Query 022349
Match_columns 298
No_of_seqs 120 out of 863
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 04:03:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022349.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022349hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iw1a1 c.87.1.8 (A:2-371) Lip 99.3 1.4E-10 1E-14 103.0 20.6 78 219-297 133-222 (370)
2 d2bisa1 c.87.1.8 (A:1-437) Gly 99.0 2E-09 1.4E-13 98.5 12.9 78 218-296 183-276 (437)
3 d1rzua_ c.87.1.8 (A:) Glycogen 98.6 7.8E-07 5.7E-11 83.1 18.5 79 218-297 203-318 (477)
4 d1uqta_ c.87.1.6 (A:) Trehalos 95.9 0.01 7.4E-07 54.7 8.4 52 245-297 219-281 (456)
5 d2bfwa1 c.87.1.8 (A:218-413) G 91.5 0.066 4.8E-06 42.5 3.8 27 269-296 32-59 (196)
6 d1pswa_ c.87.1.7 (A:) ADP-hept 58.7 43 0.0031 27.0 11.9 37 220-259 260-296 (348)
7 d1b74a1 c.78.2.1 (A:1-105) Glu 32.6 30 0.0021 24.3 4.7 33 35-76 1-33 (105)
8 d1f0ka_ c.87.1.2 (A:) Peptidog 31.1 1.1E+02 0.0083 23.8 10.0 35 135-169 85-121 (351)
9 d1ycga1 c.23.5.1 (A:251-399) N 27.1 60 0.0043 23.0 6.0 38 33-74 1-38 (149)
10 d2bw0a2 c.65.1.1 (A:1-203) 10- 23.6 1.4E+02 0.01 22.5 8.3 31 35-75 1-32 (203)
No 1
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}
Probab=99.29 E-value=1.4e-10 Score=103.03 Aligned_cols=78 Identities=13% Similarity=0.049 Sum_probs=61.2
Q ss_pred ccCCcEEEEcCHHHHHHHHHHhCC-CCCceEEcCCCCCCccccc--CCC---------CCCCCcEEEEEcCCCCccChHH
Q 022349 219 GSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVL--PLE---------RSTEYPAIISVAQFRPEKVRYK 286 (298)
Q Consensus 219 ~~~ad~viaNS~~Ta~~i~~~~g~-~~~~~VIYPPvd~~~~~~~--~~~---------~~~~~~~iLsvgRl~p~Kn~~l 286 (298)
...++.++++|++..+.+.+.++. ..++.|++|.+|++.+... +.. -+.++++++++||+.++|+++.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vi~~gv~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~gr~~~~Kg~~~ 212 (370)
T d2iw1a1 133 QGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDR 212 (370)
T ss_dssp TTCCCEEEESCHHHHHHHHHHHCCCGGGEEECCCCCCGGGSGGGSCTTHHHHHHHHTTCCTTCEEEEEECSCTTTTTHHH
T ss_pred hccCceEEEecHHHHHHHHHhcCCCcceEEEEEeecccccccccCchhhhhhhhhccCCCccceEEEEEeccccccchhh
Confidence 457899999999999999999986 5667899999998765321 110 0123578999999999999999
Q ss_pred HHHHHHHhhhh
Q 022349 287 LISTRYYSYLD 297 (298)
Q Consensus 287 ~I~~Afa~~~~ 297 (298)
+|+ |++++.+
T Consensus 213 li~-a~~~l~~ 222 (370)
T d2iw1a1 213 SIE-ALASLPE 222 (370)
T ss_dssp HHH-HHHTSCH
T ss_pred hcc-ccccccc
Confidence 999 9987643
No 2
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=98.97 E-value=2e-09 Score=98.54 Aligned_cols=78 Identities=17% Similarity=0.014 Sum_probs=59.9
Q ss_pred hccCCcEEEEcCHHHHHHHHHHhCC-CCCceEEcCCCCCCcccccCCCC--------------CCCCcEEEEEcCCC-Cc
Q 022349 218 VGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLER--------------STEYPAIISVAQFR-PE 281 (298)
Q Consensus 218 ~~~~ad~viaNS~~Ta~~i~~~~g~-~~~~~VIYPPvd~~~~~~~~~~~--------------~~~~~~iLsvgRl~-p~ 281 (298)
....+|.++++|+..+.+..+.++. ..++.|+++++|.+.+....... ..++..++++||+. ++
T Consensus 183 ~~~~~d~v~~~~~~~~~~~~~~~~~~~~ki~vi~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~~ 262 (437)
T d2bisa1 183 GGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFNGIDCSFWNESYLTGSRDERKKSLLSKFGMDEGVTFMFIGRFDRGQ 262 (437)
T ss_dssp HHHHSSEEEESCHHHHHHTHHHHGGGTTTEEECCCCCCTTTSCGGGCCSCHHHHHHHHHHHTTCCSCEEEEEESCBCSSS
T ss_pred HHHhhhhhcccchhhhhhhhhhhccccCceEEEecccccccccccccchhhHHHHHhhhhhhhccCCceEEEeecccccc
Confidence 3456999999999999988888765 56889999999998775310000 01246899999995 68
Q ss_pred cChHHHHHHHHHhhh
Q 022349 282 KVRYKLISTRYYSYL 296 (298)
Q Consensus 282 Kn~~l~I~~Afa~~~ 296 (298)
|+++.+++ |+..+.
T Consensus 263 Kg~~~ll~-a~~~~~ 276 (437)
T d2bisa1 263 KGVDVLLK-AIEILS 276 (437)
T ss_dssp SCHHHHHH-HHHHHT
T ss_pred hhHHHHHh-hhcccc
Confidence 99999999 998764
No 3
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]}
Probab=98.62 E-value=7.8e-07 Score=83.12 Aligned_cols=79 Identities=9% Similarity=-0.027 Sum_probs=55.6
Q ss_pred hccCCcEEEEcCHHHHHHHHHH-hCC---------CCCceEEcCCCCCCccccc-----CCC------------------
Q 022349 218 VGSCADLAMVNSSWTQSHIEKL-WGI---------PDRIKRVYPPCDTSGLQVL-----PLE------------------ 264 (298)
Q Consensus 218 ~~~~ad~viaNS~~Ta~~i~~~-~g~---------~~~~~VIYPPvd~~~~~~~-----~~~------------------ 264 (298)
....+|.+++.|...++.+... ++. ..++.||++.+|.+.+... +..
T Consensus 203 ~~~~ad~~~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~ 282 (477)
T d1rzua_ 203 GLQTATALSTVSPSYAEEILTAEFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAE 282 (477)
T ss_dssp HHHHCSEEEESCHHHHHHTTSHHHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHH
T ss_pred HHHhhhhhhhccHHHHHHHHHHhcCcchhhhhhhccccEEEEECCcchhhccccccccccccchhhhHHHhhhhHHHHHH
Confidence 3456999999999887765432 111 2467899999998876420 000
Q ss_pred ----CCCCCcEEEEEcCCCCccChHHHHHHHHHhhhh
Q 022349 265 ----RSTEYPAIISVAQFRPEKVRYKLISTRYYSYLD 297 (298)
Q Consensus 265 ----~~~~~~~iLsvgRl~p~Kn~~l~I~~Afa~~~~ 297 (298)
...+.+.++++||++|+|+++++++ |+.++++
T Consensus 283 ~~~~~~~~~~~i~~vgrl~~~KG~~~Ll~-a~~~~~~ 318 (477)
T d1rzua_ 283 HFRIDDDGSPLFCVISRLTWQKGIDLMAE-AVDEIVS 318 (477)
T ss_dssp HHTCCCSSSCEEEEESCBSTTTTHHHHHT-THHHHHH
T ss_pred hcccccCCccEEEEEeeeeecCCcHHHHH-HHHHHHh
Confidence 0112468999999999999999999 9987654
No 4
>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]}
Probab=95.86 E-value=0.01 Score=54.68 Aligned_cols=52 Identities=17% Similarity=0.128 Sum_probs=36.8
Q ss_pred CceEEcCCCCCCccccc---CCC--------CCCCCcEEEEEcCCCCccChHHHHHHHHHhhhh
Q 022349 245 RIKRVYPPCDTSGLQVL---PLE--------RSTEYPAIISVAQFRPEKVRYKLISTRYYSYLD 297 (298)
Q Consensus 245 ~~~VIYPPvd~~~~~~~---~~~--------~~~~~~~iLsvgRl~p~Kn~~l~I~~Afa~~~~ 297 (298)
++.++++-+|++.+... +.. ..++.+.+++|||+.+.|+++..|+ ||.++++
T Consensus 219 ~v~~~p~GID~~~~~~~~~~~~~~~~~~l~~~~~~~~~il~V~Rld~~KGi~~~l~-A~~~~l~ 281 (456)
T d1uqta_ 219 RTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFL-AYEALLE 281 (456)
T ss_dssp EEEECCCCCCHHHHHHHHHSCCCHHHHHHHHHTTTCEEEEEECCBCGGGCHHHHHH-HHHHHHH
T ss_pred eeeeecCcccchhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCchhhchHHHHH-HHHHHHH
Confidence 34566666777666421 110 0123579999999999999999999 9999865
No 5
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=91.49 E-value=0.066 Score=42.53 Aligned_cols=27 Identities=11% Similarity=0.000 Sum_probs=23.8
Q ss_pred CcEEEEEcCCC-CccChHHHHHHHHHhhh
Q 022349 269 YPAIISVAQFR-PEKVRYKLISTRYYSYL 296 (298)
Q Consensus 269 ~~~iLsvgRl~-p~Kn~~l~I~~Afa~~~ 296 (298)
...++++||+. |+||++.+|+ |++.+.
T Consensus 32 ~~~il~~Grl~~~~Kg~~~li~-a~~~l~ 59 (196)
T d2bfwa1 32 GVTFMFIGRFDRGQKGVDVLLK-AIEILS 59 (196)
T ss_dssp CEEEEEESCBCSSSSCHHHHHH-HHHHHT
T ss_pred CCEEEEEcCCCccccCHHHHHH-HHHhhh
Confidence 47899999995 8999999999 998764
No 6
>d1pswa_ c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase II {Escherichia coli [TaxId: 562]}
Probab=58.74 E-value=43 Score=27.04 Aligned_cols=37 Identities=14% Similarity=0.173 Sum_probs=31.1
Q ss_pred cCCcEEEEcCHHHHHHHHHHhCCCCCceEEcCCCCCCccc
Q 022349 220 SCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQ 259 (298)
Q Consensus 220 ~~ad~viaNS~~Ta~~i~~~~g~~~~~~VIYPPvd~~~~~ 259 (298)
+.+|++|+|.+... |+....| .....+|-|-+.+.+.
T Consensus 260 ~~a~l~I~~Dtg~~-HlAaa~g--~p~i~lfg~~~~~~~~ 296 (348)
T d1pswa_ 260 AACKAIVTNDSGLM-HVAAALN--RPLVALYGPSSPDFTP 296 (348)
T ss_dssp HTSSEEEEESSHHH-HHHHHTT--CCEEEEESSSCTTSSC
T ss_pred hcceeEeecCccHH-HHHHHcC--CCEEEEECCCCHhhhC
Confidence 47999999999998 8899998 7888999887776654
No 7
>d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}
Probab=32.59 E-value=30 Score=24.27 Aligned_cols=33 Identities=33% Similarity=0.636 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEccC
Q 022349 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (298)
Q Consensus 35 ~~Va~~Hp~l~~~GGaErV~~~l~~aL~~~~~~~~v~iyT~~ 76 (298)
|||++|-.-+ || +...+++.+..|+.++ +|.++
T Consensus 1 mkIgifDSGi---GG-----LtVl~~l~~~lP~~~~-iY~~D 33 (105)
T d1b74a1 1 MKIGIFDSGV---GG-----LTVLKAIRNRYRKVDI-VYLGD 33 (105)
T ss_dssp CEEEEEESSS---TH-----HHHHHHHHHHSSSCEE-EEEEC
T ss_pred CEEEEEeCCC---CH-----HHHHHHHHHHCCCCCE-EEEec
Confidence 6788886544 55 4555888889999995 67654
No 8
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}
Probab=31.13 E-value=1.1e+02 Score=23.84 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=19.9
Q ss_pred HHhccCCcEEEeCCCccccccc--ccccCCeEEEEee
Q 022349 135 ALCKFTPLYYFDTSGYAFTYPL--ARIFGCRVICYTH 169 (298)
Q Consensus 135 ~l~~~~pDv~i~s~~~~~~~p~--~~~~~~~~i~Y~H 169 (298)
.+...+||+++++.+.....+. +...+.|++.+.+
T Consensus 85 i~~~~~~~~~~~~~~~~~~~~~~~a~~~~ip~~~~~~ 121 (351)
T d1f0ka_ 85 IMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQ 121 (351)
T ss_dssp HHHHHCCSEEEECSSTTHHHHHHHHHHTTCCEEEEEC
T ss_pred Hhhccccceeeecccchhhhhhhhhhhcccceeeccc
Confidence 3567889988877553322222 2235677766544
No 9
>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]}
Probab=27.10 E-value=60 Score=22.97 Aligned_cols=38 Identities=3% Similarity=0.012 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEc
Q 022349 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (298)
Q Consensus 33 ~~~~Va~~Hp~l~~~GGaErV~~~l~~aL~~~~~~~~v~iyT 74 (298)
.|.||.|+.... .|..|++...+++.+.+. ++++.++.
T Consensus 1 ~k~K~lIvY~S~--~GnT~~vA~~Ia~~l~~~--g~~v~~~~ 38 (149)
T d1ycga1 1 GKAKAVIAYDTM--WLSTEKMAHALMDGLVAG--GCEVKLFK 38 (149)
T ss_dssp CCSEEEEEECCS--SSHHHHHHHHHHHHHHHT--TCEEEEEE
T ss_pred CCcEEEEEEECC--CcHHHHHHHHHHHHHHhc--CCeeEEEE
Confidence 367888887776 499999999999999886 45556654
No 10
>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.61 E-value=1.4e+02 Score=22.46 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCCChHHHHHHHHHHHHHHhCCCCeEE-EEcc
Q 022349 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCI-VYTG 75 (298)
Q Consensus 35 ~~Va~~Hp~l~~~GGaErV~~~l~~aL~~~~~~~~v~-iyT~ 75 (298)
|||+|+ |......+.+++|.+. +++++ |+|.
T Consensus 1 MkI~~~--------G~~~~~~~~l~~L~~~--~~~i~~V~t~ 32 (203)
T d2bw0a2 1 MKIAVI--------GQSLFGQEVYCHLRKE--GHEVVGVFTV 32 (203)
T ss_dssp CEEEEE--------CCHHHHHHHHHHHHHT--TCEEEEEEEC
T ss_pred CEEEEE--------cCCHHHHHHHHHHHHC--CCcEEEEEcC
Confidence 688887 3345566777888876 45544 5663
Done!