Query 022348
Match_columns 298
No_of_seqs 193 out of 1476
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 02:51:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02779 haloacid dehalogenase 100.0 2.4E-32 5.1E-37 232.5 23.8 218 63-290 36-255 (286)
2 PLN03243 haloacid dehalogenase 100.0 8.8E-31 1.9E-35 219.4 23.5 196 65-291 22-218 (260)
3 PLN02770 haloacid dehalogenase 100.0 1.3E-30 2.8E-35 218.2 22.9 202 62-292 17-218 (248)
4 PRK13288 pyrophosphatase PpaX; 100.0 2.7E-30 5.9E-35 212.0 22.0 192 66-293 2-194 (214)
5 COG0546 Gph Predicted phosphat 100.0 7E-30 1.5E-34 209.9 23.4 200 65-294 2-202 (220)
6 TIGR03351 PhnX-like phosphonat 100.0 6E-30 1.3E-34 210.9 23.0 196 67-293 1-203 (220)
7 PRK13226 phosphoglycolate phos 100.0 3.7E-30 8E-35 213.0 21.7 188 66-285 11-199 (229)
8 PLN02575 haloacid dehalogenase 100.0 7.4E-30 1.6E-34 220.9 24.3 194 66-290 130-324 (381)
9 COG0637 Predicted phosphatase/ 100.0 2.9E-30 6.4E-35 211.7 18.6 190 66-286 1-190 (221)
10 PRK10826 2-deoxyglucose-6-phos 100.0 1.3E-29 2.8E-34 209.1 21.6 192 66-288 6-198 (222)
11 TIGR01422 phosphonatase phosph 100.0 2.8E-29 6E-34 211.2 22.7 190 67-285 2-205 (253)
12 TIGR01449 PGP_bact 2-phosphogl 100.0 3.4E-29 7.5E-34 205.4 21.5 193 70-291 1-195 (213)
13 PRK11587 putative phosphatase; 100.0 2.9E-29 6.2E-34 206.4 20.1 186 65-287 1-187 (218)
14 PRK13478 phosphonoacetaldehyde 100.0 1.1E-28 2.4E-33 209.0 23.2 191 65-284 2-205 (267)
15 PRK13223 phosphoglycolate phos 100.0 1.3E-28 2.7E-33 208.4 22.7 201 65-292 11-212 (272)
16 TIGR01454 AHBA_synth_RP 3-amin 100.0 1.9E-28 4.1E-33 199.7 21.5 185 70-293 1-187 (205)
17 TIGR02009 PGMB-YQAB-SF beta-ph 100.0 2E-28 4.4E-33 196.4 20.5 184 67-281 1-185 (185)
18 TIGR01990 bPGM beta-phosphoglu 100.0 2.4E-28 5.2E-33 196.0 20.3 183 69-281 1-184 (185)
19 TIGR01428 HAD_type_II 2-haloal 100.0 1.6E-28 3.4E-33 199.1 17.1 106 178-286 91-196 (198)
20 PRK10725 fructose-1-P/6-phosph 100.0 6.3E-28 1.4E-32 194.0 20.5 183 65-282 3-186 (188)
21 PLN02940 riboflavin kinase 100.0 4.5E-28 9.7E-33 213.8 20.6 187 66-285 10-197 (382)
22 TIGR02252 DREG-2 REG-2-like, H 100.0 5.7E-28 1.2E-32 196.6 19.4 187 68-280 1-203 (203)
23 PRK13225 phosphoglycolate phos 100.0 2E-27 4.3E-32 200.4 21.1 191 65-293 60-251 (273)
24 PRK13222 phosphoglycolate phos 100.0 4.1E-27 8.9E-32 194.9 22.7 191 65-284 4-195 (226)
25 TIGR02253 CTE7 HAD superfamily 100.0 1.5E-27 3.3E-32 196.7 20.0 107 177-286 92-199 (221)
26 PRK10563 6-phosphogluconate ph 100.0 2.2E-27 4.8E-32 195.7 19.8 182 66-282 3-186 (221)
27 PRK14988 GMP/IMP nucleotidase; 100.0 3.1E-27 6.7E-32 194.5 19.1 108 176-286 90-198 (224)
28 PLN02919 haloacid dehalogenase 100.0 1.1E-26 2.3E-31 227.3 26.2 204 62-295 70-275 (1057)
29 PF13419 HAD_2: Haloacid dehal 100.0 1.4E-26 3E-31 183.7 19.7 174 70-281 1-176 (176)
30 PRK09449 dUMP phosphatase; Pro 99.9 1.2E-26 2.6E-31 191.8 18.2 101 178-282 94-196 (224)
31 TIGR02247 HAD-1A3-hyp Epoxide 99.9 3.6E-26 7.9E-31 187.1 19.0 106 177-285 92-199 (211)
32 TIGR02254 YjjG/YfnB HAD superf 99.9 4.7E-26 1E-30 188.2 19.7 182 67-283 1-199 (224)
33 PRK10748 flavin mononucleotide 99.9 1.1E-25 2.3E-30 187.3 19.0 191 65-285 8-211 (238)
34 PRK06698 bifunctional 5'-methy 99.9 1.5E-25 3.3E-30 203.3 20.8 190 65-284 239-429 (459)
35 TIGR01548 HAD-SF-IA-hyp1 haloa 99.9 3.9E-25 8.5E-30 179.0 18.5 180 68-274 1-197 (197)
36 TIGR01993 Pyr-5-nucltdase pyri 99.9 2.1E-25 4.5E-30 178.7 16.3 99 177-281 82-184 (184)
37 PRK09456 ?-D-glucose-1-phospha 99.9 2.8E-24 6E-29 174.3 20.6 109 179-289 84-192 (199)
38 TIGR01509 HAD-SF-IA-v3 haloaci 99.9 2E-24 4.4E-29 172.8 19.5 100 178-281 84-183 (183)
39 COG1011 Predicted hydrolase (H 99.9 4.4E-25 9.6E-30 183.0 14.4 106 177-286 97-203 (229)
40 KOG3085 Predicted hydrolase (H 99.9 9.7E-26 2.1E-30 181.8 9.8 207 64-287 4-218 (237)
41 PLN02811 hydrolase 99.9 6.9E-24 1.5E-28 174.6 20.6 179 74-283 1-185 (220)
42 TIGR01549 HAD-SF-IA-v1 haloaci 99.9 3.3E-24 7.1E-29 166.8 17.1 154 69-275 1-154 (154)
43 KOG2914 Predicted haloacid-hal 99.9 1.7E-23 3.6E-28 168.4 19.9 193 64-289 7-203 (222)
44 TIGR01493 HAD-SF-IA-v2 Haloaci 99.9 1.3E-23 2.7E-28 167.0 10.9 166 69-274 1-175 (175)
45 PHA02597 30.2 hypothetical pro 99.9 3.5E-22 7.6E-27 161.8 16.6 102 177-285 72-177 (197)
46 TIGR00338 serB phosphoserine p 99.9 1.1E-21 2.3E-26 161.7 18.0 100 178-280 84-193 (219)
47 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.9 1.6E-21 3.5E-26 158.4 17.6 106 178-286 79-194 (201)
48 PLN02954 phosphoserine phospha 99.9 5.5E-21 1.2E-25 157.9 18.9 177 64-286 9-200 (224)
49 TIGR01656 Histidinol-ppas hist 99.9 1.3E-21 2.9E-26 150.5 11.1 105 179-284 27-147 (147)
50 TIGR01691 enolase-ppase 2,3-di 99.9 1.2E-20 2.7E-25 153.5 17.0 105 177-285 93-199 (220)
51 PRK11133 serB phosphoserine ph 99.9 1.3E-20 2.7E-25 161.9 17.3 102 178-280 180-289 (322)
52 PRK08942 D,D-heptose 1,7-bisph 99.9 1.3E-20 2.7E-25 150.4 14.2 102 179-285 29-150 (181)
53 TIGR01662 HAD-SF-IIIA HAD-supe 99.8 3.3E-20 7.1E-25 140.4 12.3 97 179-282 25-131 (132)
54 TIGR01685 MDP-1 magnesium-depe 99.8 1.2E-20 2.5E-25 147.4 9.7 111 177-290 43-165 (174)
55 TIGR01672 AphA HAD superfamily 99.8 3.1E-19 6.6E-24 146.4 17.6 100 178-287 113-217 (237)
56 TIGR00213 GmhB_yaeD D,D-heptos 99.8 8.5E-20 1.8E-24 144.9 13.1 102 178-284 25-153 (176)
57 PRK06769 hypothetical protein; 99.8 1E-19 2.3E-24 143.6 13.0 103 179-284 28-139 (173)
58 TIGR01261 hisB_Nterm histidino 99.8 7.6E-20 1.6E-24 142.0 11.4 103 178-285 28-150 (161)
59 KOG3109 Haloacid dehalogenase- 99.8 4.9E-19 1.1E-23 137.9 15.0 104 177-285 98-208 (244)
60 PRK09552 mtnX 2-hydroxy-3-keto 99.8 5.3E-19 1.1E-23 145.4 15.3 102 178-279 73-184 (219)
61 TIGR01664 DNA-3'-Pase DNA 3'-p 99.8 7.5E-19 1.6E-23 137.4 10.9 96 180-280 43-160 (166)
62 PRK13582 thrH phosphoserine ph 99.8 1.8E-17 3.9E-22 135.0 16.4 99 178-280 67-169 (205)
63 cd01427 HAD_like Haloacid deha 99.8 5.4E-18 1.2E-22 128.6 11.3 101 178-281 23-139 (139)
64 COG0560 SerB Phosphoserine pho 99.8 5.2E-17 1.1E-21 131.7 16.9 105 178-285 76-190 (212)
65 TIGR02137 HSK-PSP phosphoserin 99.8 7.3E-17 1.6E-21 130.3 16.7 106 178-291 67-180 (203)
66 TIGR01489 DKMTPPase-SF 2,3-dik 99.7 8.8E-17 1.9E-21 129.1 15.9 95 178-278 71-185 (188)
67 TIGR01668 YqeG_hyp_ppase HAD s 99.7 4.5E-17 9.7E-22 128.2 12.8 100 179-290 43-145 (170)
68 TIGR01452 PGP_euk phosphoglyco 99.7 8.3E-18 1.8E-22 143.2 8.5 109 180-292 144-258 (279)
69 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.7 3.9E-16 8.5E-21 126.8 17.1 104 179-283 87-199 (202)
70 TIGR03333 salvage_mtnX 2-hydro 99.7 1.7E-16 3.8E-21 129.9 14.2 99 178-277 69-178 (214)
71 TIGR01488 HAD-SF-IB Haloacid D 99.7 3.8E-16 8.2E-21 124.2 14.6 95 177-274 71-177 (177)
72 PRK05446 imidazole glycerol-ph 99.7 3.1E-16 6.8E-21 135.6 14.5 101 178-283 29-149 (354)
73 PRK11009 aphA acid phosphatase 99.7 4.1E-16 8.9E-21 127.8 14.5 97 178-286 113-216 (237)
74 TIGR01681 HAD-SF-IIIC HAD-supe 99.7 1E-16 2.2E-21 120.1 9.4 88 179-273 29-126 (128)
75 PF00702 Hydrolase: haloacid d 99.7 4.2E-16 9E-21 127.8 13.7 89 179-275 127-215 (215)
76 TIGR02726 phenyl_P_delta pheny 99.7 3.4E-17 7.3E-22 127.7 6.5 92 187-290 42-133 (169)
77 TIGR01670 YrbI-phosphatas 3-de 99.7 2.8E-17 6.1E-22 127.3 5.6 86 187-284 36-121 (154)
78 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.7 3.2E-16 6.9E-21 131.6 9.5 205 67-284 1-226 (257)
79 PHA02530 pseT polynucleotide k 99.7 6.2E-16 1.3E-20 133.4 11.6 100 179-281 187-295 (300)
80 PRK11590 hypothetical protein; 99.7 1.5E-14 3.2E-19 118.2 18.1 188 66-284 5-205 (211)
81 COG2179 Predicted hydrolase of 99.6 1.5E-15 3.3E-20 113.9 10.0 91 180-282 47-138 (175)
82 PRK10530 pyridoxal phosphate ( 99.6 7.5E-15 1.6E-19 124.9 11.9 207 66-283 2-243 (272)
83 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.6 5.1E-15 1.1E-19 123.8 9.1 110 179-292 121-234 (249)
84 KOG1615 Phosphoserine phosphat 99.6 9.2E-14 2E-18 106.6 14.7 165 64-273 13-191 (227)
85 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.6 8E-15 1.7E-19 122.4 9.8 98 181-282 140-241 (242)
86 PRK09484 3-deoxy-D-manno-octul 99.6 7.3E-15 1.6E-19 117.1 8.5 82 187-280 56-137 (183)
87 smart00577 CPDc catalytic doma 99.5 9.5E-15 2.1E-19 112.4 6.8 95 178-279 44-139 (148)
88 TIGR01686 FkbH FkbH-like domai 99.5 4.7E-14 1E-18 122.4 12.0 91 179-277 31-125 (320)
89 COG0647 NagD Predicted sugar p 99.5 8E-14 1.7E-18 115.8 12.5 59 235-293 187-247 (269)
90 PLN02645 phosphoglycolate phos 99.5 3.1E-14 6.6E-19 123.0 10.0 104 186-292 177-286 (311)
91 PRK10444 UMP phosphatase; Prov 99.5 3.8E-14 8.3E-19 118.1 10.1 63 230-292 166-230 (248)
92 PRK08238 hypothetical protein; 99.5 8.4E-13 1.8E-17 119.4 18.2 100 177-285 70-169 (479)
93 TIGR01544 HAD-SF-IE haloacid d 99.5 7.7E-13 1.7E-17 110.3 15.5 102 170-274 112-230 (277)
94 TIGR01482 SPP-subfamily Sucros 99.5 5.7E-14 1.2E-18 116.1 7.5 91 198-290 110-200 (225)
95 PRK01158 phosphoglycolate phos 99.5 2.9E-14 6.2E-19 118.3 5.8 87 198-289 118-207 (230)
96 TIGR01663 PNK-3'Pase polynucle 99.5 1.8E-13 3.9E-18 124.2 11.0 92 180-276 198-305 (526)
97 COG0241 HisB Histidinol phosph 99.5 1.1E-12 2.4E-17 102.1 13.0 98 179-281 31-148 (181)
98 PF12689 Acid_PPase: Acid Phos 99.4 7.1E-13 1.5E-17 102.7 10.1 108 177-292 43-161 (169)
99 PTZ00445 p36-lilke protein; Pr 99.4 7.5E-13 1.6E-17 104.2 8.9 103 179-284 75-207 (219)
100 TIGR02244 HAD-IG-Ncltidse HAD 99.4 3.5E-11 7.7E-16 103.5 17.4 105 177-283 182-324 (343)
101 PRK00192 mannosyl-3-phosphogly 99.4 5E-12 1.1E-16 107.5 11.2 50 239-288 190-240 (273)
102 TIGR01487 SPP-like sucrose-pho 99.4 8.4E-13 1.8E-17 108.3 5.9 91 198-292 110-200 (215)
103 PRK10513 sugar phosphate phosp 99.4 1.7E-11 3.8E-16 104.1 13.5 59 234-292 191-249 (270)
104 PF06888 Put_Phosphatase: Puta 99.3 3.8E-11 8.1E-16 98.1 14.4 100 177-279 69-193 (234)
105 COG4229 Predicted enolase-phos 99.3 1.4E-10 3E-15 88.3 15.0 103 178-284 102-206 (229)
106 COG0561 Cof Predicted hydrolas 99.3 7.1E-12 1.5E-16 106.1 8.3 59 234-292 184-242 (264)
107 PLN02887 hydrolase family prot 99.3 7.4E-11 1.6E-15 108.8 15.5 59 234-292 502-560 (580)
108 TIGR01460 HAD-SF-IIA Haloacid 99.3 6.6E-12 1.4E-16 104.3 7.3 48 235-282 185-234 (236)
109 KOG2882 p-Nitrophenyl phosphat 99.3 6.8E-11 1.5E-15 97.6 12.3 60 234-293 220-281 (306)
110 PRK15126 thiamin pyrimidine py 99.3 2.2E-11 4.8E-16 103.6 9.9 58 234-291 183-240 (272)
111 TIGR01545 YfhB_g-proteo haloac 99.3 3.5E-10 7.6E-15 92.0 16.3 101 179-284 94-204 (210)
112 PRK10976 putative hydrolase; P 99.3 1.7E-11 3.7E-16 103.9 8.6 58 234-291 185-242 (266)
113 PF13242 Hydrolase_like: HAD-h 99.2 2.4E-11 5.1E-16 82.1 6.4 56 236-291 2-59 (75)
114 TIGR02463 MPGP_rel mannosyl-3- 99.2 3.3E-10 7.2E-15 93.3 14.6 44 237-280 177-220 (221)
115 TIGR01533 lipo_e_P4 5'-nucleot 99.2 2.9E-10 6.3E-15 94.9 13.9 87 176-271 115-204 (266)
116 PF12710 HAD: haloacid dehalog 99.2 1.2E-10 2.5E-15 93.7 10.8 89 182-272 92-192 (192)
117 COG4359 Uncharacterized conser 99.2 3.3E-10 7.2E-15 86.4 12.0 94 177-276 71-180 (220)
118 PRK03669 mannosyl-3-phosphogly 99.2 3.6E-10 7.8E-15 96.0 13.2 51 234-284 182-235 (271)
119 COG1778 Low specificity phosph 99.2 1.7E-11 3.6E-16 91.2 4.2 86 187-284 43-128 (170)
120 TIGR01684 viral_ppase viral ph 99.2 8.9E-11 1.9E-15 97.7 8.9 58 182-242 149-206 (301)
121 PF08645 PNK3P: Polynucleotide 99.2 1.1E-10 2.4E-15 90.5 8.9 95 180-279 30-153 (159)
122 PF09419 PGP_phosphatase: Mito 99.2 3.3E-10 7.1E-15 87.5 10.9 93 180-285 60-167 (168)
123 TIGR01485 SPP_plant-cyano sucr 99.2 5.6E-10 1.2E-14 93.6 13.3 50 232-281 160-209 (249)
124 TIGR02471 sucr_syn_bact_C sucr 99.2 2.7E-10 5.9E-15 94.8 10.4 58 233-290 153-210 (236)
125 TIGR01456 CECR5 HAD-superfamil 99.1 1.3E-09 2.8E-14 94.6 14.2 50 235-284 230-293 (321)
126 TIGR00099 Cof-subfamily Cof su 99.1 1.9E-09 4E-14 90.9 14.2 50 234-283 183-232 (256)
127 TIGR02251 HIF-SF_euk Dullard-l 99.0 3E-10 6.6E-15 88.5 4.1 107 178-291 41-148 (162)
128 KOG3120 Predicted haloacid deh 99.0 1.2E-08 2.6E-13 80.4 12.7 103 177-282 82-210 (256)
129 TIGR01486 HAD-SF-IIB-MPGP mann 99.0 4.7E-09 1E-13 88.4 11.2 59 235-293 172-232 (256)
130 PF08282 Hydrolase_3: haloacid 99.0 5.9E-10 1.3E-14 93.3 5.6 53 236-288 183-235 (254)
131 PHA03398 viral phosphatase sup 99.0 4.3E-09 9.2E-14 87.8 9.8 81 182-265 151-262 (303)
132 TIGR01525 ATPase-IB_hvy heavy 98.9 7.1E-09 1.5E-13 96.8 10.0 90 178-281 383-473 (556)
133 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.9 7.1E-09 1.5E-13 86.6 8.8 91 178-276 23-116 (242)
134 TIGR02461 osmo_MPG_phos mannos 98.9 5.8E-08 1.3E-12 80.0 13.3 43 238-280 180-224 (225)
135 KOG3040 Predicted sugar phosph 98.8 2.6E-08 5.6E-13 77.8 8.8 48 236-283 179-227 (262)
136 PRK14502 bifunctional mannosyl 98.8 6.8E-08 1.5E-12 89.5 12.9 44 237-280 611-656 (694)
137 TIGR01512 ATPase-IB2_Cd heavy 98.8 1.5E-08 3.3E-13 94.1 8.9 89 179-281 362-451 (536)
138 PLN02382 probable sucrose-phos 98.8 2.8E-07 6.2E-12 82.5 14.7 55 235-289 171-229 (413)
139 PRK12702 mannosyl-3-phosphogly 98.8 3.5E-07 7.6E-12 76.6 14.0 48 238-286 207-256 (302)
140 TIGR01511 ATPase-IB1_Cu copper 98.7 4.2E-08 9.2E-13 91.5 9.5 89 179-282 405-493 (562)
141 TIGR01484 HAD-SF-IIB HAD-super 98.7 6.2E-08 1.4E-12 78.7 8.7 46 234-279 158-203 (204)
142 PRK10671 copA copper exporting 98.7 7.2E-08 1.6E-12 94.2 10.2 92 179-284 650-741 (834)
143 PF06941 NT5C: 5' nucleotidase 98.7 1.5E-07 3.2E-12 75.7 9.9 92 177-289 71-169 (191)
144 TIGR01675 plant-AP plant acid 98.7 7.5E-07 1.6E-11 72.6 13.6 102 175-284 116-224 (229)
145 PF13344 Hydrolase_6: Haloacid 98.7 3E-07 6.4E-12 65.6 9.5 84 179-276 14-100 (101)
146 TIGR01680 Veg_Stor_Prot vegeta 98.6 1E-06 2.2E-11 73.0 12.7 107 175-284 141-251 (275)
147 TIGR01522 ATPase-IIA2_Ca golgi 98.6 1.9E-07 4E-12 91.8 9.4 99 179-280 528-642 (884)
148 PF05116 S6PP: Sucrose-6F-phos 98.6 7.8E-08 1.7E-12 80.3 5.8 49 235-284 161-209 (247)
149 COG4996 Predicted phosphatase 98.6 3.5E-07 7.6E-12 66.0 7.9 84 177-270 39-131 (164)
150 PF03767 Acid_phosphat_B: HAD 98.6 7.1E-08 1.5E-12 79.4 4.8 103 176-284 112-224 (229)
151 COG4087 Soluble P-type ATPase 98.5 2.2E-06 4.7E-11 62.1 10.0 92 178-282 29-120 (152)
152 PRK11033 zntA zinc/cadmium/mer 98.4 1.7E-06 3.6E-11 83.4 11.1 90 179-284 568-657 (741)
153 COG3700 AphA Acid phosphatase 98.4 3E-06 6.6E-11 64.7 9.5 95 180-283 115-213 (237)
154 PLN02423 phosphomannomutase 98.4 1.9E-07 4E-12 78.0 3.3 48 234-286 184-235 (245)
155 PTZ00174 phosphomannomutase; P 98.4 7.8E-07 1.7E-11 74.5 6.6 45 234-282 183-231 (247)
156 smart00775 LNS2 LNS2 domain. T 98.4 7.1E-06 1.5E-10 63.5 11.3 97 180-278 28-142 (157)
157 PRK10187 trehalose-6-phosphate 98.4 4.5E-06 9.9E-11 70.6 10.9 48 236-283 171-222 (266)
158 KOG2630 Enolase-phosphatase E- 98.3 2E-05 4.2E-10 62.9 12.7 102 179-288 123-230 (254)
159 TIGR00685 T6PP trehalose-phosp 98.3 9.7E-07 2.1E-11 73.8 5.9 41 241-281 169-216 (244)
160 TIGR01497 kdpB K+-transporting 98.3 3.6E-06 7.8E-11 79.3 9.4 93 179-285 446-538 (675)
161 PF11019 DUF2608: Protein of u 98.3 5.1E-05 1.1E-09 63.4 14.8 102 179-284 81-212 (252)
162 PRK14010 potassium-transportin 98.2 8.7E-06 1.9E-10 76.8 10.1 97 179-289 441-537 (673)
163 TIGR01116 ATPase-IIA1_Ca sarco 98.2 5.5E-06 1.2E-10 81.8 8.9 104 179-283 537-658 (917)
164 PRK01122 potassium-transportin 98.2 8.7E-06 1.9E-10 76.9 9.7 97 179-289 445-541 (679)
165 PLN02177 glycerol-3-phosphate 98.2 0.00023 5.1E-09 65.1 18.0 97 180-282 111-215 (497)
166 COG2217 ZntA Cation transport 98.2 1.1E-05 2.4E-10 76.4 9.4 96 179-288 537-632 (713)
167 PF05761 5_nucleotid: 5' nucle 98.1 2.4E-05 5.1E-10 70.4 9.6 105 178-282 182-324 (448)
168 PLN02645 phosphoglycolate phos 98.1 3.4E-05 7.4E-10 66.8 10.2 90 179-280 44-136 (311)
169 PRK10517 magnesium-transportin 98.0 1.7E-05 3.6E-10 78.1 8.3 100 179-283 550-665 (902)
170 TIGR01647 ATPase-IIIA_H plasma 98.0 1.5E-05 3.3E-10 77.1 7.6 103 179-282 442-561 (755)
171 TIGR01524 ATPase-IIIB_Mg magne 98.0 2.6E-05 5.6E-10 76.6 9.2 101 179-284 515-631 (867)
172 TIGR02250 FCP1_euk FCP1-like p 98.0 2.7E-05 5.9E-10 60.1 6.8 84 177-270 56-142 (156)
173 TIGR01658 EYA-cons_domain eyes 98.0 0.00077 1.7E-08 54.6 15.1 88 198-290 178-265 (274)
174 PRK15122 magnesium-transportin 98.0 2.8E-05 6.1E-10 76.5 8.5 101 179-284 550-666 (903)
175 TIGR01517 ATPase-IIB_Ca plasma 98.0 2.7E-05 5.8E-10 77.3 8.3 100 179-281 579-694 (941)
176 PF05152 DUF705: Protein of un 97.9 0.00013 2.7E-09 60.6 10.7 82 180-265 143-256 (297)
177 COG5663 Uncharacterized conser 97.9 0.00022 4.8E-09 54.1 10.9 96 179-289 72-168 (194)
178 TIGR01523 ATPase-IID_K-Na pota 97.9 6.3E-05 1.4E-09 75.1 9.1 102 179-281 646-771 (1053)
179 COG2503 Predicted secreted aci 97.8 0.0003 6.6E-09 56.8 10.7 86 176-270 119-208 (274)
180 KOG3107 Predicted haloacid deh 97.8 0.001 2.2E-08 57.1 13.7 87 198-290 373-459 (468)
181 COG0474 MgtA Cation transport 97.8 9.4E-05 2E-09 73.0 8.5 102 179-282 547-665 (917)
182 KOG0207 Cation transport ATPas 97.7 0.0002 4.4E-09 68.0 8.7 97 179-289 723-819 (951)
183 TIGR01689 EcbF-BcbF capsule bi 97.6 0.001 2.2E-08 49.2 9.8 30 179-208 24-53 (126)
184 COG5610 Predicted hydrolase (H 97.6 0.00044 9.6E-09 60.8 8.7 123 156-281 70-201 (635)
185 TIGR01106 ATPase-IIC_X-K sodiu 97.5 0.00032 6.9E-09 70.1 8.6 102 179-281 568-709 (997)
186 PRK14501 putative bifunctional 97.5 0.0015 3.3E-08 63.3 11.9 37 237-275 655-691 (726)
187 PF08235 LNS2: LNS2 (Lipin/Ned 97.4 0.0017 3.7E-08 49.7 9.6 96 180-278 28-142 (157)
188 KOG0202 Ca2+ transporting ATPa 97.4 0.00085 1.8E-08 63.4 8.7 110 179-289 584-712 (972)
189 TIGR01657 P-ATPase-V P-type AT 97.4 0.00094 2E-08 67.3 9.6 41 179-220 656-696 (1054)
190 PLN02580 trehalose-phosphatase 97.3 0.0058 1.3E-07 54.0 12.4 45 238-282 300-352 (384)
191 TIGR01494 ATPase_P-type ATPase 97.3 0.0017 3.7E-08 60.2 9.2 85 179-280 347-431 (499)
192 KOG2470 Similar to IMP-GMP spe 97.2 0.0083 1.8E-07 51.2 12.1 102 178-279 239-372 (510)
193 COG3882 FkbH Predicted enzyme 97.2 0.0034 7.4E-08 55.9 10.0 101 179-288 255-359 (574)
194 TIGR02245 HAD_IIID1 HAD-superf 97.2 0.0023 4.9E-08 51.2 8.0 95 179-279 45-153 (195)
195 COG2216 KdpB High-affinity K+ 97.2 0.0014 3E-08 58.8 7.3 100 180-293 448-547 (681)
196 TIGR01652 ATPase-Plipid phosph 97.1 0.002 4.4E-08 65.0 9.0 41 179-220 631-671 (1057)
197 COG4030 Uncharacterized protei 97.0 0.047 1E-06 44.0 14.0 42 177-220 81-122 (315)
198 TIGR01452 PGP_euk phosphoglyco 96.9 0.0088 1.9E-07 51.0 10.0 88 179-279 18-108 (279)
199 PLN02205 alpha,alpha-trehalose 96.8 0.0041 8.9E-08 60.9 7.8 39 237-275 760-801 (854)
200 COG3769 Predicted hydrolase (H 96.7 0.002 4.4E-08 51.4 4.1 23 257-279 211-233 (274)
201 PLN03190 aminophospholipid tra 96.6 0.0059 1.3E-07 61.9 7.5 37 179-215 726-762 (1178)
202 PF06437 ISN1: IMP-specific 5' 96.6 0.032 6.9E-07 48.5 10.6 46 241-288 351-405 (408)
203 KOG0206 P-type ATPase [General 96.6 0.0089 1.9E-07 59.5 8.0 35 179-213 651-685 (1151)
204 KOG2134 Polynucleotide kinase 96.5 0.013 2.9E-07 50.8 7.5 95 179-278 104-229 (422)
205 PF03031 NIF: NLI interacting 96.4 0.0031 6.7E-08 48.9 3.2 94 178-277 35-128 (159)
206 KOG3128 Uncharacterized conser 96.3 0.0064 1.4E-07 49.6 4.7 98 177-274 136-247 (298)
207 KOG2961 Predicted hydrolase (H 96.3 0.032 7E-07 42.0 8.0 95 180-286 62-171 (190)
208 PF05822 UMPH-1: Pyrimidine 5' 96.3 0.013 2.7E-07 48.4 6.2 108 169-279 80-204 (246)
209 PLN02499 glycerol-3-phosphate 96.2 0.037 7.9E-07 50.3 9.1 91 187-283 101-198 (498)
210 PRK10444 UMP phosphatase; Prov 96.1 0.05 1.1E-06 45.5 9.0 102 179-282 17-142 (248)
211 COG4502 5'(3')-deoxyribonucleo 95.8 0.026 5.7E-07 41.8 5.4 87 178-286 67-155 (180)
212 PLN02151 trehalose-phosphatase 95.8 0.082 1.8E-06 46.3 9.2 36 239-274 269-307 (354)
213 TIGR01457 HAD-SF-IIA-hyp2 HAD- 95.5 0.16 3.5E-06 42.5 9.8 101 179-282 17-143 (249)
214 KOG1618 Predicted phosphatase 95.4 0.056 1.2E-06 45.8 6.5 89 180-280 52-144 (389)
215 KOG0210 P-type ATPase [Inorgan 95.3 0.32 7E-06 45.8 11.5 27 179-205 658-684 (1051)
216 PF06189 5-nucleotidase: 5'-nu 95.0 0.29 6.3E-06 40.6 9.4 71 195-283 186-259 (264)
217 TIGR02468 sucrsPsyn_pln sucros 95.0 0.37 8E-06 48.2 11.8 50 234-283 951-1002(1050)
218 TIGR01460 HAD-SF-IIA Haloacid 94.6 0.34 7.5E-06 40.2 9.4 86 179-277 14-102 (236)
219 PLN03017 trehalose-phosphatase 94.4 0.091 2E-06 46.2 5.7 34 241-274 285-321 (366)
220 COG1877 OtsB Trehalose-6-phosp 94.4 0.058 1.2E-06 45.3 4.1 43 240-282 183-228 (266)
221 TIGR01458 HAD-SF-IIA-hyp3 HAD- 94.2 0.074 1.6E-06 44.8 4.6 49 180-231 22-73 (257)
222 KOG0204 Calcium transporting A 94.1 0.19 4E-06 48.4 7.2 106 179-288 647-772 (1034)
223 KOG0323 TFIIF-interacting CTD 92.5 0.5 1.1E-05 44.5 7.3 60 177-238 199-258 (635)
224 KOG0209 P-type ATPase [Inorgan 92.2 0.19 4.1E-06 48.2 4.2 40 179-219 675-714 (1160)
225 KOG2882 p-Nitrophenyl phosphat 91.5 2.8 6E-05 35.7 9.9 95 179-284 38-134 (306)
226 KOG2469 IMP-GMP specific 5'-nu 91.4 0.54 1.2E-05 41.4 5.9 102 181-282 200-333 (424)
227 KOG4549 Magnesium-dependent ph 91.0 1.4 2.9E-05 32.3 6.6 84 178-267 43-134 (144)
228 TIGR01456 CECR5 HAD-superfamil 91.0 0.96 2.1E-05 39.4 7.2 86 179-280 16-109 (321)
229 PRK00192 mannosyl-3-phosphogly 90.6 0.61 1.3E-05 39.6 5.5 42 179-221 21-62 (273)
230 PRK00994 F420-dependent methyl 90.2 4.2 9.2E-05 33.3 9.4 90 188-284 23-118 (277)
231 PF05690 ThiG: Thiazole biosyn 90.0 8.3 0.00018 31.7 11.0 97 177-284 102-206 (247)
232 KOG2116 Protein involved in pl 89.9 1.6 3.5E-05 40.9 7.8 94 183-278 562-673 (738)
233 COG5083 SMP2 Uncharacterized p 89.4 0.6 1.3E-05 41.5 4.5 96 183-278 407-517 (580)
234 PF03031 NIF: NLI interacting 88.4 0.25 5.3E-06 38.1 1.4 15 68-82 1-15 (159)
235 PRK10513 sugar phosphate phosp 88.1 1.7 3.7E-05 36.6 6.5 41 179-220 20-60 (270)
236 cd00733 GlyRS_alpha_core Class 88.1 0.73 1.6E-05 37.8 3.9 46 238-284 81-133 (279)
237 TIGR01487 SPP-like sucrose-pho 88.1 1.3 2.7E-05 36.1 5.5 41 179-220 18-58 (215)
238 CHL00162 thiG thiamin biosynth 87.7 10 0.00022 31.6 10.3 98 177-285 116-221 (267)
239 TIGR00388 glyQ glycyl-tRNA syn 87.5 0.85 1.8E-05 37.7 4.0 46 238-284 82-134 (293)
240 PRK09348 glyQ glycyl-tRNA synt 87.5 0.83 1.8E-05 37.6 3.8 46 238-284 85-137 (283)
241 TIGR02463 MPGP_rel mannosyl-3- 86.8 1.5 3.3E-05 35.7 5.3 40 180-220 17-56 (221)
242 KOG3189 Phosphomannomutase [Li 86.7 0.69 1.5E-05 36.7 2.9 28 68-95 12-39 (252)
243 TIGR02461 osmo_MPG_phos mannos 86.5 1.8 3.9E-05 35.6 5.5 40 180-220 16-55 (225)
244 TIGR00099 Cof-subfamily Cof su 86.4 1.6 3.5E-05 36.5 5.4 41 179-220 16-56 (256)
245 PRK01158 phosphoglycolate phos 86.3 1.8 3.9E-05 35.5 5.5 42 179-221 20-61 (230)
246 cd04728 ThiG Thiazole synthase 85.3 20 0.00044 29.7 11.2 101 177-286 102-208 (248)
247 PRK15126 thiamin pyrimidine py 85.1 2 4.3E-05 36.3 5.3 42 179-221 19-60 (272)
248 PRK12702 mannosyl-3-phosphogly 85.0 2.7 5.8E-05 36.0 5.8 42 179-221 18-59 (302)
249 PLN03063 alpha,alpha-trehalose 84.6 1.4 3E-05 43.4 4.6 37 179-215 532-569 (797)
250 TIGR01482 SPP-subfamily Sucros 84.6 2.4 5.2E-05 34.5 5.4 40 180-220 16-55 (225)
251 PRK11840 bifunctional sulfur c 84.3 22 0.00049 30.8 11.1 97 177-285 176-281 (326)
252 PRK10976 putative hydrolase; P 84.2 2.3 4.9E-05 35.8 5.3 41 179-220 19-59 (266)
253 PRK10530 pyridoxal phosphate ( 83.9 2.4 5.3E-05 35.6 5.4 41 179-220 20-60 (272)
254 PLN03064 alpha,alpha-trehalose 83.7 2.6 5.7E-05 42.0 6.0 38 179-216 622-660 (934)
255 KOG0203 Na+/K+ ATPase, alpha s 83.5 3.6 7.9E-05 40.0 6.6 109 179-290 590-741 (1019)
256 COG0561 Cof Predicted hydrolas 83.3 2.6 5.6E-05 35.4 5.2 41 180-221 21-61 (264)
257 PRK03669 mannosyl-3-phosphogly 82.9 3 6.4E-05 35.3 5.5 40 180-220 25-64 (271)
258 TIGR01486 HAD-SF-IIB-MPGP mann 82.7 3 6.6E-05 34.9 5.4 39 181-220 18-56 (256)
259 COG0731 Fe-S oxidoreductases [ 82.7 2.4 5.3E-05 36.2 4.7 39 175-213 88-127 (296)
260 PF08282 Hydrolase_3: haloacid 82.4 3.3 7.2E-05 34.0 5.5 41 179-220 15-55 (254)
261 COG0752 GlyQ Glycyl-tRNA synth 80.6 2.1 4.5E-05 35.1 3.4 47 238-285 86-139 (298)
262 PRK13762 tRNA-modifying enzyme 80.4 8.6 0.00019 33.5 7.5 32 176-207 139-170 (322)
263 COG4850 Uncharacterized conser 79.7 13 0.00028 32.1 7.9 86 178-270 195-293 (373)
264 COG2022 ThiG Uncharacterized e 79.5 34 0.00073 28.2 9.8 98 178-284 110-213 (262)
265 PF06014 DUF910: Bacterial pro 79.0 1.2 2.6E-05 28.2 1.3 25 244-272 7-31 (62)
266 TIGR01484 HAD-SF-IIB HAD-super 78.8 4.6 0.0001 32.3 5.1 38 179-216 17-54 (204)
267 COG0191 Fba Fructose/tagatose 77.7 32 0.0007 29.3 9.7 99 184-288 6-111 (286)
268 PF13580 SIS_2: SIS domain; PD 76.9 28 0.00062 26.0 9.7 103 180-282 20-137 (138)
269 TIGR02329 propionate_PrpR prop 76.3 19 0.00042 33.8 8.9 88 183-284 85-172 (526)
270 PRK15424 propionate catabolism 74.9 21 0.00046 33.5 8.8 88 183-284 95-182 (538)
271 PF06506 PrpR_N: Propionate ca 74.4 11 0.00024 29.6 6.0 87 183-286 65-154 (176)
272 PRK00208 thiG thiazole synthas 72.8 55 0.0012 27.3 11.0 101 177-286 102-208 (250)
273 PF02091 tRNA-synt_2e: Glycyl- 72.3 1.2 2.5E-05 36.9 -0.1 55 221-284 71-132 (284)
274 PF01993 MTD: methylene-5,6,7, 71.3 17 0.00036 30.0 6.2 84 195-285 30-118 (276)
275 COG0019 LysA Diaminopimelate d 70.5 32 0.00068 31.0 8.5 45 250-294 91-137 (394)
276 PF04413 Glycos_transf_N: 3-De 69.9 34 0.00074 27.2 7.8 96 183-292 36-135 (186)
277 smart00577 CPDc catalytic doma 69.8 2.8 6.2E-05 31.8 1.6 15 68-82 3-17 (148)
278 PF04413 Glycos_transf_N: 3-De 69.4 6.3 0.00014 31.3 3.5 75 186-269 109-185 (186)
279 PRK12737 gatY tagatose-bisphos 69.3 73 0.0016 27.3 10.3 100 183-288 5-110 (284)
280 TIGR01485 SPP_plant-cyano sucr 69.0 10 0.00022 31.5 5.0 38 182-220 24-61 (249)
281 PRK14908 glycyl-tRNA synthetas 68.6 6.1 0.00013 39.6 3.9 47 238-285 86-139 (1000)
282 PF03808 Glyco_tran_WecB: Glyc 67.7 43 0.00094 26.1 7.9 26 240-265 86-111 (172)
283 TIGR01858 tag_bisphos_ald clas 67.6 79 0.0017 27.1 10.4 99 184-288 4-108 (282)
284 PTZ00174 phosphomannomutase; P 67.4 11 0.00025 31.3 4.9 36 179-214 22-57 (247)
285 PLN02887 hydrolase family prot 66.9 12 0.00026 35.5 5.4 41 179-220 325-365 (580)
286 cd01766 Ufm1 Urm1-like ubiquit 66.7 17 0.00037 23.7 4.3 45 234-278 22-66 (82)
287 TIGR02251 HIF-SF_euk Dullard-l 66.3 3.5 7.5E-05 32.0 1.5 15 68-82 2-16 (162)
288 TIGR02826 RNR_activ_nrdG3 anae 65.0 21 0.00046 27.1 5.5 28 180-207 73-100 (147)
289 PRK10422 lipopolysaccharide co 63.9 77 0.0017 27.8 9.7 93 183-292 203-298 (352)
290 TIGR02193 heptsyl_trn_I lipopo 63.7 95 0.0021 26.7 10.1 94 182-295 198-293 (319)
291 PRK10187 trehalose-6-phosphate 62.8 11 0.00023 31.9 3.9 38 179-216 36-74 (266)
292 PRK07709 fructose-bisphosphate 62.4 1E+02 0.0022 26.5 11.0 102 183-288 5-113 (285)
293 cd01994 Alpha_ANH_like_IV This 62.1 38 0.00082 27.1 6.7 36 257-292 90-132 (194)
294 PRK08185 hypothetical protein; 61.6 76 0.0017 27.1 8.7 98 185-288 2-104 (283)
295 PF14336 DUF4392: Domain of un 61.2 47 0.001 28.6 7.5 26 182-207 63-88 (291)
296 PF02358 Trehalose_PPase: Treh 61.1 6.1 0.00013 32.6 2.1 37 240-276 166-205 (235)
297 TIGR02201 heptsyl_trn_III lipo 60.9 90 0.002 27.2 9.6 95 183-294 201-298 (344)
298 PRK08005 epimerase; Validated 60.7 90 0.002 25.4 10.8 94 182-282 93-191 (210)
299 cd01445 TST_Repeats Thiosulfat 60.4 35 0.00076 25.5 5.9 49 236-284 75-132 (138)
300 PRK07998 gatY putative fructos 60.0 1.1E+02 0.0024 26.2 10.2 100 183-288 5-110 (283)
301 cd06533 Glyco_transf_WecG_TagA 59.2 66 0.0014 25.1 7.5 27 185-212 36-62 (171)
302 COG4483 Uncharacterized protei 58.5 12 0.00026 23.8 2.5 26 244-273 7-32 (68)
303 TIGR02495 NrdG2 anaerobic ribo 57.8 91 0.002 24.5 9.5 32 176-207 71-102 (191)
304 KOG1618 Predicted phosphatase 57.6 10 0.00022 32.7 2.7 48 235-282 268-340 (389)
305 TIGR00236 wecB UDP-N-acetylglu 57.3 70 0.0015 28.1 8.3 98 184-284 16-119 (365)
306 TIGR00167 cbbA ketose-bisphosp 57.2 1.3E+02 0.0027 25.9 10.0 102 183-288 5-113 (288)
307 PRK10076 pyruvate formate lyas 56.6 18 0.00039 29.5 4.0 29 179-207 50-79 (213)
308 TIGR03365 Bsubt_queE 7-cyano-7 56.4 9.8 0.00021 31.6 2.5 32 176-207 81-112 (238)
309 TIGR00262 trpA tryptophan synt 56.0 1.2E+02 0.0027 25.4 10.2 98 180-284 125-229 (256)
310 KOG3111 D-ribulose-5-phosphate 55.9 1.1E+02 0.0023 24.6 9.3 98 180-282 97-197 (224)
311 PRK14502 bifunctional mannosyl 55.6 25 0.00055 33.9 5.3 40 180-220 434-473 (694)
312 PRK08610 fructose-bisphosphate 55.4 1.3E+02 0.0029 25.7 10.6 101 184-288 6-113 (286)
313 PRK11145 pflA pyruvate formate 55.0 45 0.00098 27.6 6.4 31 176-206 79-110 (246)
314 TIGR02250 FCP1_euk FCP1-like p 54.7 7.5 0.00016 29.9 1.5 18 66-83 5-22 (156)
315 PRK10964 ADP-heptose:LPS hepto 54.6 79 0.0017 27.3 8.1 94 183-294 198-291 (322)
316 cd00947 TBP_aldolase_IIB Tagat 54.1 1.4E+02 0.003 25.5 10.1 98 185-288 2-105 (276)
317 cd03789 GT1_LPS_heptosyltransf 54.0 1.3E+02 0.0029 25.2 9.9 98 180-293 138-235 (279)
318 COG1911 RPL30 Ribosomal protei 53.6 28 0.00061 24.2 3.9 44 179-222 19-62 (100)
319 PF10113 Fibrillarin_2: Fibril 53.0 33 0.00072 30.8 5.2 47 240-286 207-258 (505)
320 COG5426 Uncharacterized membra 52.8 39 0.00085 26.9 5.0 82 178-265 28-120 (254)
321 smart00540 LEM in nuclear memb 52.2 18 0.00038 21.3 2.4 32 185-216 9-40 (44)
322 KOG2469 IMP-GMP specific 5'-nu 52.2 11 0.00025 33.4 2.3 21 62-82 22-42 (424)
323 KOG0622 Ornithine decarboxylas 52.0 1.3E+02 0.0028 27.2 8.6 80 199-296 85-166 (448)
324 PRK07084 fructose-bisphosphate 51.9 1.6E+02 0.0036 25.7 9.7 102 183-288 11-121 (321)
325 PRK12738 kbaY tagatose-bisphos 51.9 1.5E+02 0.0033 25.4 10.4 99 184-288 6-110 (286)
326 COG2897 SseA Rhodanese-related 51.7 40 0.00086 28.9 5.4 55 235-289 69-130 (285)
327 PRK13125 trpA tryptophan synth 51.0 1.4E+02 0.0031 24.7 10.5 95 182-283 116-215 (244)
328 PF05761 5_nucleotid: 5' nucle 50.7 19 0.00042 32.9 3.6 20 64-83 9-28 (448)
329 COG1922 WecG Teichoic acid bio 50.6 77 0.0017 26.6 6.8 19 246-264 152-170 (253)
330 COG2241 CobL Precorrin-6B meth 50.6 72 0.0016 25.9 6.5 77 195-282 68-147 (210)
331 PRK06552 keto-hydroxyglutarate 50.5 1.4E+02 0.003 24.4 9.2 88 187-283 6-96 (213)
332 PRK09195 gatY tagatose-bisphos 50.1 1.7E+02 0.0036 25.2 10.2 99 184-288 6-110 (284)
333 PF03332 PMM: Eukaryotic phosp 50.0 34 0.00074 27.9 4.5 32 255-286 175-210 (220)
334 COG0826 Collagenase and relate 49.3 1.9E+02 0.0041 25.6 11.3 103 180-294 47-156 (347)
335 TIGR02471 sucr_syn_bact_C sucr 48.9 41 0.00089 27.6 5.1 33 186-220 22-54 (236)
336 cd02071 MM_CoA_mut_B12_BD meth 47.8 1.1E+02 0.0023 22.3 10.3 91 187-284 19-111 (122)
337 KOG0391 SNF2 family DNA-depend 47.7 80 0.0017 32.8 7.3 91 185-285 1266-1356(1958)
338 PRK03692 putative UDP-N-acetyl 47.5 1.2E+02 0.0027 25.2 7.7 79 186-272 96-176 (243)
339 cd05008 SIS_GlmS_GlmD_1 SIS (S 46.5 36 0.00079 24.6 4.0 30 180-209 58-87 (126)
340 cd05014 SIS_Kpsf KpsF-like pro 46.3 31 0.00067 25.0 3.7 30 180-209 59-88 (128)
341 PRK14021 bifunctional shikimat 46.3 2.2E+02 0.0048 26.9 10.0 99 182-284 195-304 (542)
342 cd05007 SIS_Etherase N-acetylm 46.3 1.8E+02 0.0039 24.4 12.7 95 188-285 43-155 (257)
343 COG1834 N-Dimethylarginine dim 45.8 1.6E+02 0.0035 24.9 8.0 86 185-273 41-146 (267)
344 cd06539 CIDE_N_A CIDE_N domain 45.3 18 0.00039 24.1 1.9 19 67-85 40-58 (78)
345 PRK05835 fructose-bisphosphate 45.2 2.1E+02 0.0045 24.9 10.2 98 184-287 5-109 (307)
346 TIGR02195 heptsyl_trn_II lipop 45.1 2.1E+02 0.0045 24.8 10.7 90 183-290 195-285 (334)
347 cd06537 CIDE_N_B CIDE_N domain 44.6 19 0.0004 24.2 1.9 19 67-85 39-57 (81)
348 PRK05301 pyrroloquinoline quin 44.3 51 0.0011 29.3 5.4 31 176-206 71-101 (378)
349 TIGR00696 wecB_tagA_cpsF bacte 44.2 1.6E+02 0.0034 23.2 7.9 30 186-216 39-68 (177)
350 PRK08649 inosine 5-monophospha 44.0 2.4E+02 0.0052 25.2 10.6 88 184-282 120-215 (368)
351 smart00266 CAD Domains present 42.9 20 0.00044 23.6 1.9 19 67-85 38-56 (74)
352 PRK12857 fructose-1,6-bisphosp 42.9 2.2E+02 0.0047 24.5 10.2 99 184-288 6-110 (284)
353 KOG0208 Cation transport ATPas 42.8 60 0.0013 32.7 5.7 41 179-220 705-745 (1140)
354 PF13911 AhpC-TSA_2: AhpC/TSA 42.8 97 0.0021 22.0 5.8 31 185-215 3-33 (115)
355 KOG0207 Cation transport ATPas 42.3 3.8E+02 0.0082 27.1 12.5 81 177-279 684-765 (951)
356 cd05710 SIS_1 A subgroup of th 42.3 46 0.001 24.0 4.0 30 180-209 59-88 (120)
357 COG3769 Predicted hydrolase (H 42.0 45 0.00097 27.4 4.0 36 184-220 28-63 (274)
358 TIGR03278 methan_mark_10 putat 41.8 56 0.0012 29.6 5.1 29 177-205 84-113 (404)
359 COG1180 PflA Pyruvate-formate 41.6 39 0.00085 28.5 3.9 29 179-207 96-124 (260)
360 PLN02588 glycerol-3-phosphate 41.5 48 0.001 30.8 4.6 37 180-220 134-170 (525)
361 TIGR01615 A_thal_3542 uncharac 40.9 44 0.00095 24.8 3.5 68 186-265 3-86 (131)
362 PRK11070 ssDNA exonuclease Rec 40.9 3.3E+02 0.0072 26.0 10.4 99 179-285 50-161 (575)
363 PLN02334 ribulose-phosphate 3- 40.7 2E+02 0.0044 23.5 10.6 98 182-283 102-203 (229)
364 cd06831 PLPDE_III_ODC_like_AZI 40.6 1E+02 0.0022 27.8 6.6 45 247-291 72-118 (394)
365 PF04123 DUF373: Domain of unk 40.2 69 0.0015 28.3 5.3 62 183-271 52-115 (344)
366 PLN02951 Molybderin biosynthes 40.1 1.9E+02 0.0041 25.9 8.2 31 176-206 115-147 (373)
367 PF01380 SIS: SIS domain SIS d 40.1 60 0.0013 23.4 4.4 30 180-209 65-94 (131)
368 cd00453 FTBP_aldolase_II Fruct 40.1 2E+02 0.0044 25.3 8.0 99 185-289 2-135 (340)
369 PF12522 UL73_N: Cytomegalovir 39.9 27 0.00058 17.7 1.6 20 5-24 4-23 (27)
370 KOG0205 Plasma membrane H+-tra 39.8 1.2E+02 0.0026 29.4 6.8 100 180-280 493-609 (942)
371 PF00578 AhpC-TSA: AhpC/TSA fa 39.5 78 0.0017 22.5 4.9 37 182-219 46-82 (124)
372 TIGR03470 HpnH hopanoid biosyn 39.4 36 0.00078 29.6 3.5 33 175-207 80-112 (318)
373 TIGR02109 PQQ_syn_pqqE coenzym 39.4 68 0.0015 28.3 5.3 31 176-206 62-92 (358)
374 PRK05718 keto-hydroxyglutarate 39.3 2.1E+02 0.0046 23.3 7.9 88 186-286 7-98 (212)
375 PRK15317 alkyl hydroperoxide r 38.9 1.5E+02 0.0033 27.7 7.8 27 255-281 211-240 (517)
376 PF00389 2-Hacid_dh: D-isomer 38.2 1.6E+02 0.0034 21.5 8.5 80 187-284 11-92 (133)
377 PLN02580 trehalose-phosphatase 38.1 56 0.0012 29.3 4.5 36 178-214 140-175 (384)
378 COG0036 Rpe Pentose-5-phosphat 37.8 2.3E+02 0.005 23.3 10.6 97 179-282 93-197 (220)
379 TIGR01859 fruc_bis_ald_ fructo 37.5 2.6E+02 0.0057 23.9 9.8 98 184-288 4-110 (282)
380 cd00886 MogA_MoaB MogA_MoaB fa 37.5 1.6E+02 0.0036 22.3 6.5 61 227-287 5-73 (152)
381 cd01615 CIDE_N CIDE_N domain, 37.4 28 0.00061 23.3 1.9 19 67-85 40-58 (78)
382 cd00946 FBP_aldolase_IIA Class 37.3 2.9E+02 0.0062 24.5 8.6 99 183-288 3-136 (345)
383 TIGR03140 AhpF alkyl hydropero 37.2 1.7E+02 0.0038 27.3 7.9 29 253-281 210-241 (515)
384 PF06189 5-nucleotidase: 5'-nu 37.1 1.9E+02 0.0042 24.4 7.1 73 194-282 35-109 (264)
385 TIGR03679 arCOG00187 arCOG0018 37.1 2E+02 0.0044 23.4 7.4 35 257-291 88-129 (218)
386 PF06437 ISN1: IMP-specific 5' 37.0 60 0.0013 28.9 4.3 44 177-220 164-207 (408)
387 cd06536 CIDE_N_ICAD CIDE_N dom 36.8 26 0.00056 23.6 1.7 18 68-85 43-60 (80)
388 PRK08745 ribulose-phosphate 3- 36.5 2.4E+02 0.0052 23.2 10.9 95 182-283 97-200 (223)
389 smart00052 EAL Putative diguan 36.5 1.8E+02 0.0039 23.4 7.2 86 184-279 135-228 (241)
390 KOG0780 Signal recognition par 36.3 2.1E+02 0.0046 25.9 7.5 97 180-282 140-248 (483)
391 PF02593 dTMP_synthase: Thymid 36.0 73 0.0016 26.1 4.5 92 178-277 58-156 (217)
392 cd01948 EAL EAL domain. This d 35.9 1.2E+02 0.0025 24.5 6.0 87 183-279 133-227 (240)
393 COG1927 Mtd Coenzyme F420-depe 35.6 2.4E+02 0.0053 22.9 10.7 83 194-283 30-117 (277)
394 TIGR03127 RuMP_HxlB 6-phospho 35.2 63 0.0014 25.2 4.0 31 180-210 84-114 (179)
395 TIGR01282 nifD nitrogenase mol 35.2 3.7E+02 0.008 24.9 12.6 36 239-279 391-426 (466)
396 PF03671 Ufm1: Ubiquitin fold 35.1 13 0.00029 24.2 0.1 35 235-269 23-57 (76)
397 cd05015 SIS_PGI_1 Phosphogluco 35.0 1.7E+02 0.0038 22.3 6.4 86 194-283 48-138 (158)
398 PF02698 DUF218: DUF218 domain 34.9 1.8E+02 0.0039 21.8 6.4 78 204-284 21-107 (155)
399 PRK06806 fructose-bisphosphate 34.5 3E+02 0.0064 23.6 10.4 99 183-287 5-109 (281)
400 PF07085 DRTGG: DRTGG domain; 34.4 32 0.00069 24.2 2.0 34 255-288 40-74 (105)
401 KOG1529 Mercaptopyruvate sulfu 34.2 3E+02 0.0065 23.6 9.6 102 184-288 9-127 (286)
402 PRK08883 ribulose-phosphate 3- 34.0 2.6E+02 0.0057 22.8 9.9 96 181-283 92-196 (220)
403 cd06538 CIDE_N_FSP27 CIDE_N do 34.0 34 0.00073 22.9 1.9 19 67-85 39-57 (79)
404 PRK06801 hypothetical protein; 34.0 3E+02 0.0066 23.6 10.6 99 183-287 5-109 (286)
405 KOG1605 TFIIF-interacting CTD 33.8 24 0.00052 29.7 1.4 100 179-290 131-237 (262)
406 cd05017 SIS_PGI_PMI_1 The memb 33.2 67 0.0014 23.1 3.6 26 180-205 55-80 (119)
407 cd05013 SIS_RpiR RpiR-like pro 33.1 72 0.0016 23.1 3.9 27 181-207 73-99 (139)
408 PRK09196 fructose-1,6-bisphosp 32.9 3.5E+02 0.0076 24.0 10.3 98 183-286 5-109 (347)
409 PF12641 Flavodoxin_3: Flavodo 32.9 1.8E+02 0.0038 22.5 6.0 61 201-265 7-77 (160)
410 TIGR02667 moaB_proteo molybden 32.8 1.6E+02 0.0035 22.7 5.8 46 241-286 24-74 (163)
411 cd04795 SIS SIS domain. SIS (S 32.8 61 0.0013 21.3 3.2 22 181-202 60-81 (87)
412 PLN02151 trehalose-phosphatase 32.7 76 0.0017 28.1 4.4 36 178-214 119-154 (354)
413 COG2200 Rtn c-di-GMP phosphodi 32.7 2.9E+02 0.0064 23.0 8.2 93 182-279 136-231 (256)
414 PRK08304 stage V sporulation p 32.6 1.5E+02 0.0034 26.0 6.1 67 217-285 32-111 (337)
415 COG0602 NrdG Organic radical a 32.2 49 0.0011 26.9 3.0 34 176-209 80-113 (212)
416 TIGR02493 PFLA pyruvate format 32.1 1E+02 0.0022 25.2 5.0 30 176-205 74-104 (235)
417 COG2896 MoaA Molybdenum cofact 32.1 1.3E+02 0.0029 26.2 5.6 84 175-277 67-152 (322)
418 PRK13717 conjugal transfer pro 32.1 21 0.00046 26.2 0.8 16 64-79 42-57 (128)
419 PLN02858 fructose-bisphosphate 31.9 3.5E+02 0.0076 29.1 9.6 101 182-288 1100-1205(1378)
420 COG3882 FkbH Predicted enzyme 31.8 26 0.00057 32.2 1.4 15 65-79 220-234 (574)
421 PRK08354 putative aminotransfe 31.8 3.3E+02 0.0071 23.3 8.8 88 181-287 42-129 (311)
422 cd00885 cinA Competence-damage 31.7 1.7E+02 0.0036 22.8 5.8 59 228-286 5-69 (170)
423 PF02358 Trehalose_PPase: Treh 31.7 46 0.001 27.3 2.8 11 71-81 1-11 (235)
424 PF00532 Peripla_BP_1: Peripla 31.6 2.6E+02 0.0056 23.6 7.5 41 187-231 23-63 (279)
425 COG4821 Uncharacterized protei 31.5 2.8E+02 0.0062 22.5 8.4 98 183-283 26-139 (243)
426 PRK11303 DNA-binding transcrip 31.3 3.3E+02 0.0072 23.2 9.7 50 225-279 239-289 (328)
427 PF01116 F_bP_aldolase: Fructo 31.2 93 0.002 26.7 4.6 100 183-288 4-109 (287)
428 COG1015 DeoB Phosphopentomutas 31.1 3.9E+02 0.0085 23.9 9.3 89 178-267 220-337 (397)
429 cd06259 YdcF-like YdcF-like. Y 30.9 2E+02 0.0043 21.4 6.1 29 246-276 88-119 (150)
430 COG0800 Eda 2-keto-3-deoxy-6-p 30.9 3E+02 0.0064 22.5 7.4 85 186-284 5-94 (211)
431 COG1058 CinA Predicted nucleot 30.7 96 0.0021 26.1 4.4 59 226-284 5-69 (255)
432 cd05006 SIS_GmhA Phosphoheptos 30.7 74 0.0016 24.8 3.7 29 179-207 112-140 (177)
433 PRK10916 ADP-heptose:LPS hepto 30.6 3.7E+02 0.008 23.5 10.2 94 183-290 201-295 (348)
434 PRK10595 SOS cell division inh 30.5 1.1E+02 0.0025 23.7 4.5 40 243-282 68-113 (164)
435 PF02602 HEM4: Uroporphyrinoge 30.4 1.1E+02 0.0025 24.7 5.0 15 187-201 3-17 (231)
436 PF02350 Epimerase_2: UDP-N-ac 30.2 3.6E+02 0.0077 23.8 8.3 93 183-294 201-296 (346)
437 PF01075 Glyco_transf_9: Glyco 30.1 3E+02 0.0066 22.4 8.2 98 183-295 125-222 (247)
438 PF09269 DUF1967: Domain of un 30.1 36 0.00079 22.1 1.5 22 243-264 44-65 (69)
439 PRK06856 DNA polymerase III su 30.0 1.3E+02 0.0028 22.3 4.6 65 190-262 7-71 (128)
440 PRK05752 uroporphyrinogen-III 30.0 3.2E+02 0.007 22.6 9.0 23 179-201 10-32 (255)
441 PF04007 DUF354: Protein of un 29.9 1.8E+02 0.0039 25.6 6.3 90 185-285 17-113 (335)
442 PRK13937 phosphoheptose isomer 29.9 85 0.0018 24.8 4.0 30 180-209 118-147 (188)
443 KOG1605 TFIIF-interacting CTD 29.7 8.9 0.00019 32.3 -1.7 18 65-82 87-104 (262)
444 PLN02423 phosphomannomutase 29.7 94 0.002 25.8 4.4 35 179-214 24-58 (245)
445 TIGR01290 nifB nitrogenase cof 29.6 1.9E+02 0.0041 26.6 6.6 24 183-206 96-121 (442)
446 PF03603 DNA_III_psi: DNA poly 29.4 1.2E+02 0.0025 22.5 4.3 65 190-262 8-72 (128)
447 TIGR01521 FruBisAldo_II_B fruc 29.3 4.1E+02 0.0088 23.6 10.6 97 184-286 4-107 (347)
448 PF03020 LEM: LEM domain; Int 29.0 7.7 0.00017 22.6 -1.6 31 186-216 10-40 (43)
449 cd07018 S49_SppA_67K_type Sign 29.0 2.6E+02 0.0056 22.8 6.8 72 185-267 68-144 (222)
450 COG2044 Predicted peroxiredoxi 28.9 84 0.0018 23.0 3.3 27 179-205 59-85 (120)
451 PRK07114 keto-hydroxyglutarate 28.6 3.3E+02 0.0072 22.3 7.7 88 186-283 7-99 (222)
452 PRK08091 ribulose-phosphate 3- 28.6 3.4E+02 0.0073 22.4 11.2 94 182-282 103-207 (228)
453 cd05005 SIS_PHI Hexulose-6-pho 28.4 93 0.002 24.2 4.0 30 180-209 87-116 (179)
454 cd07023 S49_Sppa_N_C Signal pe 28.4 2.5E+02 0.0055 22.5 6.6 72 185-266 56-132 (208)
455 PRK03670 competence damage-ind 28.4 1.8E+02 0.0039 24.4 5.8 59 227-285 5-70 (252)
456 PRK10494 hypothetical protein; 28.2 2E+02 0.0044 24.2 6.1 41 226-266 123-164 (259)
457 TIGR03595 Obg_CgtA_exten Obg f 28.1 65 0.0014 20.9 2.4 22 243-264 44-65 (69)
458 PRK15473 cbiF cobalt-precorrin 27.9 3.6E+02 0.0078 22.5 10.0 18 185-202 98-115 (257)
459 PRK13361 molybdenum cofactor b 27.9 2.2E+02 0.0048 24.8 6.6 31 176-206 70-102 (329)
460 TIGR00441 gmhA phosphoheptose 27.9 91 0.002 23.7 3.7 28 180-207 91-118 (154)
461 PRK10727 DNA-binding transcrip 27.7 3.4E+02 0.0074 23.4 7.8 15 85-99 77-91 (343)
462 PF04131 NanE: Putative N-acet 27.5 3.2E+02 0.007 21.9 6.6 92 182-287 79-178 (192)
463 TIGR03151 enACPred_II putative 27.5 4.1E+02 0.0088 23.0 9.8 87 185-283 99-191 (307)
464 TIGR01285 nifN nitrogenase mol 27.4 4.8E+02 0.01 23.8 9.5 20 259-279 376-395 (432)
465 PF02017 CIDE-N: CIDE-N domain 27.2 44 0.00094 22.4 1.5 18 67-84 40-57 (78)
466 PF14097 SpoVAE: Stage V sporu 27.0 3.1E+02 0.0067 21.5 6.3 63 197-265 1-63 (180)
467 PRK01395 V-type ATP synthase s 27.0 1.2E+02 0.0026 21.5 3.9 29 257-286 5-33 (104)
468 COG0541 Ffh Signal recognition 26.5 2.8E+02 0.0061 25.4 6.8 99 179-282 138-247 (451)
469 cd01976 Nitrogenase_MoFe_alpha 26.4 5E+02 0.011 23.6 14.5 39 239-282 356-394 (421)
470 COG3423 Nlp Predicted transcri 26.3 35 0.00076 22.6 0.9 22 238-259 44-65 (82)
471 PRK09140 2-dehydro-3-deoxy-6-p 26.1 2.9E+02 0.0064 22.3 6.5 29 187-216 3-31 (206)
472 PRK01215 competence damage-ind 25.7 2.2E+02 0.0048 24.0 5.9 46 241-286 25-73 (264)
473 COG2099 CobK Precorrin-6x redu 25.5 4.1E+02 0.0089 22.4 7.2 99 178-284 111-231 (257)
474 COG0761 lytB 4-Hydroxy-3-methy 25.3 4.4E+02 0.0096 22.7 7.6 45 242-290 228-273 (294)
475 cd06589 GH31 The enzymes of gl 25.2 83 0.0018 26.5 3.3 28 179-206 63-90 (265)
476 KOG3483 Uncharacterized conser 25.2 1E+02 0.0022 20.3 2.8 45 234-278 33-77 (94)
477 PRK10834 vancomycin high tempe 24.9 1.3E+02 0.0027 25.1 4.1 37 244-282 129-168 (239)
478 TIGR01465 cobM_cbiF precorrin- 24.9 3.8E+02 0.0081 21.7 9.1 41 177-220 81-121 (229)
479 PF00875 DNA_photolyase: DNA p 24.8 1.1E+02 0.0025 23.3 3.8 39 180-219 51-89 (165)
480 PLN02591 tryptophan synthase 24.6 4.2E+02 0.0091 22.2 10.4 99 180-284 116-220 (250)
481 PRK13790 phosphoribosylamine-- 24.4 3.7E+02 0.008 24.0 7.4 57 73-141 27-83 (379)
482 PRK00414 gmhA phosphoheptose i 24.1 1.3E+02 0.0027 24.0 4.0 28 180-207 123-150 (192)
483 PF05240 APOBEC_C: APOBEC-like 23.9 1.2E+02 0.0026 18.8 2.9 23 182-204 2-24 (55)
484 TIGR02845 spore_V_AD stage V s 23.7 3.5E+02 0.0076 23.7 6.7 66 217-284 26-104 (327)
485 cd03018 PRX_AhpE_like Peroxire 23.6 2E+02 0.0044 21.1 5.0 38 181-219 48-85 (149)
486 COG0373 HemA Glutamyl-tRNA red 23.6 3.3E+02 0.0071 24.9 6.8 60 188-248 194-262 (414)
487 PRK13938 phosphoheptose isomer 23.6 1.3E+02 0.0028 24.1 3.9 30 180-209 125-154 (196)
488 COG0378 HypB Ni2+-binding GTPa 23.5 4E+02 0.0087 21.5 8.0 73 185-265 31-106 (202)
489 PRK13789 phosphoribosylamine-- 23.4 4.5E+02 0.0098 24.0 7.9 55 74-140 69-123 (426)
490 COG1519 KdtA 3-deoxy-D-manno-o 23.3 4.8E+02 0.01 23.8 7.6 92 184-289 65-160 (419)
491 PF01113 DapB_N: Dihydrodipico 23.3 1.8E+02 0.004 21.1 4.4 35 182-216 78-112 (124)
492 KOG2832 TFIIF-interacting CTD 23.2 3.9E+02 0.0085 23.8 6.9 80 179-266 214-294 (393)
493 PRK10060 RNase II stability mo 23.1 5.1E+02 0.011 25.2 8.6 93 181-279 540-636 (663)
494 PRK10401 DNA-binding transcrip 23.0 4.7E+02 0.01 22.5 7.8 15 85-99 77-91 (346)
495 TIGR01369 CPSaseII_lrg carbamo 22.9 6.8E+02 0.015 26.1 9.7 97 184-280 577-709 (1050)
496 TIGR02494 PFLE_PFLC glycyl-rad 22.9 97 0.0021 26.4 3.4 31 176-206 134-165 (295)
497 cd03017 PRX_BCP Peroxiredoxin 22.9 2.3E+02 0.0051 20.5 5.1 37 182-219 44-80 (140)
498 cd00381 IMPDH IMPDH: The catal 22.9 5.2E+02 0.011 22.6 9.3 89 182-283 120-227 (325)
499 TIGR01520 FruBisAldo_II_A fruc 22.8 5.5E+02 0.012 22.9 9.4 101 182-288 13-148 (357)
500 PF02350 Epimerase_2: UDP-N-ac 22.7 1.7E+02 0.0037 25.8 4.9 89 190-284 2-100 (346)
No 1
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=100.00 E-value=2.4e-32 Score=232.50 Aligned_cols=218 Identities=54% Similarity=0.940 Sum_probs=160.4
Q ss_pred CcCCccEEEEecCCccccch-hHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHHHHHHcCCCCC
Q 022348 63 SSQSLQALIFDCDGVIIESE-HLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSS 141 (298)
Q Consensus 63 ~~~~~k~viFD~DGTL~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~ 141 (298)
....+++|||||||||+|+. ..+..+|.++++++|++... +....+..+.. +|++...+..++...+++..
T Consensus 36 ~~~~~k~VIFDlDGTLvDS~~~~~~~a~~~~l~~~G~~~~~-------~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~ 107 (286)
T PLN02779 36 ASALPEALLFDCDGVLVETERDGHRVAFNDAFKEFGLRPVE-------WDVELYDELLN-IGGGKERMTWYFNENGWPTS 107 (286)
T ss_pred cccCCcEEEEeCceeEEccccHHHHHHHHHHHHHcCCCCCC-------CCHHHHHHHHc-cCCChHHHHHHHHHcCCCcc
Confidence 34468999999999999999 99999999999999884211 12233333333 77777667666665555432
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCcc
Q 022348 142 TIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMER 221 (298)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~ 221 (298)
.+ ...+..++...+..+.+.+.+.+.|...+....+.++||+.++|+.|+++|++++|+||+....+...++.+.+...
T Consensus 108 ~~-~~~~~~~e~~~~~~~~~~~~~~~~y~~~~~~~~~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~ 186 (286)
T PLN02779 108 TI-EKAPKDEEERKELVDSLHDRKTELFKELIESGALPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPER 186 (286)
T ss_pred cc-ccCCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccc
Confidence 22 11112233334445555555666677665444568999999999999999999999999999988888887622232
Q ss_pred ccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEE-cCCCchhHh
Q 022348 222 FEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVIT-YTSSTAEQV 290 (298)
Q Consensus 222 ~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~-~~~~~~~~~ 290 (298)
+..|+.+ ++++++..||+|++|..+++++|++|++|+||||+.+|+++|+++|+.+|++ ++....+++
T Consensus 187 ~~~~~~v-~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l 255 (286)
T PLN02779 187 AQGLDVF-AGDDVPKKKPDPDIYNLAAETLGVDPSRCVVVEDSVIGLQAAKAAGMRCIVTKSSYTADEDF 255 (286)
T ss_pred cCceEEE-eccccCCCCCCHHHHHHHHHHhCcChHHEEEEeCCHHhHHHHHHcCCEEEEEccCCcccccc
Confidence 3224555 7888888999999999999999999999999999999999999999999966 444444444
No 2
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=100.00 E-value=8.8e-31 Score=219.36 Aligned_cols=196 Identities=24% Similarity=0.357 Sum_probs=152.7
Q ss_pred CCccEEEEecCCccccch-hHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHHHHHHcCCCCCcc
Q 022348 65 QSLQALIFDCDGVIIESE-HLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTI 143 (298)
Q Consensus 65 ~~~k~viFD~DGTL~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~ 143 (298)
..+|+|||||||||+|+. ..+.++|..+++++|+.... .+.+....|.+.......+...+.
T Consensus 22 ~~~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~------------~e~~~~~~G~~~~~~~~~l~~~~~----- 84 (260)
T PLN03243 22 CGWLGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPP------------AFLLKRAEGMKNEQAISEVLCWSR----- 84 (260)
T ss_pred CCceEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCH------------HHHHHHhcCCCHHHHHHHHhccCC-----
Confidence 379999999999999996 66778999999999986433 123344567666554433321110
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCcccc
Q 022348 144 FDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFE 223 (298)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~ 223 (298)
..+. ...+.+.+...+... ......++||+.++|+.|+++|++++|+||+....+...++.+ ++..+
T Consensus 85 ------~~~~----~~~l~~~~~~~~~~~-~~~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~-gl~~~- 151 (260)
T PLN03243 85 ------DFLQ----MKRLAIRKEDLYEYM-QGGLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAV-GMEGF- 151 (260)
T ss_pred ------CHHH----HHHHHHHHHHHHHHH-HccCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHc-CCHhh-
Confidence 1111 223333333434322 2345689999999999999999999999999999999999998 99988
Q ss_pred CcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCCCchhHhh
Q 022348 224 GLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQVR 291 (298)
Q Consensus 224 ~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~~~ 291 (298)
|+.+++++++...||+|++|..+++++|+.|++|+||||+..|+++|+++|+.+|++++......+.
T Consensus 152 -Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l~IgDs~~Di~aA~~aG~~~i~v~g~~~~~~l~ 218 (260)
T PLN03243 152 -FSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERCIVFGNSNSSVEAAHDGCMKCVAVAGKHPVYELS 218 (260)
T ss_pred -CcEEEecccCCCCCCCHHHHHHHHHHhCCChHHeEEEcCCHHHHHHHHHcCCEEEEEecCCchhhhc
Confidence 9999999999999999999999999999999999999999999999999999999888765555443
No 3
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.98 E-value=1.3e-30 Score=218.16 Aligned_cols=202 Identities=24% Similarity=0.373 Sum_probs=150.9
Q ss_pred CCcCCccEEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHHHHHHcCCCCC
Q 022348 62 ASSQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSS 141 (298)
Q Consensus 62 ~~~~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~ 141 (298)
....++++|+|||||||+|+...+..+|.++++++|..... ...... ......|.+.......+...
T Consensus 17 ~~~~~~k~viFDlDGTLiDs~~~~~~a~~~~~~~~g~~~g~------~~~~~~--~~~~~~G~~~~~~~~~~~~~----- 83 (248)
T PLN02770 17 SGLAPLEAVLFDVDGTLCDSDPLHYYAFREMLQEINFNGGV------PITEEF--FVENIAGKHNEDIALGLFPD----- 83 (248)
T ss_pred cccCccCEEEEcCCCccCcCHHHHHHHHHHHHHHhccccCC------CCCHHH--HHHHcCCCCHHHHHHHHcCc-----
Confidence 34557999999999999999999999999999998754211 001111 12223455444332221100
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCcc
Q 022348 142 TIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMER 221 (298)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~ 221 (298)
..+.. ..+...+...|..... ....++||+.++|+.|+++|++++|+||+....++..++.+ ++..
T Consensus 84 --------~~~~~----~~~~~~~~~~y~~~~~-~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~-gl~~ 149 (248)
T PLN02770 84 --------DLERG----LKFTDDKEALFRKLAS-EQLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLL-GLSD 149 (248)
T ss_pred --------chhhH----HHHHHHHHHHHHHHHH-hcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHc-CChh
Confidence 00111 1122233344444432 34689999999999999999999999999999999999998 9999
Q ss_pred ccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCCCchhHhhh
Q 022348 222 FEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQVRI 292 (298)
Q Consensus 222 ~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~~~~ 292 (298)
+ ||.++++++++.+||+|++|..+++++|++|++|++|||+..|+++|+++|+.+|++..+...+++..
T Consensus 150 ~--Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l~vgDs~~Di~aA~~aGi~~i~v~~g~~~~~l~~ 218 (248)
T PLN02770 150 F--FQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHTFVFEDSVSGIKAGVAAGMPVVGLTTRNPESLLME 218 (248)
T ss_pred h--CcEEEecCcCCCCCCChHHHHHHHHHhCCChhHEEEEcCCHHHHHHHHHCCCEEEEEeCCCCHHHHhh
Confidence 8 99999999999999999999999999999999999999999999999999999997754445555544
No 4
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.97 E-value=2.7e-30 Score=211.99 Aligned_cols=192 Identities=19% Similarity=0.276 Sum_probs=149.0
Q ss_pred CccEEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHHHHHHcCCCCCcccC
Q 022348 66 SLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTIFD 145 (298)
Q Consensus 66 ~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~ 145 (298)
++++|+||+||||+|+...+.++|.+++++++..... .+++...+|.+..+.. ...+
T Consensus 2 ~~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~~G~~~~~~~---~~~~-------- 58 (214)
T PRK13288 2 KINTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYK------------REDVLPFIGPSLHDTF---SKID-------- 58 (214)
T ss_pred CccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCCCCC------------HHHHHHHhCcCHHHHH---HhcC--------
Confidence 6899999999999999999999999999998754322 1234445565543322 2111
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCc
Q 022348 146 NPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGL 225 (298)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~f 225 (298)
.... +.+...+.+.+.... .....++||+.++|+.|+++|++++|+||+....+...++.+ ++..+ |
T Consensus 59 -----~~~~----~~~~~~~~~~~~~~~-~~~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~-gl~~~--f 125 (214)
T PRK13288 59 -----ESKV----EEMITTYREFNHEHH-DELVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLT-GLDEF--F 125 (214)
T ss_pred -----HHHH----HHHHHHHHHHHHHhh-hhhcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc-CChhc--e
Confidence 1112 222222333333221 234579999999999999999999999999999999999998 99988 9
Q ss_pred ceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEE-cCCCchhHhhhc
Q 022348 226 DCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVIT-YTSSTAEQVRII 293 (298)
Q Consensus 226 d~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~-~~~~~~~~~~~~ 293 (298)
+.++++++....||+|++|..+++++|++|++|++|||+.+|+++|+++|+.++++ |+.....++.+.
T Consensus 126 ~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~iGDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~ 194 (214)
T PRK13288 126 DVVITLDDVEHAKPDPEPVLKALELLGAKPEEALMVGDNHHDILAGKNAGTKTAGVAWTIKGREYLEQY 194 (214)
T ss_pred eEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999955 665666655543
No 5
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.97 E-value=7e-30 Score=209.90 Aligned_cols=200 Identities=24% Similarity=0.431 Sum_probs=158.7
Q ss_pred CCccEEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHHHHHHcCCCCCccc
Q 022348 65 QSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTIF 144 (298)
Q Consensus 65 ~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~ 144 (298)
+++++|+||+||||+|+...+..+++.++++++..... .+.+....|.+.......+....
T Consensus 2 ~~~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ig~~~~~~~~~~~~~~------- 62 (220)
T COG0546 2 MMIKAILFDLDGTLVDSAEDILRAFNAALAELGLPPLD------------EEEIRQLIGLGLDELIERLLGEA------- 62 (220)
T ss_pred CCCCEEEEeCCCccccChHHHHHHHHHHHHHcCCCCCC------------HHHHHHHhcCCHHHHHHHHhccc-------
Confidence 47899999999999999999999999999999987533 34666677777665443322110
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccC
Q 022348 145 DNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEG 224 (298)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~ 224 (298)
..+...+..+.+.+.+...+.+.. ...++||+.++|..|+++|++++|+||.....+...++.+ |+..+
T Consensus 63 -----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~-gl~~~-- 131 (220)
T COG0546 63 -----DEEAAAELVERLREEFLTAYAELL---ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKAL-GLADY-- 131 (220)
T ss_pred -----cchhHHHHHHHHHHHHHHHHHhhc---cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHh-CCccc--
Confidence 011111334444455555454442 2479999999999999999999999999999999999998 99999
Q ss_pred cceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEE-EEcCCCchhHhhhcC
Q 022348 225 LDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACV-ITYTSSTAEQVRIID 294 (298)
Q Consensus 225 fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v-~~~~~~~~~~~~~~~ 294 (298)
|+.++++++....||+|..+..+++++|++|++++||||+.+|+++|++||+.+| +.||....+++.+..
T Consensus 132 F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l~VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~ 202 (220)
T COG0546 132 FDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEALMVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAG 202 (220)
T ss_pred cceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheEEECCCHHHHHHHHHcCCCEEEEECCCCCCcchhhcC
Confidence 9999998889999999999999999999998899999999999999999999998 666654445555443
No 6
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.97 E-value=6e-30 Score=210.90 Aligned_cols=196 Identities=20% Similarity=0.262 Sum_probs=152.5
Q ss_pred ccEEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHH-HhcCChhhHHHHH-HHcCCCCCccc
Q 022348 67 LQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQN-QIGGGKPKMRWYF-KEHGWPSSTIF 144 (298)
Q Consensus 67 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~g~~~~~~~ 144 (298)
+|+|+||+||||+|+...+..+|.++++++|.+... +++.. ..|....++...+ ...|.+
T Consensus 1 ~k~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~-------------~~~~~~~~g~~~~~~~~~~~~~~~~~----- 62 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGLVYRALRQAVTAAGLSPTP-------------EEVQSAWMGQSKIEAIRALLALDGAD----- 62 (220)
T ss_pred CcEEEEecCCCeeccCchHHHHHHHHHHHcCCCCCH-------------HHHHHhhcCCCHHHHHHHHHhccCCC-----
Confidence 589999999999999999999999999999876432 12222 4555555443333 332321
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc--cc
Q 022348 145 DNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME--RF 222 (298)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~--~~ 222 (298)
+. ..+.+...+.+.+...+......++||+.++|+.|+++|++++|+||+....+...++.+ ++. .+
T Consensus 63 ------~~----~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~-~l~~~~~ 131 (220)
T TIGR03351 63 ------EA----EAQAAFADFEERLAEAYDDGPPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKL-GWTVGDD 131 (220)
T ss_pred ------HH----HHHHHHHHHHHHHHHHhcccCCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHh-hhhhhcc
Confidence 11 123333444444544443345689999999999999999999999999999999999998 888 77
Q ss_pred cCcceEEeCCCCCCCCCCHHHHHHHHHHhCCC-CCcEEEEecChhhHHHHHHcCCeE-EEE-cCCCchhHhhhc
Q 022348 223 EGLDCFLAGDDVKQKKPDPSIYVTAAKRLGIS-EKDCLVVEDSVIGLQAATRAGMAC-VIT-YTSSTAEQVRII 293 (298)
Q Consensus 223 ~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~-~~~~~~vgD~~~Di~~a~~aG~~~-v~~-~~~~~~~~~~~~ 293 (298)
|+.++++++....||+|++|..+++++|+. |++|+||||+..|+++|+++||.+ +++ ++....+++...
T Consensus 132 --f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~~igD~~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~ 203 (220)
T TIGR03351 132 --VDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQSVAVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEELSRH 203 (220)
T ss_pred --CCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChhHeEEeCCCHHHHHHHHHCCCCeEEEEecCCCcHHHHhhc
Confidence 899999999999999999999999999998 799999999999999999999999 755 445566666544
No 7
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.97 E-value=3.7e-30 Score=213.03 Aligned_cols=188 Identities=23% Similarity=0.304 Sum_probs=145.3
Q ss_pred CccEEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHHHHHHcCCCCCcccC
Q 022348 66 SLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTIFD 145 (298)
Q Consensus 66 ~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~ 145 (298)
++|+|+||+||||+|+...+..+|+.+++++|.+... .+.+....|.+..........
T Consensus 11 ~~k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~------------~~~~~~~~g~~~~~~~~~~~~---------- 68 (229)
T PRK13226 11 FPRAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPIT------------LAQLRPVVSKGARAMLAVAFP---------- 68 (229)
T ss_pred cCCEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCC------------HHHHHHHhhhHHHHHHHHHhc----------
Confidence 6799999999999999999999999999999975432 224444555554433222110
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCc
Q 022348 146 NPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGL 225 (298)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~f 225 (298)
........++. +.+.+.|..... ....++||+.++|+.|+++|++++|+||+........++.+ ++..+ |
T Consensus 69 --~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~-~l~~~--f 138 (229)
T PRK13226 69 --ELDAAARDALI----PEFLQRYEALIG-TQSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQL-GWEQR--C 138 (229)
T ss_pred --cCChHHHHHHH----HHHHHHHHHhhh-hcCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-Cchhc--c
Confidence 00112222222 333344443322 23579999999999999999999999999998888889888 99887 8
Q ss_pred ceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEE-cCCC
Q 022348 226 DCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVIT-YTSS 285 (298)
Q Consensus 226 d~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~-~~~~ 285 (298)
+.++++++.+..||+|++|..+++++|++|++|+||||+.+|+++|+++|+.+|++ |+..
T Consensus 139 ~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~ 199 (229)
T PRK13226 139 AVLIGGDTLAERKPHPLPLLVAAERIGVAPTDCVYVGDDERDILAARAAGMPSVAALWGYR 199 (229)
T ss_pred cEEEecCcCCCCCCCHHHHHHHHHHhCCChhhEEEeCCCHHHHHHHHHCCCcEEEEeecCC
Confidence 99999988889999999999999999999999999999999999999999999954 5543
No 8
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.97 E-value=7.4e-30 Score=220.90 Aligned_cols=194 Identities=22% Similarity=0.304 Sum_probs=154.5
Q ss_pred CccEEEEecCCccccchh-HHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHHHHHHcCCCCCccc
Q 022348 66 SLQALIFDCDGVIIESEH-LHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTIF 144 (298)
Q Consensus 66 ~~k~viFD~DGTL~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~ 144 (298)
.+++|||||||||+|+.. .+.++|.++++++|.+... .+.+....|.+.......+.....
T Consensus 130 ~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~~------------~e~~~~~~G~~~~~~l~~ll~~~~------ 191 (381)
T PLN02575 130 GWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPPP------------AFILRRVEGMKNEQAISEVLCWSR------ 191 (381)
T ss_pred CCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCCH------------HHHHHHhcCCCHHHHHHHHhhccC------
Confidence 699999999999999986 6678999999999986533 123445667666554433322111
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccC
Q 022348 145 DNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEG 224 (298)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~ 224 (298)
... ..+.+.+.+.+.|.+... ....++||+.++|+.|+++|++++|+||+....+...++.+ ++..+
T Consensus 192 -----~~~----~~e~l~~~~~~~y~~~~~-~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~l-gL~~y-- 258 (381)
T PLN02575 192 -----DPA----ELRRMATRKEEIYQALQG-GIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSI-GIRGF-- 258 (381)
T ss_pred -----CHH----HHHHHHHHHHHHHHHHhc-cCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc-CCHHH--
Confidence 111 123444445555555542 34579999999999999999999999999999999999998 99999
Q ss_pred cceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCCCchhHh
Q 022348 225 LDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQV 290 (298)
Q Consensus 225 fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~~ 290 (298)
||.+++++++...||+|++|..+++++|+.|++|+||||+..|+++|+++||.+|++.+.....++
T Consensus 259 Fd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl~IGDS~~DIeAAk~AGm~~IgV~~~~~~~~l 324 (381)
T PLN02575 259 FSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCIVFGNSNQTVEAAHDARMKCVAVASKHPIYEL 324 (381)
T ss_pred ceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHcCCEEEEECCCCChhHh
Confidence 999999999999999999999999999999999999999999999999999999988765555443
No 9
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.97 E-value=2.9e-30 Score=211.67 Aligned_cols=190 Identities=31% Similarity=0.527 Sum_probs=148.6
Q ss_pred CccEEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHHHHHHcCCCCCcccC
Q 022348 66 SLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTIFD 145 (298)
Q Consensus 66 ~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~ 145 (298)
++++|||||||||+|++..+.++|.++++++|+.... +......|.........+.+......
T Consensus 1 ~~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~-------------~~~~~~~g~~~~~~~~~~~~~~~~~~---- 63 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISD-------------EEIRELHGGGIARIIDLLRKLAAGED---- 63 (221)
T ss_pred CCcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCH-------------HHHHHHHCCChHHHHHHHHHHhcCCc----
Confidence 4799999999999999999999999999999987543 23344456554444444433211100
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCc
Q 022348 146 NPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGL 225 (298)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~f 225 (298)
.... ....+......... .....+.||+.++|+.|+++|++++++|++....+...++.+ |+.++ |
T Consensus 64 --~~~~-------~~~~~~~~~~~~~~--~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~-gl~~~--f 129 (221)
T COG0637 64 --PADL-------AELERLLYEAEALE--LEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARL-GLLDY--F 129 (221)
T ss_pred --ccCH-------HHHHHHHHHHHHhh--hcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHc-cChhh--c
Confidence 0000 11111111111121 345689999999999999999999999999999999999998 99998 9
Q ss_pred ceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCCCc
Q 022348 226 DCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSST 286 (298)
Q Consensus 226 d~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~ 286 (298)
+.+++++++..+||+|++|..++++||+.|++|++|+|+.+++++|++|||.+|++.+.+.
T Consensus 130 ~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~CvviEDs~~Gi~Aa~aAGm~vv~v~~~~~ 190 (221)
T COG0637 130 DVIVTADDVARGKPAPDIYLLAAERLGVDPEECVVVEDSPAGIQAAKAAGMRVVGVPAGHD 190 (221)
T ss_pred chhccHHHHhcCCCCCHHHHHHHHHcCCChHHeEEEecchhHHHHHHHCCCEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999998887544
No 10
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.97 E-value=1.3e-29 Score=209.14 Aligned_cols=192 Identities=24% Similarity=0.404 Sum_probs=149.0
Q ss_pred CccEEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHHHH-HHcCCCCCccc
Q 022348 66 SLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYF-KEHGWPSSTIF 144 (298)
Q Consensus 66 ~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~g~~~~~~~ 144 (298)
++++|+||+||||+|+...+..++.++++++|.+... .+.+....|.........+ ...++.
T Consensus 6 ~~k~iiFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~------------~~~~~~~~g~~~~~~~~~~~~~~~~~----- 68 (222)
T PRK10826 6 QILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISR------------REELPDTLGLRIDQVVDLWYARQPWN----- 68 (222)
T ss_pred cCcEEEEcCCCCCCcCHHHHHHHHHHHHHHCCCCCCH------------HHHHHHhhCCCHHHHHHHHHHhcCCC-----
Confidence 6899999999999999999999999999999875432 1234445555544433322 222211
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccC
Q 022348 145 DNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEG 224 (298)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~ 224 (298)
.....++...+.+.+ ...+ .....++||+.++|..|+++|++++|+||+....+...++.+ ++..+
T Consensus 69 ------~~~~~~~~~~~~~~~----~~~~-~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~-~l~~~-- 134 (222)
T PRK10826 69 ------GPSRQEVVQRIIARV----ISLI-EETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMF-DLRDY-- 134 (222)
T ss_pred ------CCCHHHHHHHHHHHH----HHHH-hcCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhC-cchhc--
Confidence 111122222333222 2222 134579999999999999999999999999999999999998 99988
Q ss_pred cceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCCCchh
Q 022348 225 LDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAE 288 (298)
Q Consensus 225 fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~ 288 (298)
|+.++++++++.+||+|++|+.+++++|+.|++|++|||+.+|+++|+++|+++|++..+....
T Consensus 135 f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~igDs~~Di~aA~~aG~~~i~v~~~~~~~ 198 (222)
T PRK10826 135 FDALASAEKLPYSKPHPEVYLNCAAKLGVDPLTCVALEDSFNGMIAAKAARMRSIVVPAPEQQN 198 (222)
T ss_pred ccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCChhhHHHHHHcCCEEEEecCCccCc
Confidence 9999999999999999999999999999999999999999999999999999999888766543
No 11
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.97 E-value=2.8e-29 Score=211.20 Aligned_cols=190 Identities=23% Similarity=0.340 Sum_probs=140.2
Q ss_pred ccEEEEecCCccccchh-HHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHH-----------HHHH
Q 022348 67 LQALIFDCDGVIIESEH-LHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMR-----------WYFK 134 (298)
Q Consensus 67 ~k~viFD~DGTL~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----------~~~~ 134 (298)
+++|+||+||||+|+.. .+..+|.++++++|.+... +++...+|.+..... .+..
T Consensus 2 ~k~viFD~DGTLiDs~~~~~~~a~~~~~~~~g~~~~~-------------~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 68 (253)
T TIGR01422 2 IEAVIFDWAGTTVDFGSFAPTQAFVEAFAEFGVQITL-------------EEARGPMGLGKWDHIRALLKMPAVAERWRA 68 (253)
T ss_pred ceEEEEeCCCCeecCCCccHHHHHHHHHHHcCCCccH-------------HHHHHhcCccHHHHHHHHhcCHHHHHHHHH
Confidence 68999999999999864 3578999999998875322 223334444432211 1122
Q ss_pred HcCCCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHH
Q 022348 135 EHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLE 214 (298)
Q Consensus 135 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~ 214 (298)
.+|.. ...+.. +.+.+.+...+...+ .....++||+.++|+.|+++|++++|+||+....+...++
T Consensus 69 ~~~~~---------~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~ 134 (253)
T TIGR01422 69 KFGRL---------PTEADI----EAIYEAFEPLQLAKL-AEYSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAP 134 (253)
T ss_pred HhCCC---------CCHHHH----HHHHHHHHHHHHHHH-HhcCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHH
Confidence 22221 111222 223333333333332 2346899999999999999999999999999999999999
Q ss_pred HHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCC-CCcEEEEecChhhHHHHHHcCCeEEEE-cCCC
Q 022348 215 NLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGIS-EKDCLVVEDSVIGLQAATRAGMACVIT-YTSS 285 (298)
Q Consensus 215 ~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~-~~~~~~vgD~~~Di~~a~~aG~~~v~~-~~~~ 285 (298)
.+ ++..++ ||.++++++++..||+|++|..+++++|+. |++|++|||+.+|+++|+++|+.+|++ +|..
T Consensus 135 ~~-gl~~~f-~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~~g~~ 205 (253)
T TIGR01422 135 EA-ALQGYR-PDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAACVKVGDTVPDIEEGRNAGMWTVGLILSSN 205 (253)
T ss_pred HH-HhcCCC-CceEEccccCCCCCCCHHHHHHHHHHcCCCCchheEEECCcHHHHHHHHHCCCeEEEEecCCc
Confidence 98 888761 389999999999999999999999999995 999999999999999999999999955 5543
No 12
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.97 E-value=3.4e-29 Score=205.40 Aligned_cols=193 Identities=23% Similarity=0.375 Sum_probs=147.5
Q ss_pred EEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHHH-HHHcCCCCCcccCCCC
Q 022348 70 LIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWY-FKEHGWPSSTIFDNPP 148 (298)
Q Consensus 70 viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~g~~~~~~~~~~~ 148 (298)
|+||+||||+|+...+..++..+++++|.+... .+.+....|.+....... +...+..
T Consensus 1 viFD~DGTL~Ds~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~g~~~~~~~~~~~~~~~~~--------- 59 (213)
T TIGR01449 1 VLFDLDGTLVDSAPDIAAAVNMALAALGLPPAT------------LARVIGFIGNGVPVLMERVLAWAGQE--------- 59 (213)
T ss_pred CeecCCCccccCHHHHHHHHHHHHHHCCCCCCC------------HHHHHHHhcccHHHHHHHHhhccccc---------
Confidence 699999999999998899999999999875322 223444556554433222 3322211
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceE
Q 022348 149 VTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCF 228 (298)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v 228 (298)
...+ ..+.+.+.+.+.|.+.. .....++||+.++|+.|+++|++++|+||+....++..++++ ++..+ |+.+
T Consensus 60 ~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~-~l~~~--f~~~ 131 (213)
T TIGR01449 60 PDAQ----RVAELRKLFDRHYEEVA-GELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELL-GLAKY--FSVL 131 (213)
T ss_pred cChH----HHHHHHHHHHHHHHHhc-cccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc-CcHhh--CcEE
Confidence 1111 12333444444555443 234579999999999999999999999999999999999998 99988 9999
Q ss_pred EeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEE-cCCCchhHhh
Q 022348 229 LAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVIT-YTSSTAEQVR 291 (298)
Q Consensus 229 ~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~-~~~~~~~~~~ 291 (298)
+++++++..||+|++|..+++++|++|++|++|||+.+|+++|+++|+.++++ +|....+.+.
T Consensus 132 ~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~igDs~~d~~aa~~aG~~~i~v~~g~~~~~~l~ 195 (213)
T TIGR01449 132 IGGDSLAQRKPHPDPLLLAAERLGVAPQQMVYVGDSRVDIQAARAAGCPSVLLTYGYRYGEAID 195 (213)
T ss_pred EecCCCCCCCCChHHHHHHHHHcCCChhHeEEeCCCHHHHHHHHHCCCeEEEEccCCCCCcchh
Confidence 99999999999999999999999999999999999999999999999999965 4444444444
No 13
>PRK11587 putative phosphatase; Provisional
Probab=99.97 E-value=2.9e-29 Score=206.38 Aligned_cols=186 Identities=19% Similarity=0.346 Sum_probs=137.8
Q ss_pred CCccEEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHH-HhcCChhhHHHHHHHcCCCCCcc
Q 022348 65 QSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQN-QIGGGKPKMRWYFKEHGWPSSTI 143 (298)
Q Consensus 65 ~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~g~~~~~~ 143 (298)
|++|+|+||+||||+|+...+..+|.++++++|++. .++.. ..|.+.......+.. +.
T Consensus 1 M~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~---------------~~~~~~~~g~~~~~~~~~~~~-~~----- 59 (218)
T PRK11587 1 MRCKGFLFDLDGTLVDSLPAVERAWSNWADRHGIAP---------------DEVLNFIHGKQAITSLRHFMA-GA----- 59 (218)
T ss_pred CCCCEEEEcCCCCcCcCHHHHHHHHHHHHHHcCCCH---------------HHHHHHHcCCCHHHHHHHHhc-cC-----
Confidence 368999999999999999999999999999999742 12222 235444333222211 00
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCcccc
Q 022348 144 FDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFE 223 (298)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~ 223 (298)
..+ ++.+.+... ..+.... .....++||+.++|+.|+++|++++|+||+........++.. ++. +
T Consensus 60 ------~~~---~~~~~~~~~--~~~~~~~-~~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~-~l~-~- 124 (218)
T PRK11587 60 ------SEA---EIQAEFTRL--EQIEATD-TEGITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAA-GLP-A- 124 (218)
T ss_pred ------CcH---HHHHHHHHH--HHHHHhh-hcCceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhc-CCC-C-
Confidence 111 111111111 1111111 235679999999999999999999999999887777777766 773 3
Q ss_pred CcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCCCch
Q 022348 224 GLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTA 287 (298)
Q Consensus 224 ~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~~ 287 (298)
|+.+++++++...||+|++|..+++++|+.|++|+||||+..|+++|+++|+.+|++..+...
T Consensus 125 -~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~l~igDs~~di~aA~~aG~~~i~v~~~~~~ 187 (218)
T PRK11587 125 -PEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVVVEDAPAGVLSGLAAGCHVIAVNAPADT 187 (218)
T ss_pred -ccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccEEEEecchhhhHHHHHCCCEEEEECCCCch
Confidence 678888888888999999999999999999999999999999999999999999988765443
No 14
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.97 E-value=1.1e-28 Score=208.97 Aligned_cols=191 Identities=24% Similarity=0.337 Sum_probs=139.0
Q ss_pred CCccEEEEecCCccccchhH-HHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHH-H----------H
Q 022348 65 QSLQALIFDCDGVIIESEHL-HRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMR-W----------Y 132 (298)
Q Consensus 65 ~~~k~viFD~DGTL~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~----------~ 132 (298)
+++|+|+||+||||+|+... +..+|.++++++|.+... +++...+|.+..... . +
T Consensus 2 ~~~k~vIFDlDGTLiDs~~~~~~~a~~~~~~~~g~~~~~-------------~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 68 (267)
T PRK13478 2 MKIQAVIFDWAGTTVDFGSFAPTQAFVEAFAQFGVEITL-------------EEARGPMGLGKWDHIRALLKMPRVAARW 68 (267)
T ss_pred CceEEEEEcCCCCeecCCCccHHHHHHHHHHHcCCCCCH-------------HHHHHhcCCCHHHHHHHHHhcHHHHHHH
Confidence 46899999999999998643 467999999998875322 223334444432211 1 1
Q ss_pred HHHcCCCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHH
Q 022348 133 FKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILC 212 (298)
Q Consensus 133 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~ 212 (298)
...+|.+ ...+...+ +...+.+.+.+.+ .....++||+.++|+.|+++|++++|+||+....+...
T Consensus 69 ~~~~g~~---------~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~ 134 (267)
T PRK13478 69 QAVFGRL---------PTEADVDA----LYAAFEPLQIAKL-ADYATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVV 134 (267)
T ss_pred HHHhCCC---------CCHHHHHH----HHHHHHHHHHHHH-hhcCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHH
Confidence 1122211 11122222 2233333333332 23457999999999999999999999999999988889
Q ss_pred HHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCC-CCcEEEEecChhhHHHHHHcCCeEEEEcCC
Q 022348 213 LENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGIS-EKDCLVVEDSVIGLQAATRAGMACVITYTS 284 (298)
Q Consensus 213 l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~-~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~ 284 (298)
++.+ ++..++ ||.++++++++..||+|++|..+++++|+. +++|+||||+.+|+++|+++|+.+|++..+
T Consensus 135 l~~~-~l~~~~-~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~~g 205 (267)
T PRK13478 135 VPLA-AAQGYR-PDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAACVKVDDTVPGIEEGLNAGMWTVGVILS 205 (267)
T ss_pred HHHH-hhcCCC-ceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcceEEEcCcHHHHHHHHHCCCEEEEEccC
Confidence 9887 776651 489999999999999999999999999996 699999999999999999999999965443
No 15
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.97 E-value=1.3e-28 Score=208.42 Aligned_cols=201 Identities=22% Similarity=0.331 Sum_probs=150.9
Q ss_pred CCccEEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHHHHHHcCCCCCccc
Q 022348 65 QSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTIF 144 (298)
Q Consensus 65 ~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~ 144 (298)
..+|+|+|||||||+|+...+..++..+++++|.+... .+.+....|.+...+...+.... +
T Consensus 11 ~~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~------------~~~~~~~~g~~~~~~~~~~l~~~------~ 72 (272)
T PRK13223 11 RLPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPAG------------LEAVRHWVGNGAPVLVRRALAGS------I 72 (272)
T ss_pred ccCCEEEEcCCCccccCHHHHHHHHHHHHHHcCCCCCC------------HHHHHHHhChhHHHHHHHHhccc------c
Confidence 36899999999999999999999999999999976433 12344456655544332221100 0
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccC
Q 022348 145 DNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEG 224 (298)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~ 224 (298)
.....++. ..+.+.+.+.+.|... .....++||+.++|+.|+++|++++|+||+....+...++.+ ++..+
T Consensus 73 ~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~-~i~~~-- 143 (272)
T PRK13223 73 DHDGVDDE----LAEQALALFMEAYADS--HELTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQM-KIGRY-- 143 (272)
T ss_pred cccCCCHH----HHHHHHHHHHHHHHhc--CcCCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHc-CcHhh--
Confidence 00111111 2233334444444432 123578999999999999999999999999998888899887 99888
Q ss_pred cceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEE-cCCCchhHhhh
Q 022348 225 LDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVIT-YTSSTAEQVRI 292 (298)
Q Consensus 225 fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~-~~~~~~~~~~~ 292 (298)
|+.++++++.+..||+|++|+.+++++|+.+++|++|||+.+|+++|+++|+.++++ +|.....++.+
T Consensus 144 f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l~IGD~~~Di~aA~~aGi~~i~v~~G~~~~~~l~~ 212 (272)
T PRK13223 144 FRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSLFVGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAE 212 (272)
T ss_pred CeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCchhhhh
Confidence 899999999999999999999999999999999999999999999999999999855 55555554443
No 16
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.97 E-value=1.9e-28 Score=199.74 Aligned_cols=185 Identities=28% Similarity=0.463 Sum_probs=143.6
Q ss_pred EEEecCCccccchhHHHHHHHHHHhh-cCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHHHHHHcCCCCCcccCCCC
Q 022348 70 LIFDCDGVIIESEHLHRQAYNDAFSH-FNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTIFDNPP 148 (298)
Q Consensus 70 viFD~DGTL~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~ 148 (298)
|+||+||||+|+...+.+++++++++ ++..... .+.+....|...... +...|.+
T Consensus 1 iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~g~~~~~~---~~~~~~~--------- 56 (205)
T TIGR01454 1 VVFDLDGVLVDSFAVMREAFAIAYREVVGDGPAP------------FEEYRRHLGRYFPDI---MRIMGLP--------- 56 (205)
T ss_pred CeecCcCccccCHHHHHHHHHHHHHHhcCCCCCC------------HHHHHHHhCccHHHH---HHHcCCC---------
Confidence 68999999999999999999999987 4654322 234444556544333 3333321
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceE
Q 022348 149 VTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCF 228 (298)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v 228 (298)
... .+. .....+. . .....++||+.++|+.|+++|++++|+||+....+...++.+ ++..+ |+.+
T Consensus 57 --~~~----~~~---~~~~~~~-~--~~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~-~l~~~--f~~i 121 (205)
T TIGR01454 57 --LEM----EEP---FVRESYR-L--AGEVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEAL-GLLPL--FDHV 121 (205)
T ss_pred --HHH----HHH---HHHHHHH-h--hcccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHc-CChhh--eeeE
Confidence 000 011 1111221 1 235689999999999999999999999999999899999988 99888 8999
Q ss_pred EeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEE-EEcCCCchhHhhhc
Q 022348 229 LAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACV-ITYTSSTAEQVRII 293 (298)
Q Consensus 229 ~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v-~~~~~~~~~~~~~~ 293 (298)
+++++.+.+||+|++|..+++++|+++++|+||||+.+|+++|+++|+++| +.||....+++...
T Consensus 122 ~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l~igD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~ 187 (205)
T TIGR01454 122 IGSDEVPRPKPAPDIVREALRLLDVPPEDAVMVGDAVTDLASARAAGTATVAALWGEGDAGELLAA 187 (205)
T ss_pred EecCcCCCCCCChHHHHHHHHHcCCChhheEEEcCCHHHHHHHHHcCCeEEEEEecCCChhhhhhc
Confidence 999998899999999999999999999999999999999999999999998 66777677666543
No 17
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.96 E-value=2e-28 Score=196.42 Aligned_cols=184 Identities=29% Similarity=0.491 Sum_probs=140.6
Q ss_pred ccEEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHH-HHHHHcCCCCCcccC
Q 022348 67 LQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMR-WYFKEHGWPSSTIFD 145 (298)
Q Consensus 67 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~g~~~~~~~~ 145 (298)
+++|+||+||||+|+...+..++.++++++|.+.. . +......|.+..... ..+.+.+..
T Consensus 1 ~~~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~----------~---~~~~~~~g~~~~~~~~~~~~~~~~~------ 61 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPLHAQAWKHLADKYGIEFD----------K---QYNTSLGGLSREDILRAILKLRKPG------ 61 (185)
T ss_pred CCeEEEcCCCcccCChHHHHHHHHHHHHHcCCCCC----------H---HHHHHcCCCCHHHHHHHHHHhcCCC------
Confidence 58999999999999999999999999999887521 1 122223444433332 233332211
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCc
Q 022348 146 NPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGL 225 (298)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~f 225 (298)
...+. ...+.+.+.+.+.+.+......++||+.++|+.|+++|++++++||+ ..++..++.+ ++..+ |
T Consensus 62 ---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~-~l~~~--f 129 (185)
T TIGR02009 62 ---LSLET----IHQLAERKNELYRELLRLTGAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKL-GLTDY--F 129 (185)
T ss_pred ---CCHHH----HHHHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHc-ChHHH--C
Confidence 11122 22333444445555443345689999999999999999999999998 5578888887 99988 9
Q ss_pred ceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEE
Q 022348 226 DCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVIT 281 (298)
Q Consensus 226 d~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~ 281 (298)
+.++++++.+..||+|++|..+++++|++|+++++|||+..|+++|+++|+++|.+
T Consensus 130 ~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~IgD~~~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 130 DAIVDADEVKEGKPHPETFLLAAELLGVSPNECVVFEDALAGVQAARAAGMFAVAV 185 (185)
T ss_pred CEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeEEEeCcHhhHHHHHHCCCeEeeC
Confidence 99999999999999999999999999999999999999999999999999998853
No 18
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.96 E-value=2.4e-28 Score=195.97 Aligned_cols=183 Identities=27% Similarity=0.493 Sum_probs=137.9
Q ss_pred EEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhH-HHHHHHcCCCCCcccCCC
Q 022348 69 ALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKM-RWYFKEHGWPSSTIFDNP 147 (298)
Q Consensus 69 ~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~g~~~~~~~~~~ 147 (298)
+|+||+||||+|+...+..+|.++++++|++... +......|.+.... ...+.+.|.+
T Consensus 1 ~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~-------------~~~~~~~g~~~~~~~~~~~~~~~~~-------- 59 (185)
T TIGR01990 1 AVIFDLDGVITDTAEYHYLAWKALADELGIPFDE-------------EFNESLKGVSREDSLERILDLGGKK-------- 59 (185)
T ss_pred CeEEcCCCccccChHHHHHHHHHHHHHcCCCCCH-------------HHHHHhcCCChHHHHHHHHHhcCCC--------
Confidence 5899999999999999999999999999875321 12233445444433 3344444432
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcce
Q 022348 148 PVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDC 227 (298)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~ 227 (298)
...+...++.+.+.+.+.+.+... ....++||+.++|+.|+++|++++|+||+.. ....++.+ ++..+ ||.
T Consensus 60 -~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~-~l~~~--f~~ 130 (185)
T TIGR01990 60 -YSEEEKEELAERKNDYYVELLKEL---TPADVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKL-GLIDY--FDA 130 (185)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHhc---CCcccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhc-CcHhh--CcE
Confidence 112222233333333332222221 2347899999999999999999999998754 45678887 99988 999
Q ss_pred EEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEE
Q 022348 228 FLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVIT 281 (298)
Q Consensus 228 v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~ 281 (298)
++++++++..||+|++|..+++++|++|++|++|||+.+|+++|+++|+.+|.+
T Consensus 131 ~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~vgD~~~di~aA~~aG~~~i~v 184 (185)
T TIGR01990 131 IVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIGIEDAQAGIEAIKAAGMFAVGV 184 (185)
T ss_pred EEehhhcCCCCCChHHHHHHHHHcCCCHHHeEEEecCHHHHHHHHHcCCEEEec
Confidence 999999999999999999999999999999999999999999999999999865
No 19
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.96 E-value=1.6e-28 Score=199.12 Aligned_cols=106 Identities=23% Similarity=0.388 Sum_probs=100.3
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCc
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKD 257 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~ 257 (298)
..++||+.++|+.|+++|++++|+||+....+...++.+ |+..+ ||.++++++++..||+|++|..+++++|+.|++
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~-gl~~~--fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~ 167 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHA-GLDDP--FDAVLSADAVRAYKPAPQVYQLALEALGVPPDE 167 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHC-CChhh--hheeEehhhcCCCCCCHHHHHHHHHHhCCChhh
Confidence 478999999999999999999999999999999999998 99888 999999999999999999999999999999999
Q ss_pred EEEEecChhhHHHHHHcCCeEEEEcCCCc
Q 022348 258 CLVVEDSVIGLQAATRAGMACVITYTSST 286 (298)
Q Consensus 258 ~~~vgD~~~Di~~a~~aG~~~v~~~~~~~ 286 (298)
|+||||+.+|+++|+++|+.+|+++....
T Consensus 168 ~~~vgD~~~Di~~A~~~G~~~i~v~r~~~ 196 (198)
T TIGR01428 168 VLFVASNPWDLGGAKKFGFKTAWVNRPGE 196 (198)
T ss_pred EEEEeCCHHHHHHHHHCCCcEEEecCCCC
Confidence 99999999999999999999998876543
No 20
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.96 E-value=6.3e-28 Score=194.04 Aligned_cols=183 Identities=27% Similarity=0.473 Sum_probs=140.3
Q ss_pred CCccEEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHH-HHHHcCCCCCcc
Q 022348 65 QSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRW-YFKEHGWPSSTI 143 (298)
Q Consensus 65 ~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~g~~~~~~ 143 (298)
.++++|+||+||||+|+...+.++|.++++++|.+... +.+....|........ .+.+.+..
T Consensus 3 ~~~~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~-------------~~~~~~~g~~~~~~~~~~~~~~~~~---- 65 (188)
T PRK10725 3 DRYAGLIFDMDGTILDTEPTHRKAWREVLGRYGLQFDE-------------QAMVALNGSPTWRIAQAIIELNQAD---- 65 (188)
T ss_pred CcceEEEEcCCCcCccCHHHHHHHHHHHHHHcCCCCCH-------------HHHHHhcCCCHHHHHHHHHHHhCCC----
Confidence 36899999999999999999999999999999875321 1334445555444333 33323211
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCcccc
Q 022348 144 FDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFE 223 (298)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~ 223 (298)
...++ +...+...+.... .....++|+ .++|..|++. ++++|+||+....+...++.+ ++..+
T Consensus 66 --------~~~~~----~~~~~~~~~~~~~-~~~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~-~l~~~- 128 (188)
T PRK10725 66 --------LDPHA----LAREKTEAVKSML-LDSVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHL-GLRRY- 128 (188)
T ss_pred --------CCHHH----HHHHHHHHHHHHH-hccCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhC-CcHhH-
Confidence 01111 2222223333332 234567886 5899999876 899999999999999999998 99988
Q ss_pred CcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEc
Q 022348 224 GLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITY 282 (298)
Q Consensus 224 ~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~ 282 (298)
||.++++++.+..||+|++|..+++++|+.|++|++|||+.+|+++|+++|+++|.+.
T Consensus 129 -fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~igDs~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 129 -FDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVVFEDADFGIQAARAAGMDAVDVR 186 (188)
T ss_pred -ceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeEEEeccHhhHHHHHHCCCEEEeec
Confidence 9999999999999999999999999999999999999999999999999999998764
No 21
>PLN02940 riboflavin kinase
Probab=99.96 E-value=4.5e-28 Score=213.77 Aligned_cols=187 Identities=22% Similarity=0.397 Sum_probs=147.1
Q ss_pred CccEEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhH-HHHHHHcCCCCCccc
Q 022348 66 SLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKM-RWYFKEHGWPSSTIF 144 (298)
Q Consensus 66 ~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~g~~~~~~~ 144 (298)
.+++|+||+||||+|+...+..+|..+++++|..... +++....|...... ..++.+.+++
T Consensus 10 ~ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G~~~~~-------------~~~~~~~G~~~~~~~~~~~~~~~~~----- 71 (382)
T PLN02940 10 LVSHVILDLDGTLLNTDGIVSDVLKAFLVKYGKQWDG-------------REAQKIVGKTPLEAAATVVEDYGLP----- 71 (382)
T ss_pred cCCEEEECCcCcCCcCHHHHHHHHHHHHHHcCCCCCH-------------HHHHHhcCCCHHHHHHHHHHHhCCC-----
Confidence 5999999999999999999999999999999875322 23445666665543 3344555432
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccC
Q 022348 145 DNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEG 224 (298)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~ 224 (298)
....++...+. +.+.... ....++||+.++|+.|+++|++++|+||+....+...++...++..+
T Consensus 72 -------~~~~~~~~~~~----~~~~~~~--~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~-- 136 (382)
T PLN02940 72 -------CSTDEFNSEIT----PLLSEQW--CNIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKES-- 136 (382)
T ss_pred -------CCHHHHHHHHH----HHHHHHH--ccCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhh--
Confidence 11222222222 3233222 24579999999999999999999999999998888888733389888
Q ss_pred cceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCCC
Q 022348 225 LDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSS 285 (298)
Q Consensus 225 fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~ 285 (298)
||.++++++++..||+|++|..+++++|++|++|++|||+..|+++|+++|+.+|++..+.
T Consensus 137 Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~l~VGDs~~Di~aA~~aGi~~I~v~~g~ 197 (382)
T PLN02940 137 FSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNCLVIEDSLPGVMAGKAAGMEVIAVPSIP 197 (382)
T ss_pred CCEEEehhhcCCCCCCHHHHHHHHHHcCCChhHEEEEeCCHHHHHHHHHcCCEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999999999775543
No 22
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.96 E-value=5.7e-28 Score=196.65 Aligned_cols=187 Identities=22% Similarity=0.366 Sum_probs=133.2
Q ss_pred cEEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHH------h----cCChhh-----HHHH
Q 022348 68 QALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQ------I----GGGKPK-----MRWY 132 (298)
Q Consensus 68 k~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~----g~~~~~-----~~~~ 132 (298)
|+|+||+||||+|+...+..++.++++++|++...+. ....+.+.+... + |..... +...
T Consensus 1 k~viFDlDGTL~d~~~~~~~a~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 75 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEVYCEIARKYGVEVSPDE-----LEQAFRRAFKAMSEAFPNFGFSSGLTPQQWWQKLVRDT 75 (203)
T ss_pred CeEEEecCCceeeeCCCHHHHHHHHHHHhCCCCCHHH-----HHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHH
Confidence 5899999999999999899999999999998643210 000111111111 1 112111 1122
Q ss_pred HHHcCCCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHH
Q 022348 133 FKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILC 212 (298)
Q Consensus 133 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~ 212 (298)
+...|. ...+ .+.+.+.+.+..+.....+.++||+.++|+.|+++|++++|+||+... ....
T Consensus 76 ~~~~~~----------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~ 137 (203)
T TIGR02252 76 FGRAGV----------PDPE-------SFEKIFEELYSYFATPEPWQVYPDAIKLLKDLRERGLILGVISNFDSR-LRGL 137 (203)
T ss_pred HHhcCC----------CCch-------hHHHHHHHHHHHhcCCCcceeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHH
Confidence 222221 0111 112222222322222234578999999999999999999999998765 5778
Q ss_pred HHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecCh-hhHHHHHHcCCeEEE
Q 022348 213 LENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSV-IGLQAATRAGMACVI 280 (298)
Q Consensus 213 l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~-~Di~~a~~aG~~~v~ 280 (298)
++.+ ++..+ ||.++++++.+..||+|++|..+++++|++|++|+||||+. +|+++|+++|+.+||
T Consensus 138 l~~~-~l~~~--fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 138 LEAL-GLLEY--FDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALHIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred HHHC-CcHHh--cceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEEECCCchHHHHHHHHcCCeeeC
Confidence 8887 99888 99999999999999999999999999999999999999998 899999999999874
No 23
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.96 E-value=2e-27 Score=200.37 Aligned_cols=191 Identities=17% Similarity=0.216 Sum_probs=143.3
Q ss_pred CCccEEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHHHHHHcCCCCCccc
Q 022348 65 QSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTIF 144 (298)
Q Consensus 65 ~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~ 144 (298)
..+++|+||+||||+|+...+..++.++++++|.+... .+.+....|.... ..+...+.+
T Consensus 60 ~~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~------------~~~~~~~~g~~~~---~i~~~~~~~----- 119 (273)
T PRK13225 60 QTLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPID------------ERDYAQLRQWSSR---TIVRRAGLS----- 119 (273)
T ss_pred hhcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCC------------HHHHHHHhCccHH---HHHHHcCCC-----
Confidence 36999999999999999999999999999999976433 1223334443332 233333321
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccC
Q 022348 145 DNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEG 224 (298)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~ 224 (298)
.....++. +.+.+.+... .....++||+.++|+.|+++|++++|+||+....+...++.+ |+..+
T Consensus 120 ------~~~~~~~~----~~~~~~~~~~--~~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~-gl~~~-- 184 (273)
T PRK13225 120 ------PWQQARLL----QRVQRQLGDC--LPALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQ-GLRSL-- 184 (273)
T ss_pred ------HHHHHHHH----HHHHHHHHhh--cccCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc-CChhh--
Confidence 11222222 2233333333 234679999999999999999999999999999999999998 99988
Q ss_pred cceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEE-cCCCchhHhhhc
Q 022348 225 LDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVIT-YTSSTAEQVRII 293 (298)
Q Consensus 225 fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~-~~~~~~~~~~~~ 293 (298)
|+.++++++. +++++.|..+++++|+.|++|+||||+.+|+++|+++|+.+|++ ++.....++...
T Consensus 185 F~~vi~~~~~---~~k~~~~~~~l~~~~~~p~~~l~IGDs~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~ 251 (273)
T PRK13225 185 FSVVQAGTPI---LSKRRALSQLVAREGWQPAAVMYVGDETRDVEAARQVGLIAVAVTWGFNDRQSLVAA 251 (273)
T ss_pred eEEEEecCCC---CCCHHHHHHHHHHhCcChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCHHHHHHC
Confidence 8988877654 24578999999999999999999999999999999999999955 555555555443
No 24
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.96 E-value=4.1e-27 Score=194.85 Aligned_cols=191 Identities=25% Similarity=0.378 Sum_probs=147.8
Q ss_pred CCccEEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHHH-HHHcCCCCCcc
Q 022348 65 QSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWY-FKEHGWPSSTI 143 (298)
Q Consensus 65 ~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~g~~~~~~ 143 (298)
+++++|+||+||||+|+...+..++..++++++.+... .+.+....|.+...+... +...+.
T Consensus 4 ~~~~~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~g~~~~~~~~~~~~~~~~----- 66 (226)
T PRK13222 4 MDIRAVAFDLDGTLVDSAPDLAAAVNAALAALGLPPAG------------EERVRTWVGNGADVLVERALTWAGR----- 66 (226)
T ss_pred CcCcEEEEcCCcccccCHHHHHHHHHHHHHHCCCCCCC------------HHHHHHHhCccHHHHHHHHHhhccC-----
Confidence 46899999999999999988889999999998876433 223444556555443322 222110
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCcccc
Q 022348 144 FDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFE 223 (298)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~ 223 (298)
....+. .+.+.+.+.+.|.... .....++||+.++++.|++.|++++++||+....++..++.+ ++..+
T Consensus 67 ----~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~-~l~~~- 135 (226)
T PRK13222 67 ----EPDEEL----LEKLRELFDRHYAENV-AGGSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEAL-GIADY- 135 (226)
T ss_pred ----CccHHH----HHHHHHHHHHHHHHhc-cccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc-CCccC-
Confidence 111122 2333334444454433 124579999999999999999999999999999899999988 99887
Q ss_pred CcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCC
Q 022348 224 GLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 284 (298)
Q Consensus 224 ~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~ 284 (298)
|+.++++++++..||+|++|+.+++++++++++|++|||+.+|+++|+++|+.++++..+
T Consensus 136 -f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~igD~~~Di~~a~~~g~~~i~v~~g 195 (226)
T PRK13222 136 -FSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEMLFVGDSRNDIQAARAAGCPSVGVTYG 195 (226)
T ss_pred -ccEEEcCCCCCCCCcChHHHHHHHHHcCCChhheEEECCCHHHHHHHHHCCCcEEEECcC
Confidence 899999999889999999999999999999999999999999999999999999976543
No 25
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.96 E-value=1.5e-27 Score=196.72 Aligned_cols=107 Identities=24% Similarity=0.440 Sum_probs=99.7
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCC
Q 022348 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEK 256 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~ 256 (298)
.+.++||+.++|+.|+++|++++|+||+....+...++.+ ++..+ ||.++++++.+..||+|++|..+++++|++++
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~-~l~~~--f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~ 168 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERL-GVRDF--FDAVITSEEEGVEKPHPKIFYAALKRLGVKPE 168 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhC-ChHHh--ccEEEEeccCCCCCCCHHHHHHHHHHcCCChh
Confidence 3579999999999999999999999999988889999998 99988 99999999999999999999999999999999
Q ss_pred cEEEEecCh-hhHHHHHHcCCeEEEEcCCCc
Q 022348 257 DCLVVEDSV-IGLQAATRAGMACVITYTSST 286 (298)
Q Consensus 257 ~~~~vgD~~-~Di~~a~~aG~~~v~~~~~~~ 286 (298)
+|+||||+. +|+.+|+++|+.+|++..+..
T Consensus 169 ~~~~igDs~~~di~~A~~aG~~~i~~~~~~~ 199 (221)
T TIGR02253 169 EAVMVGDRLDKDIKGAKNLGMKTVWINQGKS 199 (221)
T ss_pred hEEEECCChHHHHHHHHHCCCEEEEECCCCC
Confidence 999999998 899999999999998765543
No 26
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.96 E-value=2.2e-27 Score=195.74 Aligned_cols=182 Identities=25% Similarity=0.450 Sum_probs=137.4
Q ss_pred CccEEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHH-HHHHcCCCCCccc
Q 022348 66 SLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRW-YFKEHGWPSSTIF 144 (298)
Q Consensus 66 ~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~g~~~~~~~ 144 (298)
++++|+||+||||+|+...+.++|.++++++|++... . +.+....|.....+.. ++.++|.+.
T Consensus 3 ~~~~viFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~---------~---~~~~~~~g~~~~~~~~~~~~~~~~~~---- 66 (221)
T PRK10563 3 QIEAVFFDCDGTLVDSEVICSRAYVTMFAEFGITLSL---------E---EVFKRFKGVKLYEIIDIISKEHGVTL---- 66 (221)
T ss_pred CCCEEEECCCCCCCCChHHHHHHHHHHHHHcCCCCCH---------H---HHHHHhcCCCHHHHHHHHHHHhCCCC----
Confidence 6899999999999999999899999999999975322 1 1122233444433333 333444321
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccC
Q 022348 145 DNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEG 224 (298)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~ 224 (298)
...+ +.+.+.+.+.... .....++||+.++|+.|+ ++++|+||+....+...++.+ ++..+
T Consensus 67 --------~~~~----~~~~~~~~~~~~~-~~~~~~~~gv~~~L~~L~---~~~~ivTn~~~~~~~~~l~~~-~l~~~-- 127 (221)
T PRK10563 67 --------AKAE----LEPVYRAEVARLF-DSELEPIAGANALLESIT---VPMCVVSNGPVSKMQHSLGKT-GMLHY-- 127 (221)
T ss_pred --------CHHH----HHHHHHHHHHHHH-HccCCcCCCHHHHHHHcC---CCEEEEeCCcHHHHHHHHHhc-ChHHh--
Confidence 1112 2222222222221 234689999999999993 899999999988899999988 99988
Q ss_pred cc-eEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEc
Q 022348 225 LD-CFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITY 282 (298)
Q Consensus 225 fd-~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~ 282 (298)
|+ .++++++++..||+|++|..+++++|+.|++|+||||+..|+++|+++|+.++++.
T Consensus 128 F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l~igDs~~di~aA~~aG~~~i~~~ 186 (221)
T PRK10563 128 FPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENCILVDDSSAGAQSGIAAGMEVFYFC 186 (221)
T ss_pred CcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHeEEEeCcHhhHHHHHHCCCEEEEEC
Confidence 85 68888888999999999999999999999999999999999999999999998664
No 27
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.96 E-value=3.1e-27 Score=194.54 Aligned_cols=108 Identities=21% Similarity=0.324 Sum_probs=98.7
Q ss_pred CCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCC
Q 022348 176 GTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISE 255 (298)
Q Consensus 176 ~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~ 255 (298)
....++||+.++|+.|+++|++++|+||+....+...++.+ ++..+ ||.++++++++..||+|++|..+++++|++|
T Consensus 90 ~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~-~l~~~--fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p 166 (224)
T PRK14988 90 PRAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHT-GLDAH--LDLLLSTHTFGYPKEDQRLWQAVAEHTGLKA 166 (224)
T ss_pred ccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHC-CcHHH--CCEEEEeeeCCCCCCCHHHHHHHHHHcCCCh
Confidence 34689999999999999999999999999999899889887 99988 9999999999999999999999999999999
Q ss_pred CcEEEEecChhhHHHHHHcCCeE-EEEcCCCc
Q 022348 256 KDCLVVEDSVIGLQAATRAGMAC-VITYTSST 286 (298)
Q Consensus 256 ~~~~~vgD~~~Di~~a~~aG~~~-v~~~~~~~ 286 (298)
++|+||||+..|+++|+++||.+ +.+.++..
T Consensus 167 ~~~l~igDs~~di~aA~~aG~~~~~~v~~~~~ 198 (224)
T PRK14988 167 ERTLFIDDSEPILDAAAQFGIRYCLGVTNPDS 198 (224)
T ss_pred HHEEEEcCCHHHHHHHHHcCCeEEEEEeCCCC
Confidence 99999999999999999999985 45555443
No 28
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.96 E-value=1.1e-26 Score=227.25 Aligned_cols=204 Identities=29% Similarity=0.454 Sum_probs=155.9
Q ss_pred CCcCCccEEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHHHH-HHcCCCC
Q 022348 62 ASSQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYF-KEHGWPS 140 (298)
Q Consensus 62 ~~~~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~g~~~ 140 (298)
..+.++++|+|||||||+|+...+.++|.++++++|++... +++....|.+...+...+ ...+++
T Consensus 70 ~~~~~ikaVIFDlDGTLiDS~~~~~~a~~~~~~~~G~~it~-------------e~~~~~~G~~~~~~~~~~~~~~~l~- 135 (1057)
T PLN02919 70 EEWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTV-------------EDFVPFMGTGEANFLGGVASVKGVK- 135 (1057)
T ss_pred CcCCCCCEEEECCCCCeEeChHHHHHHHHHHHHHcCCCCCH-------------HHHHHHhCCCHHHHHHHHHHhcCCC-
Confidence 45678999999999999999999999999999999875321 234445666555443332 222221
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc
Q 022348 141 STIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (298)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~ 220 (298)
+....+..+.+.+.+.+.+.. .....++||+.++|++|+++|++++|+||.....++..++.+ ++.
T Consensus 136 ----------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~-gl~ 201 (1057)
T PLN02919 136 ----------GFDPDAAKKRFFEIYLEKYAK---PNSGIGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAA-GLP 201 (1057)
T ss_pred ----------CCCHHHHHHHHHHHHHHHhhh---cccCccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHc-CCC
Confidence 001112222222322222222 122347999999999999999999999999999999999998 885
Q ss_pred -cccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCCCchhHhhhcCC
Q 022348 221 -RFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQVRIIDP 295 (298)
Q Consensus 221 -~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~~~~~~~ 295 (298)
.+ ||.++++++++..||+|++|..+++++|+.|++|+||||+..|+++|+++||.+|++......+++...++
T Consensus 202 ~~~--Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~IgDs~~Di~AA~~aGm~~I~v~~~~~~~~L~~~~a 275 (1057)
T PLN02919 202 LSM--FDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVVIEDALAGVQAARAAGMRCIAVTTTLSEEILKDAGP 275 (1057)
T ss_pred hhH--CCEEEECcccccCCCCHHHHHHHHHHcCcCcccEEEEcCCHHHHHHHHHcCCEEEEECCCCCHHHHhhCCC
Confidence 67 89999999999999999999999999999999999999999999999999999998877767777765553
No 29
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.95 E-value=1.4e-26 Score=183.74 Aligned_cols=174 Identities=26% Similarity=0.481 Sum_probs=134.3
Q ss_pred EEEecCCccccchhHHHHHHHH-HHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhH-HHHHHHcCCCCCcccCCC
Q 022348 70 LIFDCDGVIIESEHLHRQAYND-AFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKM-RWYFKEHGWPSSTIFDNP 147 (298)
Q Consensus 70 viFD~DGTL~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~g~~~~~~~~~~ 147 (298)
|+||+||||+|+...+.+++.. +.+.++.+. ..+.+....+...... ..++...+..
T Consensus 1 iifD~dgtL~d~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 59 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPAIFRALQRLALEEFGLEI-------------SAEELRELFGKSYEEALERLLERFGID-------- 59 (176)
T ss_dssp EEEESBTTTEEHHHHHHHHHHHHHHHHTTHHH-------------HHHHHHHHTTSHHHHHHHHHHHHHHHH--------
T ss_pred cEEECCCCcEeCHHHHHHHHHHHHHHHhCCCC-------------CHHHHHHHhCCCHHHHHHHhhhccchh--------
Confidence 7999999999999887788877 466676531 1223333443333332 2222222110
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcce
Q 022348 148 PVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDC 227 (298)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~ 227 (298)
.....+.+.+........++||+.++|+.|+++|++++++||+....+...++.+ ++..+ |+.
T Consensus 60 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~-~~~~~--f~~ 122 (176)
T PF13419_consen 60 --------------PEEIQELFREYNLESKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERL-GLDDY--FDE 122 (176)
T ss_dssp --------------HHHHHHHHHHHHHHGGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHT-THGGG--CSE
T ss_pred --------------HHHHHHHhhhhhhhhccchhhhhhhhhhhcccccceeEEeecCCccccccccccc-ccccc--ccc
Confidence 1112222333222345689999999999999999999999999999999999998 99988 999
Q ss_pred EEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEE
Q 022348 228 FLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVIT 281 (298)
Q Consensus 228 v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~ 281 (298)
++++++.+..||++++|+.+++++|+.|++|+||||+..|+++|+++||.+|++
T Consensus 123 i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~~vgD~~~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 123 IISSDDVGSRKPDPDAYRRALEKLGIPPEEILFVGDSPSDVEAAKEAGIKTIWV 176 (176)
T ss_dssp EEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEEEEESSHHHHHHHHHTTSEEEEE
T ss_pred ccccchhhhhhhHHHHHHHHHHHcCCCcceEEEEeCCHHHHHHHHHcCCeEEeC
Confidence 999999999999999999999999999999999999999999999999999875
No 30
>PRK09449 dUMP phosphatase; Provisional
Probab=99.95 E-value=1.2e-26 Score=191.80 Aligned_cols=101 Identities=21% Similarity=0.396 Sum_probs=94.3
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCC-C
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISE-K 256 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~-~ 256 (298)
..++||+.++|+.|+ +|++++|+||+....+...++.+ ++..+ ||.++++++.+..||+|++|..+++++|+.+ +
T Consensus 94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~-~l~~~--fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~ 169 (224)
T PRK09449 94 CTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERT-GLRDY--FDLLVISEQVGVAKPDVAIFDYALEQMGNPDRS 169 (224)
T ss_pred CccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhC-ChHHH--cCEEEEECccCCCCCCHHHHHHHHHHcCCCCcc
Confidence 579999999999999 57999999999999888899998 99988 9999999999999999999999999999865 7
Q ss_pred cEEEEecCh-hhHHHHHHcCCeEEEEc
Q 022348 257 DCLVVEDSV-IGLQAATRAGMACVITY 282 (298)
Q Consensus 257 ~~~~vgD~~-~Di~~a~~aG~~~v~~~ 282 (298)
+|+||||+. +|+++|+++|+.++++.
T Consensus 170 ~~~~vgD~~~~Di~~A~~aG~~~i~~~ 196 (224)
T PRK09449 170 RVLMVGDNLHSDILGGINAGIDTCWLN 196 (224)
T ss_pred cEEEEcCCcHHHHHHHHHCCCcEEEEC
Confidence 999999998 69999999999999875
No 31
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.95 E-value=3.6e-26 Score=187.14 Aligned_cols=106 Identities=21% Similarity=0.341 Sum_probs=92.3
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEeCCChhh--HHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCC
Q 022348 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSS--VILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGIS 254 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~--~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~ 254 (298)
...++||+.++|+.|+++|++++|+||+.... ....+... ++..+ ||.++++++.+..||+|++|..+++++|++
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~-~l~~~--fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~ 168 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPG-DIMAL--FDAVVESCLEGLRKPDPRIYQLMLERLGVA 168 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhh-hhHhh--CCEEEEeeecCCCCCCHHHHHHHHHHcCCC
Confidence 46799999999999999999999999987543 22233334 67777 899999999999999999999999999999
Q ss_pred CCcEEEEecChhhHHHHHHcCCeEEEEcCCC
Q 022348 255 EKDCLVVEDSVIGLQAATRAGMACVITYTSS 285 (298)
Q Consensus 255 ~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~ 285 (298)
|++|+||||+..|+++|+++|+.+|++.+..
T Consensus 169 ~~~~l~i~D~~~di~aA~~aG~~~i~v~~~~ 199 (211)
T TIGR02247 169 PEECVFLDDLGSNLKPAAALGITTIKVSDEE 199 (211)
T ss_pred HHHeEEEcCCHHHHHHHHHcCCEEEEECCHH
Confidence 9999999999999999999999999876543
No 32
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.95 E-value=4.7e-26 Score=188.21 Aligned_cols=182 Identities=19% Similarity=0.344 Sum_probs=134.0
Q ss_pred ccEEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHH-------HhcCCh---hh-----HHH
Q 022348 67 LQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQN-------QIGGGK---PK-----MRW 131 (298)
Q Consensus 67 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~---~~-----~~~ 131 (298)
+|+|+||+||||+|+......++.++++++|+.... .....+.. .+..+. .. +..
T Consensus 1 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAAEALALRLLFEDQGIPLTE----------DMFAQYKEINQGLWRAYEEGKITKDEVVNTRFSA 70 (224)
T ss_pred CCEEEEcCcCcccccchHHHHHHHHHHHHhCCCccH----------HHHHHHHHHhHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 589999999999999998888999999888875321 11111110 000000 00 011
Q ss_pred HHHHcCCCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHH
Q 022348 132 YFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVIL 211 (298)
Q Consensus 132 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~ 211 (298)
.+.+.+.+ .. .+.+...|.... .....++||+.++|+.|+++ ++++|+||+....+..
T Consensus 71 ~~~~~~~~------------~~--------~~~~~~~~~~~~-~~~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~ 128 (224)
T TIGR02254 71 LLKEYNTE------------AD--------EALLNQKYLRFL-EEGHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYK 128 (224)
T ss_pred HHHHhCCC------------Cc--------HHHHHHHHHHHH-hccCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHH
Confidence 11111110 00 001122233322 12357999999999999999 9999999999998999
Q ss_pred HHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHh-CCCCCcEEEEecCh-hhHHHHHHcCCeEEEEcC
Q 022348 212 CLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRL-GISEKDCLVVEDSV-IGLQAATRAGMACVITYT 283 (298)
Q Consensus 212 ~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l-gi~~~~~~~vgD~~-~Di~~a~~aG~~~v~~~~ 283 (298)
.++.+ ++..+ ||.++++++.+..||+|++|..+++++ |+.|++|+||||+. +|+++|+++|++++++..
T Consensus 129 ~l~~~-~l~~~--fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~igD~~~~di~~A~~~G~~~i~~~~ 199 (224)
T TIGR02254 129 RLRKS-GLFPF--FDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVLMIGDSLTADIKGGQNAGLDTCWMNP 199 (224)
T ss_pred HHHHC-CcHhh--cCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchheEEECCCcHHHHHHHHHCCCcEEEECC
Confidence 99998 99988 999999999999999999999999999 99999999999998 799999999999997643
No 33
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.94 E-value=1.1e-25 Score=187.34 Aligned_cols=191 Identities=14% Similarity=0.200 Sum_probs=131.6
Q ss_pred CCccEEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCC------------hhhHHHH
Q 022348 65 QSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGG------------KPKMRWY 132 (298)
Q Consensus 65 ~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------------~~~~~~~ 132 (298)
.++|+|+||+||||+|+...+..+++++++.++...+.. ..+....++.+...++.. ...+...
T Consensus 8 ~~~k~iiFDlDGTL~D~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (238)
T PRK10748 8 GRISALTFDLDDTLYDNRPVILRTEQEALAFVQNYHPAL----RSFQNEDLQRLRQALREAEPEIYHDVTRWRWRAIEQA 83 (238)
T ss_pred CCceeEEEcCcccccCChHHHHHHHHHHHHHHHHhCcch----hhCCHHHHHHHHHHHHHhCchhhCcHHHHHHHHHHHH
Confidence 368999999999999999988888888776653211100 001122222222211110 1123334
Q ss_pred HHHcCCCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHH
Q 022348 133 FKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILC 212 (298)
Q Consensus 133 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~ 212 (298)
+.+.|++ .+...... +.....+..+. ..+.++||+.++|+.|++. ++++|+||++..
T Consensus 84 ~~~~g~~-----------~~~~~~~~----~~~~~~~~~~~--~~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~----- 140 (238)
T PRK10748 84 MLDAGLS-----------AEEASAGA----DAAMINFAKWR--SRIDVPQATHDTLKQLAKK-WPLVAITNGNAQ----- 140 (238)
T ss_pred HHHcCCC-----------HHHHHHHH----HHHHHHHHHHh--hcCCCCccHHHHHHHHHcC-CCEEEEECCCch-----
Confidence 4444432 11111111 11112222221 2357999999999999986 999999998765
Q ss_pred HHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecCh-hhHHHHHHcCCeEEEEcCCC
Q 022348 213 LENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSV-IGLQAATRAGMACVITYTSS 285 (298)
Q Consensus 213 l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~-~Di~~a~~aG~~~v~~~~~~ 285 (298)
++.+ |+..+ ||.++++++.+..||+|++|..+++++|+.|++|+||||+. .|+.+|+++||.+++++...
T Consensus 141 ~~~~-gl~~~--fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~~~ 211 (238)
T PRK10748 141 PELF-GLGDY--FEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILHVGDDLTTDVAGAIRCGMQACWINPEN 211 (238)
T ss_pred HHHC-CcHHh--hceeEecccCCcCCCcHHHHHHHHHHcCCChhHEEEEcCCcHHHHHHHHHCCCeEEEEcCCC
Confidence 3555 99988 99999999999999999999999999999999999999995 89999999999999887643
No 34
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.94 E-value=1.5e-25 Score=203.30 Aligned_cols=190 Identities=18% Similarity=0.243 Sum_probs=141.6
Q ss_pred CCccEEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHHHHHH-cCCCCCcc
Q 022348 65 QSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKE-HGWPSSTI 143 (298)
Q Consensus 65 ~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~g~~~~~~ 143 (298)
+++++|+||+||||+|+...+.++|.+++++++...... . ....+.+....|.+.......+.. .+
T Consensus 239 ~m~k~vIFDlDGTLiDs~~~~~~a~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~G~~~~~~~~~l~~~~~------ 305 (459)
T PRK06698 239 EMLQALIFDMDGTLFQTDKILELSLDDTFDHLRSLQLWD-----T--VTPIDKYREIMGVPLPKVWEALLPDHS------ 305 (459)
T ss_pred HhhhheeEccCCceecchhHHHHHHHHHHHHHhhhcccC-----C--CCCHHHHHHHcCCChHHHHHHHhhhcc------
Confidence 468999999999999999999999999999874210000 0 001234555667666554333321 11
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCcccc
Q 022348 144 FDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFE 223 (298)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~ 223 (298)
....+.+..++.+.+...+......++||+.++|+.|+++|++++|+||+....+...++.+ ++..+
T Consensus 306 -----------~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~-~l~~~- 372 (459)
T PRK06698 306 -----------LEIREQTDAYFLERLIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYY-DLDQW- 372 (459)
T ss_pred -----------hhHHHHHHHHHHHHhHHHHhhcCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHC-CcHhh-
Confidence 01122333444444444433345689999999999999999999999999999999999998 99988
Q ss_pred CcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCC
Q 022348 224 GLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 284 (298)
Q Consensus 224 ~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~ 284 (298)
|+.+++++++. .||+|++|..++++++ |++|++|||+.+|+++|+++|+.+|++...
T Consensus 373 -f~~i~~~d~v~-~~~kP~~~~~al~~l~--~~~~v~VGDs~~Di~aAk~AG~~~I~v~~~ 429 (459)
T PRK06698 373 -VTETFSIEQIN-SLNKSDLVKSILNKYD--IKEAAVVGDRLSDINAAKDNGLIAIGCNFD 429 (459)
T ss_pred -cceeEecCCCC-CCCCcHHHHHHHHhcC--cceEEEEeCCHHHHHHHHHCCCeEEEEeCC
Confidence 99999998874 4677889999998875 689999999999999999999999976443
No 35
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.94 E-value=3.9e-25 Score=178.97 Aligned_cols=180 Identities=21% Similarity=0.204 Sum_probs=128.2
Q ss_pred cEEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChh---------hHHHHHHHcCC
Q 022348 68 QALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKP---------KMRWYFKEHGW 138 (298)
Q Consensus 68 k~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---------~~~~~~~~~g~ 138 (298)
++|+|||||||+|+...+..++.+++++++..... .+.+....|.+.. .+..++.....
T Consensus 1 ~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 68 (197)
T TIGR01548 1 QALVLDMDGVMADVSQSYRRAIIDTVEHFGGVSVT------------HADIDHTKLAGNANNDWQLTHRLVVDGLNSASS 68 (197)
T ss_pred CceEEecCceEEechHHHHHHHHHHHHHHcCCCCC------------HHHHHHHHHccCccCchHHHHHHHHHhhhcccc
Confidence 47999999999999999999999999998743222 1234444544321 12222221100
Q ss_pred CCCcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHh--------cCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHH
Q 022348 139 PSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIK--------SGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVI 210 (298)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~ 210 (298)
. ....+....+ +.+.+.+.|..... .....+.+++.++|+.|++.|++++|+||+....+.
T Consensus 69 ------~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~ 137 (197)
T TIGR01548 69 ------E-RVRDAPTLEA----VTAQFQALYQGVGYYRDLATLGLIEDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAA 137 (197)
T ss_pred ------h-hccCCccHHH----HHHHHHHHHcCCcccccccchhhhccccccCHHHHHHHHHHcCCcEEEECCCCHHHHH
Confidence 0 0001112222 22333333332100 001235556699999999999999999999999999
Q ss_pred HHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHc
Q 022348 211 LCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRA 274 (298)
Q Consensus 211 ~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~a 274 (298)
..++.+ |+..+ |+.++++++... ||+|++|..+++++|+++++|++|||+.+|+++|+++
T Consensus 138 ~~l~~~-gl~~~--f~~~~~~~~~~~-KP~p~~~~~~~~~~~~~~~~~i~vGD~~~Di~aA~~a 197 (197)
T TIGR01548 138 KFLTTH-GLEIL--FPVQIWMEDCPP-KPNPEPLILAAKALGVEACHAAMVGDTVDDIITGRKA 197 (197)
T ss_pred HHHHHc-Cchhh--CCEEEeecCCCC-CcCHHHHHHHHHHhCcCcccEEEEeCCHHHHHHHHhC
Confidence 999998 99988 999999998877 9999999999999999999999999999999999875
No 36
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.94 E-value=2.1e-25 Score=178.70 Aligned_cols=99 Identities=22% Similarity=0.408 Sum_probs=91.6
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCC----CCCCHHHHHHHHHHhC
Q 022348 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQ----KKPDPSIYVTAAKRLG 252 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~----~KP~~~~~~~~~~~lg 252 (298)
...++||+.++|+.|+ .+++|+||+....+...++.+ |+..+ ||.++++++.+. +||+|++|..+++++|
T Consensus 82 ~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~-gl~~~--fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~ 155 (184)
T TIGR01993 82 KLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRL-GIEDC--FDGIFCFDTANPDYLLPKPSPQAYEKALREAG 155 (184)
T ss_pred hCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHc-CcHhh--hCeEEEeecccCccCCCCCCHHHHHHHHHHhC
Confidence 3579999999999998 479999999999999999998 99888 999999998876 5999999999999999
Q ss_pred CCCCcEEEEecChhhHHHHHHcCCeEEEE
Q 022348 253 ISEKDCLVVEDSVIGLQAATRAGMACVIT 281 (298)
Q Consensus 253 i~~~~~~~vgD~~~Di~~a~~aG~~~v~~ 281 (298)
+.|++|+||||+..|+++|+++|++++++
T Consensus 156 ~~~~~~l~vgD~~~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 156 VDPERAIFFDDSARNIAAAKALGMKTVLV 184 (184)
T ss_pred CCccceEEEeCCHHHHHHHHHcCCEEeeC
Confidence 99999999999999999999999999864
No 37
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.93 E-value=2.8e-24 Score=174.27 Aligned_cols=109 Identities=21% Similarity=0.364 Sum_probs=97.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcE
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDC 258 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~ 258 (298)
.++||+.++|+.|+++|++++|+||+........+....++..+ ||.++++++++..||+|++|..+++++|++|++|
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~--fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~ 161 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAA--ADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADA 161 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHh--cCEEEEecccCCCCCCHHHHHHHHHHcCCChhHe
Confidence 58999999999999999999999999887666555554467777 8999999999999999999999999999999999
Q ss_pred EEEecChhhHHHHHHcCCeEEEEcCCCchhH
Q 022348 259 LVVEDSVIGLQAATRAGMACVITYTSSTAEQ 289 (298)
Q Consensus 259 ~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~ 289 (298)
+||||+..|+++|+++|+.++++.++....+
T Consensus 162 l~vgD~~~di~aA~~aG~~~i~~~~~~~~~~ 192 (199)
T PRK09456 162 VFFDDNADNIEAANALGITSILVTDKQTIPD 192 (199)
T ss_pred EEeCCCHHHHHHHHHcCCEEEEecCCccHHH
Confidence 9999999999999999999998877655543
No 38
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.93 E-value=2e-24 Score=172.79 Aligned_cols=100 Identities=37% Similarity=0.707 Sum_probs=92.8
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCc
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKD 257 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~ 257 (298)
..++||+.++|+.|+++|++++|+||+.... ...+.++ ++..+ |+.++++++.+.+||+|++|..+++++|++|++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~-~l~~~--f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~ 159 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQEL-GLRDL--FDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEE 159 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhc-CCHHH--CCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcce
Confidence 5799999999999999999999999999887 5555556 99888 999999999999999999999999999999999
Q ss_pred EEEEecChhhHHHHHHcCCeEEEE
Q 022348 258 CLVVEDSVIGLQAATRAGMACVIT 281 (298)
Q Consensus 258 ~~~vgD~~~Di~~a~~aG~~~v~~ 281 (298)
|++|||+..|+++|+++|+.+|++
T Consensus 160 ~~~vgD~~~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 160 CLFVDDSPAGIEAAKAAGMHTVLV 183 (183)
T ss_pred EEEEcCCHHHHHHHHHcCCEEEeC
Confidence 999999999999999999999864
No 39
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.93 E-value=4.4e-25 Score=183.02 Aligned_cols=106 Identities=25% Similarity=0.399 Sum_probs=99.2
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCC
Q 022348 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEK 256 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~ 256 (298)
.++++|++.++|+.|+++ ++++|+||+....+...++++ |+..+ ||.++.+++.+..||+|++|+.+++++|++|+
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~-gl~~~--Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~ 172 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQL-GLLDY--FDAVFISEDVGVAKPDPEIFEYALEKLGVPPE 172 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHc-CChhh--hheEEEecccccCCCCcHHHHHHHHHcCCCcc
Confidence 468999999999999999 999999999988899999998 89988 99999999999999999999999999999999
Q ss_pred cEEEEecCh-hhHHHHHHcCCeEEEEcCCCc
Q 022348 257 DCLVVEDSV-IGLQAATRAGMACVITYTSST 286 (298)
Q Consensus 257 ~~~~vgD~~-~Di~~a~~aG~~~v~~~~~~~ 286 (298)
+|+||||+. ||+.+|+++||.+||++....
T Consensus 173 ~~l~VgD~~~~di~gA~~~G~~~vwi~~~~~ 203 (229)
T COG1011 173 EALFVGDSLENDILGARALGMKTVWINRGGK 203 (229)
T ss_pred eEEEECCChhhhhHHHHhcCcEEEEECCCCC
Confidence 999999999 577999999999998876543
No 40
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.93 E-value=9.7e-26 Score=181.75 Aligned_cols=207 Identities=19% Similarity=0.323 Sum_probs=137.9
Q ss_pred cCCccEEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHH--HHHHHh---cC--ChhhHHHHHHHc
Q 022348 64 SQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYD--VLQNQI---GG--GKPKMRWYFKEH 136 (298)
Q Consensus 64 ~~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---g~--~~~~~~~~~~~~ 136 (298)
.+.+++|+||++|||+.........|..+.+.+|++......... +...+.. .....+ .+ .....+..+-+.
T Consensus 4 ~~~iravtfD~~~tLl~~~~~~~~~y~~i~~~~gl~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~g~l~~~~ww~~lv~~ 82 (237)
T KOG3085|consen 4 LMRIRAVTFDAGGTLLATLPPVMEVYCEIAEAYGLEYDDSLIETI-FRKDFKKMSEKGPFFGLYSGELTLSQWWPKLVES 82 (237)
T ss_pred ccceEEEEEeCCCceeecCCccHHHHHHHHHHhCCCCCHHHHhHh-hhHHHHhhcccCCcccccCCcccHHHHHHHHHHH
Confidence 347899999999999997777778899999999988544221110 0000000 000001 11 111111111111
Q ss_pred CCCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHH
Q 022348 137 GWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENL 216 (298)
Q Consensus 137 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~ 216 (298)
. +.... .+..++..+. .....|.... ...+...+++.++++.||++|+.++++||.+.. .+..+..+
T Consensus 83 ~------f~~~~--~~~~~~~~~~---~~~~~~s~~~-~~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r-~~~~l~~~ 149 (237)
T KOG3085|consen 83 T------FGKAG--IDYEEELLEN---FSFRLFSTFA-PSAWKYLDGMQELLQKLRKKGTILGIISNFDDR-LRLLLLPL 149 (237)
T ss_pred H------hcccc--chhHHHHHhh---hhhheecccc-ccCceeccHHHHHHHHHHhCCeEEEEecCCcHH-HHHHhhcc
Confidence 0 00000 0111111111 1112222211 235678889999999999999999999999987 44667666
Q ss_pred hCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecCh-hhHHHHHHcCCeEEEEcCCCch
Q 022348 217 IGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSV-IGLQAATRAGMACVITYTSSTA 287 (298)
Q Consensus 217 ~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~-~Di~~a~~aG~~~v~~~~~~~~ 287 (298)
++..+ ||.++.|++++..||+|++|+.+++++|+.|++|+||||+. ||+++|+++||.++++.+..++
T Consensus 150 -~l~~~--fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~~~~~ 218 (237)
T KOG3085|consen 150 -GLSAY--FDFVVESCEVGLEKPDPRIFQLALERLGVKPEECVHIGDLLENDYEGARNLGWHAILVDNSITA 218 (237)
T ss_pred -CHHHh--hhhhhhhhhhccCCCChHHHHHHHHHhCCChHHeEEecCccccccHhHHHcCCEEEEEccccch
Confidence 89877 99999999999999999999999999999999999999999 7999999999999976655443
No 41
>PLN02811 hydrolase
Probab=99.93 E-value=6.9e-24 Score=174.60 Aligned_cols=179 Identities=23% Similarity=0.389 Sum_probs=131.4
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHHH-HHHcCCCCCcccCCCCCCCh
Q 022348 74 CDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWY-FKEHGWPSSTIFDNPPVTDD 152 (298)
Q Consensus 74 ~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ 152 (298)
|||||+|+...+..+|.++++++|++.. .+.+....|......... +...+++. ..
T Consensus 1 ~DGTL~Ds~~~~~~a~~~~~~~~g~~~~-------------~~~~~~~~G~~~~~~~~~~~~~~~~~~----------~~ 57 (220)
T PLN02811 1 MDGLLLDTEKFYTEVQEKILARYGKTFD-------------WSLKAKMMGKKAIEAARIFVEESGLSD----------SL 57 (220)
T ss_pred CCCcceecHHHHHHHHHHHHHHcCCCCC-------------HHHHHHccCCCHHHHHHHHHHHhCCCC----------CC
Confidence 7999999999999999999999998532 123344566655544333 33334320 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCC
Q 022348 153 DQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGD 232 (298)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~ 232 (298)
...++. +.....+.... ....++||+.++|+.|+++|++++|+||+........+....++..+ |+.+++++
T Consensus 58 ~~~~~~----~~~~~~~~~~~--~~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~--f~~i~~~~ 129 (220)
T PLN02811 58 SPEDFL----VEREAMLQDLF--PTSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSL--MHHVVTGD 129 (220)
T ss_pred CHHHHH----HHHHHHHHHHH--hhCCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhh--CCEEEECC
Confidence 111111 11222222222 23578999999999999999999999999876554434333366777 89999999
Q ss_pred --CCCCCCCCHHHHHHHHHHhC---CCCCcEEEEecChhhHHHHHHcCCeEEEEcC
Q 022348 233 --DVKQKKPDPSIYVTAAKRLG---ISEKDCLVVEDSVIGLQAATRAGMACVITYT 283 (298)
Q Consensus 233 --~~~~~KP~~~~~~~~~~~lg---i~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~ 283 (298)
+++..||+|++|..+++++| +.|++|+||||+..|+++|+++|+.+|++..
T Consensus 130 ~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~~v~IgDs~~di~aA~~aG~~~i~v~~ 185 (220)
T PLN02811 130 DPEVKQGKPAPDIFLAAARRFEDGPVDPGKVLVFEDAPSGVEAAKNAGMSVVMVPD 185 (220)
T ss_pred hhhccCCCCCcHHHHHHHHHhCCCCCCccceEEEeccHhhHHHHHHCCCeEEEEeC
Confidence 88889999999999999997 9999999999999999999999999997743
No 42
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.93 E-value=3.3e-24 Score=166.80 Aligned_cols=154 Identities=24% Similarity=0.447 Sum_probs=118.6
Q ss_pred EEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHHHHHHcCCCCCcccCCCC
Q 022348 69 ALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTIFDNPP 148 (298)
Q Consensus 69 ~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~ 148 (298)
+|+||+||||+|+...+..+|.+++++++.+ .+.+....|.+...+..+...
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~g~~~~~~~~~~~~------------- 52 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGED---------------FQALKALRGLAEELLYRIATS------------- 52 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhccc---------------HHHHHHHHccChHHHHHHHHH-------------
Confidence 4899999999999989999999999988742 123332333322222111110
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceE
Q 022348 149 VTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCF 228 (298)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v 228 (298)
.+.+.. + ......+||+.++|+.|+++|++++|+||+....+...++.+ +..+ |+.+
T Consensus 53 ---------~~~~~~-----~-----~~~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~--l~~~--f~~i 109 (154)
T TIGR01549 53 ---------FEELLG-----Y-----DAEEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH--LGDY--FDLI 109 (154)
T ss_pred ---------HHHHhC-----c-----chhheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH--HHhc--CcEE
Confidence 011111 1 123357799999999999999999999999999898888875 5566 8889
Q ss_pred EeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcC
Q 022348 229 LAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAG 275 (298)
Q Consensus 229 ~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG 275 (298)
+++++.+ .||+|++|..+++++|+++ +|+||||+..|+++|+++|
T Consensus 110 ~~~~~~~-~Kp~~~~~~~~~~~~~~~~-~~l~iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 110 LGSDEFG-AKPEPEIFLAALESLGLPP-EVLHVGDNLNDIEGARNAG 154 (154)
T ss_pred EecCCCC-CCcCHHHHHHHHHHcCCCC-CEEEEeCCHHHHHHHHHcc
Confidence 9988888 9999999999999999999 9999999999999999987
No 43
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.92 E-value=1.7e-23 Score=168.38 Aligned_cols=193 Identities=28% Similarity=0.419 Sum_probs=150.3
Q ss_pred cCCccEEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHHHHH-HcCCCCCc
Q 022348 64 SQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFK-EHGWPSST 142 (298)
Q Consensus 64 ~~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~g~~~~~ 142 (298)
...+.+++||+||||+|++..+.+.|...+.++|...+. .......|.+..++...+- +...+
T Consensus 7 ~~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk~~~~-------------~~~~~~mG~~~~eaa~~~~~~~~dp--- 70 (222)
T KOG2914|consen 7 SLKVSACLFDMDGTLVDTEDLYTEAWQELLDRYGKPYPW-------------DVKVKSMGKRTSEAARLFVKKLPDP--- 70 (222)
T ss_pred ccceeeEEEecCCcEEecHHHHHHHHHHHHHHcCCCChH-------------HHHHHHcCCCHHHHHHHHHhhcCCC---
Confidence 346889999999999999999999999999999974322 2334456766666655554 33332
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccc
Q 022348 143 IFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERF 222 (298)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~ 222 (298)
...+++ ...+.+...... ....+.||+.++++.|+.+|++++++|+.+....+..+.++.++-..
T Consensus 71 ---------~s~ee~----~~e~~~~~~~~~--~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~ 135 (222)
T KOG2914|consen 71 ---------VSREEF----NKEEEEILDRLF--MNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKN 135 (222)
T ss_pred ---------CCHHHH----HHHHHHHHHHhc--cccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHh
Confidence 223333 333333333332 34578999999999999999999999999999899888888446666
Q ss_pred cCcceEEe--CCCCCCCCCCHHHHHHHHHHhCCCC-CcEEEEecChhhHHHHHHcCCeEEEEcCCCchhH
Q 022348 223 EGLDCFLA--GDDVKQKKPDPSIYVTAAKRLGISE-KDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQ 289 (298)
Q Consensus 223 ~~fd~v~~--~~~~~~~KP~~~~~~~~~~~lgi~~-~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~ 289 (298)
|+.++. +.++..+||+|++|..+++.+|..| +.|++++|++..+++|++|||++|++.+......
T Consensus 136 --f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~~~~~~ 203 (222)
T KOG2914|consen 136 --FSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVATPDLSNL 203 (222)
T ss_pred --cCCCeecCCccccCCCCCchHHHHHHHhcCCCCccceEEECCCHHHHHHHHhcCCeEEEecCCCcchh
Confidence 777777 5578899999999999999999999 9999999999999999999999999988544333
No 44
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.90 E-value=1.3e-23 Score=167.04 Aligned_cols=166 Identities=19% Similarity=0.312 Sum_probs=116.1
Q ss_pred EEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCC-hHHHHHHH-HHhcCChh-------hHHHHHHHcCCC
Q 022348 69 ALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWD-PEFYDVLQ-NQIGGGKP-------KMRWYFKEHGWP 139 (298)
Q Consensus 69 ~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~g~~~~-------~~~~~~~~~g~~ 139 (298)
+|+||+||||+|+...+..++..++.+.+..... |. ......+. ...|.... .+.....++|++
T Consensus 1 ~viFD~DGTL~D~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 73 (175)
T TIGR01493 1 AMVFDVYGTLVDVHGGVRACLAAIAPEGGAFSDL-------WRAKQQEYSWRRSLMGDRRAFPEDTVRALRYIADRLGLD 73 (175)
T ss_pred CeEEecCCcCcccHHHHHHHHHHhhhhhhHHHHH-------HHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHcCCC
Confidence 5899999999999988888888877664321000 00 01111111 12221111 123333444432
Q ss_pred CCcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCC
Q 022348 140 SSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGM 219 (298)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l 219 (298)
.. . + ..+.+.+.+ ..+.++||+.++|+ +++|+||+....+...++++ ++
T Consensus 74 ~~----------~---~----~~~~~~~~~------~~~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~-~l 122 (175)
T TIGR01493 74 AE----------P---K----YGERLRDAY------KNLPPWPDSAAALA-------RVAILSNASHWAFDQFAQQA-GL 122 (175)
T ss_pred CC----------H---H----HHHHHHHHH------hcCCCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHC-CC
Confidence 10 0 0 111111212 23579999999998 37899999999999999998 99
Q ss_pred ccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHc
Q 022348 220 ERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRA 274 (298)
Q Consensus 220 ~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~a 274 (298)
..+ ||.++++++++..||+|++|..+++++|++|++|+||||+..|+++|+++
T Consensus 123 ~~~--fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l~vgD~~~Di~~A~~~ 175 (175)
T TIGR01493 123 PWY--FDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVLMVAAHQWDLIGARKF 175 (175)
T ss_pred HHH--HhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeEeEecChhhHHHHhcC
Confidence 988 99999999999999999999999999999999999999999999999864
No 45
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.89 E-value=3.5e-22 Score=161.77 Aligned_cols=102 Identities=14% Similarity=0.204 Sum_probs=81.4
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCcccc--CcceEEeCCCCCCCCCCHHHHHHHHHHhCCC
Q 022348 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFE--GLDCFLAGDDVKQKKPDPSIYVTAAKRLGIS 254 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~--~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~ 254 (298)
...++||+.++|+.|++.+ +++++||.........++.+ ++..++ .|+.++++++ .||+|++|..+++++|
T Consensus 72 ~~~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~~~~~~~~-~l~~~f~~~f~~i~~~~~---~~~kp~~~~~a~~~~~-- 144 (197)
T PHA02597 72 YLSAYDDALDVINKLKEDY-DFVAVTALGDSIDALLNRQF-NLNALFPGAFSEVLMCGH---DESKEKLFIKAKEKYG-- 144 (197)
T ss_pred hccCCCCHHHHHHHHHhcC-CEEEEeCCccchhHHHHhhC-CHHHhCCCcccEEEEecc---CcccHHHHHHHHHHhC--
Confidence 3569999999999999974 68888987766555455555 666542 1577777765 3677899999999999
Q ss_pred CCcEEEEecChhhHHHHHHc--CCeEEEEcCCC
Q 022348 255 EKDCLVVEDSVIGLQAATRA--GMACVITYTSS 285 (298)
Q Consensus 255 ~~~~~~vgD~~~Di~~a~~a--G~~~v~~~~~~ 285 (298)
+++|+||||+..|+++|+++ |+++|++..+.
T Consensus 145 ~~~~v~vgDs~~di~aA~~a~~Gi~~i~~~~~~ 177 (197)
T PHA02597 145 DRVVCFVDDLAHNLDAAHEALSQLPVIHMLRGE 177 (197)
T ss_pred CCcEEEeCCCHHHHHHHHHHHcCCcEEEecchh
Confidence 88899999999999999999 99999765443
No 46
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.89 E-value=1.1e-21 Score=161.65 Aligned_cols=100 Identities=21% Similarity=0.239 Sum_probs=85.0
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEE-------eCC---CCCCCCCCHHHHHHH
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFL-------AGD---DVKQKKPDPSIYVTA 247 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~-------~~~---~~~~~KP~~~~~~~~ 247 (298)
..++||+.++|+.|+++|++++|+||+....+...++.+ ++..+ |+..+ .+. ....++|++.+|+.+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~-~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 160 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKL-GLDAA--FANRLEVEDGKLTGLVEGPIVDASYKGKTLLIL 160 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc-CCCce--EeeEEEEECCEEEEEecCcccCCcccHHHHHHH
Confidence 469999999999999999999999999999899999888 88876 54322 221 122356789999999
Q ss_pred HHHhCCCCCcEEEEecChhhHHHHHHcCCeEEE
Q 022348 248 AKRLGISEKDCLVVEDSVIGLQAATRAGMACVI 280 (298)
Q Consensus 248 ~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~ 280 (298)
++++|+++++|+||||+.+|+++|+.+|+.+++
T Consensus 161 ~~~~~~~~~~~i~iGDs~~Di~aa~~ag~~i~~ 193 (219)
T TIGR00338 161 LRKEGISPENTVAVGDGANDLSMIKAAGLGIAF 193 (219)
T ss_pred HHHcCCCHHHEEEEECCHHHHHHHHhCCCeEEe
Confidence 999999999999999999999999999999654
No 47
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.88 E-value=1.6e-21 Score=158.38 Aligned_cols=106 Identities=18% Similarity=0.090 Sum_probs=90.3
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCC----------CHHHHHHH
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKP----------DPSIYVTA 247 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP----------~~~~~~~~ 247 (298)
..++||+.++|+.|+++|++++|+||+....++..++.+ |+..+ |+..+..++.+..+| +++.+..+
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~-g~~~~--~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~ 155 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKL-NPDYV--YSNELVFDEKGFIQPDGIVRVTFDNKGEAVERL 155 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHh-CCCeE--EEEEEEEcCCCeEecceeeEEccccHHHHHHHH
Confidence 479999999999999999999999999999999999998 88877 666666655444333 33688899
Q ss_pred HHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCCCc
Q 022348 248 AKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSST 286 (298)
Q Consensus 248 ~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~ 286 (298)
++++|+++++|+||||+.+|+++++.+|+.+++..++..
T Consensus 156 ~~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~~~ 194 (201)
T TIGR01491 156 KRELNPSLTETVAVGDSKNDLPMFEVADISISLGDEGHA 194 (201)
T ss_pred HHHhCCCHHHEEEEcCCHhHHHHHHhcCCeEEECCCccc
Confidence 999999999999999999999999999999877665544
No 48
>PLN02954 phosphoserine phosphatase
Probab=99.88 E-value=5.5e-21 Score=157.92 Aligned_cols=177 Identities=17% Similarity=0.193 Sum_probs=118.0
Q ss_pred cCCccEEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHHHHHH-cCCCCCc
Q 022348 64 SQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKE-HGWPSST 142 (298)
Q Consensus 64 ~~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~g~~~~~ 142 (298)
++++|+|+||+||||++++ .+..+++++|... ..+++...+.++...+...+.. .+..
T Consensus 9 ~~~~k~viFDfDGTL~~~~-----~~~~~~~~~g~~~-------------~~~~~~~~~~~g~~~~~~~~~~~~~~~--- 67 (224)
T PLN02954 9 WRSADAVCFDVDSTVCVDE-----GIDELAEFCGAGE-------------AVAEWTAKAMGGSVPFEEALAARLSLF--- 67 (224)
T ss_pred HccCCEEEEeCCCcccchH-----HHHHHHHHcCChH-------------HHHHHHHHHHCCCCCHHHHHHHHHHHc---
Confidence 4579999999999999974 3467777777531 1222222222222233333322 2110
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCcc-
Q 022348 143 IFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMER- 221 (298)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~- 221 (298)
.. . .+ ...+.+.. ....++||+.++|+.|+++|++++|+|++....++..++.+ |+..
T Consensus 68 -----~~---~----~~----~~~~~~~~----~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~-gi~~~ 126 (224)
T PLN02954 68 -----KP---S----LS----QVEEFLEK----RPPRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAIL-GIPPE 126 (224)
T ss_pred -----CC---C----HH----HHHHHHHH----ccCCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHh-CCChh
Confidence 00 0 01 11111221 23468999999999999999999999999999999999998 8863
Q ss_pred -ccCcceE--------EeCCC----CCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCCCc
Q 022348 222 -FEGLDCF--------LAGDD----VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSST 286 (298)
Q Consensus 222 -~~~fd~v--------~~~~~----~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~ 286 (298)
+ |+.. +.+.+ ....+++|++++.+++++|. ++|++|||+.+|+.+++++|+.+++.+++..
T Consensus 127 ~~--~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~~~~~~~~--~~~i~iGDs~~Di~aa~~~~~~~~~~~~~~~ 200 (224)
T PLN02954 127 NI--FANQILFGDSGEYAGFDENEPTSRSGGKAEAVQHIKKKHGY--KTMVMIGDGATDLEARKPGGADLFIGYGGVQ 200 (224)
T ss_pred hE--EEeEEEEcCCCcEECccCCCcccCCccHHHHHHHHHHHcCC--CceEEEeCCHHHHHhhhcCCCCEEEecCCCc
Confidence 4 4321 12211 12356788999999999885 6899999999999999999999877666543
No 49
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.87 E-value=1.3e-21 Score=150.51 Aligned_cols=105 Identities=33% Similarity=0.474 Sum_probs=84.8
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCCh---------------hhHHHHHHHHhCCccccCcceEE-eCCCCCCCCCCHH
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATK---------------SSVILCLENLIGMERFEGLDCFL-AGDDVKQKKPDPS 242 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~---------------~~~~~~l~~~~~l~~~~~fd~v~-~~~~~~~~KP~~~ 242 (298)
.++||+.++|+.|+++|++++|+||... ..+...++.+ ++.....|..+. .++..+..||+|+
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~~~~~KP~~~ 105 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQL-GVAVDGVLFCPHHPADNCSCRKPKPG 105 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhC-CCceeEEEECCCCCCCCCCCCCCCHH
Confidence 5899999999999999999999999873 3455667676 765210011111 1345567899999
Q ss_pred HHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCC
Q 022348 243 IYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 284 (298)
Q Consensus 243 ~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~ 284 (298)
+|+.+++++|+++++|+||||+..|+++|+++|+.+|+++.+
T Consensus 106 ~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v~i~~~ 147 (147)
T TIGR01656 106 LILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAVLLVDG 147 (147)
T ss_pred HHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCEEEecCC
Confidence 999999999999999999999999999999999999988753
No 50
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.87 E-value=1.2e-20 Score=153.48 Aligned_cols=105 Identities=21% Similarity=0.275 Sum_probs=88.4
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHH--hCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCC
Q 022348 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENL--IGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGIS 254 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~--~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~ 254 (298)
...++||+.++|+.|+++|++++|+||+....+...++.. .++..+ |+.++.. .. ..||+|+.|..+++++|++
T Consensus 93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~--f~~~fd~-~~-g~KP~p~~y~~i~~~lgv~ 168 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPY--FSGYFDT-TV-GLKTEAQSYVKIAGQLGSP 168 (220)
T ss_pred ccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhh--cceEEEe-Cc-ccCCCHHHHHHHHHHhCcC
Confidence 3469999999999999999999999999988777777664 145555 6666542 23 3699999999999999999
Q ss_pred CCcEEEEecChhhHHHHHHcCCeEEEEcCCC
Q 022348 255 EKDCLVVEDSVIGLQAATRAGMACVITYTSS 285 (298)
Q Consensus 255 ~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~ 285 (298)
|++|+||||+..|+++|+++||.++++..+.
T Consensus 169 p~e~lfVgDs~~Di~AA~~AG~~ti~v~r~g 199 (220)
T TIGR01691 169 PREILFLSDIINELDAARKAGLHTGQLVRPG 199 (220)
T ss_pred hhHEEEEeCCHHHHHHHHHcCCEEEEEECCC
Confidence 9999999999999999999999999665443
No 51
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.86 E-value=1.3e-20 Score=161.92 Aligned_cols=102 Identities=20% Similarity=0.241 Sum_probs=85.4
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccC-----cceEEeCC---CCCCCCCCHHHHHHHHH
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEG-----LDCFLAGD---DVKQKKPDPSIYVTAAK 249 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~-----fd~v~~~~---~~~~~KP~~~~~~~~~~ 249 (298)
++++||+.++++.|++.|++++|+|++.....+..++++ ++..... .+..+++. ++..+||+++.++.+++
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~L-gld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~ 258 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKL-RLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQ 258 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHc-CCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHH
Confidence 579999999999999999999999999988888888887 8865311 12222222 23356899999999999
Q ss_pred HhCCCCCcEEEEecChhhHHHHHHcCCeEEE
Q 022348 250 RLGISEKDCLVVEDSVIGLQAATRAGMACVI 280 (298)
Q Consensus 250 ~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~ 280 (298)
++|+++++|++|||+.||++|++.||+.+++
T Consensus 259 ~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~ 289 (322)
T PRK11133 259 EYEIPLAQTVAIGDGANDLPMIKAAGLGIAY 289 (322)
T ss_pred HcCCChhhEEEEECCHHHHHHHHHCCCeEEe
Confidence 9999999999999999999999999999876
No 52
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.85 E-value=1.3e-20 Score=150.40 Aligned_cols=102 Identities=30% Similarity=0.409 Sum_probs=84.0
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCCh---------------hhHHHHHHHHhCCccccCcceEEeC-----CCCCCCC
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATK---------------SSVILCLENLIGMERFEGLDCFLAG-----DDVKQKK 238 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~---------------~~~~~~l~~~~~l~~~~~fd~v~~~-----~~~~~~K 238 (298)
.++||+.++|++|+++|++++|+||+.. ..+...++.+ ++ . |+.++.+ ++.+..|
T Consensus 29 ~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~--~--f~~i~~~~~~~~~~~~~~K 103 (181)
T PRK08942 29 IPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADR-GG--R--LDGIYYCPHHPEDGCDCRK 103 (181)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHc-CC--c--cceEEECCCCCCCCCcCCC
Confidence 6899999999999999999999999863 2233345554 54 2 6766653 3467889
Q ss_pred CCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCCC
Q 022348 239 PDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSS 285 (298)
Q Consensus 239 P~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~ 285 (298)
|+|++|..+++++|+.+++|+||||+.+|+++|+++|+.++++..+.
T Consensus 104 P~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~ 150 (181)
T PRK08942 104 PKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGK 150 (181)
T ss_pred CCHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCC
Confidence 99999999999999999999999999999999999999988665443
No 53
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.84 E-value=3.3e-20 Score=140.37 Aligned_cols=97 Identities=33% Similarity=0.502 Sum_probs=84.3
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCC--------hhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHH
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAAT--------KSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKR 250 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~--------~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~ 250 (298)
.++||+.++|+.|+++|++++++||+. ...+...++.+ ++. ++.++.+. +..||+|++|+.++++
T Consensus 25 ~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~-~l~----~~~~~~~~--~~~KP~~~~~~~~~~~ 97 (132)
T TIGR01662 25 ILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEEL-GVP----IDVLYACP--HCRKPKPGMFLEALKR 97 (132)
T ss_pred eeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHC-CCC----EEEEEECC--CCCCCChHHHHHHHHH
Confidence 589999999999999999999999998 66778888887 775 23333333 5779999999999999
Q ss_pred h-CCCCCcEEEEec-ChhhHHHHHHcCCeEEEEc
Q 022348 251 L-GISEKDCLVVED-SVIGLQAATRAGMACVITY 282 (298)
Q Consensus 251 l-gi~~~~~~~vgD-~~~Di~~a~~aG~~~v~~~ 282 (298)
+ +++|++++|||| +..|+++|+++|+.+|+++
T Consensus 98 ~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 98 FNEIDPEESVYVGDQDLTDLQAAKRAGLAFILVA 131 (132)
T ss_pred cCCCChhheEEEcCCCcccHHHHHHCCCeEEEee
Confidence 9 599999999999 6899999999999999864
No 54
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.84 E-value=1.2e-20 Score=147.43 Aligned_cols=111 Identities=14% Similarity=0.051 Sum_probs=97.1
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEeCC-ChhhHHHHHHHHhCCc---------cccCcceEEeCCCCCCCCCCHHHHHH
Q 022348 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAA-TKSSVILCLENLIGME---------RFEGLDCFLAGDDVKQKKPDPSIYVT 246 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~g~~i~i~S~~-~~~~~~~~l~~~~~l~---------~~~~fd~v~~~~~~~~~KP~~~~~~~ 246 (298)
...++||+.++|+.|+++|++++|+||+ ....++..++.+ ++. .+ |+.++++++....||.+.+++.
T Consensus 43 ~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~-~l~~~~~~~~~~~~--Fd~iv~~~~~~~~kp~~~i~~~ 119 (174)
T TIGR01685 43 EVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTF-EITYAGKTVPMHSL--FDDRIEIYKPNKAKQLEMILQK 119 (174)
T ss_pred EEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhC-CcCCCCCcccHHHh--ceeeeeccCCchHHHHHHHHHH
Confidence 3579999999999999999999999998 777788888887 887 88 8999999887777888888888
Q ss_pred HHHHh--CCCCCcEEEEecChhhHHHHHHcCCeEEEEcCCCchhHh
Q 022348 247 AAKRL--GISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQV 290 (298)
Q Consensus 247 ~~~~l--gi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~~ 290 (298)
+.+.+ |+.|++|+||||+..|+++|+++|+.++++..+.....+
T Consensus 120 ~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~v~~g~~~~~~ 165 (174)
T TIGR01685 120 VNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCYCPSGMDKGTF 165 (174)
T ss_pred hhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEEcCCCccHHHH
Confidence 88777 899999999999999999999999999987655555443
No 55
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.83 E-value=3.1e-19 Score=146.38 Aligned_cols=100 Identities=19% Similarity=0.189 Sum_probs=83.4
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCC----ChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCC
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAA----TKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGI 253 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~----~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi 253 (298)
..+++++.++|+.|+++|++++++||. ....++..++.+ |+..+ |+.++++++....||++. .+++++|+
T Consensus 113 s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~l-Gi~~~--f~~i~~~d~~~~~Kp~~~---~~l~~~~i 186 (237)
T TIGR01672 113 SIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNF-HIPAM--NPVIFAGDKPGQYQYTKT---QWIQDKNI 186 (237)
T ss_pred CcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHh-CCchh--eeEEECCCCCCCCCCCHH---HHHHhCCC
Confidence 357788999999999999999999998 445677777777 99888 899999888877888875 35567776
Q ss_pred CCCcEEEEecChhhHHHHHHcCCeEE-EEcCCCch
Q 022348 254 SEKDCLVVEDSVIGLQAATRAGMACV-ITYTSSTA 287 (298)
Q Consensus 254 ~~~~~~~vgD~~~Di~~a~~aG~~~v-~~~~~~~~ 287 (298)
++||||+.+|+.+|+++|+.++ +.|+.+..
T Consensus 187 ----~i~vGDs~~DI~aAk~AGi~~I~V~~g~~s~ 217 (237)
T TIGR01672 187 ----RIHYGDSDNDITAAKEAGARGIRILRASNST 217 (237)
T ss_pred ----eEEEeCCHHHHHHHHHCCCCEEEEEecCCCC
Confidence 7999999999999999999998 55665543
No 56
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.83 E-value=8.5e-20 Score=144.88 Aligned_cols=102 Identities=23% Similarity=0.289 Sum_probs=81.5
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCCh---------------hhHHHHHHHHhCCccccCcceEEeC-----------
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATK---------------SSVILCLENLIGMERFEGLDCFLAG----------- 231 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~---------------~~~~~~l~~~~~l~~~~~fd~v~~~----------- 231 (298)
+.++||+.++|+.|+++|++++|+||... ......++.+ ++. |+.++.+
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~----~~~i~~~~~~~~~~~~~~ 99 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAER-DVD----LDGIYYCPHHPEGVEEFR 99 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHc-CCC----ccEEEECCCCCccccccc
Confidence 36899999999999999999999999874 1222334443 333 5665543
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeE-EEEcCC
Q 022348 232 DDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMAC-VITYTS 284 (298)
Q Consensus 232 ~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~-v~~~~~ 284 (298)
++....||+|++|..+++++|+++++|+||||+..|+++|+++|+.+ +++..+
T Consensus 100 ~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g 153 (176)
T TIGR00213 100 QVCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTG 153 (176)
T ss_pred CCCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEecC
Confidence 24557899999999999999999999999999999999999999998 555433
No 57
>PRK06769 hypothetical protein; Validated
Probab=99.83 E-value=1e-19 Score=143.63 Aligned_cols=103 Identities=19% Similarity=0.308 Sum_probs=82.1
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChh--------hHHHHHHHHhCCccccCcceEE-eCCCCCCCCCCHHHHHHHHH
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKS--------SVILCLENLIGMERFEGLDCFL-AGDDVKQKKPDPSIYVTAAK 249 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~--------~~~~~l~~~~~l~~~~~fd~v~-~~~~~~~~KP~~~~~~~~~~ 249 (298)
.++||+.++|++|+++|++++|+||.... .....++.+ ++..+ |..+. .+++.+..||+|++|..+++
T Consensus 28 ~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~-g~~~~--~~~~~~~~~~~~~~KP~p~~~~~~~~ 104 (173)
T PRK06769 28 TLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGF-GFDDI--YLCPHKHGDGCECRKPSTGMLLQAAE 104 (173)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhC-CcCEE--EECcCCCCCCCCCCCCCHHHHHHHHH
Confidence 58999999999999999999999998642 122234443 44433 32222 34556788999999999999
Q ss_pred HhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCC
Q 022348 250 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 284 (298)
Q Consensus 250 ~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~ 284 (298)
++|++|++|+||||+..|+++|+++|+.+|++..+
T Consensus 105 ~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~g 139 (173)
T PRK06769 105 KHGLDLTQCAVIGDRWTDIVAAAKVNATTILVRTG 139 (173)
T ss_pred HcCCCHHHeEEEcCCHHHHHHHHHCCCeEEEEecC
Confidence 99999999999999999999999999999966543
No 58
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.82 E-value=7.6e-20 Score=142.04 Aligned_cols=103 Identities=18% Similarity=0.245 Sum_probs=88.7
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCC---------------hhhHHHHHHHHhCCccccCcceEE-e----CCCCCCC
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAAT---------------KSSVILCLENLIGMERFEGLDCFL-A----GDDVKQK 237 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~---------------~~~~~~~l~~~~~l~~~~~fd~v~-~----~~~~~~~ 237 (298)
+.++||+.++|+.|+++|++++|+||.. ...+...++.+ |+. |+.++ + +++....
T Consensus 28 ~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~-gl~----fd~ii~~~~~~~~~~~~~ 102 (161)
T TIGR01261 28 LRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQ-GII----FDDVLICPHFPDDNCDCR 102 (161)
T ss_pred eeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHC-CCc----eeEEEECCCCCCCCCCCC
Confidence 3699999999999999999999999973 33566677777 775 56554 4 4788889
Q ss_pred CCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCCC
Q 022348 238 KPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSS 285 (298)
Q Consensus 238 KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~ 285 (298)
||+|++|..+++++|+++++|+||||+.+|+++|+++|+.++++....
T Consensus 103 KP~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~~~ 150 (161)
T TIGR01261 103 KPKIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQYDEEE 150 (161)
T ss_pred CCCHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEEChhh
Confidence 999999999999999999999999999999999999999999776554
No 59
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.82 E-value=4.9e-19 Score=137.92 Aligned_cols=104 Identities=22% Similarity=0.311 Sum_probs=93.4
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCC------CCCCCCHHHHHHHHHH
Q 022348 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDV------KQKKPDPSIYVTAAKR 250 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~------~~~KP~~~~~~~~~~~ 250 (298)
.+.+.+..+.+|-.|++++ .++.||+...++..+++.+ |+.++ ||.+++.+-. ..+||++.+|+.+++.
T Consensus 98 ~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~L-GieDc--Fegii~~e~~np~~~~~vcKP~~~afE~a~k~ 172 (244)
T KOG3109|consen 98 DLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKL-GIEDC--FEGIICFETLNPIEKTVVCKPSEEAFEKAMKV 172 (244)
T ss_pred hcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHh-ChHHh--ccceeEeeccCCCCCceeecCCHHHHHHHHHH
Confidence 3689999999999999875 8999999999999999999 99988 9998887532 3789999999999999
Q ss_pred hCCC-CCcEEEEecChhhHHHHHHcCCeEEEEcCCC
Q 022348 251 LGIS-EKDCLVVEDSVIGLQAATRAGMACVITYTSS 285 (298)
Q Consensus 251 lgi~-~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~ 285 (298)
.|+. |.+++||+|+.++|..|++.||.++++.-.+
T Consensus 173 agi~~p~~t~FfDDS~~NI~~ak~vGl~tvlv~~~~ 208 (244)
T KOG3109|consen 173 AGIDSPRNTYFFDDSERNIQTAKEVGLKTVLVGREH 208 (244)
T ss_pred hCCCCcCceEEEcCchhhHHHHHhccceeEEEEeee
Confidence 9998 9999999999999999999999998765444
No 60
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.82 E-value=5.3e-19 Score=145.39 Aligned_cols=102 Identities=22% Similarity=0.209 Sum_probs=82.2
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHH----------HHHH
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSI----------YVTA 247 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~----------~~~~ 247 (298)
..++||+.++|+.|+++|++++|+||+....+..+++.+.....+...+..+.++.....||.|.. +..+
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~~ 152 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGLIPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPSL 152 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHhCCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHHH
Confidence 579999999999999999999999999999999999876111223111455666666667777654 4578
Q ss_pred HHHhCCCCCcEEEEecChhhHHHHHHcCCeEE
Q 022348 248 AKRLGISEKDCLVVEDSVIGLQAATRAGMACV 279 (298)
Q Consensus 248 ~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v 279 (298)
+++++..+++|++|||+.+|+.+|+.+|+.++
T Consensus 153 l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a 184 (219)
T PRK09552 153 IRKLSDTNDFHIVIGDSITDLEAAKQADKVFA 184 (219)
T ss_pred HHHhccCCCCEEEEeCCHHHHHHHHHCCccee
Confidence 89999999999999999999999999999543
No 61
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.79 E-value=7.5e-19 Score=137.37 Aligned_cols=96 Identities=16% Similarity=0.226 Sum_probs=83.0
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChh------------hHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHH
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKS------------SVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTA 247 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~------------~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~ 247 (298)
++||+.++|+.|+++|++++|+||+... .+...++.+ ++. ++.++++++....||+|+++..+
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~-gl~----~~~ii~~~~~~~~KP~p~~~~~~ 117 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKL-KVP----IQVLAATHAGLYRKPMTGMWEYL 117 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHc-CCC----EEEEEecCCCCCCCCccHHHHHH
Confidence 7899999999999999999999998753 356778877 774 35666666666789999999999
Q ss_pred HHHhC--CCCCcEEEEecCh--------hhHHHHHHcCCeEEE
Q 022348 248 AKRLG--ISEKDCLVVEDSV--------IGLQAATRAGMACVI 280 (298)
Q Consensus 248 ~~~lg--i~~~~~~~vgD~~--------~Di~~a~~aG~~~v~ 280 (298)
++++| +++++++||||+. +|+++|+++|+.+++
T Consensus 118 ~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~ 160 (166)
T TIGR01664 118 QSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFKY 160 (166)
T ss_pred HHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcCC
Confidence 99999 9999999999996 699999999999864
No 62
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.77 E-value=1.8e-17 Score=135.00 Aligned_cols=99 Identities=17% Similarity=0.144 Sum_probs=78.4
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCC----CCCCCCCHHHHHHHHHHhCC
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDD----VKQKKPDPSIYVTAAKRLGI 253 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~----~~~~KP~~~~~~~~~~~lgi 253 (298)
..++||+.++|..|+++ ++++|+||+....++..++++ ++..+ |+..+..++ .+..++.|.....++++++.
T Consensus 67 ~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~-gl~~~--f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~ 142 (205)
T PRK13582 67 LDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQL-GWPTL--FCHSLEVDEDGMITGYDLRQPDGKRQAVKALKS 142 (205)
T ss_pred CCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHc-CCchh--hcceEEECCCCeEECccccccchHHHHHHHHHH
Confidence 47899999999999999 999999999999999999998 98877 554333221 12223344455667777777
Q ss_pred CCCcEEEEecChhhHHHHHHcCCeEEE
Q 022348 254 SEKDCLVVEDSVIGLQAATRAGMACVI 280 (298)
Q Consensus 254 ~~~~~~~vgD~~~Di~~a~~aG~~~v~ 280 (298)
.+++|++|||+.+|+++++++|+.+.+
T Consensus 143 ~~~~~v~iGDs~~D~~~~~aa~~~v~~ 169 (205)
T PRK13582 143 LGYRVIAAGDSYNDTTMLGEADAGILF 169 (205)
T ss_pred hCCeEEEEeCCHHHHHHHHhCCCCEEE
Confidence 789999999999999999999997643
No 63
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.76 E-value=5.4e-18 Score=128.58 Aligned_cols=101 Identities=30% Similarity=0.484 Sum_probs=91.1
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCC----------------CCCH
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQK----------------KPDP 241 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~----------------KP~~ 241 (298)
..++|++.++|+.|+++|++++++||+....+...++.+ ++..+ ++.++..+..... ||++
T Consensus 23 ~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~-~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (139)
T cd01427 23 LELYPGVKEALKELKEKGIKLALATNKSRREVLELLEEL-GLDDY--FDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNP 99 (139)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHc-CCchh--hhheeccchhhhhcccccccccccccccCCCCH
Confidence 479999999999999999999999999999999999988 88766 7888877655544 9999
Q ss_pred HHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEE
Q 022348 242 SIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVIT 281 (298)
Q Consensus 242 ~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~ 281 (298)
..+..++++++..++++++|||+.+|+++++.+|+.++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i~v 139 (139)
T cd01427 100 DKLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVAV 139 (139)
T ss_pred HHHHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCceeeC
Confidence 9999999999999999999999999999999999998763
No 64
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.76 E-value=5.2e-17 Score=131.73 Aligned_cols=105 Identities=26% Similarity=0.280 Sum_probs=87.2
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCC-------CC---CCCCCHHHHHHH
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDD-------VK---QKKPDPSIYVTA 247 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~-------~~---~~KP~~~~~~~~ 247 (298)
..++||+.++++.|+++|++++|+|++....++.+.+.+ |++.. +...+..++ .+ .++-+......+
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~l-g~d~~--~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~ 152 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERL-GIDYV--VANELEIDDGKLTGRVVGPICDGEGKAKALREL 152 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHh-CCchh--eeeEEEEeCCEEeceeeeeecCcchHHHHHHHH
Confidence 579999999999999999999999999999999999998 99876 444443333 11 223356788899
Q ss_pred HHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCCC
Q 022348 248 AKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSS 285 (298)
Q Consensus 248 ~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~ 285 (298)
++++|++++++++|||+.||+.|.+.+|.+.++...+.
T Consensus 153 ~~~~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n~~~~ 190 (212)
T COG0560 153 AAELGIPLEETVAYGDSANDLPMLEAAGLPIAVNPKPK 190 (212)
T ss_pred HHHcCCCHHHeEEEcCchhhHHHHHhCCCCeEeCcCHH
Confidence 99999999999999999999999999999976655543
No 65
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.75 E-value=7.3e-17 Score=130.29 Aligned_cols=106 Identities=16% Similarity=0.144 Sum_probs=81.0
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcc--eEE------eCCCCCCCCCCHHHHHHHHH
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLD--CFL------AGDDVKQKKPDPSIYVTAAK 249 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd--~v~------~~~~~~~~KP~~~~~~~~~~ 249 (298)
+.++||+.++++.|+++| +++|+|++....+..+++.+ |++.+ |. ..+ ++... ..+|.+..+...++
T Consensus 67 i~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~l-gi~~~--~an~l~~~~~g~~tG~~~-~~~~~K~~~l~~l~ 141 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQL-GFPTL--LCHKLEIDDSDRVVGYQL-RQKDPKRQSVIAFK 141 (203)
T ss_pred CCCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHc-CCchh--hceeeEEecCCeeECeee-cCcchHHHHHHHHH
Confidence 479999999999999985 99999999999999999998 99877 44 222 22222 34555555454556
Q ss_pred HhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCCCchhHhh
Q 022348 250 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQVR 291 (298)
Q Consensus 250 ~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~~~ 291 (298)
+.|. +|++|||+.||+.+++.+|.++++...+...++-.
T Consensus 142 ~~~~---~~v~vGDs~nDl~ml~~Ag~~ia~~ak~~~~~~~~ 180 (203)
T TIGR02137 142 SLYY---RVIAAGDSYNDTTMLSEAHAGILFHAPENVIREFP 180 (203)
T ss_pred hhCC---CEEEEeCCHHHHHHHHhCCCCEEecCCHHHHHhCC
Confidence 6664 79999999999999999999988776665554433
No 66
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.74 E-value=8.8e-17 Score=129.06 Aligned_cols=95 Identities=13% Similarity=0.092 Sum_probs=79.6
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCC--------------------CCCC
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDD--------------------VKQK 237 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~--------------------~~~~ 237 (298)
..++||+.++|+.|+++|++++|+||+....++..++.+ ++..+ |+.+++++. ...+
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~-~l~~~--f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 147 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGI-GEKDV--FIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCG 147 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHc-CChhh--eeEEeccCceECCCCcEEEecCCCCccCcCCCC
Confidence 479999999999999999999999999999999999888 88887 888886532 1233
Q ss_pred CCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeE
Q 022348 238 KPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMAC 278 (298)
Q Consensus 238 KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~ 278 (298)
.+++.+++.+.++. +++++||||+.+|+++|+.+++-+
T Consensus 148 ~~K~~~~~~~~~~~---~~~~i~iGD~~~D~~aa~~~d~~~ 185 (188)
T TIGR01489 148 CCKGKVIHKLSEPK---YQHIIYIGDGVTDVCPAKLSDVVF 185 (188)
T ss_pred CCHHHHHHHHHhhc---CceEEEECCCcchhchHhcCCccc
Confidence 34577888887665 789999999999999999997643
No 67
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.74 E-value=4.5e-17 Score=128.24 Aligned_cols=100 Identities=20% Similarity=0.321 Sum_probs=81.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCC-hhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCc
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAAT-KSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKD 257 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~-~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~ 257 (298)
.++||+.++|+.|++.|++++|+||+. ...+...++.+ ++..+ ....||+|++|..+++++|+++++
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~-gl~~~-----------~~~~KP~p~~~~~~l~~~~~~~~~ 110 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKAL-GIPVL-----------PHAVKPPGCAFRRAHPEMGLTSEQ 110 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHc-CCEEE-----------cCCCCCChHHHHHHHHHcCCCHHH
Confidence 478899999999999999999999998 45555555554 55422 134699999999999999999999
Q ss_pred EEEEecCh-hhHHHHHHcCCeEEEEc-CCCchhHh
Q 022348 258 CLVVEDSV-IGLQAATRAGMACVITY-TSSTAEQV 290 (298)
Q Consensus 258 ~~~vgD~~-~Di~~a~~aG~~~v~~~-~~~~~~~~ 290 (298)
|+||||+. .|+++|+++|+.+|++. +..+.+.+
T Consensus 111 ~l~IGDs~~~Di~aA~~aGi~~i~v~~g~~~~~~~ 145 (170)
T TIGR01668 111 VAVVGDRLFTDVMGGNRNGSYTILVEPLVHPDQWF 145 (170)
T ss_pred EEEECCcchHHHHHHHHcCCeEEEEccCcCCcccc
Confidence 99999998 69999999999999764 44444433
No 68
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.73 E-value=8.3e-18 Score=143.19 Aligned_cols=109 Identities=15% Similarity=0.192 Sum_probs=84.2
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhHH-HHHHHHhCCccccCcceEE---eCCCCCCCCCCHHHHHHHHHHhCCCC
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVI-LCLENLIGMERFEGLDCFL---AGDDVKQKKPDPSIYVTAAKRLGISE 255 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~-~~l~~~~~l~~~~~fd~v~---~~~~~~~~KP~~~~~~~~~~~lgi~~ 255 (298)
-++++.++++.|+++|. ++|+||.+..... ..+.. ++...+ |+.+. ..+....+||+|.+|..+++++|+.|
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~-~~~g~~--~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~ 219 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRT-PGTGSL--VAAIETASGRQPLVVGKPSPYMFECITENFSIDP 219 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcc-cChHHH--HHHHHHHhCCceeccCCCCHHHHHHHHHHhCCCh
Confidence 47899999999999887 7899998864331 11222 255554 45443 23445678999999999999999999
Q ss_pred CcEEEEecCh-hhHHHHHHcCCeEEEE-cCCCchhHhhh
Q 022348 256 KDCLVVEDSV-IGLQAATRAGMACVIT-YTSSTAEQVRI 292 (298)
Q Consensus 256 ~~~~~vgD~~-~Di~~a~~aG~~~v~~-~~~~~~~~~~~ 292 (298)
++|+||||+. .|+++|+++|+.++++ ||....+++..
T Consensus 220 ~~~lmIGD~~~tDI~~A~~aGi~si~V~~G~~~~~~l~~ 258 (279)
T TIGR01452 220 ARTLMVGDRLETDILFGHRCGMTTVLVLSGVSRLEEAQE 258 (279)
T ss_pred hhEEEECCChHHHHHHHHHcCCcEEEECCCCCCHHHHHh
Confidence 9999999996 8999999999999955 66666776654
No 69
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.72 E-value=3.9e-16 Score=126.84 Aligned_cols=104 Identities=19% Similarity=0.130 Sum_probs=84.9
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceE------EeCCC---CCCCCCCHHHHHHHHH
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCF------LAGDD---VKQKKPDPSIYVTAAK 249 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v------~~~~~---~~~~KP~~~~~~~~~~ 249 (298)
.++||+.++++.++++|++++|+|++....++..++.+ +++.+.+.+.. +++.. ...++++...++.+++
T Consensus 87 ~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~l-g~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~ 165 (202)
T TIGR01490 87 ILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARIL-GIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELLA 165 (202)
T ss_pred hccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHc-CCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHHH
Confidence 58999999999999999999999999999999999887 88876322112 22211 1234666778999999
Q ss_pred HhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcC
Q 022348 250 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYT 283 (298)
Q Consensus 250 ~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~ 283 (298)
+.++++++|+++||+.+|+++++.+|..+++.++
T Consensus 166 ~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~~~ 199 (202)
T TIGR01490 166 EEQIDLKDSYAYGDSISDLPLLSLVGHPYVVNPD 199 (202)
T ss_pred HcCCCHHHcEeeeCCcccHHHHHhCCCcEEeCCC
Confidence 9999999999999999999999999999876554
No 70
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.72 E-value=1.7e-16 Score=129.94 Aligned_cols=99 Identities=19% Similarity=0.197 Sum_probs=79.9
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc-cccCcceEEeCCCCCCCCCCHHHH----------HH
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME-RFEGLDCFLAGDDVKQKKPDPSIY----------VT 246 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~-~~~~fd~v~~~~~~~~~KP~~~~~----------~~ 246 (298)
..++||+.++++.|+++|++++|+|++....++.+++.+ +.. .+..-+.++.++.+...||.|..+ ..
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~ 147 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGI-VEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPS 147 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhh-CCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHH
Confidence 579999999999999999999999999999899889887 432 221114555555556667776654 47
Q ss_pred HHHHhCCCCCcEEEEecChhhHHHHHHcCCe
Q 022348 247 AAKRLGISEKDCLVVEDSVIGLQAATRAGMA 277 (298)
Q Consensus 247 ~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~ 277 (298)
++++++..+++++||||+.+|+.+|+.||+.
T Consensus 148 ~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~~ 178 (214)
T TIGR03333 148 LIRKLSEPNDYHIVIGDSVTDVEAAKQSDLC 178 (214)
T ss_pred HHHHHhhcCCcEEEEeCCHHHHHHHHhCCee
Confidence 7788888889999999999999999999983
No 71
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.71 E-value=3.8e-16 Score=124.18 Aligned_cols=95 Identities=23% Similarity=0.191 Sum_probs=77.4
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCC------------CCCCCCCCHHHH
Q 022348 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGD------------DVKQKKPDPSIY 244 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~------------~~~~~KP~~~~~ 244 (298)
.+.++||+.++++.++++|++++|+|++....++..++.+ ++..+ |...+..+ ....+..++..+
T Consensus 71 ~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~-g~~~~--~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l 147 (177)
T TIGR01488 71 QVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKL-GIDDV--FANRLEFDDNGLLTGPIEGQVNPEGECKGKVL 147 (177)
T ss_pred cCCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc-CCchh--eeeeEEECCCCEEeCccCCcccCCcchHHHHH
Confidence 3468999999999999999999999999999999999998 88866 44333322 112234456788
Q ss_pred HHHHHHhCCCCCcEEEEecChhhHHHHHHc
Q 022348 245 VTAAKRLGISEKDCLVVEDSVIGLQAATRA 274 (298)
Q Consensus 245 ~~~~~~lgi~~~~~~~vgD~~~Di~~a~~a 274 (298)
+.+++++|++++++++|||+.+|+.+++.+
T Consensus 148 ~~~~~~~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 148 KELLEESKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred HHHHHHhCCCHHHEEEEeCCHHHHHHHhcC
Confidence 888899999999999999999999999864
No 72
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.70 E-value=3.1e-16 Score=135.55 Aligned_cols=101 Identities=19% Similarity=0.285 Sum_probs=84.1
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCC---------------hhhHHHHHHHHhCCccccCcceEE-e----CCCCCCC
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAAT---------------KSSVILCLENLIGMERFEGLDCFL-A----GDDVKQK 237 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~---------------~~~~~~~l~~~~~l~~~~~fd~v~-~----~~~~~~~ 237 (298)
..++||+.++|.+|+++|++++|+||.+ ...+..+++.+ ++. |+.++ + +++.+..
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~-gl~----fd~i~i~~~~~sd~~~~r 103 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQ-GIK----FDEVLICPHFPEDNCSCR 103 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHc-CCc----eeeEEEeCCcCcccCCCC
Confidence 3799999999999999999999999952 23344556665 663 55554 3 3566788
Q ss_pred CCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcC
Q 022348 238 KPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYT 283 (298)
Q Consensus 238 KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~ 283 (298)
||+|.++..+++++++.+++++||||+.+|+++|+++|+++|+++.
T Consensus 104 KP~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I~v~~ 149 (354)
T PRK05446 104 KPKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGIRYAR 149 (354)
T ss_pred CCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEEEEEC
Confidence 9999999999999999999999999999999999999999998744
No 73
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.70 E-value=4.1e-16 Score=127.83 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=77.3
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCC----hhhHHHHHHHHhCC--ccccCcceEEeCCCCCCCCCCHHHHHHHHHHh
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAAT----KSSVILCLENLIGM--ERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRL 251 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~----~~~~~~~l~~~~~l--~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l 251 (298)
..++||+.++|+.|+++|++++++||.. .......++.+ ++ ..+ |+.+++++.. .||++.. .++++
T Consensus 113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~-gip~~~~--f~vil~gd~~--~K~~K~~---~l~~~ 184 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDF-HIPADNM--NPVIFAGDKP--GQYTKTQ---WLKKK 184 (237)
T ss_pred CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHc-CCCcccc--eeEEEcCCCC--CCCCHHH---HHHhc
Confidence 5799999999999999999999999964 33445555556 88 666 7888888753 5676653 55677
Q ss_pred CCCCCcEEEEecChhhHHHHHHcCCeEE-EEcCCCc
Q 022348 252 GISEKDCLVVEDSVIGLQAATRAGMACV-ITYTSST 286 (298)
Q Consensus 252 gi~~~~~~~vgD~~~Di~~a~~aG~~~v-~~~~~~~ 286 (298)
|+ ++||||+.+|+.+|++||+.++ +.|+.+.
T Consensus 185 ~i----~I~IGDs~~Di~aA~~AGi~~I~v~~G~~~ 216 (237)
T PRK11009 185 NI----RIFYGDSDNDITAAREAGARGIRILRAANS 216 (237)
T ss_pred CC----eEEEcCCHHHHHHHHHcCCcEEEEecCCCC
Confidence 76 8999999999999999999999 6666554
No 74
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.70 E-value=1e-16 Score=120.05 Aligned_cols=88 Identities=17% Similarity=0.147 Sum_probs=77.1
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCC-ChhhHHHHHHHHhC-------CccccCcceEEeCCCCCCCCCCHHHHHHHHHH
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAA-TKSSVILCLENLIG-------MERFEGLDCFLAGDDVKQKKPDPSIYVTAAKR 250 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~-~~~~~~~~l~~~~~-------l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~ 250 (298)
.++||+.++|+.|+++|++++|+||+ ........++.+ + +..+ |+.++++++ +|+|++|..++++
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~-~~~~~i~~l~~~--f~~~~~~~~----~pkp~~~~~a~~~ 101 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIF-EDFGIIFPLAEY--FDPLTIGYW----LPKSPRLVEIALK 101 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhc-cccccchhhHhh--hhhhhhcCC----CcHHHHHHHHHHH
Confidence 48899999999999999999999999 777777778776 6 6777 888887753 5889999999999
Q ss_pred hC--CCCCcEEEEecChhhHHHHHH
Q 022348 251 LG--ISEKDCLVVEDSVIGLQAATR 273 (298)
Q Consensus 251 lg--i~~~~~~~vgD~~~Di~~a~~ 273 (298)
+| +.|++|+||||+..|++..+.
T Consensus 102 lg~~~~p~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 102 LNGVLKPKSILFVDDRPDNNEEVDY 126 (128)
T ss_pred hcCCCCcceEEEECCCHhHHHHHHh
Confidence 99 999999999999999887654
No 75
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.69 E-value=4.2e-16 Score=127.76 Aligned_cols=89 Identities=28% Similarity=0.417 Sum_probs=78.1
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcE
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDC 258 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~ 258 (298)
.++||+.++|+.|++.|++++++|+.....+..+.+.+ |+.. .++.+... +||++.+|..+++++++.+++|
T Consensus 127 ~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~l-gi~~-----~~v~a~~~--~kP~~k~~~~~i~~l~~~~~~v 198 (215)
T PF00702_consen 127 PLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQL-GIFD-----SIVFARVI--GKPEPKIFLRIIKELQVKPGEV 198 (215)
T ss_dssp EBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHT-TSCS-----EEEEESHE--TTTHHHHHHHHHHHHTCTGGGE
T ss_pred cchhhhhhhhhhhhccCcceeeeecccccccccccccc-cccc-----cccccccc--ccccchhHHHHHHHHhcCCCEE
Confidence 58899999999999999999999999999999999988 8843 22222211 7999999999999999999999
Q ss_pred EEEecChhhHHHHHHcC
Q 022348 259 LVVEDSVIGLQAATRAG 275 (298)
Q Consensus 259 ~~vgD~~~Di~~a~~aG 275 (298)
+||||+.||+.|+++||
T Consensus 199 ~~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 199 AMVGDGVNDAPALKAAG 215 (215)
T ss_dssp EEEESSGGHHHHHHHSS
T ss_pred EEEccCHHHHHHHHhCc
Confidence 99999999999999997
No 76
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.69 E-value=3.4e-17 Score=127.75 Aligned_cols=92 Identities=20% Similarity=0.286 Sum_probs=80.3
Q ss_pred HHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChh
Q 022348 187 LMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVI 266 (298)
Q Consensus 187 ~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~ 266 (298)
.+..|++.|++++|+||.....++..++.+ ++..+ |+. .||+|+.++.+++++|+++++|++|||+.+
T Consensus 42 ~~~~L~~~Gi~laIiT~k~~~~~~~~l~~l-gi~~~--f~~---------~kpkp~~~~~~~~~l~~~~~ev~~iGD~~n 109 (169)
T TIGR02726 42 GVIVLQLCGIDVAIITSKKSGAVRHRAEEL-KIKRF--HEG---------IKKKTEPYAQMLEEMNISDAEVCYVGDDLV 109 (169)
T ss_pred HHHHHHHCCCEEEEEECCCcHHHHHHHHHC-CCcEE--Eec---------CCCCHHHHHHHHHHcCcCHHHEEEECCCHH
Confidence 466788899999999999999999999998 99877 553 279999999999999999999999999999
Q ss_pred hHHHHHHcCCeEEEEcCCCchhHh
Q 022348 267 GLQAATRAGMACVITYTSSTAEQV 290 (298)
Q Consensus 267 Di~~a~~aG~~~v~~~~~~~~~~~ 290 (298)
|+++++.+|+..++-+.....++.
T Consensus 110 Di~~~~~ag~~~am~nA~~~lk~~ 133 (169)
T TIGR02726 110 DLSMMKRVGLAVAVGDAVADVKEA 133 (169)
T ss_pred HHHHHHHCCCeEECcCchHHHHHh
Confidence 999999999998877766444443
No 77
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.69 E-value=2.8e-17 Score=127.26 Aligned_cols=86 Identities=13% Similarity=0.217 Sum_probs=75.7
Q ss_pred HHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChh
Q 022348 187 LMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVI 266 (298)
Q Consensus 187 ~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~ 266 (298)
++++|+++|++++|+||.....+...++.+ ++..+ |+. .||+|+++..+++++|+++++|+||||+.+
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~-gi~~~--~~~---------~~~k~~~~~~~~~~~~~~~~~~~~vGDs~~ 103 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTL-GITHL--YQG---------QSNKLIAFSDILEKLALAPENVAYIGDDLI 103 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHc-CCCEE--Eec---------ccchHHHHHHHHHHcCCCHHHEEEECCCHH
Confidence 799999999999999999999899999998 88776 442 278899999999999999999999999999
Q ss_pred hHHHHHHcCCeEEEEcCC
Q 022348 267 GLQAATRAGMACVITYTS 284 (298)
Q Consensus 267 Di~~a~~aG~~~v~~~~~ 284 (298)
|+++++.+|+...+.+..
T Consensus 104 D~~~~~~ag~~~~v~~~~ 121 (154)
T TIGR01670 104 DWPVMEKVGLSVAVADAH 121 (154)
T ss_pred HHHHHHHCCCeEecCCcC
Confidence 999999999985444443
No 78
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.66 E-value=3.2e-16 Score=131.64 Aligned_cols=205 Identities=13% Similarity=0.128 Sum_probs=124.8
Q ss_pred ccEEEEecCCccccchh----HH--HHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChh---------hHHH
Q 022348 67 LQALIFDCDGVIIESEH----LH--RQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKP---------KMRW 131 (298)
Q Consensus 67 ~k~viFD~DGTL~d~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---------~~~~ 131 (298)
+|+|+||+||||++... .. ...+.+.+++.|++....+++.........+.+ ...|-... ....
T Consensus 1 ~k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l-~~~g~~~~~~~i~ts~~~~~~ 79 (257)
T TIGR01458 1 VKGVLLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERL-QRLGFDISEDEVFTPAPAARQ 79 (257)
T ss_pred CCEEEEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH-HHcCCCCCHHHeEcHHHHHHH
Confidence 47999999999998654 22 223344456677766655555444333333333 23333211 2345
Q ss_pred HHHHcCCCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhc--CCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhH
Q 022348 132 YFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKS--GTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSV 209 (298)
Q Consensus 132 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~ 209 (298)
++.+.+.. .+.... +....+ +..+.. .+. ...+-. .....++++.+.++.|++.+.+++++||.+....
T Consensus 80 ~l~~~~~~---~~~~g~--~~~~~~-~~~~~~--~~~-~~Vv~g~~~~~~~y~~l~~a~~~L~~~~~~~~iatn~~~~~~ 150 (257)
T TIGR01458 80 LLEEKQLR---PMLLVD--DRVLPD-FDGIDT--SDP-NCVVMGLAPEHFSYQILNQAFRLLLDGAKPLLIAIGKGRYYK 150 (257)
T ss_pred HHHhcCCC---eEEEEC--ccHHHH-hccCCC--CCC-CEEEEecccCccCHHHHHHHHHHHHcCCCCEEEEeCCCCCCc
Confidence 56554321 111000 111111 110000 000 000000 0112468899999999999999999999887766
Q ss_pred HHHHHHHhCCccccCcceEEeCCCC---CCCCCCHHHHHHHHHHhCCCCCcEEEEecCh-hhHHHHHHcCCeEEEEcCC
Q 022348 210 ILCLENLIGMERFEGLDCFLAGDDV---KQKKPDPSIYVTAAKRLGISEKDCLVVEDSV-IGLQAATRAGMACVITYTS 284 (298)
Q Consensus 210 ~~~l~~~~~l~~~~~fd~v~~~~~~---~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~-~Di~~a~~aG~~~v~~~~~ 284 (298)
......+ ++..+ |+.+..+... ..+||+|.+|+.+++++|++|++++||||+. +|+.+|+++|+.++++..+
T Consensus 151 ~~~~~~~-g~g~~--~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~~G~~~i~v~~G 226 (257)
T TIGR01458 151 RKDGLAL-DVGPF--VTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAVMIGDDCRDDVGGAQDCGMRGIQVRTG 226 (257)
T ss_pred CCCCCCC-CchHH--HHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhEEEECCCcHHHHHHHHHcCCeEEEECCC
Confidence 5555444 67666 6655544332 2479999999999999999999999999997 8999999999999977554
No 79
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.66 E-value=6.2e-16 Score=133.38 Aligned_cols=100 Identities=22% Similarity=0.224 Sum_probs=91.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCcc-ccCcceEEeCC-------CCCCCCCCHHHHHHHHHH
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMER-FEGLDCFLAGD-------DVKQKKPDPSIYVTAAKR 250 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~-~~~fd~v~~~~-------~~~~~KP~~~~~~~~~~~ 250 (298)
.++||+.++|+.|+++|++++++||......+..++.+ ++.. + |+.+++.+ +.+..||+|.++..++++
T Consensus 187 ~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l-~~~~~~--f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~ 263 (300)
T PHA02530 187 KPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWL-RQTDIW--FDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWE 263 (300)
T ss_pred CCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHH-HHcCCc--hhhhhCCcchhhhcccCCCCCCcHHHHHHHHHH
Confidence 68999999999999999999999999999999999998 8875 6 88888887 455679999999999999
Q ss_pred hCC-CCCcEEEEecChhhHHHHHHcCCeEEEE
Q 022348 251 LGI-SEKDCLVVEDSVIGLQAATRAGMACVIT 281 (298)
Q Consensus 251 lgi-~~~~~~~vgD~~~Di~~a~~aG~~~v~~ 281 (298)
++. .+++|++|||+.+|+++|+++|+.++.+
T Consensus 264 ~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v 295 (300)
T PHA02530 264 KIAPKYDVLLAVDDRDQVVDMWRRIGLECWQV 295 (300)
T ss_pred HhccCceEEEEEcCcHHHHHHHHHhCCeEEEe
Confidence 998 5799999999999999999999999966
No 80
>PRK11590 hypothetical protein; Provisional
Probab=99.65 E-value=1.5e-14 Score=118.18 Aligned_cols=188 Identities=10% Similarity=-0.034 Sum_probs=108.4
Q ss_pred CccEEEEecCCccccchhHHHHHHHHHH-hhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHHHHHHcCCC--CCc
Q 022348 66 SLQALIFDCDGVIIESEHLHRQAYNDAF-SHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWP--SST 142 (298)
Q Consensus 66 ~~k~viFD~DGTL~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~--~~~ 142 (298)
.-|+++||+||||++.. ....|...+ +++++.... ...+...+|.+......... .+.. ...
T Consensus 5 ~~k~~iFD~DGTL~~~d--~~~~~~~~~~~~~g~~~~~------------~~~~~~~ig~~l~~~~~~~~-~~~~~~~~~ 69 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD--MFGSFLRYLLRRQPLNLLL------------VLPLLPVIGLGLLVKGRAAR-WPMSLLLWG 69 (211)
T ss_pred cceEEEEecCCCCcccc--hHHHHHHHHHHhcchhhHH------------HhHHHHHhccCcccchhhhh-hhHHHHHHH
Confidence 45799999999999443 445566666 777754322 23444455554433211100 0000 000
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHH-HHHHHCCCeEEEEeCCChhhHHHHHHHHhCCcc
Q 022348 143 IFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLM-DEAKAAGKKVAVCSAATKSSVILCLENLIGMER 221 (298)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l-~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~ 221 (298)
.+ ...+.++ .+.+.+.+.+.|... ..++||+.++| +.|++.|++++|+||.....++.+++.+ ++..
T Consensus 70 ~~--~g~~~~~----~~~~~~~f~~~~~~~-----~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l-~~~~ 137 (211)
T PRK11590 70 CT--FGHSEAR----LQALEADFVRWFRDN-----VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDT-PWLP 137 (211)
T ss_pred HH--cCCCHHH----HHHHHHHHHHHHHHh-----CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHc-cccc
Confidence 00 0001111 223333333334332 36799999999 5788899999999999999999999887 6421
Q ss_pred ccCcceEEeCC--------CCC-CCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCC
Q 022348 222 FEGLDCFLAGD--------DVK-QKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 284 (298)
Q Consensus 222 ~~~fd~v~~~~--------~~~-~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~ 284 (298)
.+.+++.. -.+ .+.-. +=...+.+.+|.+...+++.|||.+|+.+.+.+|.+.++.++.
T Consensus 138 ---~~~~i~t~l~~~~tg~~~g~~c~g~-~K~~~l~~~~~~~~~~~~aY~Ds~~D~pmL~~a~~~~~vnp~~ 205 (211)
T PRK11590 138 ---RVNLIASQMQRRYGGWVLTLRCLGH-EKVAQLERKIGTPLRLYSGYSDSKQDNPLLYFCQHRWRVTPRG 205 (211)
T ss_pred ---cCceEEEEEEEEEccEECCccCCCh-HHHHHHHHHhCCCcceEEEecCCcccHHHHHhCCCCEEECccH
Confidence 12222221 111 11111 1122333445777788999999999999999999997665443
No 81
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.64 E-value=1.5e-15 Score=113.85 Aligned_cols=91 Identities=27% Similarity=0.412 Sum_probs=79.8
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEE
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCL 259 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~ 259 (298)
.-|++.+-+.++++.|+++.|+||+....+...++.+ +++ .+. ...||.+..|+.+++++++++++|+
T Consensus 47 ~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l-~v~------fi~-----~A~KP~~~~fr~Al~~m~l~~~~vv 114 (175)
T COG2179 47 ATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKL-GVP------FIY-----RAKKPFGRAFRRALKEMNLPPEEVV 114 (175)
T ss_pred CCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhc-CCc------eee-----cccCccHHHHHHHHHHcCCChhHEE
Confidence 5567778888999999999999999999898888877 664 332 3579999999999999999999999
Q ss_pred EEecCh-hhHHHHHHcCCeEEEEc
Q 022348 260 VVEDSV-IGLQAATRAGMACVITY 282 (298)
Q Consensus 260 ~vgD~~-~Di~~a~~aG~~~v~~~ 282 (298)
||||.. .|+.++..+|+.||.+-
T Consensus 115 mVGDqL~TDVlggnr~G~~tIlV~ 138 (175)
T COG2179 115 MVGDQLFTDVLGGNRAGMRTILVE 138 (175)
T ss_pred EEcchhhhhhhcccccCcEEEEEE
Confidence 999999 59999999999999664
No 82
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.60 E-value=7.5e-15 Score=124.88 Aligned_cols=207 Identities=12% Similarity=0.150 Sum_probs=109.6
Q ss_pred CccEEEEecCCccccchhHHHHHHHHHH---hhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHHHHHHcC---C-
Q 022348 66 SLQALIFDCDGVIIESEHLHRQAYNDAF---SHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHG---W- 138 (298)
Q Consensus 66 ~~k~viFD~DGTL~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g---~- 138 (298)
++|+|+||+||||++..........+++ ++.|+.....++|.+.......+.+ +...+ +...+| +
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l----~~~~~----~I~~NGa~i~d 73 (272)
T PRK10530 2 TYRVIALDLDGTLLTPKKTILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQAL----ALDTP----AICCNGTYLYD 73 (272)
T ss_pred CccEEEEeCCCceECCCCccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhc----CCCCC----EEEcCCcEEEe
Confidence 5899999999999987543323333444 4468888887777655433333222 11100 000011 0
Q ss_pred -CCCcccCCCCCCChhHHHHHHHHHHHHH----------------HHHHH---HHh---cCCCCCChhHHHHHHHHHHCC
Q 022348 139 -PSSTIFDNPPVTDDDQAKLIDLIQDWKT----------------ERYQQ---IIK---SGTVEPRPGVLRLMDEAKAAG 195 (298)
Q Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~---~~~---~~~~~~~pg~~~~l~~L~~~g 195 (298)
...+++.....+.+...++++.+.+... ..+.. ... ......++++.+++..++..+
T Consensus 74 ~~~~~~l~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (272)
T PRK10530 74 YQAKKVLEADPLPVQQALQVIEMLDEHQIHGLMYVDDAMLYEHPTGHVIRTLNWAQTLPPEQRPTFTQVDSLAQAARQVN 153 (272)
T ss_pred cCCCEEEEecCCCHHHHHHHHHHHHhCCcEEEEEcCCceEecCchHHHHHHhhhhhccchhcccceEEcccHHHHHhhcC
Confidence 0112223333444444444443332100 00000 000 001123566777777777777
Q ss_pred CeEEEEeCCCh-hhHHHHHHHH---hCCcccc-CcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHH
Q 022348 196 KKVAVCSAATK-SSVILCLENL---IGMERFE-GLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQA 270 (298)
Q Consensus 196 ~~i~i~S~~~~-~~~~~~l~~~---~~l~~~~-~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~ 270 (298)
..+.++++... .......+.+ .++.... .++. + +....+..++.+++.+++++|++++++++|||+.||++|
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~--ei~~~~~~K~~~l~~l~~~~gi~~~e~i~~GD~~NDi~m 230 (272)
T PRK10530 154 AIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQ-V--DIARKGNSKGKRLTQWVEAQGWSMKNVVAFGDNFNDISM 230 (272)
T ss_pred CcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCce-E--EEecCCCChHHHHHHHHHHcCCCHHHeEEeCCChhhHHH
Confidence 66667776442 1122222222 1332100 0111 1 122334456789999999999999999999999999999
Q ss_pred HHHcCCeEEEEcC
Q 022348 271 ATRAGMACVITYT 283 (298)
Q Consensus 271 a~~aG~~~v~~~~ 283 (298)
++.+|+.+++-++
T Consensus 231 ~~~ag~~vamgna 243 (272)
T PRK10530 231 LEAAGLGVAMGNA 243 (272)
T ss_pred HHhcCceEEecCc
Confidence 9999998666544
No 83
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.59 E-value=5.1e-15 Score=123.84 Aligned_cols=110 Identities=17% Similarity=0.152 Sum_probs=75.9
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHH--HHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCC
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVIL--CLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEK 256 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~--~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~ 256 (298)
..++.+...+..|+ +|.+ .++||.+...... .+-..+.+... ++...+.+.+..+||+|++|+.+++++|++++
T Consensus 121 ~~y~~l~~a~~~l~-~g~~-~i~tN~D~~~~~~~~~~~~~G~~~~~--i~~~~~~~~~~~gKP~~~~~~~~~~~~~~~~~ 196 (249)
T TIGR01457 121 IDYEKFATATLAIR-KGAH-FIGTNGDLAIPTERGLLPGNGSLITV--LEVATGVKPVYIGKPNAIIMEKAVEHLGTERE 196 (249)
T ss_pred CCHHHHHHHHHHHH-CCCe-EEEECCCCCCCCCCCCCCCcHHHHHH--HHHHhCCCccccCCChHHHHHHHHHHcCCCcc
Confidence 34556666677774 5776 8888977653311 00000011111 34444556666789999999999999999999
Q ss_pred cEEEEecCh-hhHHHHHHcCCeEEEEc-CCCchhHhhh
Q 022348 257 DCLVVEDSV-IGLQAATRAGMACVITY-TSSTAEQVRI 292 (298)
Q Consensus 257 ~~~~vgD~~-~Di~~a~~aG~~~v~~~-~~~~~~~~~~ 292 (298)
+++||||+. .|+.+|+++|+.++++. |....+++..
T Consensus 197 ~~~~VGD~~~~Di~~a~~~G~~~v~v~~G~~~~~~~~~ 234 (249)
T TIGR01457 197 ETLMVGDNYLTDIRAGIDAGIDTLLVHTGVTKAEEVAG 234 (249)
T ss_pred cEEEECCCchhhHHHHHHcCCcEEEEcCCCCCHHHHhc
Confidence 999999997 79999999999999664 4444555544
No 84
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.58 E-value=9.2e-14 Score=106.57 Aligned_cols=165 Identities=18% Similarity=0.206 Sum_probs=111.6
Q ss_pred cCCccEEEEecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHHHHHHcCCCCCcc
Q 022348 64 SQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTI 143 (298)
Q Consensus 64 ~~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~ 143 (298)
+.+.++|.||+|.|++.. +.+.++....|+ .+...+......++...++..+.+.
T Consensus 13 ~~~~~aVcFDvDSTvi~e-----EgIdelA~~~G~-------------~~~Va~~T~rAMng~~~F~eaL~~R------- 67 (227)
T KOG1615|consen 13 WRSADAVCFDVDSTVIQE-----EGIDELAAYCGV-------------GEAVAEVTRRAMNGEADFQEALAAR------- 67 (227)
T ss_pred HHhcCeEEEecCcchhHH-----hhHHHHHHHhCc-------------hHHHHHHHHHHhCCCCcHHHHHHHH-------
Confidence 346799999999999943 344555555564 3334455555566666666665432
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCcc--
Q 022348 144 FDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMER-- 221 (298)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~-- 221 (298)
-.+.+-........+......+.||+.++...|+++|.+++++|+++...+..+.+++ |++.
T Consensus 68 ---------------l~llqp~~~qv~~~v~~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~L-gi~~~n 131 (227)
T KOG1615|consen 68 ---------------LSLLQPLQVQVEQFVIKQKPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQL-GIPKSN 131 (227)
T ss_pred ---------------HHHhcccHHHHHHHHhcCCCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHh-CCcHhh
Confidence 1122222233334444567889999999999999999999999999999999999998 9985
Q ss_pred c------cCcceEEeC-CC-----CCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHH
Q 022348 222 F------EGLDCFLAG-DD-----VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATR 273 (298)
Q Consensus 222 ~------~~fd~v~~~-~~-----~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~ 273 (298)
. +.++.-+.+ +. -+.+| ++.+..+.+ |..-+.++||||+.+|+++..-
T Consensus 132 ~yAN~l~fd~~Gk~~gfd~~~ptsdsggK--a~~i~~lrk--~~~~~~~~mvGDGatDlea~~p 191 (227)
T KOG1615|consen 132 IYANELLFDKDGKYLGFDTNEPTSDSGGK--AEVIALLRK--NYNYKTIVMVGDGATDLEAMPP 191 (227)
T ss_pred hhhheeeeccCCcccccccCCccccCCcc--HHHHHHHHh--CCChheeEEecCCccccccCCc
Confidence 1 111222222 11 11234 557777766 7777899999999999998766
No 85
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.58 E-value=8e-15 Score=122.38 Aligned_cols=98 Identities=19% Similarity=0.257 Sum_probs=80.8
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceE--EeCCCCCCCCCCHHHHHHHHHHhCCC-CCc
Q 022348 181 RPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCF--LAGDDVKQKKPDPSIYVTAAKRLGIS-EKD 257 (298)
Q Consensus 181 ~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v--~~~~~~~~~KP~~~~~~~~~~~lgi~-~~~ 257 (298)
++++.++++.|+++|+++ |+||.+.......+..+ +...+ |..+ .+++....+||+|.+|+.+++++|.. +++
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~-~~g~~--~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~ 215 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRY-GAGYY--AELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNR 215 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEe-cccHH--HHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCccc
Confidence 689999999999999997 88999887665555554 66665 5544 45555568999999999999999975 578
Q ss_pred EEEEecC-hhhHHHHHHcCCeEEEEc
Q 022348 258 CLVVEDS-VIGLQAATRAGMACVITY 282 (298)
Q Consensus 258 ~~~vgD~-~~Di~~a~~aG~~~v~~~ 282 (298)
|+||||+ .+|+.+|+++|+.++++.
T Consensus 216 ~~~vGD~~~~Di~~a~~~G~~~i~v~ 241 (242)
T TIGR01459 216 MLMVGDSFYTDILGANRLGIDTALVL 241 (242)
T ss_pred EEEECCCcHHHHHHHHHCCCeEEEEe
Confidence 9999999 589999999999999764
No 86
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.58 E-value=7.3e-15 Score=117.10 Aligned_cols=82 Identities=15% Similarity=0.271 Sum_probs=71.8
Q ss_pred HHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChh
Q 022348 187 LMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVI 266 (298)
Q Consensus 187 ~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~ 266 (298)
.++.|+++|++++|+||.....+...++.+ ++..+ |+ + .++++..+..+++++|+++++|+||||+.+
T Consensus 56 ~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~l-gl~~~--f~----g-----~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~ 123 (183)
T PRK09484 56 GIRCLLTSGIEVAIITGRKSKLVEDRMTTL-GITHL--YQ----G-----QSNKLIAFSDLLEKLAIAPEQVAYIGDDLI 123 (183)
T ss_pred HHHHHHHCCCEEEEEeCCCcHHHHHHHHHc-CCcee--ec----C-----CCcHHHHHHHHHHHhCCCHHHEEEECCCHH
Confidence 566777899999999999999999999998 88766 44 1 356789999999999999999999999999
Q ss_pred hHHHHHHcCCeEEE
Q 022348 267 GLQAATRAGMACVI 280 (298)
Q Consensus 267 Di~~a~~aG~~~v~ 280 (298)
|+++++++|+.+++
T Consensus 124 D~~~a~~aG~~~~v 137 (183)
T PRK09484 124 DWPVMEKVGLSVAV 137 (183)
T ss_pred HHHHHHHCCCeEec
Confidence 99999999999654
No 87
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.55 E-value=9.5e-15 Score=112.37 Aligned_cols=95 Identities=21% Similarity=0.193 Sum_probs=86.7
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCcc-ccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCC
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMER-FEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEK 256 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~-~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~ 256 (298)
..++||+.++|.+|+ ++++++|+|++....++.+++.+ ++.. + |+.+++++++...||. |.++++++|++|+
T Consensus 44 v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l-~~~~~~--f~~i~~~~d~~~~KP~---~~k~l~~l~~~p~ 116 (148)
T smart00577 44 VKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLL-DPKKYF--GYRRLFRDECVFVKGK---YVKDLSLLGRDLS 116 (148)
T ss_pred EEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHh-CcCCCE--eeeEEECccccccCCe---EeecHHHcCCChh
Confidence 478999999999999 56999999999999999999998 7754 4 6999999999989987 8999999999999
Q ss_pred cEEEEecChhhHHHHHHcCCeEE
Q 022348 257 DCLVVEDSVIGLQAATRAGMACV 279 (298)
Q Consensus 257 ~~~~vgD~~~Di~~a~~aG~~~v 279 (298)
+|++|||+.+|+++++++|+.+-
T Consensus 117 ~~i~i~Ds~~~~~aa~~ngI~i~ 139 (148)
T smart00577 117 NVIIIDDSPDSWPFHPENLIPIK 139 (148)
T ss_pred cEEEEECCHHHhhcCccCEEEec
Confidence 99999999999999999998864
No 88
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.55 E-value=4.7e-14 Score=122.39 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=82.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHH----HhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCC
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLEN----LIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGIS 254 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~----~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~ 254 (298)
.+++|+.++|..|+++|++++|+|++....+...++. + ++..+ |+.+..+ +||+|+.+..+++++|+.
T Consensus 31 ~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~-~~~~~--f~~~~~~-----~~pk~~~i~~~~~~l~i~ 102 (320)
T TIGR01686 31 PLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFI-LQAED--FDARSIN-----WGPKSESLRKIAKKLNLG 102 (320)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCcccc-CcHHH--eeEEEEe-----cCchHHHHHHHHHHhCCC
Confidence 3688999999999999999999999999999999998 6 77766 7777554 689999999999999999
Q ss_pred CCcEEEEecChhhHHHHHHcCCe
Q 022348 255 EKDCLVVEDSVIGLQAATRAGMA 277 (298)
Q Consensus 255 ~~~~~~vgD~~~Di~~a~~aG~~ 277 (298)
+++++||||++.|+.++++++-.
T Consensus 103 ~~~~vfidD~~~d~~~~~~~lp~ 125 (320)
T TIGR01686 103 TDSFLFIDDNPAERANVKITLPV 125 (320)
T ss_pred cCcEEEECCCHHHHHHHHHHCCC
Confidence 99999999999999999998765
No 89
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.55 E-value=8e-14 Score=115.77 Aligned_cols=59 Identities=29% Similarity=0.508 Sum_probs=50.2
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCcEEEEecCh-hhHHHHHHcCCeEEEEcCCCc-hhHhhhc
Q 022348 235 KQKKPDPSIYVTAAKRLGISEKDCLVVEDSV-IGLQAATRAGMACVITYTSST-AEQVRII 293 (298)
Q Consensus 235 ~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~-~Di~~a~~aG~~~v~~~~~~~-~~~~~~~ 293 (298)
-.+||.+.+|+.++++++..+++++||||+. .||.+|+++||.++++.++.. .+++...
T Consensus 187 ~~GKP~~~i~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~~~~~~~~~ 247 (269)
T COG0647 187 VIGKPSPAIYEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVSSAEDLDRA 247 (269)
T ss_pred ccCCCCHHHHHHHHHHhCCCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCCChhhhhhh
Confidence 4679999999999999999999999999999 599999999999996655544 5555443
No 90
>PLN02645 phosphoglycolate phosphatase
Probab=99.54 E-value=3.1e-14 Score=122.99 Aligned_cols=104 Identities=10% Similarity=0.102 Sum_probs=75.6
Q ss_pred HHHHHHHHCCCeEEEEeCCChhh-HHHHHHHHhCCccccCcceEEeCCCCC---CCCCCHHHHHHHHHHhCCCCCcEEEE
Q 022348 186 RLMDEAKAAGKKVAVCSAATKSS-VILCLENLIGMERFEGLDCFLAGDDVK---QKKPDPSIYVTAAKRLGISEKDCLVV 261 (298)
Q Consensus 186 ~~l~~L~~~g~~i~i~S~~~~~~-~~~~l~~~~~l~~~~~fd~v~~~~~~~---~~KP~~~~~~~~~~~lgi~~~~~~~v 261 (298)
.....|+.++-..+|+||.+... ....+... +...+ |+.+..+.... .+||+|.+|..+++++|+++++++||
T Consensus 177 ~a~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~-g~g~~--~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~V 253 (311)
T PLN02645 177 YATLCIRENPGCLFIATNRDAVTHLTDAQEWA-GAGSM--VGAIKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICMV 253 (311)
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCCCCCCCCcc-chHHH--HHHHHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEEE
Confidence 34455654333588999988643 22222232 66666 67665554322 46999999999999999999999999
Q ss_pred ecCh-hhHHHHHHcCCeEEEE-cCCCchhHhhh
Q 022348 262 EDSV-IGLQAATRAGMACVIT-YTSSTAEQVRI 292 (298)
Q Consensus 262 gD~~-~Di~~a~~aG~~~v~~-~~~~~~~~~~~ 292 (298)
||+. +|+.+|+++|+.++++ +|..+.+++..
T Consensus 254 GD~~~~Di~~A~~aG~~~ilV~~G~~~~~~~~~ 286 (311)
T PLN02645 254 GDRLDTDILFGQNGGCKTLLVLSGVTSESMLLS 286 (311)
T ss_pred cCCcHHHHHHHHHcCCCEEEEcCCCCCHHHHHh
Confidence 9998 8999999999999965 66666666654
No 91
>PRK10444 UMP phosphatase; Provisional
Probab=99.54 E-value=3.8e-14 Score=118.07 Aligned_cols=63 Identities=19% Similarity=0.321 Sum_probs=53.0
Q ss_pred eCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecCh-hhHHHHHHcCCeEEEE-cCCCchhHhhh
Q 022348 230 AGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSV-IGLQAATRAGMACVIT-YTSSTAEQVRI 292 (298)
Q Consensus 230 ~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~-~Di~~a~~aG~~~v~~-~~~~~~~~~~~ 292 (298)
+.+....+||+|++|..+++++++++++|+||||+. .|+.+|+++|+.++++ +|....+++..
T Consensus 166 g~~~~~~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~G~~~~~~l~~ 230 (248)
T PRK10444 166 GRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSTLDDIDS 230 (248)
T ss_pred CCCccccCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEECCCCCCHHHHhc
Confidence 334445689999999999999999999999999997 7999999999999955 56666666654
No 92
>PRK08238 hypothetical protein; Validated
Probab=99.52 E-value=8.4e-13 Score=119.36 Aligned_cols=100 Identities=21% Similarity=0.264 Sum_probs=81.1
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCC
Q 022348 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEK 256 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~ 256 (298)
..+++||+.+++++++++|++++++|++....++.+++++ |+ ||.++++++....||+++.. .+.+.++ .+
T Consensus 70 ~lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~l-Gl-----Fd~Vigsd~~~~~kg~~K~~-~l~~~l~--~~ 140 (479)
T PRK08238 70 TLPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHL-GL-----FDGVFASDGTTNLKGAAKAA-ALVEAFG--ER 140 (479)
T ss_pred hCCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHc-CC-----CCEEEeCCCccccCCchHHH-HHHHHhC--cc
Confidence 4567899999999999999999999999999999988887 65 79999998877777766543 3445665 35
Q ss_pred cEEEEecChhhHHHHHHcCCeEEEEcCCC
Q 022348 257 DCLVVEDSVIGLQAATRAGMACVITYTSS 285 (298)
Q Consensus 257 ~~~~vgD~~~Di~~a~~aG~~~v~~~~~~ 285 (298)
+++++||+.+|+.+++.+|-..++..+..
T Consensus 141 ~~~yvGDS~~Dlp~~~~A~~av~Vn~~~~ 169 (479)
T PRK08238 141 GFDYAGNSAADLPVWAAARRAIVVGASPG 169 (479)
T ss_pred CeeEecCCHHHHHHHHhCCCeEEECCCHH
Confidence 68999999999999999996654444443
No 93
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.51 E-value=7.7e-13 Score=110.28 Aligned_cols=102 Identities=16% Similarity=0.168 Sum_probs=83.5
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceE------EeCCCCCCCCCCH--
Q 022348 170 QQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCF------LAGDDVKQKKPDP-- 241 (298)
Q Consensus 170 ~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v------~~~~~~~~~KP~~-- 241 (298)
...+....+.+.||+.++++.|+++|++++|+|++....++..++++ ++... +..+ +..+.+..++|.|
T Consensus 112 ~~~v~~~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~l-gl~~~--~~~IvSN~L~f~~dGvltG~~~P~i 188 (277)
T TIGR01544 112 KEIVAESDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQA-GVYHP--NVKVVSNFMDFDEDGVLKGFKGPLI 188 (277)
T ss_pred HHHHhhcCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHc-CCCCc--CceEEeeeEEECCCCeEeCCCCCcc
Confidence 33333346789999999999999999999999999999999999998 77644 4444 4344555667777
Q ss_pred -------HHHHHHHHHhC--CCCCcEEEEecChhhHHHHHHc
Q 022348 242 -------SIYVTAAKRLG--ISEKDCLVVEDSVIGLQAATRA 274 (298)
Q Consensus 242 -------~~~~~~~~~lg--i~~~~~~~vgD~~~Di~~a~~a 274 (298)
..++..++.++ +.+++|++|||+.+|+.||..+
T Consensus 189 ~~~~K~~~v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~ 230 (277)
T TIGR01544 189 HTFNKNHDVALRNTEYFNQLKDRSNIILLGDSQGDLRMADGV 230 (277)
T ss_pred cccccHHHHHHHHHHHhCccCCcceEEEECcChhhhhHhcCC
Confidence 67777888898 8899999999999999998776
No 94
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.49 E-value=5.7e-14 Score=116.06 Aligned_cols=91 Identities=15% Similarity=0.153 Sum_probs=62.1
Q ss_pred EEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCe
Q 022348 198 VAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMA 277 (298)
Q Consensus 198 i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~ 277 (298)
..+.+......+...++.+ +.... .+......+....+.++..+++.+++++|++++++++|||+.||++|++.+|+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~ 187 (225)
T TIGR01482 110 VKMRYGIDVDTVREIIKEL-GLNLV-AVDSGFDIHILPQGVNKGVAVKKLKEKLGIKPGETLVCGDSENDIDLFEVPGFG 187 (225)
T ss_pred EEEeecCCHHHHHHHHHhc-CceEE-EecCCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEEEECCCHhhHHHHHhcCce
Confidence 3455555555566666665 44211 000001112344566778899999999999999999999999999999999999
Q ss_pred EEEEcCCCchhHh
Q 022348 278 CVITYTSSTAEQV 290 (298)
Q Consensus 278 ~v~~~~~~~~~~~ 290 (298)
+++-+.....++.
T Consensus 188 vam~Na~~~~k~~ 200 (225)
T TIGR01482 188 VAVANAQPELKEW 200 (225)
T ss_pred EEcCChhHHHHHh
Confidence 8777765544443
No 95
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.49 E-value=2.9e-14 Score=118.26 Aligned_cols=87 Identities=20% Similarity=0.227 Sum_probs=60.7
Q ss_pred EEEEeCCChhhHHHHHHHHhCCccccCcceEEeC---CCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHc
Q 022348 198 VAVCSAATKSSVILCLENLIGMERFEGLDCFLAG---DDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRA 274 (298)
Q Consensus 198 i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~---~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~a 274 (298)
+.+.++.....+...++.+ +.. +..+... +-...+..++.+++.+++.+|++++++++|||+.||++|++.+
T Consensus 118 ~~~~~~~~~~~~~~~l~~~-~~~----~~~~~~~~~~ei~~~~~~Kg~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~a 192 (230)
T PRK01158 118 VALRRTVPVEEVRELLEEL-GLD----LEIVDSGFAIHIKSPGVNKGTGLKKLAELMGIDPEEVAAIGDSENDLEMFEVA 192 (230)
T ss_pred eeecccccHHHHHHHHHHc-CCc----EEEEecceEEEEeeCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhc
Confidence 4455554445555556554 321 2222211 2234556678999999999999999999999999999999999
Q ss_pred CCeEEEEcCCCchhH
Q 022348 275 GMACVITYTSSTAEQ 289 (298)
Q Consensus 275 G~~~v~~~~~~~~~~ 289 (298)
|+.+++-++....++
T Consensus 193 g~~vam~Na~~~vk~ 207 (230)
T PRK01158 193 GFGVAVANADEELKE 207 (230)
T ss_pred CceEEecCccHHHHH
Confidence 999877776654444
No 96
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.49 E-value=1.8e-13 Score=124.20 Aligned_cols=92 Identities=21% Similarity=0.302 Sum_probs=79.3
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCCh------------hhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHH
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATK------------SSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTA 247 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~------------~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~ 247 (298)
++||+.+.|+.|++.|++++|+||... ..+..+++.+ ++. |+.+++.+.....||+|.++..+
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~l-gip----fdviia~~~~~~RKP~pGm~~~a 272 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKL-GVP----FQVFIAIGAGFYRKPLTGMWDHL 272 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHc-CCc----eEEEEeCCCCCCCCCCHHHHHHH
Confidence 689999999999999999999999766 3466777777 664 78888888778889999999999
Q ss_pred HHHhC----CCCCcEEEEecChhhHHHHHHcCC
Q 022348 248 AKRLG----ISEKDCLVVEDSVIGLQAATRAGM 276 (298)
Q Consensus 248 ~~~lg----i~~~~~~~vgD~~~Di~~a~~aG~ 276 (298)
+++++ +++++++||||...|+++++.+|.
T Consensus 273 ~~~~~~~~~Id~~~S~~VGDaagr~~~g~~ag~ 305 (526)
T TIGR01663 273 KEEANDGTEIQEDDCFFVGDAAGRPANGKAAGK 305 (526)
T ss_pred HHhcCcccCCCHHHeEEeCCcccchHHHHhcCC
Confidence 99985 899999999999988887777664
No 97
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.48 E-value=1.1e-12 Score=102.05 Aligned_cols=98 Identities=28% Similarity=0.424 Sum_probs=79.9
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCC---------------hhhHHHHHHHHhCCccccCcceEEeCCC-----CCCCC
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAAT---------------KSSVILCLENLIGMERFEGLDCFLAGDD-----VKQKK 238 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~---------------~~~~~~~l~~~~~l~~~~~fd~v~~~~~-----~~~~K 238 (298)
.+.||+.+.+..|++.|++++++||.+ ...+...|+.. |+. ||.++.+-. ..+.|
T Consensus 31 ~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~-gv~----id~i~~Cph~p~~~c~cRK 105 (181)
T COG0241 31 QFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQ-GVK----IDGILYCPHHPEDNCDCRK 105 (181)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHc-CCc----cceEEECCCCCCCCCcccC
Confidence 588999999999999999999999932 12233444444 442 677766532 46789
Q ss_pred CCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEE
Q 022348 239 PDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVIT 281 (298)
Q Consensus 239 P~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~ 281 (298)
|++.++..+++++++++++.++|||...|+++|.++|++.+.+
T Consensus 106 P~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~ 148 (181)
T COG0241 106 PKPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKGVLV 148 (181)
T ss_pred CChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCCceEE
Confidence 9999999999999999999999999999999999999997743
No 98
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=99.45 E-value=7.1e-13 Score=102.68 Aligned_cols=108 Identities=19% Similarity=0.311 Sum_probs=76.8
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEe-CCChhhHHHHHHHHhCCc----------cccCcceEEeCCCCCCCCCCHHHHH
Q 022348 177 TVEPRPGVLRLMDEAKAAGKKVAVCS-AATKSSVILCLENLIGME----------RFEGLDCFLAGDDVKQKKPDPSIYV 245 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~g~~i~i~S-~~~~~~~~~~l~~~~~l~----------~~~~fd~v~~~~~~~~~KP~~~~~~ 245 (298)
.+.+||++.++|++|+.+|++++++| +.....++..|+.+ ++. .+ |+..-.. +-.+..-|+
T Consensus 43 ~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l-~i~~~~~~~~~~~~~--F~~~eI~-----~gsK~~Hf~ 114 (169)
T PF12689_consen 43 EVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLL-EIDDADGDGVPLIEY--FDYLEIY-----PGSKTTHFR 114 (169)
T ss_dssp EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHT-T-C----------CC--ECEEEES-----SS-HHHHHH
T ss_pred EEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhc-CCCccccccccchhh--cchhhee-----cCchHHHHH
Confidence 46899999999999999999999999 45677888999988 888 56 4443222 125678999
Q ss_pred HHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCCCchhHhhh
Q 022348 246 TAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQVRI 292 (298)
Q Consensus 246 ~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~~~~ 292 (298)
.+.++.|++.++++||+|-..+++.....|+.|+.+.++-+.+.+.+
T Consensus 115 ~i~~~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt~~~~~~ 161 (169)
T PF12689_consen 115 RIHRKTGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGLTWDEFER 161 (169)
T ss_dssp HHHHHH---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--HHHHHH
T ss_pred HHHHhcCCChhHEEEecCchhcceeeEecCcEEEEeCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999888777654
No 99
>PTZ00445 p36-lilke protein; Provisional
Probab=99.43 E-value=7.5e-13 Score=104.23 Aligned_cols=103 Identities=16% Similarity=0.173 Sum_probs=80.7
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhh---------------HHHHHHHHhCCccccCcceEEeCCC----------
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSS---------------VILCLENLIGMERFEGLDCFLAGDD---------- 233 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~---------------~~~~l~~~~~l~~~~~fd~v~~~~~---------- 233 (298)
.+.|+...++.+|++.|++++|+|-++... +...++.- +-. ...+.+++.+.
T Consensus 75 ~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s-~~~--~~i~~~~~yyp~~w~~p~~y~ 151 (219)
T PTZ00445 75 SVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKS-KCD--FKIKKVYAYYPKFWQEPSDYR 151 (219)
T ss_pred cCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhc-Ccc--ceeeeeeeeCCcccCChhhhh
Confidence 477888999999999999999999877643 34444432 111 11334444332
Q ss_pred -CCCCCCCHHH--H--HHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCC
Q 022348 234 -VKQKKPDPSI--Y--VTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 284 (298)
Q Consensus 234 -~~~~KP~~~~--~--~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~ 284 (298)
++..||+|.+ | +.+++++|+.|++|+||+|+..++++|++.|+.++.+.++
T Consensus 152 ~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~f~~~ 207 (219)
T PTZ00445 152 PLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGYIALHVTGN 207 (219)
T ss_pred hhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCCEEEEcCCh
Confidence 4677999999 9 9999999999999999999999999999999999977654
No 100
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=99.38 E-value=3.5e-11 Score=103.54 Aligned_cols=105 Identities=15% Similarity=0.152 Sum_probs=85.3
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhC-------CccccCcceEEeCCCC---------------
Q 022348 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIG-------MERFEGLDCFLAGDDV--------------- 234 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~-------l~~~~~fd~v~~~~~~--------------- 234 (298)
.+..+||+.++|+.|+++|++++|+||+....+...++.+.+ +..+ ||.|+++..-
T Consensus 182 yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~y--FD~IIt~a~KP~FF~~~~pf~~v~~ 259 (343)
T TIGR02244 182 YVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDY--FDVVIVDARKPGFFTEGRPFRQVDV 259 (343)
T ss_pred HhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhh--CcEEEeCCCCCcccCCCCceEEEeC
Confidence 356799999999999999999999999999999999999746 7778 9999887531
Q ss_pred --CCCCCCH------------HHHHHHHHHhCCCCCcEEEEecCh-hhHHHHH-HcCCeEEEEcC
Q 022348 235 --KQKKPDP------------SIYVTAAKRLGISEKDCLVVEDSV-IGLQAAT-RAGMACVITYT 283 (298)
Q Consensus 235 --~~~KP~~------------~~~~~~~~~lgi~~~~~~~vgD~~-~Di~~a~-~aG~~~v~~~~ 283 (298)
+..++.. --...+.+.+|+.++++++|||+. .|+..++ .+||.++++-.
T Consensus 260 ~~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~p 324 (343)
T TIGR02244 260 ETGSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIP 324 (343)
T ss_pred CCCcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEEch
Confidence 1111111 126677888999999999999999 5999998 89999996654
No 101
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.37 E-value=5e-12 Score=107.49 Aligned_cols=50 Identities=12% Similarity=0.043 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHhCCCC-CcEEEEecChhhHHHHHHcCCeEEEEcCCCchh
Q 022348 239 PDPSIYVTAAKRLGISE-KDCLVVEDSVIGLQAATRAGMACVITYTSSTAE 288 (298)
Q Consensus 239 P~~~~~~~~~~~lgi~~-~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~ 288 (298)
.+...++.+++.+|+++ +++++|||+.||++|++.+|+.+++-++....+
T Consensus 190 ~Kg~al~~l~~~~~i~~~~~v~~~GDs~NDi~m~~~ag~~vam~NA~~~~k 240 (273)
T PRK00192 190 DKGKAVRWLKELYRRQDGVETIALGDSPNDLPMLEAADIAVVVPGPDGPNP 240 (273)
T ss_pred CHHHHHHHHHHHHhccCCceEEEEcCChhhHHHHHhCCeeEEeCCCCCCCc
Confidence 56779999999999999 999999999999999999999999888876665
No 102
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.36 E-value=8.4e-13 Score=108.29 Aligned_cols=91 Identities=12% Similarity=0.086 Sum_probs=62.1
Q ss_pred EEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCe
Q 022348 198 VAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMA 277 (298)
Q Consensus 198 i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~ 277 (298)
+++++......+...++.. ++... ... ..-+-...+..+..+++.+++++|++++++++|||+.||++|++.+|+.
T Consensus 110 ~~~~~~~~~~~~~~~l~~~-~~~~~--~~~-~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~ml~~ag~~ 185 (215)
T TIGR01487 110 VIMREGKDVDEVREIIKER-GLNLV--DSG-FAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDIDLFRVVGFK 185 (215)
T ss_pred EEecCCccHHHHHHHHHhC-CeEEE--ecC-ceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHhCCCe
Confidence 4445555555555566554 44332 110 0012223455667799999999999999999999999999999999999
Q ss_pred EEEEcCCCchhHhhh
Q 022348 278 CVITYTSSTAEQVRI 292 (298)
Q Consensus 278 ~v~~~~~~~~~~~~~ 292 (298)
+++-++....++...
T Consensus 186 vam~na~~~~k~~A~ 200 (215)
T TIGR01487 186 VAVANADDQLKEIAD 200 (215)
T ss_pred EEcCCccHHHHHhCC
Confidence 888877655555443
No 103
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.35 E-value=1.7e-11 Score=104.09 Aligned_cols=59 Identities=14% Similarity=0.228 Sum_probs=50.1
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCCCchhHhhh
Q 022348 234 VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQVRI 292 (298)
Q Consensus 234 ~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~~~~ 292 (298)
...+-.+..+++.+++.+|++++++++|||+.||++|.+.+|...++-++....++...
T Consensus 191 ~~~gvsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~NA~~~vK~~A~ 249 (270)
T PRK10513 191 LDKRVNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMGNAIPSVKEVAQ 249 (270)
T ss_pred eCCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEecCccHHHHHhcC
Confidence 34556678899999999999999999999999999999999999888777655555443
No 104
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.35 E-value=3.8e-11 Score=98.09 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=76.9
Q ss_pred CCCCChhHHHHHHHH--HHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCC----CC----------CCCCC-
Q 022348 177 TVEPRPGVLRLMDEA--KAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGD----DV----------KQKKP- 239 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L--~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~----~~----------~~~KP- 239 (298)
.+++.||+.++++.+ ++.|+.+.|+|+++...++.+|+.. |+... |+.|++-. +- ..++.
T Consensus 69 ~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~-gl~~~--f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C 145 (234)
T PF06888_consen 69 SIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHH-GLRDC--FSEIFTNPACFDADGRLRVRPYHSHGCSLC 145 (234)
T ss_pred cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhC-CCccc--cceEEeCCceecCCceEEEeCccCCCCCcC
Confidence 468999999999999 4579999999999999999999998 99877 77776531 10 00111
Q ss_pred -----CHHHHHHHHHH---hCCCCCcEEEEecChhhHHHHHHcCCeEE
Q 022348 240 -----DPSIYVTAAKR---LGISEKDCLVVEDSVIGLQAATRAGMACV 279 (298)
Q Consensus 240 -----~~~~~~~~~~~---lgi~~~~~~~vgD~~~Di~~a~~aG~~~v 279 (298)
+..+++.+++. -|+.-++++||||+.||+-.+.+.+-.=+
T Consensus 146 ~~NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~~L~~~D~ 193 (234)
T PF06888_consen 146 PPNMCKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPALRLRPRDV 193 (234)
T ss_pred CCccchHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCcccccCCCCE
Confidence 23556666655 37778999999999999999988766533
No 105
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=99.32 E-value=1.4e-10 Score=88.28 Aligned_cols=103 Identities=18% Similarity=0.298 Sum_probs=80.9
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHH--hCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCC
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENL--IGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISE 255 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~--~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~ 255 (298)
.++||++.+.|++-++.|++++|.|.+......-.+.+- +.+..+ |+..+.- .. -.|-...-|..+++..|++|
T Consensus 102 ahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~l--fsGyfDt-ti-G~KrE~~SY~kIa~~iGl~p 177 (229)
T COG4229 102 AHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSL--FSGYFDT-TI-GKKRESQSYAKIAGDIGLPP 177 (229)
T ss_pred cccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhh--hcceeec-cc-cccccchhHHHHHHhcCCCc
Confidence 479999999999999999999999999887555554432 223333 4444332 12 25667788999999999999
Q ss_pred CcEEEEecChhhHHHHHHcCCeEEEEcCC
Q 022348 256 KDCLVVEDSVIGLQAATRAGMACVITYTS 284 (298)
Q Consensus 256 ~~~~~vgD~~~Di~~a~~aG~~~v~~~~~ 284 (298)
.+++|+.|+++.+.+|+.+|+.++.+..+
T Consensus 178 ~eilFLSDn~~EL~AA~~vGl~t~l~~R~ 206 (229)
T COG4229 178 AEILFLSDNPEELKAAAGVGLATGLAVRP 206 (229)
T ss_pred hheEEecCCHHHHHHHHhcchheeeeecC
Confidence 99999999999999999999999865443
No 106
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.30 E-value=7.1e-12 Score=106.11 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=50.1
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCCCchhHhhh
Q 022348 234 VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQVRI 292 (298)
Q Consensus 234 ~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~~~~ 292 (298)
...+..+..+.+.+++++|++++++++|||+.||++|.+.+|..+++-++....+++..
T Consensus 184 ~~~g~~K~~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag~gvam~Na~~~~k~~A~ 242 (264)
T COG0561 184 TPKGVSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAGLGVAMGNADEELKELAD 242 (264)
T ss_pred ecCCCchHHHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcCeeeeccCCCHHHHhhCC
Confidence 34566678899999999999999999999999999999999999888777555555544
No 107
>PLN02887 hydrolase family protein
Probab=99.30 E-value=7.4e-11 Score=108.77 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=50.6
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCCCchhHhhh
Q 022348 234 VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQVRI 292 (298)
Q Consensus 234 ~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~~~~ 292 (298)
+..+-.+..+++.+++.+|++++++++|||+.||++|.+.+|+.++|-++....++...
T Consensus 502 ~p~gvSKG~ALk~L~e~lGI~~eeviAFGDs~NDIeMLe~AG~gVAMgNA~eeVK~~Ad 560 (580)
T PLN02887 502 VPPGTSKGNGVKMLLNHLGVSPDEIMAIGDGENDIEMLQLASLGVALSNGAEKTKAVAD 560 (580)
T ss_pred ecCCCCHHHHHHHHHHHcCCCHHHEEEEecchhhHHHHHHCCCEEEeCCCCHHHHHhCC
Confidence 34556668899999999999999999999999999999999999888887766665444
No 108
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=99.29 E-value=6.6e-12 Score=104.25 Aligned_cols=48 Identities=25% Similarity=0.403 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCcE-EEEecCh-hhHHHHHHcCCeEEEEc
Q 022348 235 KQKKPDPSIYVTAAKRLGISEKDC-LVVEDSV-IGLQAATRAGMACVITY 282 (298)
Q Consensus 235 ~~~KP~~~~~~~~~~~lgi~~~~~-~~vgD~~-~Di~~a~~aG~~~v~~~ 282 (298)
..+||+|.+|+.+++++++.++++ +||||+. .|+.+|+++|+.++++.
T Consensus 185 ~~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v~ 234 (236)
T TIGR01460 185 VVGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLVL 234 (236)
T ss_pred eecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEEe
Confidence 367999999999999999998887 9999999 79999999999999764
No 109
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=99.28 E-value=6.8e-11 Score=97.58 Aligned_cols=60 Identities=13% Similarity=0.205 Sum_probs=50.6
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCcEEEEecChh-hHHHHHHcCCeEEEE-cCCCchhHhhhc
Q 022348 234 VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVI-GLQAATRAGMACVIT-YTSSTAEQVRII 293 (298)
Q Consensus 234 ~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~-Di~~a~~aG~~~v~~-~~~~~~~~~~~~ 293 (298)
...+||++.+++.+++++++.|++|+||||+.+ ||.-+++.|++++++ .|..+.++....
T Consensus 220 ~v~GKP~~~m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~~~G~~TLLvltGv~~led~~~~ 281 (306)
T KOG2882|consen 220 IVLGKPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDILFGKNCGFKTLLVLSGVTTLEDILEA 281 (306)
T ss_pred eecCCCCHHHHHHHHHHcCCCcceEEEEcccchhhhhHhhccCcceEEEecCcCcHHHHHhc
Confidence 347899999999999999999999999999996 999999999999954 555555554433
No 110
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.28 E-value=2.2e-11 Score=103.55 Aligned_cols=58 Identities=12% Similarity=0.176 Sum_probs=49.2
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCCCchhHhh
Q 022348 234 VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQVR 291 (298)
Q Consensus 234 ~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~~~ 291 (298)
...+-.+..+++.+++.+|++++++++|||+.||++|.+.+|...++-++....++..
T Consensus 183 ~~~g~sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~Na~~~vK~~A 240 (272)
T PRK15126 183 LPVGCNKGAALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGNAMPQLRAEL 240 (272)
T ss_pred ecCCCChHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccCChHHHHHhC
Confidence 3455566889999999999999999999999999999999999988877665555543
No 111
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.27 E-value=3.5e-10 Score=92.03 Aligned_cols=101 Identities=8% Similarity=-0.048 Sum_probs=69.2
Q ss_pred CCChhHHHHHH-HHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCC----CCC-----CCCCCHHHHHHHH
Q 022348 179 EPRPGVLRLMD-EAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGD----DVK-----QKKPDPSIYVTAA 248 (298)
Q Consensus 179 ~~~pg~~~~l~-~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~----~~~-----~~KP~~~~~~~~~ 248 (298)
.++||+.++|+ .++++|++++|+||+....++.+.+.. ++..- +.+++.. +.+ .+.-. +=...+.
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~-~~~~~---~~~i~t~le~~~gg~~~g~~c~g~-~Kv~rl~ 168 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDS-NFIHR---LNLIASQIERGNGGWVLPLRCLGH-EKVAQLE 168 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhc-ccccc---CcEEEEEeEEeCCceEcCccCCCh-HHHHHHH
Confidence 58999999996 788899999999999999888888775 33211 2222221 101 01111 1122233
Q ss_pred HHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCC
Q 022348 249 KRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 284 (298)
Q Consensus 249 ~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~ 284 (298)
+.+|.+.+.+++.|||.+|+.+...+|.+.++.+++
T Consensus 169 ~~~~~~~~~~~aYsDS~~D~pmL~~a~~~~~Vnp~~ 204 (210)
T TIGR01545 169 QKIGSPLKLYSGYSDSKQDNPLLAFCEHRWRVSKRG 204 (210)
T ss_pred HHhCCChhheEEecCCcccHHHHHhCCCcEEECcch
Confidence 345666678899999999999999999997665443
No 112
>PRK10976 putative hydrolase; Provisional
Probab=99.27 E-value=1.7e-11 Score=103.90 Aligned_cols=58 Identities=21% Similarity=0.344 Sum_probs=50.0
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCCCchhHhh
Q 022348 234 VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQVR 291 (298)
Q Consensus 234 ~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~~~ 291 (298)
...+-.+..+++.+++.+|++++++++|||+.||++|.+.+|...++-++....++..
T Consensus 185 ~~~gvsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm~NA~~~vK~~A 242 (266)
T PRK10976 185 MAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGNAHQRLKDLL 242 (266)
T ss_pred EcCCCChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeeecCCcHHHHHhC
Confidence 3445556889999999999999999999999999999999999988888876666654
No 113
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.24 E-value=2.4e-11 Score=82.06 Aligned_cols=56 Identities=32% Similarity=0.577 Sum_probs=49.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCCcEEEEecC-hhhHHHHHHcCCeEEEEcCCC-chhHhh
Q 022348 236 QKKPDPSIYVTAAKRLGISEKDCLVVEDS-VIGLQAATRAGMACVITYTSS-TAEQVR 291 (298)
Q Consensus 236 ~~KP~~~~~~~~~~~lgi~~~~~~~vgD~-~~Di~~a~~aG~~~v~~~~~~-~~~~~~ 291 (298)
.+||+|.+|..+++++++++++|+||||+ ..|+++|+++|+.+|++.++. ..+++.
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~ 59 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLE 59 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHH
T ss_pred CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHh
Confidence 57999999999999999999999999999 789999999999999766654 444444
No 114
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=99.24 E-value=3.3e-10 Score=93.30 Aligned_cols=44 Identities=16% Similarity=0.020 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEE
Q 022348 237 KKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVI 280 (298)
Q Consensus 237 ~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~ 280 (298)
+-.++.+.+.+++.+|++++++++|||+.||++|.+.+|..+++
T Consensus 177 ~~~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va~ 220 (221)
T TIGR02463 177 SSSKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVVI 220 (221)
T ss_pred CCCHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEEe
Confidence 33456689999999999999999999999999999999998653
No 115
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=99.23 E-value=2.9e-10 Score=94.92 Aligned_cols=87 Identities=20% Similarity=0.323 Sum_probs=66.3
Q ss_pred CCCCCChhHHHHHHHHHHCCCeEEEEeCCChhh---HHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhC
Q 022348 176 GTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSS---VILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLG 252 (298)
Q Consensus 176 ~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~---~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lg 252 (298)
....++||+.++|+.|+++|++++++||+.... ....++.+ |+.... ++.++..++ .++++.-.+.+.+.++
T Consensus 115 ~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~-Gi~~~~-~d~lllr~~---~~~K~~rr~~I~~~y~ 189 (266)
T TIGR01533 115 AQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRF-GFPQAD-EEHLLLKKD---KSSKESRRQKVQKDYE 189 (266)
T ss_pred CCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHc-CcCCCC-cceEEeCCC---CCCcHHHHHHHHhcCC
Confidence 355799999999999999999999999987443 33566666 776531 466665542 3566778888888777
Q ss_pred CCCCcEEEEecChhhHHHH
Q 022348 253 ISEKDCLVVEDSVIGLQAA 271 (298)
Q Consensus 253 i~~~~~~~vgD~~~Di~~a 271 (298)
| +++|||+.+|+...
T Consensus 190 I----vl~vGD~~~Df~~~ 204 (266)
T TIGR01533 190 I----VLLFGDNLLDFDDF 204 (266)
T ss_pred E----EEEECCCHHHhhhh
Confidence 7 89999999999653
No 116
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=99.22 E-value=1.2e-10 Score=93.75 Aligned_cols=89 Identities=18% Similarity=0.222 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCC-C---C--CCC---CCHHHHHHH---HH
Q 022348 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDD-V---K--QKK---PDPSIYVTA---AK 249 (298)
Q Consensus 182 pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~-~---~--~~K---P~~~~~~~~---~~ 249 (298)
|++.++|+.++++|++++|+|++....++.+++.+ ++.....+..-+..+. . + .+. -+...++.+ ..
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~-~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~ 170 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERL-GIDDDNVIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIRDE 170 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHT-TSSEGGEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc-CCCceEEEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHHhh
Confidence 45559999999999999999999999999999877 8875311111110000 0 0 000 134555555 33
Q ss_pred HhCCCCCcEEEEecChhhHHHHH
Q 022348 250 RLGISEKDCLVVEDSVIGLQAAT 272 (298)
Q Consensus 250 ~lgi~~~~~~~vgD~~~Di~~a~ 272 (298)
+ ++....+++|||+.+|+.+++
T Consensus 171 ~-~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 171 E-DIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp H-THTCCEEEEEESSGGGHHHHH
T ss_pred c-CCCCCeEEEEECCHHHHHHhC
Confidence 3 788899999999999999985
No 117
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=3.3e-10 Score=86.38 Aligned_cols=94 Identities=20% Similarity=0.265 Sum_probs=71.2
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceE--------------EeCC--CCCCCCCC
Q 022348 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCF--------------LAGD--DVKQKKPD 240 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v--------------~~~~--~~~~~KP~ 240 (298)
.+.+.||..+++++++++++++.|+|++....+...++.+.|-++....|.+ +.-+ ..|..||.
T Consensus 71 ~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~~ 150 (220)
T COG4359 71 DIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKSS 150 (220)
T ss_pred hcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCcch
Confidence 3579999999999999999999999999999999999998544432112221 1111 14555654
Q ss_pred HHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCC
Q 022348 241 PSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGM 276 (298)
Q Consensus 241 ~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~ 276 (298)
..+++.-.++.+++.||+..|+.+|+....
T Consensus 151 ------vI~~l~e~~e~~fy~GDsvsDlsaaklsDl 180 (220)
T COG4359 151 ------VIHELSEPNESIFYCGDSVSDLSAAKLSDL 180 (220)
T ss_pred ------hHHHhhcCCceEEEecCCcccccHhhhhhh
Confidence 556666677889999999999999987654
No 118
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.19 E-value=3.6e-10 Score=96.01 Aligned_cols=51 Identities=8% Similarity=-0.081 Sum_probs=44.5
Q ss_pred CCCCCCCHHHHHHHHHHhCC---CCCcEEEEecChhhHHHHHHcCCeEEEEcCC
Q 022348 234 VKQKKPDPSIYVTAAKRLGI---SEKDCLVVEDSVIGLQAATRAGMACVITYTS 284 (298)
Q Consensus 234 ~~~~KP~~~~~~~~~~~lgi---~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~ 284 (298)
...+-.+..+.+.+++.+|+ ++++++.|||+.||++|.+.+|..++|-+..
T Consensus 182 ~~~g~sKg~al~~l~~~lgi~~~~~~~viafGDs~NDi~Ml~~ag~gvAM~~~~ 235 (271)
T PRK03669 182 LDASAGKDQAANWLIATYQQLSGTRPTTLGLGDGPNDAPLLDVMDYAVVVKGLN 235 (271)
T ss_pred ecCCCCHHHHHHHHHHHHHhhcCCCceEEEEcCCHHHHHHHHhCCEEEEecCCC
Confidence 44556678899999999999 9999999999999999999999998776544
No 119
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.19 E-value=1.7e-11 Score=91.16 Aligned_cols=86 Identities=16% Similarity=0.287 Sum_probs=72.8
Q ss_pred HHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChh
Q 022348 187 LMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVI 266 (298)
Q Consensus 187 ~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~ 266 (298)
-++.|.+.|++++|+|+.+...++...+.+ |+..+ |- + .+-+-..|..+++++++.+++|.||||..+
T Consensus 43 Gik~l~~~Gi~vAIITGr~s~ive~Ra~~L-GI~~~--~q----G-----~~dK~~a~~~L~~~~~l~~e~~ayiGDD~~ 110 (170)
T COG1778 43 GIKLLLKSGIKVAIITGRDSPIVEKRAKDL-GIKHL--YQ----G-----ISDKLAAFEELLKKLNLDPEEVAYVGDDLV 110 (170)
T ss_pred HHHHHHHcCCeEEEEeCCCCHHHHHHHHHc-CCcee--ee----c-----hHhHHHHHHHHHHHhCCCHHHhhhhcCccc
Confidence 356677889999999999999999999998 88765 22 1 234578999999999999999999999999
Q ss_pred hHHHHHHcCCeEEEEcCC
Q 022348 267 GLQAATRAGMACVITYTS 284 (298)
Q Consensus 267 Di~~a~~aG~~~v~~~~~ 284 (298)
|+...+..|..+.+-...
T Consensus 111 Dlpvm~~vGls~a~~dAh 128 (170)
T COG1778 111 DLPVMEKVGLSVAVADAH 128 (170)
T ss_pred cHHHHHHcCCcccccccC
Confidence 999999999997654444
No 120
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=99.19 E-value=8.9e-11 Score=97.67 Aligned_cols=58 Identities=17% Similarity=0.363 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHH
Q 022348 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPS 242 (298)
Q Consensus 182 pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~ 242 (298)
||+.++|++|+++|++++|+|++....+...++.+ |+..+ |+.++++++....||+|+
T Consensus 149 PgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~l-GLd~Y--FdvIIs~Gdv~~~kp~~e 206 (301)
T TIGR01684 149 PRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKV-KLDRY--FDIIISGGHKAEEYSTMS 206 (301)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHc-CCCcc--cCEEEECCccccCCCCcc
Confidence 89999999999999999999999999999999998 99988 999999999888888775
No 121
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=99.19 E-value=1.1e-10 Score=90.47 Aligned_cols=95 Identities=21% Similarity=0.329 Sum_probs=66.2
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCCh--------------hhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHH
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATK--------------SSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYV 245 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~--------------~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~ 245 (298)
+.|++.+.|++|.+.|+.++|+||... ..+..+++.+ ++. +..+++...-...||.+-+++
T Consensus 30 ~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l-~ip----~~~~~a~~~d~~RKP~~GM~~ 104 (159)
T PF08645_consen 30 FPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKEL-GIP----IQVYAAPHKDPCRKPNPGMWE 104 (159)
T ss_dssp C-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHC-TS-----EEEEECGCSSTTSTTSSHHHH
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHc-CCc----eEEEecCCCCCCCCCchhHHH
Confidence 446899999999999999999999631 1222334443 443 334444344468999999999
Q ss_pred HHHHHhC----CCCCcEEEEecC-----------hhhHHHHHHcCCeEE
Q 022348 246 TAAKRLG----ISEKDCLVVEDS-----------VIGLQAATRAGMACV 279 (298)
Q Consensus 246 ~~~~~lg----i~~~~~~~vgD~-----------~~Di~~a~~aG~~~v 279 (298)
.++++++ ++.++++||||. -.|.+-|.++|++..
T Consensus 105 ~~~~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f~ 153 (159)
T PF08645_consen 105 FALKDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKFY 153 (159)
T ss_dssp HHCCCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--EE
T ss_pred HHHHhccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCccc
Confidence 9999987 488999999996 579999999999853
No 122
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=99.18 E-value=3.3e-10 Score=87.53 Aligned_cols=93 Identities=17% Similarity=0.215 Sum_probs=64.9
Q ss_pred CChhHHHHHHHHHHCCC--eEEEEeCCC-------hhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHH
Q 022348 180 PRPGVLRLMDEAKAAGK--KVAVCSAAT-------KSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKR 250 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~--~i~i~S~~~-------~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~ 250 (298)
+.|.+.+.++++++.+. ++.|+||+. ...++..-+.+ |+.-+ .. ...|| ..+..+++.
T Consensus 60 i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~l-gIpvl------~h----~~kKP--~~~~~i~~~ 126 (168)
T PF09419_consen 60 IPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKAL-GIPVL------RH----RAKKP--GCFREILKY 126 (168)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhh-CCcEE------Ee----CCCCC--ccHHHHHHH
Confidence 44455566666666655 599999983 44455444444 65422 11 14576 567777777
Q ss_pred hCC-----CCCcEEEEecCh-hhHHHHHHcCCeEEEEcCCC
Q 022348 251 LGI-----SEKDCLVVEDSV-IGLQAATRAGMACVITYTSS 285 (298)
Q Consensus 251 lgi-----~~~~~~~vgD~~-~Di~~a~~aG~~~v~~~~~~ 285 (298)
++. .|+++++|||.. .|+.+|...|+.+||+..+.
T Consensus 127 ~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~gv 167 (168)
T PF09419_consen 127 FKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDGV 167 (168)
T ss_pred HhhccCCCCchhEEEEcchHHHHHHHhhccCceEEEEecCc
Confidence 654 499999999999 69999999999999887764
No 123
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=99.18 E-value=5.6e-10 Score=93.63 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=42.5
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEE
Q 022348 232 DDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVIT 281 (298)
Q Consensus 232 ~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~ 281 (298)
+..+.+.++..+++.+++++|+++++|++|||+.||++|++.+|..++.+
T Consensus 160 di~~~~~~K~~al~~l~~~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~ 209 (249)
T TIGR01485 160 DILPQGSGKGQALQYLLQKLAMEPSQTLVCGDSGNDIELFEIGSVRGVIV 209 (249)
T ss_pred EEEeCCCChHHHHHHHHHHcCCCccCEEEEECChhHHHHHHccCCcEEEE
Confidence 34567788899999999999999999999999999999999965444443
No 124
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=99.16 E-value=2.7e-10 Score=94.79 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=48.9
Q ss_pred CCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCCCchhHh
Q 022348 233 DVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQV 290 (298)
Q Consensus 233 ~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~~ 290 (298)
..+.+++++.+++.+++++|++++++++|||+.||+.|++.+|...++-+.....++.
T Consensus 153 i~~~~~~K~~al~~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~~iav~na~~~~k~~ 210 (236)
T TIGR02471 153 VLPLRASKGLALRYLSYRWGLPLEQILVAGDSGNDEEMLRGLTLGVVVGNHDPELEGL 210 (236)
T ss_pred EeeCCCChHHHHHHHHHHhCCCHHHEEEEcCCccHHHHHcCCCcEEEEcCCcHHHHHh
Confidence 3557788899999999999999999999999999999999999998766554444443
No 125
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=99.14 E-value=1.3e-09 Score=94.62 Aligned_cols=50 Identities=22% Similarity=0.195 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHh--------CC-----CCCcEEEEecCh-hhHHHHHHcCCeEEEEcCC
Q 022348 235 KQKKPDPSIYVTAAKRL--------GI-----SEKDCLVVEDSV-IGLQAATRAGMACVITYTS 284 (298)
Q Consensus 235 ~~~KP~~~~~~~~~~~l--------gi-----~~~~~~~vgD~~-~Di~~a~~aG~~~v~~~~~ 284 (298)
..+||++.+|+.+++.+ ++ ++++++||||++ .|+.+|+++||.++++.++
T Consensus 230 ~~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~tG 293 (321)
T TIGR01456 230 TLGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKTG 293 (321)
T ss_pred EcCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEeccc
Confidence 35899999999998887 43 347999999999 7999999999999976654
No 126
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=99.12 E-value=1.9e-09 Score=90.90 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=43.9
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcC
Q 022348 234 VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYT 283 (298)
Q Consensus 234 ~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~ 283 (298)
...+-.+..+++.+++.+|++++++++|||+.||++|++.+|+.+++.++
T Consensus 183 ~~~~~~K~~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~~na 232 (256)
T TIGR00099 183 TAKGVSKGSALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAMGNA 232 (256)
T ss_pred cCCCCChHHHHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEecCc
Confidence 34555678899999999999999999999999999999999999877544
No 127
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.00 E-value=3e-10 Score=88.52 Aligned_cols=107 Identities=11% Similarity=0.134 Sum_probs=89.9
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCcc-ccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCC
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMER-FEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEK 256 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~-~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~ 256 (298)
+..+||+.++|++|.+. +.++|.|++....++.+++.+ +... + |+.++..+.....+++ |.+.++.+|.+++
T Consensus 41 v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~l-dp~~~~--f~~~l~r~~~~~~~~~---~~K~L~~l~~~~~ 113 (162)
T TIGR02251 41 VFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDIL-DRGGKV--ISRRLYRESCVFTNGK---YVKDLSLVGKDLS 113 (162)
T ss_pred EEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHH-CcCCCE--EeEEEEccccEEeCCC---EEeEchhcCCChh
Confidence 46899999999999998 999999999999999999998 6654 5 7888888776655655 6677888999999
Q ss_pred cEEEEecChhhHHHHHHcCCeEEEEcCCCchhHhh
Q 022348 257 DCLVVEDSVIGLQAATRAGMACVITYTSSTAEQVR 291 (298)
Q Consensus 257 ~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~~~ 291 (298)
++++|||++.++.++..+|+.+....+.....+|.
T Consensus 114 ~vIiVDD~~~~~~~~~~NgI~i~~f~~~~~D~~L~ 148 (162)
T TIGR02251 114 KVIIIDNSPYSYSLQPDNAIPIKSWFGDPNDTELL 148 (162)
T ss_pred hEEEEeCChhhhccCccCEeecCCCCCCCCHHHHH
Confidence 99999999999999999999987555555555543
No 128
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.00 E-value=1.2e-08 Score=80.38 Aligned_cols=103 Identities=16% Similarity=0.210 Sum_probs=73.3
Q ss_pred CCCCChhHHHHHHHHHHCCC-eEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCC----CCC-----------CCC--
Q 022348 177 TVEPRPGVLRLMDEAKAAGK-KVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGD----DVK-----------QKK-- 238 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~g~-~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~----~~~-----------~~K-- 238 (298)
.+++.||+.++++.+++.|. .+.|+|..+.-.++.+|+.+ ++..+ |+.|++-- +-| .++
T Consensus 82 ~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~-~~~d~--F~~IfTNPa~~da~G~L~v~pyH~~hsC~~C 158 (256)
T KOG3120|consen 82 SIPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAA-GIHDL--FSEIFTNPACVDASGRLLVRPYHTQHSCNLC 158 (256)
T ss_pred cCCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHc-cHHHH--HHHHhcCCcccCCCCcEEeecCCCCCccCcC
Confidence 45899999999999999996 99999999999999999999 99988 77776531 100 011
Q ss_pred C----CHHHHHHHHHH---hCCCCCcEEEEecChhhHHHHHHc-CCeEEEEc
Q 022348 239 P----DPSIYVTAAKR---LGISEKDCLVVEDSVIGLQAATRA-GMACVITY 282 (298)
Q Consensus 239 P----~~~~~~~~~~~---lgi~~~~~~~vgD~~~Di~~a~~a-G~~~v~~~ 282 (298)
| +..++..+... -|+.-++.+||||+.||+-..... +..+++--
T Consensus 159 PsNmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~ampR 210 (256)
T KOG3120|consen 159 PSNMCKGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAMPR 210 (256)
T ss_pred chhhhhhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCceeccc
Confidence 1 11233333322 378888999999999998765543 44444433
No 129
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.99 E-value=4.7e-09 Score=88.43 Aligned_cols=59 Identities=8% Similarity=-0.045 Sum_probs=48.7
Q ss_pred CCCCCCHHHHHHHHHHhCCC--CCcEEEEecChhhHHHHHHcCCeEEEEcCCCchhHhhhc
Q 022348 235 KQKKPDPSIYVTAAKRLGIS--EKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQVRII 293 (298)
Q Consensus 235 ~~~KP~~~~~~~~~~~lgi~--~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~~~~~ 293 (298)
+..-.+....+.+++.+|++ .+++++|||+.||++|.+.+|..+++-+.....+++++.
T Consensus 172 ~~~~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~~ag~~vam~Na~~~~~~lk~~ 232 (256)
T TIGR01486 172 GAGSDKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDLAVVVPGPNGPNVSLKPG 232 (256)
T ss_pred cCCCCHHHHHHHHHHHHhhcCCCceEEEEcCCHhhHHHHHHCCEEEEeCCCCCCccccCcc
Confidence 34556678899999999999 999999999999999999999998887776433444543
No 130
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=98.99 E-value=5.9e-10 Score=93.33 Aligned_cols=53 Identities=19% Similarity=0.193 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCCCchh
Q 022348 236 QKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAE 288 (298)
Q Consensus 236 ~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~ 288 (298)
..-.+..+.+.+++.+|++++++++|||+.||++|.+.+|..+++-++....+
T Consensus 183 ~~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am~na~~~~k 235 (254)
T PF08282_consen 183 KGVSKGSAIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAMGNATPELK 235 (254)
T ss_dssp TTSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHH
T ss_pred CCCCHHHHHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEEcCCCHHHH
Confidence 44455789999999999999999999999999999999999987766554433
No 131
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.97 E-value=4.3e-09 Score=87.85 Aligned_cols=81 Identities=22% Similarity=0.367 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCC-----------------------
Q 022348 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKK----------------------- 238 (298)
Q Consensus 182 pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~K----------------------- 238 (298)
|++.++|++|+++|++++|+||+....+...++.+ ++..+ |+.+++++......
T Consensus 151 p~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~l-gL~~y--FDvII~~g~i~~k~~~~~~~d~~~~~~~~~~~f~~d~ 227 (303)
T PHA03398 151 PFVYDSLDELKERGCVLVLWSYGNREHVVHSLKET-KLEGY--FDIIICGGRKAGEYSRRVIVDNKYKMVFVKKPFYLDV 227 (303)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHc-CCCcc--ccEEEECCCcccccccceeecccceeEEecCceeEeC
Confidence 79999999999999999999999999999999998 99988 89888876532111
Q ss_pred ------C-CHHHHHHHHHHhCCCC-CcEEEEecCh
Q 022348 239 ------P-DPSIYVTAAKRLGISE-KDCLVVEDSV 265 (298)
Q Consensus 239 ------P-~~~~~~~~~~~lgi~~-~~~~~vgD~~ 265 (298)
| +|.+....+++.|+.- +.+--|+|-.
T Consensus 228 ~~~~~lPKSprvVl~yL~~~gvn~~KtiTLVDDl~ 262 (303)
T PHA03398 228 TDVKNLPKSPRVVLWYLRKKGVNYFKTITLVDDLK 262 (303)
T ss_pred CcccCCCCCCeehHHHHHHcCcceeccEEEeccCc
Confidence 1 4667777888888874 6667777776
No 132
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=98.90 E-value=7.1e-09 Score=96.79 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=72.9
Q ss_pred CCCChhHHHHHHHHHHCC-CeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCC
Q 022348 178 VEPRPGVLRLMDEAKAAG-KKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEK 256 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g-~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~ 256 (298)
-.++||+.++|++|+++| ++++++||.....+...++++ |+..+ |..+ .+++++ .++++++..++
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~l-gi~~~--f~~~-------~p~~K~----~~v~~l~~~~~ 448 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAEL-GIDEV--HAEL-------LPEDKL----AIVKELQEEGG 448 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHh-CCCee--eccC-------CHHHHH----HHHHHHHHcCC
Confidence 369999999999999999 999999999999999999998 99776 5432 112223 35555555677
Q ss_pred cEEEEecChhhHHHHHHcCCeEEEE
Q 022348 257 DCLVVEDSVIGLQAATRAGMACVIT 281 (298)
Q Consensus 257 ~~~~vgD~~~Di~~a~~aG~~~v~~ 281 (298)
+|+||||+.||+.+++++|+.+.+.
T Consensus 449 ~v~~vGDg~nD~~al~~A~vgia~g 473 (556)
T TIGR01525 449 VVAMVGDGINDAPALAAADVGIAMG 473 (556)
T ss_pred EEEEEECChhHHHHHhhCCEeEEeC
Confidence 9999999999999999999776554
No 133
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.90 E-value=7.1e-09 Score=86.57 Aligned_cols=91 Identities=14% Similarity=0.235 Sum_probs=75.1
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCChhhHH--HHHHHHhCCcc-ccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCC
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVI--LCLENLIGMER-FEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGIS 254 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~--~~l~~~~~l~~-~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~ 254 (298)
..++||+.++|++|+++|++++++||+...... ..++.+ |+.. . |+.|+++++... ..+..+++++|+.
T Consensus 23 ~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~-gl~~~~--~~~Ii~s~~~~~-----~~l~~~~~~~~~~ 94 (242)
T TIGR01459 23 NHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSL-GINADL--PEMIISSGEIAV-----QMILESKKRFDIR 94 (242)
T ss_pred CccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHC-CCCccc--cceEEccHHHHH-----HHHHhhhhhccCC
Confidence 368999999999999999999999998877555 678887 8876 6 899998865432 4677777888999
Q ss_pred CCcEEEEecChhhHHHHHHcCC
Q 022348 255 EKDCLVVEDSVIGLQAATRAGM 276 (298)
Q Consensus 255 ~~~~~~vgD~~~Di~~a~~aG~ 276 (298)
++++++|||+..|++.....|.
T Consensus 95 ~~~~~~vGd~~~d~~~~~~~~~ 116 (242)
T TIGR01459 95 NGIIYLLGHLENDIINLMQCYT 116 (242)
T ss_pred CceEEEeCCcccchhhhcCCCc
Confidence 9999999999999887766654
No 134
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.87 E-value=5.8e-08 Score=79.98 Aligned_cols=43 Identities=7% Similarity=0.016 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHhCC--CCCcEEEEecChhhHHHHHHcCCeEEE
Q 022348 238 KPDPSIYVTAAKRLGI--SEKDCLVVEDSVIGLQAATRAGMACVI 280 (298)
Q Consensus 238 KP~~~~~~~~~~~lgi--~~~~~~~vgD~~~Di~~a~~aG~~~v~ 280 (298)
-.+....+.+++.+++ .++++++|||+.||+.|.+.+|+.+++
T Consensus 180 ~sK~~al~~l~~~~~~~~~~~~~i~~GD~~nD~~ml~~ag~~v~v 224 (225)
T TIGR02461 180 SDKGKAIKRLLDLYKLRPGAIESVGLGDSENDFPMFEVVDLAFLV 224 (225)
T ss_pred CCHHHHHHHHHHHhccccCcccEEEEcCCHHHHHHHHhCCCcEec
Confidence 3346688888888866 677999999999999999999998653
No 135
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=98.82 E-value=2.6e-08 Score=77.77 Aligned_cols=48 Identities=23% Similarity=0.470 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHHhCCCCCcEEEEecChh-hHHHHHHcCCeEEEEcC
Q 022348 236 QKKPDPSIYVTAAKRLGISEKDCLVVEDSVI-GLQAATRAGMACVITYT 283 (298)
Q Consensus 236 ~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~-Di~~a~~aG~~~v~~~~ 283 (298)
.+||+|.+|+.+++-+|++|++++||||..+ |+-+|++.||..|.+-.
T Consensus 179 vGKP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilVkT 227 (262)
T KOG3040|consen 179 VGKPSPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILVKT 227 (262)
T ss_pred ecCCCHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEeec
Confidence 5789999999999999999999999999996 99999999999996644
No 136
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=98.82 E-value=6.8e-08 Score=89.52 Aligned_cols=44 Identities=5% Similarity=-0.049 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHhCCCCCcEEEE--ecChhhHHHHHHcCCeEEE
Q 022348 237 KKPDPSIYVTAAKRLGISEKDCLVV--EDSVIGLQAATRAGMACVI 280 (298)
Q Consensus 237 ~KP~~~~~~~~~~~lgi~~~~~~~v--gD~~~Di~~a~~aG~~~v~ 280 (298)
.-.+..+.+.+++.+|++.++++.| ||+.||+.|.+.+|...++
T Consensus 611 gvdKG~AL~~L~e~~gI~~~eViafalGDs~NDisMLe~Ag~gVAM 656 (694)
T PRK14502 611 GNDKGKAIKILNELFRLNFGNIHTFGLGDSENDYSMLETVDSPILV 656 (694)
T ss_pred CCCHHHHHHHHHHHhCCCccceEEEEcCCcHhhHHHHHhCCceEEE
Confidence 4456789999999999999999999 9999999999999999765
No 137
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=98.81 E-value=1.5e-08 Score=94.06 Aligned_cols=89 Identities=21% Similarity=0.275 Sum_probs=72.8
Q ss_pred CCChhHHHHHHHHHHCCC-eEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCc
Q 022348 179 EPRPGVLRLMDEAKAAGK-KVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKD 257 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~-~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~ 257 (298)
.++||+.+++++|+++|+ +++++||.....++..++++ |++.+ |..+. +.++ ..++++++...++
T Consensus 362 ~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~l-gi~~~--f~~~~-------p~~K----~~~i~~l~~~~~~ 427 (536)
T TIGR01512 362 EPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVAREL-GIDEV--HAELL-------PEDK----LEIVKELREKYGP 427 (536)
T ss_pred cchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHc-CChhh--hhccC-------cHHH----HHHHHHHHhcCCE
Confidence 589999999999999999 99999999999999999998 99876 54321 2222 3355666666689
Q ss_pred EEEEecChhhHHHHHHcCCeEEEE
Q 022348 258 CLVVEDSVIGLQAATRAGMACVIT 281 (298)
Q Consensus 258 ~~~vgD~~~Di~~a~~aG~~~v~~ 281 (298)
++||||+.||+.+++.+|+...+.
T Consensus 428 v~~vGDg~nD~~al~~A~vgia~g 451 (536)
T TIGR01512 428 VAMVGDGINDAPALAAADVGIAMG 451 (536)
T ss_pred EEEEeCCHHHHHHHHhCCEEEEeC
Confidence 999999999999999999865443
No 138
>PLN02382 probable sucrose-phosphatase
Probab=98.76 E-value=2.8e-07 Score=82.52 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHh---CCCCCcEEEEecChhhHHHHHHcC-CeEEEEcCCCchhH
Q 022348 235 KQKKPDPSIYVTAAKRL---GISEKDCLVVEDSVIGLQAATRAG-MACVITYTSSTAEQ 289 (298)
Q Consensus 235 ~~~KP~~~~~~~~~~~l---gi~~~~~~~vgD~~~Di~~a~~aG-~~~v~~~~~~~~~~ 289 (298)
+.+--|..+++.+++++ |+++++++++||+.||++|.+.+| ...++-+.....++
T Consensus 171 p~g~sKg~Al~~L~~~~~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam~NA~~elk~ 229 (413)
T PLN02382 171 PQGAGKGQALAYLLKKLKAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMVSNAQEELLQ 229 (413)
T ss_pred eCCCCHHHHHHHHHHHhhhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEEcCCcHHHHH
Confidence 34445678999999999 999999999999999999999999 67667665544444
No 139
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.75 E-value=3.5e-07 Score=76.62 Aligned_cols=48 Identities=10% Similarity=-0.094 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHhCCC--CCcEEEEecChhhHHHHHHcCCeEEEEcCCCc
Q 022348 238 KPDPSIYVTAAKRLGIS--EKDCLVVEDSVIGLQAATRAGMACVITYTSST 286 (298)
Q Consensus 238 KP~~~~~~~~~~~lgi~--~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~ 286 (298)
-++....+.+.+.+.-. +-.++.+||++||+.|.+.+.+..| +.++..
T Consensus 207 ~dKg~A~~~L~~~y~~~~~~~~tiaLGDspND~~mLe~~D~~vv-i~~~~~ 256 (302)
T PRK12702 207 LPGEQAVQLLLDCYQRHLGPIKALGIGCSPPDLAFLRWSEQKVV-LPSPIA 256 (302)
T ss_pred CCHHHHHHHHHHHHHhccCCceEEEecCChhhHHHHHhCCeeEE-ecCCCC
Confidence 35577788777776543 4478999999999999999999965 455444
No 140
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.75 E-value=4.2e-08 Score=91.52 Aligned_cols=89 Identities=15% Similarity=0.190 Sum_probs=70.1
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcE
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDC 258 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~ 258 (298)
.++||+.+++++|+++|++++++|+.....++..++++ |++ + |. +. .++++++ +++++...+++|
T Consensus 405 ~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~l-gi~-~--~~-----~~--~p~~K~~----~v~~l~~~~~~v 469 (562)
T TIGR01511 405 QLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKEL-GIN-V--RA-----EV--LPDDKAA----LIKELQEKGRVV 469 (562)
T ss_pred cccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHc-CCc-E--Ec-----cC--ChHHHHH----HHHHHHHcCCEE
Confidence 58999999999999999999999999999999999998 885 2 22 11 1233334 444444467899
Q ss_pred EEEecChhhHHHHHHcCCeEEEEc
Q 022348 259 LVVEDSVIGLQAATRAGMACVITY 282 (298)
Q Consensus 259 ~~vgD~~~Di~~a~~aG~~~v~~~ 282 (298)
+||||+.||+.+++++|+...+.+
T Consensus 470 ~~VGDg~nD~~al~~A~vgia~g~ 493 (562)
T TIGR01511 470 AMVGDGINDAPALAQADVGIAIGA 493 (562)
T ss_pred EEEeCCCccHHHHhhCCEEEEeCC
Confidence 999999999999999998754543
No 141
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=98.72 E-value=6.2e-08 Score=78.70 Aligned_cols=46 Identities=20% Similarity=0.096 Sum_probs=42.3
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEE
Q 022348 234 VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACV 279 (298)
Q Consensus 234 ~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v 279 (298)
.+.+.+++.+++.+++++|++++++++|||+.||+.+++.+|+..+
T Consensus 158 ~p~~~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~~~~~va 203 (204)
T TIGR01484 158 LPAGVDKGSALQALLKELNGKRDEILAFGDSGNDEEMFEVAGLAVA 203 (204)
T ss_pred ecCCCChHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHcCCceE
Confidence 4567888999999999999999999999999999999999999865
No 142
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.71 E-value=7.2e-08 Score=94.23 Aligned_cols=92 Identities=15% Similarity=0.197 Sum_probs=75.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcE
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDC 258 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~ 258 (298)
.++||+.+.+++|++.|++++++|+......+.+++++ |+..+ |..+ . |+....++++++..++++
T Consensus 650 ~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~l-gi~~~--~~~~---------~--p~~K~~~i~~l~~~~~~v 715 (834)
T PRK10671 650 PLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEA-GIDEV--IAGV---------L--PDGKAEAIKRLQSQGRQV 715 (834)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-CCCEE--EeCC---------C--HHHHHHHHHHHhhcCCEE
Confidence 57899999999999999999999999999899999988 88754 3321 1 334456777888888899
Q ss_pred EEEecChhhHHHHHHcCCeEEEEcCC
Q 022348 259 LVVEDSVIGLQAATRAGMACVITYTS 284 (298)
Q Consensus 259 ~~vgD~~~Di~~a~~aG~~~v~~~~~ 284 (298)
+||||+.||+.+++.+|+...+.++.
T Consensus 716 ~~vGDg~nD~~al~~Agvgia~g~g~ 741 (834)
T PRK10671 716 AMVGDGINDAPALAQADVGIAMGGGS 741 (834)
T ss_pred EEEeCCHHHHHHHHhCCeeEEecCCC
Confidence 99999999999999999976565443
No 143
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=98.69 E-value=1.5e-07 Score=75.66 Aligned_cols=92 Identities=17% Similarity=0.350 Sum_probs=57.5
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEeCCChh-------hHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHH
Q 022348 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKS-------SVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAK 249 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~-------~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~ 249 (298)
.+++.||+.+.|++|.+.|..+.++|..... .....++++++...+ -+.+++++ |.
T Consensus 71 ~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~--~~~~~~~~-----K~---------- 133 (191)
T PF06941_consen 71 NLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPY--DNLIFTGD-----KT---------- 133 (191)
T ss_dssp T--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHH--CCEEEESS-----GG----------
T ss_pred CCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCch--heEEEecC-----CC----------
Confidence 4579999999999999999778777776543 233455555343332 23444322 21
Q ss_pred HhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCCCchhH
Q 022348 250 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQ 289 (298)
Q Consensus 250 ~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~ 289 (298)
.++. + ++|+|++.++..+...|+++++...+.+...
T Consensus 134 ~v~~---D-vlIDD~~~n~~~~~~~g~~~iLfd~p~Nr~~ 169 (191)
T PF06941_consen 134 LVGG---D-VLIDDRPHNLEQFANAGIPVILFDQPYNRDE 169 (191)
T ss_dssp GC-----S-EEEESSSHHHSS-SSESSEEEEE--GGGTT-
T ss_pred eEec---c-EEecCChHHHHhccCCCceEEEEcCCCCCCC
Confidence 1222 2 8999999999999999999998888777654
No 144
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=98.68 E-value=7.5e-07 Score=72.56 Aligned_cols=102 Identities=15% Similarity=0.079 Sum_probs=65.0
Q ss_pred cCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhh---HHHHHHHHhCCccccCcceEEeCCCCCCCCCCH----HHHHHH
Q 022348 175 SGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSS---VILCLENLIGMERFEGLDCFLAGDDVKQKKPDP----SIYVTA 247 (298)
Q Consensus 175 ~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~---~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~----~~~~~~ 247 (298)
....+..|++.++++.|+++|++++++|+..... ....|... |... ++.++-.......|+.. +....+
T Consensus 116 ~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~-G~~~---~~~LiLR~~~d~~~~~~~yKs~~R~~l 191 (229)
T TIGR01675 116 KGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINA-GFTG---WKHLILRGLEDSNKTVVTYKSEVRKSL 191 (229)
T ss_pred cCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHc-CCCC---cCeeeecCCCCCCchHhHHHHHHHHHH
Confidence 3456899999999999999999999999998765 34445554 5543 35444432112233221 222222
Q ss_pred HHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCC
Q 022348 248 AKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 284 (298)
Q Consensus 248 ~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~ 284 (298)
. +-|.. =+..|||..+|+.+ ..+|.++..++++
T Consensus 192 ~-~~GYr--Iv~~iGDq~sDl~G-~~~~~RtFKLPNP 224 (229)
T TIGR01675 192 M-EEGYR--IWGNIGDQWSDLLG-SPPGRRTFKLPNP 224 (229)
T ss_pred H-hCCce--EEEEECCChHHhcC-CCccCceeeCCCC
Confidence 2 22332 26889999999966 4577777766654
No 145
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.66 E-value=3e-07 Score=65.64 Aligned_cols=84 Identities=21% Similarity=0.232 Sum_probs=53.3
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhh---HHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCC
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSS---VILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISE 255 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~---~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~ 255 (298)
.++||+.++++.|+++|.+++++||+.... ....|+.+ |+.-- .+.++++. ......+++. ...
T Consensus 14 ~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~-Gi~~~--~~~i~ts~---------~~~~~~l~~~-~~~ 80 (101)
T PF13344_consen 14 EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKL-GIPVD--EDEIITSG---------MAAAEYLKEH-KGG 80 (101)
T ss_dssp EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHT-TTT----GGGEEEHH---------HHHHHHHHHH-TTS
T ss_pred CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhc-CcCCC--cCEEEChH---------HHHHHHHHhc-CCC
Confidence 488999999999999999999999997544 33445555 66532 46666542 3444444442 234
Q ss_pred CcEEEEecChhhHHHHHHcCC
Q 022348 256 KDCLVVEDSVIGLQAATRAGM 276 (298)
Q Consensus 256 ~~~~~vgD~~~Di~~a~~aG~ 276 (298)
..++++|-. ...+.++.+|+
T Consensus 81 ~~v~vlG~~-~l~~~l~~~G~ 100 (101)
T PF13344_consen 81 KKVYVLGSD-GLREELREAGF 100 (101)
T ss_dssp SEEEEES-H-HHHHHHHHTTE
T ss_pred CEEEEEcCH-HHHHHHHHcCC
Confidence 678888855 55666666664
No 146
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=98.61 E-value=1e-06 Score=73.04 Aligned_cols=107 Identities=16% Similarity=0.171 Sum_probs=63.4
Q ss_pred cCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHH----HHH
Q 022348 175 SGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTA----AKR 250 (298)
Q Consensus 175 ~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~----~~~ 250 (298)
....+..|++.++.+.++++|++|+++||.....-....+.| .-..|.+.+.++-.......+.+.--|+.. +.+
T Consensus 141 ~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL-~kaGy~~~~~LiLR~~~D~~~~~av~yKs~~R~~li~ 219 (275)
T TIGR01680 141 KGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANL-KKAGYHTWEKLILKDPQDNSAENAVEYKTAARAKLIQ 219 (275)
T ss_pred cccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHH-HHcCCCCcceeeecCCCCCccchhHHHHHHHHHHHHH
Confidence 345679999999999999999999999999865444444444 222222234444332211111111122211 122
Q ss_pred hCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCC
Q 022348 251 LGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 284 (298)
Q Consensus 251 lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~ 284 (298)
-|... +..|||..+|+.+....+.++..++++
T Consensus 220 eGYrI--v~~iGDq~sDl~G~~~g~~RtFKLPNP 251 (275)
T TIGR01680 220 EGYNI--VGIIGDQWNDLKGEHRGAIRSFKLPNP 251 (275)
T ss_pred cCceE--EEEECCCHHhccCCCccCcceecCCCc
Confidence 34332 688999999997665333577777766
No 147
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=98.59 E-value=1.9e-07 Score=91.75 Aligned_cols=99 Identities=17% Similarity=0.265 Sum_probs=82.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCC----------------CCCCCHH
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVK----------------QKKPDPS 242 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~----------------~~KP~~~ 242 (298)
+++||+.+.++.|++.|+++.++|+.....+..+.+++ |+... ++.++++++.. .+.+.|+
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~-Gi~~~--~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~ 604 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRL-GMPSK--TSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPE 604 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCCCC--CCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHH
Confidence 57999999999999999999999999999999999998 98765 55566654432 2346677
Q ss_pred HHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEE
Q 022348 243 IYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVI 280 (298)
Q Consensus 243 ~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~ 280 (298)
-...+.+.+.-..+.+.|+||+.||+.+++.|+++..+
T Consensus 605 ~K~~iv~~lq~~g~~v~mvGDGvND~pAl~~AdVGia~ 642 (884)
T TIGR01522 605 HKMKIVKALQKRGDVVAMTGDGVNDAPALKLADIGVAM 642 (884)
T ss_pred HHHHHHHHHHHCCCEEEEECCCcccHHHHHhCCeeEec
Confidence 77777777766678899999999999999999988655
No 148
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=98.59 E-value=7.8e-08 Score=80.34 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCC
Q 022348 235 KQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 284 (298)
Q Consensus 235 ~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~ 284 (298)
+..--|....+.+++++++++++++++||+.||+.|. ..+...|++.+.
T Consensus 161 P~~a~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL-~~~~~~vvV~Na 209 (247)
T PF05116_consen 161 PKGASKGAALRYLMERWGIPPEQVLVAGDSGNDLEML-EGGDHGVVVGNA 209 (247)
T ss_dssp ETT-SHHHHHHHHHHHHT--GGGEEEEESSGGGHHHH-CCSSEEEE-TTS
T ss_pred cCCCCHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHH-cCcCCEEEEcCC
Confidence 3444567899999999999999999999999999999 666666655554
No 149
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.58 E-value=3.5e-07 Score=66.02 Aligned_cols=84 Identities=17% Similarity=0.288 Sum_probs=67.3
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCH---HHHHHHHHHh--
Q 022348 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDP---SIYVTAAKRL-- 251 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~---~~~~~~~~~l-- 251 (298)
.+.++|.+.+++.++|..|+-+..+|=++...+.+.|+.+ ++.++ |+-++. +|.| .++.++++++
T Consensus 39 ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral-~~~~y--Fhy~Vi-------ePhP~K~~ML~~llr~i~~ 108 (164)
T COG4996 39 EVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRAL-DLLQY--FHYIVI-------EPHPYKFLMLSQLLREINT 108 (164)
T ss_pred EEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHh-chhhh--EEEEEe-------cCCChhHHHHHHHHHHHHH
Confidence 3579999999999999999999999999988899999998 99999 887664 3444 3555555553
Q ss_pred ----CCCCCcEEEEecChhhHHH
Q 022348 252 ----GISEKDCLVVEDSVIGLQA 270 (298)
Q Consensus 252 ----gi~~~~~~~vgD~~~Di~~ 270 (298)
.+.|.++++++|..--+.-
T Consensus 109 er~~~ikP~~Ivy~DDR~iH~~~ 131 (164)
T COG4996 109 ERNQKIKPSEIVYLDDRRIHFGN 131 (164)
T ss_pred hhccccCcceEEEEecccccHHH
Confidence 5679999999999854433
No 150
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=98.57 E-value=7.1e-08 Score=79.41 Aligned_cols=103 Identities=20% Similarity=0.205 Sum_probs=62.7
Q ss_pred CCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHH---HHHHHhCCccccCcceEEeCCCCCCCC---C-CHHHHHHHH
Q 022348 176 GTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVIL---CLENLIGMERFEGLDCFLAGDDVKQKK---P-DPSIYVTAA 248 (298)
Q Consensus 176 ~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~---~l~~~~~l~~~~~fd~v~~~~~~~~~K---P-~~~~~~~~~ 248 (298)
......||+.+|+..++++|++|+++||........ -|... |...+ -..++.++.....+ . +..-...+.
T Consensus 112 ~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~-G~~~~--~~l~lr~~~~~~~~~~~~yK~~~r~~i~ 188 (229)
T PF03767_consen 112 GKAPAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKA-GFPGW--DHLILRPDKDPSKKSAVEYKSERRKEIE 188 (229)
T ss_dssp TGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHH-TTSTB--SCGEEEEESSTSS------SHHHHHHHH
T ss_pred ccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHc-CCCcc--chhccccccccccccccccchHHHHHHH
Confidence 334799999999999999999999999987664443 45555 65443 22333333221111 1 223333333
Q ss_pred HHhCCCCCcEEEEecChhhHHHHHHc---CCeEEEEcCC
Q 022348 249 KRLGISEKDCLVVEDSVIGLQAATRA---GMACVITYTS 284 (298)
Q Consensus 249 ~~lgi~~~~~~~vgD~~~Di~~a~~a---G~~~v~~~~~ 284 (298)
++ |... +++|||..+|+..++.. |-..+.++++
T Consensus 189 ~~-Gy~I--i~~iGD~~~D~~~~~~~~~~~~r~f~lPNp 224 (229)
T PF03767_consen 189 KK-GYRI--IANIGDQLSDFSGAKTAGARAERWFKLPNP 224 (229)
T ss_dssp HT-TEEE--EEEEESSGGGCHCTHHHHHHHTTEEE-TTS
T ss_pred Hc-CCcE--EEEeCCCHHHhhcccccccccceEEEcCCC
Confidence 33 4433 89999999999994433 4555666554
No 151
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=98.49 E-value=2.2e-06 Score=62.08 Aligned_cols=92 Identities=16% Similarity=0.215 Sum_probs=76.0
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCc
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKD 257 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~ 257 (298)
-.+|+.+.+.+++|++. ++++|.|+.....+...++.. |+. .+.++.+ -+++....++++|+-+-+.
T Consensus 29 Gklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~-gi~----~~rv~a~-------a~~e~K~~ii~eLkk~~~k 95 (152)
T COG4087 29 GKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFV-GIP----VERVFAG-------ADPEMKAKIIRELKKRYEK 95 (152)
T ss_pred cEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHc-CCc----eeeeecc-------cCHHHHHHHHHHhcCCCcE
Confidence 36999999999999999 999999999888888777776 765 3455543 3466778899999876699
Q ss_pred EEEEecChhhHHHHHHcCCeEEEEc
Q 022348 258 CLVVEDSVIGLQAATRAGMACVITY 282 (298)
Q Consensus 258 ~~~vgD~~~Di~~a~~aG~~~v~~~ 282 (298)
|+||||+.||+.+.+++....+.+.
T Consensus 96 ~vmVGnGaND~laLr~ADlGI~tiq 120 (152)
T COG4087 96 VVMVGNGANDILALREADLGICTIQ 120 (152)
T ss_pred EEEecCCcchHHHhhhcccceEEec
Confidence 9999999999999999988855444
No 152
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=98.44 E-value=1.7e-06 Score=83.38 Aligned_cols=90 Identities=18% Similarity=0.174 Sum_probs=70.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcE
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDC 258 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~ 258 (298)
.++||+.+.+++|++.|++++++|+.....+..+.+++ |+..+ ++ ..+..| ..++++++ ....+
T Consensus 568 ~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~l-gi~~~--~~------~~p~~K------~~~v~~l~-~~~~v 631 (741)
T PRK11033 568 TLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGEL-GIDFR--AG------LLPEDK------VKAVTELN-QHAPL 631 (741)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-CCCee--cC------CCHHHH------HHHHHHHh-cCCCE
Confidence 68999999999999999999999999999999999998 88633 21 112222 22455554 34689
Q ss_pred EEEecChhhHHHHHHcCCeEEEEcCC
Q 022348 259 LVVEDSVIGLQAATRAGMACVITYTS 284 (298)
Q Consensus 259 ~~vgD~~~Di~~a~~aG~~~v~~~~~ 284 (298)
+||||+.||..+++.+++...+.++.
T Consensus 632 ~mvGDgiNDapAl~~A~vgia~g~~~ 657 (741)
T PRK11033 632 AMVGDGINDAPAMKAASIGIAMGSGT 657 (741)
T ss_pred EEEECCHHhHHHHHhCCeeEEecCCC
Confidence 99999999999999999887665443
No 153
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=98.41 E-value=3e-06 Score=64.68 Aligned_cols=95 Identities=20% Similarity=0.216 Sum_probs=65.1
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhHH---HHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCC
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVI---LCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEK 256 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~---~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~ 256 (298)
+-.-+.+|+.-.+++|-.++.+|+.....++ ..|...+.+..+ .-.++.++ ++||...-....++.-++
T Consensus 115 PKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m--~pv~f~Gd---k~k~~qy~Kt~~i~~~~~--- 186 (237)
T COG3700 115 PKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNM--NPVIFAGD---KPKPGQYTKTQWIQDKNI--- 186 (237)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCC--cceeeccC---CCCcccccccHHHHhcCc---
Confidence 3345677888899999999999998755444 344444466554 34555554 234443344455666666
Q ss_pred cEEEEecChhhHHHHHHcCCeEE-EEcC
Q 022348 257 DCLVVEDSVIGLQAATRAGMACV-ITYT 283 (298)
Q Consensus 257 ~~~~vgD~~~Di~~a~~aG~~~v-~~~~ 283 (298)
-+|.||+-+|+-+|+.+|.+.| ++..
T Consensus 187 -~IhYGDSD~Di~AAkeaG~RgIRilRA 213 (237)
T COG3700 187 -RIHYGDSDNDITAAKEAGARGIRILRA 213 (237)
T ss_pred -eEEecCCchhhhHHHhcCccceeEEec
Confidence 4899999999999999999988 4443
No 154
>PLN02423 phosphomannomutase
Probab=98.40 E-value=1.9e-07 Score=78.03 Aligned_cols=48 Identities=4% Similarity=-0.172 Sum_probs=37.6
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCcEEEEec----ChhhHHHHHHcCCeEEEEcCCCc
Q 022348 234 VKQKKPDPSIYVTAAKRLGISEKDCLVVED----SVIGLQAATRAGMACVITYTSST 286 (298)
Q Consensus 234 ~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD----~~~Di~~a~~aG~~~v~~~~~~~ 286 (298)
...+--+..+++.++ +++++++||| +.||++|.+.-|..++-|.++..
T Consensus 184 ~~~gvnKg~al~~L~-----~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~~~~ 235 (245)
T PLN02423 184 FPQGWDKTYCLQFLE-----DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTSPDD 235 (245)
T ss_pred eeCCCCHHHHHHHhc-----CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCCHHH
Confidence 334444556666665 8999999999 69999999999999997777644
No 155
>PTZ00174 phosphomannomutase; Provisional
Probab=98.38 E-value=7.8e-07 Score=74.49 Aligned_cols=45 Identities=4% Similarity=-0.169 Sum_probs=36.3
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCcEEEEec----ChhhHHHHHHcCCeEEEEc
Q 022348 234 VKQKKPDPSIYVTAAKRLGISEKDCLVVED----SVIGLQAATRAGMACVITY 282 (298)
Q Consensus 234 ~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD----~~~Di~~a~~aG~~~v~~~ 282 (298)
...+-.+..+.+.+++. ++++++||| +.||++|.+.+|..++.+.
T Consensus 183 ~~~gvsKg~al~~L~~~----~~eviafGD~~~~~~NDieMl~~~~~~g~~v~ 231 (247)
T PTZ00174 183 FPKGWDKTYCLRHLEND----FKEIHFFGDKTFEGGNDYEIYNDPRTIGHSVK 231 (247)
T ss_pred eeCCCcHHHHHHHHHhh----hhhEEEEcccCCCCCCcHhhhhcCCCceEEeC
Confidence 34455567888888888 599999999 8999999998887766555
No 156
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=98.38 E-value=7.1e-06 Score=63.51 Aligned_cols=97 Identities=16% Similarity=0.188 Sum_probs=59.0
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhHH---HHHHHHh--CCccccCcceEEeCCC---------CCCCCC---CHH
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVI---LCLENLI--GMERFEGLDCFLAGDD---------VKQKKP---DPS 242 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~---~~l~~~~--~l~~~~~fd~v~~~~~---------~~~~KP---~~~ 242 (298)
..|++.+++++++++|+++.++|+....... ..++.+. +. .+. ...++.+.. +...+| +.+
T Consensus 28 ~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~-~lp-~g~li~~~g~~~~~~~~e~i~~~~~~~K~~ 105 (157)
T smart00775 28 THPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGH-NLP-HGPVLLSPDRLFAALHREVISKKPEVFKIA 105 (157)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccc-cCC-CceEEEcCCcchhhhhcccccCCHHHHHHH
Confidence 5689999999999999999999999877654 4554420 11 110 123333322 112333 333
Q ss_pred HHHHHHHHhCCCCCc-EEEEecChhhHHHHHHcCCeE
Q 022348 243 IYVTAAKRLGISEKD-CLVVEDSVIGLQAATRAGMAC 278 (298)
Q Consensus 243 ~~~~~~~~lgi~~~~-~~~vgD~~~Di~~a~~aG~~~ 278 (298)
..+.+.+.+.-.--. +..+||+.+|+++=+++|+..
T Consensus 106 ~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~~ 142 (157)
T smart00775 106 CLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIPP 142 (157)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCCh
Confidence 444444433211112 334788899999999999985
No 157
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=98.36 E-value=4.5e-06 Score=70.56 Aligned_cols=48 Identities=6% Similarity=0.053 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHc----CCeEEEEcC
Q 022348 236 QKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRA----GMACVITYT 283 (298)
Q Consensus 236 ~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~a----G~~~v~~~~ 283 (298)
.+.-+....+.+++.+|+..+++++|||+.||..|.+.+ |+.+.+-++
T Consensus 171 ~g~~Kg~al~~ll~~~~~~~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg~a 222 (266)
T PRK10187 171 RGTNKGEAIAAFMQEAPFAGRTPVFVGDDLTDEAGFAVVNRLGGISVKVGTG 222 (266)
T ss_pred CCCCHHHHHHHHHHhcCCCCCeEEEEcCCccHHHHHHHHHhcCCeEEEECCC
Confidence 344567899999999999999999999999999999998 766545443
No 158
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=98.33 E-value=2e-05 Score=62.93 Aligned_cols=102 Identities=18% Similarity=0.231 Sum_probs=80.3
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhC--C----ccccCcceEEeCCCCCCCCCCHHHHHHHHHHhC
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIG--M----ERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLG 252 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~--l----~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lg 252 (298)
..++++...++.-+..|++++|.|.+.......++..-.. + ..| ||.-+ -.|-....|..+.+.+|
T Consensus 123 ~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllfg~s~~gdl~~y~~gy--fDt~i------G~K~e~~sy~~I~~~Ig 194 (254)
T KOG2630|consen 123 HVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLFGYSDAGDLRKYISGY--FDTTI------GLKVESQSYKKIGHLIG 194 (254)
T ss_pred cccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHHcccCcchHHHHhhhh--hhccc------cceehhHHHHHHHHHhC
Confidence 6899999999999999999999999988766555543201 1 112 33322 24667789999999999
Q ss_pred CCCCcEEEEecChhhHHHHHHcCCeEEEEcCCCchh
Q 022348 253 ISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAE 288 (298)
Q Consensus 253 i~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~ 288 (298)
.++.+++|+-|......+|+.+|..+.++..|.+..
T Consensus 195 ~s~~eiLfLTd~~~Ea~aa~~aGl~a~l~~rPgna~ 230 (254)
T KOG2630|consen 195 KSPREILFLTDVPREAAAARKAGLQAGLVSRPGNAP 230 (254)
T ss_pred CChhheEEeccChHHHHHHHhcccceeeeecCCCCC
Confidence 999999999999999999999999988766665544
No 159
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=98.32 E-value=9.7e-07 Score=73.76 Aligned_cols=41 Identities=15% Similarity=-0.062 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHc-------CCeEEEE
Q 022348 241 PSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRA-------GMACVIT 281 (298)
Q Consensus 241 ~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~a-------G~~~v~~ 281 (298)
...++.+++++++.+.++++|||+.+|+.|++.+ |..++.+
T Consensus 169 g~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v 216 (244)
T TIGR00685 169 GEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPI 216 (244)
T ss_pred HHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEE
Confidence 5899999999999999999999999999999998 5556644
No 160
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=98.29 E-value=3.6e-06 Score=79.33 Aligned_cols=93 Identities=12% Similarity=0.179 Sum_probs=72.3
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcE
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDC 258 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~ 258 (298)
.+.||+.+.+++|++.|+++.++|+.+...+..+.+++ |++.+ +. ... |+-...+.+++.-....+
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~l-GI~~v------~a-----~~~--PedK~~~v~~lq~~g~~V 511 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEA-GVDDF------IA-----EAT--PEDKIALIRQEQAEGKLV 511 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-CCCEE------Ec-----CCC--HHHHHHHHHHHHHcCCeE
Confidence 58899999999999999999999999999999999998 88654 21 122 333344444443334579
Q ss_pred EEEecChhhHHHHHHcCCeEEEEcCCC
Q 022348 259 LVVEDSVIGLQAATRAGMACVITYTSS 285 (298)
Q Consensus 259 ~~vgD~~~Di~~a~~aG~~~v~~~~~~ 285 (298)
.|+||+.||..+.+.+++...+..+..
T Consensus 512 amvGDG~NDapAL~~AdvGiAm~~gt~ 538 (675)
T TIGR01497 512 AMTGDGTNDAPALAQADVGVAMNSGTQ 538 (675)
T ss_pred EEECCCcchHHHHHhCCEeEEeCCCCH
Confidence 999999999999999999977765433
No 161
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=98.27 E-value=5.1e-05 Score=63.42 Aligned_cols=102 Identities=14% Similarity=0.212 Sum_probs=73.2
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHh--CCccccCcceEE-------------eCCC----------
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLI--GMERFEGLDCFL-------------AGDD---------- 233 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~--~l~~~~~fd~v~-------------~~~~---------- 233 (298)
..-+.+.+++..|+++|+++..+|..........++.|- |++ |+... ....
T Consensus 81 lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~----fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIl 156 (252)
T PF11019_consen 81 LIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGID----FSSSSFPEDGIISFPVFDSALSRAPSFYDGIL 156 (252)
T ss_pred EcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCC----ccccccccCcceecccccCCCCCCceeecCeE
Confidence 466899999999999999999999998776665555552 443 22110 0000
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHH----cCCeEE-EEcCC
Q 022348 234 VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATR----AGMACV-ITYTS 284 (298)
Q Consensus 234 ~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~----aG~~~v-~~~~~ 284 (298)
+..+-++..++..++.+.|..|+.++||+|+..+++.... .|+..+ +.+++
T Consensus 157 ft~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt~ 212 (252)
T PF11019_consen 157 FTGGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYTG 212 (252)
T ss_pred EeCCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEcc
Confidence 1133456789999999999999999999999988876554 588876 44443
No 162
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=98.21 E-value=8.7e-06 Score=76.85 Aligned_cols=97 Identities=12% Similarity=0.226 Sum_probs=76.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcE
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDC 258 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~ 258 (298)
.+.||+.+.+++||+.|+++.++|+.+...+..+.+++ |++++ |. .-.|+-...+.+++.-.-+-+
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~el-GI~~v--~A-----------~~~PedK~~iV~~lQ~~G~~V 506 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEA-GVDRF--VA-----------ECKPEDKINVIREEQAKGHIV 506 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCceE--Ec-----------CCCHHHHHHHHHHHHhCCCEE
Confidence 58899999999999999999999999999999999998 88754 21 123455555666665445679
Q ss_pred EEEecChhhHHHHHHcCCeEEEEcCCCchhH
Q 022348 259 LVVEDSVIGLQAATRAGMACVITYTSSTAEQ 289 (298)
Q Consensus 259 ~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~ 289 (298)
.|+||+.||..+.++|.++..+..|..-+++
T Consensus 507 aMtGDGvNDAPALa~ADVGIAMgsGTdvAke 537 (673)
T PRK14010 507 AMTGDGTNDAPALAEANVGLAMNSGTMSAKE 537 (673)
T ss_pred EEECCChhhHHHHHhCCEEEEeCCCCHHHHH
Confidence 9999999999999999999777655443433
No 163
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=98.20 E-value=5.5e-06 Score=81.78 Aligned_cols=104 Identities=17% Similarity=0.202 Sum_probs=77.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccC--cceEEeCCC----------------CCCCCCC
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEG--LDCFLAGDD----------------VKQKKPD 240 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~--fd~v~~~~~----------------~~~~KP~ 240 (298)
+++|++.+.++.|++.|++++++|+.....+..+.+++ |+..-.. .+..+.+.+ .-.++-.
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~-gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~ 615 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRI-GIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRVE 615 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHc-CCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEecC
Confidence 47999999999999999999999999988899999998 7753110 112233211 1123344
Q ss_pred HHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcC
Q 022348 241 PSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYT 283 (298)
Q Consensus 241 ~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~ 283 (298)
|+-...+++.++-..+.+.|+||+.||+.|.+.|+++..+..+
T Consensus 616 P~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~AdVGia~g~g 658 (917)
T TIGR01116 616 PSHKSELVELLQEQGEIVAMTGDGVNDAPALKKADIGIAMGSG 658 (917)
T ss_pred HHHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCCeeEECCCC
Confidence 5556777777776677899999999999999999998665433
No 164
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=98.19 E-value=8.7e-06 Score=76.94 Aligned_cols=97 Identities=14% Similarity=0.220 Sum_probs=75.7
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcE
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDC 258 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~ 258 (298)
.+.||+.+.+++||+.|+++.++|+.+...+..+.+++ |++.+ +. .-.|+-...+.+++.-..+-+
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~el-GId~v------~A-------~~~PedK~~iV~~lQ~~G~~V 510 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEA-GVDDF------LA-------EATPEDKLALIRQEQAEGRLV 510 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCcEE------Ec-------cCCHHHHHHHHHHHHHcCCeE
Confidence 36899999999999999999999999999999999998 88653 21 123445555555554444669
Q ss_pred EEEecChhhHHHHHHcCCeEEEEcCCCchhH
Q 022348 259 LVVEDSVIGLQAATRAGMACVITYTSSTAEQ 289 (298)
Q Consensus 259 ~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~ 289 (298)
.|+||+.||..+.++|.++..+..|..-.++
T Consensus 511 aMtGDGvNDAPALa~ADVGIAMgsGTdvAke 541 (679)
T PRK01122 511 AMTGDGTNDAPALAQADVGVAMNSGTQAAKE 541 (679)
T ss_pred EEECCCcchHHHHHhCCEeEEeCCCCHHHHH
Confidence 9999999999999999999777755444443
No 165
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=98.16 E-value=0.00023 Score=65.12 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=59.4
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCc------ceEEeCCCCCCCCC-C-HHHHHHHHHHh
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGL------DCFLAGDDVKQKKP-D-PSIYVTAAKRL 251 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~f------d~v~~~~~~~~~KP-~-~~~~~~~~~~l 251 (298)
+.|++.+ .++++|.. +|+|......++..++.++|++..-+- +..+++.-.+. .+ . .+-...+.+.+
T Consensus 111 l~~~a~~---~~~~~g~~-vvVSASp~~~Vepfa~~~LGid~VIgTeLev~~~G~~TG~i~g~-~~c~Ge~Kv~rl~~~~ 185 (497)
T PLN02177 111 VHPETWR---VFNSFGKR-YIITASPRIMVEPFVKTFLGADKVLGTELEVSKSGRATGFMKKP-GVLVGDHKRDAVLKEF 185 (497)
T ss_pred cCHHHHH---HHHhCCCE-EEEECCcHHHHHHHHHHcCCCCEEEecccEECcCCEEeeeecCC-CCCccHHHHHHHHHHh
Confidence 6666555 44567754 999999999999888764376643111 22233321111 01 0 11122233556
Q ss_pred CCCCCcEEEEecChhhHHHHHHcCCeEEEEc
Q 022348 252 GISEKDCLVVEDSVIGLQAATRAGMACVITY 282 (298)
Q Consensus 252 gi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~ 282 (298)
|.+... +++||+.+|..+...++-..++..
T Consensus 186 g~~~~~-~aYgDS~sD~plL~~a~e~y~V~~ 215 (497)
T PLN02177 186 GDALPD-LGLGDRETDHDFMSICKEGYMVPR 215 (497)
T ss_pred CCCCce-EEEECCccHHHHHHhCCccEEeCC
Confidence 755444 999999999999999998876544
No 166
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.15 E-value=1.1e-05 Score=76.37 Aligned_cols=96 Identities=18% Similarity=0.221 Sum_probs=74.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcE
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDC 258 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~ 258 (298)
.+.|+..+.+++||+.|+++.++|+.+...++.+.+++ |++.+ +- + -+ |+-.....+++.-.-..+
T Consensus 537 ~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~l-GId~v--~A-----e----ll--PedK~~~V~~l~~~g~~V 602 (713)
T COG2217 537 ELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKEL-GIDEV--RA-----E----LL--PEDKAEIVRELQAEGRKV 602 (713)
T ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-ChHhh--ec-----c----CC--cHHHHHHHHHHHhcCCEE
Confidence 58899999999999999999999999999999999998 88765 21 1 22 223344555554344679
Q ss_pred EEEecChhhHHHHHHcCCeEEEEcCCCchh
Q 022348 259 LVVEDSVIGLQAATRAGMACVITYTSSTAE 288 (298)
Q Consensus 259 ~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~ 288 (298)
.||||+.||..+...|.+...+..|..-..
T Consensus 603 amVGDGINDAPALA~AdVGiAmG~GtDvA~ 632 (713)
T COG2217 603 AMVGDGINDAPALAAADVGIAMGSGTDVAI 632 (713)
T ss_pred EEEeCCchhHHHHhhcCeeEeecCCcHHHH
Confidence 999999999999999999876666544333
No 167
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=98.08 E-value=2.4e-05 Score=70.38 Aligned_cols=105 Identities=15% Similarity=0.196 Sum_probs=72.3
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCC------ccccCcceEEeCCC-----------------C
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGM------ERFEGLDCFLAGDD-----------------V 234 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l------~~~~~fd~v~~~~~-----------------~ 234 (298)
+...|.+..+|+.||++|.++.++||+.-..+...++.+.|- +...-||.|+.... .
T Consensus 182 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~~~ 261 (448)
T PF05761_consen 182 IHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDTET 261 (448)
T ss_dssp EE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEETTT
T ss_pred ccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEECCC
Confidence 456789999999999999999999999999999999998766 43334999887532 0
Q ss_pred CCCCCC-------------HHHHHHHHHHhCCCCCcEEEEecCh-hhHHHHHHc-CCeEEEEc
Q 022348 235 KQKKPD-------------PSIYVTAAKRLGISEKDCLVVEDSV-IGLQAATRA-GMACVITY 282 (298)
Q Consensus 235 ~~~KP~-------------~~~~~~~~~~lgi~~~~~~~vgD~~-~Di~~a~~a-G~~~v~~~ 282 (298)
+..+.. .--...+.+.+|...+++++|||+. .|+..++.. ||.|+.+-
T Consensus 262 g~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii 324 (448)
T PF05761_consen 262 GKLKWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAII 324 (448)
T ss_dssp SSEECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE-
T ss_pred CccccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhccccceEEEEEe
Confidence 100000 0136777788899999999999999 599988887 99998653
No 168
>PLN02645 phosphoglycolate phosphatase
Probab=98.07 E-value=3.4e-05 Score=66.85 Aligned_cols=90 Identities=17% Similarity=0.135 Sum_probs=68.0
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHH---HHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCC
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCL---ENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISE 255 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l---~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~ 255 (298)
.++||+.++|++|+++|++++++||+........+ +.+ |+... ++.|+++. ......+++.+...
T Consensus 44 ~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~l-Gi~~~--~~~I~ts~---------~~~~~~l~~~~~~~ 111 (311)
T PLN02645 44 KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESL-GLNVT--EEEIFSSS---------FAAAAYLKSINFPK 111 (311)
T ss_pred ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHC-CCCCC--hhhEeehH---------HHHHHHHHhhccCC
Confidence 47899999999999999999999999855444444 555 66543 67776653 24555666666655
Q ss_pred CcEEEEecChhhHHHHHHcCCeEEE
Q 022348 256 KDCLVVEDSVIGLQAATRAGMACVI 280 (298)
Q Consensus 256 ~~~~~vgD~~~Di~~a~~aG~~~v~ 280 (298)
...++|+++..+.+.++.+|+.++.
T Consensus 112 ~~~V~viG~~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 112 DKKVYVIGEEGILEELELAGFQYLG 136 (311)
T ss_pred CCEEEEEcCHHHHHHHHHCCCEEec
Confidence 5568888889999999999998754
No 169
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=98.03 E-value=1.7e-05 Score=78.06 Aligned_cols=100 Identities=14% Similarity=0.160 Sum_probs=76.9
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCC----------------CCCCCHH
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVK----------------QKKPDPS 242 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~----------------~~KP~~~ 242 (298)
++.|++.+.++.|++.|+++.++|+.....+..+.+++ |+.. +.++++.+.. ..+-.|+
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~l-GI~~----~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe 624 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEV-GLDA----GEVLIGSDIETLSDDELANLAERTTLFARLTPM 624 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-CCCc----cCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHH
Confidence 47899999999999999999999999999999999998 8852 3344443321 1234455
Q ss_pred HHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcC
Q 022348 243 IYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYT 283 (298)
Q Consensus 243 ~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~ 283 (298)
-...+.+.+.-...-+.|+||+.||..+.+.|.++..+..+
T Consensus 625 ~K~~IV~~Lq~~G~vVam~GDGvNDaPALk~ADVGIAmg~g 665 (902)
T PRK10517 625 HKERIVTLLKREGHVVGFMGDGINDAPALRAADIGISVDGA 665 (902)
T ss_pred HHHHHHHHHHHCCCEEEEECCCcchHHHHHhCCEEEEeCCc
Confidence 55556665544456799999999999999999999776544
No 170
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=98.01 E-value=1.5e-05 Score=77.11 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=74.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccc-cCcceEEeCCCC----------------CCCCCCH
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERF-EGLDCFLAGDDV----------------KQKKPDP 241 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~-~~fd~v~~~~~~----------------~~~KP~~ 241 (298)
++.|++.+.++.|++.|+++.++|+.....+..+.+++ |+..- ..-+.+..+++. ...+-.|
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~l-GI~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfAr~~P 520 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRL-GLGTNIYTADVLLKGDNRDDLPSGELGEMVEDADGFAEVFP 520 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCCCCCcCHHHhcCCcchhhCCHHHHHHHHHhCCEEEecCH
Confidence 58899999999999999999999999999999999998 88531 000111111110 1223345
Q ss_pred HHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEc
Q 022348 242 SIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITY 282 (298)
Q Consensus 242 ~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~ 282 (298)
+-...+.+.+.-..+.+.|+||+.||..+.+.|.++..+..
T Consensus 521 e~K~~iV~~lq~~G~~VamvGDGvNDapAL~~AdVGIAm~~ 561 (755)
T TIGR01647 521 EHKYEIVEILQKRGHLVGMTGDGVNDAPALKKADVGIAVAG 561 (755)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCcccHHHHHhCCeeEEecC
Confidence 55555566565455679999999999999999999976653
No 171
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=98.00 E-value=2.6e-05 Score=76.56 Aligned_cols=101 Identities=14% Similarity=0.180 Sum_probs=75.0
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCC----------------CCCCCHH
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVK----------------QKKPDPS 242 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~----------------~~KP~~~ 242 (298)
++.|++.+.+++|++.|+++.++|+.....+..+.+++ |+.. +.++.+.+.. ...-.|+
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~l-GI~~----~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe 589 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEV-GIDA----NDFLLGADIEELSDEELARELRKYHIFARLTPM 589 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-CCCC----CCeeecHhhhhCCHHHHHHHhhhCeEEEECCHH
Confidence 47899999999999999999999999999999999998 8852 2233333211 1223444
Q ss_pred HHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCC
Q 022348 243 IYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 284 (298)
Q Consensus 243 ~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~ 284 (298)
-...+.+.+.-.-+.+.|+||+.||..+.+.|.++..+..+.
T Consensus 590 ~K~~iV~~lq~~G~vVam~GDGvNDapALk~AdVGIAmg~gt 631 (867)
T TIGR01524 590 QKSRIIGLLKKAGHTVGFLGDGINDAPALRKADVGISVDTAA 631 (867)
T ss_pred HHHHHHHHHHhCCCEEEEECCCcccHHHHHhCCEEEEeCCcc
Confidence 444555555434467999999999999999999997766443
No 172
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=97.96 E-value=2.7e-05 Score=60.14 Aligned_cols=84 Identities=13% Similarity=0.198 Sum_probs=64.2
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc-cccCc-ceEEeCCCCCCCCCCHHHHHHHH-HHhCC
Q 022348 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME-RFEGL-DCFLAGDDVKQKKPDPSIYVTAA-KRLGI 253 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~-~~~~f-d~v~~~~~~~~~KP~~~~~~~~~-~~lgi 253 (298)
.+.++||+.++|++|++. ++++|+|++....+..+++.+ +.. .+ | +.+++.++... + +.+-+ ..+|.
T Consensus 56 ~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~l-dp~~~~--F~~ri~~rd~~~~--~----~~KdL~~i~~~ 125 (156)
T TIGR02250 56 LTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLI-DPDGKY--FGDRIISRDESGS--P----HTKSLLRLFPA 125 (156)
T ss_pred EEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHh-CcCCCe--eccEEEEeccCCC--C----ccccHHHHcCC
Confidence 357999999999999966 999999999999999999998 766 46 7 67777765431 1 11123 34577
Q ss_pred CCCcEEEEecChhhHHH
Q 022348 254 SEKDCLVVEDSVIGLQA 270 (298)
Q Consensus 254 ~~~~~~~vgD~~~Di~~ 270 (298)
+.+.+++|+|++.-...
T Consensus 126 d~~~vvivDd~~~~~~~ 142 (156)
T TIGR02250 126 DESMVVIIDDREDVWPW 142 (156)
T ss_pred CcccEEEEeCCHHHhhc
Confidence 88999999999954433
No 173
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=97.96 E-value=0.00077 Score=54.65 Aligned_cols=88 Identities=9% Similarity=0.015 Sum_probs=64.8
Q ss_pred EEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCe
Q 022348 198 VAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMA 277 (298)
Q Consensus 198 i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~ 277 (298)
-++||++.-.......=. .+++.++..+.|+++-.+ +| .++|+.+.+++|-+.-.-++|||+...-.+|+..+|+
T Consensus 178 NvLVTs~qLVPaLaKcLL-y~L~~~f~ieNIYSa~kv--GK--~~cFe~I~~Rfg~p~~~f~~IGDG~eEe~aAk~l~wP 252 (274)
T TIGR01658 178 NVLVTSGQLIPSLAKCLL-FRLDTIFRIENVYSSIKV--GK--LQCFKWIKERFGHPKVRFCAIGDGWEECTAAQAMNWP 252 (274)
T ss_pred EEEEEcCccHHHHHHHHH-hccCCccccccccchhhc--ch--HHHHHHHHHHhCCCCceEEEeCCChhHHHHHHhcCCC
Confidence 355665553323322323 488888777888877654 35 6799999999998778899999999999999999999
Q ss_pred EEEEcCCCchhHh
Q 022348 278 CVITYTSSTAEQV 290 (298)
Q Consensus 278 ~v~~~~~~~~~~~ 290 (298)
++-+........+
T Consensus 253 Fw~I~~h~Dl~~l 265 (274)
T TIGR01658 253 FVKIDLHPDSSHR 265 (274)
T ss_pred eEEeecCCCHHHh
Confidence 9877665555443
No 174
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=97.96 E-value=2.8e-05 Score=76.55 Aligned_cols=101 Identities=15% Similarity=0.152 Sum_probs=77.1
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCC----------------CCCCCHH
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVK----------------QKKPDPS 242 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~----------------~~KP~~~ 242 (298)
++.|++.+.++.|++.|+++.++|+.....+..+.+++ |+.. +.++++.+.. ...-.|+
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~l-GI~~----~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe 624 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREV-GLEP----GEPLLGTEIEAMDDAALAREVEERTVFAKLTPL 624 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCCC----CCccchHhhhhCCHHHHHHHhhhCCEEEEeCHH
Confidence 57899999999999999999999999999999999998 8852 2334443321 2233555
Q ss_pred HHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEcCC
Q 022348 243 IYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 284 (298)
Q Consensus 243 ~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~ 284 (298)
-...+.+.+.-.-+-+.|+||+.||..+.+.|.++..+..|.
T Consensus 625 ~K~~iV~~Lq~~G~vVamtGDGvNDaPALk~ADVGIAmg~gt 666 (903)
T PRK15122 625 QKSRVLKALQANGHTVGFLGDGINDAPALRDADVGISVDSGA 666 (903)
T ss_pred HHHHHHHHHHhCCCEEEEECCCchhHHHHHhCCEEEEeCccc
Confidence 556666666544567999999999999999999997665443
No 175
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=97.95 E-value=2.7e-05 Score=77.29 Aligned_cols=100 Identities=18% Similarity=0.167 Sum_probs=75.0
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCC----------------CCCCCHH
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVK----------------QKKPDPS 242 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~----------------~~KP~~~ 242 (298)
++.|++.+.++.|++.|+++.++|+.....+..+.+++ |+..- -..++++.+.. .+.-.|+
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~-GI~~~--~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe 655 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNC-GILTF--GGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPL 655 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHc-CCCCC--CceEeeHHHhhhCCHHHHHHHhccCeEEEECCHH
Confidence 57889999999999999999999999999999999998 88632 12344443311 1233455
Q ss_pred HHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEE
Q 022348 243 IYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVIT 281 (298)
Q Consensus 243 ~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~ 281 (298)
-...+.+.+.-.-+.+.|+||+.||..+.++|.++..+.
T Consensus 656 ~K~~iV~~lq~~g~vVam~GDGvNDapALk~AdVGIAmg 694 (941)
T TIGR01517 656 DKQLLVLMLKDMGEVVAVTGDGTNDAPALKLADVGFSMG 694 (941)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCchHHHHHhCCcceecC
Confidence 555555555434457999999999999999999886654
No 176
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.95 E-value=0.00013 Score=60.56 Aligned_cols=82 Identities=22% Similarity=0.352 Sum_probs=65.2
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCC------------------------
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVK------------------------ 235 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~------------------------ 235 (298)
..|.+.+.|.+|++.|..+++=|-|+.+++.+.++.+ ++.++ ||.++++....
T Consensus 143 r~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~-~L~~~--Fd~ii~~G~~~~~~~~~~~~d~~~~~~f~~~~Fyl 219 (297)
T PF05152_consen 143 RDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKEL-KLEGY--FDIIICGGNKAGEYNSRVIVDRQYKVIFVSKPFYL 219 (297)
T ss_pred CChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHh-CCccc--cEEEEeCCccCCcCCccceeecccceEEeccceEE
Confidence 4467788899999999999999999999999999999 99998 99998864311
Q ss_pred -------CCCCCHHHHHHHHHHhCCCC-CcEEEEecCh
Q 022348 236 -------QKKPDPSIYVTAAKRLGISE-KDCLVVEDSV 265 (298)
Q Consensus 236 -------~~KP~~~~~~~~~~~lgi~~-~~~~~vgD~~ 265 (298)
.+| +|.+....+++.|+.- +.+--|+|-.
T Consensus 220 Dv~~~~~LPK-SPrVVL~yL~k~gvny~KtiTLVDDL~ 256 (297)
T PF05152_consen 220 DVTNVNNLPK-SPRVVLWYLRKKGVNYFKTITLVDDLK 256 (297)
T ss_pred eCCcCCCCCC-CCeehHHHHHHcCCceeeeEEEeccCc
Confidence 122 4667778888888874 6666777766
No 177
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.00022 Score=54.12 Aligned_cols=96 Identities=18% Similarity=0.126 Sum_probs=63.8
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcE
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDC 258 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~ 258 (298)
.+..++...|..++++ .+++.+|.......+..-..+ -... .++|.+...+- ..| -.+.+.++++
T Consensus 72 l~~q~v~~~L~~~~e~-~~L~~itar~~dl~~iT~~~l-~~q~-ih~~~l~i~g~--h~K------V~~vrth~id---- 136 (194)
T COG5663 72 LLAQLVKQVLPSLKEE-HRLIYITARKADLTRITYAWL-FIQN-IHYDHLEIVGL--HHK------VEAVRTHNID---- 136 (194)
T ss_pred HHHHHHHHHhHHHHhh-ceeeeeehhhHHHHHHHHHHH-HHhc-cchhhhhhhcc--ccc------chhhHhhccC----
Confidence 3555778888888888 678888887766555443333 2222 12454432221 223 2367888886
Q ss_pred EEEecCh-hhHHHHHHcCCeEEEEcCCCchhH
Q 022348 259 LVVEDSV-IGLQAATRAGMACVITYTSSTAEQ 289 (298)
Q Consensus 259 ~~vgD~~-~Di~~a~~aG~~~v~~~~~~~~~~ 289 (298)
+|+.|+. |-++.|+.+|++.+.++++.+.+-
T Consensus 137 lf~ed~~~na~~iAk~~~~~vilins~ynRkp 168 (194)
T COG5663 137 LFFEDSHDNAGQIAKNAGIPVILINSPYNRKP 168 (194)
T ss_pred ccccccCchHHHHHHhcCCcEEEecCcccccc
Confidence 6999998 577778889999999999887654
No 178
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=97.86 E-value=6.3e-05 Score=75.13 Aligned_cols=102 Identities=14% Similarity=0.153 Sum_probs=76.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccC--------cceEEeCCCCC---------------
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEG--------LDCFLAGDDVK--------------- 235 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~--------fd~v~~~~~~~--------------- 235 (298)
++.|++.+.++.|++.|++++++|+.....+..+.+++ |+..-.. -+.++++.+..
T Consensus 646 p~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~-Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~~ 724 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEV-GIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALCL 724 (1053)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHc-CCCCccccccccccccceeeehHHhhhcCHHHHHHHhhcCe
Confidence 57899999999999999999999999999999999998 8853100 02355554322
Q ss_pred -CCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEE
Q 022348 236 -QKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVIT 281 (298)
Q Consensus 236 -~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~ 281 (298)
.+.-.|+-...+.+.+.-..+.+.|+||+.||..+.+.|.++..+.
T Consensus 725 V~ar~sP~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdVGIAmg 771 (1053)
T TIGR01523 725 VIARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMANVGIAMG 771 (1053)
T ss_pred EEEecCHHHHHHHHHHHHhcCCeeEEeCCCcchHHHHHhCCccEecC
Confidence 1334555555555555444567899999999999999999997654
No 179
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=97.83 E-value=0.0003 Score=56.80 Aligned_cols=86 Identities=17% Similarity=0.207 Sum_probs=57.3
Q ss_pred CCCCCChhHHHHHHHHHHCCCeEEEEeCCChhh-HH---HHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHh
Q 022348 176 GTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSS-VI---LCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRL 251 (298)
Q Consensus 176 ~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~-~~---~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l 251 (298)
....+.||+.+++...-++|..|..+||.+... .. .-|.+. |+..... +.++.- ...|++..=++.+.+-+
T Consensus 119 ~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~-g~~~~~~-~~~llk---k~~k~Ke~R~~~v~k~~ 193 (274)
T COG2503 119 KKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSE-GLPQVLE-SHLLLK---KDKKSKEVRRQAVEKDY 193 (274)
T ss_pred cccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHc-Ccccccc-cceEEe---eCCCcHHHHHHHHhhcc
Confidence 345799999999999999999999999998775 33 334444 6655422 222222 23455544455554433
Q ss_pred CCCCCcEEEEecChhhHHH
Q 022348 252 GISEKDCLVVEDSVIGLQA 270 (298)
Q Consensus 252 gi~~~~~~~vgD~~~Di~~ 270 (298)
+-++.|||+.+|.-.
T Consensus 194 ----~iVm~vGDNl~DF~d 208 (274)
T COG2503 194 ----KIVMLVGDNLDDFGD 208 (274)
T ss_pred ----ceeeEecCchhhhcc
Confidence 448999999988654
No 180
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=97.79 E-value=0.001 Score=57.12 Aligned_cols=87 Identities=15% Similarity=0.131 Sum_probs=61.7
Q ss_pred EEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCe
Q 022348 198 VAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMA 277 (298)
Q Consensus 198 i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~ 277 (298)
-++||+..-......+-. .||..++..+.|+++-.+| | ..+|+.|.+++|- .-.-++|||+...-.+|++..|+
T Consensus 373 nVlvTttqLipalaKvLL-~gLg~~fpiENIYSa~kiG--K--escFerI~~RFg~-K~~yvvIgdG~eee~aAK~ln~P 446 (468)
T KOG3107|consen 373 NVLVTTTQLIPALAKVLL-YGLGSSFPIENIYSATKIG--K--ESCFERIQSRFGR-KVVYVVIGDGVEEEQAAKALNMP 446 (468)
T ss_pred EEEEeccchhHHHHHHHH-HhcCCcccchhhhhhhhcc--H--HHHHHHHHHHhCC-ceEEEEecCcHHHHHHHHhhCCc
Confidence 456666654333333333 4888776778888765544 4 5699999999997 34668899999999999999999
Q ss_pred EEEEcCCCchhHh
Q 022348 278 CVITYTSSTAEQV 290 (298)
Q Consensus 278 ~v~~~~~~~~~~~ 290 (298)
+.-+........+
T Consensus 447 fwrI~~h~Dl~~l 459 (468)
T KOG3107|consen 447 FWRISSHSDLDAL 459 (468)
T ss_pred eEeeccCccHHHH
Confidence 8766655554444
No 181
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.76 E-value=9.4e-05 Score=73.02 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=78.9
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCc-ceEEeCCCCC----------------CCCCCH
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGL-DCFLAGDDVK----------------QKKPDP 241 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~f-d~v~~~~~~~----------------~~KP~~ 241 (298)
++.+++.+.++.|++.|+++..+|+.....+..+.+++ |+..- .. +.++.|.+.. .++-+|
T Consensus 547 ppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~-Gi~~~-~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvsP 624 (917)
T COG0474 547 PPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKEC-GIEAE-AESALVIDGAELDALSDEELAELVEELSVFARVSP 624 (917)
T ss_pred CCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHc-CCCCC-CCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcCH
Confidence 58899999999999999999999999999999999998 87653 11 3366665422 233455
Q ss_pred HHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEc
Q 022348 242 SIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITY 282 (298)
Q Consensus 242 ~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~ 282 (298)
+-...+.+.+.-.-.-+.|.||+.||+.|.+.|.++..+..
T Consensus 625 ~qK~~IV~~lq~~g~vVamtGDGvNDapALk~ADVGIamg~ 665 (917)
T COG0474 625 EQKARIVEALQKSGHVVAMTGDGVNDAPALKAADVGIAMGG 665 (917)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCchhHHHHHhcCccEEecc
Confidence 55555655555455679999999999999999999975554
No 182
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.67 E-value=0.0002 Score=68.02 Aligned_cols=97 Identities=20% Similarity=0.228 Sum_probs=72.3
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcE
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDC 258 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~ 258 (298)
.+.||+...+..||+.|++++.+|+.+...++...+++ |+ |.|++ +-.+..| .+.++.+.+ ....+
T Consensus 723 ~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~V-Gi------~~V~a-ev~P~~K--~~~Ik~lq~----~~~~V 788 (951)
T KOG0207|consen 723 QVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQV-GI------DNVYA-EVLPEQK--AEKIKEIQK----NGGPV 788 (951)
T ss_pred ccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhh-Cc------ceEEe-ccCchhh--HHHHHHHHh----cCCcE
Confidence 47899999999999999999999999999999999988 63 44442 2222222 334444433 33669
Q ss_pred EEEecChhhHHHHHHcCCeEEEEcCCCchhH
Q 022348 259 LVVEDSVIGLQAATRAGMACVITYTSSTAEQ 289 (298)
Q Consensus 259 ~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~ 289 (298)
.||||+.||-.+...|.++..+..|...+.+
T Consensus 789 aMVGDGINDaPALA~AdVGIaig~gs~vAie 819 (951)
T KOG0207|consen 789 AMVGDGINDAPALAQADVGIAIGAGSDVAIE 819 (951)
T ss_pred EEEeCCCCccHHHHhhccceeeccccHHHHh
Confidence 9999999999999999888766666444333
No 183
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=97.60 E-value=0.001 Score=49.22 Aligned_cols=30 Identities=20% Similarity=0.301 Sum_probs=25.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhh
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSS 208 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~ 208 (298)
.+.+++.+.|+++++.|+.+.++|+.....
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~ 53 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRT 53 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence 366788899999999999999999987653
No 184
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.57 E-value=0.00044 Score=60.79 Aligned_cols=123 Identities=16% Similarity=0.228 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHh------cCCCCCChhHHHHHHHHHHCCCeEEEEeCCC--hhhHHHHHHHHhCCccccCcce
Q 022348 156 KLIDLIQDWKTERYQQIIK------SGTVEPRPGVLRLMDEAKAAGKKVAVCSAAT--KSSVILCLENLIGMERFEGLDC 227 (298)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~------~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~--~~~~~~~l~~~~~l~~~~~fd~ 227 (298)
+.++.+.+.+...+.++.. ...+-+.....++.+++.++|.+|.++|.-- ...++..|... |-+-. ---
T Consensus 70 eil~~~~q~~p~~f~~~~~lEI~tEKevLypn~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L~s~-g~d~~--nip 146 (635)
T COG5610 70 EILNLLQQNFPLSFQELMKLEINTEKEVLYPNKKNIELVEEAIKNEKRVILISDMYLPSSILRTFLNSF-GPDFN--NIP 146 (635)
T ss_pred HHHHHHHhhCcHHHHHHhceeeccceeEeeccccchHHHHHHHhCCCeEEEEecccCcHHHHHHHHHhc-CCCcc--Cce
Confidence 3444445544444554442 1223345567899999999999999999743 44455566555 44422 112
Q ss_pred EEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChh-hHHHHHHcCCeEEEE
Q 022348 228 FLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVI-GLQAATRAGMACVIT 281 (298)
Q Consensus 228 v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~-Di~~a~~aG~~~v~~ 281 (298)
++.+.+.-..|.+...|..+++.-++++.+++++||+.. |..+++..|+.+...
T Consensus 147 iY~S~e~rl~KnSg~LFk~Vlk~EnVd~~~w~H~GDN~~aD~l~pk~LgI~Tlf~ 201 (635)
T COG5610 147 IYMSSEFRLKKNSGNLFKAVLKLENVDPKKWIHCGDNWVADYLKPKNLGISTLFY 201 (635)
T ss_pred eeecceeehhcccchHHHHHHhhcCCChhheEEecCchhhhhcCccccchhHHHH
Confidence 667777788899999999999999999999999999995 999999999998643
No 185
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=97.54 E-value=0.00032 Score=70.13 Aligned_cols=102 Identities=18% Similarity=0.237 Sum_probs=74.1
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccC----------------------cceEEeCCCCC-
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEG----------------------LDCFLAGDDVK- 235 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~----------------------fd~v~~~~~~~- 235 (298)
++.|++.+.++++++.|+++.++|+.....+..+.+++ |+..-.. -..+++|.+..
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~-gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~l~~ 646 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGV-GIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKD 646 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCCCCCccchhhhhhhccccccccccccccceEEEhHHhhh
Confidence 46889999999999999999999999999999999988 7732100 01345543321
Q ss_pred -----------------CCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEE
Q 022348 236 -----------------QKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVIT 281 (298)
Q Consensus 236 -----------------~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~ 281 (298)
.++-.|+-...+.+.+.-...-+.|+||+.||+.|.+.|.++..+.
T Consensus 647 l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~vv~~~GDG~ND~paLk~AdVGiamg 709 (997)
T TIGR01106 647 MTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMG 709 (997)
T ss_pred CCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHhhCCcceecC
Confidence 2333455545555555434456899999999999999999997654
No 186
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=97.45 E-value=0.0015 Score=63.27 Aligned_cols=37 Identities=5% Similarity=-0.159 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcC
Q 022348 237 KKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAG 275 (298)
Q Consensus 237 ~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG 275 (298)
+--|..+.+.+++ ++.++.++++||+.||..|.+.++
T Consensus 655 ~vnKG~al~~ll~--~~~~d~vl~~GD~~nDe~Mf~~~~ 691 (726)
T PRK14501 655 GVNKGRAVRRLLE--AGPYDFVLAIGDDTTDEDMFRALP 691 (726)
T ss_pred CCCHHHHHHHHHh--cCCCCEEEEECCCCChHHHHHhcc
Confidence 3445778888887 778899999999999999999973
No 187
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=97.44 E-value=0.0017 Score=49.69 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=57.7
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhHHH---HHHHHhCCc-cccCcceEEeC-C--------CCCCCCCCHHHHHH
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVIL---CLENLIGME-RFEGLDCFLAG-D--------DVKQKKPDPSIYVT 246 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~---~l~~~~~l~-~~~~fd~v~~~-~--------~~~~~KP~~~~~~~ 246 (298)
..||+.++.+.++++|+++.-+|+........ .|+++-.-. .+ +.--++.+ + |+- .++|+.|+.
T Consensus 28 ~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~l-P~Gpv~~sP~~l~~al~rEvi--~~~p~~fK~ 104 (157)
T PF08235_consen 28 THPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNL-PDGPVLLSPDSLFSALHREVI--SKDPEEFKI 104 (157)
T ss_pred hhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccC-CCCCEEECCcchhhhhhcccc--ccChHHHHH
Confidence 66799999999999999999999987554443 333331111 22 11223333 1 222 234544444
Q ss_pred HH-HHh-CC----CCCcEEEEecChhhHHHHHHcCCeE
Q 022348 247 AA-KRL-GI----SEKDCLVVEDSVIGLQAATRAGMAC 278 (298)
Q Consensus 247 ~~-~~l-gi----~~~~~~~vgD~~~Di~~a~~aG~~~ 278 (298)
.+ +.+ .. ...=...+|+...|+.+=+++|+..
T Consensus 105 ~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip~ 142 (157)
T PF08235_consen 105 ACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIPK 142 (157)
T ss_pred HHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCCh
Confidence 33 222 21 1122456899999999999999984
No 188
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=97.39 E-value=0.00085 Score=63.40 Aligned_cols=110 Identities=16% Similarity=0.257 Sum_probs=81.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccC-cc-eEEeCCCCC----------------CCCCC
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEG-LD-CFLAGDDVK----------------QKKPD 240 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~-fd-~v~~~~~~~----------------~~KP~ 240 (298)
+|+|++.+.++.+++.|+++..+|+.....+..+.++. |+-.... ++ ..+++.++. ..+-.
T Consensus 584 PPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~i-Gi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~~ 662 (972)
T KOG0202|consen 584 PPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREI-GIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFARAE 662 (972)
T ss_pred CCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHh-CCCcCCccccccccchhhhhcCCHHHHHHHhhcceEEEecC
Confidence 58899999999999999999999999999999999998 7754311 11 234443321 11234
Q ss_pred HHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEE-cCCCchhH
Q 022348 241 PSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVIT-YTSSTAEQ 289 (298)
Q Consensus 241 ~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~-~~~~~~~~ 289 (298)
|+-..++.+.|.-.-+=+.|-||+.||..+.+.|.++..+. +|..-.++
T Consensus 663 P~HK~kIVeaLq~~geivAMTGDGVNDApALK~AdIGIAMG~~GTdVaKe 712 (972)
T KOG0202|consen 663 PQHKLKIVEALQSRGEVVAMTGDGVNDAPALKKADIGIAMGISGTDVAKE 712 (972)
T ss_pred chhHHHHHHHHHhcCCEEEecCCCccchhhhhhcccceeecCCccHhhHh
Confidence 55666666666656677999999999999999999998765 55544444
No 189
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=97.37 E-value=0.00094 Score=67.26 Aligned_cols=41 Identities=12% Similarity=0.228 Sum_probs=38.3
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~ 220 (298)
++.|++.+.++.|++.|+++.++|+.....+..+.+++ |+-
T Consensus 656 ~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~-gii 696 (1054)
T TIGR01657 656 PLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVAREC-GIV 696 (1054)
T ss_pred CCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCC
Confidence 58899999999999999999999999999999999998 774
No 190
>PLN02580 trehalose-phosphatase
Probab=97.29 E-value=0.0058 Score=53.97 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHhCCCCCc---EEEEecChhhHHHHHH-----cCCeEEEEc
Q 022348 238 KPDPSIYVTAAKRLGISEKD---CLVVEDSVIGLQAATR-----AGMACVITY 282 (298)
Q Consensus 238 KP~~~~~~~~~~~lgi~~~~---~~~vgD~~~Di~~a~~-----aG~~~v~~~ 282 (298)
--+....+.+++.+|+...+ .++|||..+|..|.+. .|+...+-+
T Consensus 300 ~~KG~Av~~Ll~~~g~~~~d~~~pi~iGDD~TDedmF~~L~~~~~G~~I~Vgn 352 (384)
T PLN02580 300 WNKGKAVEFLLESLGLSNCDDVLPIYIGDDRTDEDAFKVLREGNRGYGILVSS 352 (384)
T ss_pred CCHHHHHHHHHHhcCCCcccceeEEEECCCchHHHHHHhhhccCCceEEEEec
Confidence 34577999999999988653 3899999999999996 466654443
No 191
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=97.25 E-value=0.0017 Score=60.23 Aligned_cols=85 Identities=16% Similarity=0.210 Sum_probs=65.7
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcE
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDC 258 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~ 258 (298)
.+.|++.+.++.|++.|++++++|+........+.+++ |+ + +.-.|+-...+.+++.-....+
T Consensus 347 ~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~l-gi--~--------------~~~~p~~K~~~v~~l~~~g~~v 409 (499)
T TIGR01494 347 PLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKEL-GI--F--------------ARVTPEEKAALVEALQKKGRVV 409 (499)
T ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-Cc--e--------------eccCHHHHHHHHHHHHHCCCEE
Confidence 68899999999999999999999999999888888887 65 1 1123444444444443233679
Q ss_pred EEEecChhhHHHHHHcCCeEEE
Q 022348 259 LVVEDSVIGLQAATRAGMACVI 280 (298)
Q Consensus 259 ~~vgD~~~Di~~a~~aG~~~v~ 280 (298)
.||||+.||..+.+.++....+
T Consensus 410 ~~vGDg~nD~~al~~Advgia~ 431 (499)
T TIGR01494 410 AMTGDGVNDAPALKKADVGIAM 431 (499)
T ss_pred EEECCChhhHHHHHhCCCcccc
Confidence 9999999999999999877444
No 192
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=97.23 E-value=0.0083 Score=51.24 Aligned_cols=102 Identities=19% Similarity=0.220 Sum_probs=72.3
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCC-----CCCCCH-----------
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVK-----QKKPDP----------- 241 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~-----~~KP~~----------- 241 (298)
+.-.|....+++.|+++|.++.++||+....+..-...+-|-+.-.-||.|+.-.+-+ ..+|-.
T Consensus 239 i~r~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~~sl~w 318 (510)
T KOG2470|consen 239 IERNPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVGDDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKRGSLLW 318 (510)
T ss_pred hhccHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeCccHHhhhheeEEecCCCcccccccCcchhhcccccchhh
Confidence 3456788999999999999999999999998887666654444322388776532211 111110
Q ss_pred --------------HHHHHHHHHhCCCCCcEEEEecCh-hhHHHHH-HcCCeEE
Q 022348 242 --------------SIYVTAAKRLGISEKDCLVVEDSV-IGLQAAT-RAGMACV 279 (298)
Q Consensus 242 --------------~~~~~~~~~lgi~~~~~~~vgD~~-~Di~~a~-~aG~~~v 279 (298)
......++--|....+++++||.. +|+.... +.||.+-
T Consensus 319 dkv~klekgkiYy~G~l~~flelt~WrG~~VlYFGDHlySDLad~tlkhgWRTg 372 (510)
T KOG2470|consen 319 DKVDKLEKGKIYYQGNLKSFLELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTG 372 (510)
T ss_pred hhhhhcccCceeeeccHHHHHHHhccCCCeeEEecCcchhhhhhhHhhcccccc
Confidence 013444555688888999999999 6999988 8999975
No 193
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.21 E-value=0.0034 Score=55.88 Aligned_cols=101 Identities=17% Similarity=0.185 Sum_probs=79.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCC----CCCCCCHHHHHHHHHHhCCC
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDV----KQKKPDPSIYVTAAKRLGIS 254 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~----~~~KP~~~~~~~~~~~lgi~ 254 (298)
.+|....+.+..|+++|+-++|+|-++...+.+.++.+ .|.++.-++. -.+.|+.+-++.++++||+-
T Consensus 255 ~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~kh--------p~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg 326 (574)
T COG3882 255 EAFKTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRKH--------PDMILKEEDFAVFQINWDPKAENIRKIAKKLNLG 326 (574)
T ss_pred hhHHHHHHHHHHHHhccEEEEEecCCchhhHHHHHhhC--------CCeEeeHhhhhhheecCCcchhhHHHHHHHhCCC
Confidence 35566788899999999999999999999899999887 2333333322 25789999999999999999
Q ss_pred CCcEEEEecChhhHHHHHHcCCeEEEEcCCCchh
Q 022348 255 EKDCLVVEDSVIGLQAATRAGMACVITYTSSTAE 288 (298)
Q Consensus 255 ~~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~ 288 (298)
.+..+|++|++...+-.+.-+- ..+++-+..+.
T Consensus 327 ~dSmvFiDD~p~ErE~vk~~~~-v~Vi~~~~Dps 359 (574)
T COG3882 327 LDSMVFIDDNPAERELVKRELP-VSVIEFPEDPS 359 (574)
T ss_pred ccceEEecCCHHHHHHHHhcCc-eeeccCCCCHH
Confidence 9999999999999999888876 33444444443
No 194
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=97.18 E-value=0.0023 Score=51.17 Aligned_cols=95 Identities=16% Similarity=0.160 Sum_probs=63.1
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCc--ceEEeCC--------CCC--CCCCCHHHHHH
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGL--DCFLAGD--------DVK--QKKPDPSIYVT 246 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~f--d~v~~~~--------~~~--~~KP~~~~~~~ 246 (298)
..+|++.++|+.+-+. +.++|-|.+....+..++..+ ++.....+ ..+...+ ..+ ..|+ +..
T Consensus 45 ~kRP~l~eFL~~~~~~-feIvVwTAa~~~ya~~~l~~l-~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKd----L~~ 118 (195)
T TIGR02245 45 LMRPYLHEFLTSAYED-YDIVIWSATSMKWIEIKMTEL-GVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKP----LGV 118 (195)
T ss_pred EeCCCHHHHHHHHHhC-CEEEEEecCCHHHHHHHHHHh-cccCCccceEEEEeccccceeeEeeccCcEEEee----cHH
Confidence 4789999999999995 999999999999999999887 54321101 1122111 111 1233 223
Q ss_pred HHHHhC--CCCCcEEEEecChhhHHHHHHcCCeEE
Q 022348 247 AAKRLG--ISEKDCLVVEDSVIGLQAATRAGMACV 279 (298)
Q Consensus 247 ~~~~lg--i~~~~~~~vgD~~~Di~~a~~aG~~~v 279 (298)
+.+++| .+.+++++|+|++....+=-..|+..-
T Consensus 119 lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i~I~ 153 (195)
T TIGR02245 119 IWALLPEFYSMKNTIMFDDLRRNFLMNPQNGLKIR 153 (195)
T ss_pred hhhhcccCCCcccEEEEeCCHHHHhcCCCCccccC
Confidence 333554 377999999999987776666676643
No 195
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=97.18 E-value=0.0014 Score=58.81 Aligned_cols=100 Identities=12% Similarity=0.215 Sum_probs=79.7
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEE
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCL 259 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~ 259 (298)
+-||+.|-+.+||+-|++...+|+.++.....+..+. |+++| +..++|. -...+.++..-.-.=+.
T Consensus 448 vK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EA-GVDdf-----------iAeatPE--dK~~~I~~eQ~~grlVA 513 (681)
T COG2216 448 VKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEA-GVDDF-----------IAEATPE--DKLALIRQEQAEGRLVA 513 (681)
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHh-Cchhh-----------hhcCChH--HHHHHHHHHHhcCcEEE
Confidence 5689999999999999999999999999999999888 98876 1235654 33334444444556689
Q ss_pred EEecChhhHHHHHHcCCeEEEEcCCCchhHhhhc
Q 022348 260 VVEDSVIGLQAATRAGMACVITYTSSTAEQVRII 293 (298)
Q Consensus 260 ~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~~~~~ 293 (298)
|.||+.||..+..+|.....+..|...+++-..+
T Consensus 514 MtGDGTNDAPALAqAdVg~AMNsGTqAAkEAaNM 547 (681)
T COG2216 514 MTGDGTNDAPALAQADVGVAMNSGTQAAKEAANM 547 (681)
T ss_pred EcCCCCCcchhhhhcchhhhhccccHHHHHhhcc
Confidence 9999999999999999998888887777765544
No 196
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=97.13 E-value=0.002 Score=65.02 Aligned_cols=41 Identities=17% Similarity=0.124 Sum_probs=36.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~ 220 (298)
++.||+.+.++.|++.|++++++|+.....+..+.... ++-
T Consensus 631 ~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~-~ii 671 (1057)
T TIGR01652 631 KLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSC-RLL 671 (1057)
T ss_pred hhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHh-CCC
Confidence 58899999999999999999999999988888887776 553
No 197
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.04 E-value=0.047 Score=44.00 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=32.8
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc
Q 022348 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~ 220 (298)
..++-||+.+.++.|++. ..-+|+|.+-.++++.....+ |+.
T Consensus 81 sa~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~i-g~P 122 (315)
T COG4030 81 SAKLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMI-GVP 122 (315)
T ss_pred hcccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhc-CCC
Confidence 457999999999999987 556777777777777777666 663
No 198
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=96.94 E-value=0.0088 Score=51.02 Aligned_cols=88 Identities=16% Similarity=0.174 Sum_probs=58.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHH---HHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCC
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVIL---CLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISE 255 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~---~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~ 255 (298)
.++||+.++|++|+++|++++++||+....... .++.+ |+..- .+.++++ .......+++.+...
T Consensus 18 ~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~-G~~~~--~~~i~ts---------~~~~~~~l~~~~~~~ 85 (279)
T TIGR01452 18 RVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARL-GFNGL--AEQLFSS---------ALCAARLLRQPPDAP 85 (279)
T ss_pred eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHc-CCCCC--hhhEecH---------HHHHHHHHHhhCcCC
Confidence 488999999999999999999999976443333 44444 55432 3444433 234445555544445
Q ss_pred CcEEEEecChhhHHHHHHcCCeEE
Q 022348 256 KDCLVVEDSVIGLQAATRAGMACV 279 (298)
Q Consensus 256 ~~~~~vgD~~~Di~~a~~aG~~~v 279 (298)
..++++|+.. ..+.++..|+..+
T Consensus 86 ~~v~~iG~~~-~~~~l~~~g~~~~ 108 (279)
T TIGR01452 86 KAVYVIGEEG-LRAELDAAGIRLA 108 (279)
T ss_pred CEEEEEcCHH-HHHHHHHCCCEEe
Confidence 6799999853 3455677787743
No 199
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=96.82 E-value=0.0041 Score=60.90 Aligned_cols=39 Identities=8% Similarity=-0.077 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHH---HhCCCCCcEEEEecChhhHHHHHHcC
Q 022348 237 KKPDPSIYVTAAK---RLGISEKDCLVVEDSVIGLQAATRAG 275 (298)
Q Consensus 237 ~KP~~~~~~~~~~---~lgi~~~~~~~vgD~~~Di~~a~~aG 275 (298)
+--|..+.+.+++ .+|+.++.+++|||+.||..|.+.++
T Consensus 760 gvnKG~Al~~Ll~~~~~~g~~~d~vl~~GDD~nDedMF~~~~ 801 (854)
T PLN02205 760 GVSKGLVAKRLLSIMQERGMLPDFVLCIGDDRSDEDMFEVIT 801 (854)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEEcCCccHHHHHHHhh
Confidence 3445677888864 46999999999999999999999876
No 200
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.73 E-value=0.002 Score=51.42 Aligned_cols=23 Identities=13% Similarity=-0.000 Sum_probs=19.1
Q ss_pred cEEEEecChhhHHHHHHcCCeEE
Q 022348 257 DCLVVEDSVIGLQAATRAGMACV 279 (298)
Q Consensus 257 ~~~~vgD~~~Di~~a~~aG~~~v 279 (298)
-++-+||++||+.+.......++
T Consensus 211 ~t~~~GDg~nD~Pl~ev~d~Afi 233 (274)
T COG3769 211 TTLGLGDGPNDAPLLEVMDYAFI 233 (274)
T ss_pred EEEecCCCCCcccHHHhhhhhee
Confidence 48999999999999987766544
No 201
>PLN03190 aminophospholipid translocase; Provisional
Probab=96.62 E-value=0.0059 Score=61.90 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=31.9
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHH
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLEN 215 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~ 215 (298)
++.+|+.+.++.|++.|++++++|+.....+..+...
T Consensus 726 ~lr~~v~~~I~~l~~agi~v~mlTGD~~~tAi~IA~s 762 (1178)
T PLN03190 726 KLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIGYS 762 (1178)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHH
Confidence 5899999999999999999999999887766666543
No 202
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=96.59 E-value=0.032 Score=48.50 Aligned_cols=46 Identities=17% Similarity=0.087 Sum_probs=32.6
Q ss_pred HHHHHHHHHHh----CCCCCcEEEEecCh-----hhHHHHHHcCCeEEEEcCCCchh
Q 022348 241 PSIYVTAAKRL----GISEKDCLVVEDSV-----IGLQAATRAGMACVITYTSSTAE 288 (298)
Q Consensus 241 ~~~~~~~~~~l----gi~~~~~~~vgD~~-----~Di~~a~~aG~~~v~~~~~~~~~ 288 (298)
..+...+.+-+ ++.+++|+||||-. ||.+ |+.+|. |+|+.+|.+-.
T Consensus 351 s~GV~~lQ~y~~~~~~i~~~~tLHVGDQF~s~GaNDfk-aR~a~~-t~WIasP~ETv 405 (408)
T PF06437_consen 351 SLGVRALQKYFDPEGGIKPSETLHVGDQFLSAGANDFK-ARLACT-TAWIASPQETV 405 (408)
T ss_pred HHhHHHHHHHHHhccCCCccceeeehhhhhccCCcchh-hhhhce-eeEecCHHHHh
Confidence 45667677777 89999999999965 5654 455554 46888775443
No 203
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=96.56 E-value=0.0089 Score=59.53 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=28.8
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHH
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCL 213 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l 213 (298)
++..||.+.++.|++.|+|++++|+...+.+..+.
T Consensus 651 kLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNIg 685 (1151)
T KOG0206|consen 651 KLQDGVPETIAKLAQAGIKIWVLTGDKQETAINIG 685 (1151)
T ss_pred hhccCchHHHHHHHHcCCEEEEEcCcHHHHHHHHH
Confidence 58899999999999999999999987555444433
No 204
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=96.45 E-value=0.013 Score=50.79 Aligned_cols=95 Identities=22% Similarity=0.246 Sum_probs=64.0
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCC------------hhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHH
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAAT------------KSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVT 246 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~------------~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~ 246 (298)
.++|.+..=|..|.+.|+.++|.||.. ..-+++++..+ ++. |........-...||...+++.
T Consensus 104 ~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~anl-~vP----i~~~~A~~~~~yRKP~tGMwe~ 178 (422)
T KOG2134|consen 104 ILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIVANL-GVP----IQLLAAIIKGKYRKPSTGMWEF 178 (422)
T ss_pred eeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHHHhc-CCc----eEEeeeccCCcccCcchhHHHH
Confidence 366777778888899999999999853 22234445443 443 3333333334588999999999
Q ss_pred HHHHhC----CCCCcEEEEecCh---------------hhHHHHHHcCCeE
Q 022348 247 AAKRLG----ISEKDCLVVEDSV---------------IGLQAATRAGMAC 278 (298)
Q Consensus 247 ~~~~lg----i~~~~~~~vgD~~---------------~Di~~a~~aG~~~ 278 (298)
..+.++ |....++||||-. .|+.-|.++|+..
T Consensus 179 ~~~~~nd~~~Isek~s~fvgdaagr~~~~~~~kkd~S~~D~~FAaN~gvkF 229 (422)
T KOG2134|consen 179 LKRLENDSVEISEKASIFVGDAAGRPLDALRRKKDHSSADRKFAANAGVKF 229 (422)
T ss_pred HHHHhhccceeeechhhhhhhhccCccccccCcccccHHHHHHHHhcCCcc
Confidence 987653 3345667888732 4788899988775
No 205
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=96.38 E-value=0.0031 Score=48.88 Aligned_cols=94 Identities=21% Similarity=0.306 Sum_probs=62.3
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCc
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKD 257 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~ 257 (298)
+.++||+.++|+.+.+. +.++|.|.+....+..+++.+..-..+ |+.++..+.....+- .+.+-++.+|.+.++
T Consensus 35 v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~ldp~~~~--~~~~~~r~~~~~~~~---~~~KdL~~l~~~~~~ 108 (159)
T PF03031_consen 35 VKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDALDPNGKL--FSRRLYRDDCTFDKG---SYIKDLSKLGRDLDN 108 (159)
T ss_dssp EEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHHTTTTSS--EEEEEEGGGSEEETT---EEE--GGGSSS-GGG
T ss_pred EeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhhhhhccc--ccccccccccccccc---ccccchHHHhhcccc
Confidence 56899999999999776 999999999999999999998332444 777776654321111 011356667878899
Q ss_pred EEEEecChhhHHHHHHcCCe
Q 022348 258 CLVVEDSVIGLQAATRAGMA 277 (298)
Q Consensus 258 ~~~vgD~~~Di~~a~~aG~~ 277 (298)
+++|+|++.-...-...|+.
T Consensus 109 vvivDD~~~~~~~~~~N~i~ 128 (159)
T PF03031_consen 109 VVIVDDSPRKWALQPDNGIP 128 (159)
T ss_dssp EEEEES-GGGGTTSGGGEEE
T ss_pred EEEEeCCHHHeeccCCceEE
Confidence 99999999755443444544
No 206
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.0064 Score=49.60 Aligned_cols=98 Identities=12% Similarity=0.123 Sum_probs=62.6
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcc-eEEeCCCCC----CCCCCH-------HHH
Q 022348 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLD-CFLAGDDVK----QKKPDP-------SIY 244 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd-~v~~~~~~~----~~KP~~-------~~~ 244 (298)
.+.+..|+.+++..|+++++++.|.|.+-...++..+.+.+++.....|- ....-++.+ ..+|-- ...
T Consensus 136 ~i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~pn~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v~ 215 (298)
T KOG3128|consen 136 NIALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHPNVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSVL 215 (298)
T ss_pred hHHHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCccHHhhhhhhhhcccchhhhhhHHHHHHHccchHHH
Confidence 34577899999999999999999999999988888888875655421111 111111111 111111 122
Q ss_pred HHHHHHhC--CCCCcEEEEecChhhHHHHHHc
Q 022348 245 VTAAKRLG--ISEKDCLVVEDSVIGLQAATRA 274 (298)
Q Consensus 245 ~~~~~~lg--i~~~~~~~vgD~~~Di~~a~~a 274 (298)
+...+.+. -...++++.||+..|+.|+..+
T Consensus 216 ~~~s~yf~~~~~~~nVillGdsigdl~ma~gv 247 (298)
T KOG3128|consen 216 QNESEYFHQLAGRVNVILLGDSIGDLHMADGV 247 (298)
T ss_pred HhhhHHHhhccCCceEEEeccccccchhhcCC
Confidence 22233332 2356899999999999998765
No 207
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.33 E-value=0.032 Score=41.95 Aligned_cols=95 Identities=24% Similarity=0.305 Sum_probs=57.2
Q ss_pred CChhHHHHHHHHHHC-C-CeEEEEeCCChh-------hHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHH
Q 022348 180 PRPGVLRLMDEAKAA-G-KKVAVCSAATKS-------SVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKR 250 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~-g-~~i~i~S~~~~~-------~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~ 250 (298)
+.|....-++++|.. | ..++++||.-.. ...+.++.-.|+.-+ -..+-+|.+-....+.
T Consensus 62 Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpVl------------RHs~kKP~ct~E~~~y 129 (190)
T KOG2961|consen 62 IWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPVL------------RHSVKKPACTAEEVEY 129 (190)
T ss_pred cCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCceE------------eecccCCCccHHHHHH
Confidence 445555555555543 2 678899886321 122333333344322 1122233344444443
Q ss_pred h-C----CCCCcEEEEecCh-hhHHHHHHcCCeEEEEcCCCc
Q 022348 251 L-G----ISEKDCLVVEDSV-IGLQAATRAGMACVITYTSST 286 (298)
Q Consensus 251 l-g----i~~~~~~~vgD~~-~Di~~a~~aG~~~v~~~~~~~ 286 (298)
+ | ..+++++||||.. .|+.+|...|..+||+..+.-
T Consensus 130 ~~~Nshv~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~gv~ 171 (190)
T KOG2961|consen 130 HFGNSHVCTSSELIMVGDRLFTDIVYANRMGSLGVWTEPGVR 171 (190)
T ss_pred HhCCcccCChhHeEEEccchhhhHhhhhhccceeEEeccccc
Confidence 3 4 4689999999999 699999999999998876543
No 208
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=96.28 E-value=0.013 Score=48.39 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=58.9
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcce---EEeCCCCC----CCCCCH
Q 022348 169 YQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDC---FLAGDDVK----QKKPDP 241 (298)
Q Consensus 169 ~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~---v~~~~~~~----~~KP~~ 241 (298)
..+.+....+.+++|+.++++.|.++++++.|+|.+-...+...+++. +... ..+.. ...-++.+ ..-|--
T Consensus 80 i~~~V~~s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~-~~~~-~Nv~VvSN~M~Fd~~g~l~gF~~~lI 157 (246)
T PF05822_consen 80 IEEAVKESDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQA-GVFH-PNVKVVSNFMDFDEDGVLVGFKGPLI 157 (246)
T ss_dssp HHHHHHCS---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHT-T--B-TTEEEEEE-EEE-TTSBEEEE-SS--
T ss_pred HHHHHHhcchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHc-CCCC-CCeEEEeeeEEECCcceEeecCCCce
Confidence 444445567789999999999999999999999999999999999997 5432 11111 11111111 111111
Q ss_pred HHHHHH---------HHHhCCCCCcEEEEecChhhHHHHHHc-CCeEE
Q 022348 242 SIYVTA---------AKRLGISEKDCLVVEDSVIGLQAATRA-GMACV 279 (298)
Q Consensus 242 ~~~~~~---------~~~lgi~~~~~~~vgD~~~Di~~a~~a-G~~~v 279 (298)
..|.+- .+++. ...+++.+||+..|+.|+..+ ....+
T Consensus 158 H~~NKn~~~l~~~~~~~~~~-~R~NvlLlGDslgD~~Ma~G~~~~~~~ 204 (246)
T PF05822_consen 158 HTFNKNESALEDSPYFKQLK-KRTNVLLLGDSLGDLHMADGVPDEENV 204 (246)
T ss_dssp -TT-HHHHHHTTHHHHHCTT-T--EEEEEESSSGGGGTTTT-S--SEE
T ss_pred EEeeCCcccccCchHHHHhc-cCCcEEEecCccCChHhhcCCCccccE
Confidence 111111 11221 357899999999999998776 44443
No 209
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=96.17 E-value=0.037 Score=50.29 Aligned_cols=91 Identities=11% Similarity=-0.061 Sum_probs=51.5
Q ss_pred HHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcce------EEeCCCCCCCCCCHHH-HHHHHHHhCCCCCcEE
Q 022348 187 LMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDC------FLAGDDVKQKKPDPSI-YVTAAKRLGISEKDCL 259 (298)
Q Consensus 187 ~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~------v~~~~~~~~~KP~~~~-~~~~~~~lgi~~~~~~ 259 (298)
.++..+..| +++|+|.....+++..++.++|.+..-+-+. .++|--. ++...+. ...+.+.+|- ....+
T Consensus 101 ~~~~~~~~g-~~vVVTAsPrvmVEpFake~LG~D~VvGTEL~v~~~G~~TG~~~--G~n~~ek~~~rl~~~~g~-~~~~v 176 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMPRVMVERFAKEHLRADEVIGSELVVNRFGFATGFIR--GTDVDQSVANRVANLFVD-ERPQL 176 (498)
T ss_pred HHHHHHcCC-eEEEEeCCHHHHHHHHHHHhcCCceEEeeeEEEeeccEEEEEEe--cCccHHHHHHHHHHHhCc-cCcee
Confidence 455667788 9999999999999999999546653311111 1111111 2222333 3344445663 23467
Q ss_pred EEecChhhHHHHHHcCCeEEEEcC
Q 022348 260 VVEDSVIGLQAATRAGMACVITYT 283 (298)
Q Consensus 260 ~vgD~~~Di~~a~~aG~~~v~~~~ 283 (298)
-+||+..|-.-..- ++-+++..
T Consensus 177 g~~~~~~~~~f~~~--ck~~~~~~ 198 (498)
T PLN02499 177 GLGRISASSSFLSL--CKEQIHPP 198 (498)
T ss_pred cccCCcccchhhhh--CceEEecC
Confidence 78887766555444 33444443
No 210
>PRK10444 UMP phosphatase; Provisional
Probab=96.07 E-value=0.05 Score=45.52 Aligned_cols=102 Identities=12% Similarity=0.163 Sum_probs=60.2
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHh--CCccccCcceEEeCCCC--------CCCC---CCHHHHH
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLI--GMERFEGLDCFLAGDDV--------KQKK---PDPSIYV 245 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~--~l~~~~~fd~v~~~~~~--------~~~K---P~~~~~~ 245 (298)
.++||+.++++.|+++|+++.++||+.........+++. |+.- ..+.++++... +..+ .-...+.
T Consensus 17 ~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~--~~~~i~ts~~~~~~~L~~~~~~~v~~~g~~~l~ 94 (248)
T PRK10444 17 VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDV--PDSVFYTSAMATADFLRRQEGKKAYVIGEGALI 94 (248)
T ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCC--CHhhEecHHHHHHHHHHhCCCCEEEEEcCHHHH
Confidence 578999999999999999999999998766555555541 4432 13556655210 0000 0112334
Q ss_pred HHHHHhCCC----CCcEEEEecChh-hHHHHH------HcCCeEEEEc
Q 022348 246 TAAKRLGIS----EKDCLVVEDSVI-GLQAAT------RAGMACVITY 282 (298)
Q Consensus 246 ~~~~~lgi~----~~~~~~vgD~~~-Di~~a~------~aG~~~v~~~ 282 (298)
..+++.|+. ..++++||...+ +..... +.|...+..+
T Consensus 95 ~~l~~~g~~~~~~~~~~Vvvg~~~~~~~~~l~~a~~~l~~g~~~i~~n 142 (248)
T PRK10444 95 HELYKAGFTITDINPDFVIVGETRSYNWDMMHKAAYFVANGARFIATN 142 (248)
T ss_pred HHHHHCcCEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEEEEC
Confidence 444555553 236777886653 433322 3377766544
No 211
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=95.83 E-value=0.026 Score=41.77 Aligned_cols=87 Identities=16% Similarity=0.140 Sum_probs=52.5
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCC--ChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCC
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAA--TKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISE 255 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~--~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~ 255 (298)
+.+.|++.+.+++|-+. +.++|+|.. -+.......+++..--+|.....++.+.. | |+-.
T Consensus 67 L~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCgn----K-------------nivk 128 (180)
T COG4502 67 LGVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCGN----K-------------NIVK 128 (180)
T ss_pred cCccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEecC----C-------------CeEE
Confidence 37889999999999998 899999987 34445555555533323322233332221 2 2211
Q ss_pred CcEEEEecChhhHHHHHHcCCeEEEEcCCCc
Q 022348 256 KDCLVVEDSVIGLQAATRAGMACVITYTSST 286 (298)
Q Consensus 256 ~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~ 286 (298)
. =++|+|++.+++..+ |++ |+....++
T Consensus 129 a-DilIDDnp~nLE~F~--G~k-IlFdA~HN 155 (180)
T COG4502 129 A-DILIDDNPLNLENFK--GNK-ILFDAHHN 155 (180)
T ss_pred e-eEEecCCchhhhhcc--Cce-EEEecccc
Confidence 1 278999998888654 454 44444444
No 212
>PLN02151 trehalose-phosphatase
Probab=95.75 E-value=0.082 Score=46.28 Aligned_cols=36 Identities=11% Similarity=-0.045 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHhCCCCC---cEEEEecChhhHHHHHHc
Q 022348 239 PDPSIYVTAAKRLGISEK---DCLVVEDSVIGLQAATRA 274 (298)
Q Consensus 239 P~~~~~~~~~~~lgi~~~---~~~~vgD~~~Di~~a~~a 274 (298)
-+....+.++++++..-. -.+|+||...|-.+.+.+
T Consensus 269 dKG~Av~~Ll~~~~~~~~~~~~pvyiGDD~TDEDaF~~L 307 (354)
T PLN02151 269 DKGKALEFLLESLGYANCTDVFPIYIGDDRTDEDAFKIL 307 (354)
T ss_pred CHHHHHHHHHHhcccccCCCCeEEEEcCCCcHHHHHHHH
Confidence 356788999999876532 279999999988776654
No 213
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=95.49 E-value=0.16 Score=42.54 Aligned_cols=101 Identities=20% Similarity=0.179 Sum_probs=60.3
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCC---hhhHHHHHHHHhCCccccCcceEEeCCCC-----CCCCCC-------HHH
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAAT---KSSVILCLENLIGMERFEGLDCFLAGDDV-----KQKKPD-------PSI 243 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~---~~~~~~~l~~~~~l~~~~~fd~v~~~~~~-----~~~KP~-------~~~ 243 (298)
.+.|++.++|++|+++|++++++||+. .......++.+ |+... .|.++++... ...++. ...
T Consensus 17 ~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~-g~~~~--~~~iit~~~~~~~~l~~~~~~~~v~~lg~~~ 93 (249)
T TIGR01457 17 ERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASF-DIPAT--LETVFTASMATADYMNDLKLEKTVYVIGEEG 93 (249)
T ss_pred eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHc-CCCCC--hhhEeeHHHHHHHHHHhcCCCCEEEEEcChh
Confidence 467899999999999999999999955 44555666666 76543 5667665320 011111 123
Q ss_pred HHHHHHHhCCC----CCcEEEEecCh-h---hHHHHH---HcCCeEEEEc
Q 022348 244 YVTAAKRLGIS----EKDCLVVEDSV-I---GLQAAT---RAGMACVITY 282 (298)
Q Consensus 244 ~~~~~~~lgi~----~~~~~~vgD~~-~---Di~~a~---~aG~~~v~~~ 282 (298)
+...++..|+. ..+.+++|... . ++..+. +.|...+..+
T Consensus 94 l~~~l~~~g~~~~~~~~~~Vvvg~~~~~~y~~l~~a~~~l~~g~~~i~tN 143 (249)
T TIGR01457 94 LKEAIKEAGYVEDKEKPDYVVVGLDRQIDYEKFATATLAIRKGAHFIGTN 143 (249)
T ss_pred HHHHHHHcCCEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHCCCeEEEEC
Confidence 55566666753 23567777532 2 332221 4587766544
No 214
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=95.39 E-value=0.056 Score=45.85 Aligned_cols=89 Identities=19% Similarity=0.174 Sum_probs=50.5
Q ss_pred CChhHHHHHHHHHHC----CCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCC
Q 022348 180 PRPGVLRLMDEAKAA----GKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISE 255 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~----g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~ 255 (298)
+.||+.+.++.|.++ .++...+||+....-....+++ ... .++-+..+.+-... ..|+.+. ++ .-
T Consensus 52 ~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~l---S~~--Lgv~Vs~dqviqSH---sP~r~l~-~~--~~ 120 (389)
T KOG1618|consen 52 PIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQEL---SAL--LGVEVSADQVIQSH---SPFRLLV-EY--HY 120 (389)
T ss_pred CCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHH---HHh--hCCccCHHHHHhhc---ChHHHHh-hh--hh
Confidence 555666677777666 6889999998754333333332 111 12222222222111 1344444 22 34
Q ss_pred CcEEEEecChhhHHHHHHcCCeEEE
Q 022348 256 KDCLVVEDSVIGLQAATRAGMACVI 280 (298)
Q Consensus 256 ~~~~~vgD~~~Di~~a~~aG~~~v~ 280 (298)
++++++|+. +-.+-|+..|++-|+
T Consensus 121 k~vLv~G~~-~vr~vAegyGFk~Vv 144 (389)
T KOG1618|consen 121 KRVLVVGQG-SVREVAEGYGFKNVV 144 (389)
T ss_pred ceEEEecCC-cHHHHhhccCcccee
Confidence 789999954 456678889999876
No 215
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=95.27 E-value=0.32 Score=45.81 Aligned_cols=27 Identities=15% Similarity=0.179 Sum_probs=23.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCC
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAAT 205 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~ 205 (298)
++..++...|+.||..|++++.+|+..
T Consensus 658 kLQ~dVk~tLElLRNAgikiWMLTGDK 684 (1051)
T KOG0210|consen 658 KLQDDVKPTLELLRNAGIKIWMLTGDK 684 (1051)
T ss_pred HHhhhhHhHHHHHhhcCcEEEEEcCcc
Confidence 577889999999999999999998753
No 216
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=94.98 E-value=0.29 Score=40.58 Aligned_cols=71 Identities=17% Similarity=0.175 Sum_probs=44.0
Q ss_pred CCeEEEEeCCChhhHHHHHHHH--hCCccccCcc-eEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHH
Q 022348 195 GKKVAVCSAATKSSVILCLENL--IGMERFEGLD-CFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAA 271 (298)
Q Consensus 195 g~~i~i~S~~~~~~~~~~l~~~--~~l~~~~~fd-~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a 271 (298)
-+++++||..+...-+..++.+ ||+. +| +.+-+ |..| .. +++.++-. +|++|....++.|
T Consensus 186 piRtalVTAR~apah~RvI~TLr~Wgv~----vDEafFLg---G~~K--~~----vL~~~~ph----IFFDDQ~~H~~~a 248 (264)
T PF06189_consen 186 PIRTALVTARSAPAHERVIRTLRSWGVR----VDEAFFLG---GLPK--GP----VLKAFRPH----IFFDDQDGHLESA 248 (264)
T ss_pred ceEEEEEEcCCCchhHHHHHHHHHcCCc----HhHHHHhC---CCch--hH----HHHhhCCC----EeecCchhhhhHh
Confidence 4889999987754444444433 2554 33 33222 2223 22 66666532 8999999999999
Q ss_pred HHcCCeEEEEcC
Q 022348 272 TRAGMACVITYT 283 (298)
Q Consensus 272 ~~aG~~~v~~~~ 283 (298)
. .++.++.|+-
T Consensus 249 ~-~~vps~hVP~ 259 (264)
T PF06189_consen 249 S-KVVPSGHVPY 259 (264)
T ss_pred h-cCCCEEeccC
Confidence 8 7777775543
No 217
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=94.96 E-value=0.37 Score=48.20 Aligned_cols=50 Identities=14% Similarity=0.003 Sum_probs=41.0
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCcE-EEEecChh-hHHHHHHcCCeEEEEcC
Q 022348 234 VKQKKPDPSIYVTAAKRLGISEKDC-LVVEDSVI-GLQAATRAGMACVITYT 283 (298)
Q Consensus 234 ~~~~KP~~~~~~~~~~~lgi~~~~~-~~vgD~~~-Di~~a~~aG~~~v~~~~ 283 (298)
++..-.+...++++..++|++.+++ +|+||+.| |++....--..+|++-|
T Consensus 951 lP~~ASKgqAlRyL~~rwgi~l~~v~VfaGdSGntD~e~Ll~G~~~tvi~~g 1002 (1050)
T TIGR02468 951 IPLLASRSQALRYLFVRWGIELANMAVFVGESGDTDYEGLLGGLHKTVILKG 1002 (1050)
T ss_pred eeCCCCHHHHHHHHHHHcCCChHHeEEEeccCCCCCHHHHhCCceeEEEEec
Confidence 4555667889999999999999999 55999999 99988655556777777
No 218
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=94.63 E-value=0.34 Score=40.15 Aligned_cols=86 Identities=17% Similarity=0.228 Sum_probs=52.1
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHH---HHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCC
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILC---LENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISE 255 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~---l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~ 255 (298)
.++|++.+.|..++++|+++.++||+........ +..+.++.- .++.++++. ......+++.+ ..
T Consensus 14 ~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~--~~~~iits~---------~~~~~~l~~~~-~~ 81 (236)
T TIGR01460 14 KPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDV--SPDQIITSG---------SVTKDLLRQRF-EG 81 (236)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCC--CHHHeeeHH---------HHHHHHHHHhC-CC
Confidence 4788999999999999999999998875444443 444224432 245555442 22233333322 22
Q ss_pred CcEEEEecChhhHHHHHHcCCe
Q 022348 256 KDCLVVEDSVIGLQAATRAGMA 277 (298)
Q Consensus 256 ~~~~~vgD~~~Di~~a~~aG~~ 277 (298)
+.++++|.. ...+.++..|+.
T Consensus 82 ~~v~v~G~~-~~~~~l~~~g~~ 102 (236)
T TIGR01460 82 EKVYVIGVG-ELRESLEGLGFR 102 (236)
T ss_pred CEEEEECCH-HHHHHHHHcCCc
Confidence 457888853 345555666653
No 219
>PLN03017 trehalose-phosphatase
Probab=94.44 E-value=0.091 Score=46.20 Aligned_cols=34 Identities=12% Similarity=-0.028 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhCCCC---CcEEEEecChhhHHHHHHc
Q 022348 241 PSIYVTAAKRLGISE---KDCLVVEDSVIGLQAATRA 274 (298)
Q Consensus 241 ~~~~~~~~~~lgi~~---~~~~~vgD~~~Di~~a~~a 274 (298)
....+.+++.+|... .-.+|+||...|-.+.+.+
T Consensus 285 G~Av~~LL~~l~~~~~~~~~pvyiGDD~TDEDaF~~L 321 (366)
T PLN03017 285 GKALEFLLESLGFGNTNNVFPVYIGDDRTDEDAFKML 321 (366)
T ss_pred HHHHHHHHHhcccccCCCceEEEeCCCCccHHHHHHH
Confidence 345666666666542 2479999999887776655
No 220
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=94.35 E-value=0.058 Score=45.34 Aligned_cols=43 Identities=9% Similarity=-0.040 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcC---CeEEEEc
Q 022348 240 DPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAG---MACVITY 282 (298)
Q Consensus 240 ~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG---~~~v~~~ 282 (298)
+...+..++++++....-+++.||...|=.+-+.+. -.+|.+.
T Consensus 183 KG~a~~~i~~~~~~~~~~~~~aGDD~TDE~~F~~v~~~~~~~v~v~ 228 (266)
T COG1877 183 KGAAIKYIMDELPFDGRFPIFAGDDLTDEDAFAAVNKLDSITVKVG 228 (266)
T ss_pred hHHHHHHHHhcCCCCCCcceecCCCCccHHHHHhhccCCCceEEec
Confidence 466777788877666556899999997766666554 4455333
No 221
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=94.22 E-value=0.074 Score=44.77 Aligned_cols=49 Identities=24% Similarity=0.336 Sum_probs=37.1
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhh---HHHHHHHHhCCccccCcceEEeC
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSS---VILCLENLIGMERFEGLDCFLAG 231 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~---~~~~l~~~~~l~~~~~fd~v~~~ 231 (298)
++||+.+++++|+++|++++++||+.... ....++.+ |++- ..+.++++
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~-g~~~--~~~~i~ts 73 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRL-GFDI--SEDEVFTP 73 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHc-CCCC--CHHHeEcH
Confidence 89999999999999999999999987664 44555555 6642 24555554
No 222
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=94.10 E-value=0.19 Score=48.38 Aligned_cols=106 Identities=17% Similarity=0.193 Sum_probs=70.9
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCC----------------CCCCCH-
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVK----------------QKKPDP- 241 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~----------------~~KP~~- 241 (298)
+.+||+.+.++.++..|+.+--+|+.+-..++.+..+. |+..-.+-..++.+.+.. -...+|
T Consensus 647 PvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~eC-GILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlARSSP~ 725 (1034)
T KOG0204|consen 647 PVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIAREC-GILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLARSSPN 725 (1034)
T ss_pred CCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHHHHc-ccccCCCccceecchhhhhcCHHHHHhhhhhheeeecCCCc
Confidence 47899999999999999999999999999999999998 776432211344443321 001111
Q ss_pred --HHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEE-EcCCCchh
Q 022348 242 --SIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVI-TYTSSTAE 288 (298)
Q Consensus 242 --~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~-~~~~~~~~ 288 (298)
..+-+.+++. .+-+.+-||+.||-.+.+.|.++..| +.|..-++
T Consensus 726 DK~lLVk~L~~~---g~VVAVTGDGTNDaPALkeADVGlAMGIaGTeVAK 772 (1034)
T KOG0204|consen 726 DKHLLVKGLIKQ---GEVVAVTGDGTNDAPALKEADVGLAMGIAGTEVAK 772 (1034)
T ss_pred hHHHHHHHHHhc---CcEEEEecCCCCCchhhhhcccchhccccchhhhh
Confidence 1222233322 24466779999999999999988774 44443333
No 223
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=92.45 E-value=0.5 Score=44.49 Aligned_cols=60 Identities=20% Similarity=0.212 Sum_probs=49.3
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCC
Q 022348 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKK 238 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~K 238 (298)
.++++|++.++|+++.+. +.+.|+|-+.+..+..+++.+-.-..|++ |.|++.++-+..|
T Consensus 199 ~vKlRP~~~efL~~~skl-femhVyTmg~R~YA~~i~~liDP~~~lF~-dRIisrde~~~~k 258 (635)
T KOG0323|consen 199 LVKLRPFVHEFLKEANKL-FEMHVYTMGTRDYALEIAKLIDPEGKYFG-DRIISRDESPFFK 258 (635)
T ss_pred EEEeCccHHHHHHHHHhh-ceeEEEeccchHHHHHHHHHhCCCCcccc-ceEEEecCCCccc
Confidence 357999999999999988 99999999999999999988745556644 7888888755444
No 224
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=92.16 E-value=0.19 Score=48.17 Aligned_cols=40 Identities=10% Similarity=0.256 Sum_probs=34.2
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCC
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGM 219 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l 219 (298)
++.|+..+.+++|.+.++++..+|+.+...+-+..+++ ++
T Consensus 675 PlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVak~v-~i 714 (1160)
T KOG0209|consen 675 PLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVAKEV-GI 714 (1160)
T ss_pred CCCccHHHHHHHHhccCceEEEEeCCCccchheehhee-ee
Confidence 57889999999999999999999999887777766665 44
No 225
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=91.50 E-value=2.8 Score=35.66 Aligned_cols=95 Identities=16% Similarity=0.195 Sum_probs=57.7
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHh--CCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCC
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLI--GMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEK 256 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~--~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~ 256 (298)
.+.||+.+.+..|++.|..+.++||+.....+...++.. |..+... +.++ -|.-.+..++ ++..-..+
T Consensus 38 ~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~v~e-~~i~--------ssa~~~a~yl-k~~~~~~k 107 (306)
T KOG2882|consen 38 KPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNSVKE-ENIF--------SSAYAIADYL-KKRKPFGK 107 (306)
T ss_pred CCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccccCc-cccc--------ChHHHHHHHH-HHhCcCCC
Confidence 589999999999999999999999998776665555431 4443211 1111 2223333333 23233446
Q ss_pred cEEEEecChhhHHHHHHcCCeEEEEcCC
Q 022348 257 DCLVVEDSVIGLQAATRAGMACVITYTS 284 (298)
Q Consensus 257 ~~~~vgD~~~Di~~a~~aG~~~v~~~~~ 284 (298)
.++++|-..- -+.++++|+.+......
T Consensus 108 ~Vyvig~~gi-~~eL~~aG~~~~g~~~~ 134 (306)
T KOG2882|consen 108 KVYVIGEEGI-REELDEAGFEYFGGGPD 134 (306)
T ss_pred eEEEecchhh-hHHHHHcCceeecCCCC
Confidence 7777774432 34566778776544433
No 226
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=91.39 E-value=0.54 Score=41.45 Aligned_cols=102 Identities=14% Similarity=0.115 Sum_probs=71.9
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCC---------------------------
Q 022348 181 RPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDD--------------------------- 233 (298)
Q Consensus 181 ~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~--------------------------- 233 (298)
.+....++..+++.|.++.++||.+-.........+.+.+...-||.++....
T Consensus 200 d~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~~ 279 (424)
T KOG2469|consen 200 DGTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGDNT 279 (424)
T ss_pred cCccccchHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEEEEEEeccCCccccccceeeeeccccccccccccC
Confidence 34455589999999999999999998888777777756332222676655420
Q ss_pred ---CCCCCCCHHHHHHHHHHhCCCCCcEEEEecChh-hHHH-HHHcCCeEEEEc
Q 022348 234 ---VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVI-GLQA-ATRAGMACVITY 282 (298)
Q Consensus 234 ---~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~-Di~~-a~~aG~~~v~~~ 282 (298)
...+++++.....++..+++...+++++||+.. |+.- -+.-|+.++++-
T Consensus 280 ~p~e~~~~ySggs~~~~~~~l~~~g~diLy~gdHi~~dvl~skk~~~wrt~lv~ 333 (424)
T KOG2469|consen 280 GPLEQGGVYSGGSLKTVETSMKVKGKDILYGGDHIWGDVLVSKKRRGWRTVLVA 333 (424)
T ss_pred CcchhcccCCcchHHHHHHHhcccccceeecccceeeeEEecceecceEEEEEe
Confidence 012334556677788888888899999999995 6654 456799987543
No 227
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=91.02 E-value=1.4 Score=32.31 Aligned_cols=84 Identities=14% Similarity=0.110 Sum_probs=57.1
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCChh-hHHHHHHHHhCCcccc-------CcceEEeCCCCCCCCCCHHHHHHHHH
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKS-SVILCLENLIGMERFE-------GLDCFLAGDDVKQKKPDPSIYVTAAK 249 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~-~~~~~l~~~~~l~~~~-------~fd~v~~~~~~~~~KP~~~~~~~~~~ 249 (298)
..+|+++...|..|++.|+.++++|++... .+...|+.+ .+.... .|+.+..++- .+...|..+-+
T Consensus 43 ~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~f-kvk~~Gvlkps~e~ft~~~~g~g-----sklghfke~~n 116 (144)
T KOG4549|consen 43 MIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETF-KVKQTGVLKPSLEEFTFEAVGDG-----SKLGHFKEFTN 116 (144)
T ss_pred eeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHh-ccCcccccchhhhcCceeeecCc-----ccchhHHHHhh
Confidence 468999999999999999999999998754 455566665 554321 1233332221 22345566667
Q ss_pred HhCCCCCcEEEEecChhh
Q 022348 250 RLGISEKDCLVVEDSVIG 267 (298)
Q Consensus 250 ~lgi~~~~~~~vgD~~~D 267 (298)
.-|+.-++..+++|-..+
T Consensus 117 ~s~~~~k~~~~fdDesrn 134 (144)
T KOG4549|consen 117 NSNSIEKNKQVFDDESRN 134 (144)
T ss_pred ccCcchhceeeecccccC
Confidence 778888888888887654
No 228
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=90.96 E-value=0.96 Score=39.43 Aligned_cols=86 Identities=15% Similarity=0.086 Sum_probs=57.0
Q ss_pred CCChhHHHHHHHHHHC----CCeEEEEeCCChhh---HHHHH-HHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHH
Q 022348 179 EPRPGVLRLMDEAKAA----GKKVAVCSAATKSS---VILCL-ENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKR 250 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~----g~~i~i~S~~~~~~---~~~~l-~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~ 250 (298)
.+.||+.++++.|+++ |+++.++||+.... ....+ +.+ |+.-- .+.++.+. .....++++
T Consensus 16 ~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~l-G~~~~--~~~i~~s~---------~~~~~ll~~ 83 (321)
T TIGR01456 16 KPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLL-GVDVS--PLQVIQSH---------SPYKSLVNK 83 (321)
T ss_pred cccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHc-CCCCC--HHHHHhhh---------HHHHHHHHH
Confidence 4689999999999998 99999999997332 22333 454 66421 33444331 133445555
Q ss_pred hCCCCCcEEEEecChhhHHHHHHcCCeEEE
Q 022348 251 LGISEKDCLVVEDSVIGLQAATRAGMACVI 280 (298)
Q Consensus 251 lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~ 280 (298)
++ ..+++||.+. -.+.++..|+..++
T Consensus 84 ~~---~~v~viG~~~-~~~~l~~~G~~~vv 109 (321)
T TIGR01456 84 YE---KRILAVGTGS-VRGVAEGYGFQNVV 109 (321)
T ss_pred cC---CceEEEeChH-HHHHHHHcCCcccc
Confidence 43 2689999765 57777899988654
No 229
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=90.55 E-value=0.61 Score=39.57 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=37.0
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCcc
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMER 221 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~ 221 (298)
.+.+++.++|+.|+++|++++++|+.....+...++.+ ++..
T Consensus 21 ~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l-~l~~ 62 (273)
T PRK00192 21 YSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKEL-GLED 62 (273)
T ss_pred cCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-CCCC
Confidence 35678899999999999999999999999899999888 7764
No 230
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=90.18 E-value=4.2 Score=33.26 Aligned_cols=90 Identities=21% Similarity=0.315 Sum_probs=58.1
Q ss_pred HHHHHHC-CCeEEEEeCCCh---hhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEec
Q 022348 188 MDEAKAA-GKKVAVCSAATK---SSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVED 263 (298)
Q Consensus 188 l~~L~~~-g~~i~i~S~~~~---~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD 263 (298)
|.+..++ ++.+-+++.+.. ..+....... +..|. +|.++..... ..-|-|..-+.+++.-|++ |++|||
T Consensus 23 lDErAdRedI~vrv~gsGaKm~pe~~~~~~~~~--~~~~~-pDf~i~isPN-~a~PGP~~ARE~l~~~~iP---~IvI~D 95 (277)
T PRK00994 23 LDERADREDIDVRVVGSGAKMGPEEVEEVVKKM--LEEWK-PDFVIVISPN-PAAPGPKKAREILKAAGIP---CIVIGD 95 (277)
T ss_pred HHhhhcccCceEEEeccCCCCCHHHHHHHHHHH--HHhhC-CCEEEEECCC-CCCCCchHHHHHHHhcCCC---EEEEcC
Confidence 3344444 788999988753 3333222222 12222 4654433322 2457777889999998984 899999
Q ss_pred Chh--hHHHHHHcCCeEEEEcCC
Q 022348 264 SVI--GLQAATRAGMACVITYTS 284 (298)
Q Consensus 264 ~~~--Di~~a~~aG~~~v~~~~~ 284 (298)
.+. +.+..+..|++.|++...
T Consensus 96 ~p~~K~~d~l~~~g~GYIivk~D 118 (277)
T PRK00994 96 APGKKVKDAMEEQGLGYIIVKAD 118 (277)
T ss_pred CCccchHHHHHhcCCcEEEEecC
Confidence 994 779999999999976643
No 231
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=90.01 E-value=8.3 Score=31.71 Aligned_cols=97 Identities=14% Similarity=0.164 Sum_probs=61.5
Q ss_pred CCCCChhHHHHHH---HHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCC--CCCCCHHHHHHHHHHh
Q 022348 177 TVEPRPGVLRLMD---EAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVK--QKKPDPSIYVTAAKRL 251 (298)
Q Consensus 177 ~~~~~pg~~~~l~---~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~--~~KP~~~~~~~~~~~l 251 (298)
...++|+..++++ .|-+.|+.+.-+++.+....+ .|+.. |-. -...-+..+| .+--++..++.++++.
T Consensus 102 ~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~ak-rL~d~-Gca-----avMPlgsPIGSg~Gi~n~~~l~~i~~~~ 174 (247)
T PF05690_consen 102 DKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAK-RLEDA-GCA-----AVMPLGSPIGSGRGIQNPYNLRIIIERA 174 (247)
T ss_dssp TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHH-HHHHT-T-S-----EBEEBSSSTTT---SSTHHHHHHHHHHG
T ss_pred CCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHH-HHHHC-CCC-----EEEecccccccCcCCCCHHHHHHHHHhc
Confidence 3467888888774 688899999999999988554 44444 432 1222333343 4456789999999999
Q ss_pred CCCCCcEEEEecCh---hhHHHHHHcCCeEEEEcCC
Q 022348 252 GISEKDCLVVEDSV---IGLQAATRAGMACVITYTS 284 (298)
Q Consensus 252 gi~~~~~~~vgD~~---~Di~~a~~aG~~~v~~~~~ 284 (298)
+++ +.|+=+. +|...|-+.|+..|++|+.
T Consensus 175 ~vP----vIvDAGiG~pSdaa~AMElG~daVLvNTA 206 (247)
T PF05690_consen 175 DVP----VIVDAGIGTPSDAAQAMELGADAVLVNTA 206 (247)
T ss_dssp SSS----BEEES---SHHHHHHHHHTT-SEEEESHH
T ss_pred CCc----EEEeCCCCCHHHHHHHHHcCCceeehhhH
Confidence 875 5666554 7999999999999988753
No 232
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=89.85 E-value=1.6 Score=40.90 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCCh---hhHHHHHHHHhCCccccCcce-EEeC-C--------CCCCCCCCH---HHHHH
Q 022348 183 GVLRLMDEAKAAGKKVAVCSAATK---SSVILCLENLIGMERFEGLDC-FLAG-D--------DVKQKKPDP---SIYVT 246 (298)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~S~~~~---~~~~~~l~~~~~l~~~~~fd~-v~~~-~--------~~~~~KP~~---~~~~~ 246 (298)
||.+|...++++|+++.-||.... ...+..|..+ .-+...-.|. |+.+ + |+-..||.. .++..
T Consensus 562 GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv-~QdG~~LPdGPViLSPd~lf~Al~REVI~RkPe~FKIAcL~D 640 (738)
T KOG2116|consen 562 GVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNV-EQDGKKLPDGPVILSPDSLFAALHREVIERKPEVFKIACLTD 640 (738)
T ss_pred hHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHH-hhcCccCCCCCEEeCCCcchHHHHHHHHHcCchhhhHHHHHH
Confidence 888999999999999999998643 3344455554 2222111221 2222 2 233456542 12222
Q ss_pred HHHHhCCCCCc--EEEEecChhhHHHHHHcCCeE
Q 022348 247 AAKRLGISEKD--CLVVEDSVIGLQAATRAGMAC 278 (298)
Q Consensus 247 ~~~~lgi~~~~--~~~vgD~~~Di~~a~~aG~~~ 278 (298)
+.+.+. +-.+ ..-||+..+|+-.=+++|++-
T Consensus 641 Ik~LF~-p~~nPFYAgFGNR~TDviSY~~VgVP~ 673 (738)
T KOG2116|consen 641 IKNLFP-PSGNPFYAGFGNRITDVISYRQVGVPL 673 (738)
T ss_pred HHHhcC-CCCCceeeecCCCcccceeeeeecCCc
Confidence 222233 1122 456889999999999999884
No 233
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=89.36 E-value=0.6 Score=41.53 Aligned_cols=96 Identities=18% Similarity=0.234 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCChhhHHH---HHHHHh--CCcccc-----CcceEEeC--CCCCCCCCCH--HHHHHHH
Q 022348 183 GVLRLMDEAKAAGKKVAVCSAATKSSVIL---CLENLI--GMERFE-----GLDCFLAG--DDVKQKKPDP--SIYVTAA 248 (298)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~S~~~~~~~~~---~l~~~~--~l~~~~-----~fd~v~~~--~~~~~~KP~~--~~~~~~~ 248 (298)
||..+...+-.+|+++.-+|......... .+.... |-.... ..|..+++ +++-..||.- -+|..-+
T Consensus 407 gVAkLYtdI~rNGYkI~YltsR~~Gqa~sTrsylrnieQngykLpdgpviLspd~t~aal~relIlrkpE~FKiayLndl 486 (580)
T COG5083 407 GVAKLYTDIDRNGYKIKYLTSRSYGQADSTRSYLRNIEQNGYKLPDGPVILSPDRTMAALYRELILRKPEVFKIAYLNDL 486 (580)
T ss_pred chhhhhhhhccCceEEEEEecccccchhhhhhHHHhhhhcCccCCCCCEeeccchhhhhhhhhhhhcChHHHHHHHHHHH
Confidence 45555556667888888888765333322 222110 111110 01222222 2233445432 1222223
Q ss_pred HHhCCCCCcEE-EEecChhhHHHHHHcCCeE
Q 022348 249 KRLGISEKDCL-VVEDSVIGLQAATRAGMAC 278 (298)
Q Consensus 249 ~~lgi~~~~~~-~vgD~~~Di~~a~~aG~~~ 278 (298)
+.+++.+.-.+ -+|+...|+..=+..|++.
T Consensus 487 ~slf~e~~PFyAGFGNriTDvisY~~vgIp~ 517 (580)
T COG5083 487 KSLFIEFDPFYAGFGNRITDVISYSNVGIPK 517 (580)
T ss_pred HHhhCcCChhhccccccchhheeeccccCCh
Confidence 45566654333 5899999999999998874
No 234
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=88.38 E-value=0.25 Score=38.14 Aligned_cols=15 Identities=33% Similarity=0.764 Sum_probs=12.4
Q ss_pred cEEEEecCCccccch
Q 022348 68 QALIFDCDGVIIESE 82 (298)
Q Consensus 68 k~viFD~DGTL~d~~ 82 (298)
|+++||+||||+...
T Consensus 1 k~LVlDLD~TLv~~~ 15 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSS 15 (159)
T ss_dssp EEEEEE-CTTTEEEE
T ss_pred CEEEEeCCCcEEEEe
Confidence 689999999999875
No 235
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=88.14 E-value=1.7 Score=36.65 Aligned_cols=41 Identities=27% Similarity=0.348 Sum_probs=36.2
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~ 220 (298)
.+.+...+.|++|+++|++++++|+.....+...++.+ ++.
T Consensus 20 ~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l-~~~ 60 (270)
T PRK10513 20 TISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKEL-HME 60 (270)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHh-CCC
Confidence 36677889999999999999999999999888888887 764
No 236
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=88.10 E-value=0.73 Score=37.81 Aligned_cols=46 Identities=30% Similarity=0.367 Sum_probs=38.5
Q ss_pred CCCH----HHHHHHHHHhCCCC--CcEEEEecCh-hhHHHHHHcCCeEEEEcCC
Q 022348 238 KPDP----SIYVTAAKRLGISE--KDCLVVEDSV-IGLQAATRAGMACVITYTS 284 (298)
Q Consensus 238 KP~~----~~~~~~~~~lgi~~--~~~~~vgD~~-~Di~~a~~aG~~~v~~~~~ 284 (298)
||+| +.|..-++.+|++| .++-||.|+. +--.+|.-.||. ||++|-
T Consensus 81 KPsP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGLGWE-VWldGM 133 (279)
T cd00733 81 KPSPDNIQELYLESLEALGINPKEHDIRFVEDNWESPTLGAWGLGWE-VWLDGM 133 (279)
T ss_pred CCCCccHHHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccE-EEECCe
Confidence 6666 57778899999997 5899999999 688999999999 577765
No 237
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=88.05 E-value=1.3 Score=36.05 Aligned_cols=41 Identities=12% Similarity=0.085 Sum_probs=36.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~ 220 (298)
.+.|+..+.|++|++.|++++++|+.....+...++.+ ++.
T Consensus 18 ~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l-~~~ 58 (215)
T TIGR01487 18 MISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLI-GTS 58 (215)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHh-CCC
Confidence 47778999999999999999999999999888888877 765
No 238
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=87.75 E-value=10 Score=31.58 Aligned_cols=98 Identities=14% Similarity=0.106 Sum_probs=68.7
Q ss_pred CCCCChhHHHHHH---HHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCC--CCCCCHHHHHHHHHHh
Q 022348 177 TVEPRPGVLRLMD---EAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVK--QKKPDPSIYVTAAKRL 251 (298)
Q Consensus 177 ~~~~~pg~~~~l~---~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~--~~KP~~~~~~~~~~~l 251 (298)
...++|+..++++ .|-+.|+.+.-+++.+....+ .|+.. |-.- ...-+..++ .+-.+|..++.+.++.
T Consensus 116 ~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~-rLed~-Gc~a-----VMPlgsPIGSg~Gl~n~~~l~~i~e~~ 188 (267)
T CHL00162 116 PKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAK-HLEDI-GCAT-----VMPLGSPIGSGQGLQNLLNLQIIIENA 188 (267)
T ss_pred CcccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHH-HHHHc-CCeE-----EeeccCcccCCCCCCCHHHHHHHHHcC
Confidence 3458888888875 577899999999999987554 44444 3321 112222333 4556788999999887
Q ss_pred CCCCCcEEEEecCh---hhHHHHHHcCCeEEEEcCCC
Q 022348 252 GISEKDCLVVEDSV---IGLQAATRAGMACVITYTSS 285 (298)
Q Consensus 252 gi~~~~~~~vgD~~---~Di~~a~~aG~~~v~~~~~~ 285 (298)
.++ +.+|=+. .|+..|-+.|...|++++..
T Consensus 189 ~vp----VivdAGIgt~sDa~~AmElGaDgVL~nSaI 221 (267)
T CHL00162 189 KIP----VIIDAGIGTPSEASQAMELGASGVLLNTAV 221 (267)
T ss_pred CCc----EEEeCCcCCHHHHHHHHHcCCCEEeeccee
Confidence 653 6777554 79999999999999877643
No 239
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=87.53 E-value=0.85 Score=37.72 Aligned_cols=46 Identities=30% Similarity=0.369 Sum_probs=38.4
Q ss_pred CCCH----HHHHHHHHHhCCCC--CcEEEEecCh-hhHHHHHHcCCeEEEEcCC
Q 022348 238 KPDP----SIYVTAAKRLGISE--KDCLVVEDSV-IGLQAATRAGMACVITYTS 284 (298)
Q Consensus 238 KP~~----~~~~~~~~~lgi~~--~~~~~vgD~~-~Di~~a~~aG~~~v~~~~~ 284 (298)
||+| +.|..-++.+|++| .++-||.|+. +--.+|.-.||. ||++|-
T Consensus 82 KPsP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWE-VWldGM 134 (293)
T TIGR00388 82 KPSPDNIQELYLDSLRALGIDPTEHDIRFVEDNWENPTLGAWGLGWE-VWLDGM 134 (293)
T ss_pred CCCCccHHHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccE-EEECCe
Confidence 6666 56777789999997 5899999999 688999999999 577764
No 240
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=87.46 E-value=0.83 Score=37.58 Aligned_cols=46 Identities=30% Similarity=0.357 Sum_probs=38.3
Q ss_pred CCCH----HHHHHHHHHhCCCC--CcEEEEecCh-hhHHHHHHcCCeEEEEcCC
Q 022348 238 KPDP----SIYVTAAKRLGISE--KDCLVVEDSV-IGLQAATRAGMACVITYTS 284 (298)
Q Consensus 238 KP~~----~~~~~~~~~lgi~~--~~~~~vgD~~-~Di~~a~~aG~~~v~~~~~ 284 (298)
||+| +.|..-++.+||+| .++-||.|+. +--.+|.-.||. ||++|-
T Consensus 85 KPsP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWE-VWldGM 137 (283)
T PRK09348 85 KPSPDNIQELYLGSLEALGIDPLEHDIRFVEDNWESPTLGAWGLGWE-VWLDGM 137 (283)
T ss_pred cCCCccHHHHHHHHHHHhCCCccccceeEeecCCCCCcccccccceE-EEECCe
Confidence 6666 56777889999997 5899999999 688999999999 577764
No 241
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=86.84 E-value=1.5 Score=35.69 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=34.8
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~ 220 (298)
..+...+.|+.|+++|++++++||+....+...++.+ ++.
T Consensus 17 ~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l-~~~ 56 (221)
T TIGR02463 17 DWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKAL-GLT 56 (221)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-CCC
Confidence 3344789999999999999999999999999999888 765
No 242
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=86.70 E-value=0.69 Score=36.71 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=19.7
Q ss_pred cEEEEecCCccccchhHHHHHHHHHHhh
Q 022348 68 QALIFDCDGVIIESEHLHRQAYNDAFSH 95 (298)
Q Consensus 68 k~viFD~DGTL~d~~~~~~~~~~~~~~~ 95 (298)
-+++||+||||..........+.+.+++
T Consensus 12 ~l~lfdvdgtLt~~r~~~~~e~~~~l~~ 39 (252)
T KOG3189|consen 12 TLCLFDVDGTLTPPRQKVTPEMLEFLQK 39 (252)
T ss_pred eEEEEecCCccccccccCCHHHHHHHHH
Confidence 4899999999998765444445555544
No 243
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=86.52 E-value=1.8 Score=35.62 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=35.3
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~ 220 (298)
..++..+.|++|+++|+++.++|+.....+...++++ ++.
T Consensus 16 ~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~l-g~~ 55 (225)
T TIGR02461 16 EPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREEL-GVE 55 (225)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHc-CCC
Confidence 4567899999999999999999999988888888888 764
No 244
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=86.40 E-value=1.6 Score=36.46 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=36.0
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~ 220 (298)
.+.+...+.|++|+++|++++++|+.....+...++.+ ++.
T Consensus 16 ~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~-~~~ 56 (256)
T TIGR00099 16 TISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKEL-GLD 56 (256)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc-CCC
Confidence 46678899999999999999999999998888888887 665
No 245
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=86.32 E-value=1.8 Score=35.46 Aligned_cols=42 Identities=10% Similarity=0.071 Sum_probs=36.0
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCcc
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMER 221 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~ 221 (298)
.+.|...+.|.+|+++|++++++|+.....+...++.+ ++..
T Consensus 20 ~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l-~~~~ 61 (230)
T PRK01158 20 RLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLI-GTSG 61 (230)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHh-CCCC
Confidence 36678889999999999999999999998888888777 7653
No 246
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=85.28 E-value=20 Score=29.75 Aligned_cols=101 Identities=16% Similarity=0.129 Sum_probs=64.0
Q ss_pred CCCCChhHHHHHHHHHHC---CCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCC
Q 022348 177 TVEPRPGVLRLMDEAKAA---GKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGI 253 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~---g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi 253 (298)
...++|+..++++..+.. |+.+.-+.+.+....+. ++.+ |-.-.-..-.-+++. .+..+|+.++.+.+..++
T Consensus 102 ~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~-l~~~-G~~~vmPlg~pIGsg---~Gi~~~~~I~~I~e~~~v 176 (248)
T cd04728 102 DKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKR-LEDA-GCAAVMPLGSPIGSG---QGLLNPYNLRIIIERADV 176 (248)
T ss_pred ccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH-HHHc-CCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhCCC
Confidence 346889999999877666 99999566666665544 4343 332210001112222 334458888888776543
Q ss_pred CCCcEEEEecC---hhhHHHHHHcCCeEEEEcCCCc
Q 022348 254 SEKDCLVVEDS---VIGLQAATRAGMACVITYTSST 286 (298)
Q Consensus 254 ~~~~~~~vgD~---~~Di~~a~~aG~~~v~~~~~~~ 286 (298)
.+++|=+ +.|+..+...|...|++++...
T Consensus 177 ----pVI~egGI~tpeda~~AmelGAdgVlV~SAIt 208 (248)
T cd04728 177 ----PVIVDAGIGTPSDAAQAMELGADAVLLNTAIA 208 (248)
T ss_pred ----cEEEeCCCCCHHHHHHHHHcCCCEEEEChHhc
Confidence 3666643 4799999999999998876544
No 247
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=85.12 E-value=2 Score=36.32 Aligned_cols=42 Identities=7% Similarity=0.076 Sum_probs=36.8
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCcc
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMER 221 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~ 221 (298)
.+.+...+.|++|+++|++++++|+.....+...++.+ ++..
T Consensus 19 ~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l-~~~~ 60 (272)
T PRK15126 19 HLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGAL-SLDA 60 (272)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHc-CCCC
Confidence 46778899999999999999999999999888888887 7653
No 248
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=85.00 E-value=2.7 Score=35.96 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=37.1
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCcc
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMER 221 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~ 221 (298)
..++.+.+.|.+|+++|++++++|+.....+....+.+ ++..
T Consensus 18 ~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~L-gl~~ 59 (302)
T PRK12702 18 NSYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQL-RLEH 59 (302)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHh-CCCC
Confidence 35667899999999999999999999999999999888 7763
No 249
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=84.61 E-value=1.4 Score=43.44 Aligned_cols=37 Identities=14% Similarity=0.069 Sum_probs=26.4
Q ss_pred CCChhHHHHHHHHHHC-CCeEEEEeCCChhhHHHHHHH
Q 022348 179 EPRPGVLRLMDEAKAA-GKKVAVCSAATKSSVILCLEN 215 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~-g~~i~i~S~~~~~~~~~~l~~ 215 (298)
.+.|++.++|+.|.+. +..++|+|+.+...++..+..
T Consensus 532 ~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~ 569 (797)
T PLN03063 532 GLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGE 569 (797)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCC
Confidence 4566777778777765 567888888877777766643
No 250
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=84.56 E-value=2.4 Score=34.53 Aligned_cols=40 Identities=13% Similarity=0.148 Sum_probs=34.5
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~ 220 (298)
+.+...+.|++|+++|++++++|+.....+...++.+ ++.
T Consensus 16 i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l-~~~ 55 (225)
T TIGR01482 16 INESALEAIRKAESVGIPVVLVTGNSVQFARALAKLI-GTP 55 (225)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHh-CCC
Confidence 5677888999999999999999999998888888877 643
No 251
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=84.32 E-value=22 Score=30.84 Aligned_cols=97 Identities=14% Similarity=0.168 Sum_probs=66.2
Q ss_pred CCCCChhHHHHHHHHHHC---CCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEe-CCCCC--CCCCCHHHHHHHHHH
Q 022348 177 TVEPRPGVLRLMDEAKAA---GKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLA-GDDVK--QKKPDPSIYVTAAKR 250 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~---g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~-~~~~~--~~KP~~~~~~~~~~~ 250 (298)
...++|+..++++..+.. |+.+.++.+.+....+.. ..+ |-. .+.- +..+| .+-.+|+.++.+.+.
T Consensus 176 ~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l-~~~-g~~------avmPl~~pIGsg~gv~~p~~i~~~~e~ 247 (326)
T PRK11840 176 AKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRL-EDA-GAV------AVMPLGAPIGSGLGIQNPYTIRLIVEG 247 (326)
T ss_pred CCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH-Hhc-CCE------EEeeccccccCCCCCCCHHHHHHHHHc
Confidence 345888898888877766 999977777777755544 333 221 1111 22222 333488999999988
Q ss_pred hCCCCCcEEEEecCh---hhHHHHHHcCCeEEEEcCCC
Q 022348 251 LGISEKDCLVVEDSV---IGLQAATRAGMACVITYTSS 285 (298)
Q Consensus 251 lgi~~~~~~~vgD~~---~Di~~a~~aG~~~v~~~~~~ 285 (298)
..+ -+.+|=+. .|+..|-..|...|++++..
T Consensus 248 ~~v----pVivdAGIg~~sda~~AmelGadgVL~nSaI 281 (326)
T PRK11840 248 ATV----PVLVDAGVGTASDAAVAMELGCDGVLMNTAI 281 (326)
T ss_pred CCC----cEEEeCCCCCHHHHHHHHHcCCCEEEEccee
Confidence 554 37777665 69999999999999877654
No 252
>PRK10976 putative hydrolase; Provisional
Probab=84.21 E-value=2.3 Score=35.79 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=35.7
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~ 220 (298)
.+.+...+.|++++++|++++++|+.....+...++.+ ++.
T Consensus 19 ~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l-~~~ 59 (266)
T PRK10976 19 TLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNL-EIK 59 (266)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhc-CCC
Confidence 36677899999999999999999999998888888887 665
No 253
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=83.92 E-value=2.4 Score=35.64 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=36.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~ 220 (298)
.+.|...+.|.+++++|++++++|+.....+...++.+ ++.
T Consensus 20 ~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l-~~~ 60 (272)
T PRK10530 20 TILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQAL-ALD 60 (272)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhc-CCC
Confidence 46778899999999999999999999998888888887 665
No 254
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=83.68 E-value=2.6 Score=42.03 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=31.2
Q ss_pred CCChhHHHHHHHHHHC-CCeEEEEeCCChhhHHHHHHHH
Q 022348 179 EPRPGVLRLMDEAKAA-GKKVAVCSAATKSSVILCLENL 216 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~-g~~i~i~S~~~~~~~~~~l~~~ 216 (298)
.+.|++.++|+.|.+. +..++|+|+.+...++..+...
T Consensus 622 ~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~ 660 (934)
T PLN03064 622 RLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGEF 660 (934)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCCC
Confidence 5778899999998875 6789999999998888777543
No 255
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=83.49 E-value=3.6 Score=40.00 Aligned_cols=109 Identities=16% Similarity=0.182 Sum_probs=69.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccc---------------------cCcc-eEEeCCCCCC
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERF---------------------EGLD-CFLAGDDVKQ 236 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~---------------------~~fd-~v~~~~~~~~ 236 (298)
++...+.+.+...|..|+++..+|+..+.....+.... |+-.- .+-+ +|+.+.+..
T Consensus 590 PPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA~~v-gIi~~~~et~e~~a~r~~~~v~~vn~~~a~a~VihG~eL~- 667 (1019)
T KOG0203|consen 590 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKSV-GIISEGSETVEDIAKRLNIPVEQVNSRDAKAAVIHGSELP- 667 (1019)
T ss_pred CCcccCchhhhhhhhhCceEEEEecCccchhhhhhhhe-eeecCCchhhhhhHHhcCCcccccCccccceEEEeccccc-
Confidence 47778899999999999999999998777777666665 42210 0001 223333322
Q ss_pred CCCCHHHHHHHHHHhC------CCCC--------------cEEEEecChhhHHHHHHcCCeEEE-EcCCCchhHh
Q 022348 237 KKPDPSIYVTAAKRLG------ISEK--------------DCLVVEDSVIGLQAATRAGMACVI-TYTSSTAEQV 290 (298)
Q Consensus 237 ~KP~~~~~~~~~~~lg------i~~~--------------~~~~vgD~~~Di~~a~~aG~~~v~-~~~~~~~~~~ 290 (298)
.-+++-++.+++... .+|+ -+-+.||+.||-.+.++|.++.++ +.|..-.+|-
T Consensus 668 -~~~~~qld~il~nh~eIVFARTSPqQKLiIVe~cQr~GaiVaVTGDGVNDsPALKKADIGVAMGiaGSDvsKqA 741 (1019)
T KOG0203|consen 668 -DMSSEQLDELLQNHQEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVSKQA 741 (1019)
T ss_pred -ccCHHHHHHHHHhCCceEEEecCccceEEeEhhhhhcCcEEEEeCCCcCCChhhcccccceeeccccchHHHhh
Confidence 122344555554422 1222 256779999999999999999886 5555545443
No 256
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=83.31 E-value=2.6 Score=35.43 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=37.3
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCcc
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMER 221 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~ 221 (298)
+.+.+.+.|++++++|++++++|++....+...++.+ ++..
T Consensus 21 i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l-~~~~ 61 (264)
T COG0561 21 ISPETKEALARLREKGVKVVLATGRPLPDVLSILEEL-GLDG 61 (264)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHc-CCCc
Confidence 6778899999999999999999999999999999998 8774
No 257
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=82.89 E-value=3 Score=35.30 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=35.4
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~ 220 (298)
+.+...+.|++|+++|++++++|+.....+...++.+ ++.
T Consensus 25 i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l-~~~ 64 (271)
T PRK03669 25 DWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTL-GLQ 64 (271)
T ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHh-CCC
Confidence 4566788999999999999999999999999999998 774
No 258
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=82.73 E-value=3 Score=34.87 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=34.1
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc
Q 022348 181 RPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (298)
Q Consensus 181 ~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~ 220 (298)
.+...+.++.|+++|++++++|+.....+...++.+ ++.
T Consensus 18 ~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~-~~~ 56 (256)
T TIGR01486 18 WGPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKEL-GLE 56 (256)
T ss_pred chHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-CCC
Confidence 345789999999999999999999999899999887 764
No 259
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=82.66 E-value=2.4 Score=36.18 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=32.1
Q ss_pred cCCCCCChhHHHHHHHHHHCC-CeEEEEeCCChhhHHHHH
Q 022348 175 SGTVEPRPGVLRLMDEAKAAG-KKVAVCSAATKSSVILCL 213 (298)
Q Consensus 175 ~~~~~~~pg~~~~l~~L~~~g-~~i~i~S~~~~~~~~~~l 213 (298)
.+...++|..-++++.+|+.| ++++++||+....+.+.+
T Consensus 88 ~GEPTLy~~L~elI~~~k~~g~~~tflvTNgslpdv~~~L 127 (296)
T COG0731 88 SGEPTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDVLEEL 127 (296)
T ss_pred CCCcccccCHHHHHHHHHhcCCceEEEEeCCChHHHHHHh
Confidence 345679999999999999999 799999999985444333
No 260
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=82.37 E-value=3.3 Score=33.98 Aligned_cols=41 Identities=22% Similarity=0.421 Sum_probs=37.1
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~ 220 (298)
.+.|...+.|++|+++|++++++|+.....+...+..+ ++.
T Consensus 15 ~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~-~~~ 55 (254)
T PF08282_consen 15 KISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKEL-GID 55 (254)
T ss_dssp SSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHT-THC
T ss_pred eeCHHHHHHHHhhcccceEEEEEccCcccccccccccc-cch
Confidence 47789999999999999999999999999999999877 665
No 261
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=80.58 E-value=2.1 Score=35.06 Aligned_cols=47 Identities=30% Similarity=0.346 Sum_probs=37.6
Q ss_pred CCCHH----HHHHHHHHhCCCC--CcEEEEecCh-hhHHHHHHcCCeEEEEcCCC
Q 022348 238 KPDPS----IYVTAAKRLGISE--KDCLVVEDSV-IGLQAATRAGMACVITYTSS 285 (298)
Q Consensus 238 KP~~~----~~~~~~~~lgi~~--~~~~~vgD~~-~Di~~a~~aG~~~v~~~~~~ 285 (298)
||+|+ .|..-++.+|++| .++=||.|+. +--.+|.-.||. ||++|..
T Consensus 86 KPsP~NiQeLYL~SL~~lGid~~~HDIRFVEDnWE~PTlGawGlGWE-VWldGME 139 (298)
T COG0752 86 KPSPDNIQELYLGSLEALGIDPLEHDIRFVEDNWENPTLGAWGLGWE-VWLDGME 139 (298)
T ss_pred cCCCccHHHHHHHHHHHcCCChhhcceeeeccCCCCCccccccccee-EEEcCee
Confidence 77774 5666789999998 5899999998 577788888988 5877753
No 262
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=80.40 E-value=8.6 Score=33.54 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=27.6
Q ss_pred CCCCCChhHHHHHHHHHHCCCeEEEEeCCChh
Q 022348 176 GTVEPRPGVLRLMDEAKAAGKKVAVCSAATKS 207 (298)
Q Consensus 176 ~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~ 207 (298)
+...++|.+.++++.++++|+.+.+.||+...
T Consensus 139 GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~~ 170 (322)
T PRK13762 139 GEPTLYPYLPELIEEFHKRGFTTFLVTNGTRP 170 (322)
T ss_pred ccccchhhHHHHHHHHHHcCCCEEEECCCCCH
Confidence 34457889999999999999999999999754
No 263
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=79.74 E-value=13 Score=32.13 Aligned_cols=86 Identities=19% Similarity=0.193 Sum_probs=54.9
Q ss_pred CCCChhHHHHHHHHHHCC-CeEEEEeCCChhhHHHHHHHHhCCcccc----------C-cceEEeCCCCCCCCCCHHHHH
Q 022348 178 VEPRPGVLRLMDEAKAAG-KKVAVCSAATKSSVILCLENLIGMERFE----------G-LDCFLAGDDVKQKKPDPSIYV 245 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g-~~i~i~S~~~~~~~~~~l~~~~~l~~~~----------~-fd~v~~~~~~~~~KP~~~~~~ 245 (298)
-.++|||..+.+.|.+.| .++.-+||+.-. .-..|+++++-..+. + +|.++.+.- .-+.....
T Consensus 195 r~~ipGV~~~yr~l~~~~~apvfYvSnSPw~-~f~~L~efi~~~~~P~GPl~L~~~g~~~~~i~~sga----~rK~~~l~ 269 (373)
T COG4850 195 RQVIPGVSAWYRALTNLGDAPVFYVSNSPWQ-LFPTLQEFITNRNFPYGPLLLRRWGGVLDNIIESGA----ARKGQSLR 269 (373)
T ss_pred cCCCCCHHHHHHHHHhcCCCCeEEecCChhH-hHHHHHHHHhcCCCCCCchhHhhcCCcccccccchh----hhcccHHH
Confidence 469999999999999988 899999988655 334444443433221 0 344443322 12234566
Q ss_pred HHHHHhCCCCCcEEEEecCh-hhHHH
Q 022348 246 TAAKRLGISEKDCLVVEDSV-IGLQA 270 (298)
Q Consensus 246 ~~~~~lgi~~~~~~~vgD~~-~Di~~ 270 (298)
.+++++.- .+.+-|||+. .|.+.
T Consensus 270 nil~~~p~--~kfvLVGDsGE~DpeI 293 (373)
T COG4850 270 NILRRYPD--RKFVLVGDSGEHDPEI 293 (373)
T ss_pred HHHHhCCC--ceEEEecCCCCcCHHH
Confidence 66666643 5789999988 58765
No 264
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=79.47 E-value=34 Score=28.20 Aligned_cols=98 Identities=13% Similarity=0.124 Sum_probs=67.0
Q ss_pred CCCChhHHHHHH---HHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCC
Q 022348 178 VEPRPGVLRLMD---EAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGIS 254 (298)
Q Consensus 178 ~~~~pg~~~~l~---~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~ 254 (298)
-.+.|+..++++ .|-+.|+.+.-.++.+....++ |+.. |-.-.-+.-.-+++ +.+--.|..++.+.++..++
T Consensus 110 ~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arr-Lee~-GcaavMPl~aPIGS---g~G~~n~~~l~iiie~a~VP 184 (262)
T COG2022 110 KTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARR-LEEA-GCAAVMPLGAPIGS---GLGLQNPYNLEIIIEEADVP 184 (262)
T ss_pred cccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHH-HHhc-CceEeccccccccC---CcCcCCHHHHHHHHHhCCCC
Confidence 358888888875 5778999999999999875543 4443 32211001111211 23445678999999998775
Q ss_pred CCcEEEEecCh---hhHHHHHHcCCeEEEEcCC
Q 022348 255 EKDCLVVEDSV---IGLQAATRAGMACVITYTS 284 (298)
Q Consensus 255 ~~~~~~vgD~~---~Di~~a~~aG~~~v~~~~~ 284 (298)
+.|+-+. +|...+-..|+..|++|+.
T Consensus 185 ----viVDAGiG~pSdAa~aMElG~DaVL~NTA 213 (262)
T COG2022 185 ----VIVDAGIGTPSDAAQAMELGADAVLLNTA 213 (262)
T ss_pred ----EEEeCCCCChhHHHHHHhcccceeehhhH
Confidence 5676554 7999999999999988764
No 265
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=79.05 E-value=1.2 Score=28.19 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=16.1
Q ss_pred HHHHHHHhCCCCCcEEEEecChhhHHHHH
Q 022348 244 YVTAAKRLGISEKDCLVVEDSVIGLQAAT 272 (298)
Q Consensus 244 ~~~~~~~lgi~~~~~~~vgD~~~Di~~a~ 272 (298)
.+++++++|+ .+++||...|+++.+
T Consensus 7 VqQLLK~fG~----~IY~gdr~~DielM~ 31 (62)
T PF06014_consen 7 VQQLLKKFGI----IIYVGDRLWDIELME 31 (62)
T ss_dssp HHHHHHTTS---------S-HHHHHHHHH
T ss_pred HHHHHHHCCE----EEEeCChHHHHHHHH
Confidence 4678899998 799999999999865
No 266
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=78.85 E-value=4.6 Score=32.31 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=33.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHH
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENL 216 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~ 216 (298)
.+.+.+.+.|++|+++|++++++|++....+...++.+
T Consensus 17 ~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~ 54 (204)
T TIGR01484 17 ELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQL 54 (204)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhC
Confidence 46688999999999999999999999999888888764
No 267
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=77.73 E-value=32 Score=29.26 Aligned_cols=99 Identities=19% Similarity=0.202 Sum_probs=69.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCC----C-CCCCHHHHHHHHHHhCCCCCcE
Q 022348 184 VLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVK----Q-KKPDPSIYVTAAKRLGISEKDC 258 (298)
Q Consensus 184 ~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~----~-~KP~~~~~~~~~~~lgi~~~~~ 258 (298)
+.++|+..+++|+-+.-+--++.+.+..+++.. .-.. -..|+...+.. . .+--..+...++++++++- +
T Consensus 6 ~~~ll~~Ake~~yAvpAfN~~nlE~~~AileaA-~e~~---sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV--~ 79 (286)
T COG0191 6 MKELLDKAKENGYAVPAFNINNLETLQAILEAA-EEEK---SPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPV--A 79 (286)
T ss_pred HHHHHHHHHHcCCceeeeeecCHHHHHHHHHHH-HHhC---CCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCE--E
Confidence 478999999999999888777777788888776 2222 23444433321 1 1222345666778888754 7
Q ss_pred EEEe--cChhhHHHHHHcCCeEEEEcCCCchh
Q 022348 259 LVVE--DSVIGLQAATRAGMACVITYTSSTAE 288 (298)
Q Consensus 259 ~~vg--D~~~Di~~a~~aG~~~v~~~~~~~~~ 288 (298)
++.+ ++..++..+.++|+..+|+.+...+-
T Consensus 80 lHlDHg~~~~~~~~ai~~GFsSvMiDgS~~~~ 111 (286)
T COG0191 80 LHLDHGASFEDCKQAIRAGFSSVMIDGSHLPF 111 (286)
T ss_pred EECCCCCCHHHHHHHHhcCCceEEecCCcCCH
Confidence 7775 55689999999999999999877653
No 268
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=76.87 E-value=28 Score=25.96 Aligned_cols=103 Identities=20% Similarity=0.218 Sum_probs=54.6
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChh-hHHHHHHHHhCCccccC--cceEEeCCCC-----CCCCCCHHHHHHHHHHh
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKS-SVILCLENLIGMERFEG--LDCFLAGDDV-----KQKKPDPSIYVTAAKRL 251 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~-~~~~~l~~~~~l~~~~~--fd~v~~~~~~-----~~~KP~~~~~~~~~~~l 251 (298)
....+.+++.+..++|-++.++-|+... ...+...++.++..... +..+....+. ...--++.+.+.+++.+
T Consensus 20 ~i~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (138)
T PF13580_consen 20 AIEKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLALY 99 (138)
T ss_dssp HHHHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHHc
Confidence 3345677777777888899999887653 34455555544432211 2222222211 00111234557777778
Q ss_pred CCCCCcEEEE----ecChhhHHH---HHHcCCeEEEEc
Q 022348 252 GISEKDCLVV----EDSVIGLQA---ATRAGMACVITY 282 (298)
Q Consensus 252 gi~~~~~~~v----gD~~~Di~~---a~~aG~~~v~~~ 282 (298)
.+.|.+++++ |.+++=+++ |++.|+.+|.+.
T Consensus 100 ~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 100 DIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp T--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 8899998887 566665544 666799998664
No 269
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=76.33 E-value=19 Score=33.75 Aligned_cols=88 Identities=17% Similarity=0.261 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEe
Q 022348 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVE 262 (298)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vg 262 (298)
++...|...+..+-++++++-......-..+..+++++ ++.+.... .-+....-.-+++-|+. ++||
T Consensus 85 Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~----i~~~~~~~-----~~e~~~~~~~l~~~G~~----~viG 151 (526)
T TIGR02329 85 DVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLD----IVQRSYVT-----EEDARSCVNDLRARGIG----AVVG 151 (526)
T ss_pred hHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCc----eEEEEecC-----HHHHHHHHHHHHHCCCC----EEEC
Confidence 45666667777788999998766544444555554554 22222111 00111222233445764 7899
Q ss_pred cChhhHHHHHHcCCeEEEEcCC
Q 022348 263 DSVIGLQAATRAGMACVITYTS 284 (298)
Q Consensus 263 D~~~Di~~a~~aG~~~v~~~~~ 284 (298)
|... ...|+++|++.|++++.
T Consensus 152 ~~~~-~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 152 AGLI-TDLAEQAGLHGVFLYSA 172 (526)
T ss_pred ChHH-HHHHHHcCCceEEEecH
Confidence 9965 78899999999988775
No 270
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=74.90 E-value=21 Score=33.54 Aligned_cols=88 Identities=17% Similarity=0.274 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEe
Q 022348 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVE 262 (298)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vg 262 (298)
++...|...++.+-++++++-......-..+..++++. ++.+.... .-+....-.-+++.|+. ++||
T Consensus 95 Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~----i~~~~~~~-----~~e~~~~v~~lk~~G~~----~vvG 161 (538)
T PRK15424 95 DVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLR----IEQRSYVT-----EEDARGQINELKANGIE----AVVG 161 (538)
T ss_pred HHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCc----eEEEEecC-----HHHHHHHHHHHHHCCCC----EEEc
Confidence 45666667777788999998766554444555554554 22221111 11112222334455774 7899
Q ss_pred cChhhHHHHHHcCCeEEEEcCC
Q 022348 263 DSVIGLQAATRAGMACVITYTS 284 (298)
Q Consensus 263 D~~~Di~~a~~aG~~~v~~~~~ 284 (298)
|... ...|+++|+..+++++.
T Consensus 162 ~~~~-~~~A~~~g~~g~~~~s~ 182 (538)
T PRK15424 162 AGLI-TDLAEEAGMTGIFIYSA 182 (538)
T ss_pred CchH-HHHHHHhCCceEEecCH
Confidence 9776 78999999999988764
No 271
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=74.42 E-value=11 Score=29.55 Aligned_cols=87 Identities=22% Similarity=0.347 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHh---CCCCCcEE
Q 022348 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRL---GISEKDCL 259 (298)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l---gi~~~~~~ 259 (298)
++.+.|..++..+-++++++..+.......+..++++.- ..... .+++-+...++++ |++ +
T Consensus 65 Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i----~~~~~--------~~~~e~~~~i~~~~~~G~~----v 128 (176)
T PF06506_consen 65 DILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDI----KIYPY--------DSEEEIEAAIKQAKAEGVD----V 128 (176)
T ss_dssp HHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EE----EEEEE--------SSHHHHHHHHHHHHHTT------E
T ss_pred HHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCce----EEEEE--------CCHHHHHHHHHHHHHcCCc----E
Confidence 344455555666889999987765543344544446642 22221 1244455555554 653 7
Q ss_pred EEecChhhHHHHHHcCCeEEEEcCCCc
Q 022348 260 VVEDSVIGLQAATRAGMACVITYTSST 286 (298)
Q Consensus 260 ~vgD~~~Di~~a~~aG~~~v~~~~~~~ 286 (298)
+||++.. ...|++.|++++.+.++..
T Consensus 129 iVGg~~~-~~~A~~~gl~~v~i~sg~e 154 (176)
T PF06506_consen 129 IVGGGVV-CRLARKLGLPGVLIESGEE 154 (176)
T ss_dssp EEESHHH-HHHHHHTTSEEEESS--HH
T ss_pred EECCHHH-HHHHHHcCCcEEEEEecHH
Confidence 9999975 7889999999998876443
No 272
>PRK00208 thiG thiazole synthase; Reviewed
Probab=72.82 E-value=55 Score=27.32 Aligned_cols=101 Identities=14% Similarity=0.096 Sum_probs=62.8
Q ss_pred CCCCChhHHHHHHHHHHC---CCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCC
Q 022348 177 TVEPRPGVLRLMDEAKAA---GKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGI 253 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~---g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi 253 (298)
...++|+..++++..+.. |+.+.-+.+.+....+. ++.+ |-+-.-..-.-+++. .+..+|+.++.+.+..++
T Consensus 102 ~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~-l~~~-G~~~vmPlg~pIGsg---~gi~~~~~i~~i~e~~~v 176 (250)
T PRK00208 102 DKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKR-LEEA-GCAAVMPLGAPIGSG---LGLLNPYNLRIIIEQADV 176 (250)
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH-HHHc-CCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhcCC
Confidence 345788898888776666 99998455556554443 4444 333220011122222 233457888888776554
Q ss_pred CCCcEEEEecC---hhhHHHHHHcCCeEEEEcCCCc
Q 022348 254 SEKDCLVVEDS---VIGLQAATRAGMACVITYTSST 286 (298)
Q Consensus 254 ~~~~~~~vgD~---~~Di~~a~~aG~~~v~~~~~~~ 286 (298)
.+.+|=+ +.|+..+...|...|++++...
T Consensus 177 ----pVIveaGI~tpeda~~AmelGAdgVlV~SAIt 208 (250)
T PRK00208 177 ----PVIVDAGIGTPSDAAQAMELGADAVLLNTAIA 208 (250)
T ss_pred ----eEEEeCCCCCHHHHHHHHHcCCCEEEEChHhh
Confidence 3666644 4699999999999998876544
No 273
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=72.35 E-value=1.2 Score=36.93 Aligned_cols=55 Identities=27% Similarity=0.365 Sum_probs=36.8
Q ss_pred cccCcceEEeCCCCCCCCCCH----HHHHHHHHHhCCCC--CcEEEEecCh-hhHHHHHHcCCeEEEEcCC
Q 022348 221 RFEGLDCFLAGDDVKQKKPDP----SIYVTAAKRLGISE--KDCLVVEDSV-IGLQAATRAGMACVITYTS 284 (298)
Q Consensus 221 ~~~~fd~v~~~~~~~~~KP~~----~~~~~~~~~lgi~~--~~~~~vgD~~-~Di~~a~~aG~~~v~~~~~ 284 (298)
++.+|.+++ ||+| +.|..-++.+||++ .++-||.|+. +--.+|.-.||. ||++|-
T Consensus 71 ~y~QfQVil--------KPsP~niq~lYL~SL~~lGId~~~hDIRFVEDnWEsPtLGAwGlGWE-VWldGM 132 (284)
T PF02091_consen 71 HYYQFQVIL--------KPSPDNIQELYLESLEALGIDPKEHDIRFVEDNWESPTLGAWGLGWE-VWLDGM 132 (284)
T ss_dssp EEEEEEEEE--------ES--TTHHHHHHHHHHHCT--CCCS-EEEEEE-EEETTTTEEEEEEE-EEETTC
T ss_pred hhheeEEEE--------cCCCccHHHHHHHHHHHhCCCccccceeEeecCCCCCcccccccccE-EEECCE
Confidence 444455555 6666 67888899999987 5899999998 577888888888 577764
No 274
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=71.25 E-value=17 Score=29.99 Aligned_cols=84 Identities=18% Similarity=0.313 Sum_probs=52.3
Q ss_pred CCeEEEEeCCCh---hhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChh--hHH
Q 022348 195 GKKVAVCSAATK---SSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVI--GLQ 269 (298)
Q Consensus 195 g~~i~i~S~~~~---~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~--Di~ 269 (298)
++.+-+++.+.. ..++...... +..|. .|.++..... ...|-|...+.++..-|++ |++|||.+. +-+
T Consensus 30 dI~vrv~gsGaKm~pe~~e~~~~~~--~~~~~-pdf~I~isPN-~~~PGP~~ARE~l~~~~iP---~IvI~D~p~~k~kd 102 (276)
T PF01993_consen 30 DIDVRVVGSGAKMGPEDVEEVVTKM--LKEWD-PDFVIVISPN-AAAPGPTKAREMLSAKGIP---CIVISDAPTKKAKD 102 (276)
T ss_dssp SEEEEEEEEET--SHHHHHHHHHHH--HHHH---SEEEEE-S--TTSHHHHHHHHHHHHSSS----EEEEEEGGGGGGHH
T ss_pred CceEEEeccCCCCCHHHHHHHHHHH--HHhhC-CCEEEEECCC-CCCCCcHHHHHHHHhCCCC---EEEEcCCCchhhHH
Confidence 788888887753 2233333222 11211 4554433222 3567788899999988985 799999994 788
Q ss_pred HHHHcCCeEEEEcCCC
Q 022348 270 AATRAGMACVITYTSS 285 (298)
Q Consensus 270 ~a~~aG~~~v~~~~~~ 285 (298)
..+..|+++|++....
T Consensus 103 ~l~~~g~GYIivk~Dp 118 (276)
T PF01993_consen 103 ALEEEGFGYIIVKADP 118 (276)
T ss_dssp HHHHTT-EEEEETTS-
T ss_pred HHHhcCCcEEEEecCc
Confidence 9999999999876543
No 275
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=70.45 E-value=32 Score=31.03 Aligned_cols=45 Identities=11% Similarity=0.123 Sum_probs=37.2
Q ss_pred HhCCCCCcEEEEecCh--hhHHHHHHcCCeEEEEcCCCchhHhhhcC
Q 022348 250 RLGISEKDCLVVEDSV--IGLQAATRAGMACVITYTSSTAEQVRIID 294 (298)
Q Consensus 250 ~lgi~~~~~~~vgD~~--~Di~~a~~aG~~~v~~~~~~~~~~~~~~~ 294 (298)
+.|++|++++|-|... .+++.|...|+.++.+++...-+.+.+..
T Consensus 91 ~aG~~~~~I~f~g~~ks~~ei~~a~e~gi~~i~vdS~~El~~l~~~a 137 (394)
T COG0019 91 AAGFPPERIVFSGPAKSEEEIAFALELGIKLINVDSEEELERLSAIA 137 (394)
T ss_pred HcCCChhhEEECCCCCCHHHHHHHHHcCCcEEEeCCHHHHHHHHHhc
Confidence 4499999999999888 49999999999998888877766666554
No 276
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=69.89 E-value=34 Score=27.16 Aligned_cols=96 Identities=13% Similarity=0.095 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHC--CCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEE
Q 022348 183 GVLRLMDEAKAA--GKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLV 260 (298)
Q Consensus 183 g~~~~l~~L~~~--g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~ 260 (298)
-+.+++++|+++ |+++.+-|..... ...++.. +..- ....+ .+-..|...+.+++.+ .|+-+++
T Consensus 36 a~~~Li~~l~~~~p~~~illT~~T~tg--~~~~~~~--~~~~--v~~~~------~P~D~~~~~~rfl~~~--~P~~~i~ 101 (186)
T PF04413_consen 36 AARPLIKRLRKQRPDLRILLTTTTPTG--REMARKL--LPDR--VDVQY------LPLDFPWAVRRFLDHW--RPDLLIW 101 (186)
T ss_dssp HHHHHHHHHTT---TS-EEEEES-CCH--HHHHHGG---GGG---SEEE---------SSHHHHHHHHHHH----SEEEE
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCCch--HHHHHHh--CCCC--eEEEE------eCccCHHHHHHHHHHh--CCCEEEE
Confidence 456788888876 7888877775554 2223222 1111 23333 2344577888888877 6788889
Q ss_pred EecCh--hhHHHHHHcCCeEEEEcCCCchhHhhh
Q 022348 261 VEDSV--IGLQAATRAGMACVITYTSSTAEQVRI 292 (298)
Q Consensus 261 vgD~~--~Di~~a~~aG~~~v~~~~~~~~~~~~~ 292 (298)
++-.. |=+..+++.|++.+++++.-+....+.
T Consensus 102 ~EtElWPnll~~a~~~~ip~~LvNarls~~s~~~ 135 (186)
T PF04413_consen 102 VETELWPNLLREAKRRGIPVVLVNARLSERSFRR 135 (186)
T ss_dssp ES----HHHHHH-----S-EEEEEE---------
T ss_pred EccccCHHHHHHHhhcCCCEEEEeeeeccccchh
Confidence 98777 577788889999999998777665443
No 277
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=69.80 E-value=2.8 Score=31.84 Aligned_cols=15 Identities=27% Similarity=0.594 Sum_probs=13.3
Q ss_pred cEEEEecCCccccch
Q 022348 68 QALIFDCDGVIIESE 82 (298)
Q Consensus 68 k~viFD~DGTL~d~~ 82 (298)
+.+++|+||||+++.
T Consensus 3 ~~lvldld~tl~~~~ 17 (148)
T smart00577 3 KTLVLDLDETLVHST 17 (148)
T ss_pred cEEEEeCCCCeECCC
Confidence 579999999999875
No 278
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=69.43 E-value=6.3 Score=31.34 Aligned_cols=75 Identities=17% Similarity=0.157 Sum_probs=29.8
Q ss_pred HHHHHHHHCCCeEEEEeCCChhhHHHHHHHHh--CCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEec
Q 022348 186 RLMDEAKAAGKKVAVCSAATKSSVILCLENLI--GMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVED 263 (298)
Q Consensus 186 ~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~--~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD 263 (298)
.+|..++++|++++++.+.-..........+. --.-+..||.|+.-++ .-..-+.++|++++++.+.||
T Consensus 109 nll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs~---------~da~r~~~lG~~~~~v~v~Gn 179 (186)
T PF04413_consen 109 NLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQSE---------ADAERFRKLGAPPERVHVTGN 179 (186)
T ss_dssp HHHHH-----S-EEEEEE--------------HHHHHHGGG-SEEEESSH---------HHHHHHHTTT-S--SEEE---
T ss_pred HHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECCH---------HHHHHHHHcCCCcceEEEeCc
Confidence 67899999999999997654332211111110 0011233788876542 223345689999999999999
Q ss_pred ChhhHH
Q 022348 264 SVIGLQ 269 (298)
Q Consensus 264 ~~~Di~ 269 (298)
-.-|..
T Consensus 180 lKfd~~ 185 (186)
T PF04413_consen 180 LKFDQA 185 (186)
T ss_dssp GGG---
T ss_pred chhccc
Confidence 877653
No 279
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=69.30 E-value=73 Score=27.30 Aligned_cols=100 Identities=19% Similarity=0.208 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCC-CCCCH---HHHHHHHHHhCCCCCcE
Q 022348 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQ-KKPDP---SIYVTAAKRLGISEKDC 258 (298)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~-~KP~~---~~~~~~~~~lgi~~~~~ 258 (298)
-+.++|...+++|+-+..+.-.+.+.++.+++-. .-.+ -..|+....... .-+.. .+...++++..++ =+
T Consensus 5 ~~~~~l~~A~~~~yaV~AfN~~n~e~~~avi~AA-ee~~---sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VP--Va 78 (284)
T PRK12737 5 STKNMLKKAQAEGYAVPAFNIHNLETLQVVVETA-AELR---SPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIP--LA 78 (284)
T ss_pred cHHHHHHHHHHcCceEEEEEeCCHHHHHHHHHHH-HHhC---CCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCC--EE
Confidence 3678899999999999999888888888887765 2222 234443322111 11111 2345566677764 35
Q ss_pred EEEec--ChhhHHHHHHcCCeEEEEcCCCchh
Q 022348 259 LVVED--SVIGLQAATRAGMACVITYTSSTAE 288 (298)
Q Consensus 259 ~~vgD--~~~Di~~a~~aG~~~v~~~~~~~~~ 288 (298)
++.+= +..++..|-.+|++.|++.+...+-
T Consensus 79 lHLDH~~~~e~i~~ai~~GftSVMiDgS~lp~ 110 (284)
T PRK12737 79 LHLDHHEDLDDIKKKVRAGIRSVMIDGSHLSF 110 (284)
T ss_pred EECCCCCCHHHHHHHHHcCCCeEEecCCCCCH
Confidence 66653 3468888999999999999876543
No 280
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=69.01 E-value=10 Score=31.51 Aligned_cols=38 Identities=5% Similarity=0.019 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc
Q 022348 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (298)
Q Consensus 182 pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~ 220 (298)
|.+.+++++++++|+.++++|+.....+...++.+ ++.
T Consensus 24 ~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~-~~~ 61 (249)
T TIGR01485 24 LRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQK-PLL 61 (249)
T ss_pred HHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcC-CCC
Confidence 56778888999999999999999998888887766 554
No 281
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=68.61 E-value=6.1 Score=39.62 Aligned_cols=47 Identities=28% Similarity=0.289 Sum_probs=39.3
Q ss_pred CCCH----HHHHHHHHHhCCCC--CcEEEEecCh-hhHHHHHHcCCeEEEEcCCC
Q 022348 238 KPDP----SIYVTAAKRLGISE--KDCLVVEDSV-IGLQAATRAGMACVITYTSS 285 (298)
Q Consensus 238 KP~~----~~~~~~~~~lgi~~--~~~~~vgD~~-~Di~~a~~aG~~~v~~~~~~ 285 (298)
||+| +.|..-++.+|+++ .++-||.|+. +-..+|.-.||. ||++|-.
T Consensus 86 kp~p~~~q~~yl~sl~~~gi~~~~~dirfved~we~p~lga~glgwe-vw~~gme 139 (1000)
T PRK14908 86 KPVPGNPQELYLESLKAIGIDLRDHDIRFVHDDWENPTIGAWGLGWE-VWLDGME 139 (1000)
T ss_pred CCCCccHHHHHHHHHHHcCCCccccceeEeecCCCCCcccccccccE-EEECCee
Confidence 6666 57888899999987 5899999999 689999999999 5887753
No 282
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=67.67 E-value=43 Score=26.11 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHhCCCCCcEEEEecCh
Q 022348 240 DPSIYVTAAKRLGISEKDCLVVEDSV 265 (298)
Q Consensus 240 ~~~~~~~~~~~lgi~~~~~~~vgD~~ 265 (298)
++.-.+.+++..+-...++++||=+.
T Consensus 86 ~~~~~~~i~~~I~~~~pdiv~vglG~ 111 (172)
T PF03808_consen 86 DEEEEEAIINRINASGPDIVFVGLGA 111 (172)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEECCC
Confidence 33444555555554445666666544
No 283
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=67.58 E-value=79 Score=27.05 Aligned_cols=99 Identities=16% Similarity=0.165 Sum_probs=65.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCC-CC---CHHHHHHHHHHhCCCCCcEE
Q 022348 184 VLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQK-KP---DPSIYVTAAKRLGISEKDCL 259 (298)
Q Consensus 184 ~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~-KP---~~~~~~~~~~~lgi~~~~~~ 259 (298)
+.++|...+++|+-+..+.-.+.+.++.+++-. .-.+- ..|+........ -+ -..+...++++..++ =++
T Consensus 4 ~k~ll~~A~~~~yAV~AfN~~n~e~~~avi~AA-ee~~s---PvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VP--Val 77 (282)
T TIGR01858 4 TKYMLQDAQAGGYAVPAFNIHNLETIQAVVETA-AEMRS---PVILAGTPGTFKHAGTEYIVALCSAASTTYNMP--LAL 77 (282)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHH-HHhCC---CEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCC--EEE
Confidence 568899999999999999888888888887766 32221 344433221111 11 113455566667764 366
Q ss_pred EEe--cChhhHHHHHHcCCeEEEEcCCCchh
Q 022348 260 VVE--DSVIGLQAATRAGMACVITYTSSTAE 288 (298)
Q Consensus 260 ~vg--D~~~Di~~a~~aG~~~v~~~~~~~~~ 288 (298)
+.+ .+..++..|-.+|+..||+.+...+-
T Consensus 78 HLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~ 108 (282)
T TIGR01858 78 HLDHHESLDDIRQKVHAGVRSAMIDGSHFPF 108 (282)
T ss_pred ECCCCCCHHHHHHHHHcCCCEEeecCCCCCH
Confidence 664 44568888999999999999876543
No 284
>PTZ00174 phosphomannomutase; Provisional
Probab=67.40 E-value=11 Score=31.26 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=30.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHH
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLE 214 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~ 214 (298)
.+.|...+.|++++++|++++++|+.....+...++
T Consensus 22 ~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 22 PITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 466778899999999999999999998876666554
No 285
>PLN02887 hydrolase family protein
Probab=66.89 E-value=12 Score=35.50 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=36.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~ 220 (298)
.+.+...+.|++++++|++++++|+.....+...++.+ ++.
T Consensus 325 ~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L-~l~ 365 (580)
T PLN02887 325 QISETNAKALKEALSRGVKVVIATGKARPAVIDILKMV-DLA 365 (580)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHh-Ccc
Confidence 46788899999999999999999999999888888887 664
No 286
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=66.68 E-value=17 Score=23.75 Aligned_cols=45 Identities=20% Similarity=0.340 Sum_probs=37.5
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeE
Q 022348 234 VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMAC 278 (298)
Q Consensus 234 ~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~ 278 (298)
++..-|-...++.+++++++++..+..|-+...++-.++.+|--.
T Consensus 22 VpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvf 66 (82)
T cd01766 22 VPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVF 66 (82)
T ss_pred ccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhccccee
Confidence 345567788999999999999999999988888888888888543
No 287
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=66.34 E-value=3.5 Score=31.96 Aligned_cols=15 Identities=27% Similarity=0.594 Sum_probs=13.2
Q ss_pred cEEEEecCCccccch
Q 022348 68 QALIFDCDGVIIESE 82 (298)
Q Consensus 68 k~viFD~DGTL~d~~ 82 (298)
+.+++|+|+||+.+.
T Consensus 2 ~~lvlDLDeTLi~~~ 16 (162)
T TIGR02251 2 KTLVLDLDETLVHST 16 (162)
T ss_pred cEEEEcCCCCcCCCC
Confidence 579999999999874
No 288
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=64.97 E-value=21 Score=27.12 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=24.0
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChh
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKS 207 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~ 207 (298)
..+.+.++++.+++.|+++++.||....
T Consensus 73 ~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~ 100 (147)
T TIGR02826 73 NREALLSLLKIFKEKGLKTCLYTGLEPK 100 (147)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCH
Confidence 4467899999999999999999987654
No 289
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=63.86 E-value=77 Score=27.85 Aligned_cols=93 Identities=12% Similarity=0.018 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCCh-h--hHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEE
Q 022348 183 GVLRLMDEAKAAGKKVAVCSAATK-S--SVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCL 259 (298)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~S~~~~-~--~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~ 259 (298)
...++++.|.+.|+++.++-+... + ..+.+.+.. ... ..+. -.+|-+-.-+..+++... +
T Consensus 203 ~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~-~~~-----~~~~-----l~g~~sL~el~ali~~a~------l 265 (352)
T PRK10422 203 KFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGC-QTP-----PVTA-----LAGKTTFPELGALIDHAQ------L 265 (352)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhc-CCC-----cccc-----ccCCCCHHHHHHHHHhCC------E
Confidence 557788888888888776644322 1 122222211 110 1110 123433333444444432 6
Q ss_pred EEecChhhHHHHHHcCCeEEEEcCCCchhHhhh
Q 022348 260 VVEDSVIGLQAATRAGMACVITYTSSTAEQVRI 292 (298)
Q Consensus 260 ~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~~~~ 292 (298)
+||..-.-+..|.+.|.++|.+.|+.++..+.-
T Consensus 266 ~v~nDSGp~HlAaA~g~P~v~lfGpt~p~~~~P 298 (352)
T PRK10422 266 FIGVDSAPAHIAAAVNTPLICLFGATDHIFWRP 298 (352)
T ss_pred EEecCCHHHHHHHHcCCCEEEEECCCCccccCC
Confidence 888888888899999999999998877665543
No 290
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=63.72 E-value=95 Score=26.71 Aligned_cols=94 Identities=12% Similarity=-0.061 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCChh--hHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEE
Q 022348 182 PGVLRLMDEAKAAGKKVAVCSAATKS--SVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCL 259 (298)
Q Consensus 182 pg~~~~l~~L~~~g~~i~i~S~~~~~--~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~ 259 (298)
+...++++.|.++|+++.++-++..+ ....+.+.+ + ...+ .++-+-.-+..++++. -+
T Consensus 198 e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~-~-------~~~l------~g~~sL~el~ali~~a------~l 257 (319)
T TIGR02193 198 ERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEAL-P-------GAVV------LPKMSLAEVAALLAGA------DA 257 (319)
T ss_pred HHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhC-C-------CCee------cCCCCHHHHHHHHHcC------CE
Confidence 35677888887778777665343322 222222211 1 0111 1233322233333332 26
Q ss_pred EEecChhhHHHHHHcCCeEEEEcCCCchhHhhhcCC
Q 022348 260 VVEDSVIGLQAATRAGMACVITYTSSTAEQVRIIDP 295 (298)
Q Consensus 260 ~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~~~~~~~ 295 (298)
+||..-.-+.+|...|.++|.++|+..+..+..++.
T Consensus 258 ~I~~DSgp~HlAaa~g~P~i~lfg~t~p~~~~P~~~ 293 (319)
T TIGR02193 258 VVGVDTGLTHLAAALDKPTVTLYGATDPGRTGGYGK 293 (319)
T ss_pred EEeCCChHHHHHHHcCCCEEEEECCCCHhhcccCCC
Confidence 888777788889999999999999888776554443
No 291
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=62.79 E-value=11 Score=31.93 Aligned_cols=38 Identities=8% Similarity=-0.013 Sum_probs=32.4
Q ss_pred CCChhHHHHHHHHHH-CCCeEEEEeCCChhhHHHHHHHH
Q 022348 179 EPRPGVLRLMDEAKA-AGKKVAVCSAATKSSVILCLENL 216 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~-~g~~i~i~S~~~~~~~~~~l~~~ 216 (298)
.+.|.+.+.|+.|++ .|+.++|+|+.....+...++.+
T Consensus 36 ~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~ 74 (266)
T PRK10187 36 VVPDNILQGLQLLATANDGALALISGRSMVELDALAKPY 74 (266)
T ss_pred cCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcc
Confidence 467889999999998 79999999999998887776544
No 292
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=62.40 E-value=1e+02 Score=26.46 Aligned_cols=102 Identities=12% Similarity=0.072 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCC-C-CC---CHHHHHHHHHHhCCCCCc
Q 022348 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQ-K-KP---DPSIYVTAAKRLGISEKD 257 (298)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~-~-KP---~~~~~~~~~~~lgi~~~~ 257 (298)
-+.++|...+++++-+..+.-.+.+.++.+++-. .-.+ -..|+....... . -+ -..+.+.++++..++-.=
T Consensus 5 ~~~~lL~~A~~~~yAV~AfN~~n~e~~~avi~AA-e~~~---sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV 80 (285)
T PRK07709 5 SMKEMLNKALEGKYAVGQFNMNNLEWTQAILAAA-EEEK---SPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPV 80 (285)
T ss_pred cHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHH-HHHC---CCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcE
Confidence 3678999999999999988888888888777665 2222 234443332111 1 11 123455566666533234
Q ss_pred EEEEec--ChhhHHHHHHcCCeEEEEcCCCchh
Q 022348 258 CLVVED--SVIGLQAATRAGMACVITYTSSTAE 288 (298)
Q Consensus 258 ~~~vgD--~~~Di~~a~~aG~~~v~~~~~~~~~ 288 (298)
+++.+= +..++..|-.+|+..||+.+...+-
T Consensus 81 ~lHLDHg~~~e~i~~ai~~GftSVM~DgS~lp~ 113 (285)
T PRK07709 81 AIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPF 113 (285)
T ss_pred EEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCH
Confidence 677763 3468888999999999999877653
No 293
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=62.06 E-value=38 Score=27.10 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=22.9
Q ss_pred cEEEEecChhhHH------HHHHcCCeEE-EEcCCCchhHhhh
Q 022348 257 DCLVVEDSVIGLQ------AATRAGMACV-ITYTSSTAEQVRI 292 (298)
Q Consensus 257 ~~~~vgD~~~Di~------~a~~aG~~~v-~~~~~~~~~~~~~ 292 (298)
+.++.||...|.+ .+.++|+..+ .+|+....+.+.+
T Consensus 90 ~~vv~G~i~sd~~~~~~e~~~~~~gl~~~~PLW~~~~~~ll~e 132 (194)
T cd01994 90 DAVVFGAILSEYQRTRVERVCERLGLEPLAPLWGRDQEELLRE 132 (194)
T ss_pred CEEEECccccHHHHHHHHHHHHHcCCEEEecccCCCHHHHHHH
Confidence 4677777765543 3566777776 6777666555444
No 294
>PRK08185 hypothetical protein; Provisional
Probab=61.62 E-value=76 Score=27.15 Aligned_cols=98 Identities=15% Similarity=0.078 Sum_probs=63.9
Q ss_pred HHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCC---CCCCCHHHHHHHHHHhCCCCCcEEEE
Q 022348 185 LRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVK---QKKPDPSIYVTAAKRLGISEKDCLVV 261 (298)
Q Consensus 185 ~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~---~~KP~~~~~~~~~~~lgi~~~~~~~v 261 (298)
.++|...++.|+-++.+.-.+.+.++.+++-. .-.. -..|+...... .+.+-..+...++++..++ =+++.
T Consensus 2 ~~~L~~A~~~~yaV~AfN~~n~e~~~avi~AA-ee~~---sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vP--V~lHL 75 (283)
T PRK08185 2 KELLKVAKEHQFAVGAFNVADSCFLRAVVEEA-EANN---APAIIAIHPNELDFLGDNFFAYVRERAKRSPVP--FVIHL 75 (283)
T ss_pred HHHHHHHHHcCceEEEEEeCCHHHHHHHHHHH-HHhC---CCEEEEeCcchhhhccHHHHHHHHHHHHHCCCC--EEEEC
Confidence 57888899999999999888888888777665 2222 13444332211 1222334455566667664 35666
Q ss_pred ec--ChhhHHHHHHcCCeEEEEcCCCchh
Q 022348 262 ED--SVIGLQAATRAGMACVITYTSSTAE 288 (298)
Q Consensus 262 gD--~~~Di~~a~~aG~~~v~~~~~~~~~ 288 (298)
+= +..+++.|-.+|+..|++.+...+.
T Consensus 76 DHg~~~e~i~~ai~~Gf~SVM~D~S~l~~ 104 (283)
T PRK08185 76 DHGATIEDVMRAIRCGFTSVMIDGSLLPY 104 (283)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEeCCCCCH
Confidence 53 3468888999999999998876543
No 295
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=61.21 E-value=47 Score=28.56 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCChh
Q 022348 182 PGVLRLMDEAKAAGKKVAVCSAATKS 207 (298)
Q Consensus 182 pg~~~~l~~L~~~g~~i~i~S~~~~~ 207 (298)
||+..+-+.|++.|.++.++|.....
T Consensus 63 ~GA~aLa~aL~~lG~~~~ivtd~~~~ 88 (291)
T PF14336_consen 63 PGAAALARALQALGKEVVIVTDERCA 88 (291)
T ss_pred HHHHHHHHHHHHcCCeEEEEECHHHH
Confidence 58888888999999999999976533
No 296
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=61.14 E-value=6.1 Score=32.59 Aligned_cols=37 Identities=14% Similarity=-0.022 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHhCCC---CCcEEEEecChhhHHHHHHcCC
Q 022348 240 DPSIYVTAAKRLGIS---EKDCLVVEDSVIGLQAATRAGM 276 (298)
Q Consensus 240 ~~~~~~~~~~~lgi~---~~~~~~vgD~~~Di~~a~~aG~ 276 (298)
|..+.+.++++++.. +.-++++||...|-.+.+.+.-
T Consensus 166 KG~av~~ll~~~~~~~~~~~~~l~~GDD~tDE~~f~~~~~ 205 (235)
T PF02358_consen 166 KGSAVRRLLEELPFAGPKPDFVLYIGDDRTDEDAFRALRE 205 (235)
T ss_dssp HHHHHHHHHTTS---------EEEEESSHHHHHHHHTTTT
T ss_pred hHHHHHHHHHhcCccccccceeEEecCCCCCHHHHHHHHh
Confidence 577888899888765 6779999999999999888644
No 297
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=60.90 E-value=90 Score=27.25 Aligned_cols=95 Identities=16% Similarity=0.075 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCCh-h--hHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEE
Q 022348 183 GVLRLMDEAKAAGKKVAVCSAATK-S--SVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCL 259 (298)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~S~~~~-~--~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~ 259 (298)
...++++.|.+.|+++.++-+... + ....+.+.. +-. .++ + ..+|.+-.-+..++++.. +
T Consensus 201 ~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~-~~~------~~~--~--l~g~~sL~el~ali~~a~------l 263 (344)
T TIGR02201 201 RFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGC-QTP------RVT--S--LAGKLTLPQLAALIDHAR------L 263 (344)
T ss_pred HHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhC-CCC------ccc--c--cCCCCCHHHHHHHHHhCC------E
Confidence 345788888888888776643221 1 122222211 111 111 0 124544444444444332 6
Q ss_pred EEecChhhHHHHHHcCCeEEEEcCCCchhHhhhcC
Q 022348 260 VVEDSVIGLQAATRAGMACVITYTSSTAEQVRIID 294 (298)
Q Consensus 260 ~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~~~~~~ 294 (298)
+||....-+.+|.+.|.++|.+.|+.++..+...+
T Consensus 264 ~Vs~DSGp~HlAaA~g~p~v~Lfgpt~p~~~~P~~ 298 (344)
T TIGR02201 264 FIGVDSVPMHMAAALGTPLVALFGPSKHIFWRPWS 298 (344)
T ss_pred EEecCCHHHHHHHHcCCCEEEEECCCCccccccCC
Confidence 88877788999999999999999987776655443
No 298
>PRK08005 epimerase; Validated
Probab=60.74 E-value=90 Score=25.38 Aligned_cols=94 Identities=7% Similarity=0.058 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcce--EEeCCC-CCCCCCCHHHHHHHHHHhCCCCCcE
Q 022348 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDC--FLAGDD-VKQKKPDPSIYVTAAKRLGISEKDC 258 (298)
Q Consensus 182 pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~--v~~~~~-~~~~KP~~~~~~~~~~~lgi~~~~~ 258 (298)
+...++++.+|+.|.+.++.=|-... +..+...+ .. .|. +.+.+. .+-.|-.+..++++.+--...++.-
T Consensus 93 ~~~~~~l~~Ik~~G~k~GlAlnP~Tp-~~~i~~~l-~~-----vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~ 165 (210)
T PRK08005 93 QNPSEILADIRAIGAKAGLALNPATP-LLPYRYLA-LQ-----LDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAE 165 (210)
T ss_pred cCHHHHHHHHHHcCCcEEEEECCCCC-HHHHHHHH-Hh-----cCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCC
Confidence 45678999999999999999887654 33333222 21 233 333332 2233455667777764333323222
Q ss_pred EEEecChh--hHHHHHHcCCeEEEEc
Q 022348 259 LVVEDSVI--GLQAATRAGMACVITY 282 (298)
Q Consensus 259 ~~vgD~~~--Di~~a~~aG~~~v~~~ 282 (298)
+-|+=+.+ .+..+..+|...++..
T Consensus 166 I~VDGGI~~~~i~~l~~aGad~~V~G 191 (210)
T PRK08005 166 CWADGGITLRAARLLAAAGAQHLVIG 191 (210)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEEC
Confidence 66766664 7888899999976543
No 299
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=60.39 E-value=35 Score=25.54 Aligned_cols=49 Identities=16% Similarity=0.136 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHHHhCCCCC-cEEEEecC----h---hhHHHHHHcCCeEE-EEcCC
Q 022348 236 QKKPDPSIYVTAAKRLGISEK-DCLVVEDS----V---IGLQAATRAGMACV-ITYTS 284 (298)
Q Consensus 236 ~~KP~~~~~~~~~~~lgi~~~-~~~~vgD~----~---~Di~~a~~aG~~~v-~~~~~ 284 (298)
...|.++-++.+++++|++++ .+|+++++ . .-.-+++.+|..-| +++|+
T Consensus 75 ~~~p~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG 132 (138)
T cd01445 75 SMEPSEAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGG 132 (138)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCC
Confidence 346777889999999999874 66667654 1 23345677898877 45544
No 300
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=60.01 E-value=1.1e+02 Score=26.17 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCC-CCC---CHHHHHHHHHHhCCCCCcE
Q 022348 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQ-KKP---DPSIYVTAAKRLGISEKDC 258 (298)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~-~KP---~~~~~~~~~~~lgi~~~~~ 258 (298)
-+.++|...+++|+-+..+.-.+...++.+++.. .-.. -..|+....... ..+ -..+...++++.+++ =+
T Consensus 5 ~~k~ll~~A~~~~yaV~AfN~~n~e~~~avi~AA-e~~~---sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vP--V~ 78 (283)
T PRK07998 5 NGRILLDRIQEKHVLAGAFNTTNLETTISILNAI-ERSG---LPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVP--VS 78 (283)
T ss_pred cHHHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHH-HHhC---CCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCC--EE
Confidence 3678999999999999988877888788777665 2221 134443322111 111 122455566777774 35
Q ss_pred EEEecC--hhhHHHHHHcCCeEEEEcCCCchh
Q 022348 259 LVVEDS--VIGLQAATRAGMACVITYTSSTAE 288 (298)
Q Consensus 259 ~~vgD~--~~Di~~a~~aG~~~v~~~~~~~~~ 288 (298)
++.+=+ ..++..|-++|+..|++.+...+-
T Consensus 79 lHLDH~~~~e~i~~Ai~~GftSVM~DgS~l~~ 110 (283)
T PRK07998 79 LHLDHGKTFEDVKQAVRAGFTSVMIDGAALPF 110 (283)
T ss_pred EECcCCCCHHHHHHHHHcCCCEEEEeCCCCCH
Confidence 666533 357888889999999998766543
No 301
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=59.22 E-value=66 Score=25.08 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=14.4
Q ss_pred HHHHHHHHHCCCeEEEEeCCChhhHHHH
Q 022348 185 LRLMDEAKAAGKKVAVCSAATKSSVILC 212 (298)
Q Consensus 185 ~~~l~~L~~~g~~i~i~S~~~~~~~~~~ 212 (298)
.++++.+.+++.+++++ ++....+...
T Consensus 36 ~~ll~~~~~~~~~v~ll-G~~~~~~~~~ 62 (171)
T cd06533 36 PALLELAAQKGLRVFLL-GAKPEVLEKA 62 (171)
T ss_pred HHHHHHHHHcCCeEEEE-CCCHHHHHHH
Confidence 34555566666777777 3333334443
No 302
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.53 E-value=12 Score=23.82 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=21.9
Q ss_pred HHHHHHHhCCCCCcEEEEecChhhHHHHHH
Q 022348 244 YVTAAKRLGISEKDCLVVEDSVIGLQAATR 273 (298)
Q Consensus 244 ~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~ 273 (298)
.+++++++|+ ++++||...|+++.+.
T Consensus 7 VqQlLK~~G~----ivyfg~r~~~iemm~~ 32 (68)
T COG4483 7 VQQLLKKFGI----IVYFGKRLYDIEMMQI 32 (68)
T ss_pred HHHHHHHCCe----eeecCCHHHHHHHHHH
Confidence 4678889998 7999999999998753
No 303
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=57.79 E-value=91 Score=24.48 Aligned_cols=32 Identities=13% Similarity=0.290 Sum_probs=26.6
Q ss_pred CCCCCChhHHHHHHHHHHCCCeEEEEeCCChh
Q 022348 176 GTVEPRPGVLRLMDEAKAAGKKVAVCSAATKS 207 (298)
Q Consensus 176 ~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~ 207 (298)
+...+.|.+.++++.+++.|+.+.+.||+...
T Consensus 71 GEPll~~~l~~li~~~~~~g~~v~i~TNg~~~ 102 (191)
T TIGR02495 71 GEPTLQAGLPDFLRKVRELGFEVKLDTNGSNP 102 (191)
T ss_pred CcccCcHhHHHHHHHHHHCCCeEEEEeCCCCH
Confidence 34456788899999999999999999999743
No 304
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=57.60 E-value=10 Score=32.74 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=33.4
Q ss_pred CCCCCCHHHHHHHHHH-------h-CCC-CCcEEEEecCh-hhHHHHH---------------HcCCeEEEEc
Q 022348 235 KQKKPDPSIYVTAAKR-------L-GIS-EKDCLVVEDSV-IGLQAAT---------------RAGMACVITY 282 (298)
Q Consensus 235 ~~~KP~~~~~~~~~~~-------l-gi~-~~~~~~vgD~~-~Di~~a~---------------~aG~~~v~~~ 282 (298)
..+||.+-.|+.+... . +.. ++...+|||++ .|+..|. .-||..|++.
T Consensus 268 t~GKPt~ltY~~A~~vl~~~ak~~~~~~~~k~lymvGDNP~sDv~GA~lf~~yap~~~~g~~~~~~w~SILV~ 340 (389)
T KOG1618|consen 268 TLGKPTKLTYDYAEDVLRRQAKRRGGAAPIKKLYMVGDNPMSDVRGANLFHQYAPELGAGGSANYGWISILVR 340 (389)
T ss_pred ccCCCceehHHhHHHHHHHHHHhhcccCCcceeeeecCCCcccccccccccccccccccccccCCCceEEEEe
Confidence 3678888766655322 2 333 57899999999 5999996 5677776553
No 305
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=57.31 E-value=70 Score=28.14 Aligned_cols=98 Identities=12% Similarity=0.029 Sum_probs=51.4
Q ss_pred HHHHHHHHHHC-CCe-EEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHh-CCCCCcEEE
Q 022348 184 VLRLMDEAKAA-GKK-VAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRL-GISEKDCLV 260 (298)
Q Consensus 184 ~~~~l~~L~~~-g~~-i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l-gi~~~~~~~ 260 (298)
+..+++.|+++ ++. ..++|+........+++.+ ++..- ++..+.+......+-....+..+.+.+ ...|+=++.
T Consensus 16 ~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~-~i~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiv~~ 92 (365)
T TIGR00236 16 MAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDLF-HLPPD--YDLNIMSPGQTLGEITSNMLEGLEELLLEEKPDIVLV 92 (365)
T ss_pred HHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhc-CCCCC--eeeecCCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 45677888876 343 4666776666666777665 77521 233332211111121122222232222 224555666
Q ss_pred EecChh---hHHHHHHcCCeEEEEcCC
Q 022348 261 VEDSVI---GLQAATRAGMACVITYTS 284 (298)
Q Consensus 261 vgD~~~---Di~~a~~aG~~~v~~~~~ 284 (298)
.||... -..+|...|++.+.+.++
T Consensus 93 ~gd~~~~la~a~aa~~~~ipv~h~~~g 119 (365)
T TIGR00236 93 QGDTTTTLAGALAAFYLQIPVGHVEAG 119 (365)
T ss_pred eCCchHHHHHHHHHHHhCCCEEEEeCC
Confidence 778764 445667789998766443
No 306
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=57.21 E-value=1.3e+02 Score=25.92 Aligned_cols=102 Identities=16% Similarity=0.140 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCC-CCHH----HHHHHHHHhCCCCCc
Q 022348 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKK-PDPS----IYVTAAKRLGISEKD 257 (298)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~K-P~~~----~~~~~~~~lgi~~~~ 257 (298)
-+.++|...+++|+-+..+.-.+.+.++.+++-. .-.+ -..|+........- ...+ +...++++.+.+-.=
T Consensus 5 ~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AA-ee~~---sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV 80 (288)
T TIGR00167 5 DVKELLQDAKEEGYAIPAFNINNLETINAVLEAA-AEEK---SPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPV 80 (288)
T ss_pred cHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHH-HHHC---CCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcE
Confidence 4678999999999999988877888888777665 2222 13444433222111 1133 344455556333234
Q ss_pred EEEEec--ChhhHHHHHHcCCeEEEEcCCCchh
Q 022348 258 CLVVED--SVIGLQAATRAGMACVITYTSSTAE 288 (298)
Q Consensus 258 ~~~vgD--~~~Di~~a~~aG~~~v~~~~~~~~~ 288 (298)
+++.+= +..++..|.++|+..|++.+...+-
T Consensus 81 ~lHLDHg~~~e~i~~ai~~GftSVMiDgS~lp~ 113 (288)
T TIGR00167 81 ALHLDHGASEEDCAQAVKAGFSSVMIDGSHEPF 113 (288)
T ss_pred EEECCCCCCHHHHHHHHHcCCCEEEecCCCCCH
Confidence 566542 3367888888999999999876543
No 307
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=56.59 E-value=18 Score=29.46 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=24.7
Q ss_pred CCChh-HHHHHHHHHHCCCeEEEEeCCChh
Q 022348 179 EPRPG-VLRLMDEAKAAGKKVAVCSAATKS 207 (298)
Q Consensus 179 ~~~pg-~~~~l~~L~~~g~~i~i~S~~~~~ 207 (298)
.+.++ +.++++.+|+.|+.+++.||+...
T Consensus 50 llq~~fl~~l~~~~k~~gi~~~leTnG~~~ 79 (213)
T PRK10076 50 LMQAEFATRFLQRLRLWGVSCAIETAGDAP 79 (213)
T ss_pred HcCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 45666 689999999999999999999654
No 308
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=56.38 E-value=9.8 Score=31.56 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=27.1
Q ss_pred CCCCCChhHHHHHHHHHHCCCeEEEEeCCChh
Q 022348 176 GTVEPRPGVLRLMDEAKAAGKKVAVCSAATKS 207 (298)
Q Consensus 176 ~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~ 207 (298)
+...+.++..++++.+++.|+++.+.||+...
T Consensus 81 GEPll~~~l~~li~~l~~~g~~v~leTNGtl~ 112 (238)
T TIGR03365 81 GNPALQKPLGELIDLGKAKGYRFALETQGSVW 112 (238)
T ss_pred CchhhhHhHHHHHHHHHHCCCCEEEECCCCCc
Confidence 33346688999999999999999999999864
No 309
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=56.00 E-value=1.2e+02 Score=25.42 Aligned_cols=98 Identities=16% Similarity=0.182 Sum_probs=53.1
Q ss_pred CChhHHHHHHHHHHCCCeEE-EEeCCCh-hhHHHHHHHHhCCccccCcceEEeCCCCC-CC-CCCHHHHHHHHHHhCCCC
Q 022348 180 PRPGVLRLMDEAKAAGKKVA-VCSAATK-SSVILCLENLIGMERFEGLDCFLAGDDVK-QK-KPDPSIYVTAAKRLGISE 255 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~-i~S~~~~-~~~~~~l~~~~~l~~~~~fd~v~~~~~~~-~~-KP~~~~~~~~~~~lgi~~ 255 (298)
+.+...++++.++++|+... +++-... +.+..+++.. .+|..+++...+. .. .-.+...+.+-+--...
T Consensus 125 p~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~------~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~- 197 (256)
T TIGR00262 125 PLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKS------QGFVYLVSRAGVTGARNRAASALNELVKRLKAYS- 197 (256)
T ss_pred ChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhC------CCCEEEEECCCCCCCcccCChhHHHHHHHHHhhc-
Confidence 45677889999999998866 5544443 3344444432 2245555543221 11 12233322222111111
Q ss_pred CcEEEEecCh---hhHHHHHHcCCeEEEEcCC
Q 022348 256 KDCLVVEDSV---IGLQAATRAGMACVITYTS 284 (298)
Q Consensus 256 ~~~~~vgD~~---~Di~~a~~aG~~~v~~~~~ 284 (298)
..-++||=+. .++..+..+|...+++.+.
T Consensus 198 ~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSa 229 (256)
T TIGR00262 198 AKPVLVGFGISKPEQVKQAIDAGADGVIVGSA 229 (256)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHH
Confidence 1237777555 4888888899998766543
No 310
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=55.85 E-value=1.1e+02 Score=24.63 Aligned_cols=98 Identities=11% Similarity=0.018 Sum_probs=54.3
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCC-CCCCCCCHHHHHHHHHHhCCCCCcE
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDD-VKQKKPDPSIYVTAAKRLGISEKDC 258 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~-~~~~KP~~~~~~~~~~~lgi~~~~~ 258 (298)
.-.+..++++++|++|.++++.-+-... ++.+.... ..-+ +-.|.+.+. .+.-|--+++..++-.--.-.|.=.
T Consensus 97 ~~q~~~~lv~~ir~~Gmk~G~alkPgT~-Ve~~~~~~-~~~D---~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ 171 (224)
T KOG3111|consen 97 ATQKPAELVEKIREKGMKVGLALKPGTP-VEDLEPLA-EHVD---MVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLD 171 (224)
T ss_pred eccCHHHHHHHHHHcCCeeeEEeCCCCc-HHHHHHhh-cccc---EEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCce
Confidence 3345789999999999999999876655 45445444 2111 233444432 2222323333333211111122222
Q ss_pred EEEecCh--hhHHHHHHcCCeEEEEc
Q 022348 259 LVVEDSV--IGLQAATRAGMACVITY 282 (298)
Q Consensus 259 ~~vgD~~--~Di~~a~~aG~~~v~~~ 282 (298)
+=|+-+. ..+..+..||.++++..
T Consensus 172 ievDGGv~~~ti~~~a~AGAN~iVaG 197 (224)
T KOG3111|consen 172 IEVDGGVGPSTIDKAAEAGANMIVAG 197 (224)
T ss_pred EEecCCcCcchHHHHHHcCCCEEEec
Confidence 3344333 69999999999987644
No 311
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=55.64 E-value=25 Score=33.93 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=34.6
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~ 220 (298)
..+...+.|++|+++|++++++|+.....+...++.+ ++.
T Consensus 434 i~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~L-gl~ 473 (694)
T PRK14502 434 SYSTALDALRLLKDKELPLVFCSAKTMGEQDLYRNEL-GIK 473 (694)
T ss_pred cCHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHc-CCC
Confidence 4567788999999999999999999999888888887 664
No 312
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=55.42 E-value=1.3e+02 Score=25.72 Aligned_cols=101 Identities=16% Similarity=0.101 Sum_probs=64.1
Q ss_pred HHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCC-C----CHHHHHHHHHHhCCCCCcE
Q 022348 184 VLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKK-P----DPSIYVTAAKRLGISEKDC 258 (298)
Q Consensus 184 ~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~K-P----~~~~~~~~~~~lgi~~~~~ 258 (298)
+.++|...+++|+-+..+.-.+.+.++.+++-. .-.. -..|+........- + -..+...++++..++-.=+
T Consensus 6 ~k~lL~~A~~~~yAV~AfN~~n~e~~~avi~AA-ee~~---sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~ 81 (286)
T PRK08610 6 MKEMLIDAKENGYAVGQYNLNNLEFTQAILEAS-QEEN---APVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVA 81 (286)
T ss_pred HHHHHHHHHHCCceEEEEEECCHHHHHHHHHHH-HHHC---CCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEE
Confidence 678899999999999988777777787777665 2222 23444433211111 1 1234555556665322346
Q ss_pred EEEec--ChhhHHHHHHcCCeEEEEcCCCchh
Q 022348 259 LVVED--SVIGLQAATRAGMACVITYTSSTAE 288 (298)
Q Consensus 259 ~~vgD--~~~Di~~a~~aG~~~v~~~~~~~~~ 288 (298)
++.+= +..++..|-.+|++.||+.+...+-
T Consensus 82 lHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~ 113 (286)
T PRK08610 82 IHLDHGSSFEKCKEAIDAGFTSVMIDASHSPF 113 (286)
T ss_pred EECCCCCCHHHHHHHHHcCCCEEEEeCCCCCH
Confidence 66653 3467888889999999999876543
No 313
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=54.97 E-value=45 Score=27.58 Aligned_cols=31 Identities=10% Similarity=0.068 Sum_probs=25.2
Q ss_pred CCCCCChhH-HHHHHHHHHCCCeEEEEeCCCh
Q 022348 176 GTVEPRPGV-LRLMDEAKAAGKKVAVCSAATK 206 (298)
Q Consensus 176 ~~~~~~pg~-~~~l~~L~~~g~~i~i~S~~~~ 206 (298)
+...+.++. .++++.+++.|+++.+.||+..
T Consensus 79 GEPll~~~~~~~l~~~~k~~g~~i~l~TNG~~ 110 (246)
T PRK11145 79 GEAILQAEFVRDWFRACKKEGIHTCLDTNGFV 110 (246)
T ss_pred ccHhcCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 334467774 5899999999999999999975
No 314
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=54.71 E-value=7.5 Score=29.92 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=14.6
Q ss_pred CccEEEEecCCccccchh
Q 022348 66 SLQALIFDCDGVIIESEH 83 (298)
Q Consensus 66 ~~k~viFD~DGTL~d~~~ 83 (298)
.-..+++|+|.||+.+..
T Consensus 5 ~kl~LVLDLDeTLihs~~ 22 (156)
T TIGR02250 5 KKLHLVLDLDQTLIHTTK 22 (156)
T ss_pred CceEEEEeCCCCcccccc
Confidence 346799999999998753
No 315
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=54.63 E-value=79 Score=27.32 Aligned_cols=94 Identities=9% Similarity=-0.077 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEe
Q 022348 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVE 262 (298)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vg 262 (298)
...++++.|.+.|+++.++-++..+ . ...+.+... ...+. -.++.+-.-...++... -++||
T Consensus 198 ~~a~li~~l~~~~~~ivl~~G~~~e-~-~~~~~i~~~-----~~~~~-----l~g~~sL~elaali~~a------~l~I~ 259 (322)
T PRK10964 198 HWRELIGLLAPSGLRIKLPWGAEHE-E-QRAKRLAEG-----FPYVE-----VLPKLSLEQVARVLAGA------KAVVS 259 (322)
T ss_pred HHHHHHHHHHHCCCeEEEeCCCHHH-H-HHHHHHHcc-----CCcce-----ecCCCCHHHHHHHHHhC------CEEEe
Confidence 5678888888888876553233222 1 122222111 11111 01333333333333332 26888
Q ss_pred cChhhHHHHHHcCCeEEEEcCCCchhHhhhcC
Q 022348 263 DSVIGLQAATRAGMACVITYTSSTAEQVRIID 294 (298)
Q Consensus 263 D~~~Di~~a~~aG~~~v~~~~~~~~~~~~~~~ 294 (298)
....-+.+|...|.++|.++|+.++..+...+
T Consensus 260 nDSGp~HlA~A~g~p~valfGpt~p~~~~p~~ 291 (322)
T PRK10964 260 VDTGLSHLTAALDRPNITLYGPTDPGLIGGYG 291 (322)
T ss_pred cCCcHHHHHHHhCCCEEEEECCCCcccccCCC
Confidence 88888999999999999999988776654443
No 316
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=54.13 E-value=1.4e+02 Score=25.49 Aligned_cols=98 Identities=19% Similarity=0.167 Sum_probs=61.8
Q ss_pred HHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCC-CCCC---CHHHHHHHHHHhCCCCCcEEE
Q 022348 185 LRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVK-QKKP---DPSIYVTAAKRLGISEKDCLV 260 (298)
Q Consensus 185 ~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~-~~KP---~~~~~~~~~~~lgi~~~~~~~ 260 (298)
.++|..-+++|+-+..+.-.+...++.+++-. .-.+ -..|+...... ...+ -..+...++++..++ =+++
T Consensus 2 k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AA-e~~~---sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VP--V~lH 75 (276)
T cd00947 2 KELLKKAREGGYAVGAFNINNLETLKAILEAA-EETR---SPVILQISEGAIKYAGLELLVAMVKAAAERASVP--VALH 75 (276)
T ss_pred HHHHHHHHHCCceEEEEeeCCHHHHHHHHHHH-HHhC---CCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCC--EEEE
Confidence 57888899999999888877778788777665 2222 23444332211 1112 122344455566554 3566
Q ss_pred Eec--ChhhHHHHHHcCCeEEEEcCCCchh
Q 022348 261 VED--SVIGLQAATRAGMACVITYTSSTAE 288 (298)
Q Consensus 261 vgD--~~~Di~~a~~aG~~~v~~~~~~~~~ 288 (298)
.+= +..++..|..+|+..||+.+...+.
T Consensus 76 LDH~~~~~~i~~ai~~GftSVMiD~S~l~~ 105 (276)
T cd00947 76 LDHGSSFELIKRAIRAGFSSVMIDGSHLPF 105 (276)
T ss_pred CCCCCCHHHHHHHHHhCCCEEEeCCCCCCH
Confidence 653 3468888999999999999876544
No 317
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=53.98 E-value=1.3e+02 Score=25.21 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=54.3
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEE
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCL 259 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~ 259 (298)
+.+...++++.|.++|+++.++.+.........+....+.. ..+. -.++.+..-+..++++.. +
T Consensus 138 ~~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~~~~~-----~~~~-----~~~~~~l~e~~~li~~~~------l 201 (279)
T cd03789 138 PAERFAALADRLLARGARVVLTGGPAERELAEEIAAALGGP-----RVVN-----LAGKTSLRELAALLARAD------L 201 (279)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHhcCCC-----cccc-----CcCCCCHHHHHHHHHhCC------E
Confidence 34567788889988899888776544322222221110101 1111 122333333444444432 4
Q ss_pred EEecChhhHHHHHHcCCeEEEEcCCCchhHhhhc
Q 022348 260 VVEDSVIGLQAATRAGMACVITYTSSTAEQVRII 293 (298)
Q Consensus 260 ~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~~~~~ 293 (298)
+||-...-+.+|...|.+++.+.++..+..+..+
T Consensus 202 ~I~~Dsg~~HlA~a~~~p~i~l~g~~~~~~~~p~ 235 (279)
T cd03789 202 VVTNDSGPMHLAAALGTPTVALFGPTDPARTGPP 235 (279)
T ss_pred EEeeCCHHHHHHHHcCCCEEEEECCCCccccCCC
Confidence 5664345566667899999999998887776443
No 318
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=53.57 E-value=28 Score=24.23 Aligned_cols=44 Identities=11% Similarity=0.096 Sum_probs=35.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccc
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERF 222 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~ 222 (298)
...=|..+.+..++.-.-++.|+..+.+...+..++.+..+...
T Consensus 19 kvilG~k~tiK~lk~gkaKliiiAsN~P~~~k~~ieyYAkLs~i 62 (100)
T COG1911 19 KVILGSKRTIKSLKLGKAKLIIIASNCPKELKEDIEYYAKLSDI 62 (100)
T ss_pred CEEEehHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHcCC
Confidence 34558999999999988999999888888888888887555543
No 319
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=53.03 E-value=33 Score=30.79 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHhCCCCCcEEEEecChhhH----HHHHHcCCeEEEEcC-CCc
Q 022348 240 DPSIYVTAAKRLGISEKDCLVVEDSVIGL----QAATRAGMACVITYT-SST 286 (298)
Q Consensus 240 ~~~~~~~~~~~lgi~~~~~~~vgD~~~Di----~~a~~aG~~~v~~~~-~~~ 286 (298)
..+-...+++++|--.+-++||||+..|+ +++...|....++.| +.+
T Consensus 207 E~~~Va~~Akk~gkGveaI~~vGDGyddLI~G~~a~id~~vDvfVvEGgPFN 258 (505)
T PF10113_consen 207 EMEEVAELAKKYGKGVEAIMHVGDGYDDLITGLKACIDMGVDVFVVEGGPFN 258 (505)
T ss_pred HHHHHHHHHHHhCCCceEEEEecCChHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 34456677889988889999999999765 556667888776655 444
No 320
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=52.83 E-value=39 Score=26.91 Aligned_cols=82 Identities=13% Similarity=0.119 Sum_probs=51.8
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCC-----------CCCCCCCHHHHHH
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDD-----------VKQKKPDPSIYVT 246 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~-----------~~~~KP~~~~~~~ 246 (298)
.....|+..+|+.||+-++.+--.+..... +..-+...+++. +|+|+.+|. ....|+.|..++.
T Consensus 28 ~~y~~GAd~Ll~~Lr~g~~dv~yMpAH~~q--~~FPqtme~L~~---YDaivlSDiGsNt~LL~~~t~~~~k~~Pn~L~l 102 (254)
T COG5426 28 VTYHEGADPLLKALRGGEYDVTYMPAHDAQ--EKFPQTMEGLDA---YDAIVLSDIGSNTLLLQPATWYHSKIVPNRLKL 102 (254)
T ss_pred eecccCchHHHHHHhCCCcceEEechHHHH--Hhcchhhhhhcc---cceEEEeecCCceeeccccceeecccCccHHHH
Confidence 345679999999999999988777654332 222222334554 599988864 2356888888777
Q ss_pred HHHHhCCCCCcEEEEecCh
Q 022348 247 AAKRLGISEKDCLVVEDSV 265 (298)
Q Consensus 247 ~~~~lgi~~~~~~~vgD~~ 265 (298)
+.+..+ .-.-.+|||-..
T Consensus 103 ikdyV~-~GGGLLMiGGY~ 120 (254)
T COG5426 103 IKDYVE-NGGGLLMIGGYL 120 (254)
T ss_pred HHHHHh-cCCcEEEEccEE
Confidence 765432 223456666544
No 321
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=52.23 E-value=18 Score=21.25 Aligned_cols=32 Identities=22% Similarity=0.102 Sum_probs=26.7
Q ss_pred HHHHHHHHHCCCeEEEEeCCChhhHHHHHHHH
Q 022348 185 LRLMDEAKAAGKKVAVCSAATKSSVILCLENL 216 (298)
Q Consensus 185 ~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~ 216 (298)
.++..+|++.|++.+=+|..++...+..|..+
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~~~ 40 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRKLYEKKLRKL 40 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHHHHHHHHHHH
Confidence 47788999999999999999888777777655
No 322
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=52.20 E-value=11 Score=33.45 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=17.5
Q ss_pred CCcCCccEEEEecCCccccch
Q 022348 62 ASSQSLQALIFDCDGVIIESE 82 (298)
Q Consensus 62 ~~~~~~k~viFD~DGTL~d~~ 82 (298)
-...++.+|.||||+||....
T Consensus 22 l~l~~i~~~GfdmDyTL~~Y~ 42 (424)
T KOG2469|consen 22 LNLENIGIVGFDMDYTLARYN 42 (424)
T ss_pred hhhhcCcEEeeccccchhhhc
Confidence 345689999999999998764
No 323
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=51.95 E-value=1.3e+02 Score=27.18 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=50.7
Q ss_pred EEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecCh--hhHHHHHHcCC
Q 022348 199 AVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSV--IGLQAATRAGM 276 (298)
Q Consensus 199 ~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~--~Di~~a~~aG~ 276 (298)
+|--|.+.. +.+.|..+ |.. ||+. .|- =..++..+|++|++++|.+--. .+|+-|...|+
T Consensus 85 AVKCN~dp~-vl~~La~l-G~g----fdca--------Sk~----E~~lvl~~gv~P~riIyanpcK~~s~IkyAa~~gV 146 (448)
T KOG0622|consen 85 AVKCNSDPK-VLRLLASL-GCG----FDCA--------SKN----ELDLVLSLGVSPERIIYANPCKQVSQIKYAAKHGV 146 (448)
T ss_pred eEEeCCCHH-HHHHHHHc-Ccc----ceec--------ChH----HHHHHHhcCCChHHeEecCCCccHHHHHHHHHcCC
Confidence 444455554 55667666 543 5543 231 1234457899999999998765 69999999999
Q ss_pred eEEEEcCCCchhHhhhcCCC
Q 022348 277 ACVITYTSSTAEQVRIIDPC 296 (298)
Q Consensus 277 ~~v~~~~~~~~~~~~~~~~~ 296 (298)
......+......++...|+
T Consensus 147 ~~~tfDne~el~kv~~~hP~ 166 (448)
T KOG0622|consen 147 SVMTFDNEEELEKVAKSHPN 166 (448)
T ss_pred eEEeecCHHHHHHHHHhCCC
Confidence 86555555445555555554
No 324
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=51.94 E-value=1.6e+02 Score=25.67 Aligned_cols=102 Identities=15% Similarity=0.077 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCC--CCCCCC-----CHHHHHHHHHHhCCCC
Q 022348 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDD--VKQKKP-----DPSIYVTAAKRLGISE 255 (298)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~--~~~~KP-----~~~~~~~~~~~lgi~~ 255 (298)
-+.++|...++.|+-+..+.-.+.+.++.+++-. .-..- ..|+.... ...... -...+...+++.+++-
T Consensus 11 ~~k~lL~~A~~~~yAV~AfN~~n~e~~~avi~AA-ee~~s---PvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~V 86 (321)
T PRK07084 11 NTREMFAKAVKGGYAIPAYNFNNMEQLQAIIQAC-VETKS---PVILQVSKGARKYANATLLRYMAQGAVEYAKELGCPI 86 (321)
T ss_pred CHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHH-HHhCC---CEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCCC
Confidence 4788999999999999998888888888887766 22221 33433321 111111 1112344455554333
Q ss_pred CcEEEEe--cChhhHHHHHHcCCeEEEEcCCCchh
Q 022348 256 KDCLVVE--DSVIGLQAATRAGMACVITYTSSTAE 288 (298)
Q Consensus 256 ~~~~~vg--D~~~Di~~a~~aG~~~v~~~~~~~~~ 288 (298)
.=+++.+ ++...+..|-.+|+..|++.+...+-
T Consensus 87 PV~lHLDHg~~~e~i~~ai~~GftSVMiD~S~lp~ 121 (321)
T PRK07084 87 PIVLHLDHGDSFELCKDCIDSGFSSVMIDGSHLPY 121 (321)
T ss_pred cEEEECCCCCCHHHHHHHHHcCCCEEEeeCCCCCH
Confidence 3456665 34568888899999999999876543
No 325
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=51.91 E-value=1.5e+02 Score=25.36 Aligned_cols=99 Identities=17% Similarity=0.148 Sum_probs=64.2
Q ss_pred HHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCC-CC---CHHHHHHHHHHhCCCCCcEE
Q 022348 184 VLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQK-KP---DPSIYVTAAKRLGISEKDCL 259 (298)
Q Consensus 184 ~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~-KP---~~~~~~~~~~~lgi~~~~~~ 259 (298)
+.++|...+++|+-+..+.-.+.+.++.+++-. .-.. -..|+...+.... -+ -..+...++++.+++ =++
T Consensus 6 ~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AA-ee~~---sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VP--Val 79 (286)
T PRK12738 6 TKYLLQDAQANGYAVPAFNIHNAETIQAILEVC-SEMR---SPVILAGTPGTFKHIALEEIYALCSAYSTTYNMP--LAL 79 (286)
T ss_pred HHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHH-HHHC---CCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCC--EEE
Confidence 678899999999999888888888888877765 2222 1344433221111 11 123455556777764 356
Q ss_pred EEe--cChhhHHHHHHcCCeEEEEcCCCchh
Q 022348 260 VVE--DSVIGLQAATRAGMACVITYTSSTAE 288 (298)
Q Consensus 260 ~vg--D~~~Di~~a~~aG~~~v~~~~~~~~~ 288 (298)
+.+ .+...+..|-.+|++.||+.+...+-
T Consensus 80 HLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~ 110 (286)
T PRK12738 80 HLDHHESLDDIRRKVHAGVRSAMIDGSHFPF 110 (286)
T ss_pred ECCCCCCHHHHHHHHHcCCCeEeecCCCCCH
Confidence 665 33457788888999999999876543
No 326
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=51.74 E-value=40 Score=28.86 Aligned_cols=55 Identities=29% Similarity=0.292 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHH------HcCCeEE-EEcCCCchhH
Q 022348 235 KQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAAT------RAGMACV-ITYTSSTAEQ 289 (298)
Q Consensus 235 ~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~------~aG~~~v-~~~~~~~~~~ 289 (298)
...-|+++.|..++.++||..+.+++|=|..+..-+++ -.|+.-| +++|+.....
T Consensus 69 ~~~lp~~e~fa~~~~~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~ 130 (285)
T COG2897 69 PHMLPSPEQFAKLLGELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWK 130 (285)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHH
Confidence 46679999999999999999877777766666666554 4799977 6777655443
No 327
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=51.03 E-value=1.4e+02 Score=24.72 Aligned_cols=95 Identities=13% Similarity=0.018 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCChh--hHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEE
Q 022348 182 PGVLRLMDEAKAAGKKVAVCSAATKS--SVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCL 259 (298)
Q Consensus 182 pg~~~~l~~L~~~g~~i~i~S~~~~~--~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~ 259 (298)
+...++++.+++.|++.+++-|.... .++.+++.. +. |= +++.....-.+-.+...+.+.+--...++..+
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~---~~---~l-~msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i 188 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLS---PL---FI-YYGLRPATGVPLPVSVERNIKRVRNLVGNKYL 188 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC---CC---EE-EEEeCCCCCCCchHHHHHHHHHHHHhcCCCCE
Confidence 57778999999999999988777553 333344322 11 11 11221111112222333232221122223347
Q ss_pred EEecCh---hhHHHHHHcCCeEEEEcC
Q 022348 260 VVEDSV---IGLQAATRAGMACVITYT 283 (298)
Q Consensus 260 ~vgD~~---~Di~~a~~aG~~~v~~~~ 283 (298)
.+|=+. .|+..+..+|...+++.+
T Consensus 189 ~v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 189 VVGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred EEeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 788766 588888899999876654
No 328
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=50.68 E-value=19 Score=32.93 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=13.5
Q ss_pred cCCccEEEEecCCccccchh
Q 022348 64 SQSLQALIFDCDGVIIESEH 83 (298)
Q Consensus 64 ~~~~k~viFD~DGTL~d~~~ 83 (298)
+.++++|-||||-||+....
T Consensus 9 l~~i~~iGFDmDyTLa~Y~~ 28 (448)
T PF05761_consen 9 LKDIDVIGFDMDYTLARYKS 28 (448)
T ss_dssp CCC--EEEE-TBTTTBEE-C
T ss_pred cccCCEEEECcccchhhcCH
Confidence 45899999999999987653
No 329
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=50.60 E-value=77 Score=26.58 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=7.6
Q ss_pred HHHHHhCCCCCcEEEEecC
Q 022348 246 TAAKRLGISEKDCLVVEDS 264 (298)
Q Consensus 246 ~~~~~lgi~~~~~~~vgD~ 264 (298)
.++++..-.-.++++||=+
T Consensus 152 ~i~~~I~~s~pdil~VgmG 170 (253)
T COG1922 152 AIVERIAASGPDILLVGMG 170 (253)
T ss_pred HHHHHHHhcCCCEEEEeCC
Confidence 3333333333344444433
No 330
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=50.59 E-value=72 Score=25.94 Aligned_cols=77 Identities=25% Similarity=0.233 Sum_probs=47.9
Q ss_pred CCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEe---cChhhHHHH
Q 022348 195 GKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVE---DSVIGLQAA 271 (298)
Q Consensus 195 g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vg---D~~~Di~~a 271 (298)
|.+++|+..+++.+.. +..+ .... |+. +.-.--|-+.-++.++.++|++-+++.++. ...+++...
T Consensus 68 g~~v~VLasGDP~f~G--~g~~-l~~~---~~~-----~~v~iIPgiSS~q~a~ARlg~~~~~~~~islHgr~~~~l~~~ 136 (210)
T COG2241 68 GRDVVVLASGDPLFSG--VGRL-LRRK---FSC-----EEVEIIPGISSVQLAAARLGWPLQDTEVISLHGRPVELLRPL 136 (210)
T ss_pred CCCeEEEecCCcchhh--hHHH-HHHh---cCc-----cceEEecChhHHHHHHHHhCCChHHeEEEEecCCCHHHHHHH
Confidence 7889999999886443 1111 1111 111 111234778899999999999988877765 444566666
Q ss_pred HHcCCeEEEEc
Q 022348 272 TRAGMACVITY 282 (298)
Q Consensus 272 ~~aG~~~v~~~ 282 (298)
..-|-..++..
T Consensus 137 ~~~~~~~vil~ 147 (210)
T COG2241 137 LENGRRLVILT 147 (210)
T ss_pred HhCCceEEEeC
Confidence 65666655443
No 331
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=50.54 E-value=1.4e+02 Score=24.36 Aligned_cols=88 Identities=14% Similarity=0.161 Sum_probs=42.5
Q ss_pred HHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCC-HHHHHHHHHHhCCCCCcEEEEec--
Q 022348 187 LMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPD-PSIYVTAAKRLGISEKDCLVVED-- 263 (298)
Q Consensus 187 ~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~-~~~~~~~~~~lgi~~~~~~~vgD-- 263 (298)
+++.|.+.++ +.|+.+.+.+......+.+. -..+..++..+.. |. .+.++.+.++++-.|+=++=.|-
T Consensus 6 ~~~~l~~~~v-i~vir~~~~~~a~~~~~al~-~~Gi~~iEit~~~-------~~a~~~i~~l~~~~~~~p~~~vGaGTV~ 76 (213)
T PRK06552 6 ILTKLKANGV-VAVVRGESKEEALKISLAVI-KGGIKAIEVTYTN-------PFASEVIKELVELYKDDPEVLIGAGTVL 76 (213)
T ss_pred HHHHHHHCCE-EEEEECCCHHHHHHHHHHHH-HCCCCEEEEECCC-------ccHHHHHHHHHHHcCCCCCeEEeeeeCC
Confidence 4556666654 66777777666666665551 1111112322211 11 23455555554432332222232
Q ss_pred ChhhHHHHHHcCCeEEEEcC
Q 022348 264 SVIGLQAATRAGMACVITYT 283 (298)
Q Consensus 264 ~~~Di~~a~~aG~~~v~~~~ 283 (298)
+..+++.+..+|.++++.++
T Consensus 77 ~~~~~~~a~~aGA~FivsP~ 96 (213)
T PRK06552 77 DAVTARLAILAGAQFIVSPS 96 (213)
T ss_pred CHHHHHHHHHcCCCEEECCC
Confidence 12467777777777765443
No 332
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=50.09 E-value=1.7e+02 Score=25.16 Aligned_cols=99 Identities=15% Similarity=0.136 Sum_probs=63.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCC--C-C-CCCHHHHHHHHHHhCCCCCcEE
Q 022348 184 VLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVK--Q-K-KPDPSIYVTAAKRLGISEKDCL 259 (298)
Q Consensus 184 ~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~--~-~-KP~~~~~~~~~~~lgi~~~~~~ 259 (298)
+.++|+..++.|+-+..+.-.+.+.++.+++-. .-.. -..|+...... . + ..-..+...++++..++ =++
T Consensus 6 ~k~il~~A~~~~yaV~AfN~~n~e~~~avi~AA-ee~~---sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VP--V~l 79 (284)
T PRK09195 6 TKQMLNNAQRGGYAVPAFNIHNLETMQVVVETA-AELH---SPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHP--LAL 79 (284)
T ss_pred HHHHHHHHHHcCceEEEEEeCCHHHHHHHHHHH-HHhC---CCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCC--EEE
Confidence 678899999999999888878888888777765 2222 13344332211 1 1 11123455566676664 366
Q ss_pred EEec--ChhhHHHHHHcCCeEEEEcCCCchh
Q 022348 260 VVED--SVIGLQAATRAGMACVITYTSSTAE 288 (298)
Q Consensus 260 ~vgD--~~~Di~~a~~aG~~~v~~~~~~~~~ 288 (298)
+.+= +...+..|-.+|++.|++.+...+-
T Consensus 80 HLDHg~~~e~i~~Ai~~GftSVM~DgS~l~~ 110 (284)
T PRK09195 80 HLDHHEKFDDIAQKVRSGVRSVMIDGSHLPF 110 (284)
T ss_pred ECCCCCCHHHHHHHHHcCCCEEEeCCCCCCH
Confidence 6653 3468888899999999999876543
No 333
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=49.95 E-value=34 Score=27.94 Aligned_cols=32 Identities=3% Similarity=-0.106 Sum_probs=23.5
Q ss_pred CCcEEEEecCh----hhHHHHHHcCCeEEEEcCCCc
Q 022348 255 EKDCLVVEDSV----IGLQAATRAGMACVITYTSST 286 (298)
Q Consensus 255 ~~~~~~vgD~~----~Di~~a~~aG~~~v~~~~~~~ 286 (298)
.++++||||.. ||.+.....|..++-|.++..
T Consensus 175 ~~~I~FfGDkt~pGGNDyei~~~~rt~g~~V~~p~D 210 (220)
T PF03332_consen 175 FDEIHFFGDKTFPGGNDYEIFEDPRTIGHTVTSPED 210 (220)
T ss_dssp -SEEEEEESS-STTSTTHHHHHSTTSEEEE-SSHHH
T ss_pred cceEEEEehhccCCCCCceeeecCCccEEEeCCHHH
Confidence 47899999976 899998888888776766543
No 334
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=49.26 E-value=1.9e+02 Score=25.62 Aligned_cols=103 Identities=18% Similarity=0.210 Sum_probs=67.7
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChh-----hHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHh-CC
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKS-----SVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRL-GI 253 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~-----~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l-gi 253 (298)
..+++.+.++.++++|.++++++|.... .+...+..+.. .+.|.++.+| |..+..+.+.. ++
T Consensus 47 s~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e----~GvDaviv~D--------pg~i~l~~e~~p~l 114 (347)
T COG0826 47 SVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVE----LGVDAVIVAD--------PGLIMLARERGPDL 114 (347)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHH----cCCCEEEEcC--------HHHHHHHHHhCCCC
Confidence 4456889999999999999999986522 22344444422 2368888765 44555554432 23
Q ss_pred CC-CcEEEEecChhhHHHHHHcCCeEEEEcCCCchhHhhhcC
Q 022348 254 SE-KDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQVRIID 294 (298)
Q Consensus 254 ~~-~~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~~~~~~~~~ 294 (298)
+. -.+-+--.+...++-.++.|+.-+++....+.++++++.
T Consensus 115 ~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~ 156 (347)
T COG0826 115 PIHVSTQANVTNAETAKFWKELGAKRVVLPRELSLEEIKEIK 156 (347)
T ss_pred cEEEeeeEecCCHHHHHHHHHcCCEEEEeCccCCHHHHHHHH
Confidence 32 122333366778888999998888888888888777654
No 335
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=48.89 E-value=41 Score=27.57 Aligned_cols=33 Identities=9% Similarity=0.148 Sum_probs=27.4
Q ss_pred HHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc
Q 022348 186 RLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (298)
Q Consensus 186 ~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~ 220 (298)
+.++ ++++|++++++|+.....+...++.+ ++.
T Consensus 22 ~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l-~l~ 54 (236)
T TIGR02471 22 ELLR-GSGDAVGFGIATGRSVESAKSRYAKL-NLP 54 (236)
T ss_pred HHHH-hcCCCceEEEEeCCCHHHHHHHHHhC-CCC
Confidence 4455 57889999999999999999999887 664
No 336
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=47.75 E-value=1.1e+02 Score=22.27 Aligned_cols=91 Identities=12% Similarity=-0.008 Sum_probs=48.9
Q ss_pred HHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEe-cCh
Q 022348 187 LMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVE-DSV 265 (298)
Q Consensus 187 ~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vg-D~~ 265 (298)
+...|+.+|+++.-+-...+ .+..++..... +.|.+..|.......+...-+...+++.|.. .-.+++| ..+
T Consensus 19 ~~~~l~~~G~~vi~lG~~vp--~e~~~~~a~~~----~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~-~i~i~~GG~~~ 91 (122)
T cd02071 19 IARALRDAGFEVIYTGLRQT--PEEIVEAAIQE----DVDVIGLSSLSGGHMTLFPEVIELLRELGAG-DILVVGGGIIP 91 (122)
T ss_pred HHHHHHHCCCEEEECCCCCC--HHHHHHHHHHc----CCCEEEEcccchhhHHHHHHHHHHHHhcCCC-CCEEEEECCCC
Confidence 33458888888776654433 23444433111 1466666655444444433334444444443 3346666 333
Q ss_pred -hhHHHHHHcCCeEEEEcCC
Q 022348 266 -IGLQAATRAGMACVITYTS 284 (298)
Q Consensus 266 -~Di~~a~~aG~~~v~~~~~ 284 (298)
.+.+.++++|+..+...+.
T Consensus 92 ~~~~~~~~~~G~d~~~~~~~ 111 (122)
T cd02071 92 PEDYELLKEMGVAEIFGPGT 111 (122)
T ss_pred HHHHHHHHHCCCCEEECCCC
Confidence 4677888999886544433
No 337
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=47.73 E-value=80 Score=32.81 Aligned_cols=91 Identities=16% Similarity=0.246 Sum_probs=59.4
Q ss_pred HHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecC
Q 022348 185 LRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDS 264 (298)
Q Consensus 185 ~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~ 264 (298)
.-+|++|+..|+++.|+|.-.. +..+|+.++....|. .+--| +...-+-=+.+++++|.++.=.+||=-+
T Consensus 1266 AiLLqQLk~eghRvLIfTQMtk--mLDVLeqFLnyHgyl----Y~RLD----g~t~vEqRQaLmerFNaD~RIfcfILST 1335 (1958)
T KOG0391|consen 1266 AILLQQLKSEGHRVLIFTQMTK--MLDVLEQFLNYHGYL----YVRLD----GNTSVEQRQALMERFNADRRIFCFILST 1335 (1958)
T ss_pred HHHHHHHHhcCceEEehhHHHH--HHHHHHHHHhhcceE----EEEec----CCccHHHHHHHHHHhcCCCceEEEEEec
Confidence 4578999999999999985432 455666654444331 11111 1223445567888888888777777777
Q ss_pred hhhHHHHHHcCCeEEEEcCCC
Q 022348 265 VIGLQAATRAGMACVITYTSS 285 (298)
Q Consensus 265 ~~Di~~a~~aG~~~v~~~~~~ 285 (298)
.+.-.+..-.|..+|+.++..
T Consensus 1336 rSggvGiNLtgADTVvFYDsD 1356 (1958)
T KOG0391|consen 1336 RSGGVGINLTGADTVVFYDSD 1356 (1958)
T ss_pred cCCccccccccCceEEEecCC
Confidence 777777777788888766543
No 338
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=47.52 E-value=1.2e+02 Score=25.21 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=42.1
Q ss_pred HHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecCh
Q 022348 186 RLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSV 265 (298)
Q Consensus 186 ~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~ 265 (298)
++++...++|.+++++ ++....++...+.+ .-. | +.+.+ +...|... ++-.+.++++.+-...++++||=+.
T Consensus 96 ~ll~~~~~~~~~v~ll-G~~~~v~~~a~~~l-~~~-y-~l~i~--g~~~Gyf~--~~e~~~i~~~I~~s~~dil~VglG~ 167 (243)
T PRK03692 96 ALMARAGKEGTPVFLV-GGKPEVLAQTEAKL-RTQ-W-NVNIV--GSQDGYFT--PEQRQALFERIHASGAKIVTVAMGS 167 (243)
T ss_pred HHHHHHHhcCCeEEEE-CCCHHHHHHHHHHH-HHH-h-CCEEE--EEeCCCCC--HHHHHHHHHHHHhcCCCEEEEECCC
Confidence 4455556677888888 55555555555554 221 2 22322 22223333 3334556677776667788888553
Q ss_pred --hhHHHHH
Q 022348 266 --IGLQAAT 272 (298)
Q Consensus 266 --~Di~~a~ 272 (298)
.+.-+.+
T Consensus 168 PkQE~~~~~ 176 (243)
T PRK03692 168 PKQEIFMRD 176 (243)
T ss_pred cHHHHHHHH
Confidence 2444443
No 339
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=46.47 E-value=36 Score=24.56 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=24.8
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhH
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSV 209 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~ 209 (298)
-.+++.+.++.++++|.++..+|++....+
T Consensus 58 ~t~e~~~~~~~a~~~g~~vi~iT~~~~s~l 87 (126)
T cd05008 58 ETADTLAALRLAKEKGAKTVAITNVVGSTL 87 (126)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEECCCCChH
Confidence 446789999999999999999999865433
No 340
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=46.34 E-value=31 Score=25.01 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=25.6
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhH
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSV 209 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~ 209 (298)
-.+.+.+.++.+|++|.++..+|+.....+
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~l 88 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNPNSTL 88 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCCch
Confidence 557889999999999999999999876544
No 341
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=46.30 E-value=2.2e+02 Score=26.93 Aligned_cols=99 Identities=14% Similarity=0.069 Sum_probs=49.5
Q ss_pred hhHHHHH-HHHHHCCCeEEEEeCCChhhH-HHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHH---HHhCCCC-
Q 022348 182 PGVLRLM-DEAKAAGKKVAVCSAATKSSV-ILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAA---KRLGISE- 255 (298)
Q Consensus 182 pg~~~~l-~~L~~~g~~i~i~S~~~~~~~-~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~---~~lgi~~- 255 (298)
+|+.+-+ +.+++.|.+++++++...... ..+.+.+ .-..+..++.++...+ ..|+ -+....++ .+.+.+.
T Consensus 195 ~g~l~~l~~~l~~~g~k~~iV~d~~v~~~~~~l~~~L-~~~g~~v~~~v~p~~E--~~ks-l~~v~~~~~~l~~~~~~r~ 270 (542)
T PRK14021 195 EGAMNHLPQVLGPKPVKVALIHTQPVQRHSDRARTLL-RQGGYEVSDIVIPDAE--AGKT-IEVANGIWQRLGNEGFTRS 270 (542)
T ss_pred CChHHHHHHHHHhcCCeEEEEECccHHHHHHHHHHHH-HhCCCceEEEEeCCCc--ccCC-HHHHHHHHHHHHhcCCCCC
Confidence 4554443 445666777777776543221 1222222 1111111333332221 1132 23333332 3445543
Q ss_pred CcEEEEecCh-hhHHHHHH----cCCeEEEEcCC
Q 022348 256 KDCLVVEDSV-IGLQAATR----AGMACVITYTS 284 (298)
Q Consensus 256 ~~~~~vgD~~-~Di~~a~~----aG~~~v~~~~~ 284 (298)
+-++.||-+. .|+..+.+ .|++.|.+++.
T Consensus 271 D~IIAIGGGsv~D~AKfvA~~y~rGi~~i~vPTT 304 (542)
T PRK14021 271 DAIVGLGGGAATDLAGFVAATWMRGIRYVNCPTS 304 (542)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHcCCCEEEeCCh
Confidence 4466699877 59988877 49999887763
No 342
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=46.27 E-value=1.8e+02 Score=24.45 Aligned_cols=95 Identities=15% Similarity=0.184 Sum_probs=53.4
Q ss_pred HHHHHHCCCeEEEEeCCChhhHH-----HHHHHHhCCccccCcceEEeCCCC------CCCCCCHHHHHHHHHHhCCCCC
Q 022348 188 MDEAKAAGKKVAVCSAATKSSVI-----LCLENLIGMERFEGLDCFLAGDDV------KQKKPDPSIYVTAAKRLGISEK 256 (298)
Q Consensus 188 l~~L~~~g~~i~i~S~~~~~~~~-----~~l~~~~~l~~~~~fd~v~~~~~~------~~~KP~~~~~~~~~~~lgi~~~ 256 (298)
.+.|+ +|-+++++-++....+. +....+ +.+. ..+..++.+.+. ....-+++.....+...++.++
T Consensus 43 ~~~l~-~ggrl~~~GaGtSg~la~~da~e~~~tf-g~~~-~~v~~~iagg~~a~~~a~~~~edd~~~~~~~l~a~~l~~~ 119 (257)
T cd05007 43 AERLR-AGGRLIYVGAGTSGRLGVLDASELPPTF-GTPP-ERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQAINLTER 119 (257)
T ss_pred HHHHH-cCCEEEEEcCcHHHHHHHHHHHhccccc-cCCc-ccceEEEeCCHHHHHhhccccCChHHHHHHHHHHcCCCCC
Confidence 34454 45678888777654332 223233 4322 113445544432 2334456677777778888887
Q ss_pred cEEEE----ecCh---hhHHHHHHcCCeEEEEcCCC
Q 022348 257 DCLVV----EDSV---IGLQAATRAGMACVITYTSS 285 (298)
Q Consensus 257 ~~~~v----gD~~---~Di~~a~~aG~~~v~~~~~~ 285 (298)
+++++ |.++ .=++.|++.|+.++.+.+..
T Consensus 120 DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~ 155 (257)
T cd05007 120 DVVIGIAASGRTPYVLGALRYARARGALTIGIACNP 155 (257)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCC
Confidence 76643 2333 35667888999998665543
No 343
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=45.80 E-value=1.6e+02 Score=24.90 Aligned_cols=86 Identities=15% Similarity=0.163 Sum_probs=44.1
Q ss_pred HHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCC---------
Q 022348 185 LRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISE--------- 255 (298)
Q Consensus 185 ~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~--------- 255 (298)
.++.+.++++|+.|..+.-.... -...+.+-.++- .+--++++.--.+..+-....+...++++|++.
T Consensus 41 ~~lve~l~~~gv~V~ll~~~~~~-Pd~VFt~D~~~v--~~~~avl~r~~~p~R~gE~~~~~~~~~~lgi~i~~~~~~~~~ 117 (267)
T COG1834 41 EALVEALEKNGVEVHLLPPIEGL-PDQVFTRDPGLV--TGEGAVLARMGAPERRGEEEAIKETLESLGIPIYPRVEAGVF 117 (267)
T ss_pred HHHHHHHHHCCCEEEEcCcccCC-CcceEeccceeE--ecccEEEeccCChhhccCHHHHHHHHHHcCCcccccccCCCc
Confidence 45667788899999888721110 000000000000 000112222122344556678899999988851
Q ss_pred ----------CcEEEEecCh-hhHHHHHH
Q 022348 256 ----------KDCLVVEDSV-IGLQAATR 273 (298)
Q Consensus 256 ----------~~~~~vgD~~-~Di~~a~~ 273 (298)
.+++++|.+. .|.++++.
T Consensus 118 eG~GD~l~~~~~~v~iG~s~RTn~egi~~ 146 (267)
T COG1834 118 EGAGDVLMDGGDTVYIGYSFRTNLEGIEQ 146 (267)
T ss_pred cccccEEEeCCcEEEEEeccccchHHHHH
Confidence 3466777777 47777655
No 344
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=45.33 E-value=18 Score=24.14 Aligned_cols=19 Identities=26% Similarity=0.693 Sum_probs=15.3
Q ss_pred ccEEEEecCCccccchhHH
Q 022348 67 LQALIFDCDGVIIESEHLH 85 (298)
Q Consensus 67 ~k~viFD~DGTL~d~~~~~ 85 (298)
.-.++.+-|||.+|++..+
T Consensus 40 ~~~lvL~eDGT~Vd~EeyF 58 (78)
T cd06539 40 LVTLVLEEDGTVVDTEEFF 58 (78)
T ss_pred CcEEEEeCCCCEEccHHHH
Confidence 4578999999999887543
No 345
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=45.19 E-value=2.1e+02 Score=24.89 Aligned_cols=98 Identities=16% Similarity=0.129 Sum_probs=62.8
Q ss_pred HHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCC-CC---CHHHHHHHHHHhC-CCCCcE
Q 022348 184 VLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQK-KP---DPSIYVTAAKRLG-ISEKDC 258 (298)
Q Consensus 184 ~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~-KP---~~~~~~~~~~~lg-i~~~~~ 258 (298)
+.++|...++.|+-+..+.-.+.+.++.+++-. .-.+ -..|+........ -+ -..+...++++.. ++ =+
T Consensus 5 ~k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AA-e~~~---sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VP--Va 78 (307)
T PRK05835 5 GNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAG-NEEN---SPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIP--VA 78 (307)
T ss_pred HHHHHHHHHHCCceEEEEEECCHHHHHHHHHHH-HHHC---CCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCe--EE
Confidence 678899999999999999888888888887765 2222 1344443321111 11 1123444445553 43 36
Q ss_pred EEEec--ChhhHHHHHHcCCeEEEEcCCCch
Q 022348 259 LVVED--SVIGLQAATRAGMACVITYTSSTA 287 (298)
Q Consensus 259 ~~vgD--~~~Di~~a~~aG~~~v~~~~~~~~ 287 (298)
++.+= +...+..|-.+|+..||+.+...+
T Consensus 79 lHLDHg~~~e~i~~ai~~GftSVM~DgS~l~ 109 (307)
T PRK05835 79 LHLDHGTTFESCEKAVKAGFTSVMIDASHHA 109 (307)
T ss_pred EECCCCCCHHHHHHHHHcCCCEEEEeCCCCC
Confidence 66653 346888888999999999988654
No 346
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=45.05 E-value=2.1e+02 Score=24.82 Aligned_cols=90 Identities=13% Similarity=0.008 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCChh-hHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEE
Q 022348 183 GVLRLMDEAKAAGKKVAVCSAATKS-SVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVV 261 (298)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~S~~~~~-~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~v 261 (298)
...++++.|.+.|+++.++.+.... ....+.+.. + ..++ + -.++.+-.-+..++++.. ++|
T Consensus 195 ~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~-~-------~~~~---~-l~g~~sL~el~ali~~a~------l~I 256 (334)
T TIGR02195 195 HYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALL-P-------GELR---N-LAGETSLDEAVDLIALAK------AVV 256 (334)
T ss_pred HHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhC-C-------cccc---c-CCCCCCHHHHHHHHHhCC------EEE
Confidence 5678888888888877665433221 122222111 1 1111 1 123444334444444432 688
Q ss_pred ecChhhHHHHHHcCCeEEEEcCCCchhHh
Q 022348 262 EDSVIGLQAATRAGMACVITYTSSTAEQV 290 (298)
Q Consensus 262 gD~~~Di~~a~~aG~~~v~~~~~~~~~~~ 290 (298)
|..-.-+.+|.+.|.++|.+.|+.++..+
T Consensus 257 ~~DSGp~HlAaA~~~P~i~lfG~t~p~~~ 285 (334)
T TIGR02195 257 TNDSGLMHVAAALNRPLVALYGSTSPDFT 285 (334)
T ss_pred eeCCHHHHHHHHcCCCEEEEECCCChhhc
Confidence 87777888999999999999998877654
No 347
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=44.60 E-value=19 Score=24.24 Aligned_cols=19 Identities=26% Similarity=0.597 Sum_probs=15.3
Q ss_pred ccEEEEecCCccccchhHH
Q 022348 67 LQALIFDCDGVIIESEHLH 85 (298)
Q Consensus 67 ~k~viFD~DGTL~d~~~~~ 85 (298)
.-.++.+-|||.+|++..+
T Consensus 39 ~~~lvLeeDGT~Vd~EeyF 57 (81)
T cd06537 39 VLTLVLEEDGTAVDSEDFF 57 (81)
T ss_pred ceEEEEecCCCEEccHHHH
Confidence 3679999999999887543
No 348
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=44.26 E-value=51 Score=29.35 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=26.5
Q ss_pred CCCCCChhHHHHHHHHHHCCCeEEEEeCCCh
Q 022348 176 GTVEPRPGVLRLMDEAKAAGKKVAVCSAATK 206 (298)
Q Consensus 176 ~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~ 206 (298)
+...+.|++.++++.+++.|+.+.+.||+..
T Consensus 71 GEPll~~~~~~il~~~~~~g~~~~i~TNG~l 101 (378)
T PRK05301 71 GEPLLRKDLEELVAHARELGLYTNLITSGVG 101 (378)
T ss_pred CccCCchhHHHHHHHHHHcCCcEEEECCCcc
Confidence 4456788999999999999999999999864
No 349
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=44.16 E-value=1.6e+02 Score=23.21 Aligned_cols=30 Identities=10% Similarity=0.020 Sum_probs=14.9
Q ss_pred HHHHHHHHCCCeEEEEeCCChhhHHHHHHHH
Q 022348 186 RLMDEAKAAGKKVAVCSAATKSSVILCLENL 216 (298)
Q Consensus 186 ~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~ 216 (298)
++++...++|.+++++ ++....+....+.+
T Consensus 39 ~l~~~~~~~~~~vfll-G~~~~v~~~~~~~l 68 (177)
T TIGR00696 39 ELCQRAGKEKLPIFLY-GGKPDVLQQLKVKL 68 (177)
T ss_pred HHHHHHHHcCCeEEEE-CCCHHHHHHHHHHH
Confidence 3445555566666666 33333344444333
No 350
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=44.01 E-value=2.4e+02 Score=25.25 Aligned_cols=88 Identities=22% Similarity=0.273 Sum_probs=50.8
Q ss_pred HHHHHHHHHHCCCeEEEEeCC-ChhhHHHHHHHHhCCccccCcceEEe-C---C-CCCCCCCCHHHHHHHHHHhCCCCCc
Q 022348 184 VLRLMDEAKAAGKKVAVCSAA-TKSSVILCLENLIGMERFEGLDCFLA-G---D-DVKQKKPDPSIYVTAAKRLGISEKD 257 (298)
Q Consensus 184 ~~~~l~~L~~~g~~i~i~S~~-~~~~~~~~l~~~~~l~~~~~fd~v~~-~---~-~~~~~KP~~~~~~~~~~~lgi~~~~ 257 (298)
+.+.++.+++.++.+.+-.+. +....-..+... | .|.+.. + + .+.....++..+...+++.+++
T Consensus 120 ~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~ea-G------vd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ip--- 189 (368)
T PRK08649 120 ITERIAEIRDAGVIVAVSLSPQRAQELAPTVVEA-G------VDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVP--- 189 (368)
T ss_pred HHHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHC-C------CCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCC---
Confidence 467889999987766553322 222222223222 3 454443 1 1 2223334677788888887764
Q ss_pred EEEEecCh--hhHHHHHHcCCeEEEEc
Q 022348 258 CLVVEDSV--IGLQAATRAGMACVITY 282 (298)
Q Consensus 258 ~~~vgD~~--~Di~~a~~aG~~~v~~~ 282 (298)
++.||-. .+.+.+..+|+..|++.
T Consensus 190 -VIaG~V~t~e~A~~l~~aGAD~V~VG 215 (368)
T PRK08649 190 -VIVGGCVTYTTALHLMRTGAAGVLVG 215 (368)
T ss_pred -EEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence 3446644 47777778999998664
No 351
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=42.93 E-value=20 Score=23.64 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=15.0
Q ss_pred ccEEEEecCCccccchhHH
Q 022348 67 LQALIFDCDGVIIESEHLH 85 (298)
Q Consensus 67 ~k~viFD~DGTL~d~~~~~ 85 (298)
.-.|+++-|||.+|++..+
T Consensus 38 ~~~l~L~eDGT~VddEeyF 56 (74)
T smart00266 38 PVTLVLEEDGTIVDDEEYF 56 (74)
T ss_pred CcEEEEecCCcEEccHHHH
Confidence 4568899999999887543
No 352
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=42.91 E-value=2.2e+02 Score=24.45 Aligned_cols=99 Identities=15% Similarity=0.147 Sum_probs=63.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCC-CCCCH---HHHHHHHHHhCCCCCcEE
Q 022348 184 VLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQ-KKPDP---SIYVTAAKRLGISEKDCL 259 (298)
Q Consensus 184 ~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~-~KP~~---~~~~~~~~~lgi~~~~~~ 259 (298)
+.++|...++.++-+..+.-.+.+.++.+++-. .-.. -..|+....... .-+.. .+...++++..++ =++
T Consensus 6 ~k~iL~~A~~~~yaV~AfNv~n~e~~~avi~AA-ee~~---sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VP--Val 79 (284)
T PRK12857 6 VAELLKKAEKGGYAVGAFNCNNMEIVQAIVAAA-EAEK---SPVIIQASQGAIKYAGIEYISAMVRTAAEKASVP--VAL 79 (284)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHH-HHhC---CCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCC--EEE
Confidence 678899999999999888877888788777665 2222 134443322111 11111 2345566677664 355
Q ss_pred EEecC--hhhHHHHHHcCCeEEEEcCCCchh
Q 022348 260 VVEDS--VIGLQAATRAGMACVITYTSSTAE 288 (298)
Q Consensus 260 ~vgD~--~~Di~~a~~aG~~~v~~~~~~~~~ 288 (298)
+.+=+ ..++..|-.+|+..|++.+...+-
T Consensus 80 HLDH~~~~e~i~~ai~~GftSVM~DgS~lp~ 110 (284)
T PRK12857 80 HLDHGTDFEQVMKCIRNGFTSVMIDGSKLPL 110 (284)
T ss_pred ECCCCCCHHHHHHHHHcCCCeEEEeCCCCCH
Confidence 55433 358888889999999999877543
No 353
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=42.85 E-value=60 Score=32.73 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=32.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~ 220 (298)
++.+.....+++|.+.+++...||+.+-.......++. |+-
T Consensus 705 kLK~~T~~VI~eL~~AnIRtVMcTGDNllTaisVakeC-gmi 745 (1140)
T KOG0208|consen 705 KLKEETKRVIDELNRANIRTVMCTGDNLLTAISVAKEC-GMI 745 (1140)
T ss_pred ccccccHHHHHHHHhhcceEEEEcCCchheeeehhhcc-ccc
Confidence 46778899999999999999999998776666666665 443
No 354
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=42.83 E-value=97 Score=22.00 Aligned_cols=31 Identities=26% Similarity=0.201 Sum_probs=23.3
Q ss_pred HHHHHHHHHCCCeEEEEeCCChhhHHHHHHH
Q 022348 185 LRLMDEAKAAGKKVAVCSAATKSSVILCLEN 215 (298)
Q Consensus 185 ~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~ 215 (298)
.+...+|++.|+++++++-++...++...+.
T Consensus 3 ~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~ 33 (115)
T PF13911_consen 3 SRRKPELEAAGVKLVVIGCGSPEGIEKFCEL 33 (115)
T ss_pred hHhHHHHHHcCCeEEEEEcCCHHHHHHHHhc
Confidence 3456789999999999998888555555533
No 355
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=42.31 E-value=3.8e+02 Score=27.12 Aligned_cols=81 Identities=20% Similarity=0.292 Sum_probs=43.6
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCC
Q 022348 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEK 256 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~ 256 (298)
.....+.+.+.+++....|.-+.++.-+... -.++.-. ...||+...--..++++|++.
T Consensus 684 ~~~~~~~i~~~~~~~e~~g~tvv~v~vn~~l------------------~gv~~l~--D~vr~~a~~av~~Lk~~Gi~v- 742 (951)
T KOG0207|consen 684 GCSIPDDILDALTESERKGQTVVYVAVNGQL------------------VGVFALE--DQVRPDAALAVAELKSMGIKV- 742 (951)
T ss_pred CCCCchhHHHhhhhHhhcCceEEEEEECCEE------------------EEEEEec--cccchhHHHHHHHHHhcCceE-
Confidence 3345556666666666666655555432211 1111111 134666555566667777643
Q ss_pred cEEEEecChh-hHHHHHHcCCeEE
Q 022348 257 DCLVVEDSVI-GLQAATRAGMACV 279 (298)
Q Consensus 257 ~~~~vgD~~~-Di~~a~~aG~~~v 279 (298)
++.-||+.+ -...|++.|+.-|
T Consensus 743 -~mLTGDn~~aA~svA~~VGi~~V 765 (951)
T KOG0207|consen 743 -VMLTGDNDAAARSVAQQVGIDNV 765 (951)
T ss_pred -EEEcCCCHHHHHHHHHhhCcceE
Confidence 666677764 5556667775544
No 356
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=42.27 E-value=46 Score=24.04 Aligned_cols=30 Identities=17% Similarity=0.096 Sum_probs=25.1
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhH
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSV 209 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~ 209 (298)
-.+++.+.++.+|++|.++..+|+.....+
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~l 88 (120)
T cd05710 59 NTKETVAAAKFAKEKGATVIGLTDDEDSPL 88 (120)
T ss_pred CChHHHHHHHHHHHcCCeEEEEECCCCCcH
Confidence 456889999999999999999999876533
No 357
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=41.99 E-value=45 Score=27.37 Aligned_cols=36 Identities=28% Similarity=0.493 Sum_probs=30.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc
Q 022348 184 VLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (298)
Q Consensus 184 ~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~ 220 (298)
+.+.+.+|++.|+++..+|+.+...+...-+.+ ++.
T Consensus 28 A~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l-~v~ 63 (274)
T COG3769 28 AAPVLLELKDAGVPVILCSSKTRAEMLYLQKSL-GVQ 63 (274)
T ss_pred cchHHHHHHHcCCeEEEeccchHHHHHHHHHhc-CCC
Confidence 456788999999999999999988777776666 776
No 358
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=41.83 E-value=56 Score=29.57 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=25.4
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEE-eCCC
Q 022348 177 TVEPRPGVLRLMDEAKAAGKKVAVC-SAAT 205 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~g~~i~i~-S~~~ 205 (298)
...++|.+.++++.+++.|+++++. ||+.
T Consensus 84 epl~~~~l~eLl~~lk~~gi~taI~~TnG~ 113 (404)
T TIGR03278 84 DVSCYPELEELTKGLSDLGLPIHLGYTSGK 113 (404)
T ss_pred ccccCHHHHHHHHHHHhCCCCEEEeCCCCc
Confidence 4568899999999999999999995 9965
No 359
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=41.61 E-value=39 Score=28.46 Aligned_cols=29 Identities=24% Similarity=0.155 Sum_probs=25.2
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChh
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKS 207 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~ 207 (298)
-..+.+.++++..|+.|+.+++.||+...
T Consensus 96 ~q~e~~~~~~~~ake~Gl~~~l~TnG~~~ 124 (260)
T COG1180 96 LQAEFALDLLRAAKERGLHVALDTNGFLP 124 (260)
T ss_pred hhHHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 45577889999999999999999999865
No 360
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=41.54 E-value=48 Score=30.84 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=23.5
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~ 220 (298)
+.++..+.+ +..| +..++|...+.+++..++.++|.+
T Consensus 134 v~~e~~~v~---~~~~-~~~vv~~~PrvMve~Flkeyl~~d 170 (525)
T PLN02588 134 VGLEMFQVL---KRGG-KRVGVSDLPQVMIDVFLRDYLEIE 170 (525)
T ss_pred cCHHHHHHH---hhcC-cEEEEecCCHHHHHHHHHHhcCcc
Confidence 334444443 4444 355666688999999999886554
No 361
>TIGR01615 A_thal_3542 uncharacterized plant-specific domain TIGR01615. of a number of uncharacterized plant proteins. The domain is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=40.88 E-value=44 Score=24.84 Aligned_cols=68 Identities=18% Similarity=0.244 Sum_probs=41.3
Q ss_pred HHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCC----------------CCCCCCCHHHHHHHHH
Q 022348 186 RLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDD----------------VKQKKPDPSIYVTAAK 249 (298)
Q Consensus 186 ~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~----------------~~~~KP~~~~~~~~~~ 249 (298)
.++..|+..|+.-+||.......-. + -.|-..| +|+++.+.. ....+|..+ |+.+++
T Consensus 3 ~v~~~Lr~~Gy~AaiCkS~W~~s~~--~--p~G~yey--idV~~~~~~~~~~~R~iVd~dFr~~FeiARpt~~-Y~~ll~ 75 (131)
T TIGR01615 3 IVMSLLRSLGYDAAICKSKWDSSGD--I--PAGKYEY--IDVVDGDGSKKQEMRVIIDLDFRSEFEIARPTEE-YKRLLE 75 (131)
T ss_pred hHHHHHHHCCCCeeeEEeecCCCCC--C--CCCceee--EEEEecCCCCCCcceEEEeccchhhceecCCCHH-HHHHHH
Confidence 4678899999999999876543221 1 1233334 676665531 234456655 778877
Q ss_pred HhCCCCCcEEEEecCh
Q 022348 250 RLGISEKDCLVVEDSV 265 (298)
Q Consensus 250 ~lgi~~~~~~~vgD~~ 265 (298)
.|- .+|||-..
T Consensus 76 ~LP-----~vFVG~~~ 86 (131)
T TIGR01615 76 SLP-----EVFVGTTE 86 (131)
T ss_pred hCC-----cceECCHH
Confidence 653 28999443
No 362
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=40.87 E-value=3.3e+02 Score=26.05 Aligned_cols=99 Identities=16% Similarity=0.280 Sum_probs=57.0
Q ss_pred CCChhHHHHHHHH---HHCCCeEEEEeCCChhh------HHHHHHHHhCCccccCcceEEeCC-CCCCCCCCHHHHHHHH
Q 022348 179 EPRPGVLRLMDEA---KAAGKKVAVCSAATKSS------VILCLENLIGMERFEGLDCFLAGD-DVKQKKPDPSIYVTAA 248 (298)
Q Consensus 179 ~~~pg~~~~l~~L---~~~g~~i~i~S~~~~~~------~~~~l~~~~~l~~~~~fd~v~~~~-~~~~~KP~~~~~~~~~ 248 (298)
..++++.+..+++ -+++-++.|++..+..- +...|+.+ |... ...++... ..|+ -.++..++.+.
T Consensus 50 ~~l~~m~~a~~ri~~ai~~~e~I~I~gDyD~DGitstail~~~L~~~-g~~~---~~~~IP~R~~eGY-Gl~~~~i~~~~ 124 (575)
T PRK11070 50 QQLSGIEKAVELLYNALREGTRIIVVGDFDADGATSTALSVLALRSL-GCSN---VDYLVPNRFEDGY-GLSPEVVDQAH 124 (575)
T ss_pred HHhhCHHHHHHHHHHHHHCCCEEEEEEecCccHHHHHHHHHHHHHHc-CCCc---eEEEeCCCCcCCC-CCCHHHHHHHH
Confidence 3456676666655 34678999998766432 23344444 4311 12223221 2232 34566777766
Q ss_pred HHhCCCCCcEEEEecChhhHHH---HHHcCCeEEEEcCCC
Q 022348 249 KRLGISEKDCLVVEDSVIGLQA---ATRAGMACVITYTSS 285 (298)
Q Consensus 249 ~~lgi~~~~~~~vgD~~~Di~~---a~~aG~~~v~~~~~~ 285 (298)
++ |. +=++.|+-+.++++. |+..|+.+|++....
T Consensus 125 ~~-~~--~LiItvD~Gi~~~e~i~~a~~~gidvIVtDHH~ 161 (575)
T PRK11070 125 AR-GA--QLIVTVDNGISSHAGVAHAHALGIPVLVTDHHL 161 (575)
T ss_pred hc-CC--CEEEEEcCCcCCHHHHHHHHHCCCCEEEECCCC
Confidence 53 44 347888877766555 599999987665543
No 363
>PLN02334 ribulose-phosphate 3-epimerase
Probab=40.69 E-value=2e+02 Score=23.49 Aligned_cols=98 Identities=18% Similarity=0.110 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCC--hhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCC-CcE
Q 022348 182 PGVLRLMDEAKAAGKKVAVCSAAT--KSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISE-KDC 258 (298)
Q Consensus 182 pg~~~~l~~L~~~g~~i~i~S~~~--~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~-~~~ 258 (298)
+...+.++.+++.|.++++..|.. .+.+...++. +..++..+-.+..+.. ..+..+..+..+.+--...+ -.+
T Consensus 102 d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~~~--~~~Dyi~~~~v~pg~~--~~~~~~~~~~~i~~~~~~~~~~~I 177 (229)
T PLN02334 102 IHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEK--GLVDMVLVMSVEPGFG--GQSFIPSMMDKVRALRKKYPELDI 177 (229)
T ss_pred hhHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhc--cCCCEEEEEEEecCCC--ccccCHHHHHHHHHHHHhCCCCcE
Confidence 345688899999999999998742 2222222211 1023222222332221 12233455555433222211 234
Q ss_pred EEE-ecChhhHHHHHHcCCeEEEEcC
Q 022348 259 LVV-EDSVIGLQAATRAGMACVITYT 283 (298)
Q Consensus 259 ~~v-gD~~~Di~~a~~aG~~~v~~~~ 283 (298)
+++ |=+..++.....+|...+++.+
T Consensus 178 ~a~GGI~~e~i~~l~~aGad~vvvgs 203 (229)
T PLN02334 178 EVDGGVGPSTIDKAAEAGANVIVAGS 203 (229)
T ss_pred EEeCCCCHHHHHHHHHcCCCEEEECh
Confidence 455 3555799999999999876544
No 364
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=40.58 E-value=1e+02 Score=27.78 Aligned_cols=45 Identities=11% Similarity=0.233 Sum_probs=29.8
Q ss_pred HHHHhCCCCCcEEEEecCh--hhHHHHHHcCCeEEEEcCCCchhHhh
Q 022348 247 AAKRLGISEKDCLVVEDSV--IGLQAATRAGMACVITYTSSTAEQVR 291 (298)
Q Consensus 247 ~~~~lgi~~~~~~~vgD~~--~Di~~a~~aG~~~v~~~~~~~~~~~~ 291 (298)
.+.+.|+++++++|=|-.. .+++.|...|+..+.+.+..+.+.+.
T Consensus 72 ~al~~G~~~~~Iif~gp~K~~~~l~~a~~~Gv~~i~vDS~~El~~i~ 118 (394)
T cd06831 72 LVQELGVSPENIIYTNPCKQASQIKYAAKVGVNIMTCDNEIELKKIA 118 (394)
T ss_pred HHHhcCCCcCCEEEeCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHH
Confidence 3345788888877777654 58888888887766555555444443
No 365
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=40.22 E-value=69 Score=28.26 Aligned_cols=62 Identities=23% Similarity=0.257 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHCC--CeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEE
Q 022348 183 GVLRLMDEAKAAG--KKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLV 260 (298)
Q Consensus 183 g~~~~l~~L~~~g--~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~ 260 (298)
+..++-++|+++| +.++++|+.....++.-.+-. +-.+.+++++ +|+.+++
T Consensus 52 ~avkiydeL~~~GedveVA~VsG~~~~~v~ad~~I~-------------------------~qld~vl~~~--~~~~~i~ 104 (344)
T PF04123_consen 52 GAVKIYDELKAEGEDVEVAVVSGSPDVGVEADRKIA-------------------------EQLDEVLSKF--DPDSAIV 104 (344)
T ss_pred HHHHHHHHHHhcCCCeEEEEEECCCCCchhhHHHHH-------------------------HHHHHHHHhC--CCCEEEE
Confidence 4456667777776 677888887664332211111 0122344444 4568899
Q ss_pred EecChhhHHHH
Q 022348 261 VEDSVIGLQAA 271 (298)
Q Consensus 261 vgD~~~Di~~a 271 (298)
|.|+..|=...
T Consensus 105 VsDGaeDE~vl 115 (344)
T PF04123_consen 105 VSDGAEDERVL 115 (344)
T ss_pred EecChhhhhhh
Confidence 99999875543
No 366
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=40.13 E-value=1.9e+02 Score=25.88 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=24.1
Q ss_pred CCCCCChhHHHHHHHHHHC-CCe-EEEEeCCCh
Q 022348 176 GTVEPRPGVLRLMDEAKAA-GKK-VAVCSAATK 206 (298)
Q Consensus 176 ~~~~~~pg~~~~l~~L~~~-g~~-i~i~S~~~~ 206 (298)
+...+.+++.++++.+++. |+. +.+.||+..
T Consensus 115 GEPllr~dl~eli~~l~~~~gi~~i~itTNG~l 147 (373)
T PLN02951 115 GEPTLRKDIEDICLQLSSLKGLKTLAMTTNGIT 147 (373)
T ss_pred CCCcchhhHHHHHHHHHhcCCCceEEEeeCcch
Confidence 3445678899999999886 875 788898864
No 367
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=40.13 E-value=60 Score=23.43 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=24.4
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhH
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSV 209 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~ 209 (298)
-..++.+.++.+|++|.++.++|+.....+
T Consensus 65 ~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l 94 (131)
T PF01380_consen 65 ETRELIELLRFAKERGAPVILITSNSESPL 94 (131)
T ss_dssp TTHHHHHHHHHHHHTTSEEEEEESSTTSHH
T ss_pred cchhhhhhhHHHHhcCCeEEEEeCCCCCch
Confidence 445788899999999999999998766533
No 368
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=40.10 E-value=2e+02 Score=25.29 Aligned_cols=99 Identities=12% Similarity=0.086 Sum_probs=63.3
Q ss_pred HHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCC----CC----------------CCCHHHH
Q 022348 185 LRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVK----QK----------------KPDPSIY 244 (298)
Q Consensus 185 ~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~----~~----------------KP~~~~~ 244 (298)
.++|...++.|+-+..+.-.+.+.++.+++-. .-.. -..|+.....+ .+ +.-..+.
T Consensus 2 ~~ll~~A~~~~yAV~AfN~~n~e~~~Avi~aA-ee~~---sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (340)
T cd00453 2 QKVFQVAKENNFALPAVNCVGTDSINAVLETA-AKVK---APVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHV 77 (340)
T ss_pred HHHHHHHHHCCceEEEEEeCCHHHHHHHHHHH-HHhC---CCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHH
Confidence 56788888999988888777777777777655 2211 13333332211 11 1122345
Q ss_pred HHHHHHhCCCCCcEEEEecC----hhhHHHHHHcC-----------CeEEEEcCCCchhH
Q 022348 245 VTAAKRLGISEKDCLVVEDS----VIGLQAATRAG-----------MACVITYTSSTAEQ 289 (298)
Q Consensus 245 ~~~~~~lgi~~~~~~~vgD~----~~Di~~a~~aG-----------~~~v~~~~~~~~~~ 289 (298)
..++++.+++ =+++.+=. ..++..|-.+| +..||+.+...+-+
T Consensus 78 ~~~A~~~~VP--V~lHLDH~~~~~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~e 135 (340)
T cd00453 78 HQMAEHYGVP--VILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQ 135 (340)
T ss_pred HHHHHHCCCC--EEEEcCCCCCCCHHHHHHHHHcCCccccccCCCCceeEEecCCCCCHH
Confidence 5666777774 37777644 47899999999 99999998766543
No 369
>PF12522 UL73_N: Cytomegalovirus glycoprotein N terminal; InterPro: IPR021003 This domain family is found in viruses, and is approximately 30 amino acids in length. The signature is found in association with PF03554 from PFAM. This family is an envelope glycoprotein of (Human herpesvirus 5) [].
Probab=39.90 E-value=27 Score=17.71 Aligned_cols=20 Identities=45% Similarity=0.478 Sum_probs=10.2
Q ss_pred eeeecceeecccCccccccc
Q 022348 5 VILSQTATLSSSSSSTTTTA 24 (298)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (298)
..++.++..++.++++..++
T Consensus 4 lvlSv~~gSs~n~sSTsts~ 23 (27)
T PF12522_consen 4 LVLSVAAGSSGNNSSTSTSA 23 (27)
T ss_pred EEEEEEeccccCCccccccc
Confidence 34556666555555544433
No 370
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=39.83 E-value=1.2e+02 Score=29.38 Aligned_cols=100 Identities=17% Similarity=0.061 Sum_probs=62.6
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcc-eEEeC--CC--------------CCCCCCCHH
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLD-CFLAG--DD--------------VKQKKPDPS 242 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd-~v~~~--~~--------------~~~~KP~~~ 242 (298)
+..+..+.+++-...|+.+-.+|+.......+.-+++ |+.----.. ..++. ++ .+..--.|+
T Consensus 493 prhdsa~tirral~lGv~VkmitgdqlaI~keTgrrl-gmgtnmypss~llG~~~~~~~~~~~v~elie~adgfAgVfpe 571 (942)
T KOG0205|consen 493 PRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRL-GMGTNMYPSSALLGLGKDGSMPGSPVDELIEKADGFAGVFPE 571 (942)
T ss_pred CccchHHHHHHHHhccceeeeecchHHHHHHhhhhhh-ccccCcCCchhhccCCCCCCCCCCcHHHHhhhccCccccCHH
Confidence 3556778888888999999999998877777666666 554210011 11111 00 011112333
Q ss_pred HHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEE
Q 022348 243 IYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVI 280 (298)
Q Consensus 243 ~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~ 280 (298)
--..+.+++.-...-|-|-||+.||..+.+.|.....+
T Consensus 572 hKy~iV~~Lq~r~hi~gmtgdgvndapaLKkAdigiav 609 (942)
T KOG0205|consen 572 HKYEIVKILQERKHIVGMTGDGVNDAPALKKADIGIAV 609 (942)
T ss_pred HHHHHHHHHhhcCceecccCCCcccchhhcccccceee
Confidence 44445555554556689999999999999999877443
No 371
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=39.50 E-value=78 Score=22.48 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCC
Q 022348 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGM 219 (298)
Q Consensus 182 pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l 219 (298)
+++.++..++++.|+.+..++......+...++.. ++
T Consensus 46 ~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~-~~ 82 (124)
T PF00578_consen 46 PELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEY-GL 82 (124)
T ss_dssp HHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHH-TC
T ss_pred hHHHHHhhhhccceEEeeecccccccchhhhhhhh-cc
Confidence 45677778888889999999999888788888777 53
No 372
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=39.45 E-value=36 Score=29.61 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=28.0
Q ss_pred cCCCCCChhHHHHHHHHHHCCCeEEEEeCCChh
Q 022348 175 SGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKS 207 (298)
Q Consensus 175 ~~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~ 207 (298)
.+...+.|++.++++.++++|..+.++||+...
T Consensus 80 GGEPLL~pdl~eiv~~~~~~g~~v~l~TNG~ll 112 (318)
T TIGR03470 80 GGEPLLHPEIDEIVRGLVARKKFVYLCTNALLL 112 (318)
T ss_pred CccccccccHHHHHHHHHHcCCeEEEecCceeh
Confidence 344567899999999999999999999999754
No 373
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=39.38 E-value=68 Score=28.30 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=26.5
Q ss_pred CCCCCChhHHHHHHHHHHCCCeEEEEeCCCh
Q 022348 176 GTVEPRPGVLRLMDEAKAAGKKVAVCSAATK 206 (298)
Q Consensus 176 ~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~ 206 (298)
+...+.|+..++++.+++.|+.+.+.||+..
T Consensus 62 GEPll~~~~~~ii~~~~~~g~~~~l~TNG~l 92 (358)
T TIGR02109 62 GEPLARPDLVELVAHARRLGLYTNLITSGVG 92 (358)
T ss_pred ccccccccHHHHHHHHHHcCCeEEEEeCCcc
Confidence 3445789999999999999999999999864
No 374
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.34 E-value=2.1e+02 Score=23.29 Aligned_cols=88 Identities=18% Similarity=0.211 Sum_probs=49.3
Q ss_pred HHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCH-HHHHHHHHHhCCCCCcEEEEecC
Q 022348 186 RLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDP-SIYVTAAKRLGISEKDCLVVEDS 264 (298)
Q Consensus 186 ~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~-~~~~~~~~~lgi~~~~~~~vgD~ 264 (298)
++++.|.+.++ ++|+.+.+.+....+.+.+... +++.+= +....|.. +.++.+.+++ | +++.--++
T Consensus 7 ~~~~~l~~~~~-iaV~r~~~~~~a~~i~~al~~~----Gi~~iE----itl~~~~~~~~I~~l~~~~---p-~~~IGAGT 73 (212)
T PRK05718 7 SIEEILRAGPV-VPVIVINKLEDAVPLAKALVAG----GLPVLE----VTLRTPAALEAIRLIAKEV---P-EALIGAGT 73 (212)
T ss_pred HHHHHHHHCCE-EEEEEcCCHHHHHHHHHHHHHc----CCCEEE----EecCCccHHHHHHHHHHHC---C-CCEEEEee
Confidence 45667777765 7888888888777777766221 133321 11233332 3344444444 3 33333355
Q ss_pred h---hhHHHHHHcCCeEEEEcCCCc
Q 022348 265 V---IGLQAATRAGMACVITYTSST 286 (298)
Q Consensus 265 ~---~Di~~a~~aG~~~v~~~~~~~ 286 (298)
. .+++.+..+|.++++.++...
T Consensus 74 Vl~~~~a~~a~~aGA~FivsP~~~~ 98 (212)
T PRK05718 74 VLNPEQLAQAIEAGAQFIVSPGLTP 98 (212)
T ss_pred ccCHHHHHHHHHcCCCEEECCCCCH
Confidence 4 467777788988877665433
No 375
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=38.89 E-value=1.5e+02 Score=27.74 Aligned_cols=27 Identities=33% Similarity=0.321 Sum_probs=22.0
Q ss_pred CCcEEEEecChhhHHHHHH---cCCeEEEE
Q 022348 255 EKDCLVVEDSVIGLQAATR---AGMACVIT 281 (298)
Q Consensus 255 ~~~~~~vgD~~~Di~~a~~---aG~~~v~~ 281 (298)
.-+++.||=++..+.+|.. .|.+++++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li 240 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIV 240 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence 4589999999999988775 58887765
No 376
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=38.16 E-value=1.6e+02 Score=21.53 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=44.0
Q ss_pred HHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChh
Q 022348 187 LMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVI 266 (298)
Q Consensus 187 ~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~ 266 (298)
.++.|++ |+.+.+....+. ....+.+ .++|.++....- +-+++.++.+ ..+ +=+...|-+.+
T Consensus 11 ~~~~l~~-~~~v~~~~~~~~---~~~~~~l------~~~d~ii~~~~~---~~~~~~l~~~-~~L----k~I~~~~~G~d 72 (133)
T PF00389_consen 11 EIERLEE-GFEVEFCDSPSE---EELAERL------KDADAIIVGSGT---PLTAEVLEAA-PNL----KLISTAGAGVD 72 (133)
T ss_dssp HHHHHHH-TSEEEEESSSSH---HHHHHHH------TTESEEEESTTS---TBSHHHHHHH-TT-----SEEEESSSSCT
T ss_pred HHHHHHC-CceEEEeCCCCH---HHHHHHh------CCCeEEEEcCCC---CcCHHHHhcc-cee----EEEEEcccccC
Confidence 4445555 776766663333 3334444 236888876432 2344555444 222 23555665553
Q ss_pred --hHHHHHHcCCeEEEEcCC
Q 022348 267 --GLQAATRAGMACVITYTS 284 (298)
Q Consensus 267 --Di~~a~~aG~~~v~~~~~ 284 (298)
|++.+++.|+...-+.+.
T Consensus 73 ~id~~~a~~~gI~V~n~~g~ 92 (133)
T PF00389_consen 73 NIDLEAAKERGIPVTNVPGY 92 (133)
T ss_dssp TB-HHHHHHTTSEEEE-TTT
T ss_pred cccHHHHhhCeEEEEEeCCc
Confidence 999999999996555554
No 377
>PLN02580 trehalose-phosphatase
Probab=38.12 E-value=56 Score=29.30 Aligned_cols=36 Identities=8% Similarity=-0.003 Sum_probs=30.9
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHH
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLE 214 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~ 214 (298)
..+.|++.++|+.|.+. .+++|+|+.....+...+.
T Consensus 140 A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~~~l~ 175 (384)
T PLN02580 140 ALMSDAMRSAVKNVAKY-FPTAIISGRSRDKVYELVG 175 (384)
T ss_pred ccCCHHHHHHHHHHhhC-CCEEEEeCCCHHHHHHHhC
Confidence 46788999999999998 5899999999888876664
No 378
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=37.76 E-value=2.3e+02 Score=23.26 Aligned_cols=97 Identities=12% Similarity=0.116 Sum_probs=56.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceE--EeCCC-CCCCCCCHHHHHHHHHHhCCCC
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCF--LAGDD-VKQKKPDPSIYVTAAKRLGISE 255 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v--~~~~~-~~~~KP~~~~~~~~~~~lgi~~ 255 (298)
+..+...++++.+|+.|++.+++=|-... +..+..-+ .. +|.| .+... .+--|--|+.++++.+--..-.
T Consensus 93 E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp-~~~i~~~l-~~-----vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~ 165 (220)
T COG0036 93 EATEHIHRTIQLIKELGVKAGLVLNPATP-LEALEPVL-DD-----VDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMID 165 (220)
T ss_pred ccCcCHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHH-hh-----CCEEEEEeECCCCcccccCHHHHHHHHHHHHHhc
Confidence 45678899999999999999999887654 22222222 11 3443 33332 2333555666666543221111
Q ss_pred ---CcEEEEecCh--hhHHHHHHcCCeEEEEc
Q 022348 256 ---KDCLVVEDSV--IGLQAATRAGMACVITY 282 (298)
Q Consensus 256 ---~~~~~vgD~~--~Di~~a~~aG~~~v~~~ 282 (298)
+-.+-|+=+. ..+..+..+|...++..
T Consensus 166 ~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaG 197 (220)
T COG0036 166 ERLDILIEVDGGINLETIKQLAAAGADVFVAG 197 (220)
T ss_pred ccCCeEEEEeCCcCHHHHHHHHHcCCCEEEEE
Confidence 2234555444 37778888999976543
No 379
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=37.53 E-value=2.6e+02 Score=23.88 Aligned_cols=98 Identities=17% Similarity=0.103 Sum_probs=62.1
Q ss_pred HHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCC-CCC----CHHHHHHHHHHhC-CCCCc
Q 022348 184 VLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQ-KKP----DPSIYVTAAKRLG-ISEKD 257 (298)
Q Consensus 184 ~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~-~KP----~~~~~~~~~~~lg-i~~~~ 257 (298)
+.++|...+++|+-+..+.-.+.+.++.+++-. .-.. ...|+....... ..+ -......++++.+ ++ =
T Consensus 4 ~~~~l~~A~~~~yav~Afn~~n~e~~~avi~aA-e~~~---~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vp--v 77 (282)
T TIGR01859 4 GKEILQKAKKEGYAVGAFNFNNLEWTQAILEAA-EEEN---SPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVP--V 77 (282)
T ss_pred HHHHHHHHHHCCceEEEEEECCHHHHHHHHHHH-HHhC---CCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCe--E
Confidence 568889999999999888777778788777765 2222 234444332111 112 1233455566666 43 2
Q ss_pred EEEEec---ChhhHHHHHHcCCeEEEEcCCCchh
Q 022348 258 CLVVED---SVIGLQAATRAGMACVITYTSSTAE 288 (298)
Q Consensus 258 ~~~vgD---~~~Di~~a~~aG~~~v~~~~~~~~~ 288 (298)
+++. | ....++.+-.+|+..|++.+...+.
T Consensus 78 ~lhl-DH~~~~e~i~~ai~~Gf~sVmid~s~l~~ 110 (282)
T TIGR01859 78 ALHL-DHGSSYESCIKAIKAGFSSVMIDGSHLPF 110 (282)
T ss_pred EEEC-CCCCCHHHHHHHHHcCCCEEEECCCCCCH
Confidence 4444 6 5567779999999999988766543
No 380
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=37.48 E-value=1.6e+02 Score=22.25 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=40.6
Q ss_pred eEEeCCCCCCC---CCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHH---c--CCeEEEEcCCCch
Q 022348 227 CFLAGDDVKQK---KPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATR---A--GMACVITYTSSTA 287 (298)
Q Consensus 227 ~v~~~~~~~~~---KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~---a--G~~~v~~~~~~~~ 287 (298)
.+..+++...+ .-...++...++++|......-.+.|...++..+-+ . +...|++.|+...
T Consensus 5 ii~~~~e~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~ 73 (152)
T cd00886 5 VLTVSDTRSAGEAEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGL 73 (152)
T ss_pred EEEEcCcccCCCCccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCC
Confidence 34455554433 233456777889999988888889999988776533 2 6777777766543
No 381
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=37.38 E-value=28 Score=23.29 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=14.9
Q ss_pred ccEEEEecCCccccchhHH
Q 022348 67 LQALIFDCDGVIIESEHLH 85 (298)
Q Consensus 67 ~k~viFD~DGTL~d~~~~~ 85 (298)
.-.|+++-|||.+|.+..+
T Consensus 40 ~~~lvL~eDGTeVddEeYF 58 (78)
T cd01615 40 PVTLVLEEDGTEVDDEEYF 58 (78)
T ss_pred CeEEEEeCCCcEEccHHHH
Confidence 4458999999999877543
No 382
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=37.32 E-value=2.9e+02 Score=24.50 Aligned_cols=99 Identities=15% Similarity=0.125 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCC--C--CCC---------------CCHHH
Q 022348 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDV--K--QKK---------------PDPSI 243 (298)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~--~--~~K---------------P~~~~ 243 (298)
.+.++|...+++|+-+..+.-.+.+.++.+++-. .-.+ -..|+..... . ..+ .-..+
T Consensus 3 ~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AA-ee~~---sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (345)
T cd00946 3 DVLKLFDYAKENGFAIPAVNCTSSSTINAVLEAA-RDAK---SPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHH 78 (345)
T ss_pred HHHHHHHHHHHCCceEEEEeeCCHHHHHHHHHHH-HHhC---CCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHH
Confidence 5678899999999988888777777777777665 2222 1233322211 0 011 11345
Q ss_pred HHHHHHHhCCCCCcEEEEecChhh-------------HH---HHHHcCCeEEEEcCCCchh
Q 022348 244 YVTAAKRLGISEKDCLVVEDSVIG-------------LQ---AATRAGMACVITYTSSTAE 288 (298)
Q Consensus 244 ~~~~~~~lgi~~~~~~~vgD~~~D-------------i~---~a~~aG~~~v~~~~~~~~~ 288 (298)
...++++.+++ =+++.+ ...| .+ .+..+|+..||+.+...+-
T Consensus 79 v~~~A~~~~VP--ValHLD-Hg~~~~~~~~~~~~~a~~~~~~~a~~~GftSVMiDgS~lp~ 136 (345)
T cd00946 79 VRSMAEHYGVP--VVLHTD-HCAKKLLPWFDGLLEADEEYFKQHGEPLFSSHMLDLSEEPL 136 (345)
T ss_pred HHHHHHHCCCC--EEEECC-CCCCccchhhHHHHHHHHHHHHHhccCCCceEEeeCCCCCH
Confidence 56677777774 245554 3333 22 2336689999998876543
No 383
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=37.19 E-value=1.7e+02 Score=27.33 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=23.2
Q ss_pred CCCCcEEEEecChhhHHHHHH---cCCeEEEE
Q 022348 253 ISEKDCLVVEDSVIGLQAATR---AGMACVIT 281 (298)
Q Consensus 253 i~~~~~~~vgD~~~Di~~a~~---aG~~~v~~ 281 (298)
....++++||=++..+.+|.. .|.+++++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li 241 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMV 241 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence 345789999999999988766 48887765
No 384
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=37.09 E-value=1.9e+02 Score=24.37 Aligned_cols=73 Identities=15% Similarity=0.241 Sum_probs=48.4
Q ss_pred CCCeEEEEeCCChhhHHHHHHHH--hCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHH
Q 022348 194 AGKKVAVCSAATKSSVILCLENL--IGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAA 271 (298)
Q Consensus 194 ~g~~i~i~S~~~~~~~~~~l~~~--~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a 271 (298)
.-+.|.++|.++...-..+++.. .|+.- -..++++.+ + |.- .++.++++ +|..-+..|+..|
T Consensus 35 ~~VEVVllSRNspdTGlRv~nSI~hygL~I---tR~~ft~G~-----~-~~~---Yl~af~v~----LFLSan~~DV~~A 98 (264)
T PF06189_consen 35 PLVEVVLLSRNSPDTGLRVFNSIRHYGLDI---TRAAFTGGE-----S-PYP---YLKAFNVD----LFLSANEDDVQEA 98 (264)
T ss_pred CceEEEEEecCCHHHHHHHHHhHHHhCCcc---eeeeecCCC-----C-HHH---HHHHhCCc----eEeeCCHHHHHHH
Confidence 35789999999877665555433 14442 134454432 1 122 45567775 6999999999999
Q ss_pred HHcCCeEEEEc
Q 022348 272 TRAGMACVITY 282 (298)
Q Consensus 272 ~~aG~~~v~~~ 282 (298)
..+|+....+.
T Consensus 99 i~~G~~Aa~v~ 109 (264)
T PF06189_consen 99 IDAGIPAATVL 109 (264)
T ss_pred HHcCCCcEEee
Confidence 99999987544
No 385
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=37.05 E-value=2e+02 Score=23.39 Aligned_cols=35 Identities=11% Similarity=0.178 Sum_probs=19.3
Q ss_pred cEEEEecChhhH------HHHHHcCCeEE-EEcCCCchhHhh
Q 022348 257 DCLVVEDSVIGL------QAATRAGMACV-ITYTSSTAEQVR 291 (298)
Q Consensus 257 ~~~~vgD~~~Di------~~a~~aG~~~v-~~~~~~~~~~~~ 291 (298)
+.++.||...|. ..+..+|+..+ -+|+....+-++
T Consensus 88 ~~vv~G~i~sd~~~~~~e~v~~~~gl~~~~PLw~~~~~el~~ 129 (218)
T TIGR03679 88 EGIVTGAIASRYQKSRIERICEELGLKVFAPLWGRDQEEYLR 129 (218)
T ss_pred CEEEECCcccHhHHHHHHHHHHhCCCeEEeehhcCCHHHHHH
Confidence 356677665443 34455666655 556655544443
No 386
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=37.01 E-value=60 Score=28.91 Aligned_cols=44 Identities=25% Similarity=0.256 Sum_probs=30.6
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc
Q 022348 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~ 220 (298)
.+....-+..-|-.|-++|++|+|||........+.-+++-|+-
T Consensus 164 sl~~d~pvi~~ii~LL~~gv~VgIVTAAGY~~a~kY~~RL~GLL 207 (408)
T PF06437_consen 164 SLEPDNPVIPRIIKLLRRGVKVGIVTAAGYPGAEKYEERLHGLL 207 (408)
T ss_pred CCCCCchHHHHHHHHHhcCCeEEEEeCCCCCChHHHHHHHHHHH
Confidence 34445566777777888899999999987666665555554443
No 387
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=36.77 E-value=26 Score=23.56 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=14.5
Q ss_pred cEEEEecCCccccchhHH
Q 022348 68 QALIFDCDGVIIESEHLH 85 (298)
Q Consensus 68 k~viFD~DGTL~d~~~~~ 85 (298)
-.|+++-|||.+|++..+
T Consensus 43 ~~lvL~eDGT~VddEeyF 60 (80)
T cd06536 43 ITLVLAEDGTIVEDEDYF 60 (80)
T ss_pred eEEEEecCCcEEccHHHH
Confidence 468899999999887543
No 388
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=36.48 E-value=2.4e+02 Score=23.15 Aligned_cols=95 Identities=16% Similarity=0.104 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcce--EEeCCC-CCCCCCCHHHHHHHHH--Hh-C-CC
Q 022348 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDC--FLAGDD-VKQKKPDPSIYVTAAK--RL-G-IS 254 (298)
Q Consensus 182 pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~--v~~~~~-~~~~KP~~~~~~~~~~--~l-g-i~ 254 (298)
+...++|+.+|+.|.+.+++=|-... +..+...+ .. .|. +.+.+. .+-.|-.+..++++.+ ++ . -.
T Consensus 97 ~~~~~~l~~Ir~~g~k~GlalnP~T~-~~~i~~~l-~~-----vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~ 169 (223)
T PRK08745 97 RHVHRTIQLIKSHGCQAGLVLNPATP-VDILDWVL-PE-----LDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALG 169 (223)
T ss_pred ccHHHHHHHHHHCCCceeEEeCCCCC-HHHHHHHH-hh-----cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcC
Confidence 45788999999999999999887655 33332222 22 343 344332 2223444555555432 22 1 11
Q ss_pred CCcEEEEecChh--hHHHHHHcCCeEEEEcC
Q 022348 255 EKDCLVVEDSVI--GLQAATRAGMACVITYT 283 (298)
Q Consensus 255 ~~~~~~vgD~~~--Di~~a~~aG~~~v~~~~ 283 (298)
.+--+-|+=+.+ .+.....+|...+++.+
T Consensus 170 ~~~~IeVDGGI~~eti~~l~~aGaDi~V~GS 200 (223)
T PRK08745 170 KPIRLEIDGGVKADNIGAIAAAGADTFVAGS 200 (223)
T ss_pred CCeeEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 223366665554 77888999999765543
No 389
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=36.48 E-value=1.8e+02 Score=23.40 Aligned_cols=86 Identities=15% Similarity=0.221 Sum_probs=47.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCC----CCCCCCCH---HHHHHHHHHhCCCCC
Q 022348 184 VLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDD----VKQKKPDP---SIYVTAAKRLGISEK 256 (298)
Q Consensus 184 ~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~----~~~~KP~~---~~~~~~~~~lgi~~~ 256 (298)
+.+.++.|++.|+++++=--+........+..+ . +|.+-.... .....-.. ..+..+++.+|+
T Consensus 135 ~~~~i~~l~~~G~~ialddfg~~~~~~~~l~~l-~------~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--- 204 (241)
T smart00052 135 AVATLQRLRELGVRIALDDFGTGYSSLSYLKRL-P------VDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGL--- 204 (241)
T ss_pred HHHHHHHHHHCCCEEEEeCCCCcHHHHHHHHhC-C------CCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCC---
Confidence 448899999999999876433322222334333 2 233322111 11111122 233445556665
Q ss_pred cEEEEe-cChhhHHHHHHcCCeEE
Q 022348 257 DCLVVE-DSVIGLQAATRAGMACV 279 (298)
Q Consensus 257 ~~~~vg-D~~~Di~~a~~aG~~~v 279 (298)
.+++=| ++..+++.++..|+..+
T Consensus 205 ~via~gVe~~~~~~~l~~~Gi~~~ 228 (241)
T smart00052 205 QVVAEGVETPEQLDLLRSLGCDYG 228 (241)
T ss_pred eEEEecCCCHHHHHHHHHcCCCEE
Confidence 345555 77789999999999865
No 390
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.33 E-value=2.1e+02 Score=25.88 Aligned_cols=97 Identities=20% Similarity=0.293 Sum_probs=56.0
Q ss_pred CChhHHHHHHHHHH-CCCeEEEE-eCCChhhHHHHHHHHhCCcccc--CcceEEeCCCCCCCCCCHHHHHHHHHHh-CCC
Q 022348 180 PRPGVLRLMDEAKA-AGKKVAVC-SAATKSSVILCLENLIGMERFE--GLDCFLAGDDVKQKKPDPSIYVTAAKRL-GIS 254 (298)
Q Consensus 180 ~~pg~~~~l~~L~~-~g~~i~i~-S~~~~~~~~~~l~~~~~l~~~~--~fd~v~~~~~~~~~KP~~~~~~~~~~~l-gi~ 254 (298)
..+|+.+-|..... .+++++.- |..++. . ++ .- |+..|. .||.|+ .|.-+.-|-+...|+...+-- -+.
T Consensus 140 FRagAfDQLkqnA~k~~iP~ygsyte~dpv--~-ia-~e-gv~~fKke~fdvII-vDTSGRh~qe~sLfeEM~~v~~ai~ 213 (483)
T KOG0780|consen 140 FRAGAFDQLKQNATKARVPFYGSYTEADPV--K-IA-SE-GVDRFKKENFDVII-VDTSGRHKQEASLFEEMKQVSKAIK 213 (483)
T ss_pred cccchHHHHHHHhHhhCCeeEecccccchH--H-HH-HH-HHHHHHhcCCcEEE-EeCCCchhhhHHHHHHHHHHHhhcC
Confidence 55677666655332 34554442 222222 1 11 11 333322 367665 466677777778888776543 567
Q ss_pred CCcEEEEecChhhHHHHHH-------cCCeEEEEc
Q 022348 255 EKDCLVVEDSVIGLQAATR-------AGMACVITY 282 (298)
Q Consensus 255 ~~~~~~vgD~~~Di~~a~~-------aG~~~v~~~ 282 (298)
|.+++||-|....-.+... +++..|++.
T Consensus 214 Pd~vi~VmDasiGQaae~Qa~aFk~~vdvg~vIlT 248 (483)
T KOG0780|consen 214 PDEIIFVMDASIGQAAEAQARAFKETVDVGAVILT 248 (483)
T ss_pred CCeEEEEEeccccHhHHHHHHHHHHhhccceEEEE
Confidence 9999999999876655443 466666443
No 391
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=36.00 E-value=73 Score=26.06 Aligned_cols=92 Identities=17% Similarity=0.170 Sum_probs=59.1
Q ss_pred CCCChhHH-HHHHHHHHCCCeEEEEeCCChh-----hHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHh
Q 022348 178 VEPRPGVL-RLMDEAKAAGKKVAVCSAATKS-----SVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRL 251 (298)
Q Consensus 178 ~~~~pg~~-~~l~~L~~~g~~i~i~S~~~~~-----~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l 251 (298)
+.+.|++. ++.+.+++.|++..|+...... .++..++.+ |+.-. |.-.+++=+- ..-..++..++.+
T Consensus 58 y~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~-gi~~~--~P~~~CsL~~----~~~p~i~~F~~~f 130 (217)
T PF02593_consen 58 YGLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEF-GIEVE--FPKPFCSLEE----NGNPQIDEFAEYF 130 (217)
T ss_pred eccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhc-Cceee--cCccccccCC----CCChhHHHHHHHh
Confidence 46778876 6777888899999999887776 777888887 76654 5555544221 2233677777788
Q ss_pred CCCCCcEEEEecCh-hhHHHHHHcCCe
Q 022348 252 GISEKDCLVVEDSV-IGLQAATRAGMA 277 (298)
Q Consensus 252 gi~~~~~~~vgD~~-~Di~~a~~aG~~ 277 (298)
|-+-=+ +.|.|+. .|++-.+.+=++
T Consensus 131 GkP~~e-i~v~~~~I~~V~VlR~aPCG 156 (217)
T PF02593_consen 131 GKPKVE-IEVENGKIKDVKVLRSAPCG 156 (217)
T ss_pred CCceEE-EEecCCcEEEEEEEecCCCc
Confidence 854333 4455543 465555554443
No 392
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=35.86 E-value=1.2e+02 Score=24.53 Aligned_cols=87 Identities=17% Similarity=0.237 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCC----CC---CCCCCHHHHHHHHHHhCCCC
Q 022348 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDD----VK---QKKPDPSIYVTAAKRLGISE 255 (298)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~----~~---~~KP~~~~~~~~~~~lgi~~ 255 (298)
.+.+.++.|++.|+++++---+........+..+ . +|.|-.... .. ....--..+...++.+|+
T Consensus 133 ~~~~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~-~------~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-- 203 (240)
T cd01948 133 EALATLRRLRALGVRIALDDFGTGYSSLSYLKRL-P------VDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGL-- 203 (240)
T ss_pred HHHHHHHHHHHCCCeEEEeCCCCcHhhHHHHHhC-C------CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCC--
Confidence 3788999999999999984322222222223322 2 233321110 01 111112234444555665
Q ss_pred CcEEEEe-cChhhHHHHHHcCCeEE
Q 022348 256 KDCLVVE-DSVIGLQAATRAGMACV 279 (298)
Q Consensus 256 ~~~~~vg-D~~~Di~~a~~aG~~~v 279 (298)
.+++=| ++..+++.++..|+..+
T Consensus 204 -~via~gVe~~~~~~~~~~~gi~~~ 227 (240)
T cd01948 204 -KVVAEGVETEEQLELLRELGCDYV 227 (240)
T ss_pred -eEEEEecCCHHHHHHHHHcCCCee
Confidence 456667 88899999999999865
No 393
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=35.59 E-value=2.4e+02 Score=22.92 Aligned_cols=83 Identities=13% Similarity=0.195 Sum_probs=51.8
Q ss_pred CCCeEEEEeCCC---hhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecChh--hH
Q 022348 194 AGKKVAVCSAAT---KSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVI--GL 268 (298)
Q Consensus 194 ~g~~i~i~S~~~---~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~--Di 268 (298)
.++.+-++.++- +..++...... +..|. .|+++..... ..-|-|.-.+.++++-+++ ++.|||.+. --
T Consensus 30 edi~vrVvgsgaKM~Pe~veaav~~~--~e~~~-pDfvi~isPN-paaPGP~kARE~l~~s~~P---aiiigDaPg~~vk 102 (277)
T COG1927 30 EDIEVRVVGSGAKMDPECVEAAVTEM--LEEFN-PDFVIYISPN-PAAPGPKKAREILSDSDVP---AIIIGDAPGLKVK 102 (277)
T ss_pred CCceEEEeccccccChHHHHHHHHHH--HHhcC-CCEEEEeCCC-CCCCCchHHHHHHhhcCCC---EEEecCCccchhH
Confidence 478888887663 33344444333 12221 3655443322 3456677788888877765 799999993 44
Q ss_pred HHHHHcCCeEEEEcC
Q 022348 269 QAATRAGMACVITYT 283 (298)
Q Consensus 269 ~~a~~aG~~~v~~~~ 283 (298)
...+.-|++.|++.-
T Consensus 103 deleeqGlGYIivk~ 117 (277)
T COG1927 103 DELEEQGLGYIIVKA 117 (277)
T ss_pred HHHHhcCCeEEEecC
Confidence 567788999987654
No 394
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=35.25 E-value=63 Score=25.18 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=25.8
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhHH
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVI 210 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~ 210 (298)
-.+.+.++++.++++|.++..+|+.....+.
T Consensus 84 ~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la 114 (179)
T TIGR03127 84 ETESLVTVAKKAKEIGATVAAITTNPESTLG 114 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCCchH
Confidence 4567899999999999999999998765443
No 395
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=35.15 E-value=3.7e+02 Score=24.90 Aligned_cols=36 Identities=11% Similarity=0.002 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEE
Q 022348 239 PDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACV 279 (298)
Q Consensus 239 P~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v 279 (298)
+++.-+..++++.+.+ ++||.+. +-..|++.|++++
T Consensus 391 ~d~~el~~~i~~~~pD----l~ig~~~-~~~~a~k~gIP~~ 426 (466)
T TIGR01282 391 VTHYEFEEFVEKLKPD----LVGSGIK-EKYVFQKMGVPFR 426 (466)
T ss_pred CCHHHHHHHHHHhCCC----EEEecCC-ccceeeecCCCcc
Confidence 4444455555555443 4566553 4556666666654
No 396
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=35.08 E-value=13 Score=24.15 Aligned_cols=35 Identities=11% Similarity=0.315 Sum_probs=25.0
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHH
Q 022348 235 KQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQ 269 (298)
Q Consensus 235 ~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~ 269 (298)
+..-|-...++.+++++.+++..+..+-+....+-
T Consensus 23 PE~apftaVlkfaAeeF~vp~~tsaiItndG~GIn 57 (76)
T PF03671_consen 23 PEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGIN 57 (76)
T ss_dssp ETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-
T ss_pred CCCCchHHHHHHHHHHcCCCCceEEEEecCCcccc
Confidence 34567778899999999999998888876554443
No 397
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=35.02 E-value=1.7e+02 Score=22.28 Aligned_cols=86 Identities=14% Similarity=0.102 Sum_probs=44.8
Q ss_pred CCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCC--CHHHHHHHHHHhCC--CCCcEEEEecChhhHH
Q 022348 194 AGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKP--DPSIYVTAAKRLGI--SEKDCLVVEDSVIGLQ 269 (298)
Q Consensus 194 ~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP--~~~~~~~~~~~lgi--~~~~~~~vgD~~~Di~ 269 (298)
.+.++.+++|.+.......+..+ ..... =.++.|.......+ ....+..++++.+. ....+++|-|...-+.
T Consensus 48 ~~~~i~~~~~~D~~~~~~~~~~~-~~~~t---lvi~iSkSG~T~Et~~~~~~a~~~l~~~~~~~~~~~~vaiT~~~s~l~ 123 (158)
T cd05015 48 GGLRLHFVSNVDPDDLAELLKKL-DPETT---LFIVISKSGTTLETLANARLAREWLEEAGGDDLAKHFVAITDNGSGLL 123 (158)
T ss_pred CCceEEEEeCCCHHHHHHHHHhC-CcccE---EEEEEECCcCCHHHHHHHHHHHHHHHHhccccccceEEEEcCCChHHH
Confidence 46778888888887766666554 32221 23444433221111 11223333333333 4568889988665555
Q ss_pred H-HHHcCCeEEEEcC
Q 022348 270 A-ATRAGMACVITYT 283 (298)
Q Consensus 270 ~-a~~aG~~~v~~~~ 283 (298)
. +...|..+..++.
T Consensus 124 ~~a~~~~~~~~~~~~ 138 (158)
T cd05015 124 KKAGIEGLNTFEIPD 138 (158)
T ss_pred HHcCCCcceeeeCCC
Confidence 5 5556666554443
No 398
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=34.90 E-value=1.8e+02 Score=21.84 Aligned_cols=78 Identities=8% Similarity=0.072 Sum_probs=31.9
Q ss_pred CChhhHHHHHHHHhCCccccCcceEEeCCCCCC-CCCCHHHHHHHHHHhCCCCCcEEEEecChh---hHHH----HHHcC
Q 022348 204 ATKSSVILCLENLIGMERFEGLDCFLAGDDVKQ-KKPDPSIYVTAAKRLGISEKDCLVVEDSVI---GLQA----ATRAG 275 (298)
Q Consensus 204 ~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~-~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~---Di~~----a~~aG 275 (298)
.....+...++.+ .-... -..++++..... ..+..+.+...+.+.|++.+.++.-..+.+ ++.. .+..|
T Consensus 21 ~~~~R~~~a~~L~-~~g~~--~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~~~I~~e~~s~~T~ena~~~~~~~~~~~ 97 (155)
T PF02698_consen 21 ESRERLDEAARLY-KAGYA--PRILFSGGYGHGDGRSEAEAMRDYLIELGVPEERIILEPKSTNTYENARFSKRLLKERG 97 (155)
T ss_dssp S-HHHHHHHHHHH-H-HHT----EEEE--SSTTHTS-HHHHHHHHHHHT---GGGEEEE----SHHHHHHHHHHHHHT-S
T ss_pred hHHHHHHHHHHHH-hcCCC--CeEEECCCCCCCCCCCHHHHHHHHHHhcccchheeEccCCCCCHHHHHHHHHHHHHhhc
Confidence 4444455555444 22111 234555543332 567788888888888888776555443333 2222 33356
Q ss_pred CeEE-EEcCC
Q 022348 276 MACV-ITYTS 284 (298)
Q Consensus 276 ~~~v-~~~~~ 284 (298)
++.+ ++...
T Consensus 98 ~~~iilVT~~ 107 (155)
T PF02698_consen 98 WQSIILVTSP 107 (155)
T ss_dssp SS-EEEE--C
T ss_pred CCeEEEECCH
Confidence 6554 44443
No 399
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=34.46 E-value=3e+02 Score=23.57 Aligned_cols=99 Identities=17% Similarity=0.178 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCC-CCCCCH---HHHHHHHHHhCCCCCcE
Q 022348 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVK-QKKPDP---SIYVTAAKRLGISEKDC 258 (298)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~-~~KP~~---~~~~~~~~~lgi~~~~~ 258 (298)
-+.++|..-++.|+-+..+.-.+.+.++.+++-. .-.+ -..|+...... ...+.. .++..++++..++ =+
T Consensus 5 ~~~~~l~~A~~~~yaV~Afn~~n~e~~~avi~aA-e~~~---~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vp--v~ 78 (281)
T PRK06806 5 QMKELLKKANQENYGVGAFSVANMEMVMGAIKAA-EELN---SPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVP--VA 78 (281)
T ss_pred cHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHH-HHhC---CCEEEEcCcchhccCChHHHHHHHHHHHHHCCCC--EE
Confidence 3678999999999999999888888888877765 2222 13343332211 112222 2445566666664 34
Q ss_pred EEEec--ChhhHHHHHHcCCeEEEEcCCCch
Q 022348 259 LVVED--SVIGLQAATRAGMACVITYTSSTA 287 (298)
Q Consensus 259 ~~vgD--~~~Di~~a~~aG~~~v~~~~~~~~ 287 (298)
++.+= +...++.|-.+|+..|++.+...+
T Consensus 79 lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~ 109 (281)
T PRK06806 79 VHFDHGMTFEKIKEALEIGFTSVMFDGSHLP 109 (281)
T ss_pred EECCCCCCHHHHHHHHHcCCCEEEEcCCCCC
Confidence 55542 335677788889999988876554
No 400
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=34.44 E-value=32 Score=24.21 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=23.6
Q ss_pred CCcEEEE-ecChhhHHHHHHcCCeEEEEcCCCchh
Q 022348 255 EKDCLVV-EDSVIGLQAATRAGMACVITYTSSTAE 288 (298)
Q Consensus 255 ~~~~~~v-gD~~~Di~~a~~aG~~~v~~~~~~~~~ 288 (298)
+..+|.+ ||+.+=+..|..+|+.++++.++..++
T Consensus 40 ~~~lvIt~gdR~di~~~a~~~~i~~iIltg~~~~~ 74 (105)
T PF07085_consen 40 PGDLVITPGDREDIQLAAIEAGIACIILTGGLEPS 74 (105)
T ss_dssp TTEEEEEETT-HHHHHHHCCTTECEEEEETT----
T ss_pred CCeEEEEeCCcHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 3677888 899888888889999998777655544
No 401
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=34.23 E-value=3e+02 Score=23.56 Aligned_cols=102 Identities=19% Similarity=0.131 Sum_probs=57.1
Q ss_pred HHHHHHHHHHCCCeEEEEeCCChhhHH----HHHH-HHhCCccccCcceEEeC---CCCCCCCCCHHHHHHHHHHhCCCC
Q 022348 184 VLRLMDEAKAAGKKVAVCSAATKSSVI----LCLE-NLIGMERFEGLDCFLAG---DDVKQKKPDPSIYVTAAKRLGISE 255 (298)
Q Consensus 184 ~~~~l~~L~~~g~~i~i~S~~~~~~~~----~~l~-~~~~l~~~~~fd~v~~~---~~~~~~KP~~~~~~~~~~~lgi~~ 255 (298)
+.-+++.|+++++++.-.|=......+ +.+. +.+|. .+ ||.-.++ .....--|.++.|+..++.+|+..
T Consensus 9 ~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga-~~--fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~n 85 (286)
T KOG1529|consen 9 VKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGA-SH--FDLDIISYPSSPYRHMLPTAEHFAEYASRLGVDN 85 (286)
T ss_pred hHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCc-ee--eeccccccCCCcccccCccHHHHHHHHHhcCCCC
Confidence 344556666677777666643322211 1111 22122 22 4433332 233455677899999999999998
Q ss_pred CcEEEEecCh--------hhHHHHHHcCCeEE-EEcCCCchh
Q 022348 256 KDCLVVEDSV--------IGLQAATRAGMACV-ITYTSSTAE 288 (298)
Q Consensus 256 ~~~~~vgD~~--------~Di~~a~~aG~~~v-~~~~~~~~~ 288 (298)
.+-++|=|.. .=.-+.+..|...| +++|+....
T Consensus 86 ~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~W 127 (286)
T KOG1529|consen 86 GDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAW 127 (286)
T ss_pred CCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHH
Confidence 7655555552 12234556789988 666654443
No 402
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=34.01 E-value=2.6e+02 Score=22.84 Aligned_cols=96 Identities=13% Similarity=0.105 Sum_probs=51.9
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcce--EEeCCC-CCCCCCCHHHHHHHHHHhCCCC--
Q 022348 181 RPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDC--FLAGDD-VKQKKPDPSIYVTAAKRLGISE-- 255 (298)
Q Consensus 181 ~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~--v~~~~~-~~~~KP~~~~~~~~~~~lgi~~-- 255 (298)
.+...++++.+|+.|.+.+++-|-... ...+...+ .. .|. +.+.+. .+..+--+..++.+.+--....
T Consensus 92 ~~~~~~~l~~ik~~g~k~GlalnP~Tp-~~~i~~~l-~~-----~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~ 164 (220)
T PRK08883 92 SEHVDRTLQLIKEHGCQAGVVLNPATP-LHHLEYIM-DK-----VDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDES 164 (220)
T ss_pred cccHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHH-Hh-----CCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhc
Confidence 345788999999999999999887654 33333223 22 233 333332 1222334444444432111111
Q ss_pred -CcE-EEEecCh--hhHHHHHHcCCeEEEEcC
Q 022348 256 -KDC-LVVEDSV--IGLQAATRAGMACVITYT 283 (298)
Q Consensus 256 -~~~-~~vgD~~--~Di~~a~~aG~~~v~~~~ 283 (298)
-++ +.|+=+. .++....++|...+++.+
T Consensus 165 ~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGS 196 (220)
T PRK08883 165 GRDIRLEIDGGVKVDNIREIAEAGADMFVAGS 196 (220)
T ss_pred CCCeeEEEECCCCHHHHHHHHHcCCCEEEEeH
Confidence 122 3332223 488889999999875543
No 403
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=33.99 E-value=34 Score=22.94 Aligned_cols=19 Identities=26% Similarity=0.613 Sum_probs=15.0
Q ss_pred ccEEEEecCCccccchhHH
Q 022348 67 LQALIFDCDGVIIESEHLH 85 (298)
Q Consensus 67 ~k~viFD~DGTL~d~~~~~ 85 (298)
.-.|+.+-|||.++++..+
T Consensus 39 ~~~lvL~eDGT~Vd~EeyF 57 (79)
T cd06538 39 ISSLVLDEDGTGVDTEEFF 57 (79)
T ss_pred ccEEEEecCCcEEccHHHH
Confidence 3568999999999887543
No 404
>PRK06801 hypothetical protein; Provisional
Probab=33.96 E-value=3e+02 Score=23.58 Aligned_cols=99 Identities=15% Similarity=0.091 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCC-CC---CHHHHHHHHHHhCCCCCcE
Q 022348 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQK-KP---DPSIYVTAAKRLGISEKDC 258 (298)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~-KP---~~~~~~~~~~~lgi~~~~~ 258 (298)
-+.++|..-+++|+-+..+.-.+.+.++.+++-. .-.+ -..|+........ .+ -..+...++++..++ =+
T Consensus 5 ~~~~~l~~A~~~~yaV~Afn~~n~e~~~avi~AA-e~~~---~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vp--V~ 78 (286)
T PRK06801 5 SLANGLAHARKHGYALGAFNVLDSHFLRALFAAA-KQER---SPFIINIAEVHFKYISLESLVEAVKFEAARHDIP--VV 78 (286)
T ss_pred cHHHHHHHHHHCCceEEEEeeCCHHHHHHHHHHH-HHHC---CCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCC--EE
Confidence 3678999999999999999888888888877765 2222 1344433221111 11 223455556666664 35
Q ss_pred EEEecC--hhhHHHHHHcCCeEEEEcCCCch
Q 022348 259 LVVEDS--VIGLQAATRAGMACVITYTSSTA 287 (298)
Q Consensus 259 ~~vgD~--~~Di~~a~~aG~~~v~~~~~~~~ 287 (298)
++.+=+ ...++.|-.+|+..|++.+...+
T Consensus 79 lHlDH~~~~e~i~~Ai~~GftSVm~D~S~l~ 109 (286)
T PRK06801 79 LNLDHGLHFEAVVRALRLGFSSVMFDGSTLE 109 (286)
T ss_pred EECCCCCCHHHHHHHHHhCCcEEEEcCCCCC
Confidence 555433 35788888899999998776554
No 405
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=33.78 E-value=24 Score=29.72 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=62.7
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCC-ccccCcceEEeCC-----CCCCCCCCHHHHHHHHHHhC
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGM-ERFEGLDCFLAGD-----DVKQKKPDPSIYVTAAKRLG 252 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l-~~~~~fd~v~~~~-----~~~~~KP~~~~~~~~~~~lg 252 (298)
.-+|++.++|...-+. +.+.+.|.+.......++..+ .- ... +...+-.+ +...-| -+..+|
T Consensus 131 ~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Ya~~v~D~L-D~~~~i--~~~RlyR~~C~~~~g~yvK--------dls~~~ 198 (262)
T KOG1605|consen 131 RKRPHVDEFLSRVSKW-YELVLFTASLEVYADPLLDIL-DPDRKI--ISHRLYRDSCTLKDGNYVK--------DLSVLG 198 (262)
T ss_pred EcCCCHHHHHHHhHHH-HHHHHHHhhhHHHHHHHHHHc-cCCCCe--eeeeecccceEeECCcEEE--------Ecceec
Confidence 4567777777776666 667777777777676666655 22 111 22211111 111122 224667
Q ss_pred CCCCcEEEEecChhhHHHHHHcCCeEE-EEcCCCchhHh
Q 022348 253 ISEKDCLVVEDSVIGLQAATRAGMACV-ITYTSSTAEQV 290 (298)
Q Consensus 253 i~~~~~~~vgD~~~Di~~a~~aG~~~v-~~~~~~~~~~~ 290 (298)
-+..+++.|+|++.-..+=-..|++.- |..++...+-+
T Consensus 199 ~dL~~viIiDNsP~sy~~~p~NgIpI~sw~~d~~D~eLL 237 (262)
T KOG1605|consen 199 RDLSKVIIVDNSPQSYRLQPENGIPIKSWFDDPTDTELL 237 (262)
T ss_pred cCcccEEEEcCChHHhccCccCCCcccccccCCChHHHH
Confidence 788999999999999999889999965 77777644433
No 406
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=33.21 E-value=67 Score=23.12 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=22.2
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCC
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAAT 205 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~ 205 (298)
-.+++.+.++.++++|.++..+|+..
T Consensus 55 ~t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 55 NTEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45678899999999999999999754
No 407
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=33.09 E-value=72 Score=23.11 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=22.9
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCChh
Q 022348 181 RPGVLRLMDEAKAAGKKVAVCSAATKS 207 (298)
Q Consensus 181 ~pg~~~~l~~L~~~g~~i~i~S~~~~~ 207 (298)
.+.+.++++.++++|.++.++|++...
T Consensus 73 ~~~~~~~~~~a~~~g~~iv~iT~~~~~ 99 (139)
T cd05013 73 TKETVEAAEIAKERGAKVIAITDSANS 99 (139)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCCCC
Confidence 356788999999999999999998664
No 408
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=32.89 E-value=3.5e+02 Score=23.98 Aligned_cols=98 Identities=17% Similarity=0.161 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHH----HHHHHHHHhC-CCCCc
Q 022348 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPS----IYVTAAKRLG-ISEKD 257 (298)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~----~~~~~~~~lg-i~~~~ 257 (298)
-+.++|...+++|+-+..+.-.+.+.++.+++-. .-.+ -..|+........-.... +...++++.. ++ =
T Consensus 5 ~~k~lL~~A~~~~yAVgAfN~~n~e~~~avi~AA-ee~~---sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VP--V 78 (347)
T PRK09196 5 SLRQLLDHAAEHGYGVPAFNVNNLEQVQAIMEAA-DETD---SPVILQASAGARKYAGEPFLRHLILAAVEEYPHIP--V 78 (347)
T ss_pred cHHHHHHHHHHcCceEEEeeeCCHHHHHHHHHHH-HHhC---CCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCc--E
Confidence 3678899999999999999888888888887765 2222 234443322111111122 3333344442 43 3
Q ss_pred EEEEec--ChhhHHHHHHcCCeEEEEcCCCc
Q 022348 258 CLVVED--SVIGLQAATRAGMACVITYTSST 286 (298)
Q Consensus 258 ~~~vgD--~~~Di~~a~~aG~~~v~~~~~~~ 286 (298)
+++.+= +..++..|..+|++.||+.+...
T Consensus 79 alHLDHg~~~e~i~~ai~~GftSVMiDgS~l 109 (347)
T PRK09196 79 VMHQDHGNSPATCQRAIQLGFTSVMMDGSLK 109 (347)
T ss_pred EEECCCCCCHHHHHHHHHcCCCEEEecCCCC
Confidence 566653 34577888999999999998865
No 409
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=32.87 E-value=1.8e+02 Score=22.49 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=39.6
Q ss_pred EeCCChhhHHHHHHHHhCC-c--------c-ccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecCh
Q 022348 201 CSAATKSSVILCLENLIGM-E--------R-FEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSV 265 (298)
Q Consensus 201 ~S~~~~~~~~~~l~~~~~l-~--------~-~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~ 265 (298)
.|+++...++.+.+.+ +. . . ...+|.++.|.-+..++|++.+.+.+- + +..+++..||-..
T Consensus 7 ~TGNTkkvA~aI~~~l-~~~~~~~~~~~~~~~~~yD~i~lG~w~d~G~~d~~~~~fl~-~--l~~KkV~lF~T~G 77 (160)
T PF12641_consen 7 RTGNTKKVAEAIAEAL-GAKDIVSVEEPPEDLEDYDLIFLGFWIDKGTPDKDMKEFLK-K--LKGKKVALFGTAG 77 (160)
T ss_pred CCChHHHHHHHHHHHC-CCceeEeccccccCCCCCCEEEEEcCccCCCCCHHHHHHHH-H--ccCCeEEEEEecC
Confidence 3556666666666665 33 0 1 234688888877778899888776554 4 4567888888543
No 410
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=32.81 E-value=1.6e+02 Score=22.74 Aligned_cols=46 Identities=13% Similarity=0.194 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhCCCCCcEEEEecChhhHHHHHH-----cCCeEEEEcCCCc
Q 022348 241 PSIYVTAAKRLGISEKDCLVVEDSVIGLQAATR-----AGMACVITYTSST 286 (298)
Q Consensus 241 ~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~-----aG~~~v~~~~~~~ 286 (298)
...+...++++|......-.|.|+...+..+-+ .+...|++.|+..
T Consensus 24 ~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg 74 (163)
T TIGR02667 24 GQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTG 74 (163)
T ss_pred HHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 346777889999988888899999988776632 3678777777654
No 411
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=32.78 E-value=61 Score=21.33 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.9
Q ss_pred ChhHHHHHHHHHHCCCeEEEEe
Q 022348 181 RPGVLRLMDEAKAAGKKVAVCS 202 (298)
Q Consensus 181 ~pg~~~~l~~L~~~g~~i~i~S 202 (298)
.+++.++++.++++|.++..+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 4678999999999999999998
No 412
>PLN02151 trehalose-phosphatase
Probab=32.73 E-value=76 Score=28.13 Aligned_cols=36 Identities=8% Similarity=-0.028 Sum_probs=30.0
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHH
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLE 214 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~ 214 (298)
..+.|++.+.|+.|.+ +..++|+|+.....+...+.
T Consensus 119 A~~~~~~~~aL~~La~-~~~vaIvSGR~~~~l~~~~~ 154 (354)
T PLN02151 119 AFMSKKMRNTVRKLAK-CFPTAIVSGRCREKVSSFVK 154 (354)
T ss_pred ccCCHHHHHHHHHHhc-CCCEEEEECCCHHHHHHHcC
Confidence 3688999999999995 47999999999887776653
No 413
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=32.70 E-value=2.9e+02 Score=23.02 Aligned_cols=93 Identities=17% Similarity=0.212 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCC--CCHHHHHHHHHHhCCCCCcEE
Q 022348 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKK--PDPSIYVTAAKRLGISEKDCL 259 (298)
Q Consensus 182 pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~K--P~~~~~~~~~~~lgi~~~~~~ 259 (298)
+.+..+++.|++.|++++|==-+....-...+.++ ..+..+ +|.-+..+-....+ .--+.+-.+++++|+. ++
T Consensus 136 ~~~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~l-~~d~iK-ID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~---vv 210 (256)
T COG2200 136 DTALALLRQLRELGVRIALDDFGTGYSSLSYLKRL-PPDILK-IDRSFVRDLETDARDQAIVRAIVALAHKLGLT---VV 210 (256)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHhhC-CCCeEE-ECHHHHhhcccCcchHHHHHHHHHHHHHCCCE---EE
Confidence 35778999999999999986544444444455554 443221 23222222111111 1123455556777774 34
Q ss_pred EEe-cChhhHHHHHHcCCeEE
Q 022348 260 VVE-DSVIGLQAATRAGMACV 279 (298)
Q Consensus 260 ~vg-D~~~Di~~a~~aG~~~v 279 (298)
+=| .+...++.++..|+..+
T Consensus 211 aEGVEt~~ql~~L~~~G~~~~ 231 (256)
T COG2200 211 AEGVETEEQLDLLRELGCDYL 231 (256)
T ss_pred EeecCCHHHHHHHHHcCCCeE
Confidence 444 56679999999999977
No 414
>PRK08304 stage V sporulation protein AD; Validated
Probab=32.62 E-value=1.5e+02 Score=25.97 Aligned_cols=67 Identities=19% Similarity=0.252 Sum_probs=41.6
Q ss_pred hCCccccCcceEEeCCCCCCC---CCCH----HHHHHHHHHhCCCCC--cEEEEecChhh----HHHHHHcCCeEEEEcC
Q 022348 217 IGMERFEGLDCFLAGDDVKQK---KPDP----SIYVTAAKRLGISEK--DCLVVEDSVIG----LQAATRAGMACVITYT 283 (298)
Q Consensus 217 ~~l~~~~~fd~v~~~~~~~~~---KP~~----~~~~~~~~~lgi~~~--~~~~vgD~~~D----i~~a~~aG~~~v~~~~ 283 (298)
+.+..+ ||.++.-.-.+.. |... +..+.++++-|++++ +.+++||..+- ...++..|+.+.-+++
T Consensus 32 gpl~~~--fd~~~~d~~~Ge~swEkAeseLa~eAa~~ALekAGI~~~DID~lI~Gdll~Q~~sAs~vA~~LGIPa~dV~g 109 (337)
T PRK08304 32 GPLGKY--FDKILDDDYCGEKSWEKAERKMMEDAIQQALQKANLKKSDIDYLLAGDLLNQIISANFAARELGIPFLGLYG 109 (337)
T ss_pred CCChhh--CCeEecccccCCcCccccHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCcchHHHHHHHhCCcEEEEec
Confidence 466666 8887754444422 2222 456667777799886 57899987632 2345677887665555
Q ss_pred CC
Q 022348 284 SS 285 (298)
Q Consensus 284 ~~ 285 (298)
..
T Consensus 110 AC 111 (337)
T PRK08304 110 AC 111 (337)
T ss_pred cC
Confidence 43
No 415
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=32.24 E-value=49 Score=26.94 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=27.6
Q ss_pred CCCCCChhHHHHHHHHHHCCCeEEEEeCCChhhH
Q 022348 176 GTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSV 209 (298)
Q Consensus 176 ~~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~ 209 (298)
+.....++..++++.|++.|+++.+=||++....
T Consensus 80 GEP~~~~~l~~Ll~~l~~~g~~~~lETngti~~~ 113 (212)
T COG0602 80 GEPLLQPNLLELLELLKRLGFRIALETNGTIPVW 113 (212)
T ss_pred CcCCCcccHHHHHHHHHhCCceEEecCCCCcccc
Confidence 3334567999999999999999999999876533
No 416
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=32.14 E-value=1e+02 Score=25.16 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=24.3
Q ss_pred CCCCCChhH-HHHHHHHHHCCCeEEEEeCCC
Q 022348 176 GTVEPRPGV-LRLMDEAKAAGKKVAVCSAAT 205 (298)
Q Consensus 176 ~~~~~~pg~-~~~l~~L~~~g~~i~i~S~~~ 205 (298)
+...+.++. .++++.+++.|+++.+.||+.
T Consensus 74 GEPll~~~~~~~li~~~~~~g~~~~i~TNG~ 104 (235)
T TIGR02493 74 GEPLLQPEFLSELFKACKELGIHTCLDTSGF 104 (235)
T ss_pred cccccCHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 344567774 589999999999999999994
No 417
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=32.09 E-value=1.3e+02 Score=26.24 Aligned_cols=84 Identities=17% Similarity=0.232 Sum_probs=47.6
Q ss_pred cCCCCCChhHHHHHHHHHHCCCe-EEEEeCCChh-hHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhC
Q 022348 175 SGTVEPRPGVLRLMDEAKAAGKK-VAVCSAATKS-SVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLG 252 (298)
Q Consensus 175 ~~~~~~~pg~~~~l~~L~~~g~~-i~i~S~~~~~-~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lg 252 (298)
.+...+..++.+++..+++.++. +.+-||+... .....|+.. |+.+. .++-| --+++.|.++- ..|
T Consensus 67 GGEPllR~dl~eIi~~l~~~~~~~islTTNG~~L~~~a~~Lk~A-Gl~rV-----NVSLD-----sld~e~f~~IT-~~~ 134 (322)
T COG2896 67 GGEPLLRKDLDEIIARLARLGIRDLSLTTNGVLLARRAADLKEA-GLDRV-----NVSLD-----SLDPEKFRKIT-GRD 134 (322)
T ss_pred CCCchhhcCHHHHHHHHhhcccceEEEecchhhHHHHHHHHHHc-CCcEE-----Eeecc-----cCCHHHHHHHh-CCC
Confidence 44556888999999999987654 5555566532 122334444 55432 23222 23466677665 222
Q ss_pred CCCCcEEEEecChhhHHHHHHcCCe
Q 022348 253 ISEKDCLVVEDSVIGLQAATRAGMA 277 (298)
Q Consensus 253 i~~~~~~~vgD~~~Di~~a~~aG~~ 277 (298)
. .++| ...+++|..+|+.
T Consensus 135 ~-~~~V------l~GI~~A~~~Gl~ 152 (322)
T COG2896 135 R-LDRV------LEGIDAAVEAGLT 152 (322)
T ss_pred c-HHHH------HHHHHHHHHcCCC
Confidence 2 2232 3677888887776
No 418
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=32.05 E-value=21 Score=26.16 Aligned_cols=16 Identities=6% Similarity=0.036 Sum_probs=13.7
Q ss_pred cCCccEEEEecCCccc
Q 022348 64 SQSLQALIFDCDGVII 79 (298)
Q Consensus 64 ~~~~k~viFD~DGTL~ 79 (298)
...+..|+||+.+||-
T Consensus 42 ~~~P~iV~FDmK~Tld 57 (128)
T PRK13717 42 LNAPVTAAFNMKQTVD 57 (128)
T ss_pred cCCCeEEEEehHHHHH
Confidence 3468999999999986
No 419
>PLN02858 fructose-bisphosphate aldolase
Probab=31.87 E-value=3.5e+02 Score=29.10 Aligned_cols=101 Identities=16% Similarity=0.100 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCC---CCCCCHHHHHHHHHHhCCCCCcE
Q 022348 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVK---QKKPDPSIYVTAAKRLGISEKDC 258 (298)
Q Consensus 182 pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~---~~KP~~~~~~~~~~~lgi~~~~~ 258 (298)
--+.++|...+++|+-+..+.-.+.+.++.+++-. .-.. -..|+...... .+.+-..+...++++..++ =+
T Consensus 1100 v~~~~~l~~A~~~~yav~afn~~n~e~~~avi~aA-e~~~---sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vp--V~ 1173 (1378)
T PLN02858 1100 SSTKELLLNAEKGGYAVGAFNVYNLEGIEAVVAAA-EAEK---SPAILQVHPGALKQGGIPLVSCCIAAAEQASVP--IT 1173 (1378)
T ss_pred ccHHHHHHHHHHCCcEEEEEEeCCHHHHHHHHHHH-HHhC---CCEEEECCccHHhhcCHHHHHHHHHHHHHCCCC--EE
Confidence 45889999999999999998888888888877766 3222 23444433211 1111223345556666664 47
Q ss_pred EEEe--cChhhHHHHHHcCCeEEEEcCCCchh
Q 022348 259 LVVE--DSVIGLQAATRAGMACVITYTSSTAE 288 (298)
Q Consensus 259 ~~vg--D~~~Di~~a~~aG~~~v~~~~~~~~~ 288 (298)
+|.+ ++..++..|-.+|+..||+.+...+-
T Consensus 1174 lHLDHg~~~~~i~~ai~~Gf~SVM~DgS~l~~ 1205 (1378)
T PLN02858 1174 VHFDHGTSKHELLEALELGFDSVMVDGSHLSF 1205 (1378)
T ss_pred EECCCCCCHHHHHHHHHhCCCEEEEeCCCCCH
Confidence 7776 34578999999999999999876543
No 420
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.83 E-value=26 Score=32.16 Aligned_cols=15 Identities=33% Similarity=0.532 Sum_probs=13.3
Q ss_pred CCccEEEEecCCccc
Q 022348 65 QSLQALIFDCDGVII 79 (298)
Q Consensus 65 ~~~k~viFD~DGTL~ 79 (298)
...|+++.|+||||+
T Consensus 220 ~~kK~LVLDLDNTLW 234 (574)
T COG3882 220 KSKKALVLDLDNTLW 234 (574)
T ss_pred cccceEEEecCCccc
Confidence 368999999999996
No 421
>PRK08354 putative aminotransferase; Provisional
Probab=31.77 E-value=3.3e+02 Score=23.29 Aligned_cols=88 Identities=9% Similarity=-0.038 Sum_probs=49.5
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEE
Q 022348 181 RPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLV 260 (298)
Q Consensus 181 ~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~ 260 (298)
++++.+.+.+.. |.. .++|++....+...+..+ . . -|.|+ ...|.-..|..+++.+|... +.
T Consensus 42 ~~~l~~~ia~~~--~~~-I~vt~G~~~al~~~~~~~-~-~----gd~vl------v~~P~y~~~~~~~~~~g~~~---~~ 103 (311)
T PRK08354 42 YEWLEEEFSKLF--GEP-IVITAGITEALYLIGILA-L-R----DRKVI------IPRHTYGEYERVARFFAARI---IK 103 (311)
T ss_pred hHHHHHHHHHHH--CCC-EEECCCHHHHHHHHHHhh-C-C----CCeEE------EeCCCcHHHHHHHHHcCCEE---ee
Confidence 444444444332 444 567787776555444222 1 1 13333 35677778999999999865 45
Q ss_pred EecChhhHHHHHHcCCeEEEEcCCCch
Q 022348 261 VEDSVIGLQAATRAGMACVITYTSSTA 287 (298)
Q Consensus 261 vgD~~~Di~~a~~aG~~~v~~~~~~~~ 287 (298)
++.....++.+.. +...+++.+++++
T Consensus 104 ~~~d~~~l~~~~~-~~~~vi~~~P~NP 129 (311)
T PRK08354 104 GPNDPEKLEELVE-RNSVVFFCNPNNP 129 (311)
T ss_pred cCCCHHHHHHhhc-CCCEEEEecCCCC
Confidence 6666666655433 4455666665543
No 422
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=31.72 E-value=1.7e+02 Score=22.82 Aligned_cols=59 Identities=22% Similarity=0.226 Sum_probs=38.3
Q ss_pred EEeCCCCCCCC---CCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHH---cCCeEEEEcCCCc
Q 022348 228 FLAGDDVKQKK---PDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATR---AGMACVITYTSST 286 (298)
Q Consensus 228 v~~~~~~~~~K---P~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~---aG~~~v~~~~~~~ 286 (298)
+..++++..++ -....+...++++|+....+..|+|....+..+-+ .....|++.|+..
T Consensus 5 i~~GdEl~~G~i~d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G 69 (170)
T cd00885 5 IAIGDELLSGQIVDTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLG 69 (170)
T ss_pred EEECccccCCeEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 44455544332 23346677788889988888899999987766543 2566667666543
No 423
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=31.69 E-value=46 Score=27.32 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=7.4
Q ss_pred EEecCCccccc
Q 022348 71 IFDCDGVIIES 81 (298)
Q Consensus 71 iFD~DGTL~d~ 81 (298)
+||.||||.+.
T Consensus 1 ~lDyDGTL~p~ 11 (235)
T PF02358_consen 1 FLDYDGTLAPI 11 (235)
T ss_dssp EEE-TTTSS--
T ss_pred CcccCCccCCC
Confidence 68999999875
No 424
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=31.58 E-value=2.6e+02 Score=23.59 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=25.7
Q ss_pred HHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeC
Q 022348 187 LMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAG 231 (298)
Q Consensus 187 ~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~ 231 (298)
+-+.++++|+.+.+++.+.....+..++.+ --.+ +|.++..
T Consensus 23 Ie~~a~~~Gy~l~l~~t~~~~~~e~~i~~l-~~~~---vDGiI~~ 63 (279)
T PF00532_consen 23 IEQEAREHGYQLLLCNTGDDEEKEEYIELL-LQRR---VDGIILA 63 (279)
T ss_dssp HHHHHHHTTCEEEEEEETTTHHHHHHHHHH-HHTT---SSEEEEE
T ss_pred HHHHHHHcCCEEEEecCCCchHHHHHHHHH-HhcC---CCEEEEe
Confidence 345688999999887666555455666665 2212 5765544
No 425
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=31.51 E-value=2.8e+02 Score=22.48 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCC-hhhHHHHHHHHhCCccccCcceEEeCCCCCCCCC--------CHHHHHHHHHHhCC
Q 022348 183 GVLRLMDEAKAAGKKVAVCSAAT-KSSVILCLENLIGMERFEGLDCFLAGDDVKQKKP--------DPSIYVTAAKRLGI 253 (298)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~S~~~-~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP--------~~~~~~~~~~~lgi 253 (298)
.+.+++.+--.+|-.+.++-.+. .-..++++.+.+|+... ..|+...-+...-+ .-..-+.++.++++
T Consensus 26 kaa~lVAesi~n~g~i~~FG~GHShm~aeEv~yRAGGLa~~---~pIL~~plMLhega~ass~lErieg~~~~~l~~~~i 102 (243)
T COG4821 26 KAAKLVAESIMNDGRIYVFGSGHSHMLAEEVFYRAGGLAPI---KPILMEPLMLHEGAVASSYLERIEGYAKLFLHRLQI 102 (243)
T ss_pred HHHHHHHHHHhcCCEEEEecCchHHHHHHHHHhhcCCcccc---ccccCChhhhcccccccchhHhhhhHHHHHHHHhcC
Confidence 34455555445555566665444 44566677777666542 33333221111111 11234567888999
Q ss_pred CCCcEEEE----ecChhhHHHHH---HcCCeEEEEcC
Q 022348 254 SEKDCLVV----EDSVIGLQAAT---RAGMACVITYT 283 (298)
Q Consensus 254 ~~~~~~~v----gD~~~Di~~a~---~aG~~~v~~~~ 283 (298)
.+.++++| |-++--+++|+ +-|+..|.+.+
T Consensus 103 ~~~DVliviSnSGrNpvpie~A~~~rekGa~vI~vTS 139 (243)
T COG4821 103 RPNDVLIVISNSGRNPVPIEVAEYAREKGAKVIAVTS 139 (243)
T ss_pred CCCCEEEEEeCCCCCCcchHHHHHHHhcCCeEEEEeh
Confidence 99998876 33334666654 56888876654
No 426
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=31.30 E-value=3.3e+02 Score=23.19 Aligned_cols=50 Identities=8% Similarity=-0.136 Sum_probs=24.8
Q ss_pred cceEEeCCCCCCCCCCHHHHHHHHHHhCCC-CCcEEEEecChhhHHHHHHcCCeEE
Q 022348 225 LDCFLAGDDVKQKKPDPSIYVTAAKRLGIS-EKDCLVVEDSVIGLQAATRAGMACV 279 (298)
Q Consensus 225 fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~-~~~~~~vgD~~~Di~~a~~aG~~~v 279 (298)
++++++..+. -......++.+.|+. |+++-++|.+-.++.....-++.+|
T Consensus 239 ~~ai~~~~d~-----~A~g~~~al~~~g~~vP~disv~gfd~~~~~~~~~p~lttv 289 (328)
T PRK11303 239 PDALFTTSYT-----LLQGVLDVLLERPGELPSDLAIATFGDNELLDFLPCPVNAV 289 (328)
T ss_pred CCEEEEcCcH-----HHHHHHHHHHHcCCCCCCceEEEEeCChHHHhccCCCceEE
Confidence 5666665431 112333455566765 6777666654333333333355554
No 427
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=31.23 E-value=93 Score=26.69 Aligned_cols=100 Identities=17% Similarity=0.142 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCC--CCC--CCCCHHHHHHHHHHhCCCCCcE
Q 022348 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDD--VKQ--KKPDPSIYVTAAKRLGISEKDC 258 (298)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~--~~~--~KP~~~~~~~~~~~lgi~~~~~ 258 (298)
-+.++|+.-++.|+-+..+.-.+...+..+++-. .-.+ -..|+.... ... .+.-..+...++++.+++- +
T Consensus 4 ~~~~ll~~A~~~~yAV~AfN~~n~e~~~avi~AA-e~~~---sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPV--a 77 (287)
T PF01116_consen 4 NMKELLKKAKEGGYAVPAFNVYNLETARAVIEAA-EELN---SPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPV--A 77 (287)
T ss_dssp HHHHHHHHHHHHT-BEEEEE-SSHHHHHHHHHHH-HHTT---S-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEE--E
T ss_pred cHHHHHHHHHHCCCeEEEEeeCCHHHHHHHHHHH-HHhC---CCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCE--E
Confidence 3578888888899999888888888788777665 2221 123333221 000 0111234556666777654 6
Q ss_pred EEEe--cChhhHHHHHHcCCeEEEEcCCCchh
Q 022348 259 LVVE--DSVIGLQAATRAGMACVITYTSSTAE 288 (298)
Q Consensus 259 ~~vg--D~~~Di~~a~~aG~~~v~~~~~~~~~ 288 (298)
++.+ .+..++..|..+|++.|++.+...+-
T Consensus 78 lHLDH~~~~e~i~~ai~~GftSVM~DgS~l~~ 109 (287)
T PF01116_consen 78 LHLDHGKDFEDIKRAIDAGFTSVMIDGSALPF 109 (287)
T ss_dssp EEEEEE-SHHHHHHHHHHTSSEEEEE-TTS-H
T ss_pred eecccCCCHHHHHHHHHhCcccccccCCcCCH
Confidence 7775 44578899999999999998876543
No 428
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=31.05 E-value=3.9e+02 Score=23.93 Aligned_cols=89 Identities=20% Similarity=0.329 Sum_probs=53.6
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEE-----------------eCCChhhHHHHHHHHhCCccccC--cceEEeCCCCCCCC
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVC-----------------SAATKSSVILCLENLIGMERFEG--LDCFLAGDDVKQKK 238 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~-----------------S~~~~~~~~~~l~~~~~l~~~~~--fd~v~~~~~~~~~K 238 (298)
+.+-|-..-+|+.|++.|.+++.+ +.++...++..++.+ ....+.+ |-.++.-|...--+
T Consensus 220 ya~~P~~~tvl~~L~e~g~~vi~IGKI~DI~~~~Git~~~~~~~n~~~~d~tl~~~-~~~~~~~~vFtNlVdfD~~yGHR 298 (397)
T COG1015 220 YAVKPFAPTVLDKLKEAGRPVIAIGKIADIYAGQGITEKVKAVSNMDGMDVTLEEM-KTAEFNGLVFTNLVDFDSLYGHR 298 (397)
T ss_pred cccCCChhhHHHHHHHcCCceEEEeeHHhhhccccccccccCCCcHHHHHHHHHHH-hcCCCCcEEEEeeeecccccccc
Confidence 345555577899999999888765 234555666777776 4333211 22333334222345
Q ss_pred CCHHHHHHHHHHh---------CCCCCcEEEEe-cChhh
Q 022348 239 PDPSIYVTAAKRL---------GISEKDCLVVE-DSVIG 267 (298)
Q Consensus 239 P~~~~~~~~~~~l---------gi~~~~~~~vg-D~~~D 267 (298)
-++..|..+++.+ .+.+++++.|- |..||
T Consensus 299 rDv~gYa~aLe~FD~rL~e~~~~l~edDlLiiTADHGnD 337 (397)
T COG1015 299 RDVAGYAAALEEFDRRLPELIENLREDDLLIITADHGND 337 (397)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCCCEEEEecCCCCC
Confidence 5788888888875 45666777664 55444
No 429
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=30.94 E-value=2e+02 Score=21.42 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=17.2
Q ss_pred HHHHHhCCCCCcEEEEecChh---hHHHHHHcCC
Q 022348 246 TAAKRLGISEKDCLVVEDSVI---GLQAATRAGM 276 (298)
Q Consensus 246 ~~~~~lgi~~~~~~~vgD~~~---Di~~a~~aG~ 276 (298)
.++++.|+ ..++.|-|..+ -...++..|.
T Consensus 88 ~~~~~~~~--~~i~lVTs~~H~~Ra~~~~~~~~~ 119 (150)
T cd06259 88 ELLRERGI--RSVLLVTSAYHMPRALLIFRKAGL 119 (150)
T ss_pred HHHHhcCC--CeEEEECCHHHHHHHHHHHHHcCC
Confidence 34444555 56777777664 5555666666
No 430
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=30.85 E-value=3e+02 Score=22.47 Aligned_cols=85 Identities=14% Similarity=0.194 Sum_probs=46.2
Q ss_pred HHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCH-HHHHHHHHHhCCCCCcEEEEecC
Q 022348 186 RLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDP-SIYVTAAKRLGISEKDCLVVEDS 264 (298)
Q Consensus 186 ~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~-~~~~~~~~~lgi~~~~~~~vgD~ 264 (298)
+.+..|++.++ +.|+...+.+......+.+ -- .+++.+ |+...-|.+ +.++.+.+++. + +.||=+
T Consensus 5 ~~~~~l~~~~v-I~Vlr~~~~e~a~~~a~Al-i~---gGi~~I----EITl~sp~a~e~I~~l~~~~p---~--~lIGAG 70 (211)
T COG0800 5 KILSKLKAQPV-VPVIRGDDVEEALPLAKAL-IE---GGIPAI----EITLRTPAALEAIRALAKEFP---E--ALIGAG 70 (211)
T ss_pred HHHHHHHHCCe-eEEEEeCCHHHHHHHHHHH-HH---cCCCeE----EEecCCCCHHHHHHHHHHhCc---c--cEEccc
Confidence 45666777765 6777777766666555554 11 113332 112223332 45555555554 2 344433
Q ss_pred h----hhHHHHHHcCCeEEEEcCC
Q 022348 265 V----IGLQAATRAGMACVITYTS 284 (298)
Q Consensus 265 ~----~Di~~a~~aG~~~v~~~~~ 284 (298)
- .++..+..+|.++++.++-
T Consensus 71 TVL~~~q~~~a~~aGa~fiVsP~~ 94 (211)
T COG0800 71 TVLNPEQARQAIAAGAQFIVSPGL 94 (211)
T ss_pred cccCHHHHHHHHHcCCCEEECCCC
Confidence 2 4788888888887665544
No 431
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=30.73 E-value=96 Score=26.09 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=40.2
Q ss_pred ceEEeCCCCCCCC---CCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHc---CCeEEEEcCC
Q 022348 226 DCFLAGDDVKQKK---PDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRA---GMACVITYTS 284 (298)
Q Consensus 226 d~v~~~~~~~~~K---P~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~a---G~~~v~~~~~ 284 (298)
..+..++|+..++ .+...+..-+.++|++..+...|||.+.+|..+-+. -...|+++|+
T Consensus 5 ~iI~vG~ElL~G~ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGG 69 (255)
T COG1058 5 EIIAVGDELLSGRIVDTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGG 69 (255)
T ss_pred EEEEEccceecCceecchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCC
Confidence 4556666655443 345566666777899999999999999877654332 2666666663
No 432
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=30.65 E-value=74 Score=24.75 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.1
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChh
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKS 207 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~ 207 (298)
.-.+++.++++.+|++|.++..+|+....
T Consensus 112 G~t~~~i~~~~~ak~~Ga~vI~IT~~~~s 140 (177)
T cd05006 112 GNSPNVLKALEAAKERGMKTIALTGRDGG 140 (177)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 35578999999999999999999998654
No 433
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=30.56 E-value=3.7e+02 Score=23.47 Aligned_cols=94 Identities=14% Similarity=0.047 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCChh-hHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEE
Q 022348 183 GVLRLMDEAKAAGKKVAVCSAATKS-SVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVV 261 (298)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~S~~~~~-~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~v 261 (298)
...++++.|.+.|+.+.++-+.... ..+.+.+.+ +-.. ...++. -.++.+-.-...++++. -++|
T Consensus 201 ~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~-~~~~---~~~~~~----l~g~~sL~el~ali~~a------~l~I 266 (348)
T PRK10916 201 HYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAAL-NTEQ---QAWCRN----LAGETQLEQAVILIAAC------KAIV 266 (348)
T ss_pred HHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhc-cccc---ccceee----ccCCCCHHHHHHHHHhC------CEEE
Confidence 4567888888778877665433222 223333222 1110 001110 11343333333333332 2688
Q ss_pred ecChhhHHHHHHcCCeEEEEcCCCchhHh
Q 022348 262 EDSVIGLQAATRAGMACVITYTSSTAEQV 290 (298)
Q Consensus 262 gD~~~Di~~a~~aG~~~v~~~~~~~~~~~ 290 (298)
|....-+.+|.+.|.++|.+.|+.++..+
T Consensus 267 ~nDTGp~HlAaA~g~P~valfGpt~p~~~ 295 (348)
T PRK10916 267 TNDSGLMHVAAALNRPLVALYGPSSPDFT 295 (348)
T ss_pred ecCChHHHHHHHhCCCEEEEECCCCcccc
Confidence 87778899999999999999988766543
No 434
>PRK10595 SOS cell division inhibitor; Provisional
Probab=30.53 E-value=1.1e+02 Score=23.72 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=24.3
Q ss_pred HHHHHHHHhCCCCCcEEEEe-cCh-hhHHHHHH----cCCeEEEEc
Q 022348 243 IYVTAAKRLGISEKDCLVVE-DSV-IGLQAATR----AGMACVITY 282 (298)
Q Consensus 243 ~~~~~~~~lgi~~~~~~~vg-D~~-~Di~~a~~----aG~~~v~~~ 282 (298)
.+...+...|+++++++.|- +.. .-+.++++ -++..|+.|
T Consensus 68 p~~~~L~~~Gl~l~rvl~v~~~~~~d~Lwa~EqaLrsG~~~aVL~W 113 (164)
T PRK10595 68 LSREWLQASGLPLTKVMQLSQLSPCHTVEAMERALRTGNYSVVLGW 113 (164)
T ss_pred CCHHHHHHcCCCcccEEEEecCCcHHHHHHHHHHHhhCCCcEEEEC
Confidence 44557778899988888884 333 33333333 355666666
No 435
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=30.36 E-value=1.1e+02 Score=24.68 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=7.5
Q ss_pred HHHHHHHCCCeEEEE
Q 022348 187 LMDEAKAAGKKVAVC 201 (298)
Q Consensus 187 ~l~~L~~~g~~i~i~ 201 (298)
+.+.|++.|+.+..+
T Consensus 3 l~~~l~~~G~~~~~~ 17 (231)
T PF02602_consen 3 LAALLRALGAEVIEL 17 (231)
T ss_dssp HHHHHHHTTEEEEEE
T ss_pred HHHHHHHCCCcEEEE
Confidence 444555555554443
No 436
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=30.19 E-value=3.6e+02 Score=23.78 Aligned_cols=93 Identities=22% Similarity=0.213 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHC-CCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCC-CHHHHHHHHHHhCCCCCcEEE
Q 022348 183 GVLRLMDEAKAA-GKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKP-DPSIYVTAAKRLGISEKDCLV 260 (298)
Q Consensus 183 g~~~~l~~L~~~-g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP-~~~~~~~~~~~lgi~~~~~~~ 260 (298)
.+.++|..|.+. ++++.+.--+....-..+.+.+ ..+ +.+... +| ...-|..+++.- .++
T Consensus 201 ~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l---~~~---~~v~~~------~~l~~~~~l~ll~~a------~~v 262 (346)
T PF02350_consen 201 QILEALKALAERQNVPVIFPLHNNPRGSDIIIEKL---KKY---DNVRLI------EPLGYEEYLSLLKNA------DLV 262 (346)
T ss_dssp HHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHH---TT----TTEEEE----------HHHHHHHHHHE------SEE
T ss_pred HHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHh---ccc---CCEEEE------CCCCHHHHHHHHhcc------eEE
Confidence 566677777776 5555444333333233333333 221 122111 22 122344444433 368
Q ss_pred EecChhhHH-HHHHcCCeEEEEcCCCchhHhhhcC
Q 022348 261 VEDSVIGLQ-AATRAGMACVITYTSSTAEQVRIID 294 (298)
Q Consensus 261 vgD~~~Di~-~a~~aG~~~v~~~~~~~~~~~~~~~ 294 (298)
||||. .+. .|-..|.+||.+-...+..+....+
T Consensus 263 vgdSs-GI~eEa~~lg~P~v~iR~~geRqe~r~~~ 296 (346)
T PF02350_consen 263 VGDSS-GIQEEAPSLGKPVVNIRDSGERQEGRERG 296 (346)
T ss_dssp EESSH-HHHHHGGGGT--EEECSSS-S-HHHHHTT
T ss_pred EEcCc-cHHHHHHHhCCeEEEecCCCCCHHHHhhc
Confidence 99999 888 9999999999775555555544443
No 437
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=30.15 E-value=3e+02 Score=22.38 Aligned_cols=98 Identities=13% Similarity=0.109 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEe
Q 022348 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVE 262 (298)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vg 262 (298)
...++++.|.+.|++++++- +..+..+...+.+.....- ..+.. .++-+-.-+..+++.. + ++||
T Consensus 125 ~~~~l~~~l~~~~~~vvl~g-~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~l~e~~ali~~a-----~-~~I~ 189 (247)
T PF01075_consen 125 KWAELIERLKERGYRVVLLG-GPEEQEKEIADQIAAGLQN---PVINL-----AGKTSLRELAALISRA-----D-LVIG 189 (247)
T ss_dssp HHHHHHHHHCCCT-EEEE---SSHHHHHHHHHHHHTTHTT---TTEEE-----TTTS-HHHHHHHHHTS-----S-EEEE
T ss_pred HHHHHHHHHHhhCceEEEEc-cchHHHHHHHHHHHHhccc---ceEee-----cCCCCHHHHHHHHhcC-----C-EEEe
Confidence 45778889999886665554 4333233344333222110 01111 1222322233333332 2 5666
Q ss_pred cChhhHHHHHHcCCeEEEEcCCCchhHhhhcCC
Q 022348 263 DSVIGLQAATRAGMACVITYTSSTAEQVRIIDP 295 (298)
Q Consensus 263 D~~~Di~~a~~aG~~~v~~~~~~~~~~~~~~~~ 295 (298)
-.-.-+..|...|.++|.+.++..+..+...++
T Consensus 190 ~Dtg~~HlA~a~~~p~v~lfg~t~~~~~~P~~~ 222 (247)
T PF01075_consen 190 NDTGPMHLAAALGTPTVALFGPTNPERWGPYGE 222 (247)
T ss_dssp ESSHHHHHHHHTT--EEEEESSS-HHHHS-TSS
T ss_pred cCChHHHHHHHHhCCEEEEecCCCHHHhCCCCC
Confidence 666678888999999999999988877665543
No 438
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=30.12 E-value=36 Score=22.07 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=14.2
Q ss_pred HHHHHHHHhCCCCCcEEEEecC
Q 022348 243 IYVTAAKRLGISEKDCLVVEDS 264 (298)
Q Consensus 243 ~~~~~~~~lgi~~~~~~~vgD~ 264 (298)
+....|++.|+.+.+++.|||-
T Consensus 44 Gv~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T PF09269_consen 44 GVEKALRKAGAKEGDTVRIGDY 65 (69)
T ss_dssp THHHHHHTTT--TT-EEEETTE
T ss_pred CHHHHHHHcCCCCCCEEEEcCE
Confidence 3445677788999999999984
No 439
>PRK06856 DNA polymerase III subunit psi; Validated
Probab=30.01 E-value=1.3e+02 Score=22.29 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=40.6
Q ss_pred HHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEe
Q 022348 190 EAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVE 262 (298)
Q Consensus 190 ~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vg 262 (298)
.|++-|+..+.+.+-....-+ . .+.--.....++.+++.... -+| .|..+++-+++++++|.++.
T Consensus 7 ~LqemGItqW~Lr~P~~L~g~-----~-~i~lp~~~rLliV~~~~~~~-~~~-L~~dVLrsl~L~~~q~~~lt 71 (128)
T PRK06856 7 LLQQLGITQWVLRRPGVLQGE-----I-AISLPEHIRLVIVAEELPAL-TDP-LLQDVLRSLTLSPDQVLCLT 71 (128)
T ss_pred HHHHcCCceEEecCccccCCC-----c-cccCCccceEEEEeCCCCcc-cCh-HHHHHHHHcCCCHHHeeeeC
Confidence 467778888888766543221 1 22211224556666654422 234 89999999999999988763
No 440
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=30.00 E-value=3.2e+02 Score=22.65 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=16.9
Q ss_pred CCChhHHHHHHHHHHCCCeEEEE
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVC 201 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~ 201 (298)
++.++..++.+.|++.|..+..+
T Consensus 10 Rp~~~~~~l~~~l~~~G~~~~~~ 32 (255)
T PRK05752 10 RPAEECAALAASLAEAGIFSSSL 32 (255)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEc
Confidence 45667777888888888776665
No 441
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=29.93 E-value=1.8e+02 Score=25.60 Aligned_cols=90 Identities=12% Similarity=0.177 Sum_probs=48.1
Q ss_pred HHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHH-------hCCCCCc
Q 022348 185 LRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKR-------LGISEKD 257 (298)
Q Consensus 185 ~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~-------lgi~~~~ 257 (298)
..++.+|+++|+.+.|.+-. ...+...++.+ |++ .+..|... ..+ .......+.+. ....| +
T Consensus 17 k~~I~eL~~~GheV~it~R~-~~~~~~LL~~y-g~~------y~~iG~~g-~~~-~~Kl~~~~~R~~~l~~~~~~~~p-D 85 (335)
T PF04007_consen 17 KNIIRELEKRGHEVLITARD-KDETEELLDLY-GID------YIVIGKHG-DSL-YGKLLESIERQYKLLKLIKKFKP-D 85 (335)
T ss_pred HHHHHHHHhCCCEEEEEEec-cchHHHHHHHc-CCC------eEEEcCCC-CCH-HHHHHHHHHHHHHHHHHHHhhCC-C
Confidence 46788999999988776554 44466666655 553 33333221 111 11111111111 12233 4
Q ss_pred EEEEecChhhHHHHHHcCCeEEEEcCCC
Q 022348 258 CLVVEDSVIGLQAATRAGMACVITYTSS 285 (298)
Q Consensus 258 ~~~vgD~~~Di~~a~~aG~~~v~~~~~~ 285 (298)
+++-..++.-...|...|+++|.+.+..
T Consensus 86 v~is~~s~~a~~va~~lgiP~I~f~D~e 113 (335)
T PF04007_consen 86 VAISFGSPEAARVAFGLGIPSIVFNDTE 113 (335)
T ss_pred EEEecCcHHHHHHHHHhCCCeEEEecCc
Confidence 3443455555558888999999666643
No 442
>PRK13937 phosphoheptose isomerase; Provisional
Probab=29.88 E-value=85 Score=24.84 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=25.3
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhH
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSV 209 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~ 209 (298)
-.+.+.+.++.+|++|.++..+|+.....+
T Consensus 118 ~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L 147 (188)
T PRK13937 118 NSPNVLAALEKARELGMKTIGLTGRDGGKM 147 (188)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEeCCCCChh
Confidence 467899999999999999999999765533
No 443
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=29.67 E-value=8.9 Score=32.25 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=15.2
Q ss_pred CCccEEEEecCCccccch
Q 022348 65 QSLQALIFDCDGVIIESE 82 (298)
Q Consensus 65 ~~~k~viFD~DGTL~d~~ 82 (298)
..-|+++.|+|.||+.+.
T Consensus 87 ~~kk~lVLDLDeTLvHss 104 (262)
T KOG1605|consen 87 VGRKTLVLDLDETLVHSS 104 (262)
T ss_pred CCCceEEEeCCCcccccc
Confidence 356899999999999665
No 444
>PLN02423 phosphomannomutase
Probab=29.66 E-value=94 Score=25.81 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=26.8
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHH
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLE 214 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~ 214 (298)
.+.|...+.+++|+++ ++++++|+.....+...+.
T Consensus 24 ~i~~~~~~ai~~l~~~-i~fviaTGR~~~~~~~~~~ 58 (245)
T PLN02423 24 EATPEMLEFMKELRKV-VTVGVVGGSDLSKISEQLG 58 (245)
T ss_pred cCCHHHHHHHHHHHhC-CEEEEECCcCHHHHHHHhc
Confidence 4667888999999987 9999999986654544443
No 445
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=29.64 E-value=1.9e+02 Score=26.56 Aligned_cols=24 Identities=4% Similarity=0.106 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHC--CCeEEEEeCCCh
Q 022348 183 GVLRLMDEAKAA--GKKVAVCSAATK 206 (298)
Q Consensus 183 g~~~~l~~L~~~--g~~i~i~S~~~~ 206 (298)
.+.+++..+++. |+++.|.||+..
T Consensus 96 ~~~~~l~~~~~~~~~i~i~lsTNG~~ 121 (442)
T TIGR01290 96 KTFQTLELVARQLPDVKLCLSTNGLM 121 (442)
T ss_pred ccHHHHHHHHHhcCCCeEEEECCCCC
Confidence 367888888887 899999999963
No 446
>PF03603 DNA_III_psi: DNA polymerase III psi subunit; InterPro: IPR004615 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerization to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This family is the psi subunit, the small subunit of the DNA polymerase III holoenzyme in Escherichia coli and related species, whose exact function is not known. It appears to have a narrow taxonomic distribution, being restricted to the gammaproteobacteria.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication; PDB: 1EM8_B 3GLI_O 3SXU_B.
Probab=29.44 E-value=1.2e+02 Score=22.52 Aligned_cols=65 Identities=12% Similarity=0.204 Sum_probs=32.7
Q ss_pred HHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEe
Q 022348 190 EAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVE 262 (298)
Q Consensus 190 ~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vg 262 (298)
.|++-|+..+.+..-....-.. .. .+. .....++.+++..... ++ .|..+++.+++++++++++.
T Consensus 8 ~LqeMGItqW~Lr~P~~L~g~~---~i-~lp--~~~rLliVs~~~p~~~-~~-L~~dVLrsl~L~~~q~~~lt 72 (128)
T PF03603_consen 8 LLQEMGITQWQLRRPEVLQGEI---AI-SLP--ESCRLLIVSDELPQLD-DP-LFQDVLRSLKLTPEQVLHLT 72 (128)
T ss_dssp HHHHCT--EEEES-GGGTS--S-----------TT--EEEE-SS---TT-SH-HHHHHHHHTT--GGGEEEE-
T ss_pred HHHHcCCCeEEeCCccccCCCc---cc-cCc--ccceEEEEeCCCCCcc-Ch-HHHHHHHHcCCCHHHhhccC
Confidence 5778888888887654332211 11 222 2256777777655332 34 99999999999999988874
No 447
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=29.32 E-value=4.1e+02 Score=23.59 Aligned_cols=97 Identities=15% Similarity=0.124 Sum_probs=61.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCC-CCCC---HHHHHHHHHHhC-CCCCcE
Q 022348 184 VLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQ-KKPD---PSIYVTAAKRLG-ISEKDC 258 (298)
Q Consensus 184 ~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~-~KP~---~~~~~~~~~~lg-i~~~~~ 258 (298)
+.++|...+++|+-+..+.-.+.+.++.+++-. .-.. -..|+....... .-+. ..+...++++.. ++ =+
T Consensus 4 ~k~iL~~A~~~~yAV~AfN~~n~e~~~aii~AA-Ee~~---sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VP--Va 77 (347)
T TIGR01521 4 MRQLLDHAAEFGYGVPAFNVNNMEQMRAIMEAA-DKTD---SPVILQASRGARSYAGAPFLRHLILAAIEEYPHIP--VV 77 (347)
T ss_pred HHHHHHHHHHcCceEEEEeeCCHHHHHHHHHHH-HHhC---CCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCc--EE
Confidence 578899999999999999888888888887766 2222 134443322111 1111 123344444442 43 36
Q ss_pred EEEec--ChhhHHHHHHcCCeEEEEcCCCc
Q 022348 259 LVVED--SVIGLQAATRAGMACVITYTSST 286 (298)
Q Consensus 259 ~~vgD--~~~Di~~a~~aG~~~v~~~~~~~ 286 (298)
++.+= +..++..|..+|++.||+.+...
T Consensus 78 lHLDHg~~~e~i~~Ai~~GFtSVMiDgS~l 107 (347)
T TIGR01521 78 MHQDHGNSPATCQRAIQLGFTSVMMDGSLR 107 (347)
T ss_pred EECCCCCCHHHHHHHHHcCCCEEeecCcCC
Confidence 66653 34688889999999999998864
No 448
>PF03020 LEM: LEM domain; InterPro: IPR003887 The LEM domain is found in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin []. Defects in the emerin gene are a cause of Emery-Dreifuss muscular dystrophy, an X-linked disorder characterised by early contractures, muscle wasting, weakness and cardiomyopathy.; GO: 0005635 nuclear envelope; PDB: 2ODG_C 2ODC_I 1JEI_A 1H9F_A 1GJJ_A.
Probab=29.00 E-value=7.7 Score=22.63 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=18.3
Q ss_pred HHHHHHHHCCCeEEEEeCCChhhHHHHHHHH
Q 022348 186 RLMDEAKAAGKKVAVCSAATKSSVILCLENL 216 (298)
Q Consensus 186 ~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~ 216 (298)
++..+|++.|+..+-+|...+......|..+
T Consensus 10 ELr~~L~~~G~~~GPIt~tTR~vY~kkL~kl 40 (43)
T PF03020_consen 10 ELREELREYGEPPGPITPTTRKVYEKKLAKL 40 (43)
T ss_dssp CCHHCCCCCT-S-----CCCHHHHHHHCHHH
T ss_pred HHHHHHHHcCCCCCCCCcccHHHHHHHHHHH
Confidence 4567788899999999998888776666554
No 449
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=28.99 E-value=2.6e+02 Score=22.78 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=41.8
Q ss_pred HHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCC-----CCCCCCCHHHHHHHHHHhCCCCCcEE
Q 022348 185 LRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDD-----VKQKKPDPSIYVTAAKRLGISEKDCL 259 (298)
Q Consensus 185 ~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~-----~~~~KP~~~~~~~~~~~lgi~~~~~~ 259 (298)
.+.++.+++.|.+++..-+.. ......+ ... .|.|+.... +|..- ....|..+++++|+.+ +++
T Consensus 68 ~~~i~~~~~~~kpVia~~~~~-~sggy~l------asa--ad~I~a~p~~~vg~iGv~~-~~~~~~~ll~klGv~~-~~~ 136 (222)
T cd07018 68 RQALERFRASGKPVIAYADGY-SQGQYYL------ASA--ADEIYLNPSGSVELTGLSA-ETLFFKGLLDKLGVEV-QVF 136 (222)
T ss_pred HHHHHHHHHhCCeEEEEeCCC-Cchhhhh------hhh--CCEEEECCCceEEeeccch-hhhhHHHHHHHcCCcE-EEE
Confidence 566777787778887766542 2122222 211 455555432 22221 2335888999999986 567
Q ss_pred EEecChhh
Q 022348 260 VVEDSVIG 267 (298)
Q Consensus 260 ~vgD~~~D 267 (298)
.+|+..+.
T Consensus 137 ~~G~~K~~ 144 (222)
T cd07018 137 RVGEYKSA 144 (222)
T ss_pred EEeccccc
Confidence 88887543
No 450
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=28.89 E-value=84 Score=22.99 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=23.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCC
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAAT 205 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~ 205 (298)
..+|-+.+++++.++.|+++++|.-+-
T Consensus 59 ~~~~~l~~~~~~a~e~GVk~yvCe~s~ 85 (120)
T COG2044 59 PNFPPLEELIKQAIEAGVKIYVCEQSL 85 (120)
T ss_pred CCCCCHHHHHHHHHHcCCEEEEEcchh
Confidence 566899999999999999999997553
No 451
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.57 E-value=3.3e+02 Score=22.35 Aligned_cols=88 Identities=10% Similarity=0.013 Sum_probs=43.1
Q ss_pred HHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCH-HHHHHHHHHhCCCCCcEEEEecC
Q 022348 186 RLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDP-SIYVTAAKRLGISEKDCLVVEDS 264 (298)
Q Consensus 186 ~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~-~~~~~~~~~lgi~~~~~~~vgD~ 264 (298)
++++.|.+.++ +.|+.+.+.+......+.+ --..+..++..+. -|.. +.++.+.++++-...+ +.||=+
T Consensus 7 ~~~~~l~~~~v-i~Vvr~~~~~~a~~~~~al-~~gGi~~iEiT~~-------tp~a~~~i~~l~~~~~~~~p~-~~vGaG 76 (222)
T PRK07114 7 AVLTAMKATGM-VPVFYHADVEVAKKVIKAC-YDGGARVFEFTNR-------GDFAHEVFAELVKYAAKELPG-MILGVG 76 (222)
T ss_pred HHHHHHHhCCE-EEEEEcCCHHHHHHHHHHH-HHCCCCEEEEeCC-------CCcHHHHHHHHHHHHHhhCCC-eEEeeE
Confidence 45666676655 6777777777666666655 1111111232221 1221 2333443344322112 334432
Q ss_pred h----hhHHHHHHcCCeEEEEcC
Q 022348 265 V----IGLQAATRAGMACVITYT 283 (298)
Q Consensus 265 ~----~Di~~a~~aG~~~v~~~~ 283 (298)
. .+++.|..+|.++++.++
T Consensus 77 TVl~~e~a~~a~~aGA~FiVsP~ 99 (222)
T PRK07114 77 SIVDAATAALYIQLGANFIVTPL 99 (222)
T ss_pred eCcCHHHHHHHHHcCCCEEECCC
Confidence 2 466777777877766554
No 452
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=28.55 E-value=3.4e+02 Score=22.43 Aligned_cols=94 Identities=12% Similarity=0.102 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHCCC--eEEEEeCCChhhHHHHHHHHhCCccccCcce--EEeCCC-CCCCCCCHHHHHHHHHHhCC---
Q 022348 182 PGVLRLMDEAKAAGK--KVAVCSAATKSSVILCLENLIGMERFEGLDC--FLAGDD-VKQKKPDPSIYVTAAKRLGI--- 253 (298)
Q Consensus 182 pg~~~~l~~L~~~g~--~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~--v~~~~~-~~~~KP~~~~~~~~~~~lgi--- 253 (298)
+...++|+.+|+.|. +.+++=|-... ++.+...+ .. .|. +.+.+. .+..+..+..++++.+--..
T Consensus 103 ~~~~~~l~~Ik~~g~~~kaGlalnP~Tp-~~~i~~~l-~~-----vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~ 175 (228)
T PRK08091 103 HDLALTIEWLAKQKTTVLIGLCLCPETP-ISLLEPYL-DQ-----IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGN 175 (228)
T ss_pred ccHHHHHHHHHHCCCCceEEEEECCCCC-HHHHHHHH-hh-----cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHh
Confidence 457889999999998 99998887654 33333333 22 243 344433 23345566666666542111
Q ss_pred -CCCcEEEEecChh--hHHHHHHcCCeEEEEc
Q 022348 254 -SEKDCLVVEDSVI--GLQAATRAGMACVITY 282 (298)
Q Consensus 254 -~~~~~~~vgD~~~--Di~~a~~aG~~~v~~~ 282 (298)
..+-.+-|+=+.+ .+..+.++|..+++..
T Consensus 176 ~~~~~~IeVDGGI~~~ti~~l~~aGaD~~V~G 207 (228)
T PRK08091 176 RRVEKLISIDGSMTLELASYLKQHQIDWVVSG 207 (228)
T ss_pred cCCCceEEEECCCCHHHHHHHHHCCCCEEEEC
Confidence 1123366666554 7888899999976544
No 453
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=28.40 E-value=93 Score=24.24 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=25.3
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhH
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSV 209 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~ 209 (298)
-.+.+.++++.++++|.++..+|+.....+
T Consensus 87 ~t~~~i~~~~~ak~~g~~iI~IT~~~~s~l 116 (179)
T cd05005 87 ETSSVVNAAEKAKKAGAKVVLITSNPDSPL 116 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCCch
Confidence 457888999999999999999999876544
No 454
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=28.40 E-value=2.5e+02 Score=22.47 Aligned_cols=72 Identities=15% Similarity=0.095 Sum_probs=40.2
Q ss_pred HHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCC-----CCCCCCCHHHHHHHHHHhCCCCCcEE
Q 022348 185 LRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDD-----VKQKKPDPSIYVTAAKRLGISEKDCL 259 (298)
Q Consensus 185 ~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~-----~~~~KP~~~~~~~~~~~lgi~~~~~~ 259 (298)
.+.+..+++.+.++..+-++........+-.. .|.++.... +|..... ..|..+++++|+.+ +++
T Consensus 56 ~~~i~~~~~~~kpvia~v~g~~~s~g~~lA~a--------aD~i~a~~~s~~g~iG~~~~~-~~~~~~l~k~Gi~~-~~~ 125 (208)
T cd07023 56 YREIRRLRKAKKPVVASMGDVAASGGYYIAAA--------ADKIVANPTTITGSIGVIGQG-PNLEELLDKLGIER-DTI 125 (208)
T ss_pred HHHHHHHHhcCCcEEEEECCcchhHHHHHHhh--------CCEEEECCCCeEEeCcEEEec-CCHHHHHHhcCCce-EEE
Confidence 34566777777777776665443233223221 344544432 2222221 24778899999986 457
Q ss_pred EEecChh
Q 022348 260 VVEDSVI 266 (298)
Q Consensus 260 ~vgD~~~ 266 (298)
.+||..+
T Consensus 126 ~~g~~K~ 132 (208)
T cd07023 126 KSGPGKD 132 (208)
T ss_pred ecCCCcc
Confidence 8887653
No 455
>PRK03670 competence damage-inducible protein A; Provisional
Probab=28.36 E-value=1.8e+02 Score=24.38 Aligned_cols=59 Identities=10% Similarity=0.117 Sum_probs=40.1
Q ss_pred eEEeCCCCCCCC---CCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHH-c---CCeEEEEcCCC
Q 022348 227 CFLAGDDVKQKK---PDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATR-A---GMACVITYTSS 285 (298)
Q Consensus 227 ~v~~~~~~~~~K---P~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~-a---G~~~v~~~~~~ 285 (298)
.+..++++..++ -+...+...+..+|++...+..|+|...++..+-+ + +...|++.|+-
T Consensus 5 Ii~iGdEll~G~i~dtN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGl 70 (252)
T PRK03670 5 IITVGDELLTGNTVDSNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGL 70 (252)
T ss_pred EEEeCCcCcCCeEEehhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCc
Confidence 455666654443 23345666788899999889999999988877643 2 45667777653
No 456
>PRK10494 hypothetical protein; Provisional
Probab=28.23 E-value=2e+02 Score=24.16 Aligned_cols=41 Identities=12% Similarity=0.242 Sum_probs=27.3
Q ss_pred ceEEeCCCC-CCCCCCHHHHHHHHHHhCCCCCcEEEEecChh
Q 022348 226 DCFLAGDDV-KQKKPDPSIYVTAAKRLGISEKDCLVVEDSVI 266 (298)
Q Consensus 226 d~v~~~~~~-~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~ 266 (298)
..+++|... +...++.+.+...+.++|+++++++.-+.+.|
T Consensus 123 ~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~Ii~e~~s~n 164 (259)
T PRK10494 123 KLIFTGGAAKTNTVSTAEVGARVAQSLGVPREDIITLDLPKD 164 (259)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHeeeCCCCCC
Confidence 456666442 33456778888888899998877666555444
No 457
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=28.09 E-value=65 Score=20.90 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCCCCcEEEEecC
Q 022348 243 IYVTAAKRLGISEKDCLVVEDS 264 (298)
Q Consensus 243 ~~~~~~~~lgi~~~~~~~vgD~ 264 (298)
+....|++.|+.+.+++.|||-
T Consensus 44 Gv~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T TIGR03595 44 GVEDALRKAGAKDGDTVRIGDF 65 (69)
T ss_pred CHHHHHHHcCCCCCCEEEEccE
Confidence 3556778889999999999974
No 458
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=27.92 E-value=3.6e+02 Score=22.52 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=7.8
Q ss_pred HHHHHHHHHCCCeEEEEe
Q 022348 185 LRLMDEAKAAGKKVAVCS 202 (298)
Q Consensus 185 ~~~l~~L~~~g~~i~i~S 202 (298)
..+++.+++.|+++-++.
T Consensus 98 ~~l~~~l~~~~i~veiiP 115 (257)
T PRK15473 98 REQGEELTKRGIDFQVVP 115 (257)
T ss_pred HHHHHHHHHCCCCEEEeC
Confidence 344444444444444443
No 459
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=27.85 E-value=2.2e+02 Score=24.80 Aligned_cols=31 Identities=13% Similarity=0.200 Sum_probs=24.3
Q ss_pred CCCCCChhHHHHHHHHHHCCC--eEEEEeCCCh
Q 022348 176 GTVEPRPGVLRLMDEAKAAGK--KVAVCSAATK 206 (298)
Q Consensus 176 ~~~~~~pg~~~~l~~L~~~g~--~i~i~S~~~~ 206 (298)
+...++++..++++.+++.+. .+.+.||+..
T Consensus 70 GEPllr~dl~~li~~i~~~~~l~~i~itTNG~l 102 (329)
T PRK13361 70 GEPLVRRGCDQLVARLGKLPGLEELSLTTNGSR 102 (329)
T ss_pred cCCCccccHHHHHHHHHhCCCCceEEEEeChhH
Confidence 344577899999999998764 6889999864
No 460
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=27.85 E-value=91 Score=23.72 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=24.3
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChh
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKS 207 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~ 207 (298)
-.+.+.+.++.++++|.++..+|+....
T Consensus 91 ~t~~~~~~~~~a~~~g~~ii~iT~~~~s 118 (154)
T TIGR00441 91 NSKNVLKAIEAAKDKGMKTITLAGKDGG 118 (154)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 4578899999999999999999997654
No 461
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=27.69 E-value=3.4e+02 Score=23.40 Aligned_cols=15 Identities=13% Similarity=-0.086 Sum_probs=8.3
Q ss_pred HHHHHHHHHhhcCCC
Q 022348 85 HRQAYNDAFSHFNVR 99 (298)
Q Consensus 85 ~~~~~~~~~~~~~~~ 99 (298)
....+.+.+++.|..
T Consensus 77 ~~~gi~~~~~~~g~~ 91 (343)
T PRK10727 77 MVKAVEQVAYHTGNF 91 (343)
T ss_pred HHHHHHHHHHHcCCE
Confidence 344555666666643
No 462
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=27.52 E-value=3.2e+02 Score=21.87 Aligned_cols=92 Identities=17% Similarity=0.180 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEe---CCCCC--CCCCCHHHHHHHHHHhCCCCC
Q 022348 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLA---GDDVK--QKKPDPSIYVTAAKRLGISEK 256 (298)
Q Consensus 182 pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~---~~~~~--~~KP~~~~~~~~~~~lgi~~~ 256 (298)
.-..+++.++|+++ .+...=-++.+.... ...+ | ||.|-+ ++.-. ...|+-+.+..+.+. +++
T Consensus 79 ~~l~~li~~i~~~~-~l~MADist~ee~~~-A~~~-G------~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~-~~p-- 146 (192)
T PF04131_consen 79 ETLEELIREIKEKY-QLVMADISTLEEAIN-AAEL-G------FDIIGTTLSGYTPYTKGDGPDFELVRELVQA-DVP-- 146 (192)
T ss_dssp S-HHHHHHHHHHCT-SEEEEE-SSHHHHHH-HHHT-T-------SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT-TSE--
T ss_pred cCHHHHHHHHHHhC-cEEeeecCCHHHHHH-HHHc-C------CCEEEcccccCCCCCCCCCCCHHHHHHHHhC-CCc--
Confidence 45677899999997 444443233332222 2222 2 565532 22211 133444556665543 432
Q ss_pred cEEEEecC---hhhHHHHHHcCCeEEEEcCCCch
Q 022348 257 DCLVVEDS---VIGLQAATRAGMACVITYTSSTA 287 (298)
Q Consensus 257 ~~~~vgD~---~~Di~~a~~aG~~~v~~~~~~~~ 287 (298)
+..+.+ +.+...+-.+|...|++.+.-+.
T Consensus 147 --vIaEGri~tpe~a~~al~~GA~aVVVGsAITr 178 (192)
T PF04131_consen 147 --VIAEGRIHTPEQAAKALELGAHAVVVGSAITR 178 (192)
T ss_dssp --EEEESS--SHHHHHHHHHTT-SEEEE-HHHH-
T ss_pred --EeecCCCCCHHHHHHHHhcCCeEEEECcccCC
Confidence 444433 35777777889999988765443
No 463
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=27.47 E-value=4.1e+02 Score=23.00 Aligned_cols=87 Identities=18% Similarity=0.197 Sum_probs=52.0
Q ss_pred HHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEE-eCCCC-CC--CCCCHHHHHHHHHHhCCCCCcEEE
Q 022348 185 LRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFL-AGDDV-KQ--KKPDPSIYVTAAKRLGISEKDCLV 260 (298)
Q Consensus 185 ~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~-~~~~~-~~--~KP~~~~~~~~~~~lgi~~~~~~~ 260 (298)
.++++++|+.|+++.... .+.... ..+++. |. |.++ .+.+- ++ ..+....+..+.+..+++ ++.
T Consensus 99 ~~~i~~lk~~g~~v~~~v-~s~~~a-~~a~~~-Ga------D~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iP---via 166 (307)
T TIGR03151 99 GKYIPRLKENGVKVIPVV-ASVALA-KRMEKA-GA------DAVIAEGMESGGHIGELTTMALVPQVVDAVSIP---VIA 166 (307)
T ss_pred HHHHHHHHHcCCEEEEEc-CCHHHH-HHHHHc-CC------CEEEEECcccCCCCCCCcHHHHHHHHHHHhCCC---EEE
Confidence 358899999998765433 333323 333343 43 4443 33222 21 224456667777766653 677
Q ss_pred EecCh--hhHHHHHHcCCeEEEEcC
Q 022348 261 VEDSV--IGLQAATRAGMACVITYT 283 (298)
Q Consensus 261 vgD~~--~Di~~a~~aG~~~v~~~~ 283 (298)
-|+-. .|+..+-..|...|++.+
T Consensus 167 aGGI~~~~~~~~al~~GA~gV~iGt 191 (307)
T TIGR03151 167 AGGIADGRGMAAAFALGAEAVQMGT 191 (307)
T ss_pred ECCCCCHHHHHHHHHcCCCEeecch
Confidence 77544 588888889999887654
No 464
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=27.39 E-value=4.8e+02 Score=23.83 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=12.0
Q ss_pred EEEecChhhHHHHHHcCCeEE
Q 022348 259 LVVEDSVIGLQAATRAGMACV 279 (298)
Q Consensus 259 ~~vgD~~~Di~~a~~aG~~~v 279 (298)
+++|.+.. -..|++.|++.+
T Consensus 376 liig~s~~-k~~A~~l~ip~i 395 (432)
T TIGR01285 376 LLITNSHG-RALAQRLALPLV 395 (432)
T ss_pred EEEECcch-HHHHHHcCCCEE
Confidence 55666633 556666777654
No 465
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=27.22 E-value=44 Score=22.39 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=14.0
Q ss_pred ccEEEEecCCccccchhH
Q 022348 67 LQALIFDCDGVIIESEHL 84 (298)
Q Consensus 67 ~k~viFD~DGTL~d~~~~ 84 (298)
.-.++++-|||+++.+..
T Consensus 40 ~~~lvL~eDGT~VddEey 57 (78)
T PF02017_consen 40 PVRLVLEEDGTEVDDEEY 57 (78)
T ss_dssp TCEEEETTTTCBESSCHH
T ss_pred CcEEEEeCCCcEEccHHH
Confidence 345788999999997754
No 466
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=26.99 E-value=3.1e+02 Score=21.49 Aligned_cols=63 Identities=10% Similarity=0.026 Sum_probs=28.9
Q ss_pred eEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEEecCh
Q 022348 197 KVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSV 265 (298)
Q Consensus 197 ~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~ 265 (298)
++.++|.++.. +++.++.. .- -.+-.++-.|.-.+..-.-+++.+.+++... +| -.+||+|..
T Consensus 1 kVIlvTDGD~~-A~ravE~a-a~--~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~-DP-V~VMfDD~G 63 (180)
T PF14097_consen 1 KVILVTDGDEY-AKRAVEIA-AK--NIGGRCISQSAGNPTPLSGEELVELIKQAPH-DP-VLVMFDDKG 63 (180)
T ss_pred CEEEEECChHH-HHHHHHHH-HH--HhCcEEEeccCCCCCcCCHHHHHHHHHhCCC-CC-EEEEEeCCC
Confidence 46778877765 34444433 11 1112344333322223333355555544433 22 367777765
No 467
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=26.99 E-value=1.2e+02 Score=21.49 Aligned_cols=29 Identities=14% Similarity=0.048 Sum_probs=23.5
Q ss_pred cEEEEecChhhHHHHHHcCCeEEEEcCCCc
Q 022348 257 DCLVVEDSVIGLQAATRAGMACVITYTSST 286 (298)
Q Consensus 257 ~~~~vgD~~~Di~~a~~aG~~~v~~~~~~~ 286 (298)
.+.+||| ...+-+.+.+|+..+.+.+..+
T Consensus 5 kIaVIGD-~dtv~GFrLaGi~~~~v~~~ee 33 (104)
T PRK01395 5 KIGVVGD-KDSILPFKALGIDVFPVIDEQE 33 (104)
T ss_pred eEEEEEC-HHHHHHHHHcCCeeEEecChHH
Confidence 5789999 8899999999998776655544
No 468
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=26.47 E-value=2.8e+02 Score=25.41 Aligned_cols=99 Identities=19% Similarity=0.208 Sum_probs=62.5
Q ss_pred CCChhHHHHHHHHHHC-CCeEEEEe-CCCh-hhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHh-CCC
Q 022348 179 EPRPGVLRLMDEAKAA-GKKVAVCS-AATK-SSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRL-GIS 254 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~-g~~i~i~S-~~~~-~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l-gi~ 254 (298)
..+|++.+.|+.|-++ |++++-.. +.++ ..+...++.+ .... +|.++ .|.-|.-.-+.+.++.+.+-- -+.
T Consensus 138 ~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a-k~~~---~DvvI-vDTAGRl~ide~Lm~El~~Ik~~~~ 212 (451)
T COG0541 138 TYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA-KEEG---YDVVI-VDTAGRLHIDEELMDELKEIKEVIN 212 (451)
T ss_pred cCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH-HHcC---CCEEE-EeCCCcccccHHHHHHHHHHHhhcC
Confidence 3678999999888765 55555542 2223 2445556655 3332 46554 455565566777777776544 457
Q ss_pred CCcEEEEecChhhHHHHH-------HcCCeEEEEc
Q 022348 255 EKDCLVVEDSVIGLQAAT-------RAGMACVITY 282 (298)
Q Consensus 255 ~~~~~~vgD~~~Di~~a~-------~aG~~~v~~~ 282 (298)
|.++++|=|....=.+.. +.|++.|++.
T Consensus 213 P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlT 247 (451)
T COG0541 213 PDETLLVVDAMIGQDAVNTAKAFNEALGITGVILT 247 (451)
T ss_pred CCeEEEEEecccchHHHHHHHHHhhhcCCceEEEE
Confidence 999999999986444433 3588877654
No 469
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=26.40 E-value=5e+02 Score=23.64 Aligned_cols=39 Identities=13% Similarity=-0.043 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEEEc
Q 022348 239 PDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITY 282 (298)
Q Consensus 239 P~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~~~ 282 (298)
++..-+..++++...+ ++||.+. +-..|++.|++++.+.
T Consensus 356 ~d~~e~~~~i~~~~pD----liig~~~-~~~~a~k~giP~~~~~ 394 (421)
T cd01976 356 VTHYELEEFVKRLKPD----LIGSGIK-EKYVFQKMGIPFRQMH 394 (421)
T ss_pred CCHHHHHHHHHHhCCC----EEEecCc-chhhhhhcCCCeEeCC
Confidence 4555556666665443 6778876 7777888898886544
No 470
>COG3423 Nlp Predicted transcriptional regulator [Transcription]
Probab=26.28 E-value=35 Score=22.57 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHhCCCCCcEE
Q 022348 238 KPDPSIYVTAAKRLGISEKDCL 259 (298)
Q Consensus 238 KP~~~~~~~~~~~lgi~~~~~~ 259 (298)
+|-|.+=+.++..+|+.|+++|
T Consensus 44 rp~pkgEriIA~algv~P~eIW 65 (82)
T COG3423 44 RPWPKGERIIADALGVPPEEIW 65 (82)
T ss_pred CCCchHHHHHHHHhCCCHHHhC
Confidence 5666688889999999998876
No 471
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=26.05 E-value=2.9e+02 Score=22.27 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=15.7
Q ss_pred HHHHHHHCCCeEEEEeCCChhhHHHHHHHH
Q 022348 187 LMDEAKAAGKKVAVCSAATKSSVILCLENL 216 (298)
Q Consensus 187 ~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~ 216 (298)
++..|.+.++ ++|+.+.+.+......+.+
T Consensus 3 ~~~~l~~~~~-~~v~r~~~~~~~~~~~~a~ 31 (206)
T PRK09140 3 LMQPFTKLPL-IAILRGITPDEALAHVGAL 31 (206)
T ss_pred hhhHHHhCCE-EEEEeCCCHHHHHHHHHHH
Confidence 3445555543 5566666655555555554
No 472
>PRK01215 competence damage-inducible protein A; Provisional
Probab=25.72 E-value=2.2e+02 Score=24.04 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHc---CCeEEEEcCCCc
Q 022348 241 PSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRA---GMACVITYTSST 286 (298)
Q Consensus 241 ~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~a---G~~~v~~~~~~~ 286 (298)
...+...+.++|+.......|+|...++..+-+. ....|++.|+..
T Consensus 25 ~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g 73 (264)
T PRK01215 25 ASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLG 73 (264)
T ss_pred HHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 4467777888999988888999999887766332 346666666543
No 473
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=25.48 E-value=4.1e+02 Score=22.38 Aligned_cols=99 Identities=15% Similarity=0.139 Sum_probs=55.4
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCC-----CC----------C-CH
Q 022348 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQ-----KK----------P-DP 241 (298)
Q Consensus 178 ~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~-----~K----------P-~~ 241 (298)
+...+.+.++.+.+++.|-++.+.++.... .. +.......++ +-.++..-+... +- | ..
T Consensus 111 ~~~V~d~~ea~~~~~~~~~rVflt~G~~~l--~~-f~~~~~~~~~--~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~ 185 (257)
T COG2099 111 WIEVADIEEAAEAAKQLGRRVFLTTGRQNL--AH-FVAADAHSHV--LARVLPPPDVLAKCEDLGVPPARIIAMRGPFSE 185 (257)
T ss_pred eEEecCHHHHHHHHhccCCcEEEecCccch--HH-HhcCcccceE--EEEEcCchHHHHHHHhcCCChhhEEEecCCcCh
Confidence 345567788888888887666666655442 22 2222233333 333333221111 11 1 11
Q ss_pred HHHHHHHHHhCCCCCcEEEEecChhh------HHHHHHcCCeEEEEcCC
Q 022348 242 SIYVTAAKRLGISEKDCLVVEDSVIG------LQAATRAGMACVITYTS 284 (298)
Q Consensus 242 ~~~~~~~~~lgi~~~~~~~vgD~~~D------i~~a~~aG~~~v~~~~~ 284 (298)
+.=..++++++++ +++-=||... +++|..+|+.+|++..+
T Consensus 186 ~~n~all~q~~id---~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 186 EDNKALLEQYRID---VVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred HHHHHHHHHhCCC---EEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 2334456777774 4555566554 89999999999988877
No 474
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=25.28 E-value=4.4e+02 Score=22.66 Aligned_cols=45 Identities=22% Similarity=0.213 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEE-EcCCCchhHh
Q 022348 242 SIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVI-TYTSSTAEQV 290 (298)
Q Consensus 242 ~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~-~~~~~~~~~~ 290 (298)
.=+..++++.|. + .+.| |+..|+....-.|..+|. ..|.++++.+
T Consensus 228 ~rL~eiA~~~g~-~--aylI-d~~~ei~~~w~~~~~~VGvTAGAStPd~l 273 (294)
T COG0761 228 NRLAEIAKRHGK-P--AYLI-DDAEEIDPEWLKGVKTVGVTAGASTPDWL 273 (294)
T ss_pred HHHHHHHHHhCC-C--eEEe-CChHhCCHHHhcCccEEEEecCCCCCHHH
Confidence 356667788887 3 3444 667888888888888884 4555566554
No 475
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=25.21 E-value=83 Score=26.46 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=24.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCCh
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATK 206 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~ 206 (298)
.-||...+++++|+++|+++.+..+...
T Consensus 63 ~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 63 GKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 4688999999999999999999887654
No 476
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.17 E-value=1e+02 Score=20.31 Aligned_cols=45 Identities=20% Similarity=0.340 Sum_probs=36.4
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeE
Q 022348 234 VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMAC 278 (298)
Q Consensus 234 ~~~~KP~~~~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~ 278 (298)
++..-|-...+..+++++.+++.....|-+...++-.++.+|--.
T Consensus 33 vpestpftavlkfaaeefkvpaatsaiitndgiginpaq~agnvf 77 (94)
T KOG3483|consen 33 VPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVF 77 (94)
T ss_pred CCCCCchHHHHHHHHHHccCCccceeEEecCccccCcccccccee
Confidence 456678888899999999999888888887777888888888643
No 477
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=24.91 E-value=1.3e+02 Score=25.13 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCCCcEEEEecChh---hHHHHHHcCCeEEEEc
Q 022348 244 YVTAAKRLGISEKDCLVVEDSVI---GLQAATRAGMACVITY 282 (298)
Q Consensus 244 ~~~~~~~lgi~~~~~~~vgD~~~---Di~~a~~aG~~~v~~~ 282 (298)
...+.+.++. .+++.|-+..+ =+..++..|+..+.+.
T Consensus 129 ~~~a~~i~~~--~~~iIVTq~fHm~RA~~ia~~~Gi~~~~~~ 168 (239)
T PRK10834 129 IVRTRKVFDT--NDFIIITQRFHCERALFIALHMGIQAQCYA 168 (239)
T ss_pred HHHHHHHhCC--CCEEEECCHHHHHHHHHHHHHcCCceEEEe
Confidence 3333344443 34677776664 4555777888866543
No 478
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=24.89 E-value=3.8e+02 Score=21.71 Aligned_cols=41 Identities=17% Similarity=0.128 Sum_probs=24.2
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCc
Q 022348 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (298)
Q Consensus 177 ~~~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~ 220 (298)
...+|.....+++.+++.|+.+-++.+-+.. ......+ |+.
T Consensus 81 DP~~~~~~~~l~~~~~~~g~~veviPGiSS~--~aa~a~~-g~~ 121 (229)
T TIGR01465 81 DPSIYGAIAEQMQLLEALGIPYEVVPGVSSF--FAAAAAL-GAE 121 (229)
T ss_pred CccccccHHHHHHHHHHCCCCEEEECChhHH--HHHHHHc-CCC
Confidence 3345555566777777777777777655443 3334444 555
No 479
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=24.79 E-value=1.1e+02 Score=23.34 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=29.4
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCC
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGM 219 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l 219 (298)
++.++.++=.+|++.|+.+.++.+.....+...++.+ ++
T Consensus 51 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~-~~ 89 (165)
T PF00875_consen 51 LLESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEY-GA 89 (165)
T ss_dssp HHHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHH-TE
T ss_pred HHHHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhc-Cc
Confidence 4446778888999999999999998777777777766 43
No 480
>PLN02591 tryptophan synthase
Probab=24.60 E-value=4.2e+02 Score=22.20 Aligned_cols=99 Identities=13% Similarity=0.072 Sum_probs=53.4
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeC-CC-hhhHHHHHHHHhCCccccCcceEEeCCC-CCCCCCCHHHHHHHHHHhCCCCC
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSA-AT-KSSVILCLENLIGMERFEGLDCFLAGDD-VKQKKPDPSIYVTAAKRLGISEK 256 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~-~~-~~~~~~~l~~~~~l~~~~~fd~v~~~~~-~~~~KP~~~~~~~~~~~lgi~~~ 256 (298)
++++..++...++++|+....+-. +. ...+..+.+.- .. |=-.++..- -+.....+..+...++++.-..+
T Consensus 116 P~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~---~g---FIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~ 189 (250)
T PLN02591 116 PLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEAS---EG---FVYLVSSTGVTGARASVSGRVESLLQELKEVTD 189 (250)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhC---CC---cEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCC
Confidence 446788899999999987766653 33 23355555433 11 222222221 12111112333333333321223
Q ss_pred cEEEEecCh---hhHHHHHHcCCeEEEEcCC
Q 022348 257 DCLVVEDSV---IGLQAATRAGMACVITYTS 284 (298)
Q Consensus 257 ~~~~vgD~~---~Di~~a~~aG~~~v~~~~~ 284 (298)
--++||=+. .|++.+...|...+++.+.
T Consensus 190 ~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSa 220 (250)
T PLN02591 190 KPVAVGFGISKPEHAKQIAGWGADGVIVGSA 220 (250)
T ss_pred CceEEeCCCCCHHHHHHHHhcCCCEEEECHH
Confidence 446777655 4888888899998876654
No 481
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=24.38 E-value=3.7e+02 Score=24.01 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=30.7
Q ss_pred ecCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHHHHHHcCCCCC
Q 022348 73 DCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSS 141 (298)
Q Consensus 73 D~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~ 141 (298)
|+|++++.++......+...+++.|+...-.+ .....+.......+.++.+.|++..
T Consensus 27 ~id~vi~g~E~~l~~~~~d~l~~~Gi~~~g~s------------~~a~~l~~dK~~~k~~l~~~gIptp 83 (379)
T PRK13790 27 NVDWVVIGPEQPLIDGLADILRANGFKVFGPN------------KQAAQIEGSKLFAKKIMEKYNIPTA 83 (379)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhCCCcEECCC------------HHHHHHhCCHHHHHHHHHHCCCCCC
Confidence 44555555554444566777777776532111 1112333444456678888888753
No 482
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=24.12 E-value=1.3e+02 Score=24.02 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=24.5
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChh
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKS 207 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~ 207 (298)
-.+.+.+.++.++++|.++..+|+....
T Consensus 123 ~t~~~i~~~~~ak~~g~~iI~iT~~~~s 150 (192)
T PRK00414 123 NSGNIIKAIEAARAKGMKVITLTGKDGG 150 (192)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 4578899999999999999999998654
No 483
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=23.94 E-value=1.2e+02 Score=18.80 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCC
Q 022348 182 PGVLRLMDEAKAAGKKVAVCSAA 204 (298)
Q Consensus 182 pg~~~~l~~L~~~g~~i~i~S~~ 204 (298)
|+-.+-|+.|.+.|++|.|-+-.
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~~~ 24 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMTYS 24 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--HH
T ss_pred cHHHHHHHHHHHCCCeEEecCcH
Confidence 55678899999999999998743
No 484
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=23.70 E-value=3.5e+02 Score=23.73 Aligned_cols=66 Identities=12% Similarity=0.100 Sum_probs=39.6
Q ss_pred hCCccccCcceEEeCCCCCCCCC---CH----HHHHHHHHHhCCCCC--cEEEEecChh----hHHHHHHcCCeEEEEcC
Q 022348 217 IGMERFEGLDCFLAGDDVKQKKP---DP----SIYVTAAKRLGISEK--DCLVVEDSVI----GLQAATRAGMACVITYT 283 (298)
Q Consensus 217 ~~l~~~~~fd~v~~~~~~~~~KP---~~----~~~~~~~~~lgi~~~--~~~~vgD~~~----Di~~a~~aG~~~v~~~~ 283 (298)
+.+..+ ||.++.-.-.+..-+ .. +..+.++++-|++++ +.+++||..+ --..++..|++..-+++
T Consensus 26 gpl~~~--fd~~~~d~~~g~ks~EkAe~eLa~eAa~~ALekAGL~~~DID~IIvGdl~~Q~~~As~vA~~LGIP~fdV~~ 103 (327)
T TIGR02845 26 GPLGDY--FDKIYDDLYCGEDSWEKAERKLMEDAVNLALKKANLKKDDVDFFLAGDLLNQIITANFVARDLGIPFLGLYG 103 (327)
T ss_pred CCChhh--CCEEEeccccCCcCcchhHHHHHHHHHHHHHHHcCCCHHHCCEEEEeCCCCcccHHHHHHHHhCCCEEEEec
Confidence 466666 888775443443322 21 345666677788886 6888998653 12345677877655554
Q ss_pred C
Q 022348 284 S 284 (298)
Q Consensus 284 ~ 284 (298)
.
T Consensus 104 A 104 (327)
T TIGR02845 104 A 104 (327)
T ss_pred c
Confidence 3
No 485
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=23.63 E-value=2e+02 Score=21.15 Aligned_cols=38 Identities=21% Similarity=0.118 Sum_probs=26.9
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCC
Q 022348 181 RPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGM 219 (298)
Q Consensus 181 ~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l 219 (298)
.|.+.++.+++++.|+.+..++......+...++.. ++
T Consensus 48 ~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~-~~ 85 (149)
T cd03018 48 LCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEEN-GL 85 (149)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhc-CC
Confidence 345566777788888998888877766666666665 43
No 486
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=23.62 E-value=3.3e+02 Score=24.85 Aligned_cols=60 Identities=13% Similarity=0.104 Sum_probs=39.4
Q ss_pred HHHHHHCCCeEEEEeCCChhhHHHHHHHHhC---------CccccCcceEEeCCCCCCCCCCHHHHHHHH
Q 022348 188 MDEAKAAGKKVAVCSAATKSSVILCLENLIG---------MERFEGLDCFLAGDDVKQKKPDPSIYVTAA 248 (298)
Q Consensus 188 l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~---------l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~ 248 (298)
...|.++|+.-..+-|.+........+++ + ...+..+|.++++-.-+.+--....+..++
T Consensus 194 a~~L~~~g~~~i~IaNRT~erA~~La~~~-~~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~ 262 (414)
T COG0373 194 AKHLAEKGVKKITIANRTLERAEELAKKL-GAEAVALEELLEALAEADVVISSTSAPHPIITREMVERAL 262 (414)
T ss_pred HHHHHhCCCCEEEEEcCCHHHHHHHHHHh-CCeeecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHH
Confidence 45788999888888899999888888887 5 122334788888743333332333444443
No 487
>PRK13938 phosphoheptose isomerase; Provisional
Probab=23.57 E-value=1.3e+02 Score=24.13 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=25.2
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCChhhH
Q 022348 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSV 209 (298)
Q Consensus 180 ~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~ 209 (298)
-.+.+.+.++..+++|.++..+|++....+
T Consensus 125 ~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~L 154 (196)
T PRK13938 125 NSMSVLRAAKTARELGVTVVAMTGESGGQL 154 (196)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCChh
Confidence 457889999999999999999999876533
No 488
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=23.48 E-value=4e+02 Score=21.53 Aligned_cols=73 Identities=21% Similarity=0.140 Sum_probs=42.6
Q ss_pred HHHHHHHHHCCCeEEEEeCCChh-hHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCC--CcEEEE
Q 022348 185 LRLMDEAKAAGKKVAVCSAATKS-SVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISE--KDCLVV 261 (298)
Q Consensus 185 ~~~l~~L~~~g~~i~i~S~~~~~-~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~--~~~~~v 261 (298)
..+++.|+++ +++++++|.-.. .=...+.+..+. .++.......+.-+..+....++++.... -+.+||
T Consensus 31 e~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~~g~-------~i~~v~TG~~CH~da~m~~~ai~~l~~~~~~~Dll~i 102 (202)
T COG0378 31 EKTLRALKDE-YKIAVITGDIYTKEDADRLRKLPGE-------PIIGVETGKGCHLDASMNLEAIEELVLDFPDLDLLFI 102 (202)
T ss_pred HHHHHHHHhh-CCeEEEeceeechhhHHHHHhCCCC-------eeEEeccCCccCCcHHHHHHHHHHHhhcCCcCCEEEE
Confidence 4466778888 999999987543 122233331122 22222222122355678888888876543 388999
Q ss_pred ecCh
Q 022348 262 EDSV 265 (298)
Q Consensus 262 gD~~ 265 (298)
+...
T Consensus 103 Es~G 106 (202)
T COG0378 103 ESVG 106 (202)
T ss_pred ecCc
Confidence 8877
No 489
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=23.38 E-value=4.5e+02 Score=23.96 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=29.8
Q ss_pred cCCccccchhHHHHHHHHHHhhcCCCCCCCccccCCCChHHHHHHHHHhcCChhhHHHHHHHcCCCC
Q 022348 74 CDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPS 140 (298)
Q Consensus 74 ~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~ 140 (298)
+|+++...+....+.+.+.++++|++..-.. ............++.++.+.|++.
T Consensus 69 iD~Vv~g~E~~l~~glad~~~~~Gip~~Gp~------------~~aa~le~dK~~~K~~l~~~gIpt 123 (426)
T PRK13789 69 FDLIVVGPEDPLVAGFADWAAELGIPCFGPD------------SYCAQVEGSKHFAKSLMKEAKIPT 123 (426)
T ss_pred CCEEEECCchHHHHHHHHHHHHcCCCcCCCH------------HHHHHHHcCHHHHHHHHHHcCCCC
Confidence 4555555555555566677777787542100 111123334445667777888764
No 490
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=23.32 E-value=4.8e+02 Score=23.80 Aligned_cols=92 Identities=12% Similarity=0.109 Sum_probs=56.3
Q ss_pred HHHHHHHHHHC--CCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHhCCCCCcEEEE
Q 022348 184 VLRLMDEAKAA--GKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVV 261 (298)
Q Consensus 184 ~~~~l~~L~~~--g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~lgi~~~~~~~v 261 (298)
+..++++|++. ++++.+.|..... .+ .++..++-. ....+ .+-..+...+..++++ .|+-++++
T Consensus 65 ~~pLv~~l~~~~P~~~ilvTt~T~Tg-~e-~a~~~~~~~----v~h~Y------lP~D~~~~v~rFl~~~--~P~l~Ii~ 130 (419)
T COG1519 65 ALPLVRALRERFPDLRILVTTMTPTG-AE-RAAALFGDS----VIHQY------LPLDLPIAVRRFLRKW--RPKLLIIM 130 (419)
T ss_pred HHHHHHHHHHhCCCCCEEEEecCccH-HH-HHHHHcCCC----eEEEe------cCcCchHHHHHHHHhc--CCCEEEEE
Confidence 46788888888 6666666544433 22 233331321 11111 1233345666666654 67778888
Q ss_pred ecCh--hhHHHHHHcCCeEEEEcCCCchhH
Q 022348 262 EDSV--IGLQAATRAGMACVITYTSSTAEQ 289 (298)
Q Consensus 262 gD~~--~Di~~a~~aG~~~v~~~~~~~~~~ 289 (298)
+--. |=+..+++.|++.+++|+.-+..-
T Consensus 131 EtElWPnli~e~~~~~~p~~LvNaRLS~rS 160 (419)
T COG1519 131 ETELWPNLINELKRRGIPLVLVNARLSDRS 160 (419)
T ss_pred eccccHHHHHHHHHcCCCEEEEeeeechhh
Confidence 7665 688999999999999998655443
No 491
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=23.26 E-value=1.8e+02 Score=21.09 Aligned_cols=35 Identities=20% Similarity=0.176 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHH
Q 022348 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENL 216 (298)
Q Consensus 182 pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~ 216 (298)
+.+.+.++.+.++|+++.+-|.+........++.+
T Consensus 78 ~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~ 112 (124)
T PF01113_consen 78 DAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEEL 112 (124)
T ss_dssp HHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHH
T ss_pred HHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHH
Confidence 45667888888899999999999887676777765
No 492
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=23.20 E-value=3.9e+02 Score=23.84 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=49.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCC-CCCCCCCHHHHHHHHHHhCCCCCc
Q 022348 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDD-VKQKKPDPSIYVTAAKRLGISEKD 257 (298)
Q Consensus 179 ~~~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~-~~~~KP~~~~~~~~~~~lgi~~~~ 257 (298)
.-.||+.-+|..+. ..+.++++|....-.+..+++.+ .-..+ ..--+..+. ....-++ + +=+..++-++..
T Consensus 214 ~kRPgvD~FL~~~a-~~yEIVi~sse~gmt~~pl~d~l-DP~g~--IsYkLfr~~t~y~~G~H---v-Kdls~LNRdl~k 285 (393)
T KOG2832|consen 214 KKRPGVDYFLGHLA-KYYEIVVYSSEQGMTVFPLLDAL-DPKGY--ISYKLFRGATKYEEGHH---V-KDLSKLNRDLQK 285 (393)
T ss_pred ccCchHHHHHHhhc-ccceEEEEecCCccchhhhHhhc-CCcce--EEEEEecCcccccCccc---h-hhhhhhccccce
Confidence 36789998998888 45999999998877777777766 22222 222222221 1111111 1 125688999999
Q ss_pred EEEEecChh
Q 022348 258 CLVVEDSVI 266 (298)
Q Consensus 258 ~~~vgD~~~ 266 (298)
+++|+=..+
T Consensus 286 VivVd~d~~ 294 (393)
T KOG2832|consen 286 VIVVDFDAN 294 (393)
T ss_pred eEEEEcccc
Confidence 999985543
No 493
>PRK10060 RNase II stability modulator; Provisional
Probab=23.10 E-value=5.1e+02 Score=25.16 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=53.3
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHH---HHHHHHHHhCCCCCc
Q 022348 181 RPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPS---IYVTAAKRLGISEKD 257 (298)
Q Consensus 181 ~pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~---~~~~~~~~lgi~~~~ 257 (298)
.+.+.+++..|++.|+++++=--+........+..+ .++..+ +|.-+..+ +...+.+.. .+..+++.+|+.
T Consensus 540 ~~~~~~~l~~L~~~G~~ialDdfGtg~ssl~~L~~l-~~d~iK-iD~sfv~~-i~~~~~~~~~v~~ii~~a~~lg~~--- 613 (663)
T PRK10060 540 EELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARF-PIDAIK-LDQSFVRD-IHKQPVSQSLVRAIVAVAQALNLQ--- 613 (663)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHhC-CCCEEE-ECHHHHhc-cccCcchHHHHHHHHHHHHHCCCc---
Confidence 346678899999999999986444433334445554 444321 23222111 111222222 344455677763
Q ss_pred EEEEe-cChhhHHHHHHcCCeEE
Q 022348 258 CLVVE-DSVIGLQAATRAGMACV 279 (298)
Q Consensus 258 ~~~vg-D~~~Di~~a~~aG~~~v 279 (298)
+++=| .+...+..++..|+..+
T Consensus 614 viAeGVEt~~q~~~l~~~G~d~~ 636 (663)
T PRK10060 614 VIAEGVETAKEDAFLTKNGVNER 636 (663)
T ss_pred EEEecCCCHHHHHHHHHcCCCEE
Confidence 44444 55578899999999876
No 494
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=22.99 E-value=4.7e+02 Score=22.53 Aligned_cols=15 Identities=7% Similarity=-0.144 Sum_probs=8.7
Q ss_pred HHHHHHHHHhhcCCC
Q 022348 85 HRQAYNDAFSHFNVR 99 (298)
Q Consensus 85 ~~~~~~~~~~~~~~~ 99 (298)
....+.+.++++|..
T Consensus 77 l~~gi~~~~~~~gy~ 91 (346)
T PRK10401 77 LVKAVDLVAQQHQKY 91 (346)
T ss_pred HHHHHHHHHHHCCCE
Confidence 445556666666654
No 495
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=22.94 E-value=6.8e+02 Score=26.08 Aligned_cols=97 Identities=10% Similarity=0.161 Sum_probs=53.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCCChhhH------H------HHHHHHhCCccccCcceEEeCCC-------------CCCC-
Q 022348 184 VLRLMDEAKAAGKKVAVCSAATKSSV------I------LCLENLIGMERFEGLDCFLAGDD-------------VKQK- 237 (298)
Q Consensus 184 ~~~~l~~L~~~g~~i~i~S~~~~~~~------~------~~l~~~~~l~~~~~fd~v~~~~~-------------~~~~- 237 (298)
...+++.|++.|+++.++.++..... . ..++.+..+-...++|.++.... .+..
T Consensus 577 ~v~~i~al~~~G~~vI~v~~npetvs~d~~~~D~ly~ep~~~e~vl~i~~~e~idgVI~~~gg~~~~~la~~le~~Gi~i 656 (1050)
T TIGR01369 577 CVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKPEGVIVQFGGQTPLNLAKALEEAGVPI 656 (1050)
T ss_pred HHHHHHHHHhCCCEEEEEecCCccccccccccceEEEecCCHHHHHHHHhhcCCCEEEEccCcHhHHHHHHHHHHCCCcE
Confidence 46789999999999999866432100 0 00111112222223566653321 1111
Q ss_pred -CCCHH---------HHHHHHHHhCCCCCcEEEEecChhhHHHHHHcCCeEEE
Q 022348 238 -KPDPS---------IYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVI 280 (298)
Q Consensus 238 -KP~~~---------~~~~~~~~lgi~~~~~~~vgD~~~Di~~a~~aG~~~v~ 280 (298)
-++++ -+..+++++|++..+.+.+.|...-...+...|.++++
T Consensus 657 ~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~~v~s~ee~~~~~~~igyPvIV 709 (1050)
T TIGR01369 657 LGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSVEEAVEFASEIGYPVLV 709 (1050)
T ss_pred ECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHhcCCCEEE
Confidence 13333 46777889999877777776533333446777888764
No 496
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=22.91 E-value=97 Score=26.42 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=25.7
Q ss_pred CCCCCChhH-HHHHHHHHHCCCeEEEEeCCCh
Q 022348 176 GTVEPRPGV-LRLMDEAKAAGKKVAVCSAATK 206 (298)
Q Consensus 176 ~~~~~~pg~-~~~l~~L~~~g~~i~i~S~~~~ 206 (298)
+...+.++. .++++.+++.|+.+.+.||+..
T Consensus 134 GEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~ 165 (295)
T TIGR02494 134 GEPLLQPEFALALLQACHERGIHTAVETSGFT 165 (295)
T ss_pred cchhchHHHHHHHHHHHHHcCCcEeeeCCCCC
Confidence 344577885 6999999999999999999964
No 497
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=22.90 E-value=2.3e+02 Score=20.49 Aligned_cols=37 Identities=27% Similarity=0.199 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCC
Q 022348 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGM 219 (298)
Q Consensus 182 pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l 219 (298)
+.+.++.+++++.|+.++.+|......+...++.. ++
T Consensus 44 ~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~-~~ 80 (140)
T cd03017 44 CDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKY-GL 80 (140)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHh-CC
Confidence 34455666777788888888887776666666665 54
No 498
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=22.90 E-value=5.2e+02 Score=22.60 Aligned_cols=89 Identities=19% Similarity=0.145 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHCC--CeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeC----------CCCCCCCCCHHHHHHHHH
Q 022348 182 PGVLRLMDEAKAAG--KKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAG----------DDVKQKKPDPSIYVTAAK 249 (298)
Q Consensus 182 pg~~~~l~~L~~~g--~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~----------~~~~~~KP~~~~~~~~~~ 249 (298)
+.+.++++++++.+ +++.+-+..+...+.. +... | .|.+..+ ...+...|.-..+..+.+
T Consensus 120 ~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~-l~~a-G------aD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~ 191 (325)
T cd00381 120 VYVIEMIKFIKKKYPNVDVIAGNVVTAEAARD-LIDA-G------ADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAA 191 (325)
T ss_pred HHHHHHHHHHHHHCCCceEEECCCCCHHHHHH-HHhc-C------CCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHH
Confidence 45788899999876 4444422333333332 2222 3 3554421 112244565555555544
Q ss_pred Hh---CCCCCcEEEEecC----hhhHHHHHHcCCeEEEEcC
Q 022348 250 RL---GISEKDCLVVEDS----VIGLQAATRAGMACVITYT 283 (298)
Q Consensus 250 ~l---gi~~~~~~~vgD~----~~Di~~a~~aG~~~v~~~~ 283 (298)
.. +++ +|.|+ ..|+..|..+|...|++.+
T Consensus 192 ~~~~~~vp-----VIA~GGI~~~~di~kAla~GA~~VmiGt 227 (325)
T cd00381 192 AARDYGVP-----VIADGGIRTSGDIVKALAAGADAVMLGS 227 (325)
T ss_pred HHhhcCCc-----EEecCCCCCHHHHHHHHHcCCCEEEecc
Confidence 33 332 34444 3599999999999998743
No 499
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=22.78 E-value=5.5e+02 Score=22.88 Aligned_cols=101 Identities=15% Similarity=0.125 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCChhhHHHHHHHHhCCccccCcceEEeCCCCC--C-----CC---C----------CH
Q 022348 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVK--Q-----KK---P----------DP 241 (298)
Q Consensus 182 pg~~~~l~~L~~~g~~i~i~S~~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~--~-----~K---P----------~~ 241 (298)
..+.++|...+++++-+..+.-.+.+.++.+++-. .-.+ -..|+...... . .+ | -.
T Consensus 13 ~~~~~lL~~A~~~~yAVgAfNv~n~e~~~Avi~AA-Ee~~---sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 88 (357)
T TIGR01520 13 DDVHKLFQYAKENNFAIPAINCTSSSTINAALEAA-ADVK---SPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGA 88 (357)
T ss_pred HHHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHH-HHhC---CCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHH
Confidence 45678889999999999888777777788777665 2222 13333332211 1 01 1 22
Q ss_pred HHHHHHHHHhCCCCCcEEEEecChh----hHHHHHHcC-----------CeEEEEcCCCchh
Q 022348 242 SIYVTAAKRLGISEKDCLVVEDSVI----GLQAATRAG-----------MACVITYTSSTAE 288 (298)
Q Consensus 242 ~~~~~~~~~lgi~~~~~~~vgD~~~----Di~~a~~aG-----------~~~v~~~~~~~~~ 288 (298)
.+...++++..++ =+++.+=+.+ .++.+..+| ++.||+.+...+-
T Consensus 89 ~~v~~~Ae~a~VP--ValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpf 148 (357)
T TIGR01520 89 HHVHSIAEHYGVP--VVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPI 148 (357)
T ss_pred HHHHHHHHHCCCC--EEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCH
Confidence 3556667777764 3666654432 256676765 9999998876543
No 500
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=22.72 E-value=1.7e+02 Score=25.80 Aligned_cols=89 Identities=16% Similarity=0.114 Sum_probs=45.8
Q ss_pred HHHHC-CCeEEEE-eCCC--hhhHHHHHHHHhCCccccCcceEEeCCCCCCCCCCHHH---HHHHHHHhCCCCCcEEEEe
Q 022348 190 EAKAA-GKKVAVC-SAAT--KSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSI---YVTAAKRLGISEKDCLVVE 262 (298)
Q Consensus 190 ~L~~~-g~~i~i~-S~~~--~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~---~~~~~~~lgi~~~~~~~vg 262 (298)
+|+++ ++.+.++ |+.- ..+.....+.+ ++ .. .+..+..+.....+--..+ +..++++. .|.-+++.|
T Consensus 2 ~l~~~~~~~~~li~tG~H~~~~~g~~~~~~f-~i-~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~Pd~Vlv~G 75 (346)
T PF02350_consen 2 ALQKDPGFELILIVTGQHLDPEMGDTFFEGF-GI-PK--PDYLLDSDSQSMAKSTGLAIIELADVLERE--KPDAVLVLG 75 (346)
T ss_dssp HHHCSTTEEEEEEEECSS--CHHHHHHHHHT-T---S--EEEE--STTS-HHHHHHHHHHHHHHHHHHH--T-SEEEEET
T ss_pred hhhhCCCCCEEEEEeCCCCCHHHHHHHHhhC-CC-CC--CCcccccccchHHHHHHHHHHHHHHHHHhc--CCCEEEEEc
Confidence 45555 5666554 4444 45555666655 66 33 5666665442222211222 33333333 778899999
Q ss_pred cChhhH---HHHHHcCCeEEEEcCC
Q 022348 263 DSVIGL---QAATRAGMACVITYTS 284 (298)
Q Consensus 263 D~~~Di---~~a~~aG~~~v~~~~~ 284 (298)
|+..=+ .+|...+++.+-+.++
T Consensus 76 D~~~~la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 76 DRNEALAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp TSHHHHHHHHHHHHTT-EEEEES--
T ss_pred CCchHHHHHHHHHHhCCCEEEecCC
Confidence 999644 4566679998877766
Done!