhhc
Confidence 865321 126665332221 1 112333455555544443 44558999999999999865
No 4
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=4.5e-18 Score=136.45 Aligned_cols=112 Identities=22% Similarity=0.254 Sum_probs=81.7
Q ss_pred CcccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCC
Q 022346 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (298)
Q Consensus 126 ~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (298)
.++|+++|++.+|+|||++|+.. ..+|.|.+|||++|++|+ +.+||+||++||||+
T Consensus 2 ~~~~~~~i~~~~~~vLL~~r~~~--~~~~~w~lPgG~ve~gEt----------------------~~eaa~RE~~EEtGl 57 (125)
T cd04679 2 RVGCGAAILRDDGKLLLVKRLRA--PEAGHWGIPGGKVDWMEA----------------------VEDAVVREIEEETGL 57 (125)
T ss_pred ceEEEEEEECCCCEEEEEEecCC--CCCCeEeCCeeeccCCCC----------------------HHHHHHHHHHHHHCC
Confidence 36788889988899999999865 357999999999999998 579999999999999
Q ss_pred CCCCCCCCeeEEeeccccc--CCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 206 PSESLCNPLFIGISRRRLN--VRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 206 ~~~~~~~p~~l~~~~~~~~--~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
.+.... +++...+... ......++|.+....+... ..+.+|+.++.|++++++.+.
T Consensus 58 ~~~~~~---~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-----~~~~~E~~~~~W~~~~~l~~~ 115 (125)
T cd04679 58 SIHSTR---LLCVVDHIIEEPPQHWVAPVYLAENFSGEPR-----LMEPDKLLELGWFALDALPQP 115 (125)
T ss_pred Ccccce---EEEEEeecccCCCCeEEEEEEEEeecCCccc-----cCCCccccEEEEeCHHHCCch
Confidence 987765 6665433221 2222333444444433322 134568999999999998753
No 5
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=3.7e-18 Score=137.47 Aligned_cols=112 Identities=17% Similarity=0.208 Sum_probs=81.4
Q ss_pred ccEEEEEeCCCeEEEEEecCCCCCCCCcEEc-CCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCC
Q 022346 128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVF-PGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (298)
Q Consensus 128 gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~-PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (298)
++.+++++.+|+|||++|+.....+||+|++ |||+++++|+ +.++|+||+.||||+.
T Consensus 2 ~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~----------------------~~~aa~REl~EEtGl~ 59 (126)
T cd04697 2 ATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGES----------------------YLQNAQRELEEELGID 59 (126)
T ss_pred eEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCC----------------------HHHHHHHHHHHHHCCC
Confidence 5678889999999999999876568999998 6999999998 4699999999999999
Q ss_pred CCCCCCCeeEEeecccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchhc
Q 022346 207 SESLCNPLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMAS 271 (298)
Q Consensus 207 ~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~ 271 (298)
+..+. .++.............+++.+... .++. .+..|..++.|++++++.++..
T Consensus 60 ~~~l~---~~~~~~~~~~~~~~~~~~f~~~~~-~~~~------~~~~E~~~~~w~~~~el~~~~~ 114 (126)
T cd04697 60 GVQLT---PLGLFYYDTDGNRVWGKVFSCVYD-GPLK------LQEEEVEEITWLSINEILQFKE 114 (126)
T ss_pred ccccE---EeeEEEecCCCceEEEEEEEEEEC-CCCC------CCHhHhhheEEcCHHHHHHHhh
Confidence 87655 444433222211222222333222 2222 4456889999999999998774
No 6
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=5.9e-18 Score=136.19 Aligned_cols=116 Identities=18% Similarity=0.194 Sum_probs=80.8
Q ss_pred ccEEEEEeCCCeEEEEEecCCCCCCCCcEEcC-CcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCC
Q 022346 128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFP-GGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (298)
Q Consensus 128 gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~P-GG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (298)
.|.+++++.+|+|||+||+.....+||+|++| ||++|++|+ + +||+||++||||+.
T Consensus 2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~----------------------~-~aa~REl~EEtGl~ 58 (127)
T cd04693 2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGET----------------------S-TAAEREVKEELGLE 58 (127)
T ss_pred eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCC----------------------H-HHHHHHHHHHhCCC
Confidence 46777888899999999998765689999998 999999998 7 99999999999999
Q ss_pred CCCCCCCeeEEeecccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchhccCC
Q 022346 207 SESLCNPLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMASKMP 274 (298)
Q Consensus 207 ~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~~~~ 274 (298)
+.... ...++.......+... .+++.+......+. .+..|+.++.|++++++.++..+.+
T Consensus 59 ~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~E~~~~~w~~~~el~~~~~~~~ 118 (127)
T cd04693 59 LDFSE-LRPLFRYFFEAEGFDD-YYLFYADVEIGKLI------LQKEEVDEVKFVSKDEIDGLIGHGE 118 (127)
T ss_pred cChhh-cEEEEEEEeecCCeEE-EEEEEecCcccccc------cCHHHhhhEEEeCHHHHHHHHhcCC
Confidence 76432 1123322211112222 22233322222322 4566899999999999999875443
No 7
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=1.1e-17 Score=133.17 Aligned_cols=113 Identities=22% Similarity=0.296 Sum_probs=77.4
Q ss_pred cccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCC
Q 022346 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (298)
Q Consensus 127 ~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (298)
++|.++++ .+|+|||+||... +..+|+|++|||++|++|+ +.+||+||++||||+.
T Consensus 1 ~~v~~vi~-~~~~vLL~~r~~~-~~~~~~w~lPgG~ve~gE~----------------------~~~aa~REl~EEtGl~ 56 (120)
T cd04683 1 VAVYVLLR-RDDEVLLQRRANT-GYMDGQWALPAGHLEKGED----------------------AVTAAVREAREEIGVT 56 (120)
T ss_pred CcEEEEEE-ECCEEEEEEccCC-CCCCCeEeCCccccCCCCC----------------------HHHHHHHHHHHHHCCc
Confidence 35677766 5789999999865 3568999999999999998 4699999999999998
Q ss_pred CCCCCCCeeEEeeccccc-CCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 207 SESLCNPLFIGISRRRLN-VRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 207 ~~~~~~p~~l~~~~~~~~-~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
+.... ..+++....... ......+||.+....+... ..+.+|+.++.|++++++...
T Consensus 57 v~~~~-~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-----~~~~~e~~~~~W~~~~~l~~~ 114 (120)
T cd04683 57 LDPED-LRLAHTMHRRTEDIESRIGLFFTVRRWSGEPR-----NCEPDKCAELRWFPLDALPDD 114 (120)
T ss_pred cChhh-eEEEEEEEecCCCCceEEEEEEEEEeecCccc-----cCCCCcEeeEEEEchHHCcch
Confidence 76211 124554322221 1222334455543333222 134568899999999999864
No 8
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=1.6e-17 Score=131.74 Aligned_cols=106 Identities=18% Similarity=0.282 Sum_probs=80.1
Q ss_pred ccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCC
Q 022346 128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS 207 (298)
Q Consensus 128 gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~ 207 (298)
||.+++++.+|++||+||+.. +.|.||||+++++|+ +.+||+||++||||+.+
T Consensus 2 ~~~~~i~~~~~~vLL~~r~~~-----~~w~~PgG~ve~gEt----------------------~~~aa~REl~EEtG~~~ 54 (120)
T cd04680 2 GARAVVTDADGRVLLVRHTYG-----PGWYLPGGGLERGET----------------------FAEAARRELLEELGIRL 54 (120)
T ss_pred ceEEEEECCCCeEEEEEECCC-----CcEeCCCCcCCCCCC----------------------HHHHHHHHHHHHHCCcc
Confidence 677888888899999998754 389999999999998 47999999999999998
Q ss_pred C-CCCCCeeEEeecccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 208 E-SLCNPLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 208 ~-~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
. ... +++.............++|.+........ .+..|..++.|++++++.++
T Consensus 55 ~~~~~---~~~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~~~E~~~~~w~~~~~l~~~ 108 (120)
T cd04680 55 AVVAE---LLGVYYHSASGSWDHVIVFRARADTQPVI------RPSHEISEARFFPPDALPEP 108 (120)
T ss_pred ccccc---eEEEEecCCCCCceEEEEEEecccCCCcc------CCcccEEEEEEECHHHCccc
Confidence 8 655 66665443333333445555655543322 45568999999999999864
No 9
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.74 E-value=3.7e-17 Score=133.07 Aligned_cols=131 Identities=16% Similarity=0.083 Sum_probs=87.1
Q ss_pred CcccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCC
Q 022346 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (298)
Q Consensus 126 ~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (298)
+-+|++++++.++++||++|.+.. ..++.|++|||++|++|+ +.+||+||++||||+
T Consensus 2 ~~~v~v~~~~~~~~iLl~~~~~~~-~~~~~w~~PgG~ve~gEs----------------------~~~aa~RE~~EE~Gl 58 (137)
T cd03424 2 PDAVAVLPYDDDGKVVLVRQYRPP-VGGWLLELPAGLIDPGED----------------------PEEAARRELEEETGY 58 (137)
T ss_pred CCEEEEEEEcCCCeEEEEEeeecC-CCCEEEEeCCccCCCCCC----------------------HHHHHHHHHHHHHCC
Confidence 557888999999999999887653 467899999999999998 469999999999999
Q ss_pred CCCCCCCCeeEEeecccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchhccCCC-CchhHHHHH
Q 022346 206 PSESLCNPLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMASKMPG-CHQGGFALY 284 (298)
Q Consensus 206 ~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~~~~~-~~~g~~~~y 284 (298)
.+..+. .++.............++|.+........ ...+..|..++.|++++++.++...... ...+.+.++
T Consensus 59 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~E~~~~~w~~~~el~~~~~~~~~~~~~~~~~~~ 131 (137)
T cd03424 59 EAGDLE---KLGSFYPSPGFSDERIHLFLAEDLSPGEE----GLLDEGEDIEVVLVPLDEALELLADGEIIDDATLIALL 131 (137)
T ss_pred CccceE---EEeeEecCCcccCccEEEEEEEccccccc----CCCCCCCeeEEEEecHHHHHHHHHcCCCcccHHHHHHH
Confidence 987554 44443221111111122223323322210 0145668999999999999988754332 233444444
Q ss_pred HH
Q 022346 285 KL 286 (298)
Q Consensus 285 ~~ 286 (298)
.-
T Consensus 132 ~~ 133 (137)
T cd03424 132 LW 133 (137)
T ss_pred HH
Confidence 43
No 10
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=1.2e-17 Score=132.76 Aligned_cols=107 Identities=24% Similarity=0.327 Sum_probs=76.3
Q ss_pred cEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCC
Q 022346 129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE 208 (298)
Q Consensus 129 V~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~ 208 (298)
|+++++ .+++|||+||+.....++|.|+||||++|++|+ +.+||+||++||||+.+.
T Consensus 3 v~~vi~-~~~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~----------------------~~~aa~REl~EEtGl~~~ 59 (117)
T cd04691 3 VVGVLF-SDDKVLLERRSLTKNADPGKLNIPGGHIEAGES----------------------QEEALLREVQEELGVDPL 59 (117)
T ss_pred EEEEEE-ECCEEEEEEeCCCCCCCCCeEECcceeecCCCC----------------------HHHHHHHHHHHHHCCCcc
Confidence 445555 458999999987654589999999999999998 479999999999999875
Q ss_pred CCCCCeeEEeecccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchh
Q 022346 209 SLCNPLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMA 270 (298)
Q Consensus 209 ~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~ 270 (298)
... .++....... ....++||.+....+.+ ...|..++.|++++++..+.
T Consensus 60 ~~~---~l~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~E~~~~~W~~~~~l~~~~ 109 (117)
T cd04691 60 SYT---YLCSLYHPTS-ELQLLHYYVVTFWQGEI--------PAQEAAEVHWMTANDIVLAS 109 (117)
T ss_pred cce---EEEEEeccCC-CeEEEEEEEEEEecCCC--------CcccccccEEcCHHHcchhh
Confidence 554 4444322221 22334444554433332 23688999999999998653
No 11
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=1.3e-17 Score=134.41 Aligned_cols=108 Identities=19% Similarity=0.334 Sum_probs=78.9
Q ss_pred cccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCC
Q 022346 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (298)
Q Consensus 127 ~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (298)
.+|.++|++.+|+|||++|... ..+|.|.+|||++|++|+ +.+||+||++||||+.
T Consensus 2 ~av~~~i~~~~~~vLL~~r~~~--~~~~~w~~PgG~ve~gEs----------------------~~~aa~RE~~EEtGl~ 57 (130)
T cd04681 2 AAVGVLILNEDGELLVVRRARE--PGKGTLDLPGGFVDPGES----------------------AEEALIREIREETGLK 57 (130)
T ss_pred ceEEEEEEcCCCcEEEEEecCC--CCCCcEeCCceeecCCCC----------------------HHHHHHHHHHHHhCCc
Confidence 3677888888999999999865 358999999999999998 5799999999999999
Q ss_pred CCCCCCCeeEEeecccc--cCCce--EEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHh
Q 022346 207 SESLCNPLFIGISRRRL--NVRPA--AFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELE 267 (298)
Q Consensus 207 ~~~~~~p~~l~~~~~~~--~~~~~--~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~ 267 (298)
+..+. +++.....+ .+... ..+++.+........ .+..|+.++.|+++++|.
T Consensus 58 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~e~~~~~W~~~~el~ 113 (130)
T cd04681 58 VTELS---YLFSLPNTYPYGGMEYDTLDLFFVCQVDDKPIV------KAPDDVAELKWVVPQDIE 113 (130)
T ss_pred cccee---EEEeecceeeeCCceeEEEEEEEEEEeCCCCCc------CChHHhheeEEecHHHCC
Confidence 87665 555433222 12221 123445544433222 455689999999999985
No 12
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=1.8e-17 Score=133.28 Aligned_cols=110 Identities=25% Similarity=0.443 Sum_probs=76.8
Q ss_pred CcccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCC
Q 022346 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (298)
Q Consensus 126 ~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (298)
.++|++++++.+++|||+||... ++|.|.+|||++|++|+ +.+||+||++||||+
T Consensus 2 ~~~~~~~v~~~~~~vLl~~r~~~---~~~~w~~PGG~ve~gEt----------------------~~~aa~RE~~EE~Gl 56 (127)
T cd04670 2 TVGVGGLVLNEKNEVLVVQERNK---TPNGWKLPGGLVDPGED----------------------IFDGAVREVLEETGI 56 (127)
T ss_pred eeEEEEEEEcCCCeEEEEEccCC---CCCcEECCCccCCCCCC----------------------HHHHHHHHHHHHHCC
Confidence 46788899988899999988654 57999999999999998 579999999999999
Q ss_pred CCCCCCCCeeEEeecccccCCceEEEEEEecCCh--hhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 206 PSESLCNPLFIGISRRRLNVRPAAFFFIKCSLQS--NEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 206 ~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~--~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
.+.... +++.............+|+.+.... .++. .+.+|..++.|++++++.+.
T Consensus 57 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~E~~~~~w~~~~el~~~ 113 (127)
T cd04670 57 DTEFVS---VVGFRHAHPGAFGKSDLYFICRLKPLSFDIN------FDTSEIAAAKWMPLEEYISQ 113 (127)
T ss_pred CcceeE---EEEEEecCCCCcCceeEEEEEEEccCcCcCC------CChhhhheeEEEcHHHHhcc
Confidence 886544 4443221111111122223332221 1111 45668889999999999754
No 13
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.73 E-value=2.3e-17 Score=141.09 Aligned_cols=127 Identities=17% Similarity=0.179 Sum_probs=87.0
Q ss_pred CcccEEEEEeCCCeEEEEEecCCCCCCCCcEE-cCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhC
Q 022346 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFV-FPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG 204 (298)
Q Consensus 126 ~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~-~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG 204 (298)
..++.++|++.+|+|||++|+.....+||.|. +|||++++||+ +.+||+|||+||||
T Consensus 37 h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs----------------------~~eAA~REL~EEtG 94 (180)
T PRK15393 37 HRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQ----------------------LLESARREAEEELG 94 (180)
T ss_pred eEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCC----------------------HHHHHHHHHHHHHC
Confidence 34567777888899999999877656789986 79999999998 47999999999999
Q ss_pred CCCCCCCCCeeEEeecccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchhccCCCCchhHHHHH
Q 022346 205 VPSESLCNPLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMASKMPGCHQGGFALY 284 (298)
Q Consensus 205 l~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~~~~~~~~g~~~~y 284 (298)
|....+. +++.+...........++|.+.. .+.+. .+..|+.++.|++++++.++...+++....++..|
T Consensus 95 l~~~~~~---~~~~~~~~~~~~~~~~~~f~~~~-~~~~~------~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~ 164 (180)
T PRK15393 95 IAGVPFA---EHGQFYFEDENCRVWGALFSCVS-HGPFA------LQEEEVSEVCWMTPEEITARCDEFTPDSLKALALW 164 (180)
T ss_pred CCCccce---eceeEEecCCCceEEEEEEEEEe-CCCCC------CChHHeeEEEECCHHHHhhhhhhcCccHHHHHHHH
Confidence 9876554 44433222112222222333322 22222 45679999999999999988655655444344444
No 14
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=1.6e-17 Score=133.90 Aligned_cols=114 Identities=23% Similarity=0.348 Sum_probs=82.3
Q ss_pred CcccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCC
Q 022346 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (298)
Q Consensus 126 ~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (298)
.++|+++|++.+|+|||+||... ..+|.|.+|||+++++|+ +.+||+||++||||+
T Consensus 2 ~~~v~~ii~~~~~~iLl~~r~~~--~~~~~w~~PGG~ve~gEt----------------------~~~Aa~REl~EE~Gl 57 (129)
T cd04678 2 RVGVGVFVLNPKGKVLLGKRKGS--HGAGTWALPGGHLEFGES----------------------FEECAAREVLEETGL 57 (129)
T ss_pred ceEEEEEEECCCCeEEEEeccCC--CCCCeEECCcccccCCCC----------------------HHHHHHHHHHHHhCC
Confidence 46788889988899999999864 467999999999999998 579999999999999
Q ss_pred CCCCCCCCeeEEeecccc--cCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 206 PSESLCNPLFIGISRRRL--NVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 206 ~~~~~~~p~~l~~~~~~~--~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
.+.... .++...... .......+++.+....++.... ..+.+|+.++.|++++++.++
T Consensus 58 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 58 HIENVQ---FLTVTNDVFEEEGKHYVTIFVKAEVDDGEAEPN---KMEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred cccceE---EEEEEeEEeCCCCcEEEEEEEEEEeCCCCcccC---CCCCceeCceEEeCHHHCCCc
Confidence 987665 555432211 1222233344554444332200 024568889999999999976
No 15
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=2.3e-17 Score=131.18 Aligned_cols=108 Identities=24% Similarity=0.314 Sum_probs=77.3
Q ss_pred cccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCC
Q 022346 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (298)
Q Consensus 127 ~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (298)
++|+++++ .+++|||+||+.. .++|.|.||||++|++|+ +++||+||++||||+.
T Consensus 1 ~~v~~ii~-~~~~vLl~~r~~~--~~~~~w~~PgG~ie~gE~----------------------~~~aa~RE~~EEtGl~ 55 (122)
T cd04673 1 VAVGAVVF-RGGRVLLVRRANP--PDAGLWSFPGGKVELGET----------------------LEQAALRELLEETGLE 55 (122)
T ss_pred CcEEEEEE-ECCEEEEEEEcCC--CCCCeEECCCcccCCCCC----------------------HHHHHHHHHHHhhCcE
Confidence 36677777 4689999999865 468999999999999998 4799999999999999
Q ss_pred CCCCCCCeeEEeeccccc------CCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 207 SESLCNPLFIGISRRRLN------VRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 207 ~~~~~~p~~l~~~~~~~~------~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
+.... +++....... .....++++.+....+++ .+..|+.++.|++++++.++
T Consensus 56 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~E~~~~~w~~~~el~~~ 114 (122)
T cd04673 56 AEVGR---LLTVVDVIERDAAGRVEFHYVLIDFLCRYLGGEP-------VAGDDALDARWVPLDELAAL 114 (122)
T ss_pred eeece---eEEEEEEeeccCCCccceEEEEEEEEEEeCCCcc-------cCCcccceeEEECHHHHhhC
Confidence 87665 5554332211 111222334454444333 23458899999999999976
No 16
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.73 E-value=1.4e-17 Score=136.95 Aligned_cols=117 Identities=18% Similarity=0.200 Sum_probs=82.2
Q ss_pred CcccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCC
Q 022346 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (298)
Q Consensus 126 ~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (298)
..+|++++++.++++||++|... ..+|.|+||||++++||+ +.+||+||++||||+
T Consensus 13 ~~av~~vv~~~~~~vLL~~r~~~--~~~~~w~lPgG~ve~gEt----------------------~~~aa~REl~EEtGl 68 (142)
T cd04700 13 ARAAGAVILNERNDVLLVQEKGG--PKKGLWHIPSGAVEDGEF----------------------PQDAAVREACEETGL 68 (142)
T ss_pred eeeEEEEEEeCCCcEEEEEEcCC--CCCCeEECCceecCCCCC----------------------HHHHHHHHHHHhhCc
Confidence 56678888888899999998654 458999999999999999 469999999999999
Q ss_pred CCCCCCCCeeEEeeccccc-CCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchhccCC
Q 022346 206 PSESLCNPLFIGISRRRLN-VRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMASKMP 274 (298)
Q Consensus 206 ~~~~~~~p~~l~~~~~~~~-~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~~~~ 274 (298)
.+.... +++....... ......+++.+........ .....|+.++.|++++++.++..+.-
T Consensus 69 ~~~~~~---~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-----~~~~~E~~~~~w~~~~el~~~~~~g~ 130 (142)
T cd04700 69 RVRPVK---FLGTYLGRFDDGVLVLRHVWLAEPEGQTLA-----PKFTDEIAEASFFSREDVAQLYAQGQ 130 (142)
T ss_pred eeeccE---EEEEEEEEcCCCcEEEEEEEEEEecCCccc-----cCCCCCEEEEEEECHHHhhhcccccc
Confidence 987765 5554322222 2222223344433322111 11235899999999999999875433
No 17
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.73 E-value=5.2e-17 Score=131.80 Aligned_cols=126 Identities=22% Similarity=0.299 Sum_probs=84.9
Q ss_pred EEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCCCC
Q 022346 131 AVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL 210 (298)
Q Consensus 131 ~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~~ 210 (298)
++++..+|+|||+||... +.++|+|+||||++|++|++ .+|++||+.||||+.+...
T Consensus 8 ~~ii~~~~~vLL~~R~~~-~~~~g~w~~PgG~ve~gE~~----------------------~~a~~RE~~EE~Gl~~~~~ 64 (135)
T PRK10546 8 AAIIERDGKILLAQRPAH-SDQAGLWEFAGGKVEPGESQ----------------------PQALIRELREELGIEATVG 64 (135)
T ss_pred EEEEecCCEEEEEEccCC-CCCCCcEECCcccCCCCCCH----------------------HHHHHHHHHHHHCCccccc
Confidence 334457889999999765 36889999999999999984 5899999999999997654
Q ss_pred CCCeeEEeecccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchhccCCCCchhHHHHHHHHHHH
Q 022346 211 CNPLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMASKMPGCHQGGFALYKLMVEA 290 (298)
Q Consensus 211 ~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~~~~~~~~g~~~~y~~~~~~ 290 (298)
. +++...+.++++....+++.+....+++. ..|..++.|++++++.++ .+++..+ .+++.+.++
T Consensus 65 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~e~~~~~W~~~~el~~~--~~~~~~~---~~l~~~~~~ 128 (135)
T PRK10546 65 E---YVASHQREVSGRRIHLHAWHVPDFHGELQ--------AHEHQALVWCTPEEALRY--PLAPADI---PLLEAFMAL 128 (135)
T ss_pred e---eEEEEEEecCCcEEEEEEEEEEEecCccc--------ccccceeEEcCHHHcccC--CCCcCcH---HHHHHHHHh
Confidence 4 56655444444443343444433322222 236678999999999976 3454443 444445544
Q ss_pred HhhCC
Q 022346 291 MNNIP 295 (298)
Q Consensus 291 ~~~~~ 295 (298)
.+.+|
T Consensus 129 ~~~~~ 133 (135)
T PRK10546 129 RAARP 133 (135)
T ss_pred hccCC
Confidence 44443
No 18
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.73 E-value=4.4e-17 Score=134.70 Aligned_cols=123 Identities=20% Similarity=0.192 Sum_probs=81.7
Q ss_pred CCcccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhC
Q 022346 125 SPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG 204 (298)
Q Consensus 125 ~~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG 204 (298)
.+.+|++++++.+|+|||+||... +|.|++|||++|+||+ +.+||+||++||||
T Consensus 6 ~~~~v~~vi~~~~~~vLl~~r~~~----~~~W~lPgG~ve~gEs----------------------~~~aa~REl~EEtG 59 (148)
T PRK09438 6 RPVSVLVVIYTPDLGVLMLQRADD----PDFWQSVTGSLEEGET----------------------PAQTAIREVKEETG 59 (148)
T ss_pred CceEEEEEEEeCCCeEEEEEecCC----CCcEeCCcccCCCCCC----------------------HHHHHHHHHHHHhC
Confidence 477899999989999999999653 6899999999999999 46999999999999
Q ss_pred CCC--CCCCCCeeEEee--------c---cccc-C-CceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 205 VPS--ESLCNPLFIGIS--------R---RRLN-V-RPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 205 l~~--~~~~~p~~l~~~--------~---~~~~-~-~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
|.+ .... +++.. . +.+. + .....++|.+....+. . .+..|+.++.|++++++.++
T Consensus 60 l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~------~~~~E~~~~~W~~~~e~~~~ 129 (148)
T PRK09438 60 IDVLAEQLT---LIDCQRSIEYEIFPHWRHRYAPGVTRNTEHWFCLALPHER-P------VVLTEHLAYQWLDAREAAAL 129 (148)
T ss_pred cCcccccee---ecccccccccccchhhhhccccccCCceeEEEEEecCCCC-c------cccCcccceeeCCHHHHHHH
Confidence 988 3322 22110 0 0001 1 1222344444433221 1 23349999999999999987
Q ss_pred hccCCCCchhHHHHHH
Q 022346 270 ASKMPGCHQGGFALYK 285 (298)
Q Consensus 270 ~~~~~~~~~g~~~~y~ 285 (298)
. ..+..+-++..|.
T Consensus 130 ~--~~~~~~~~l~~~~ 143 (148)
T PRK09438 130 T--KSWSNAEAIEQLV 143 (148)
T ss_pred h--cChhHHHHHHHHH
Confidence 4 2333443555443
No 19
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.72 E-value=3.1e-17 Score=131.36 Aligned_cols=111 Identities=24% Similarity=0.362 Sum_probs=78.7
Q ss_pred cccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCC
Q 022346 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (298)
Q Consensus 127 ~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (298)
+||.+++++ +++|||+||+... ++|.|.+|||++|+||+ +.+||+||++||||+.
T Consensus 1 ~~~~~ii~~-~~~vLl~~~~~~~--~~~~w~lPgG~ve~gE~----------------------~~~aa~RE~~EEtGl~ 55 (128)
T cd04684 1 FGAYAVIPR-DGKLLLIQKNGGP--YEGRWDLPGGGIEPGES----------------------PEEALHREVLEETGLT 55 (128)
T ss_pred CeeEEEEEe-CCEEEEEEccCCC--CCCeEECCCcccCCCCC----------------------HHHHHHHHHHHHhCcE
Confidence 367777774 5999999998763 68999999999999998 5799999999999999
Q ss_pred CCCCCCCeeEEeecccc--cCC----ceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 207 SESLCNPLFIGISRRRL--NVR----PAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 207 ~~~~~~p~~l~~~~~~~--~~~----~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
+.... +++.....+ ... ....++|.+....+... ...+..|..++.|++++++...
T Consensus 56 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~----~~~~~~e~~~~~W~~~~~l~~~ 117 (128)
T cd04684 56 VEIGR---RLGSASRYFYSPDGDYDAHHLCVFYDARVVGGALP----VQEPGEDSHGAAWLPLDEAIER 117 (128)
T ss_pred eecce---eeeEEEEEEECCCCCeeccEEEEEEEEEEecCccc----cCCCCCCceeeEEECHHHhhcc
Confidence 87665 566533221 111 22334455544443321 0134558889999999999864
No 20
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=4.8e-17 Score=134.03 Aligned_cols=121 Identities=20% Similarity=0.297 Sum_probs=82.0
Q ss_pred cccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCC
Q 022346 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (298)
Q Consensus 127 ~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (298)
++|++++++.+++|||+||+.....++|+|++||||++++|+ +.+||+||+.||||+.
T Consensus 2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~----------------------~~~aa~RE~~EE~gi~ 59 (143)
T cd04694 2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGEN----------------------LLEAGLRELNEETGLT 59 (143)
T ss_pred cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCC----------------------HHHHHHHHHHHHHCCC
Confidence 467888888999999999998765789999999999999998 5799999999999998
Q ss_pred CCCCC-CCeeEEeeccccc---------CCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchh
Q 022346 207 SESLC-NPLFIGISRRRLN---------VRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMA 270 (298)
Q Consensus 207 ~~~~~-~p~~l~~~~~~~~---------~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~ 270 (298)
+.... ...++++....+. ......|++.+........ .....++..|+.++.|++++++.++.
T Consensus 60 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~-~~~~~~~~~Ev~~~~Wv~~~~a~~~~ 132 (143)
T cd04694 60 LDPIDKSWQVLGLWESVYPPLLSRGLPKRHHIVVYILVKSSETHQQL-QARLQPDPNEVSAAAWLDKSLAKAVV 132 (143)
T ss_pred ccccccceeEEeeeccccccccCCCcccceeEEEEEEEEeccccccc-cccccCChhhccceEeeCHHHHHHHH
Confidence 76531 0125554322111 1223333333322111000 00001455799999999999999875
No 21
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.72 E-value=3.4e-17 Score=134.28 Aligned_cols=112 Identities=21% Similarity=0.295 Sum_probs=73.4
Q ss_pred cEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCC
Q 022346 129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE 208 (298)
Q Consensus 129 V~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~ 208 (298)
+.+.++.++|+|||+||+...+.++|.|++|||++|+||+ +.+||+||++|||||.+.
T Consensus 6 ~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs----------------------~~~aa~REl~EEtGl~~~ 63 (141)
T PRK15472 6 IVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGER----------------------IEEALRREIREELGEQLL 63 (141)
T ss_pred EEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCC----------------------HHHHHHHHHHHHHCCcee
Confidence 3344455789999999987766789999999999999998 479999999999999764
Q ss_pred CCCC-C-eeEEee-ccccc-CCc---eEE-EEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 209 SLCN-P-LFIGIS-RRRLN-VRP---AAF-FFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 209 ~~~~-p-~~l~~~-~~~~~-~~~---~~~-~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
.... + .+.... ...+. +.. ... +++.|.....++. . .+|+.++.|++++++.++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~E~~~~~w~~~~el~~l 125 (141)
T PRK15472 64 LTEITPWTFRDDIRTKTYADGRKEEIYMIYLIFDCVSANRDVK------I-NEEFQDYAWVKPEDLVHY 125 (141)
T ss_pred eeeeccccccccceeEEecCCCceeEEEEEEEEEeecCCCccc------C-ChhhheEEEccHHHhccc
Confidence 3210 0 000000 00111 111 111 2234433333332 2 358999999999999987
No 22
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.72 E-value=3.7e-17 Score=136.76 Aligned_cols=111 Identities=22% Similarity=0.307 Sum_probs=78.7
Q ss_pred ccEEEEEeCC--CeEEEEEecCCCCCCCCcEEcCCcccCCC-CCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhC
Q 022346 128 GNGAVVETSD--KKILLLQRSNNVGEFPGHFVFPGGHPEPQ-DAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG 204 (298)
Q Consensus 128 gV~~vl~~~d--g~vLl~rRs~~~~~~~g~w~~PGG~vE~~-E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG 204 (298)
+|.+++.+.+ ++|||+||+.....++|.|+||||++|+| |+ +.+||+||++||||
T Consensus 4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs----------------------~~eaa~REl~EEtG 61 (157)
T cd03426 4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDED----------------------PVATALREAEEEIG 61 (157)
T ss_pred EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCC----------------------HHHHHHHHHHHHhC
Confidence 4555666555 68999999987656899999999999999 88 46999999999999
Q ss_pred CCCCCCCCCeeEEeecccc--cCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchh
Q 022346 205 VPSESLCNPLFIGISRRRL--NVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMA 270 (298)
Q Consensus 205 l~~~~~~~p~~l~~~~~~~--~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~ 270 (298)
+.+..+. +++...... .......|++.+... .++. .+..|+.++.|++++++.+..
T Consensus 62 l~~~~~~---~l~~~~~~~~~~~~~v~~~~~~~~~~-~~~~------~~~~E~~~~~W~~~~el~~~~ 119 (157)
T cd03426 62 LPPDSVE---VLGRLPPYYTRSGFVVTPVVGLVPPP-LPLV------LNPDEVAEVFEVPLSFLLDPA 119 (157)
T ss_pred CCccceE---EEEECCCccccCCCEEEEEEEEECCC-CCCC------CCHHHhheeEEEcHHHHhCcC
Confidence 9987765 665533221 122223333333211 1222 456699999999999999863
No 23
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.72 E-value=6.4e-17 Score=133.57 Aligned_cols=113 Identities=23% Similarity=0.376 Sum_probs=83.1
Q ss_pred CCcccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhC
Q 022346 125 SPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG 204 (298)
Q Consensus 125 ~~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG 204 (298)
..++|++++. .+|+|||+||... .+.|+|.+|||++|.||+ +.+||+||++||||
T Consensus 9 p~~~v~~~i~-~~~~iLLvrR~~~--p~~g~WalPGG~ve~GEt----------------------~eeaa~REl~EETg 63 (145)
T COG1051 9 PLVAVGALIV-RNGRILLVRRANE--PGAGYWALPGGFVEIGET----------------------LEEAARRELKEETG 63 (145)
T ss_pred cceeeeEEEE-eCCEEEEEEecCC--CCCCcEeCCCccCCCCCC----------------------HHHHHHHHHHHHhC
Confidence 3556666665 6669999999987 678999999999999999 67999999999999
Q ss_pred CCCCCCCCCeeEEeeccccc---CCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchhc
Q 022346 205 VPSESLCNPLFIGISRRRLN---VRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMAS 271 (298)
Q Consensus 205 l~~~~~~~p~~l~~~~~~~~---~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~ 271 (298)
|.+..+. ++++...... .+.+.++|+.+.... +.. ..+.++...+.|++.+++..+..
T Consensus 64 L~~~~~~---~~~v~~~~~rd~r~~~v~~~~~~~~~~g-~~~-----~~~~~d~~~~~~~~~~~l~~~~~ 124 (145)
T COG1051 64 LRVRVLE---LLAVFDDPGRDPRGHHVSFLFFAAEPEG-ELL-----AGDGDDAAEVGWFPLDELPELPL 124 (145)
T ss_pred Cccccee---EEEEecCCCCCCceeEEEEEEEEEecCC-Ccc-----cCChhhHhhcceecHhHcccccc
Confidence 9977776 7777654322 244455556554433 222 13334678899999999997643
No 24
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.71 E-value=9.3e-17 Score=130.63 Aligned_cols=116 Identities=22% Similarity=0.220 Sum_probs=80.2
Q ss_pred EEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCCCCCC
Q 022346 133 VETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLCN 212 (298)
Q Consensus 133 l~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~~~~ 212 (298)
++..+|+|||++|+... ++|.|.+|||++|++|+ +.+||+||++||||+.+....
T Consensus 7 ~i~~~~~vLL~~r~~~~--~~~~w~~PgG~ve~gEs----------------------~~~aa~RE~~EEtGl~~~~~~- 61 (137)
T cd03427 7 FIKDPDKVLLLNRKKGP--GWGGWNGPGGKVEPGET----------------------PEECAIRELKEETGLTIDNLK- 61 (137)
T ss_pred EEEECCEEEEEEecCCC--CCCeEeCCceeCCCCCC----------------------HHHHHHHHHHHhhCeEeecce-
Confidence 34466999999999763 68999999999999998 479999999999999987766
Q ss_pred CeeEEeecccccC--CceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchhccCCCCchhHHHHH
Q 022346 213 PLFIGISRRRLNV--RPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMASKMPGCHQGGFALY 284 (298)
Q Consensus 213 p~~l~~~~~~~~~--~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~~~~~~~~g~~~~y 284 (298)
+++........ .....+++.+....+.+. +..|..++.|++++++.++ .+.+.++-.+..|
T Consensus 62 --~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-------~~~e~~~~~W~~~~el~~~--~~~~~~~~~l~~~ 124 (137)
T cd03427 62 --LVGIIKFPFPGEEERYGVFVFLATEFEGEPL-------KESEEGILDWFDIDDLPLL--PMWPGDREWLPLM 124 (137)
T ss_pred --EEEEEEEEcCCCCcEEEEEEEEECCcccccC-------CCCccccceEEcHhhcccc--cCCCCcHHHHHHH
Confidence 56654332222 333444555654444332 2346678999999999865 3444444334433
No 25
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.71 E-value=1e-16 Score=128.39 Aligned_cols=113 Identities=19% Similarity=0.333 Sum_probs=80.4
Q ss_pred EEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCCC
Q 022346 130 GAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSES 209 (298)
Q Consensus 130 ~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~ 209 (298)
+++|.+.+|++||.||... +.++|+|+||||+++++|+ +.+++.||+.||||+.+..
T Consensus 8 ~~ii~~~~~~vll~rR~~~-~~~~g~w~~PgG~~~~gE~----------------------~~~a~~Re~~EE~gl~~~~ 64 (129)
T PRK10776 8 VGIIRNPNNEIFITRRAAD-AHMAGKWEFPGGKIEAGET----------------------PEQALIRELQEEVGITVQH 64 (129)
T ss_pred EEEEECCCCEEEEEEecCC-CCCCCeEECCceecCCCCC----------------------HHHHHHHHHHHHHCCceec
Confidence 4456667789999999876 3689999999999999998 4699999999999998765
Q ss_pred CCCCeeEEeecccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchhccCCCCch
Q 022346 210 LCNPLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMASKMPGCHQ 278 (298)
Q Consensus 210 ~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~~~~~~~~ 278 (298)
.. +++...+.++++....+++.+....+.. ...|..++.|++++++..+ .+|...+
T Consensus 65 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~e~~~~~W~~~~~l~~~--~~p~~~~ 120 (129)
T PRK10776 65 AT---LFEKLEYEFPDRHITLWFWLVESWEGEP--------WGKEGQPGRWVSQVALNAD--EFPPANE 120 (129)
T ss_pred ce---EEEEEEeeCCCcEEEEEEEEEEEECCcc--------CCccCCccEEecHHHCccC--CCCcccH
Confidence 44 5555555555544444444443322221 1236678899999999875 4665444
No 26
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.71 E-value=8.1e-17 Score=134.87 Aligned_cols=117 Identities=16% Similarity=0.166 Sum_probs=83.0
Q ss_pred CcccEEEEEeCCCeEEEEEecCCCCCCCCcEEcC-CcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhC
Q 022346 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFP-GGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG 204 (298)
Q Consensus 126 ~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~P-GG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG 204 (298)
-.+|+++|++.+|+|||+||+.....+||+|++| ||++++||. +||+||++||||
T Consensus 27 h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE~------------------------eaa~REl~EE~G 82 (158)
T TIGR02150 27 HRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGEL------------------------EAAIRRLREELG 82 (158)
T ss_pred EEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCcccH------------------------HHHHHHHHHHHC
Confidence 4566788888999999999998766799999997 899999994 999999999999
Q ss_pred CCCCCCCCCeeEEeecc--cc-cCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchhccCC
Q 022346 205 VPSESLCNPLFIGISRR--RL-NVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMASKMP 274 (298)
Q Consensus 205 l~~~~~~~p~~l~~~~~--~~-~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~~~~ 274 (298)
|.+.... ...++.... .+ .+.....++|.+.... ++. ++..|+.++.|++++++..+...-+
T Consensus 83 l~~~~~~-l~~~~~~~~~~~~~~g~~~~~~~f~~~~~~-~~~------~~~~Ev~~~~W~~~~el~~~~~~~~ 147 (158)
T TIGR02150 83 IPADDVP-LTVLPRFSYRARDAWGEHELCPVFFARAPV-PLN------PNPEEVAEYRWVSLEELKEILKAPW 147 (158)
T ss_pred CCccccc-eEEcceEEEEEecCCCcEEEEEEEEEecCC-ccc------CChhHeeeEEEeCHHHHHHHHhcCc
Confidence 9887654 112222111 11 1222233344444332 233 4556999999999999999876444
No 27
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.71 E-value=5.7e-17 Score=130.38 Aligned_cols=109 Identities=22% Similarity=0.256 Sum_probs=77.3
Q ss_pred cccEEEEEeCC---CeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhh
Q 022346 127 LGNGAVVETSD---KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEI 203 (298)
Q Consensus 127 ~gV~~vl~~~d---g~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEt 203 (298)
+++++|+++.+ ++|||+||... |.|.||||+++++|+ +.+||.||++|||
T Consensus 2 ~~a~~ii~~~~~~~~~vLl~~~~~~-----~~w~~PgG~v~~gEs----------------------~~~aa~REl~EEt 54 (131)
T cd03673 2 LAAGGVVFRGSDGGIEVLLIHRPRG-----DDWSLPKGKLEPGET----------------------PPEAAVREVEEET 54 (131)
T ss_pred eeEEEEEEEccCCCeEEEEEEcCCC-----CcccCCCCccCCCCC----------------------HHHHHHHHHhhhh
Confidence 35677777665 89999999754 799999999999998 5799999999999
Q ss_pred CCCCCCCCCCeeEEeeccccc----CCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchh
Q 022346 204 GVPSESLCNPLFIGISRRRLN----VRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMA 270 (298)
Q Consensus 204 Gl~~~~~~~p~~l~~~~~~~~----~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~ 270 (298)
|+.+..+. +++....... ......+||.+.....++.. .+..|..++.|++++++.++.
T Consensus 55 Gl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~E~~~~~W~~~~el~~~~ 117 (131)
T cd03673 55 GIRAEVGD---PLGTIRYWFSSSGKRVHKTVHWWLMRALGGEFTP-----QPDEEVDEVRWLPPDEARDRL 117 (131)
T ss_pred CCceEecc---eEEEEEEeccCCCCCcceEEEEEEEEEcCCCccc-----CCCCcEEEEEEcCHHHHHHHc
Confidence 99887665 4544322221 22233444444444333320 146688999999999998764
No 28
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.70 E-value=5.4e-16 Score=133.16 Aligned_cols=134 Identities=18% Similarity=0.226 Sum_probs=89.9
Q ss_pred cccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCC
Q 022346 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (298)
Q Consensus 127 ~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (298)
-+|+++.++.++++||+|+.+. +..++.|+||||++|+||+ .++||+||++||||+.
T Consensus 48 ~~v~v~~~~~~~~vlLvrq~r~-~~~~~~~elPaG~ve~gE~----------------------~~~aA~REl~EEtG~~ 104 (185)
T PRK11762 48 GAVMIVPILDDDTLLLIREYAA-GTERYELGFPKGLIDPGET----------------------PLEAANRELKEEVGFG 104 (185)
T ss_pred CEEEEEEEeCCCEEEEEEeecC-CCCCcEEEccceeCCCCCC----------------------HHHHHHHHHHHHHCCC
Confidence 3466666778889999999866 3678889999999999998 4799999999999999
Q ss_pred CCCCCCCeeEEeecccccCCceEEEEEEe-cCChhhHHhhhccCCCCCcccceEEEcHHHHhchhccCCC-CchhHHHHH
Q 022346 207 SESLCNPLFIGISRRRLNVRPAAFFFIKC-SLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMASKMPG-CHQGGFALY 284 (298)
Q Consensus 207 ~~~~~~p~~l~~~~~~~~~~~~~~~~~~~-~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~~~~~-~~~g~~~~y 284 (298)
+..+. +++.............++|.+ ....... ..+..|..++.|++++++.++...... +++..+++|
T Consensus 105 ~~~l~---~l~~~~~~~~~~~~~~~~f~a~~~~~~~~------~~~e~E~i~~~~~~~~e~~~~~~~g~i~d~~ti~al~ 175 (185)
T PRK11762 105 ARQLT---FLKELSLAPSYFSSKMNIVLAEDLYPERL------EGDEPEPLEVVRWPLADLDELLARPDFSEARSVAALF 175 (185)
T ss_pred CcceE---EEEEEecCCCccCcEEEEEEEEccccccC------CCCCCceeEEEEEcHHHHHHHHHcCCCCcHHHHHHHH
Confidence 98876 666543222211222222222 2211111 145667889999999999998865444 566555554
Q ss_pred HHHHHHHhh
Q 022346 285 KLMVEAMNN 293 (298)
Q Consensus 285 ~~~~~~~~~ 293 (298)
.....+++
T Consensus 176 -~~~~~l~~ 183 (185)
T PRK11762 176 -LAREWLKQ 183 (185)
T ss_pred -HHHHHHhc
Confidence 33333443
No 29
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=1.4e-16 Score=127.77 Aligned_cols=107 Identities=21% Similarity=0.289 Sum_probs=75.3
Q ss_pred cccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCC
Q 022346 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (298)
Q Consensus 127 ~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (298)
++|++++++.+|+|||+||.. ++|.|.+|||++|++|+ +.+||+||++||||+.
T Consensus 3 ~~v~~~i~~~~~~iLL~r~~~----~~~~w~lPGG~ve~gEs----------------------~~~aa~REl~EEtGl~ 56 (125)
T cd04696 3 VTVGALIYAPDGRILLVRTTK----WRGLWGVPGGKVEWGET----------------------LEEALKREFREETGLK 56 (125)
T ss_pred cEEEEEEECCCCCEEEEEccC----CCCcEeCCceeccCCCC----------------------HHHHHHHHHHHHhCCc
Confidence 467788888799999998763 36999999999999998 4799999999999999
Q ss_pred CCCCCCCeeEEeecccc----cC-CceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 207 SESLCNPLFIGISRRRL----NV-RPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 207 ~~~~~~p~~l~~~~~~~----~~-~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
+.... +++.....+ .. .....+.+.+.....++. ...|..++.|++++++.++
T Consensus 57 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~e~~~~~W~~~~el~~~ 114 (125)
T cd04696 57 LRDIK---FAMVQEAIFSEEFHKPAHFVLFDFFARTDGTEVT-------PNEEIVEWEWVTPEEALDY 114 (125)
T ss_pred ccccc---eEEEEEEeccCCCCCccEEEEEEEEEEecCCccc-------CCcccceeEEECHHHHhcC
Confidence 87765 444322111 11 111122233333332332 2358899999999999976
No 30
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=1.1e-16 Score=131.74 Aligned_cols=120 Identities=18% Similarity=0.200 Sum_probs=82.1
Q ss_pred cccEEEEEeCC---CeEEEEEecCCCCCCCCcEEc-CCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhh
Q 022346 127 LGNGAVVETSD---KKILLLQRSNNVGEFPGHFVF-PGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEE 202 (298)
Q Consensus 127 ~gV~~vl~~~d---g~vLl~rRs~~~~~~~g~w~~-PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EE 202 (298)
.+|.++|++.+ ++||+++|+.....+||.|++ |||++|++|+ +.+||+||++||
T Consensus 3 ~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt----------------------~~~aa~REl~EE 60 (144)
T cd04692 3 RTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGET----------------------PLEDGIRELEEE 60 (144)
T ss_pred eEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCC----------------------HHHHHHHHHHHH
Confidence 35667788877 899999999876678999999 5999999998 469999999999
Q ss_pred hCCCCCCCCCCeeEEeeccccc--C---CceEEEEEEecCCh--hhHHhhhccCCCCCcccceEEEcHHHHhchhccCCC
Q 022346 203 IGVPSESLCNPLFIGISRRRLN--V---RPAAFFFIKCSLQS--NEIQQLYSTAQDGYESTQLFAVSMIELENMASKMPG 275 (298)
Q Consensus 203 tGl~~~~~~~p~~l~~~~~~~~--~---~~~~~~~~~~~~~~--~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~~~~~ 275 (298)
|||.+.... ..+++....... + .....+++.+.... +.+. .+..|+.++.|++++++.++....|.
T Consensus 61 tGl~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~------~~~~E~~~~~W~~~~el~~~~~~~~~ 133 (144)
T cd04692 61 LGLDVSADD-LIPLGTFKIEYDHIGKLIDREFHHVYLYELKVPLEEFT------LQKEEVAGVVLIPLDEFAELLEEEDH 133 (144)
T ss_pred hCCCCChHH-eEEeeEEEEeccccCCCccceEEEEEEEeccCChhhcC------CChhHhheEEEECHHHHHHHHHcCCC
Confidence 999875321 114444322211 1 11111222232222 2222 45569999999999999998866554
No 31
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.70 E-value=1.7e-16 Score=128.68 Aligned_cols=106 Identities=22% Similarity=0.304 Sum_probs=75.3
Q ss_pred cEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCC
Q 022346 129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE 208 (298)
Q Consensus 129 V~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~ 208 (298)
|.+++.+.+++|||+||+.. .+|.|.+|||++|+||+ +.+||+||++|||||.+.
T Consensus 3 v~i~l~~~~~~vLL~~r~~~---~~~~w~lPgG~ie~gEt----------------------~~~aA~REl~EEtGl~~~ 57 (131)
T cd03429 3 VIVLVIDGGDRILLARQPRF---PPGMYSLLAGFVEPGES----------------------LEEAVRREVKEEVGIRVK 57 (131)
T ss_pred EEEEEEeCCCEEEEEEecCC---CCCcCcCCcccccCCCC----------------------HHHHHhhhhhhccCceee
Confidence 34455555589999999754 26999999999999998 579999999999999987
Q ss_pred CCCCCeeEEeecccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchh
Q 022346 209 SLCNPLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMA 270 (298)
Q Consensus 209 ~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~ 270 (298)
.+. +++....... ....++|.+....+++. .+..|+.++.|++++++.++.
T Consensus 58 ~~~---~l~~~~~~~~--~~~~~~f~~~~~~~~~~------~~~~E~~~~~w~~~~el~~~~ 108 (131)
T cd03429 58 NIR---YVGSQPWPFP--SSLMLGFTAEADSGEIV------VDDDELEDARWFSRDEVRAAG 108 (131)
T ss_pred eeE---EEeecCCCCC--ceEEEEEEEEEcCCccc------CCchhhhccEeecHHHHhhcc
Confidence 665 5554322222 11222333433333333 456688999999999999873
No 32
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.69 E-value=2.5e-16 Score=130.06 Aligned_cols=134 Identities=17% Similarity=0.225 Sum_probs=84.2
Q ss_pred cEEEEEeCC-CeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCC
Q 022346 129 NGAVVETSD-KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS 207 (298)
Q Consensus 129 V~~vl~~~d-g~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~ 207 (298)
+++++++.+ ++|||+||... +.|+||||++|+||+ +.+||+||++||||+.+
T Consensus 4 ~gaii~~~~~~~vLLvr~~~~-----~~W~lPGG~ve~gEs----------------------~~~AA~REl~EETGl~v 56 (145)
T cd03672 4 YGAIILNEDLDKVLLVKGWKS-----KSWSFPKGKINKDED----------------------DHDCAIREVYEETGFDI 56 (145)
T ss_pred eEEEEEeCCCCEEEEEEecCC-----CCEECCCccCCCCcC----------------------HHHHHHHHHHHhhCccc
Confidence 466777665 69999998643 489999999999998 46999999999999987
Q ss_pred CCCCCCeeEEeecccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchhccC-CC---C-chhHHH
Q 022346 208 ESLCNPLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMASKM-PG---C-HQGGFA 282 (298)
Q Consensus 208 ~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~~~-~~---~-~~g~~~ 282 (298)
...... ..............+|++ ......... ...+..|+.++.|++++++.++..++ ++ + .+=...
T Consensus 57 ~~~~~~--~~~~~~~~~~~~~~~f~~-~~~~~~~~~----~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~~~~~~~ 129 (145)
T cd03672 57 SKYIDK--DDYIELIIRGQNVKLYIV-PGVPEDTPF----EPKTRKEISKIEWFDIKDLPTKKNKKIPGLNSNKFFMVIP 129 (145)
T ss_pred eecccc--ceeeecccCCcEEEEEEE-ecCCCCccc----CcCChhhhheEEEeeHHHhhhhhhhccccccccceEEEhH
Confidence 653210 001111111222223322 212111100 01234689999999999999988654 11 2 222356
Q ss_pred HHHHHHHHHhhCCC
Q 022346 283 LYKLMVEAMNNIPQ 296 (298)
Q Consensus 283 ~y~~~~~~~~~~~~ 296 (298)
+|..+++-++.+++
T Consensus 130 ~~~~~~~~~~~~~~ 143 (145)
T cd03672 130 FIKPLKKWINRQKG 143 (145)
T ss_pred HHHHHHHHHHHhhc
Confidence 67777777777665
No 33
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.69 E-value=3.6e-16 Score=126.76 Aligned_cols=110 Identities=23% Similarity=0.273 Sum_probs=75.7
Q ss_pred ccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCC
Q 022346 128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS 207 (298)
Q Consensus 128 gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~ 207 (298)
+|++++. .++++||+||... .++.|.+|||++|++|+ +.+||.||++||||+.+
T Consensus 2 ~v~~ii~-~~~~vLlv~r~~~---~~~~w~~PgG~ve~gEs----------------------~~~aa~REl~EEtGl~~ 55 (134)
T cd03675 2 TVAAVVE-RDGRFLLVEEETD---GGLVFNQPAGHLEPGES----------------------LIEAAVRETLEETGWHV 55 (134)
T ss_pred eEEEEEE-ECCEEEEEEEccC---CCceEECCCccCCCCCC----------------------HHHHHHHHHHHHHCccc
Confidence 4666655 7889999999765 46899999999999998 46999999999999998
Q ss_pred CCCCCCeeEEeeccccc--CCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchhc
Q 022346 208 ESLCNPLFIGISRRRLN--VRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMAS 271 (298)
Q Consensus 208 ~~~~~p~~l~~~~~~~~--~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~ 271 (298)
.... +++....... ......++|.+........ .....|+.++.|++++++..+..
T Consensus 56 ~~~~---~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-----~~~~~e~~~~~w~~~~el~~~~~ 113 (134)
T cd03675 56 EPTA---LLGIYQWTAPDSDTTYLRFAFAAELLEHLPD-----QPLDSGIVRAHWLTLEEILALAA 113 (134)
T ss_pred ccce---EEEEEEeecCCCCeeEEEEEEEEEECCCCCC-----CCCCCCceeeEEEeHHHHHhhhh
Confidence 7655 5554332211 1222222233333322111 12235889999999999998864
No 34
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=1.5e-16 Score=127.70 Aligned_cols=106 Identities=22% Similarity=0.351 Sum_probs=76.8
Q ss_pred cEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCC
Q 022346 129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE 208 (298)
Q Consensus 129 V~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~ 208 (298)
|++++++.+|+|||+||... ..++.|.+|||++|++|+ +.+||+||++||||+.+.
T Consensus 3 ~~~vv~~~~~~vLl~~r~~~--~~~~~w~lPgG~ve~gEt----------------------~~~aa~REl~EEtG~~~~ 58 (123)
T cd04671 3 VAAVILNNQGEVLLIQEAKR--SCRGKWYLPAGRMEPGET----------------------IEEAVKREVKEETGLDCE 58 (123)
T ss_pred EEEEEEcCCCEEEEEEecCC--CCCCeEECceeecCCCCC----------------------HHHHHHHHHHHHHCCeee
Confidence 46777878899999999865 458999999999999998 479999999999999987
Q ss_pred CCCCCeeEEeecccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHh
Q 022346 209 SLCNPLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELE 267 (298)
Q Consensus 209 ~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~ 267 (298)
... ++++.... . ....++|.+....+++.. ...+..|+.++.|++++++.
T Consensus 59 ~~~---~~~~~~~~--~-~~~~~~f~a~~~~g~~~~---~~~~~~e~~~~~W~~~~el~ 108 (123)
T cd04671 59 PTT---LLSVEEQG--G-SWFRFVFTGNITGGDLKT---EKEADSESLQARWYSNKDLP 108 (123)
T ss_pred cce---EEEEEccC--C-eEEEEEEEEEEeCCeEcc---CCCCCcceEEEEEECHHHCC
Confidence 765 66553221 1 122334455555444321 01234578899999999994
No 35
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.69 E-value=5.2e-16 Score=128.29 Aligned_cols=112 Identities=21% Similarity=0.283 Sum_probs=77.4
Q ss_pred CcccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCC
Q 022346 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (298)
Q Consensus 126 ~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (298)
..+|++++++.+++|||+||+... |.|.+|||++|++|+ +.+||+||++||||+
T Consensus 3 ~~~v~~ii~~~~~~vLL~~r~~~~----~~W~~PgG~~e~gE~----------------------~~~aA~REv~EEtGl 56 (147)
T cd03671 3 RPNVGVVLFNEDGKVFVGRRIDTP----GAWQFPQGGIDEGED----------------------PEQAALRELEEETGL 56 (147)
T ss_pred CceEEEEEEeCCCEEEEEEEcCCC----CCEECCcCCCCCCcC----------------------HHHHHHHHHHHHHCC
Confidence 467888999899999999998763 899999999999998 579999999999999
Q ss_pred CCCCCCCCeeEEeec----cccc-------------CCceEEEEEEecCChhhHHhhhccCC-CCCcccceEEEcHHHHh
Q 022346 206 PSESLCNPLFIGISR----RRLN-------------VRPAAFFFIKCSLQSNEIQQLYSTAQ-DGYESTQLFAVSMIELE 267 (298)
Q Consensus 206 ~~~~~~~p~~l~~~~----~~~~-------------~~~~~~~~~~~~~~~~ev~~~~~~~~-d~~E~~~~~wv~~~el~ 267 (298)
.+.... +++... .... +....+|.+........+. ... +..|+.++.|++++++.
T Consensus 57 ~~~~~~---~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----l~~~~~~E~~~~~W~~~~el~ 129 (147)
T cd03671 57 DPDSVE---IIAEIPDWLRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEID----LNAPEHPEFDEWRWVPLEELP 129 (147)
T ss_pred CcCceE---EEEEcCCeeEeeChhhhhccccCCcCCCEEEEEEEEEecCCCcccc----CCCCCCCCEeeEEeCCHHHHH
Confidence 987654 444321 0000 1111222222221112222 012 35699999999999999
Q ss_pred chh
Q 022346 268 NMA 270 (298)
Q Consensus 268 ~l~ 270 (298)
++.
T Consensus 130 ~~~ 132 (147)
T cd03671 130 DLI 132 (147)
T ss_pred Hhc
Confidence 763
No 36
>PLN02325 nudix hydrolase
Probab=99.69 E-value=1.9e-16 Score=130.61 Aligned_cols=116 Identities=16% Similarity=0.171 Sum_probs=80.0
Q ss_pred ccCCcccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhh
Q 022346 123 TASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEE 202 (298)
Q Consensus 123 ~~~~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EE 202 (298)
....++|.++++ .+|+|||+||... ...|.|.+|||++|++|+ +.+||+||++||
T Consensus 6 ~~p~~~v~~vi~-~~~~vLL~rr~~~--~~~g~W~lPGG~ve~gEs----------------------~~~aa~REv~EE 60 (144)
T PLN02325 6 PIPRVAVVVFLL-KGNSVLLGRRRSS--IGDSTFALPGGHLEFGES----------------------FEECAAREVKEE 60 (144)
T ss_pred CCCeEEEEEEEE-cCCEEEEEEecCC--CCCCeEECCceeCCCCCC----------------------HHHHHHHHHHHH
Confidence 344677777777 5689999999865 346899999999999999 579999999999
Q ss_pred hCCCCCCCCCCeeEEeeccccc--C--CceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 203 IGVPSESLCNPLFIGISRRRLN--V--RPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 203 tGl~~~~~~~p~~l~~~~~~~~--~--~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
||+.+.... ++++..+... . .....+++.+........ ....+.+|+.++.|+++++|...
T Consensus 61 tGl~v~~~~---~l~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~---~~~~e~~e~~~~~W~~~d~Lp~~ 125 (144)
T PLN02325 61 TGLEIEKIE---LLTVTNNVFLEEPKPSHYVTVFMRAVLADPSQV---PQNLEPEKCYGWDWYEWDNLPEP 125 (144)
T ss_pred HCCCCcceE---EEEEecceeecCCCCcEEEEEEEEEEECCCCCC---CCcCCchhcCceEEEChHHCChh
Confidence 999988766 7776543221 1 112233444433322211 01134557788999999999853
No 37
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.68 E-value=1.7e-16 Score=126.95 Aligned_cols=109 Identities=22% Similarity=0.268 Sum_probs=75.1
Q ss_pred cEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCC
Q 022346 129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE 208 (298)
Q Consensus 129 V~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~ 208 (298)
+++++++.+|+|||+||... ..++|.||||++|++|+ +.+||+||++||||+.+.
T Consensus 3 ~~~ii~~~~~~vLL~~r~~~---~~~~w~lPGG~ve~gEs----------------------~~~a~~REl~EEtGl~~~ 57 (121)
T cd04669 3 ASIVIINDQGEILLIRRIKP---GKTYYVFPGGGIEEGET----------------------PEEAAKREALEELGLDVR 57 (121)
T ss_pred eEEEEEeCCCEEEEEEEecC---CCCcEECCceeccCCCC----------------------HHHHHHHHHHHhhCeeEe
Confidence 56777766699999999754 25899999999999998 579999999999999985
Q ss_pred CCCCCeeEEeecccccCCceEEEEEEecCChhhHHhhhcc---CCCCCcccceEEEcHHHHhch
Q 022346 209 SLCNPLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYST---AQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 209 ~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~---~~d~~E~~~~~wv~~~el~~l 269 (298)
... ++++... .+. ..++|.|....+++...... ..+..+..++.||+++++..+
T Consensus 58 ~~~---~~~~~~~--~~~--~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l 114 (121)
T cd04669 58 VEE---IFLIVNQ--NGR--TEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETI 114 (121)
T ss_pred eee---EEEEEee--CCc--EEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccC
Confidence 544 5555432 122 23455555544443211000 012335668999999999976
No 38
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.68 E-value=5.1e-16 Score=125.74 Aligned_cols=105 Identities=20% Similarity=0.210 Sum_probs=68.1
Q ss_pred eCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCCCCCCCe
Q 022346 135 TSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLCNPL 214 (298)
Q Consensus 135 ~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~~~~p~ 214 (298)
..++++||+||+.. ++|.|.+|||++|+||++ .+||+||++||||+.+..+..-.
T Consensus 11 ~~~~~vLl~~r~~~---~~g~w~~PgG~ve~gEs~----------------------~~aa~RE~~EEtGl~~~~~~~~~ 65 (131)
T cd04695 11 DKETKVLLLKRVKT---LGGFWCHVAGGVEAGETA----------------------WQAALRELKEETGISLPELYNAD 65 (131)
T ss_pred CCCCEEEEEEecCC---CCCcEECCcccccCCCCH----------------------HHHHHHHHHHHhCCCcccccccc
Confidence 46789999999865 579999999999999984 69999999999999886543111
Q ss_pred eEEeecccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchh
Q 022346 215 FIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMA 270 (298)
Q Consensus 215 ~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~ 270 (298)
.+..............+++.+........ ....|+.++.|++++++.++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~~~E~~~~~W~~~~e~~~~~ 115 (131)
T cd04695 66 YLEQFYEANDNRILMAPVFVGFVPPHQEV------VLNHEHTEYRWCSFAEALELA 115 (131)
T ss_pred ceeeEeecCCceEEEEEEEEEEecCCCcc------ccCchhcccEecCHHHHHHhc
Confidence 11111111111122222222222222111 123589999999999999763
No 39
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.68 E-value=2.4e-16 Score=127.21 Aligned_cols=109 Identities=24% Similarity=0.406 Sum_probs=77.5
Q ss_pred CcccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCC
Q 022346 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (298)
Q Consensus 126 ~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (298)
..++++++++.+++|||++|+.. |.|.||||+++++|+ +.+||+||++||||+
T Consensus 7 ~~~~~~~v~~~~~~vLL~~r~~~-----~~w~~PgG~v~~gEt----------------------~~~aa~REl~EE~Gi 59 (132)
T cd04677 7 LVGAGVILLNEQGEVLLQKRSDT-----GDWGLPGGAMELGES----------------------LEETARRELKEETGL 59 (132)
T ss_pred ccceEEEEEeCCCCEEEEEecCC-----CcEECCeeecCCCCC----------------------HHHHHHHHHHHHhCC
Confidence 56777888888899999998754 789999999999998 479999999999999
Q ss_pred CCCCCCCCeeEEeeccc--c----cCC--ceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchh
Q 022346 206 PSESLCNPLFIGISRRR--L----NVR--PAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMA 270 (298)
Q Consensus 206 ~~~~~~~p~~l~~~~~~--~----~~~--~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~ 270 (298)
.+.... ++++.... + .+. ....+|+.+......+. .+..|..++.|++++++.++.
T Consensus 60 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~e~~~~~W~~~~e~~~~~ 123 (132)
T cd04677 60 EVEELE---LLGVYSGKEFYVKPNGDDEQYIVTLYYVTKVFGGKLV------PDGDETLELKFFSLDELPELI 123 (132)
T ss_pred eeeeeE---EEEEecCCceeecCCCCcEEEEEEEEEEEeccCCccc------CCCCceeeEEEEChhHCccch
Confidence 987765 55443111 1 111 12223444433333322 345688999999999998764
No 40
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.67 E-value=3e-16 Score=126.48 Aligned_cols=109 Identities=21% Similarity=0.220 Sum_probs=76.8
Q ss_pred ccEEEEEeC--CCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCC
Q 022346 128 GNGAVVETS--DKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (298)
Q Consensus 128 gV~~vl~~~--dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (298)
.|.+++.+. +++|||+||+.. ++|.|.+|||++|++|+ +.+||+||++|||||
T Consensus 3 ~~~v~~~~~~~~~~vLL~~r~~~---~~~~w~~PgG~ve~~Es----------------------~~~aa~RE~~EE~Gl 57 (129)
T cd04664 3 SVLVVPYRLTGEGRVLLLRRSDK---YAGFWQSVTGGIEDGES----------------------PAEAARREVAEETGL 57 (129)
T ss_pred EEEEEEEEeCCCCEEEEEEeCCC---CCCcccccCcccCCCCC----------------------HHHHHHHHHHHHHCC
Confidence 456777777 899999999875 68999999999999999 479999999999999
Q ss_pred CCCCCCCCeeEEeec----ccccC--CceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchh
Q 022346 206 PSESLCNPLFIGISR----RRLNV--RPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMA 270 (298)
Q Consensus 206 ~~~~~~~p~~l~~~~----~~~~~--~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~ 270 (298)
.+.... ++.... ..... .....++|.+........ ....|+.++.|++++++.++.
T Consensus 58 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~~~E~~~~~W~~~~e~~~~~ 119 (129)
T cd04664 58 DPERLT---LLDRGASIAFVEFTDNGRVWTEHPFAFHLPSDAVV------TLDWEHDAFEWVPPEEAAALL 119 (129)
T ss_pred ChhheE---EEeecccccccccCCCceEEEEeEEEEEcCCCCcc------cCCccccccEecCHHHHHHHH
Confidence 886554 444322 11111 222333444444433211 234588999999999998763
No 41
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=2.5e-16 Score=126.32 Aligned_cols=112 Identities=21% Similarity=0.312 Sum_probs=77.0
Q ss_pred cccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCC
Q 022346 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (298)
Q Consensus 127 ~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (298)
++|+++|.+.+|+|||+||......++|+|+||||++|++|++ .+||+||++||||+.
T Consensus 2 ~~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~----------------------~~aa~RE~~EE~Gl~ 59 (129)
T cd04699 2 VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETF----------------------EEALKREVYEETGLT 59 (129)
T ss_pred ceEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCH----------------------HHHHHHHHHHhhCcE
Confidence 4667777777699999999877434689999999999999984 699999999999998
Q ss_pred CCCCCCCeeEE-eecccccC-CceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchh
Q 022346 207 SESLCNPLFIG-ISRRRLNV-RPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMA 270 (298)
Q Consensus 207 ~~~~~~p~~l~-~~~~~~~~-~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~ 270 (298)
+.... +++ ...+..+. .....+++.+....... .+..|..++.|++++++..+.
T Consensus 60 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~e~~~~~w~~~~el~~~~ 115 (129)
T cd04699 60 VTPFL---RYPSTVTHEDSGVYNVIYLVFVCEALSGAV-------KLSDEHEEYAWVTLEELAILK 115 (129)
T ss_pred EEeee---eeeEEEEEcCCCEEEEEEEEEEeeecCCcc-------cCChhheEEEEecHHHhhhhh
Confidence 86654 322 22222221 22233334443222211 234588899999999987554
No 42
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.67 E-value=4.1e-16 Score=131.45 Aligned_cols=118 Identities=19% Similarity=0.250 Sum_probs=83.8
Q ss_pred CcccEEEEEeCCCeEEEEEecCCCCCCCCcEEcC-CcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhC
Q 022346 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFP-GGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG 204 (298)
Q Consensus 126 ~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~P-GG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG 204 (298)
..+|++++++.+|+|||+||+.....+||.|++| ||++|+||+ +.+||+||++||||
T Consensus 30 ~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt----------------------~~eaa~REl~EEtG 87 (165)
T cd02885 30 HRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEG----------------------VKDAAQRRLREELG 87 (165)
T ss_pred eeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCC----------------------HHHHHHHHHHHHhC
Confidence 4566778888999999999998766799999996 899999999 46999999999999
Q ss_pred CCCCCCCCCeeE-Eeeccc--ccC---CceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchhccCCC
Q 022346 205 VPSESLCNPLFI-GISRRR--LNV---RPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMASKMPG 275 (298)
Q Consensus 205 l~~~~~~~p~~l-~~~~~~--~~~---~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~~~~~ 275 (298)
|.+.... ++ +..... ... .....++|.+.... +.. .+.+|+.++.|++++++.++....+.
T Consensus 88 l~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~-~~~------~~~~Ev~~~~w~~~~el~~~~~~~~~ 154 (165)
T cd02885 88 ITGDLLE---LVLPRFRYRAPDDGGLVEHEIDHVFFARADV-TLI------PNPDEVSEYRWVSLEDLKELVAAAPE 154 (165)
T ss_pred CCccchh---hccceEEEEEEcCCCceeeEEEEEEEEEeCC-CCC------CCccceeEEEEECHHHHHHHHHhCch
Confidence 9987665 32 222111 111 11122333443332 222 45668999999999999998765543
No 43
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.67 E-value=5.5e-16 Score=133.04 Aligned_cols=119 Identities=21% Similarity=0.259 Sum_probs=83.2
Q ss_pred CcccEEEEEeCCCeEEEEEecCCCCCCCCcEEcC-CcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhC
Q 022346 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFP-GGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG 204 (298)
Q Consensus 126 ~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~P-GG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG 204 (298)
..+|++++++.+|+|||+||+.....+||.|++| ||++|+||+ +.+||+||+.||||
T Consensus 34 h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt----------------------~~~aa~REl~EEtG 91 (184)
T PRK03759 34 HLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGES----------------------LEDAVIRRCREELG 91 (184)
T ss_pred eeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCC----------------------HHHHHHHHHHHHhC
Confidence 4556777888899999999987665689999986 999999998 46999999999999
Q ss_pred CCCCCCCCCeeEEeeccc---ccCC--ceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchhccCCC
Q 022346 205 VPSESLCNPLFIGISRRR---LNVR--PAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMASKMPG 275 (298)
Q Consensus 205 l~~~~~~~p~~l~~~~~~---~~~~--~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~~~~~ 275 (298)
|.+..+.. +++..... .++. ....++|.+... +++. .+..|+.++.|++++++.++....+.
T Consensus 92 l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vf~~~~~-~~~~------~~~~Ev~~~~W~~~~el~~~i~~~~~ 158 (184)
T PRK03759 92 VEITDLEL--VLPDFRYRATDPNGIVENEVCPVFAARVT-SALQ------PNPDEVMDYQWVDPADLLRAVDATPW 158 (184)
T ss_pred CCcccccc--ccceEEEEEecCCCceeeEEEEEEEEEEC-CCCC------CChhHeeeEEEECHHHHHHHHHhCCc
Confidence 98865441 23222111 1111 112223333332 2332 56679999999999999998866554
No 44
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=4.6e-16 Score=124.53 Aligned_cols=107 Identities=20% Similarity=0.341 Sum_probs=76.3
Q ss_pred CcccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCC
Q 022346 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (298)
Q Consensus 126 ~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (298)
.++|+++|++ ++++||++|.. .|.|.+|||+++++|+ +.+||+||++||||+
T Consensus 2 ~~~v~~~i~~-~~~vLL~~~~~-----~~~w~~PGG~ve~gEs----------------------~~~aa~REl~EEtG~ 53 (123)
T cd04672 2 KVDVRAAIFK-DGKILLVREKS-----DGLWSLPGGWADVGLS----------------------PAENVVKEVKEETGL 53 (123)
T ss_pred cceEEEEEEE-CCEEEEEEEcC-----CCcEeCCccccCCCCC----------------------HHHHHHHHHHHHhCC
Confidence 5788888875 58999999975 4899999999999998 579999999999999
Q ss_pred CCCCCCCCeeEEeeccc-cc----CCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchh
Q 022346 206 PSESLCNPLFIGISRRR-LN----VRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMA 270 (298)
Q Consensus 206 ~~~~~~~p~~l~~~~~~-~~----~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~ 270 (298)
.+.... ++++.... +. ......+++.|.....++. .. .|..++.|++++++.++.
T Consensus 54 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~-~E~~~~~W~~~~el~~l~ 113 (123)
T cd04672 54 DVKVRK---LAAVDDRNKHHPPPQPYQVYKLFFLCEILGGEFK------PN-IETSEVGFFALDDLPPLS 113 (123)
T ss_pred eeeEeE---EEEEeccccccCCCCceEEEEEEEEEEecCCccc------CC-CceeeeEEECHHHCcccc
Confidence 874333 55554221 11 1122223455555443332 23 688999999999998764
No 45
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.66 E-value=1.8e-16 Score=127.43 Aligned_cols=114 Identities=28% Similarity=0.380 Sum_probs=81.6
Q ss_pred CcccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCC
Q 022346 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (298)
Q Consensus 126 ~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (298)
..+|++++++.+++|||+||+......+|.|.+|||+++++|+ +.+||+||+.||||+
T Consensus 2 ~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~----------------------~~~aa~REl~EE~g~ 59 (134)
T PF00293_consen 2 RRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGES----------------------PEEAARRELKEETGL 59 (134)
T ss_dssp EEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSH----------------------HHHHHHHHHHHHHSE
T ss_pred CCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCc----------------------hhhhHHhhhhhcccc
Confidence 3578889999999999999998854578999999999999998 579999999999999
Q ss_pred CCCCCCCCeeEEeeccccc-CC--ceEEEEEEecCChh--hHHhhhccCCCCCcccceEEEcHHHHhchh
Q 022346 206 PSESLCNPLFIGISRRRLN-VR--PAAFFFIKCSLQSN--EIQQLYSTAQDGYESTQLFAVSMIELENMA 270 (298)
Q Consensus 206 ~~~~~~~p~~l~~~~~~~~-~~--~~~~~~~~~~~~~~--ev~~~~~~~~d~~E~~~~~wv~~~el~~l~ 270 (298)
.+.... +++....... .. ....+++.+....+ ... .+..|..++.|++++++.++.
T Consensus 60 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~e~~~~~W~~~~el~~~~ 120 (134)
T PF00293_consen 60 DVSPLE---LLGLFSYPSPSGDPEGEIVIFFIAELPSEQSEIQ------PQDEEISEVKWVPPDELLELL 120 (134)
T ss_dssp EEEEEE---EEEEEEEEETTTESSEEEEEEEEEEEEEEESECH------TTTTTEEEEEEEEHHHHHHHH
T ss_pred eecccc---cceeeeecccCCCcccEEEEEEEEEEeCCccccC------CCCccEEEEEEEEHHHhhhch
Confidence 984443 4444332221 11 12222333322322 222 333499999999999999875
No 46
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=9.3e-16 Score=123.00 Aligned_cols=114 Identities=18% Similarity=0.279 Sum_probs=81.1
Q ss_pred cEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCC
Q 022346 129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE 208 (298)
Q Consensus 129 V~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~ 208 (298)
+++++++.+|++||.||... +.++|+|+||||++|++|++ .++++||+.||||+.+.
T Consensus 7 ~~~ii~~~~~~vLl~~R~~~-~~~~g~w~~Pgg~ve~ge~~----------------------~~~~~RE~~EE~g~~~~ 63 (128)
T TIGR00586 7 AVGIIRNENGEIIITRRADG-HMFAKLLEFPGGKEEGGETP----------------------EQAVVRELEEEIGIPQH 63 (128)
T ss_pred EEEEEECCCCEEEEEEEeCC-CCCCCeEECCCcccCCCCCH----------------------HHHHHHHHHHHHCCcce
Confidence 34556677789999999876 47899999999999999984 58999999999999876
Q ss_pred CCCCCeeEEeecccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchhccCCCCch
Q 022346 209 SLCNPLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMASKMPGCHQ 278 (298)
Q Consensus 209 ~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~~~~~~~~ 278 (298)
... +++...+.++++...++++.+....+.. ...|..++.|++++++.++ .+|...+
T Consensus 64 ~~~---~~~~~~h~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~W~~~~~l~~~--~~p~~~~ 120 (128)
T TIGR00586 64 FSE---FEKLEYEFYPRHITLWFWLLERWEGGPP--------GKEGQPEEWWVLVGLLADD--FFPAANP 120 (128)
T ss_pred eee---EEEEEEEECCCcEEEEEEEEEEEcCCCc--------CcccccccEEeCHHHCCcc--CCCCCCH
Confidence 544 4555555555555555555554432221 1235567899999999976 5555433
No 47
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.66 E-value=9.4e-16 Score=125.39 Aligned_cols=111 Identities=21% Similarity=0.278 Sum_probs=73.2
Q ss_pred cccEEEEEeCC-CeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCC
Q 022346 127 LGNGAVVETSD-KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (298)
Q Consensus 127 ~gV~~vl~~~d-g~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (298)
+++++++++.+ ++|||+||+. .|.|.+|||++|+||+ +.+||.||++||||+
T Consensus 3 ~~~~~~v~~~~~~~vLLv~r~~-----~~~w~lPgG~ve~gE~----------------------~~~aa~REl~EEtGl 55 (138)
T cd03674 3 FTASAFVVNPDRGKVLLTHHRK-----LGSWLQPGGHIDPDES----------------------LLEAALRELREETGI 55 (138)
T ss_pred EEEEEEEEeCCCCeEEEEEEcC-----CCcEECCceecCCCCC----------------------HHHHHHHHHHHHHCC
Confidence 46778888887 9999999875 3799999999999999 479999999999999
Q ss_pred CCCCCCCC------eeEEeeccccc---CCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 206 PSESLCNP------LFIGISRRRLN---VRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 206 ~~~~~~~p------~~l~~~~~~~~---~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
.+..+..- ..+........ ......+.|.+....++.. ..+..|..++.|++++++..+
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~-----~~~~~E~~~~~W~~~~el~~~ 123 (138)
T cd03674 56 ELLGLRPLSVLVDLDVHPIDGHPKRGVPGHLHLDLRFLAVAPADDVA-----PPKSDESDAVRWFPLDELASL 123 (138)
T ss_pred CcccceeccccccceeEeecCCCCCCCCCcEEEEEEEEEEccCcccc-----CCCCCcccccEEEcHHHhhhc
Confidence 87655410 01111111110 0111112233433333332 024568899999999999865
No 48
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=8.8e-16 Score=123.65 Aligned_cols=113 Identities=20% Similarity=0.286 Sum_probs=75.4
Q ss_pred cccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCC
Q 022346 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (298)
Q Consensus 127 ~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (298)
+++++|+. .+++|||+||... ..+.|.+|||++|+||+ +.+||+||+.||||+.
T Consensus 2 ~~a~~iv~-~~~~vLl~~r~~~---~~~~~~lPGG~ve~gEt----------------------~~~aa~RE~~EEtGl~ 55 (128)
T cd04687 2 NSAKAVII-KNDKILLIKHHDD---GGVWYILPGGGQEPGET----------------------LEDAAHRECKEEIGID 55 (128)
T ss_pred cEEEEEEE-ECCEEEEEEEEcC---CCCeEECCCcccCCCCC----------------------HHHHHHHHHHHHHCCc
Confidence 35667666 5789999999754 25789999999999998 5799999999999999
Q ss_pred CCCCCCCeeEEeeccc------cc--CCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchh
Q 022346 207 SESLCNPLFIGISRRR------LN--VRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMA 270 (298)
Q Consensus 207 ~~~~~~p~~l~~~~~~------~~--~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~ 270 (298)
+.... ++.+.... +. ......++|.|....+..... ...+..|..++.|++++++.++.
T Consensus 56 v~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~--~~~~~~~~~~~~W~~~~~l~~~~ 122 (128)
T cd04687 56 VEIGP---LLFVREYIGHNPTSELPGHFHQVELMFECKIKSGTPAKT--PSKPDPNQIGVEWLKLKELGDIP 122 (128)
T ss_pred cccCc---EEEEEEEeccCccccCCCceeEEEEEEEEEECCCCcccc--cCCCCCCEEeeEEEcHHHhCccc
Confidence 87665 44432211 01 122333455565544332100 01122355789999999998763
No 49
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.65 E-value=1.3e-15 Score=120.62 Aligned_cols=112 Identities=25% Similarity=0.380 Sum_probs=79.7
Q ss_pred EEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCCC
Q 022346 130 GAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSES 209 (298)
Q Consensus 130 ~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~ 209 (298)
.+++.+.++++||++|+... .++|+|.||||+++++|+ +.++|.||+.||||+.+..
T Consensus 5 ~~~i~~~~~~~Ll~~r~~~~-~~~g~w~~p~G~~~~~e~----------------------~~~~a~Re~~EE~g~~~~~ 61 (124)
T cd03425 5 AAIIIDDDGRILIAQRPAGK-HLGGLWEFPGGKVEPGET----------------------PEQALVRELREELGIEVEV 61 (124)
T ss_pred EEEEECCCCEEEEEEeCCCC-CCCCeEeCCCcccCCCCC----------------------HHHHHHHHHHHhhCcEEec
Confidence 34555666999999998774 789999999999999998 4699999999999998776
Q ss_pred CCCCeeEEeecccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchhccCCCCc
Q 022346 210 LCNPLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMASKMPGCH 277 (298)
Q Consensus 210 ~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~~~~~~~ 277 (298)
.. .++...+.+++.....+++.+....+.. ...|..++.|++++++..+ .++...
T Consensus 62 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~e~~~~~W~~~~el~~~--~~~~~~ 116 (124)
T cd03425 62 GE---LLATVEHDYPDKRVTLHVFLVELWSGEP--------QLLEHQELRWVPPEELDDL--DFPPAD 116 (124)
T ss_pred cc---eEEEEEeeCCCCeEEEEEEEEeeeCCCc--------ccccCceEEEeeHHHcccC--CCCccc
Confidence 54 5555444444444444444443332221 1346788999999999865 344433
No 50
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.65 E-value=8.2e-16 Score=123.43 Aligned_cols=111 Identities=19% Similarity=0.273 Sum_probs=76.0
Q ss_pred ccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCC
Q 022346 128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS 207 (298)
Q Consensus 128 gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~ 207 (298)
.|.++++ .|++|||+||.. .+.|.+|||++|+||+ +.+||+||+.||||+.+
T Consensus 3 ~v~~vi~-~~~~vLl~~~~~-----~~~w~lPgG~ve~gEs----------------------~~~aa~RE~~EEtGl~~ 54 (126)
T cd04688 3 RAAAIII-HNGKLLVQKNPD-----ETFYRPPGGGIEFGES----------------------SEEALIREFKEELGLKI 54 (126)
T ss_pred EEEEEEE-ECCEEEEEEeCC-----CCeEECCCccccCCCC----------------------HHHHHHHHHHHHhCCce
Confidence 3556666 467999998875 4799999999999998 57999999999999988
Q ss_pred CCCCCCeeEEeeccc--ccC--CceEEEEEEecCChhhHHhh-hccCCCCCcccceEEEcHHHHhch
Q 022346 208 ESLCNPLFIGISRRR--LNV--RPAAFFFIKCSLQSNEIQQL-YSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 208 ~~~~~p~~l~~~~~~--~~~--~~~~~~~~~~~~~~~ev~~~-~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
.... +++...+. ..+ .....++|.+....+..... .....+..|+.++.|++++++..+
T Consensus 55 ~~~~---~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 118 (126)
T cd04688 55 EITR---LLGVVENIFTYNGKPGHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEI 118 (126)
T ss_pred ecce---eeEEEEEeeccCCcccEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccC
Confidence 7766 55553321 112 12234555665554432200 000124568999999999999966
No 51
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.65 E-value=7.5e-16 Score=123.47 Aligned_cols=108 Identities=22% Similarity=0.318 Sum_probs=73.5
Q ss_pred cccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCC
Q 022346 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (298)
Q Consensus 127 ~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (298)
+.|+++++ .+|+|||+||.. .+.|.+|||++|++|+ +.+||+||++||||+.
T Consensus 2 ~~~~~vi~-~~~~vLlv~~~~-----~~~~~lPGG~ve~gEt----------------------~~~aa~REl~EEtGl~ 53 (125)
T cd04689 2 LRARAIVR-AGNKVLLARVIG-----QPHYFLPGGHVEPGET----------------------AENALRRELQEELGVA 53 (125)
T ss_pred eEEEEEEE-eCCEEEEEEecC-----CCCEECCCCcCCCCCC----------------------HHHHHHHHHHHHhCce
Confidence 35667776 688999999864 3689999999999998 4799999999999999
Q ss_pred CCCCCCCeeEEeecccc--cC--CceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhc
Q 022346 207 SESLCNPLFIGISRRRL--NV--RPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELEN 268 (298)
Q Consensus 207 ~~~~~~p~~l~~~~~~~--~~--~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~ 268 (298)
+.... +++...+.+ ++ .....++|.+....+... .......|+.++.|++++++..
T Consensus 54 ~~~~~---~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~---~~~~~~~e~~~~~W~~~~el~~ 113 (125)
T cd04689 54 VSDGR---FLGAIENQWHEKGVRTHEINHIFAVESSWLASD---GPPQADEDHLSFSWVPVSDLSL 113 (125)
T ss_pred eeccE---EEEEEeeeeccCCceEEEEEEEEEEEccccccc---CCccCccceEEEEEccHHHccc
Confidence 87665 666543322 11 112233444444332110 0013345788999999999763
No 52
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.65 E-value=1.5e-15 Score=126.86 Aligned_cols=113 Identities=19% Similarity=0.204 Sum_probs=77.3
Q ss_pred CcccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCC
Q 022346 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (298)
Q Consensus 126 ~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (298)
..+|++++++.+|+|||+||+.. +|.|.+|||+++++|+ +.+||.||++||||+
T Consensus 8 ~~~v~~~i~~~~g~vLL~~r~~~----~~~w~~P~G~~~~gE~----------------------~~~aa~REl~EEtG~ 61 (156)
T PRK00714 8 RPNVGIILLNRQGQVFWGRRIGQ----GHSWQFPQGGIDPGET----------------------PEQAMYRELYEEVGL 61 (156)
T ss_pred CCeEEEEEEecCCEEEEEEEcCC----CCeEECCcccCCCCcC----------------------HHHHHHHHHHHHhCC
Confidence 55888889989999999999853 5899999999999998 579999999999999
Q ss_pred CCCCCCCCeeEEeec----ccc--------c-CCc-eEEEEEEecCCh--hhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 206 PSESLCNPLFIGISR----RRL--------N-VRP-AAFFFIKCSLQS--NEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 206 ~~~~~~~p~~l~~~~----~~~--------~-~~~-~~~~~~~~~~~~--~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
.+..+. +++... ..+ . ... ...+||.+.... ..+. ....+..|+.++.|++++++.++
T Consensus 62 ~~~~~~---~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~---l~~~~~~E~~~~~W~~~del~~~ 135 (156)
T PRK00714 62 RPEDVE---ILAETRDWLRYDLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEIN---LNTTSHPEFDAWRWVSYWYPLDQ 135 (156)
T ss_pred CccceE---EEEEcCCeEEecCcHHHhhccCCcccCcEEEEEEEEecCCCcccc---CCCCCCCCeeeeEeCCHHHHHHh
Confidence 886654 444321 000 0 010 012233333321 2221 00123469999999999999976
Q ss_pred h
Q 022346 270 A 270 (298)
Q Consensus 270 ~ 270 (298)
.
T Consensus 136 ~ 136 (156)
T PRK00714 136 V 136 (156)
T ss_pred c
Confidence 3
No 53
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=2.1e-15 Score=119.43 Aligned_cols=103 Identities=20% Similarity=0.293 Sum_probs=73.2
Q ss_pred cEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCC
Q 022346 129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE 208 (298)
Q Consensus 129 V~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~ 208 (298)
+++++++.+|++||+||.. .|.|.||||+++++|+ +.+||+||++||||+.+.
T Consensus 3 ~~~~v~~~~~~vLl~~r~~-----~~~w~~PgG~ve~~Es----------------------~~~aa~REl~EEtGl~~~ 55 (118)
T cd04690 3 AAALILVRDGRVLLVRKRG-----TDVFYLPGGKIEAGET----------------------PLQALIRELSEELGLDLD 55 (118)
T ss_pred EEEEEEecCCeEEEEEECC-----CCcEECCCCccCCCCC----------------------HHHHHHHHHHHHHCCccC
Confidence 4566777899999999864 3789999999999998 479999999999999887
Q ss_pred C--CCCCeeEEeeccc---ccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 209 S--LCNPLFIGISRRR---LNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 209 ~--~~~p~~l~~~~~~---~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
. +. .++..... ........+++.+.... .+ ....|..++.|++++++...
T Consensus 56 ~~~~~---~~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~-------~~~~e~~~~~W~~~~e~~~~ 110 (118)
T cd04690 56 PDSLE---YLGTFRAPAANEPGVDVRATVYVAELTG-EP-------VPAAEIEEIRWVDYDDPADD 110 (118)
T ss_pred hhheE---EEEEEecccccCCCcEEEEEEEEEcccC-Cc-------CCCchhhccEEecHHHcccc
Confidence 6 54 55544321 11222333445554433 22 22458899999999998643
No 54
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=1.2e-15 Score=122.05 Aligned_cols=107 Identities=29% Similarity=0.416 Sum_probs=73.9
Q ss_pred cccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCC
Q 022346 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (298)
Q Consensus 127 ~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (298)
.+|.+++.+.+|++||+||+.. |.|+||||+++++|+ ..+||+||++||||+.
T Consensus 3 ~~v~~ii~~~~~~vLl~~r~~~-----~~w~lPgG~v~~~E~----------------------~~~aa~REl~EE~Gl~ 55 (129)
T cd04676 3 PGVTAVVRDDEGRVLLIRRSDN-----GLWALPGGAVEPGES----------------------PADTAVREVREETGLD 55 (129)
T ss_pred ceEEEEEECCCCeEEEEEecCC-----CcEECCeeccCCCCC----------------------HHHHHHHHHHHHhCce
Confidence 3567777778899999999864 899999999999998 4699999999999998
Q ss_pred CCCCCCCeeEEeecc---cc--c-C--CceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 207 SESLCNPLFIGISRR---RL--N-V--RPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 207 ~~~~~~p~~l~~~~~---~~--~-~--~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
+.... ++++... .. . + .....+++.+....+... .+..|..++.|++++++.++
T Consensus 56 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~e~~~~~w~~~~el~~~ 117 (129)
T cd04676 56 VEVTG---LVGIYTGPVHVVTYPNGDVRQYLDITFRCRVVGGELR------VGDDESLDVAWFDPDGLPPL 117 (129)
T ss_pred eEeeE---EEEEeecccceeecCCCCcEEEEEEEEEEEeeCCeec------CCCCceeEEEEEChhhCccc
Confidence 76544 4443211 11 1 1 112223333433333322 24558889999999999976
No 55
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=2.3e-15 Score=118.45 Aligned_cols=98 Identities=19% Similarity=0.317 Sum_probs=69.5
Q ss_pred EEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCCCC
Q 022346 131 AVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL 210 (298)
Q Consensus 131 ~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~~ 210 (298)
++|...+++|||+||.. |.|.||||+++++|+ +.+||.||++||||+.+..+
T Consensus 4 ~~i~~~~~~vLlv~r~~------~~w~~PgG~ve~gE~----------------------~~~aa~REl~EEtGl~~~~~ 55 (112)
T cd04667 4 TVICRRGGRVLLVRKSG------SRWALPGGKIEPGET----------------------PLQAARRELQEETGLQGLDL 55 (112)
T ss_pred EEEEecCCEEEEEEcCC------CcEeCCCCcCCCCCC----------------------HHHHHHHHHHHHhCCcccce
Confidence 44545788999999863 789999999999998 47999999999999987665
Q ss_pred CCCeeEEeecccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 211 CNPLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 211 ~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
. +++.... . ....++|.+........ ....|..++.|++++++.++
T Consensus 56 ~---~~~~~~~---~-~~~~~~f~~~~~~~~~~------~~~~e~~~~~W~~~~el~~~ 101 (112)
T cd04667 56 L---YLFHVDG---G-STRHHVFVASVPPSAQP------KPSNEIADCRWLSLDALGDL 101 (112)
T ss_pred E---EEEEEeC---C-CEEEEEEEEEcCCcCCC------CCchheeEEEEecHHHhhhc
Confidence 4 5544321 1 11223344433332211 23458899999999999876
No 56
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.63 E-value=2.1e-15 Score=121.98 Aligned_cols=105 Identities=22% Similarity=0.257 Sum_probs=74.7
Q ss_pred CcccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCC
Q 022346 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (298)
Q Consensus 126 ~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (298)
.++|+++++ .+++|||+||... ...|.|++|||++|++|+ +.++++||++||||+
T Consensus 13 ~~~v~~ii~-~~~~vLL~kr~~~--~~~g~w~lPgG~ve~gE~----------------------~~~a~~REl~EEtGl 67 (130)
T cd04511 13 KIIVGCVPE-WEGKVLLCRRAIE--PRHGFWTLPAGFMENGET----------------------TEQGALRETWEEAGA 67 (130)
T ss_pred cEEEEEEEe-cCCEEEEEEecCC--CCCCeEECCcccccCCCC----------------------HHHHHHHHHHHHhCC
Confidence 344555555 5689999999865 467999999999999999 469999999999999
Q ss_pred CCCCCCCCeeEEeecccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHh
Q 022346 206 PSESLCNPLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELE 267 (298)
Q Consensus 206 ~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~ 267 (298)
.+.... ++++... .......++|.+......+. ...|+.++.|+++++|.
T Consensus 68 ~~~~~~---~~~~~~~--~~~~~~~~~f~~~~~~~~~~-------~~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 68 RVEIDG---LYAVYSV--PHISQVYMFYRARLLDLDFA-------PGPESLEVRLFTEEEIP 117 (130)
T ss_pred EEEeee---EEEEEec--CCceEEEEEEEEEEcCCccc-------CCcchhceEEECHHHCC
Confidence 875443 5555432 22222334455555444332 23578899999999996
No 57
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=3.6e-15 Score=121.37 Aligned_cols=118 Identities=19% Similarity=0.143 Sum_probs=77.3
Q ss_pred ccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCC
Q 022346 128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS 207 (298)
Q Consensus 128 gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~ 207 (298)
++.+++++.+|+|||+|+.......++.|.+|||+++++|+ +.+||.||++||||+.+
T Consensus 2 ~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~----------------------~~~a~~Re~~EE~G~~~ 59 (133)
T cd04685 2 AARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGES----------------------PEQAARRELREETGITV 59 (133)
T ss_pred eEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCC----------------------HHHHHHHHHHHHHCCcc
Confidence 45678888999999999886533467899999999999998 57999999999999998
Q ss_pred CCCCCCeeEEeecc--ccc--CCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 208 ESLCNPLFIGISRR--RLN--VRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 208 ~~~~~p~~l~~~~~--~~~--~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
..+.. ++.+... .+. ......+||.+.....++........+..+...+.|+++++|.+.
T Consensus 60 ~~~~~--~~~~~~~~f~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 60 ADLGP--PVWRRDAAFTFLGVDGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred ccccc--eEEEEEEEEEecCccceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 44332 3332211 111 112233455554443232211001122334568999999999876
No 58
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.62 E-value=3.9e-15 Score=119.39 Aligned_cols=106 Identities=18% Similarity=0.191 Sum_probs=71.5
Q ss_pred cEEEEEeCC---CeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCC
Q 022346 129 NGAVVETSD---KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (298)
Q Consensus 129 V~~vl~~~d---g~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (298)
+++|+++.+ ++|||++|... |.|.+|||++|++|+ +.+||+||++||||+
T Consensus 3 ~g~v~~~~~~~~~~vLLv~~~~~-----~~w~~PgG~ve~~E~----------------------~~~aa~RE~~EEtG~ 55 (122)
T cd04666 3 AGAIPYRETGGEVEVLLVTSRRT-----GRWIVPKGGPEKDES----------------------PAEAAAREAWEEAGV 55 (122)
T ss_pred EEEEEEEEcCCceEEEEEEecCC-----CeEECCCCCcCCCCC----------------------HHHHHHHHHHHHhCC
Confidence 345555544 68999998743 899999999999998 479999999999999
Q ss_pred CCCCC-CCCeeEEeecccccC----CceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchh
Q 022346 206 PSESL-CNPLFIGISRRRLNV----RPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMA 270 (298)
Q Consensus 206 ~~~~~-~~p~~l~~~~~~~~~----~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~ 270 (298)
..... . +++........ .....+||.+..+... . ..+..|..++.|++++++..+.
T Consensus 56 ~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~-----~~~~~e~~~~~W~~~~ea~~~~ 116 (122)
T cd04666 56 RGKIGKR---PLGRFEYRKRSKNRPPRCEVAVFPLEVTEEL-D-----EWPEMHQRKRKWFSPEEAALLV 116 (122)
T ss_pred cccccce---EEEEEEeeecCCCCCceEEEEEEEEEEeccc-c-----CCcccCceEEEEecHHHHHHhc
Confidence 87665 4 66665432221 1223334433322211 1 1223467899999999998764
No 59
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.61 E-value=3.7e-15 Score=120.03 Aligned_cols=108 Identities=25% Similarity=0.333 Sum_probs=71.1
Q ss_pred ccEEEEEeCCC---eEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhC
Q 022346 128 GNGAVVETSDK---KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG 204 (298)
Q Consensus 128 gV~~vl~~~dg---~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG 204 (298)
++++|+++.++ ++||+||+. |.|.+|||++|++|+ +.+||+||+.||||
T Consensus 4 ~~g~vi~~~~~~~~~vLl~~~~~------~~w~~PgG~ve~gEs----------------------~~~aa~REl~EEtG 55 (130)
T cd03428 4 SAGAIIYRRLNNEIEYLLLQASY------GHWDFPKGHVEPGED----------------------DLEAALRETEEETG 55 (130)
T ss_pred EEEEEEEEecCCCceEEEEEccC------CcCcCCcCCCCCCCC----------------------HHHHHHHHHHHHHC
Confidence 34566665554 699999875 789999999999998 46999999999999
Q ss_pred CCCCCCCCC-eeEEeecccccCCceEEEEEEecCC-hhhHHhhhccCCCCCcccceEEEcHHHHhchh
Q 022346 205 VPSESLCNP-LFIGISRRRLNVRPAAFFFIKCSLQ-SNEIQQLYSTAQDGYESTQLFAVSMIELENMA 270 (298)
Q Consensus 205 l~~~~~~~p-~~l~~~~~~~~~~~~~~~~~~~~~~-~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~ 270 (298)
+.+..+... .+...............++|.+... ...+. .+ .|..++.|++++++.++.
T Consensus 56 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~-~E~~~~~W~~~~e~~~~~ 116 (130)
T cd03428 56 ITAEQLFIVLGFKETLNYQVRGKLKTVTYFLAELRPDVEVK------LS-EEHQDYRWLPYEEALKLL 116 (130)
T ss_pred CChhhhhhhccceeEEEccccCcceEEEEEEEEeCCCCccc------cc-cceeeEEeecHHHHHHHc
Confidence 998876521 0111111111112222333344333 22222 33 588999999999998763
No 60
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.61 E-value=6.9e-15 Score=125.69 Aligned_cols=115 Identities=16% Similarity=0.199 Sum_probs=79.5
Q ss_pred EEEEeCC--CeEEEEEecCCCCCCCCcEE-cCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCC
Q 022346 131 AVVETSD--KKILLLQRSNNVGEFPGHFV-FPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS 207 (298)
Q Consensus 131 ~vl~~~d--g~vLl~rRs~~~~~~~g~w~-~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~ 207 (298)
+++.+++ ++|++.||+..+..+||+|+ +||||+++||++ .+||+||++|||||..
T Consensus 39 ~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~----------------------~~aA~REl~EE~Gl~~ 96 (180)
T cd03676 39 GYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGP----------------------EETLVKECDEEAGLPE 96 (180)
T ss_pred EEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCH----------------------HHHHHHHHHHHhCCCH
Confidence 4455665 89999999999888999995 899999999984 6999999999999988
Q ss_pred CCCCCCeeEEeeccc---ccC--CceEEEEEEecCChh-hHHhhhccCCCCCcccceEEEcHHHHhchhccC
Q 022346 208 ESLCNPLFIGISRRR---LNV--RPAAFFFIKCSLQSN-EIQQLYSTAQDGYESTQLFAVSMIELENMASKM 273 (298)
Q Consensus 208 ~~~~~p~~l~~~~~~---~~~--~~~~~~~~~~~~~~~-ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~~~ 273 (298)
..+....+++..... ... .....++|.+..... .+. .+..|+.++.|++++|+.++....
T Consensus 97 ~~~~~l~~~g~~~~~~~~~~~~~~~e~~~~f~~~~~~~~~~~------~~~~Ev~~~~~~~~~el~~~l~~g 162 (180)
T cd03676 97 DLVRQLKPVGVVSYLREGEAGGLQPEVEYVYDLELPPDFIPA------PQDGEVESFRLLTIDEVLRALKEG 162 (180)
T ss_pred HHHhhceeccEEEEEEEcCCCcEeeeEEEEEEEEcCCCCeeC------CCCCcEeEEEEECHHHHHHHHHcC
Confidence 764311133322111 111 122233344433221 122 566799999999999999987543
No 61
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.57 E-value=2.1e-14 Score=112.76 Aligned_cols=109 Identities=27% Similarity=0.392 Sum_probs=77.1
Q ss_pred ccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCC
Q 022346 128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS 207 (298)
Q Consensus 128 gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~ 207 (298)
++++++++.++++||++|+.. ++|+|.||||+++++|+ +.++|+||+.||+|+.+
T Consensus 2 ~~~~i~~~~~~~ill~kr~~~---~~~~~~~p~G~~~~~e~----------------------~~~~a~RE~~EE~Gl~~ 56 (123)
T cd02883 2 AVGAVILDEDGRVLLVRRADS---PGGLWELPGGGVEPGET----------------------LEEAAIREVREETGLDV 56 (123)
T ss_pred ceEEEEECCCCCEEEEEEcCC---CCCeEeCCcccccCCCC----------------------HHHHHHHHHHHhhCccc
Confidence 567778877799999999876 67999999999999998 46999999999999987
Q ss_pred CCCCCCeeEEeecccc--cCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 208 ESLCNPLFIGISRRRL--NVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 208 ~~~~~p~~l~~~~~~~--~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
.... .+++..... .+.....++|.+....++.. ..+..|..++.|++++++.++
T Consensus 57 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~w~~~~~l~~~ 112 (123)
T cd02883 57 DVLR---LLGVYEVESPDEGEHAVVFVFLARLVGGEPT-----LLPPDEISEVRWVTLDELPAL 112 (123)
T ss_pred eeee---EEEEEEeeccCCCceEEEEEEEEEeCCCCcC-----CCCCCccceEEEEcHHHCccc
Confidence 6443 334332221 23333344444444433221 123457789999999999874
No 62
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.57 E-value=2.6e-14 Score=122.65 Aligned_cols=132 Identities=11% Similarity=0.059 Sum_probs=85.8
Q ss_pred CcccEEEEEeC-CCeEEEEEecCCCC----CCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhh
Q 022346 126 PLGNGAVVETS-DKKILLLQRSNNVG----EFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVV 200 (298)
Q Consensus 126 ~~gV~~vl~~~-dg~vLl~rRs~~~~----~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~ 200 (298)
+-+|++++.+. +++|||+|+.+... ..++.|+||||++|++|++ .+||+||++
T Consensus 44 ~~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~----------------------~~aA~REl~ 101 (185)
T TIGR00052 44 GNAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESP----------------------EDVARREAI 101 (185)
T ss_pred CCeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCH----------------------HHHHHHHcc
Confidence 55677777765 47999999876531 1468899999999999984 699999999
Q ss_pred hhhCCCCCCCCCCeeEEeecccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchhccCCC-Cchh
Q 022346 201 EEIGVPSESLCNPLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMASKMPG-CHQG 279 (298)
Q Consensus 201 EEtGl~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~~~~~-~~~g 279 (298)
||||+.+..+. .++.............++|.+....+.... ..+.+..|..++.|++++++.++...... ++++
T Consensus 102 EEtG~~~~~~~---~~~~~~~~~g~~~~~~~~f~a~~~~~~~~~--~~~~~~~E~ie~~~~~~~e~~~~~~~G~i~d~~t 176 (185)
T TIGR00052 102 EEAGYQVKNLR---KLLSFYSSPGGVTELIHLFIAEVDDNQAAG--IGGGADEEEIEVLHLVFSQALQWIKEGKIDNGKT 176 (185)
T ss_pred ccccceecceE---EEEEEEcCCCCCcEEEEEEEEEEchhhcCC--CCCCCCccceEEEEeCHHHHHHHHHcCCCCCHHH
Confidence 99999998776 444432221111222333334333221110 11234457778999999999998754333 5665
Q ss_pred HHHHH
Q 022346 280 GFALY 284 (298)
Q Consensus 280 ~~~~y 284 (298)
.++++
T Consensus 177 ~~al~ 181 (185)
T TIGR00052 177 VILLQ 181 (185)
T ss_pred HHHHH
Confidence 55543
No 63
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.57 E-value=2.6e-14 Score=123.06 Aligned_cols=112 Identities=21% Similarity=0.305 Sum_probs=77.5
Q ss_pred ccEEEEE--eCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCC
Q 022346 128 GNGAVVE--TSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (298)
Q Consensus 128 gV~~vl~--~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (298)
+++++.+ +.++.|||.||+.....++|.|+||||++|++|.. ..+||+||++||||+
T Consensus 32 aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~---------------------~~~tA~REl~EEtGl 90 (190)
T PRK10707 32 AAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDAS---------------------LIATALREAQEEVAI 90 (190)
T ss_pred eEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCccc---------------------HHHHHHHHHHHHHCC
Confidence 4444434 34568999999877666899999999999997642 469999999999999
Q ss_pred CCCCCCCCeeEEeecc--cccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchh
Q 022346 206 PSESLCNPLFIGISRR--RLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMA 270 (298)
Q Consensus 206 ~~~~~~~p~~l~~~~~--~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~ 270 (298)
.+..+. +++.... ...+..+..++...... ... .+|.+|..++.|++++++.++.
T Consensus 91 ~~~~~~---~lg~l~~~~~~~~~~~~~~v~~~~~~-~~~------~~d~~Ev~~v~~vpl~e~~~~~ 147 (190)
T PRK10707 91 PPSAVE---VIGVLPPVDSSTGYQVTPVVGIIPPD-LPY------RANEDEVAAVFEMPLAEALHLG 147 (190)
T ss_pred CccceE---EEEEeeeeeccCCcEEEEEEEEECCC-CCC------CCChhhhheEEEEeHHHHhCcc
Confidence 988776 6665432 12233333332222111 111 2577799999999999998875
No 64
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.56 E-value=2.1e-14 Score=116.45 Aligned_cols=107 Identities=21% Similarity=0.338 Sum_probs=68.9
Q ss_pred ccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCC
Q 022346 128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS 207 (298)
Q Consensus 128 gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~ 207 (298)
+|++||+ .+|+|||++|... +.|.||||++|++|+ +.+||+||++||||+.+
T Consensus 2 ~~~~ii~-~~~~vLLv~~~~~-----~~w~lPgG~ve~gEt----------------------~~~aa~REl~EEtGl~~ 53 (131)
T cd04686 2 AVRAIIL-QGDKILLLYTKRY-----GDYKFPGGGVEKGED----------------------HIEGLIRELQEETGATN 53 (131)
T ss_pred cEEEEEE-ECCEEEEEEEcCC-----CcEECccccCCCCCC----------------------HHHHHHHHHHHHHCCcc
Confidence 4667776 5789999998653 589999999999998 47999999999999986
Q ss_pred C-CCCCCeeEEeecc----ccc-C--CceEEEEEEecCChhhHHhhhccCCCCCcc---cceEEEcHHHHhch
Q 022346 208 E-SLCNPLFIGISRR----RLN-V--RPAAFFFIKCSLQSNEIQQLYSTAQDGYES---TQLFAVSMIELENM 269 (298)
Q Consensus 208 ~-~~~~p~~l~~~~~----~~~-~--~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~---~~~~wv~~~el~~l 269 (298)
. ... .++.... ... . .....+||.|........ ...+..|. ..+.|++++++..-
T Consensus 54 ~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~e~~~~~~~~W~~~~ea~~~ 119 (131)
T cd04686 54 IRVIE---KFGTYTERRPWRKPDADIFHMISYYYLCEVDAELGA----QQLEDYEAELGMKPIWINIHEAIEH 119 (131)
T ss_pred cccce---EEEEEEeeccccCCCCceeEEEEEEEEEEEcCCcCC----cccchhhHhcCCCcEEecHHHHHHh
Confidence 3 333 4444321 111 1 112234555544432111 01222232 36899999999864
No 65
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.56 E-value=1.2e-14 Score=130.73 Aligned_cols=107 Identities=20% Similarity=0.209 Sum_probs=76.8
Q ss_pred CcccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCC
Q 022346 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (298)
Q Consensus 126 ~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (298)
..+|.+ +++.+++|||+||.... +|.|.+|||++|+||+ +++||+||++|||||
T Consensus 132 ~paViv-~V~~~~~iLL~rr~~~~---~g~wslPgG~vE~GEs----------------------~eeAa~REv~EEtGl 185 (256)
T PRK00241 132 APCIIV-AVRRGDEILLARHPRHR---NGVYTVLAGFVEVGET----------------------LEQCVAREVMEESGI 185 (256)
T ss_pred CCEEEE-EEEeCCEEEEEEccCCC---CCcEeCcccCCCCCCC----------------------HHHHhhhhhhhccCc
Confidence 334444 44577899999987652 7999999999999998 579999999999999
Q ss_pred CCCCCCCCeeEEeecccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 206 PSESLCNPLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 206 ~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
.+..+. +++...+.+... ..+.|.+....+++. .+..|+.++.|++++++..+
T Consensus 186 ~v~~~~---~~~s~~~~~p~~--lm~~f~a~~~~~~~~------~~~~Ei~~a~W~~~del~~l 238 (256)
T PRK00241 186 KVKNLR---YVGSQPWPFPHS--LMLGFHADYDSGEIV------FDPKEIADAQWFRYDELPLL 238 (256)
T ss_pred eeeeeE---EEEeEeecCCCe--EEEEEEEEecCCccc------CCcccEEEEEEECHHHCccc
Confidence 987766 666543322222 222333433444444 56679999999999998754
No 66
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.56 E-value=2.4e-14 Score=134.07 Aligned_cols=119 Identities=23% Similarity=0.300 Sum_probs=76.5
Q ss_pred cccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCC
Q 022346 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (298)
Q Consensus 127 ~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (298)
++|.++++ .+|+|||+||... ..+|+|.+|||++|+||+ +.+||+||++|||||.
T Consensus 204 vtv~avv~-~~g~VLLvrR~~~--p~~g~W~lPGG~ve~gEt----------------------~~~Aa~REl~EETGl~ 258 (340)
T PRK05379 204 VTVDAVVV-QSGHVLLVRRRAE--PGKGLWALPGGFLEQDET----------------------LLDACLRELREETGLK 258 (340)
T ss_pred eEEEEEEE-ECCEEEEEEecCC--CCCCeEECCcccCCCCCC----------------------HHHHHHHHHHHHHCCc
Confidence 56666665 6889999999875 458999999999999998 5799999999999998
Q ss_pred CCCCCCCeeEEe------ecccc---cCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchhccCCCCc
Q 022346 207 SESLCNPLFIGI------SRRRL---NVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMASKMPGCH 277 (298)
Q Consensus 207 ~~~~~~p~~l~~------~~~~~---~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~~~~~~~ 277 (298)
+.... +.+. ..... .++... +++.+....++... ....+|..++.|++++++..+...+..++
T Consensus 259 v~~~~---l~~~~~~~~~f~~p~r~~~~~~i~-~~f~~~~~~~~~~~----~~~~de~~~~~W~~~~el~~~~~~~~~dh 330 (340)
T PRK05379 259 LPEPV---LRGSIRDQQVFDHPGRSLRGRTIT-HAFLFEFPAGELPR----VKGGDDADKARWVPLAELLAMRDRMFEDH 330 (340)
T ss_pred ccccc---cceeeeeeEEEcCCCCCCCCcEEE-EEEEEEecCCccCc----cCCCCceeeEEEEEHHHhhhhhhhhhhHH
Confidence 75543 2221 11111 112222 22223233222110 02345789999999999987643444444
Q ss_pred h
Q 022346 278 Q 278 (298)
Q Consensus 278 ~ 278 (298)
.
T Consensus 331 ~ 331 (340)
T PRK05379 331 F 331 (340)
T ss_pred H
Confidence 4
No 67
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.56 E-value=6e-14 Score=120.90 Aligned_cols=165 Identities=12% Similarity=0.050 Sum_probs=104.6
Q ss_pred CcCCcCCcceeeeceEeecCCCCCCcceEEEEecC--cccccccccCCCcchhhccCCCCchhhhhccccCCcccEEEEE
Q 022346 57 NKSLFNGQKFRYGGHIMRGEGGSSVESHVCLHLGL--TDYRTFVGTNLNPLWEKFLVPSEDDVIQCQHTASPLGNGAVVE 134 (298)
Q Consensus 57 ~p~lfng~~f~~~~~~~~~~~~~~~~~~~~l~lg~--T~yr~~v~T~~~p~~~~~~~~~~~~~~~~~~~~~~~gV~~vl~ 134 (298)
+..+|.++.|++....+. +.+..|. +.+|+++- ++-+|++++.
T Consensus 9 ~~~~~~~~~~~v~~~~~~----------~~~pdG~~~~~~r~vv~-------------------------~~~~v~Vl~~ 53 (191)
T PRK15009 9 KDKILSDNYFTLHNITYD----------LTRKDGEVIRHKREVYD-------------------------RGNGATILLY 53 (191)
T ss_pred EEEEEeCCeEEEEEEEEE----------EECCCCCccceEEEEEE-------------------------ECCEEEEEEE
Confidence 345677778888776542 2334555 34556662 1445666767
Q ss_pred eC-CCeEEEEEecCCCCC------CCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCC
Q 022346 135 TS-DKKILLLQRSNNVGE------FPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS 207 (298)
Q Consensus 135 ~~-dg~vLl~rRs~~~~~------~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~ 207 (298)
+. +++|+|+|+.+.. . .+-.|++|+|.+|++ ++ .+||+|||.||||+.+
T Consensus 54 ~~~~~~vvLvrQyR~~-v~~~~~~~~~~lElPAG~vd~~-~p----------------------~~aA~REL~EETGy~a 109 (191)
T PRK15009 54 NAKKKTVVLIRQFRVA-TWVNGNESGQLIETCAGLLDND-EP----------------------EVCIRKEAIEETGYEV 109 (191)
T ss_pred ECCCCEEEEEEccccc-ccccCCCCceEEEEeccccCCC-CH----------------------HHHHHHHHHHhhCCcc
Confidence 65 6799999998874 3 455789999999975 43 6999999999999999
Q ss_pred CCCCCCeeEEeeccc--ccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchhccCCC-CchhHHHHH
Q 022346 208 ESLCNPLFIGISRRR--LNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMASKMPG-CHQGGFALY 284 (298)
Q Consensus 208 ~~~~~p~~l~~~~~~--~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~~~~~-~~~g~~~~y 284 (298)
..+. .++..... .+.....+|+.... ...... ..+.+..|..++.|++++++.++..+... ++++.++++
T Consensus 110 ~~~~---~l~~~~~spG~s~e~~~lf~a~~~-~~~~~~---~~~~de~E~iev~~~~~~e~~~~i~~G~i~da~ti~al~ 182 (191)
T PRK15009 110 GEVR---KLFELYMSPGGVTELIHFFIAEYS-DSQRAN---AGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTVLLLN 182 (191)
T ss_pred ceEE---EeeEEEcCCcccCcEEEEEEEEEC-chhccc---CCCCCCCceEEEEEEcHHHHHHHHHcCCCCcHHHHHHHH
Confidence 8776 44433211 11222333333321 111111 11245678899999999999998865443 677666665
Q ss_pred HHH
Q 022346 285 KLM 287 (298)
Q Consensus 285 ~~~ 287 (298)
...
T Consensus 183 ~~~ 185 (191)
T PRK15009 183 YLQ 185 (191)
T ss_pred HHH
Confidence 543
No 68
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.53 E-value=1.4e-13 Score=119.69 Aligned_cols=134 Identities=13% Similarity=-0.003 Sum_probs=87.6
Q ss_pred CcccEEEEEeC-CCeEEEEEecCCCCC----CCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhh
Q 022346 126 PLGNGAVVETS-DKKILLLQRSNNVGE----FPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVV 200 (298)
Q Consensus 126 ~~gV~~vl~~~-dg~vLl~rRs~~~~~----~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~ 200 (298)
+-+|+++.++. +++|||+|+.+.... .+-.|++|+|++|+||++ .+||+|||.
T Consensus 49 ~~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p----------------------~~aA~REL~ 106 (202)
T PRK10729 49 GHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESV----------------------EDVARREAI 106 (202)
T ss_pred CCeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCH----------------------HHHHHHHHH
Confidence 44567777776 479999999877421 235799999999999984 699999999
Q ss_pred hhhCCCCCCCCCCeeEEeeccc--ccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchhccCCC-Cc
Q 022346 201 EEIGVPSESLCNPLFIGISRRR--LNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMASKMPG-CH 277 (298)
Q Consensus 201 EEtGl~~~~~~~p~~l~~~~~~--~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~~~~~-~~ 277 (298)
||||+.+..+. .++.+... .+.....+|+.......... .....|..|..++.|++++++.++...... ++
T Consensus 107 EETGy~a~~~~---~l~~~~~spg~~~e~~~~fla~~~~~~~~~---~~~~~de~E~i~v~~~~~~e~~~~~~~G~i~d~ 180 (202)
T PRK10729 107 EEAGLIVGRTK---PVLSYLASPGGTSERSSIMVGEVDATTASG---IHGLADENEDIRVHVVSREQAYQWVEEGKIDNA 180 (202)
T ss_pred HHhCceeeEEE---EEEEEEcCCCcCceEEEEEEEEEcchhccc---CCCCCCCCCceEEEEEcHHHHHHHHHcCCCCcH
Confidence 99999987765 44432222 11222333333221211100 011256778889999999999998854443 67
Q ss_pred hhHHHHHHHH
Q 022346 278 QGGFALYKLM 287 (298)
Q Consensus 278 ~g~~~~y~~~ 287 (298)
++.++++...
T Consensus 181 ~ti~al~~~~ 190 (202)
T PRK10729 181 ASVIALQWLQ 190 (202)
T ss_pred HHHHHHHHHH
Confidence 7766665543
No 69
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.53 E-value=3e-14 Score=115.74 Aligned_cols=99 Identities=20% Similarity=0.311 Sum_probs=69.9
Q ss_pred CCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCCCCCCCee
Q 022346 136 SDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLCNPLF 215 (298)
Q Consensus 136 ~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~~~~p~~ 215 (298)
.++++||+||+.. ..|.|.||||++|+||+ +.+||+||+.||||+.+... +
T Consensus 11 ~~~~~Llvk~~~~---~~g~W~fPgG~ve~gEt----------------------~~eaa~REl~EEtGl~v~~~----~ 61 (132)
T cd04661 11 DDTLVLLVQQKVG---SQNHWILPQGKREEGET----------------------LRQTAERTLKELCGNNLKAK----F 61 (132)
T ss_pred cCcEEEEEEeecC---CCCeeECCcccccCCCC----------------------HHHHHHHHHHHhhCCCceEE----E
Confidence 4678999998753 25899999999999999 57999999999999976531 2
Q ss_pred EEe-----eccccc-C------CceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchh
Q 022346 216 IGI-----SRRRLN-V------RPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMA 270 (298)
Q Consensus 216 l~~-----~~~~~~-~------~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~ 270 (298)
++. ....+. . .....|+|.+...++++. . ..|+.++.|++++++.++.
T Consensus 62 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~~------~-~~e~~~~~W~~~~el~~~l 121 (132)
T cd04661 62 YGNAPVGFYKYKYPKAVRNEGIVGAKVFFFKARYMSGQFE------L-SQNQVDFKWLAKEELQKYL 121 (132)
T ss_pred EEecCcEEEEEecCcccccccCcccEEEEEEEEEecCccc------c-CCCcceeEecCHHHHHhhc
Confidence 221 111111 0 113456667766665543 2 2588999999999999763
No 70
>PLN02709 nudix hydrolase
Probab=99.52 E-value=7.1e-14 Score=122.14 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=79.4
Q ss_pred CcccEEEEEeC------CCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhh
Q 022346 126 PLGNGAVVETS------DKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREV 199 (298)
Q Consensus 126 ~~gV~~vl~~~------dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl 199 (298)
.-+|.+.+... +.+|||++|+.+...++|.|.||||++|++|.. +.++|+||+
T Consensus 33 ~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~---------------------~~~tAlRE~ 91 (222)
T PLN02709 33 SSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKD---------------------DIATALREA 91 (222)
T ss_pred ccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCC---------------------HHHHHHHHH
Confidence 44555555432 238999999988767899999999999998753 579999999
Q ss_pred hhhhCCCCCCCCCCeeEEeecccc--cCCceEEEEEEecCC-hhhHHhhhccCCCCCcccceEEEcHHHHhchh
Q 022346 200 VEEIGVPSESLCNPLFIGISRRRL--NVRPAAFFFIKCSLQ-SNEIQQLYSTAQDGYESTQLFAVSMIELENMA 270 (298)
Q Consensus 200 ~EEtGl~~~~~~~p~~l~~~~~~~--~~~~~~~~~~~~~~~-~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~ 270 (298)
.||+||+..... .+|...... ++..+.-|...+... .-.+. ++..|+.++.||+++.+.+..
T Consensus 92 ~EEiGl~~~~v~---vlg~L~~~~t~sg~~V~P~V~~~~~~~~~~~~------~np~EV~~vf~vPL~~ll~~~ 156 (222)
T PLN02709 92 REEIGLDPSLVT---IISVLEPFVNKKGMSVAPVIGFLHDKKAFKPL------PNPAEVEEIFDVPLEMFLKDK 156 (222)
T ss_pred HHHHCCCchheE---EeeecCCeECCCCCEEEEEEEEecCCCCcccc------CChhhhheeEEecHHHHhCCc
Confidence 999999887665 666543222 223333332222111 11222 567799999999999998654
No 71
>PRK08999 hypothetical protein; Provisional
Probab=99.50 E-value=1.7e-13 Score=126.82 Aligned_cols=106 Identities=25% Similarity=0.343 Sum_probs=76.0
Q ss_pred EEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCCC
Q 022346 130 GAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSES 209 (298)
Q Consensus 130 ~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~ 209 (298)
++++++.+|++||.||... +.++|+|+||||++|++|+ ..+++.||++||||+.+..
T Consensus 9 ~~vi~~~~~~vLL~kR~~~-~~~~g~w~~PgG~ve~gE~----------------------~~~aa~RE~~EE~Gl~~~~ 65 (312)
T PRK08999 9 AGVIRDADGRILLARRPEG-KHQGGLWEFPGGKVEPGET----------------------VEQALARELQEELGIEVTA 65 (312)
T ss_pred EEEEECCCCeEEEEEecCC-CCCCCeEECCccCCCCCCC----------------------HHHHHHHHHHHHhCCceec
Confidence 4455667799999999766 4789999999999999998 4699999999999998765
Q ss_pred CCCCeeEEeecccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 210 LCNPLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 210 ~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
.. .+....+.++++....+++.+....+. ....|..++.|++++++.++
T Consensus 66 ~~---~l~~~~h~~~~~~~~i~~y~~~~~~~~--------~~~~e~~~~~Wv~~~el~~~ 114 (312)
T PRK08999 66 AR---PLITVRHDYPDKRVRLDVRRVTAWQGE--------PHGREGQPLAWVAPDELAVY 114 (312)
T ss_pred ce---eEEEEEEEcCCCeEEEEEEEEEEecCc--------ccCccCCccEEecHHHcccC
Confidence 54 444444444444434444444333222 22346778899999999875
No 72
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=3.2e-13 Score=107.49 Aligned_cols=101 Identities=20% Similarity=0.280 Sum_probs=61.5
Q ss_pred EEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCCCCCC
Q 022346 133 VETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLCN 212 (298)
Q Consensus 133 l~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~~~~ 212 (298)
+...+ ++||++|+.. ..+|.|.||||++|++|+ +.+||.||+.||||+.+....
T Consensus 11 l~~~~-~~lL~~r~~~--~~~~~w~lPgG~ve~~E~----------------------~~~aa~REl~EE~g~~~~~~~- 64 (118)
T cd04674 11 LPVDD-GLLVIRRGIE--PGRGKLALPGGFIELGET----------------------WQDAVARELLEETGVAVDPAD- 64 (118)
T ss_pred EEECC-CEEEEEeecC--CCCCeEECCceecCCCCC----------------------HHHHHHHHHHHHHCCcccccE-
Confidence 33344 5777787765 357999999999999998 579999999999999886422
Q ss_pred CeeEEeecccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHH
Q 022346 213 PLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIE 265 (298)
Q Consensus 213 p~~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~e 265 (298)
...+.. ..........|.+.....+.++.. .....|.+++.|+....
T Consensus 65 l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~E~~~~~~~~~~~ 111 (118)
T cd04674 65 IRLFDV--RSAPDGTLLVFGLLPERRAADLPP----FEPTDETTERAVVTAPS 111 (118)
T ss_pred EEEEEE--EecCCCeEEEEEEEeccccccCCC----CCCCcceeeEEEccCCc
Confidence 112222 222233344444444333333210 02345677777766543
No 73
>PLN03143 nudix hydrolase; Provisional
Probab=99.43 E-value=3.6e-12 Score=115.94 Aligned_cols=138 Identities=17% Similarity=0.134 Sum_probs=79.0
Q ss_pred CCcccEEEEE-eCCCe--EEEEEecCCCCCCCCcEEcCCcccCCC-CCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhh
Q 022346 125 SPLGNGAVVE-TSDKK--ILLLQRSNNVGEFPGHFVFPGGHPEPQ-DAGITSHPCGSTDSEFINHKVSQEMFDSITREVV 200 (298)
Q Consensus 125 ~~~gV~~vl~-~~dg~--vLl~rRs~~~~~~~g~w~~PGG~vE~~-E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~ 200 (298)
++-+|++++. +.+++ ++|+||.+.. ...-.|+||||.+|++ |+ +.++|+||++
T Consensus 127 rg~aVaVL~~l~~~ge~~VlLVrQ~R~p-vg~~~lE~PAG~lD~~~ed----------------------p~~aA~REL~ 183 (291)
T PLN03143 127 RGPAVAVLILLESEGETYAVLTEQVRVP-VGKFVLELPAGMLDDDKGD----------------------FVGTAVREVE 183 (291)
T ss_pred cCCeEEEEEEEeCCCCEEEEEEEeEecC-CCcEEEEecccccCCCCCC----------------------HHHHHHHHHH
Confidence 3445665544 45565 9999998763 4456899999999986 55 4799999999
Q ss_pred hhhCCCCCCCCCCeeEEee-------cccccCCc---eEEEEEEecCChhhHHhhhc--c-CCCCCcccceEEEcHHHHh
Q 022346 201 EEIGVPSESLCNPLFIGIS-------RRRLNVRP---AAFFFIKCSLQSNEIQQLYS--T-AQDGYESTQLFAVSMIELE 267 (298)
Q Consensus 201 EEtGl~~~~~~~p~~l~~~-------~~~~~~~~---~~~~~~~~~~~~~ev~~~~~--~-~~d~~E~~~~~wv~~~el~ 267 (298)
||||+.+.....-.+.+.. .....+.. ..+|..........+..... . ..+..|..++.||+++++.
T Consensus 184 EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw 263 (291)
T PLN03143 184 EETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGGCDEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELW 263 (291)
T ss_pred HHHCCccccceEEEeeeccccCcCceEEecCCccCCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHH
Confidence 9999986432200111100 01111211 22222222222221110001 1 1466788899999999998
Q ss_pred chhccCCCCchh--HHHHHHHHHH
Q 022346 268 NMASKMPGCHQG--GFALYKLMVE 289 (298)
Q Consensus 268 ~l~~~~~~~~~g--~~~~y~~~~~ 289 (298)
++. .++|+ ++.+|+.+++
T Consensus 264 ~~~----aD~ktl~al~l~~~~k~ 283 (291)
T PLN03143 264 RMT----ADAKVLMAIALYEMAKR 283 (291)
T ss_pred HHH----HhHHHHHHHHHHHHHHh
Confidence 875 24443 4555655443
No 74
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.41 E-value=4.4e-12 Score=113.02 Aligned_cols=135 Identities=15% Similarity=0.167 Sum_probs=82.2
Q ss_pred CcccEEEEEeCCCeEEEEEecCCCCCCCCcEEcC-CcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhC
Q 022346 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFP-GGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG 204 (298)
Q Consensus 126 ~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~P-GG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG 204 (298)
-.++.++|++++|+|||+||+..+..+||+|+.. |||+-.|+++.. +|...+ +.+.-+....+||+|||.||||
T Consensus 56 Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e--~~~e~~---~~~~~~~~~~eAA~REL~EElG 130 (247)
T PLN02552 56 HRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNE--VDRESE---LIDGNVLGVKNAAQRKLLHELG 130 (247)
T ss_pred EEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCcccccccccc--cccccc---ccccchhhHHHHHHhHHHHHhC
Confidence 3456778899999999999999988899999876 788888765310 000000 0000001146899999999999
Q ss_pred CCCCCCC--CCeeEEeeccc--cc------C----CceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchh
Q 022346 205 VPSESLC--NPLFIGISRRR--LN------V----RPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMA 270 (298)
Q Consensus 205 l~~~~~~--~p~~l~~~~~~--~~------~----~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~ 270 (298)
|.+..+. ...+++..... .. + +-...+++.......++. +++.|+.++.|++++++.++.
T Consensus 131 I~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~------lq~eEV~~~~wvs~~el~~~~ 204 (247)
T PLN02552 131 IPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVN------PNPDEVADVKYVNREELKEMM 204 (247)
T ss_pred CCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecCCCccc------CCHHHhheEEEEeHHHHHHHH
Confidence 9865432 12244422111 10 1 111111222212223444 677899999999999999986
Q ss_pred c
Q 022346 271 S 271 (298)
Q Consensus 271 ~ 271 (298)
.
T Consensus 205 ~ 205 (247)
T PLN02552 205 R 205 (247)
T ss_pred h
Confidence 4
No 75
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.37 E-value=8e-12 Score=103.99 Aligned_cols=108 Identities=19% Similarity=0.222 Sum_probs=72.0
Q ss_pred CCcccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhC
Q 022346 125 SPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG 204 (298)
Q Consensus 125 ~~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG 204 (298)
++-.|+++.++ ++++||+++... .|++|||++|++|++ .+||+||++||||
T Consensus 23 ~~~~V~ii~~~-~~~~LL~~~~~~------~~elPgG~vE~gEt~----------------------~eaA~REl~EETG 73 (156)
T TIGR02705 23 NPNHVLVIPRY-KDQWLLTEHKRR------GLEFPGGKVEPGETS----------------------KEAAIREVMEETG 73 (156)
T ss_pred CCCEEEEEEEE-CCEEEEEEEcCC------cEECCceecCCCCCH----------------------HHHHHHHHHHHhC
Confidence 35566666664 558999987643 499999999999994 6999999999999
Q ss_pred CCCCCCCCCeeEEeecccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceE-EEcHHHHhchhccC
Q 022346 205 VPSESLCNPLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLF-AVSMIELENMASKM 273 (298)
Q Consensus 205 l~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~-wv~~~el~~l~~~~ 273 (298)
+.+..+. +++.............+++.+.....+ ..+|..+.. +++++++.++....
T Consensus 74 ~~~~~~~---~lg~~~~~~~~~~~~~~vf~A~~~~~~---------~~~e~~E~~~~~~~~~~~~~~~~g 131 (156)
T TIGR02705 74 AIVKELH---YIGQYEVEGESTDFVKDVYFAEVSALE---------SKDDYLETKGPVLLQEIPDIIKAD 131 (156)
T ss_pred cEeeeeE---EEEEEEecCCCcEEEEEEEEEEEeccc---------cCCCceeeEeEEEHHHHHHHHhcC
Confidence 9887776 777643322222222222333223221 124666677 79999998876443
No 76
>PRK10880 adenine DNA glycosylase; Provisional
Probab=99.37 E-value=2.7e-14 Score=133.22 Aligned_cols=134 Identities=16% Similarity=0.160 Sum_probs=90.6
Q ss_pred CCCCCCceEEEeccCCCCCCCCCcchhhHHHHHHHHHHhh--CcCCcCC--cceeeeceEeecCCCCCCcceEEEEecCc
Q 022346 17 HGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQI--NKSLFNG--QKFRYGGHIMRGEGGSSVESHVCLHLGLT 92 (298)
Q Consensus 17 ~g~~~~~v~~~~s~~f~~~p~p~~~~~~~I~~~w~~~~~~--~p~lfng--~~f~~~~~~~~~~~~~~~~~~~~l~lg~T 92 (298)
||||++|++++++.+|++ |.|. +|.+|.|+..|...- .+. ... +.++-....+.+.+.++++|++.|++|.+
T Consensus 115 pGIG~~TA~aIl~~af~~-~~~i--VD~nV~RV~~Rl~~i~~~~~-~~~~~~~l~~~~~~l~p~~~~~~~nqalm~lGa~ 190 (350)
T PRK10880 115 PGVGRSTAGAILSLSLGK-HFPI--LDGNVKRVLARCYAVSGWPG-KKEVENRLWQLSEQVTPAVGVERFNQAMMDLGAM 190 (350)
T ss_pred CCccHHHHHHHHHHHCCC-Ceec--ccHHHHHHHHHHhcccCCCC-hHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhHH
Confidence 899999999999999999 7665 899999999997541 111 111 11322222333445677899999999999
Q ss_pred ccccccccCCCcchhhcc----CCCCchh------hhhcc-ccCCcccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCC
Q 022346 93 DYRTFVGTNLNPLWEKFL----VPSEDDV------IQCQH-TASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPG 160 (298)
Q Consensus 93 ~yr~~v~T~~~p~~~~~~----~~~~~~~------~~~~~-~~~~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PG 160 (298)
+||+.+|.|..|. |...... .+... ........++++..+++++|.||... +.++|+|+||+
T Consensus 191 -----vC~p~~P~C~~Cpl~~~C~~~~~~~~~~~P~k~~k~~~~~~~~~~~~~~~~~~~~l~~r~~~-gl~~gl~~fP~ 263 (350)
T PRK10880 191 -----VCTRSKPKCELCPLQNGCIAYANHSWALYPGKKPKQTLPERTGYFLLLQHGDEVWLEQRPPS-GLWGGLFCFPQ 263 (350)
T ss_pred -----hccCCCCCCCCCccHhhhHHHHcCCHhhCCCCCCCCCCCeEEEEEEEEEECCEEEEEECCcc-ChhhccccCCC
Confidence 9999999998763 2221111 11111 11122233344456789999888866 68999999996
No 77
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.36 E-value=3.4e-12 Score=101.70 Aligned_cols=99 Identities=22% Similarity=0.259 Sum_probs=65.7
Q ss_pred cEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCC
Q 022346 129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE 208 (298)
Q Consensus 129 V~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~ 208 (298)
|.++++ .++++||+++.. +.|++|||++|++|+ ..+||+||++||||+.+.
T Consensus 3 v~vi~~-~~~~vLl~~~~~------~~w~lPgG~ve~gE~----------------------~~~aa~REl~EE~G~~~~ 53 (118)
T cd04665 3 VLVICF-YDDGLLLVRHKD------RGWEFPGGHVEPGET----------------------IEEAARREVWEETGAELG 53 (118)
T ss_pred EEEEEE-ECCEEEEEEeCC------CEEECCccccCCCCC----------------------HHHHHHHHHHHHHCCccC
Confidence 445555 468999998862 579999999999998 469999999999999997
Q ss_pred CCCCCeeEEeecccccC-CceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHH
Q 022346 209 SLCNPLFIGISRRRLNV-RPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIEL 266 (298)
Q Consensus 209 ~~~~p~~l~~~~~~~~~-~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el 266 (298)
.+. +++........ .....+|+.. ....+.. ....|.....|++.+..
T Consensus 54 ~~~---~l~~~~~~~~~~~~~~~~y~a~-~~~~~~~------~~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 54 SLT---LVGYYQVDLFESGFETLVYPAV-SAQLEEK------ASYLETDGPVLFKNEPE 102 (118)
T ss_pred ceE---EEEEEEecCCCCcEEEEEEEEE-EEecccc------cccccccCcEEeccCCc
Confidence 666 66654322211 2222223222 2222211 23468899999986544
No 78
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.36 E-value=5.1e-12 Score=101.29 Aligned_cols=49 Identities=20% Similarity=0.294 Sum_probs=40.0
Q ss_pred CeEEEEEecCC--CCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCC
Q 022346 138 KKILLLQRSNN--VGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE 208 (298)
Q Consensus 138 g~vLl~rRs~~--~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~ 208 (298)
.+|||++|... .....|.|++|||++|.+|+ ..+||+||++||||+.+.
T Consensus 15 ~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~----------------------~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 15 IEVLLVHPGGPFWANKDLGAWSIPKGEYTEGED----------------------PLLAAKREFSEETGFCVD 65 (126)
T ss_pred EEEEEEEccCccccCCCCCEEECCcccCCCCcC----------------------HHHHHHHHHHHHhCCcce
Confidence 36999987432 12346899999999999998 469999999999999876
No 79
>PLN02791 Nudix hydrolase homolog
Probab=99.33 E-value=9.5e-12 Score=125.81 Aligned_cols=117 Identities=15% Similarity=0.201 Sum_probs=79.9
Q ss_pred cccEEEEEeC-CCeEEEEEecCCCCCCCCcEEc-CCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhC
Q 022346 127 LGNGAVVETS-DKKILLLQRSNNVGEFPGHFVF-PGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG 204 (298)
Q Consensus 127 ~gV~~vl~~~-dg~vLl~rRs~~~~~~~g~w~~-PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG 204 (298)
.+|.++|++. +|+|||+||+.....+||+|++ ||||++.||+. .+||+||+.||+|
T Consensus 33 rAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~----------------------~eAA~REL~EELG 90 (770)
T PLN02791 33 RAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTS----------------------LLSAQRELEEELG 90 (770)
T ss_pred EEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCH----------------------HHHHHHHHHHHhC
Confidence 4456777875 6999999999998889999998 79999999984 5899999999999
Q ss_pred CCCCCCCCCeeEEeeccc---cc-CCc----eEEEEEEec--CChhhHHhhhccCCCCCcccceEEEcHHHHhchhcc
Q 022346 205 VPSESLCNPLFIGISRRR---LN-VRP----AAFFFIKCS--LQSNEIQQLYSTAQDGYESTQLFAVSMIELENMASK 272 (298)
Q Consensus 205 l~~~~~~~p~~l~~~~~~---~~-~~~----~~~~~~~~~--~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~~ 272 (298)
|.+..- ...+++..... .. ... ..+|++... ....++. +++.|+.++.||+++|+.++...
T Consensus 91 I~l~~~-~l~~l~~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~------lq~eEV~~v~wvsl~El~~~l~~ 161 (770)
T PLN02791 91 IILPKD-AFELLFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFT------LQESEVSAVKYMSIEEYKSALAK 161 (770)
T ss_pred CCCChh-heeeeeeEEEEeeccCCCcceeeEEEEEEEEECCCCCcccCC------CChhhhheeEEEcHHHHHHHHhc
Confidence 986432 11244432111 01 111 112222211 1111222 56779999999999999988754
No 80
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.27 E-value=3.7e-12 Score=113.87 Aligned_cols=102 Identities=24% Similarity=0.331 Sum_probs=77.0
Q ss_pred EEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCCCCC
Q 022346 132 VVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLC 211 (298)
Q Consensus 132 vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~~~ 211 (298)
+++..++++||.++.++. +|++..-+|.||+||+ +++|+.||++||+||.+..++
T Consensus 149 v~v~~~~~ilLa~~~~h~---~g~yS~LAGFVE~GET----------------------lE~AV~REv~EE~Gi~V~~vr 203 (279)
T COG2816 149 VAVIRGDEILLARHPRHF---PGMYSLLAGFVEPGET----------------------LEQAVAREVFEEVGIKVKNVR 203 (279)
T ss_pred EEEecCCceeecCCCCCC---CcceeeeeecccCCcc----------------------HHHHHHHHHHHhhCeEEeeee
Confidence 344456678999888763 8999999999999999 789999999999999999987
Q ss_pred CCeeEEeecccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 212 NPLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 212 ~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
+++...+.++..-..-|+ ....+++++ .|..|..+..|++.+|+..+
T Consensus 204 ---Y~~SQPWPfP~SLMigf~--aey~sgeI~------~d~~Eleda~WFs~~evl~~ 250 (279)
T COG2816 204 ---YVGSQPWPFPHSLMLGFM--AEYDSGEIT------PDEGELEDARWFSRDEVLPA 250 (279)
T ss_pred ---EEeccCCCCchhhhhhhe--eeecccccc------CCcchhhhccccCHhHHhhh
Confidence 777644444332222222 223456676 77789999999999995543
No 81
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.23 E-value=5.7e-11 Score=101.62 Aligned_cols=54 Identities=26% Similarity=0.517 Sum_probs=42.9
Q ss_pred cccEEEEEeCCC---eEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhh
Q 022346 127 LGNGAVVETSDK---KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEI 203 (298)
Q Consensus 127 ~gV~~vl~~~dg---~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEt 203 (298)
.+.++++..+++ +||++||.. .|.|.+|||++|++|+ +.+||+||+.|||
T Consensus 35 ~~~~~i~~~~~~~~l~vLl~~r~~-----~g~walPGG~v~~~E~----------------------~~~aa~Rel~EEt 87 (186)
T cd03670 35 SGDGSIHPKSGKPILQFVAIKRPD-----SGEWAIPGGMVDPGEK----------------------ISATLKREFGEEA 87 (186)
T ss_pred CCCEEEEecCCCCeeEEEEEEeCC-----CCcCcCCeeeccCCCC----------------------HHHHHHHHHHHHH
Confidence 355566665433 788888854 4899999999999998 5799999999999
Q ss_pred CCCC
Q 022346 204 GVPS 207 (298)
Q Consensus 204 Gl~~ 207 (298)
|+.+
T Consensus 88 ~l~l 91 (186)
T cd03670 88 LNSL 91 (186)
T ss_pred cccc
Confidence 7754
No 82
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.21 E-value=7.5e-11 Score=94.78 Aligned_cols=51 Identities=27% Similarity=0.416 Sum_probs=38.0
Q ss_pred cEEEEEeCCC--eEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCC
Q 022346 129 NGAVVETSDK--KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (298)
Q Consensus 129 V~~vl~~~dg--~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (298)
|++++...++ +|++.|.. . +.|.+|||++|++|+ +.+||+||++||||+.
T Consensus 3 ~~~~~~~~~~~~~ll~~r~~-~-----~~~~lPgG~ve~~E~----------------------~~~aa~Rel~EEtGl~ 54 (126)
T cd04663 3 CPAVLRRNGEVLELLVFEHP-L-----AGFQIVKGTVEPGET----------------------PEAAALRELQEESGLP 54 (126)
T ss_pred EEEEEEeCCceEEEEEEEcC-C-----CcEECCCccCCCCCC----------------------HHHHHHHHHHHHHCCe
Confidence 3455554443 55555443 2 359999999999998 4799999999999998
Q ss_pred C
Q 022346 207 S 207 (298)
Q Consensus 207 ~ 207 (298)
.
T Consensus 55 ~ 55 (126)
T cd04663 55 S 55 (126)
T ss_pred e
Confidence 6
No 83
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=99.18 E-value=3.6e-13 Score=123.48 Aligned_cols=141 Identities=14% Similarity=0.215 Sum_probs=103.1
Q ss_pred CCCCCCCceEEEeccCCCCCCCCCcchhhHHHHHHHHHHhhCcCCc---CCcceeeeceEeecCCC-CCCcceEEEEecC
Q 022346 16 PHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLF---NGQKFRYGGHIMRGEGG-SSVESHVCLHLGL 91 (298)
Q Consensus 16 ~~g~~~~~v~~~~s~~f~~~p~p~~~~~~~I~~~w~~~~~~~p~lf---ng~~f~~~~~~~~~~~~-~~~~~~~~l~lg~ 91 (298)
=||||+||+++++|.+||+ |.|. +|+||+||++|..+-....- .-++++-....+..++. ++++|++.|++|+
T Consensus 118 LpGiG~yTa~Ail~~a~~~-~~~~--lDgNV~RVl~R~f~i~~~~~~~~~~~~~~~~~~~ll~p~~~~~~fnqammdlGA 194 (342)
T COG1194 118 LPGVGPYTAGAILSFAFNQ-PEPV--LDGNVKRVLSRLFAISGDIGKPKTKKELWELAEQLLTPDRRPGDFNQAMMDLGA 194 (342)
T ss_pred CCCCcHHHHHHHHHHHhCC-CCce--eecchheeehhhhcccccccccchhHHHHHHHHHhcCCCCChHHHHHHHHHhhh
Confidence 4899999999999999999 8877 99999999999998443222 34456655556444444 7899999999999
Q ss_pred cccccccccCCCcchhhccCC------CCch----hhhhccccC-CcccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCC
Q 022346 92 TDYRTFVGTNLNPLWEKFLVP------SEDD----VIQCQHTAS-PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPG 160 (298)
Q Consensus 92 T~yr~~v~T~~~p~~~~~~~~------~~~~----~~~~~~~~~-~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PG 160 (298)
+ |||+.+|.|..|.-. ..+. +.+...... ....+.++...||++++.||... +.+.|+|+||.
T Consensus 195 ~-----ICt~~~P~C~~CPl~~~c~a~~~g~~~~~P~k~~k~~~~~~~~~~~~~~~~~~~~l~kr~~~-gl~~gl~~fP~ 268 (342)
T COG1194 195 T-----ICTAKKPKCSLCPLRDNCAAYRNGTPEKYPVKKPKKKLPRRFAAFLILNRDGEVLLEKRPEK-GLLGGLWCFPQ 268 (342)
T ss_pred H-----hhcCCCCCCCcCcchHHHHHHHcCCcccCCCcCcccccchheeeEEEEccCcchhhhhCccc-Cceeccccccc
Confidence 9 999999999866211 1111 111111111 33345566778999999998877 58999999998
Q ss_pred cccCC
Q 022346 161 GHPEP 165 (298)
Q Consensus 161 G~vE~ 165 (298)
...+.
T Consensus 269 ~e~~~ 273 (342)
T COG1194 269 FEDEA 273 (342)
T ss_pred ccccc
Confidence 76544
No 84
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.17 E-value=8.4e-12 Score=112.02 Aligned_cols=107 Identities=20% Similarity=0.236 Sum_probs=71.8
Q ss_pred cEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCC
Q 022346 129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE 208 (298)
Q Consensus 129 V~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~ 208 (298)
|-.+|++.||+.+|..|..+ ..+|+|..++|.+||||+ +++|++||++|||||.++
T Consensus 190 VIm~li~~d~~~~LL~R~~r--~~~gl~t~lAGFlEpGES----------------------~eeav~REtwEEtGi~V~ 245 (345)
T KOG3084|consen 190 VIMLLIDHDGKHALLGRQKR--YPPGLWTCLAGFLEPGES----------------------IEEAVRRETWEETGIEVE 245 (345)
T ss_pred EEEEEEcCCCCEeeeecccC--CCCchhhhhhccCCcccc----------------------HHHHHHHHHHHHhCceee
Confidence 33446678887777777544 568999999999999999 789999999999999999
Q ss_pred CCCCCeeEEeecccccCCceEE--EEEEecCChhhHHhhhccCCCCC-cccceEEEcHHHHhchh
Q 022346 209 SLCNPLFIGISRRRLNVRPAAF--FFIKCSLQSNEIQQLYSTAQDGY-ESTQLFAVSMIELENMA 270 (298)
Q Consensus 209 ~~~~p~~l~~~~~~~~~~~~~~--~~~~~~~~~~ev~~~~~~~~d~~-E~~~~~wv~~~el~~l~ 270 (298)
.+. +.....+. -.+..+ +++......+.+. .|.+ |..+.+|++.+++.+..
T Consensus 246 ~I~---~~asQPWP--~~p~SLMIgc~ala~~~~~I~------vd~dlEleDaqwF~r~ev~~aL 299 (345)
T KOG3084|consen 246 VIS---YVASQPWP--LMPQSLMIGCLALAKLNGKIS------VDKDLELEDAQWFDREEVKSAL 299 (345)
T ss_pred eEe---eeecCCCC--CCchHHHHHHHHHHhhCCccc------cCcchhhhhcccccHHHHHHHH
Confidence 876 43322122 111111 1111111112232 5555 88999999999987644
No 85
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=99.15 E-value=1.6e-10 Score=100.10 Aligned_cols=112 Identities=24% Similarity=0.344 Sum_probs=76.9
Q ss_pred CcccEEEEEeC-C--CeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhh
Q 022346 126 PLGNGAVVETS-D--KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEE 202 (298)
Q Consensus 126 ~~gV~~vl~~~-d--g~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EE 202 (298)
.-+|.+.+++. + -.|||.||+++...++|..+||||+.|+.|.. -..+|+||.+||
T Consensus 43 ~~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s---------------------~~~tAlREt~EE 101 (246)
T KOG3069|consen 43 KAAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKS---------------------DIQTALRETEEE 101 (246)
T ss_pred CccEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccc---------------------hHHHHHHHHHHH
Confidence 44555445443 2 37999999999999999999999999999874 248999999999
Q ss_pred hCCCCCCCCCCeeEEee-----cccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhc
Q 022346 203 IGVPSESLCNPLFIGIS-----RRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELEN 268 (298)
Q Consensus 203 tGl~~~~~~~p~~l~~~-----~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~ 268 (298)
+|++.+... .+|.. +...+.++...|........ ... ....|+.++.|||++++..
T Consensus 102 IGl~~~~~~---~~g~l~~~~~r~~~~v~p~v~~l~~~~~l~-~~~------ln~gEv~~~F~VPL~~ll~ 162 (246)
T KOG3069|consen 102 IGLDPELVD---VLGALPPFVLRSGWSVFPVVGFLSDKKILP-SLR------LNSGEVESAFWVPLTDLLL 162 (246)
T ss_pred hCCCHHHhh---hhhhccceeeccCcccceeEEEEecccccc-ccc------CCchheeeeeeeeHHHHhh
Confidence 999986654 33321 11223344444432221111 111 4567999999999999975
No 86
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.07 E-value=8e-10 Score=88.84 Aligned_cols=102 Identities=24% Similarity=0.300 Sum_probs=62.6
Q ss_pred CeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCCC--CCCCee
Q 022346 138 KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSES--LCNPLF 215 (298)
Q Consensus 138 g~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~--~~~p~~ 215 (298)
+++|+.+|.... +.|.||||++|++|+. ..+||+||+.||||+.+.. .. .
T Consensus 24 ~~vl~~~~~~~~----~~~~~PgG~ve~~e~~---------------------~~~aa~RE~~EEtGl~~~~~~~~---~ 75 (161)
T COG0494 24 GEVLLAQRRDDG----GLWELPGGKVEPGEEL---------------------PEEAAARELEEETGLRVKDERLE---L 75 (161)
T ss_pred CEEeEEEccccC----CceecCCcccCCCCch---------------------HHHHHHHHHHHHhCCeeeeecce---e
Confidence 789888888662 7999999999999984 1249999999999999884 33 4
Q ss_pred EEeecccccCC-----ceEEEEEEecCC--hh-hHHhhhccCCCCCcccceEEEcHHHHhchh
Q 022346 216 IGISRRRLNVR-----PAAFFFIKCSLQ--SN-EIQQLYSTAQDGYESTQLFAVSMIELENMA 270 (298)
Q Consensus 216 l~~~~~~~~~~-----~~~~~~~~~~~~--~~-ev~~~~~~~~d~~E~~~~~wv~~~el~~l~ 270 (298)
++......... .....++..... .. .+. .......|...+.|++++++....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~~~~~~~~~~~~ 135 (161)
T COG0494 76 LGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIE---GLSAPSEELEDLEWVPLDELAALV 135 (161)
T ss_pred eeeccCcccCcccccceEEEEEEeeecccccccccc---ccCCCcchhhceeeeeHHHccccc
Confidence 44432221111 111111111111 11 111 000113578899999999888764
No 87
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=99.00 E-value=3e-09 Score=83.49 Aligned_cols=98 Identities=19% Similarity=0.277 Sum_probs=67.8
Q ss_pred EEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCCCCC
Q 022346 132 VVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLC 211 (298)
Q Consensus 132 vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~~~ 211 (298)
+++..+|++||.||... +.++|+|+||||.++.+++. .++..||+.+|.++ ...
T Consensus 8 ~ii~~~~~~ll~kR~~~-gl~~glwefP~~~~~~~~~~----------------------~~~~~~~~~~~~~~---~~~ 61 (118)
T cd03431 8 VVIRNDGRVLLEKRPEK-GLLAGLWEFPSVEWEEEADG----------------------EEALLSALKKALRL---SLE 61 (118)
T ss_pred EEEecCCeEEEEECCCC-CCCCcceeCCCccccCCcCH----------------------HHHHHHHHHHHhCc---ccc
Confidence 34446789999999766 68999999999998887763 47777898888765 112
Q ss_pred CCeeEEeecccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 212 NPLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 212 ~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
.++.+.+.++++.....++.+....+. .+..++.|++++++.++
T Consensus 62 ---~~~~~~H~fth~~~~~~~~~~~~~~~~-----------~~~~~~~W~~~eel~~~ 105 (118)
T cd03431 62 ---PLGTVKHTFTHFRLTLHVYLARLEGDL-----------LAPDEGRWVPLEELDEY 105 (118)
T ss_pred ---cceeEEEecCCeEEEEEEEEEEEeCCC-----------cCccccEEccHHHHhhC
Confidence 344555666666555555555433211 13457799999999876
No 88
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=98.97 E-value=1.7e-11 Score=111.30 Aligned_cols=136 Identities=13% Similarity=0.188 Sum_probs=91.4
Q ss_pred CCCCCCceEEEeccCCCCCCCCCcchhhHHHHHHHHHHhhCc-CCc--CCcceeeeceEeecCCCCCCcceEEEEecCcc
Q 022346 17 HGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINK-SLF--NGQKFRYGGHIMRGEGGSSVESHVCLHLGLTD 93 (298)
Q Consensus 17 ~g~~~~~v~~~~s~~f~~~p~p~~~~~~~I~~~w~~~~~~~p-~lf--ng~~f~~~~~~~~~~~~~~~~~~~~l~lg~T~ 93 (298)
||||++|++++++.+|++ |.|. +|.+|.|+.+|...-.. .-. ..+.++.....+.+.+.++++|++.|++|.+
T Consensus 111 pGIG~~TA~~Il~~a~~~-~~~~--vD~~v~RVl~Rl~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~~~n~alm~lG~~- 186 (275)
T TIGR01084 111 PGVGRYTAGAILSFALNK-PYPI--LDGNVKRVLSRLFAVEGWPGKKKVENRLWTLAESLLPKADPEAFNQALMDLGAM- 186 (275)
T ss_pred CCCCHHHHHHHHHHHCCC-CCCc--chHhHHHHHHHHccCcCCCCHHHHHHHHHHHHHHHCChhhHHHHHHHHHHHhHH-
Confidence 799999999999999999 7766 99999999999854211 101 1111222223344445677899999999999
Q ss_pred cccccccCCCcchhhcc----CCCCchh------hhhc-cccCCcccEE-EEEeCCCeEEEEEecCCCCCCCCcEEcCCc
Q 022346 94 YRTFVGTNLNPLWEKFL----VPSEDDV------IQCQ-HTASPLGNGA-VVETSDKKILLLQRSNNVGEFPGHFVFPGG 161 (298)
Q Consensus 94 yr~~v~T~~~p~~~~~~----~~~~~~~------~~~~-~~~~~~gV~~-vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG 161 (298)
+||+.+|.|..|. |...... .+.. .......+.+ ++...+|++|+.||... +.+.|+|+||+.
T Consensus 187 ----vC~~~~P~C~~Cpl~~~C~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~gl~~~p~~ 261 (275)
T TIGR01084 187 ----ICTRKKPKCDLCPLQDFCLAYQQGTWEEYPVKKPKAAPPERTTYFLVLQNYDGEVLLEQRPEK-GLWGGLYCFPQF 261 (275)
T ss_pred ----HcCCCCCCCCCCCChhhCHHHHcCCHhhcCCCCCCCCCCeEEEEEEEEEeCCCeEEEEeCCCC-chhhccccCCCC
Confidence 9999999998773 2221111 1111 1111222333 34456889999999766 589999999973
No 89
>PRK13910 DNA glycosylase MutY; Provisional
Probab=98.96 E-value=3.8e-11 Score=109.44 Aligned_cols=131 Identities=10% Similarity=0.142 Sum_probs=86.6
Q ss_pred CCCCCCceEEEeccCCCCCCCCCcchhhHHHHHHHHHHhhCcCCcCCcceeeeceEeecCCCCCCcceEEEEecCccccc
Q 022346 17 HGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQKFRYGGHIMRGEGGSSVESHVCLHLGLTDYRT 96 (298)
Q Consensus 17 ~g~~~~~v~~~~s~~f~~~p~p~~~~~~~I~~~w~~~~~~~p~lfng~~f~~~~~~~~~~~~~~~~~~~~l~lg~T~yr~ 96 (298)
||||++|++++++.+|++ |.+. +|.+|.|+..|...-.... +-..++.....+.+.+.+.++|++.|++|.+
T Consensus 78 pGIG~kTA~aIl~~af~~-~~~~--VD~nV~RVl~Rl~g~~~~~-~~~~l~~~~~~~l~~~~~~~~nqaLm~~Ga~---- 149 (289)
T PRK13910 78 PGIGAYTANAILCFGFRE-KSAC--VDANIKRVLLRLFGLDPNI-HAKDLQIKANDFLNLNESFNHNQALIDLGAL---- 149 (289)
T ss_pred CCCCHHHHHHHHHHHCCC-CcCc--ccHHHHHHHHHHhcCCCCc-cHHHHHHHHHHhCCccchHHHHHHHHHHhHH----
Confidence 799999999999999999 7664 9999999999975422110 1122332222333445567889999999999
Q ss_pred ccccCCCcchhhcc----CCCCchh----hhhccccCC-cccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCC
Q 022346 97 FVGTNLNPLWEKFL----VPSEDDV----IQCQHTASP-LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPG 160 (298)
Q Consensus 97 ~v~T~~~p~~~~~~----~~~~~~~----~~~~~~~~~-~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PG 160 (298)
+||+ +|.|..|. |.+...+ .+......+ ....++++ .+++++|.||. . +.+.|+|+||+
T Consensus 150 -iC~~-~P~C~~CPl~~~C~~~~~~~~~~~~~kk~~~~~~~~~~~~~-~~~~~ll~kr~-~-~l~~gl~~fP~ 217 (289)
T PRK13910 150 -ICSP-KPKCAICPLNPYCLGKNNPEKHTLKKKQEIVQEERYLGVVI-QNNQIALEKIE-Q-KLYLGMHHFPN 217 (289)
T ss_pred -HcCC-CCCCCCCcChhhhhhhhcCCccccCCCCCCCceEEEEEEEE-ECCEEEEEECC-C-chhcccccCCC
Confidence 9999 79998763 3322111 111111111 11233444 57899998884 3 58999999996
No 90
>KOG2457 consensus A/G-specific adenine DNA glycosylase [Replication, recombination and repair]
Probab=98.89 E-value=3e-10 Score=104.47 Aligned_cols=84 Identities=11% Similarity=0.179 Sum_probs=70.9
Q ss_pred CCCCCCceEEEeccCCCCCCCCCcchhhHHHHHHHHHHhh----CcCCcCCcceeeeceEeecCCCCCCcceEEEEecCc
Q 022346 17 HGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQI----NKSLFNGQKFRYGGHIMRGEGGSSVESHVCLHLGLT 92 (298)
Q Consensus 17 ~g~~~~~v~~~~s~~f~~~p~p~~~~~~~I~~~w~~~~~~----~p~lfng~~f~~~~~~~~~~~~~~~~~~~~l~lg~T 92 (298)
||+|+||+++++|++||+ +.-+ +|+||.++..|.++- .+.+|+.....+ ..++.|+..|+||||+.|.||+|
T Consensus 212 pGVG~YTAGAiaSIAf~q-~tGi--VDGNVirvlsRalAIhsDcSkgk~~q~~wkL-A~qLVDP~RPGDFNQalMELGAt 287 (555)
T KOG2457|consen 212 PGVGQYTAGAIASIAFNQ-VTGI--VDGNVIRVLSRALAIHSDCSKGKFFQSSWKL-AAQLVDPSRPGDFNQALMELGAT 287 (555)
T ss_pred CCCCccchhhhhhhhhcC-cccc--cccchHHHhHHhHhhcCCcchhhHHHHHHHH-HHHhcCCCCCCcHHHHHHHhcCe
Confidence 899999999999999999 6444 899999999999983 234677666555 34566789999999999999999
Q ss_pred ccccccccCCCcchhhc
Q 022346 93 DYRTFVGTNLNPLWEKF 109 (298)
Q Consensus 93 ~yr~~v~T~~~p~~~~~ 109 (298)
+||+.+|.|..|
T Consensus 288 -----~CTpq~P~CS~C 299 (555)
T KOG2457|consen 288 -----LCTPQKPSCSSC 299 (555)
T ss_pred -----eccCCCCCcCCC
Confidence 999999998855
No 91
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=98.80 E-value=1.5e-08 Score=84.08 Aligned_cols=117 Identities=17% Similarity=0.191 Sum_probs=81.7
Q ss_pred cccEEEEEeCCCeEEEEEecCCCCCCCCcEE-cCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCC
Q 022346 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFV-FPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (298)
Q Consensus 127 ~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~-~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (298)
.+..+.|++.+|++|+.||+..+..+||.|. --.||+-++|+. .+|++|-+.+|+||
T Consensus 34 rAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~----------------------~~A~~rRl~~ELGi 91 (185)
T COG1443 34 RAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESN----------------------EDAARRRLAYELGI 91 (185)
T ss_pred hhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCch----------------------HHHHHHHHHHHhCC
Confidence 3457789999999999999999889999997 568999999984 59999999999999
Q ss_pred CCCCCCCCeeEEeec--ccc-cCC--ceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchhcc
Q 022346 206 PSESLCNPLFIGISR--RRL-NVR--PAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMASK 272 (298)
Q Consensus 206 ~~~~~~~p~~l~~~~--~~~-~~~--~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~~ 272 (298)
.........++.-+. ..+ ++. ......+...+.+ .+. .+++|+.+++|++++++.++...
T Consensus 92 e~~~~d~~~il~rf~YrA~~~~~~~E~Eic~V~~~~~~~-~~~------~npdEV~~~~wv~~e~l~~~~~~ 156 (185)
T COG1443 92 EPDQYDKLEILPRFRYRAADPDGIVENEICPVLAARLDS-ALD------PNPDEVMDYRWVSPEDLKEMVDA 156 (185)
T ss_pred CCcccCccccccceEEeccCCCCcceeeeeeEEEEeecC-CCC------CChHHhhheeccCHHHHHHhhcC
Confidence 998543111221111 111 111 1112222222232 333 66789999999999999988643
No 92
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.76 E-value=3.4e-09 Score=95.43 Aligned_cols=120 Identities=22% Similarity=0.324 Sum_probs=80.4
Q ss_pred hccccCCcccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhh
Q 022346 120 CQHTASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREV 199 (298)
Q Consensus 120 ~~~~~~~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl 199 (298)
+++.++-+||++.+++..++|++++-........|.|-+|+|.++++|+ +.++++||+
T Consensus 109 P~~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~----------------------i~~gavrEv 166 (295)
T KOG0648|consen 109 PANASHRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGED----------------------IWHGAVREV 166 (295)
T ss_pred CCchhhheeeeeeEecCCceeEEEEecccceeecccccccceEeccccc----------------------chhhhhhhh
Confidence 3455668999999998888999987544434678999999999999998 479999999
Q ss_pred hhhhCCCCCCCCCCeeEEeecccccC--CceEEEEEEecC--ChhhHHhhhccCCCCCcccceEEEcHHHHhchh
Q 022346 200 VEEIGVPSESLCNPLFIGISRRRLNV--RPAAFFFIKCSL--QSNEIQQLYSTAQDGYESTQLFAVSMIELENMA 270 (298)
Q Consensus 200 ~EEtGl~~~~~~~p~~l~~~~~~~~~--~~~~~~~~~~~~--~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~ 270 (298)
+||||++....+ .+..-+.+... ....-+|+.|.+ .+-++. ....|+....|+++++.....
T Consensus 167 keetgid~ef~e---Vla~r~~H~~~~~~~ksd~f~~c~L~p~s~~i~------~~~~ei~~~~Wmp~~e~v~qp 232 (295)
T KOG0648|consen 167 KEETGIDTEFVE---VLAFRRAHNATFGLIKSDMFFTCELRPRSLDIT------KCKREIEAAAWMPIEEYVSQP 232 (295)
T ss_pred HHHhCcchhhhh---HHHHHhhhcchhhcccccceeEEEeeccccccc------hhHHHHHHHhcccHHHhhccc
Confidence 999999655443 33322111111 101122333433 333333 344577788999999887643
No 93
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=98.75 E-value=2e-08 Score=81.03 Aligned_cols=108 Identities=20% Similarity=0.311 Sum_probs=68.9
Q ss_pred ccEEEEEeCCC---eEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhC
Q 022346 128 GNGAVVETSDK---KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG 204 (298)
Q Consensus 128 gV~~vl~~~dg---~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG 204 (298)
-+++|....++ +|||+.-++. +..|.||+|++|++|+. .+||+||+.||.|
T Consensus 11 vagCi~~r~~~~~ieVLlvsSs~~----~~~wi~PKGGwE~dE~~----------------------~eAA~REt~EEAG 64 (145)
T KOG2839|consen 11 VAGCICYRSDKEKIEVLLVSSSKK----PHRWIVPKGGWEPDESV----------------------EEAALRETWEEAG 64 (145)
T ss_pred EEEeeeeeecCcceEEEEEecCCC----CCCccCCCCCCCCCCCH----------------------HHHHHHHHHHHhC
Confidence 34566666665 6888877764 46899999999999984 6999999999999
Q ss_pred CCCCCCCCCeeEEeeccc--c--cCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 205 VPSESLCNPLFIGISRRR--L--NVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 205 l~~~~~~~p~~l~~~~~~--~--~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
+.-.... +++..... + ...+..+.|+.. .++++. .. +....|..+..|++++|..+.
T Consensus 65 v~G~l~~---~~~g~~~~~~~~~~~~~k~~~~~l~--v~e~le-~w--p~~~~~~r~r~W~~ledA~~~ 125 (145)
T KOG2839|consen 65 VKGKLGR---LLGGFEDFLSKKHRTKPKGVMYVLA--VTEELE-DW--PESEHEFREREWLKLEDAIEL 125 (145)
T ss_pred ceeeeec---cccchhhccChhhcccccceeehhh--hhhhcc-cC--hhhhcccceeEEeeHHHHHHH
Confidence 9776555 33332211 1 123333344322 112211 00 012335789999999998865
No 94
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=98.74 E-value=1.2e-07 Score=80.13 Aligned_cols=119 Identities=17% Similarity=0.071 Sum_probs=70.0
Q ss_pred CcccEEEEEeCCC--eEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhh
Q 022346 126 PLGNGAVVETSDK--KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEI 203 (298)
Q Consensus 126 ~~gV~~vl~~~dg--~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEt 203 (298)
.+++-+++. .|| .++|+++.+-. ...-..++|+|-+|.+|+ +..||+|||+|||
T Consensus 75 gVaIl~il~-~dG~~~ivL~kQfRpP-~Gk~ciElPAGLiD~ge~----------------------~~~aAiREl~EEt 130 (225)
T KOG3041|consen 75 GVAILAILE-SDGKPYIVLVKQFRPP-TGKICIELPAGLIDDGED----------------------FEGAAIRELEEET 130 (225)
T ss_pred eEEEEEEEe-cCCcEEEEEEEeecCC-CCcEEEEcccccccCCCc----------------------hHHHHHHHHHHHh
Confidence 333333333 577 58888887663 334456799999999998 4699999999999
Q ss_pred CCCCCCCCCCeeEEeecccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchh
Q 022346 204 GVPSESLCNPLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMA 270 (298)
Q Consensus 204 Gl~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~ 270 (298)
|+. ..+..-.........+.+-......+.......|-+ +-....+..|+.++.-++..+|.+..
T Consensus 131 Gy~-gkv~~~s~~~f~DPGltn~~~~iv~v~idg~~pEnq-rp~q~ledgEfIev~~i~~~~L~~~~ 195 (225)
T KOG3041|consen 131 GYK-GKVDMVSPTVFLDPGLTNCNLCIVVVDIDGDVPENQ-RPVQQLEDGEFIEVFLIPLSELWREL 195 (225)
T ss_pred Ccc-ceeeeccccEEcCCCCCCCceEEEEEEecCCCcccc-CccccCCCCceEEEEEeeHHHHHHHH
Confidence 998 332211122222222222111122233322222211 11113677899999999999887654
No 95
>PLN02839 nudix hydrolase
Probab=98.55 E-value=4.9e-07 Score=84.19 Aligned_cols=106 Identities=14% Similarity=0.201 Sum_probs=76.5
Q ss_pred CeEEEEEecCCCCCCCCcEE-cCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCCCCCCCeeE
Q 022346 138 KKILLLQRSNNVGEFPGHFV-FPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLCNPLFI 216 (298)
Q Consensus 138 g~vLl~rRs~~~~~~~g~w~-~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~~~~p~~l 216 (298)
+++.+.||+..+..+||+|+ +-||.+..||+ ++++++||+.||.||+........-.
T Consensus 218 ~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGes----------------------p~etliREa~EEAgLp~~l~~~~~~~ 275 (372)
T PLN02839 218 KFLWIGKRSLSKSTYPGMLDHLVAGGLPHGIS----------------------CGENLVKECEEEAGISKAIADRAIAV 275 (372)
T ss_pred eEEEeeccCCCCCCCCChhhhccccCccCCCC----------------------HHHHHHHHHHHHcCCCHHHHhcceEe
Confidence 57999999999989999998 68999999998 47999999999999986533222234
Q ss_pred Eeeccc----ccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchh
Q 022346 217 GISRRR----LNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMA 270 (298)
Q Consensus 217 ~~~~~~----~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~ 270 (298)
|.+.+. ..-++...|.|.+.+..+-+ . ...+.|+.++.+++++|+.+..
T Consensus 276 G~VsY~~~~~~g~~~evly~YDLeLP~df~----P-~~qDGEVe~F~Lm~v~EV~~~l 328 (372)
T PLN02839 276 GAVSYMDIDQYCFKRDVLFCYDLELPQDFV----P-KNQDGEVESFKLIPVAQVANVI 328 (372)
T ss_pred EEEEEEEEcCCccccCEEEEeeeecCCccc----c-CCCccceeEEEEecHHHHHHHH
Confidence 443221 11245555656665554321 1 1445699999999999998765
No 96
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.47 E-value=3e-07 Score=72.40 Aligned_cols=102 Identities=19% Similarity=0.282 Sum_probs=61.5
Q ss_pred EEEEeCCCeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCCCC
Q 022346 131 AVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL 210 (298)
Q Consensus 131 ~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~~ 210 (298)
+++++.+|++||.||... +.++|+|+||.--.+..+. .+.+.+.+.+..|+.+...
T Consensus 2 ~~i~~~~~~~Ll~kRp~~-gll~GLwefP~~e~~~~~~-----------------------~~~l~~~~~~~~~~~~~~~ 57 (114)
T PF14815_consen 2 LLIIRSQGRVLLEKRPEK-GLLAGLWEFPLIESDEEDD-----------------------EEELEEWLEEQLGLSIRSV 57 (114)
T ss_dssp EEEEETTSEEEEEE--SS-STTTT-EE--EEE-SSS-C-----------------------HHHHHHHTCCSSS-EEEE-
T ss_pred EEEEEeCCEEEEEECCCC-ChhhcCcccCEeCccCCCC-----------------------HHHHHHHHHHHcCCChhhh
Confidence 467789999999999876 6999999999977663332 2556666778888876555
Q ss_pred CCCeeEEeecccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 211 CNPLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 211 ~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
. .++.+.+.++++.....++.+........ +..+..|++.+++.++
T Consensus 58 ~---~~~~v~H~fSH~~~~~~~~~~~~~~~~~~----------~~~~~~W~~~~~l~~~ 103 (114)
T PF14815_consen 58 E---PLGTVKHVFSHRRWTIHVYEVEVSADPPA----------EPEEGQWVSLEELDQY 103 (114)
T ss_dssp S----SEEEEEE-SSEEEEEEEEEEEEE-SS--------------TTEEEEEGGGGGGS
T ss_pred e---ecCcEEEEccceEEEEEEEEEEecCCCCC----------CCCCcEEEEHHHHhhC
Confidence 4 45556677777665555555544432111 3468899999999875
No 97
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.39 E-value=0.00011 Score=62.59 Aligned_cols=122 Identities=20% Similarity=0.237 Sum_probs=76.9
Q ss_pred cEEEEEeCCCeEEEEEecCCCCCCCCcEE-cCCcccC--CCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCC
Q 022346 129 NGAVVETSDKKILLLQRSNNVGEFPGHFV-FPGGHPE--PQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (298)
Q Consensus 129 V~~vl~~~dg~vLl~rRs~~~~~~~g~w~-~PGG~vE--~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (298)
..++++++++++||.|||...-.+|+.|. .-.+|+= ++|.... + +..+..||.|-|.-|+||
T Consensus 55 FSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~---d------------~lGVr~AAqRkL~~ELGI 119 (225)
T KOG0142|consen 55 FSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEEN---D------------ALGVRRAAQRKLKAELGI 119 (225)
T ss_pred eeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccC---c------------hHHHHHHHHHHHHHhhCC
Confidence 36789999999999999988777899986 2345543 3332110 0 123679999999999999
Q ss_pred CCCCCC--CCeeEEeecc--cccC---CceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchhcc
Q 022346 206 PSESLC--NPLFIGISRR--RLNV---RPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMASK 272 (298)
Q Consensus 206 ~~~~~~--~p~~l~~~~~--~~~~---~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~~ 272 (298)
+...+. +-.+++...+ ...+ .....|.+... ..-.+. ++++|+.++.||+.+||..+..+
T Consensus 120 p~e~v~pee~~~ltrihYkA~sdg~wGEhEiDYiL~~~-~~~~~n------PnpnEv~e~ryvs~eelkel~~~ 186 (225)
T KOG0142|consen 120 PLEEVPPEEFNFLTRIHYKAPSDGIWGEHEIDYILFLV-KDVTLN------PNPNEVSEIRYVSREELKELVAK 186 (225)
T ss_pred CccccCHHHcccceeeeeecCCCCCcccceeeEEEEEe-ccCCCC------CChhhhhHhheecHHHHHHHHhc
Confidence 988775 2234443322 1111 11111111111 111122 67789999999999999998754
No 98
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=97.24 E-value=0.0018 Score=53.40 Aligned_cols=119 Identities=22% Similarity=0.344 Sum_probs=72.2
Q ss_pred EEEEeCCCeEEEEEecCCCCC--CCCcEEc-CCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCC
Q 022346 131 AVVETSDKKILLLQRSNNVGE--FPGHFVF-PGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS 207 (298)
Q Consensus 131 ~vl~~~dg~vLl~rRs~~~~~--~~g~w~~-PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~ 207 (298)
++|.+.| +||+-.|-...+. ..|++.+ -|||+..++... + ...-|.-.+-||+.||+++.-
T Consensus 66 vvi~~ed-evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~--------s-------~~evLk~n~~REleEEv~vse 129 (203)
T COG4112 66 VVIMDED-EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGAT--------S-------REEVLKGNLERELEEEVDVSE 129 (203)
T ss_pred EEEecCC-EEEEEEeccCcchhhhccccccccccccccCCCcc--------c-------HHHHHccchHHHHHHHhCcCH
Confidence 3455444 8999998765433 4567776 699999887532 0 011133458899999999986
Q ss_pred CCCCCCeeEEeeccccc--CC--ceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhchhccC
Q 022346 208 ESLCNPLFIGISRRRLN--VR--PAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMASKM 273 (298)
Q Consensus 208 ~~~~~p~~l~~~~~~~~--~~--~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l~~~~ 273 (298)
...+...++|......+ ++ ...+|..... ..++. .-..+.-++.|+...+|.++-+.|
T Consensus 130 qd~q~~e~lGlINdd~neVgkVHiG~lf~~~~k--~ndve------vKEkd~~~~kwik~~ele~~y~~~ 191 (203)
T COG4112 130 QDLQELEFLGLINDDTNEVGKVHIGALFLGRGK--FNDVE------VKEKDLFEWKWIKLEELEKFYGVM 191 (203)
T ss_pred HHhhhheeeeeecCCCcccceEEEEEEEEeecc--cccee------eeecceeeeeeeeHHHHHHHhhhh
Confidence 66665568887644333 11 1223333332 22222 112356789999999999854443
No 99
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=96.92 E-value=0.00083 Score=58.08 Aligned_cols=38 Identities=29% Similarity=0.637 Sum_probs=32.2
Q ss_pred eEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhh
Q 022346 139 KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEI 203 (298)
Q Consensus 139 ~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEt 203 (298)
+++.+||+.. |.|.+|||.+||||- +-..++||+.||.
T Consensus 140 e~vavkr~d~-----~~WAiPGGmvdpGE~----------------------vs~tLkRef~eEa 177 (275)
T KOG4195|consen 140 EFVAVKRPDN-----GEWAIPGGMVDPGEK----------------------VSATLKREFGEEA 177 (275)
T ss_pred EEEEEecCCC-----CcccCCCCcCCchhh----------------------hhHHHHHHHHHHH
Confidence 4677888876 899999999999997 3488999999884
No 100
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=96.91 E-value=0.0026 Score=50.43 Aligned_cols=91 Identities=15% Similarity=0.203 Sum_probs=54.5
Q ss_pred CCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCCCCCCCeeEEeecccccCCceEEEE
Q 022346 153 PGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLCNPLFIGISRRRLNVRPAAFFF 232 (298)
Q Consensus 153 ~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~~~~p~~l~~~~~~~~~~~~~~~~ 232 (298)
-|.|.+|-|....+|.+ ..+|.||..||+||.++--. ..+|... ...++.+..|-
T Consensus 35 ~GAWSIPKGey~~gEdp----------------------~~AArREf~EE~Gi~vdGP~--~~lG~~k-Q~GGKvVta~~ 89 (161)
T COG4119 35 DGAWSIPKGEYTGGEDP----------------------WLAARREFSEEIGICVDGPR--IDLGSLK-QSGGKVVTAFG 89 (161)
T ss_pred CCcccccccccCCCcCH----------------------HHHHHHHhhhhhceeecCch--hhhhhhc-cCCCcEEEEEe
Confidence 47899999999999986 58999999999999884321 1334321 11233333333
Q ss_pred EEecCChhhHHh-h----hc--cC--CCCCcccceEEEcHHHHhc
Q 022346 233 IKCSLQSNEIQQ-L----YS--TA--QDGYESTQLFAVSMIELEN 268 (298)
Q Consensus 233 ~~~~~~~~ev~~-~----~~--~~--~d~~E~~~~~wv~~~el~~ 268 (298)
+...+.-..++. . +. ++ ..-.|+...-|+++.+...
T Consensus 90 veae~Dva~~rSntFe~eWPprSG~M~~FPEVDRagWF~l~eAr~ 134 (161)
T COG4119 90 VEAELDVADARSNTFELEWPPRSGKMRKFPEVDRAGWFPLAEART 134 (161)
T ss_pred eeeeeehhhhhcceeeeecCCCCCccccCcccccccceecHHHHh
Confidence 333222222211 0 10 01 2334889999999988764
No 101
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=95.57 E-value=0.038 Score=48.85 Aligned_cols=104 Identities=18% Similarity=0.227 Sum_probs=68.9
Q ss_pred eEEEEEecCCCCCCCCcEE-cCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCCCCCCCeeEE
Q 022346 139 KILLLQRSNNVGEFPGHFV-FPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLCNPLFIG 217 (298)
Q Consensus 139 ~vLl~rRs~~~~~~~g~w~-~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~~~~p~~l~ 217 (298)
.|.+.|||.....|||+|+ .-||.+--+.. +.++++.|..||.+|+........-.|
T Consensus 149 ~iWvprRS~TKqTWP~~lDN~vaGGl~~g~g----------------------I~eT~iKE~~EEAnl~~~~~~Nlv~~G 206 (306)
T KOG4313|consen 149 CIWVPRRSNTKQTWPGKLDNMVAGGLSVGFG----------------------IKETAIKEAAEEANLPSDLVKNLVSAG 206 (306)
T ss_pred EEEecccCCccccCcchhhhhhccccccCch----------------------HHHHHHHHHHHhcCCchhhHhcceecc
Confidence 6889999999888999998 68888888876 579999999999999873322111112
Q ss_pred eecc-----cccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 218 ISRR-----RLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 218 ~~~~-----~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
.+.. ...-.+...+.+...+..+-+. + ....|+..+..+++.+..+-
T Consensus 207 ~VSy~~~esr~~~~pe~qYVfDL~l~~d~iP----~-~nDGEV~~F~Lltl~~~v~~ 258 (306)
T KOG4313|consen 207 CVSYYKFESRQGLFPETQYVFDLELPLDFIP----Q-NNDGEVQAFELLTLKDCVER 258 (306)
T ss_pred eeEEEeeehhhccCccceEEEeccCchhhcC----C-CCCCceeeEeeecHHHHHHH
Confidence 1111 1112344445555555433222 2 34459999999999877653
No 102
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=93.92 E-value=0.018 Score=52.86 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=64.7
Q ss_pred cccCCcccEEEEEeCC-CeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhh
Q 022346 122 HTASPLGNGAVVETSD-KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVV 200 (298)
Q Consensus 122 ~~~~~~gV~~vl~~~d-g~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~ 200 (298)
|.+...+.++++++.. -++||++-... .-|.||-|++...|+. .+|++||+.
T Consensus 78 yk~~iPv~ga~ild~~~sr~llv~g~qa-----~sw~fprgK~~kdesd----------------------~~caiReV~ 130 (348)
T KOG2937|consen 78 YKARIPVRGAIILDEKRSRCLLVKGWQA-----SSWSFPRGKISKDESD----------------------SDCAIREVT 130 (348)
T ss_pred ccCCCCCchHhhhhhhhhhhheeeceec-----ccccccCccccccchh----------------------hhcchhccc
Confidence 4444444466666543 46777665433 3499999999999874 599999999
Q ss_pred hhhCCCCCCCCCCeeEEeecccccCCceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhc
Q 022346 201 EEIGVPSESLCNPLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELEN 268 (298)
Q Consensus 201 EEtGl~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~ 268 (298)
||||.+......+ .-+|- ....+.....| +. ...+.++. . .+.-..|.+.+.|..++++..
T Consensus 131 eetgfD~skql~~-~e~Ie-~nI~dq~~~~f-Ii-~gvs~d~~-f--~~~v~~eis~ihW~~l~~l~~ 191 (348)
T KOG2937|consen 131 EETGFDYSKQLQD-NEGIE-TNIRDQLVRLF-II-NGVSEDTN-F--NPRVRKEISKIHWHYLDHLVP 191 (348)
T ss_pred chhhcCHHHHhcc-ccCcc-cchhhceeeee-ee-ccceeeee-c--chhhhccccceeeeehhhhcc
Confidence 9999998764321 11221 11111111112 11 11111111 0 001234888999999999954
No 103
>PRK10702 endonuclease III; Provisional
Probab=91.39 E-value=0.0032 Score=55.21 Aligned_cols=83 Identities=10% Similarity=0.020 Sum_probs=53.5
Q ss_pred CCCCCCceEEEeccCCCCCCCCCcchhhHHHHHHHHHHhhCcCCcCCcceeeeceEeecCCCCCCcceEEEEecCccccc
Q 022346 17 HGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQKFRYGGHIMRGEGGSSVESHVCLHLGLTDYRT 96 (298)
Q Consensus 17 ~g~~~~~v~~~~s~~f~~~p~p~~~~~~~I~~~w~~~~~~~p~lfng~~f~~~~~~~~~~~~~~~~~~~~l~lg~T~yr~ 96 (298)
||||++++++++.-+|++ |.. .+|.+|.|+..+.--....-++ .....-....+.....+++.+.|.+|.+
T Consensus 115 pGVG~ktA~~ill~a~~~-~~~--~VDt~v~Rv~~r~g~~~~~~~~--~~~~~l~~~lp~~~~~~~~~~li~~Gr~---- 185 (211)
T PRK10702 115 PGVGRKTANVVLNTAFGW-PTI--AVDTHIFRVCNRTQFAPGKNVE--QVEEKLLKVVPAEFKVDCHHWLILHGRY---- 185 (211)
T ss_pred CcccHHHHHHHHHHHcCC-Ccc--cccchHHHHHHHhCCCCCCCHH--HHHHHHHHhCCchHHHHHHHHHHHHhHH----
Confidence 799999999999999999 643 4899999999887221111010 0000000111111112456678888988
Q ss_pred ccccCCCcchhhc
Q 022346 97 FVGTNLNPLWEKF 109 (298)
Q Consensus 97 ~v~T~~~p~~~~~ 109 (298)
+|+..+|.|..|
T Consensus 186 -~C~~~~P~C~~C 197 (211)
T PRK10702 186 -TCIARKPRCGSC 197 (211)
T ss_pred -HcCCCCCCCCCC
Confidence 999999998766
No 104
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=89.12 E-value=0.51 Score=40.37 Aligned_cols=53 Identities=25% Similarity=0.471 Sum_probs=34.2
Q ss_pred cccEEE-EEeCCC--eEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhh
Q 022346 127 LGNGAV-VETSDK--KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEI 203 (298)
Q Consensus 127 ~gV~~v-l~~~dg--~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEt 203 (298)
-.|.+| ++...+ +|||+|.... .|.+|||.+.++|.. .++.+|-+.+-+
T Consensus 44 rsVe~Vllvh~h~~PHvLLLq~~~~------~fkLPGg~l~~gE~e----------------------~~gLkrkL~~~l 95 (188)
T PF13869_consen 44 RSVEGVLLVHEHGHPHVLLLQIGNT------FFKLPGGRLRPGEDE----------------------IEGLKRKLTEKL 95 (188)
T ss_dssp EEEEEEEEEEETTEEEEEEEEETTT------EEE-SEEE--TT--H----------------------HHHHHHHHHHHH
T ss_pred eEEEEEEEEecCCCcEEEEEeccCc------cccCCccEeCCCCCh----------------------hHHHHHHHHHHc
Confidence 345444 444444 6999886433 799999999999985 499999999999
Q ss_pred CCCC
Q 022346 204 GVPS 207 (298)
Q Consensus 204 Gl~~ 207 (298)
|..-
T Consensus 96 ~~~~ 99 (188)
T PF13869_consen 96 SPED 99 (188)
T ss_dssp B-SS
T ss_pred CCCc
Confidence 9865
No 105
>TIGR01083 nth endonuclease III. This equivalog model identifes nth members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=84.69 E-value=0.014 Score=50.19 Aligned_cols=80 Identities=11% Similarity=0.016 Sum_probs=49.8
Q ss_pred CCCCCCceEEEeccCCCCCCCCCcchhhHHHHHHHHHHhhCcCCcCCcceeeeceEeecCCCCCCcceEEEEecCccccc
Q 022346 17 HGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQKFRYGGHIMRGEGGSSVESHVCLHLGLTDYRT 96 (298)
Q Consensus 17 ~g~~~~~v~~~~s~~f~~~p~p~~~~~~~I~~~w~~~~~~~p~lfng~~f~~~~~~~~~~~~~~~~~~~~l~lg~T~yr~ 96 (298)
+|||+.++++++.-+|++ |.+ .+|.+|.|+..+.--....-+ ...+..-....+.+....++.+.+.+|..
T Consensus 112 ~GIG~ktA~~ill~~~~~-~~~--~vD~~v~Ri~~r~g~~~~~~~--~~~~~~l~~~~p~~~~~~~h~~li~~G~~---- 182 (191)
T TIGR01083 112 PGVGRKTANVVLNVAFGI-PAI--AVDTHVFRVSNRLGLSKGKDP--DKVEEELLKLIPREFWTKLHHWLILHGRY---- 182 (191)
T ss_pred CCCcHHHHHHHHHHHcCC-Ccc--ccchhHHHHHHHcCCCCCCCH--HHHHHHHHHHCCchhHHHHHHHHHHHhHH----
Confidence 899999999999999998 653 489999999977622111111 11110011111112223456677778887
Q ss_pred ccccCCCcch
Q 022346 97 FVGTNLNPLW 106 (298)
Q Consensus 97 ~v~T~~~p~~ 106 (298)
+|+..+|.|
T Consensus 183 -~C~~~~P~C 191 (191)
T TIGR01083 183 -TCKARKPLC 191 (191)
T ss_pred -hcCCCCCCC
Confidence 888877765
No 106
>PF14443 DBC1: DBC1
Probab=83.36 E-value=1.4 Score=35.15 Aligned_cols=22 Identities=9% Similarity=0.151 Sum_probs=19.8
Q ss_pred HHHHHHHhhhhhhCCCCCCCCC
Q 022346 191 MFDSITREVVEEIGVPSESLCN 212 (298)
Q Consensus 191 l~~aa~REl~EEtGl~~~~~~~ 212 (298)
|..+|+|=+++-|||+++....
T Consensus 42 LI~TAiR~~K~~tgiDLS~Ct~ 63 (126)
T PF14443_consen 42 LIRTAIRTCKALTGIDLSNCTQ 63 (126)
T ss_pred HHHHHHHHHHHHhccchhhcCc
Confidence 7899999999999999988763
No 107
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=81.17 E-value=3.5 Score=34.56 Aligned_cols=40 Identities=35% Similarity=0.630 Sum_probs=32.0
Q ss_pred CeEEEEEecCCCCCCCCcEEcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCC
Q 022346 138 KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (298)
Q Consensus 138 g~vLl~rRs~~~~~~~g~w~~PGG~vE~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (298)
-+|||++-... .+-+|||.++|||+. .+..+|=+.|-+|-
T Consensus 84 PHvLLLQig~t------f~KLPGG~L~pGE~e----------------------~~Gl~r~l~~~Lgr 123 (221)
T KOG1689|consen 84 PHVLLLQIGNT------FFKLPGGRLRPGEDE----------------------ADGLKRLLTESLGR 123 (221)
T ss_pred CeEEEEeeCCE------EEecCCCccCCCcch----------------------hHHHHHHHHHHhcc
Confidence 47888876543 578999999999984 37888989999883
No 108
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=81.15 E-value=9.8 Score=34.90 Aligned_cols=134 Identities=13% Similarity=0.130 Sum_probs=69.7
Q ss_pred CcccEEEEEeC-CCeEEEEEecCCCCCCCCcEEc--CCcc--cC---CCCCCCCCCCCCCCchhhhhhhhh--hhHHHHH
Q 022346 126 PLGNGAVVETS-DKKILLLQRSNNVGEFPGHFVF--PGGH--PE---PQDAGITSHPCGSTDSEFINHKVS--QEMFDSI 195 (298)
Q Consensus 126 ~~gV~~vl~~~-dg~vLl~rRs~~~~~~~g~w~~--PGG~--vE---~~E~~~~~~~~~~~~~~~~~~~~~--~~l~~aa 195 (298)
+-.|.+|+++. ..+++|+|+-+. +.+.|.-.+ ||-. +| +.|+++.-. ...+...+.|- -...+-|
T Consensus 229 hdSvt~iL~n~srk~LVlvqqfRp-aVy~G~~~~~~~g~~~~vDe~~~~e~~Paig----vTlELcag~Vd~p~s~~e~a 303 (405)
T KOG4432|consen 229 HDSVTCILVNMSRKELVLVQQFRP-AVYVGKNRFLKEGIGKPVDEIDFSESDPAIG----VTLELCAGRVDDPFSDPEKA 303 (405)
T ss_pred CCceEEEEEeccchheehhhhcCc-ceeecceeecccCCCCcccccccccCCccce----eeeeeecccCCCCcccHHHH
Confidence 44567777754 456777776655 366776665 4421 11 333322100 00000001111 1245789
Q ss_pred HHhhhhhhCCCCCCCCCCeeEEeecc--cccCCceEEEEEEecCChhhHHhhhcc--C-CCCCcccceEEEcHHHHhchh
Q 022346 196 TREVVEEIGVPSESLCNPLFIGISRR--RLNVRPAAFFFIKCSLQSNEIQQLYST--A-QDGYESTQLFAVSMIELENMA 270 (298)
Q Consensus 196 ~REl~EEtGl~~~~~~~p~~l~~~~~--~~~~~~~~~~~~~~~~~~~ev~~~~~~--~-~d~~E~~~~~wv~~~el~~l~ 270 (298)
.||..||.|+++..-+. .+...... ..++.....||+.+ +... +-.. + .+.+|..++.-+++++++.|.
T Consensus 304 ~~e~veecGYdlp~~~~-k~va~y~sGVG~SG~~QTmfy~eV--TdA~---rsgpGgg~~ee~E~IEvv~lsle~a~~~~ 377 (405)
T KOG4432|consen 304 ARESVEECGYDLPEDSF-KLVAKYISGVGQSGDTQTMFYVEV--TDAR---RSGPGGGEKEEDEDIEVVRLSLEDAPSLY 377 (405)
T ss_pred HHHHHHHhCCCCCHHHH-hhhheeecccCCcCCeeEEEEEEe--ehhh---ccCCCCCcccccceeeEEEechhhhhHHH
Confidence 99999999998865320 02222211 22344445566554 2211 0011 1 456688899999999999887
No 109
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=70.21 E-value=23 Score=31.74 Aligned_cols=99 Identities=18% Similarity=0.223 Sum_probs=55.9
Q ss_pred eEEEEEecCCCCCCCCcEEcCCccc-CCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHHhhhhhhCCCCCCCC-CCeeE
Q 022346 139 KILLLQRSNNVGEFPGHFVFPGGHP-EPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLC-NPLFI 216 (298)
Q Consensus 139 ~vLl~rRs~~~~~~~g~w~~PGG~v-E~~E~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~~~-~p~~l 216 (298)
-+||++|.-. ..+.|.||-+.. +++++ ++.+|.|+|..-.|=.....- .-..+
T Consensus 140 LyLLV~~k~g---~~s~w~fP~~~~s~~~~~----------------------lr~~ae~~Lk~~~ge~~~t~fvgnaP~ 194 (263)
T KOG4548|consen 140 LYLLVKRKFG---KSSVWIFPNRQFSSSEKT----------------------LRGHAERDLKVLSGENKSTWFVGNAPF 194 (263)
T ss_pred EEEEEeeccC---ccceeeCCCcccCCccch----------------------HHHHHHHHHHHHhcchhhhheeccCcc
Confidence 4666664422 246899999999 77776 789999999988876554431 00112
Q ss_pred Eeeccccc-----CC--ceEEEEEEecCChhhHHhhhccCCCCCcccceEEEcHHHHhch
Q 022346 217 GISRRRLN-----VR--PAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENM 269 (298)
Q Consensus 217 ~~~~~~~~-----~~--~~~~~~~~~~~~~~ev~~~~~~~~d~~E~~~~~wv~~~el~~l 269 (298)
|.....+. .. -...|++.+.+-++.... .+ -..++.||+-++|.+.
T Consensus 195 g~~~~q~pr~~~~e~~~~sk~ff~k~~lv~~~~~k-----n~--n~edfvWvTkdel~e~ 247 (263)
T KOG4548|consen 195 GHTPLQSPREMTTEEPVSSKVFFFKASLVANSNQK-----NQ--NKEDFVWVTKDELGEK 247 (263)
T ss_pred ccccccCcccccccccccceeEEeeeeeccccchh-----cc--cccceEEechHHHhhh
Confidence 21100010 01 122355555555443221 11 2235899999999875
No 110
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=68.27 E-value=8.8 Score=35.21 Aligned_cols=21 Identities=24% Similarity=0.147 Sum_probs=17.8
Q ss_pred HHHHHHHhhhhhhCCCCCCCC
Q 022346 191 MFDSITREVVEEIGVPSESLC 211 (298)
Q Consensus 191 l~~aa~REl~EEtGl~~~~~~ 211 (298)
+.+-|..|+.||.|+.+..-.
T Consensus 94 ~~eia~eev~eecgy~v~~d~ 114 (405)
T KOG4432|consen 94 PREIASEEVAEECGYRVDPDD 114 (405)
T ss_pred HHHHhHHHHHHHhCCcCChhH
Confidence 568889999999999887655
No 111
>PRK13913 3-methyladenine DNA glycosylase; Provisional
Probab=60.81 E-value=1.5 Score=38.57 Aligned_cols=35 Identities=3% Similarity=-0.028 Sum_probs=30.9
Q ss_pred CCCCCCCceEEEeccCCCCCCCCCcchhhHHHHHHHHH
Q 022346 16 PHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSR 53 (298)
Q Consensus 16 ~~g~~~~~v~~~~s~~f~~~p~p~~~~~~~I~~~w~~~ 53 (298)
=+|||++|+++++.-+|++ |... +|..+.|+..|+
T Consensus 126 l~GIG~kTAd~iLlya~~r-p~fv--VDty~~Rv~~Rl 160 (218)
T PRK13913 126 QKGIGKESADAILCYVCAK-EVMV--VDKYSYLFLKKL 160 (218)
T ss_pred CCCccHHHHHHHHHHHcCC-Cccc--cchhHHHHHHHc
Confidence 3799999999999999999 7544 899999999885
No 112
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=33.62 E-value=22 Score=22.41 Aligned_cols=11 Identities=27% Similarity=0.640 Sum_probs=9.5
Q ss_pred HHHHHhhhhhh
Q 022346 193 DSITREVVEEI 203 (298)
Q Consensus 193 ~aa~REl~EEt 203 (298)
..++||+-||+
T Consensus 26 ~~alkELIeEL 36 (43)
T PF03487_consen 26 STALKELIEEL 36 (43)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 67999999985
No 113
>smart00478 ENDO3c endonuclease III. includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Probab=29.87 E-value=12 Score=30.33 Aligned_cols=35 Identities=11% Similarity=0.180 Sum_probs=30.0
Q ss_pred CCCCCCCceEEEeccCCCCCCCCCcchhhHHHHHHHHH
Q 022346 16 PHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSR 53 (298)
Q Consensus 16 ~~g~~~~~v~~~~s~~f~~~p~p~~~~~~~I~~~w~~~ 53 (298)
=+|||+.++++++.-+|++ +.|. +|-+|.++..+.
T Consensus 77 l~GIG~~tA~~~l~~~~~~-~~~~--~D~~v~r~~~rl 111 (149)
T smart00478 77 LPGVGRKTANAVLSFALGK-PFIP--VDTHVLRIAKRL 111 (149)
T ss_pred CCCCcHHHHHHHHHHHCCC-CCCc--cchHHHHHHHHh
Confidence 3899999999999999998 6554 889998888775
No 114
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=27.47 E-value=18 Score=31.66 Aligned_cols=74 Identities=12% Similarity=0.156 Sum_probs=48.4
Q ss_pred CCCCCCceEEEeccCCCCCCCCCcchhhHHHHHHHHHHhh---CcC-----C--cCCcceeeeceEeecCCCCCCcceEE
Q 022346 17 HGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQI---NKS-----L--FNGQKFRYGGHIMRGEGGSSVESHVC 86 (298)
Q Consensus 17 ~g~~~~~v~~~~s~~f~~~p~p~~~~~~~I~~~w~~~~~~---~p~-----l--fng~~f~~~~~~~~~~~~~~~~~~~~ 86 (298)
||+|+-|+.|+++-+|+. | -+ ++|-.|.|+=.|.--. +|. | +-.+.+|.. .+...
T Consensus 115 PGVGrKTAnvVL~~a~g~-p-~i-~VDTHV~Rvs~R~gl~~~~~p~~ve~~L~~~iP~~~~~~------------~h~~l 179 (211)
T COG0177 115 PGVGRKTANVVLSFAFGI-P-AI-AVDTHVHRVSNRLGLVPGKTPEEVEEALMKLIPKELWTD------------LHHWL 179 (211)
T ss_pred CCcchHHHHHHHHhhcCC-C-cc-cccchHHHHHHHhCCCCCCCHHHHHHHHHHHCCHHHHHH------------HHHHH
Confidence 899999999999999999 6 23 5899998876654221 110 0 001112221 23334
Q ss_pred EEecCcccccccccCCCcchhhcc
Q 022346 87 LHLGLTDYRTFVGTNLNPLWEKFL 110 (298)
Q Consensus 87 l~lg~T~yr~~v~T~~~p~~~~~~ 110 (298)
+..|.+ +|+.++|.|..|.
T Consensus 180 I~~GR~-----iC~ar~P~C~~C~ 198 (211)
T COG0177 180 ILHGRY-----ICKARKPRCEECP 198 (211)
T ss_pred HHhhhh-----hccCCCCCcCccc
Confidence 556777 9999999998763
No 115
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=25.21 E-value=32 Score=28.64 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=20.2
Q ss_pred cccccceEeeeCCCCCCCCceEEEe
Q 022346 4 EADSAYKLLLSCPHGFSPSEVSVVF 28 (298)
Q Consensus 4 ~~~~~~~~~~~~~~g~~~~~v~~~~ 28 (298)
+-+..-.++++|..||+++++.+-.
T Consensus 89 ~wp~~apllIHC~aGISRStA~A~i 113 (172)
T COG5350 89 EWPRFAPLLIHCYAGISRSTAAALI 113 (172)
T ss_pred cCccccceeeeeccccccchHHHHH
Confidence 4566778999999999999976544
No 116
>TIGR00588 ogg 8-oxoguanine DNA-glycosylase (ogg). All proteins in this family for which functions are known are 8-oxo-guanaine DNA glycosylases that function in base excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is distantly realted to the Nth-MutY superfamily.
Probab=24.02 E-value=17 Score=33.65 Aligned_cols=37 Identities=14% Similarity=0.226 Sum_probs=31.7
Q ss_pred CCCCCCceEEEeccCCCCCCCCCcchhhHHHHHHHHHHh
Q 022346 17 HGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQ 55 (298)
Q Consensus 17 ~g~~~~~v~~~~s~~f~~~p~p~~~~~~~I~~~w~~~~~ 55 (298)
+|||+.++++++.-+|++ |...+ +|-.|.++.++...
T Consensus 226 ~GIG~~tAd~vll~~l~~-~d~~P-vD~~v~r~~~r~y~ 262 (310)
T TIGR00588 226 PGVGPKVADCICLMGLDK-PQAVP-VDVHVWRIANRDYP 262 (310)
T ss_pred CCccHHHHHHHHHHhCCC-CCcee-ecHHHHHHHHHHhc
Confidence 899999999999999999 65454 58999999988754
No 117
>cd09232 Snurportin-1_C C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1. Snurportin-1 (SPN1 or SNUPN) is a nuclear import adaptor for m3G-capped spliceosomal U small nucleoproteins (snRNPs), which are assembled in the cytoplasm. After capping and assembly, the U snRNPs are transported into the nucleus by SPN1 and importin beta; SPN1 is then returned to the cytoplasm by exportin 1 (CRM1), which also transports the non-capped U snRNPs. The U snRNPs are essential elements of the spliceosome, which catalyzes the excision of introns and the ligation of exons to form a mature mRNA. SPN1 contains two domains, an N-terminal importin beta-binding (IBB) domain and a C-terminal m3G cap-binding domain.
Probab=20.58 E-value=94 Score=26.59 Aligned_cols=40 Identities=20% Similarity=0.314 Sum_probs=29.1
Q ss_pred ccCCcccEEEEEeCCCeEEEEEecCCCCCCCCcEEcCCccc
Q 022346 123 TASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHP 163 (298)
Q Consensus 123 ~~~~~gV~~vl~~~dg~vLl~rRs~~~~~~~g~w~~PGG~v 163 (298)
...|.|.-.+++.++|++.+.-|.... ...-.-.||||+-
T Consensus 26 ~~~P~G~R~lvv~~~g~t~~~~r~g~~-~~~f~s~lP~g~~ 65 (186)
T cd09232 26 VPCPVGKRCLVVASKGKTVARSKNGRT-LHRFSSALPGGSR 65 (186)
T ss_pred EECcCceEEEEEEeCCEEEEEeCCCCE-EEecccCCCCCCc
Confidence 446899877777778999888887553 3444567999974
Done!