BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022351
(298 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225454936|ref|XP_002277185.1| PREDICTED: ribosome biogenesis GTPase A [Vitis vinifera]
gi|297744953|emb|CBI38545.3| unnamed protein product [Vitis vinifera]
Length = 369
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/291 (65%), Positives = 230/291 (79%), Gaps = 6/291 (2%)
Query: 7 SLFKLAREIGTAVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQL 66
++ L + +G+ V ++ W+ PHMAAA+RA+++R+PLVD++LEVRDARIP SSE+DQL
Sbjct: 2 TIANLEKRLGSGV-KRAAKTWFSPHMAAASRAVSERIPLVDLVLEVRDARIPLSSEYDQL 60
Query: 67 RNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQA 126
RN SSS+RI+VLNKMDLA+ + KEW+ +F+QQNC SFGVNSHNKDN+KE LKFLQA
Sbjct: 61 RNFP--SSSKRIIVLNKMDLANRLEIKEWMRYFEQQNCISFGVNSHNKDNIKECLKFLQA 118
Query: 127 HVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPG 186
V+ ++K D+ SS T T+ML+GIPNVGKSALANSLHQIGRI+AAEKGKL+HATVSP PG
Sbjct: 119 QVKGVKKIDH--SSYTATIMLVGIPNVGKSALANSLHQIGRISAAEKGKLKHATVSPIPG 176
Query: 187 ETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLG 246
ET+DI SLKI SHPN+YVLDTPGILPP+I DV VCSKLALTGAI D VG KELAQYFL
Sbjct: 177 ETRDISSLKIGSHPNVYVLDTPGILPPDILDVVVCSKLALTGAIKDCLVGEKELAQYFLS 236
Query: 247 ILNFSDEYKKWAKFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQ 297
ILN SDEYKKW K S + N+ T+ + SE KRQ PTDHTQ
Sbjct: 237 ILNRSDEYKKWEKLSAEE-NEISTIDQRVGCLGSSELDSRQKRQYPTDHTQ 286
>gi|297813513|ref|XP_002874640.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297320477|gb|EFH50899.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 373
Score = 350 bits (899), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 183/301 (60%), Positives = 226/301 (75%), Gaps = 16/301 (5%)
Query: 1 MATSSSSLFKLAREIGTAV---SQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARI 57
MAT+ S +K+AREIG AV S+ WYGPHMAAA RAI++R+PLVD +LE+RDARI
Sbjct: 1 MATAKS--WKIAREIGDAVIKASRNPNRRWYGPHMAAAVRAISERIPLVDFVLEIRDARI 58
Query: 58 PFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNV 117
P SS+++ LR PF S +RI+VLNKM+LA P + K+ I +F+++ S+ VNSHNK+ V
Sbjct: 59 PLSSDYELLRKFSPFPS-QRIIVLNKMELAEPLELKKCIDYFEERKYLSYAVNSHNKECV 117
Query: 118 KEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLR 177
K+FL FLQ+ VR L K+ Y S T T+MLLGIPN+GKSALANSLHQIGRI+AAEKGKL+
Sbjct: 118 KQFLNFLQSQVRELHKAGY--SGHTTTMMLLGIPNIGKSALANSLHQIGRISAAEKGKLK 175
Query: 178 HATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGG 237
H TVS QPG+TKDI SLKI SHPN+YVLDTPGI PP ++D E+CSKLALTGAI D VG
Sbjct: 176 HTTVSSQPGDTKDIMSLKIGSHPNVYVLDTPGIFPPTLNDAEICSKLALTGAIPDDIVGE 235
Query: 238 KELAQYFLGILNFSDEYKKWAKFSINQ-INKPLTLHHKADQSSGSESGMIWKRQNPTDHT 296
+LA+ FL ILN S EYKKWAK +Q + + L+ D+SS S+ KRQ PTDHT
Sbjct: 236 IKLARLFLTILNSSYEYKKWAKLCKSQDLTESLS-----DESSKSDGKR--KRQYPTDHT 288
Query: 297 Q 297
Q
Sbjct: 289 Q 289
>gi|240255778|ref|NP_192803.4| GTP binding protein [Arabidopsis thaliana]
gi|3600035|gb|AAC35523.1| contains similarity to GTP-binding proteins [Arabidopsis thaliana]
gi|332657513|gb|AEE82913.1| GTP binding protein [Arabidopsis thaliana]
Length = 377
Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 179/301 (59%), Positives = 224/301 (74%), Gaps = 16/301 (5%)
Query: 1 MATSSSSLFKLAREIGTAV---SQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARI 57
MAT+ + +K+AREIG AV S+ WYGPHMAAA RAI++R+PLVD +LE+RDARI
Sbjct: 1 MATAKT--WKIAREIGDAVIKASRNPNRRWYGPHMAAAVRAISERIPLVDFVLEIRDARI 58
Query: 58 PFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNV 117
P SSE++ LR P S +RI+VLNKM+LA P + K+ I +F+++N S+ VNSHNKD V
Sbjct: 59 PLSSEYELLRKFSPLPS-KRIIVLNKMELADPLELKKCIDYFEERNYLSYAVNSHNKDCV 117
Query: 118 KEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLR 177
K+ L FLQ+ VR L K+ + S T T+MLLGIPNVGKSAL+NSLH IGRI+AAEKGKL+
Sbjct: 118 KQLLNFLQSQVRELHKAGH--SGHTTTMMLLGIPNVGKSALSNSLHHIGRISAAEKGKLK 175
Query: 178 HATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGG 237
H TVS QPG+TKDI SLKI SHPN+YVLDTPGI PP ++D E+C+KLALTGAI D VG
Sbjct: 176 HTTVSSQPGDTKDIMSLKIGSHPNVYVLDTPGIFPPNLYDAEICAKLALTGAIPDDIVGE 235
Query: 238 KELAQYFLGILNFSDEYKKWAKFSINQ-INKPLTLHHKADQSSGSESGMIWKRQNPTDHT 296
+LA+ FL ILN S EYKKWAK +Q + + L+ D+SS S++ KRQ TDHT
Sbjct: 236 LKLARLFLTILNSSHEYKKWAKLCKSQDLTESLS-----DESSKSDAKH--KRQYATDHT 288
Query: 297 Q 297
Q
Sbjct: 289 Q 289
>gi|449450556|ref|XP_004143028.1| PREDICTED: ribosome biogenesis GTPase A-like [Cucumis sativus]
gi|449482814|ref|XP_004156412.1| PREDICTED: ribosome biogenesis GTPase A-like [Cucumis sativus]
Length = 366
Score = 343 bits (881), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 174/292 (59%), Positives = 213/292 (72%), Gaps = 20/292 (6%)
Query: 11 LAREIGTAVSQKKGG-----GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQ 65
L R+IGTA++Q G GWY HM AA+RA+A+R+PLVD +LEVRDARIP SSE++
Sbjct: 6 LMRKIGTAINQLAAGNRISSGWYDAHMEAASRAVAERIPLVDFVLEVRDARIPTSSEYEM 65
Query: 66 LRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ 125
++NH P SS+RI+VLNK DLA +Q + W F+ NC S+GVNSHNK+N++EFL FLQ
Sbjct: 66 MKNHPP--SSKRIIVLNKTDLADQSQTEVWTRHFEDHNCISYGVNSHNKENIREFLNFLQ 123
Query: 126 AHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQP 185
A VR L+KS + SS T+ML+GIPNVGKSALANSLHQIGRI+AAEKGKL+HA VS QP
Sbjct: 124 ARVRELKKSGH--SSHATTMMLVGIPNVGKSALANSLHQIGRISAAEKGKLKHAVVSSQP 181
Query: 186 GETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
GETK+I SLKIASHPNIYVLDTPGI PP+I D+EVCSKLALTGAI D VG + QY L
Sbjct: 182 GETKNISSLKIASHPNIYVLDTPGIFPPKIDDIEVCSKLALTGAIRDILVGEHVIVQYLL 241
Query: 246 GILNFSDEYKKWAKFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQ 297
I+N S +YKKWA S + + S + +R+ P+DHTQ
Sbjct: 242 TIVNSSVKYKKWANLSAISL-----------ECSTPSNLEKQRRRYPSDHTQ 282
>gi|255570795|ref|XP_002526350.1| GTP binding protein, putative [Ricinus communis]
gi|223534309|gb|EEF36021.1| GTP binding protein, putative [Ricinus communis]
Length = 373
Score = 340 bits (873), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 176/297 (59%), Positives = 211/297 (71%), Gaps = 15/297 (5%)
Query: 11 LAREIGTAV---SQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLR 67
LA EIG V S+ + WY PHMAAA+ AIA+R+ LVD ++EVRDARIP SSE L
Sbjct: 2 LASEIGKRVMKASRNREQRWYNPHMAAASSAIAERISLVDFVIEVRDARIPLSSECQLLT 61
Query: 68 NHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAH 127
NH SSRRI+V+NKMDLA+ Q K+WI +F Q+ S+ +NSHNKDNVKEFL FLQ
Sbjct: 62 NHS--DSSRRIIVMNKMDLANRLQLKDWIKYFKQRGFVSYAINSHNKDNVKEFLNFLQGQ 119
Query: 128 VRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGE 187
VR L+ D+ S T+T+M++GIPNVGKSALA SLH IGRI+AAEKGKL+HA V+P PGE
Sbjct: 120 VRGLKNIDH--SGCTITMMMVGIPNVGKSALAKSLHHIGRISAAEKGKLKHAKVTPHPGE 177
Query: 188 TKDIYSLK-------IASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKEL 240
TKDI SLK I SHPNIYVLDTPG+LPP+I D EVC KLALTG D +G +EL
Sbjct: 178 TKDISSLKACSLSLIIGSHPNIYVLDTPGVLPPQIFDAEVCFKLALTGTFRDGLIGEREL 237
Query: 241 AQYFLGILNFSDEYKKWAKFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQ 297
AQYFL ILN SDEYKKWAK S + K T +KA+ + K+++ TDHTQ
Sbjct: 238 AQYFLAILNLSDEYKKWAKLSAREKEKSFT-DNKAECLRDKQLDTEGKKEHLTDHTQ 293
>gi|356528601|ref|XP_003532888.1| PREDICTED: ribosome biogenesis GTPase A-like [Glycine max]
Length = 399
Score = 320 bits (821), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 161/295 (54%), Positives = 211/295 (71%), Gaps = 6/295 (2%)
Query: 6 SSLFKLAREIGTAVSQ---KKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE 62
S+ +L R +GT + + G W P AAA+RAIA+R+PL D++++VRDARIP SSE
Sbjct: 24 SAAARLGRRVGTTAKEELRRNKGAWRDPLPAAASRAIAERIPLADLVVQVRDARIPLSSE 83
Query: 63 FDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLK 122
+ LRN+ P S ++I+ LNKMDL + K W+ +F ++NC S GVN+HNK+N+K+ L
Sbjct: 84 CEILRNYPP--SLKQIVALNKMDLVGTSNVKAWMGYFRERNCISCGVNAHNKENIKQLLS 141
Query: 123 FLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVS 182
+Q V L+ +D ++ T TVML+GIPNVGKSAL N+LHQ+GRI+AAEKGKL+HATVS
Sbjct: 142 LIQRRVSELKGADQCDNNYTATVMLVGIPNVGKSALVNALHQVGRISAAEKGKLKHATVS 201
Query: 183 PQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQ 242
P+PGETKDI S KI SHPNIYVLDTP IL P++ +V++ SKL LTGAIGD V KE+AQ
Sbjct: 202 PEPGETKDIRSFKIGSHPNIYVLDTPAILSPKVPNVDILSKLILTGAIGDCLVRRKEVAQ 261
Query: 243 YFLGILNFSDEYKKWAKFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQ 297
+FL I N S++YKKWAK S+ N L L+ +Q + S M K Q PTDHTQ
Sbjct: 262 HFLAIHNSSEQYKKWAKLSMKD-NDRLFLNGTTEQLTSSGLHMKHKNQIPTDHTQ 315
>gi|224121730|ref|XP_002318658.1| predicted protein [Populus trichocarpa]
gi|222859331|gb|EEE96878.1| predicted protein [Populus trichocarpa]
Length = 338
Score = 280 bits (715), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 156/297 (52%), Positives = 195/297 (65%), Gaps = 41/297 (13%)
Query: 1 MATSSSSLFKLAREIGTAVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFS 60
MA+ S L +EIG A+ + K G WY HMAAA+ AIA R+PL D ILEVRDARIP S
Sbjct: 3 MASRSIGL----KEIGEALKKAKSG-WYSLHMAAASHAIAQRIPLADFILEVRDARIPLS 57
Query: 61 SEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEF 120
S QL ++ P SS RRI+V+NK DLA+ +Q KEW +F+QQNC S+GVNSHNK++VK+F
Sbjct: 58 SHC-QLLSNFPPSSLRRIIVMNKTDLANRSQLKEWTKYFEQQNCISYGVNSHNKEDVKKF 116
Query: 121 LKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHAT 180
L FLQA VR L++ D+ S T T+M++GIPNVGKSALANSLHQ+GRI+AAEKGKL+H
Sbjct: 117 LNFLQAQVRELKRIDH--SGHTTTMMIIGIPNVGKSALANSLHQLGRISAAEKGKLKHTI 174
Query: 181 VSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKEL 240
VSP PGETK+I SLK+ + N+ VG KEL
Sbjct: 175 VSPHPGETKNISSLKVRAIENL--------------------------------VGEKEL 202
Query: 241 AQYFLGILNFSDEYKKWAKFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQ 297
A+YFL ILN SD YKKW + S + +K T + + SS S+ M KRQ P+DHTQ
Sbjct: 203 ARYFLAILNTSDGYKKWERLSTHGNDKSFT-GQEVEGSSDSKLNMKRKRQYPSDHTQ 258
>gi|19225001|gb|AAL86477.1|AC077693_16 putative GTPase domain containing protein [Oryza sativa Japonica
Group]
gi|31433619|gb|AAP55111.1| expressed protein [Oryza sativa Japonica Group]
gi|125533031|gb|EAY79596.1| hypothetical protein OsI_34736 [Oryza sativa Indica Group]
gi|125575767|gb|EAZ17051.1| hypothetical protein OsJ_32544 [Oryza sativa Japonica Group]
Length = 370
Score = 270 bits (691), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 139/274 (50%), Positives = 183/274 (66%), Gaps = 12/274 (4%)
Query: 25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKM 84
G WYG HMAAA RAI R+PLVD++LEVRDAR+P +S F LR P RR++VLNK
Sbjct: 21 GAWYGRHMAAADRAIRSRLPLVDLVLEVRDARVPAASAFAPLRRRSPEPDRRRLVVLNKA 80
Query: 85 DLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVT 144
DLA P+Q ++W+ + Q +C +NSH+++ +KE L ++A +R ++ + D T T
Sbjct: 81 DLADPSQTEKWMAYMKQTSCSCVALNSHSREGIKELLNAVRAKIREIKLGESDC---TGT 137
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
V+L+GIPNVGKSA+ N++H+IGRI AAEKGKL+HA VS PGETKDI K+ASHPNIYV
Sbjct: 138 VLLVGIPNVGKSAIVNAMHRIGRIGAAEKGKLKHAIVSSHPGETKDISGYKVASHPNIYV 197
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
LDTPG+L P + E LALTGAI DS + E+AQ+ L ILN + YKKW ++NQ
Sbjct: 198 LDTPGVLSPVFFNDESGPLLALTGAIKDSMMQEFEIAQFLLAILNSRETYKKWE--NMNQ 255
Query: 265 I-NKPLTLHHKADQSSGSESGMIWKRQNPTDHTQ 297
+ P H + S + KRQ +DHTQ
Sbjct: 256 AGDMPSFSHAMSSSSHHN------KRQYASDHTQ 283
>gi|194698884|gb|ACF83526.1| unknown [Zea mays]
Length = 379
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 140/290 (48%), Positives = 187/290 (64%), Gaps = 14/290 (4%)
Query: 11 LAREIGTAVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQL-RNH 69
++R +G AV + G WYG HMA+A RAI R+PLVD++LEVRDAR P SS F+ L R
Sbjct: 9 VSRRLGAAV-RGLSGAWYGRHMASAERAIRARLPLVDLVLEVRDARAPASSSFEPLLRRR 67
Query: 70 HPFSSSRR-ILVLNKMDLASPTQFKEWITFFDQQN-CPSFGVNSHNKDNVKEFLKFLQAH 127
P RR +++LNK DLA P++ + W+ + +Q C VNSH+++++KE LK +QA
Sbjct: 68 GPLEPDRRAVVLLNKADLADPSETEGWVAYIKKQRRCSCVAVNSHSRESIKEVLKVVQAR 127
Query: 128 VRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGE 187
+R ++ D S+ T T +L+GIPNVGKSA+ N++HQIGRI AAEKGKL+HA VS PGE
Sbjct: 128 MREIKHGD---SNCTGTALLVGIPNVGKSAIVNAIHQIGRIAAAEKGKLKHAIVSSHPGE 184
Query: 188 TKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGI 247
T+DI KIASHPNIYVLDTPG+L P D +LALTGAI DS + + AQ L I
Sbjct: 185 TRDIRGYKIASHPNIYVLDTPGVLSPRFADDGSGPRLALTGAIKDSLLEDYDTAQLLLAI 244
Query: 248 LNFSDEYKKWAKFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQ 297
+N EY+KW K +N+ + + + G K Q +DHTQ
Sbjct: 245 VNSGKEYRKWEK--LNKAGDSFSCGNTI-----TPRGHNSKEQYASDHTQ 287
>gi|357141159|ref|XP_003572110.1| PREDICTED: ribosome biogenesis GTPase A-like [Brachypodium
distachyon]
Length = 373
Score = 257 bits (656), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 140/288 (48%), Positives = 190/288 (65%), Gaps = 12/288 (4%)
Query: 11 LAREIGTAVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHH 70
+R +G AV + G WYG HMAAA RAI R+PLVD++LEVRDARIP +S F+ LR
Sbjct: 10 FSRRLGAAV-RGLSGAWYGRHMAAADRAIRARLPLVDLVLEVRDARIPATSAFEPLRRRS 68
Query: 71 PFS-SSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVR 129
RRI+ LNK DLA P++ ++W+ F Q+ C S +NSH+++++KE L +++ +R
Sbjct: 69 QEDLDGRRIVALNKADLADPSETQKWVAFMKQRGCSSVAINSHSRESIKELLNVVRSKIR 128
Query: 130 NLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETK 189
++ + D T TV+L+GIPNVGKSA+ N++HQIGRI AAEKGKL+HA VS PGET+
Sbjct: 129 EIKLGENDC---TGTVLLVGIPNVGKSAIINAMHQIGRIGAAEKGKLKHAIVSSHPGETR 185
Query: 190 DIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
DI K+ASHPNIYVLDTPGIL E +LALTGAI DS + ++A++ L +LN
Sbjct: 186 DISGYKVASHPNIYVLDTPGILCRTFASDECGPRLALTGAIKDSLLEEHDIAKFLLALLN 245
Query: 250 FSDEYKKWAKFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQ 297
EY+ W ++N++ L AD +SG KRQ +DHTQ
Sbjct: 246 LRKEYRDWD--NLNRMGDKSCL---ADGTSGRSQHT--KRQYSSDHTQ 286
>gi|242040123|ref|XP_002467456.1| hypothetical protein SORBIDRAFT_01g028440 [Sorghum bicolor]
gi|241921310|gb|EER94454.1| hypothetical protein SORBIDRAFT_01g028440 [Sorghum bicolor]
Length = 374
Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 127/254 (50%), Positives = 176/254 (69%), Gaps = 7/254 (2%)
Query: 11 LAREIGTAVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHH 70
++R +G AV + G WYG HMAAA RAI R+PLVD++LEVRDAR+P SS F+ LR
Sbjct: 9 VSRRLGAAV-RDLSGTWYGRHMAAAERAIRARLPLVDLVLEVRDARVPASSSFEPLRRRR 67
Query: 71 -PFS-SSRRILVLNKMDLASPTQFKEWITFFDQQ-NCPSFGVNSHNKDNVKEFLKFLQAH 127
P RR+++LNK DLA P++ +EW+ + +Q +CP VNSH+++++KE L +Q
Sbjct: 68 GPLEPDRRRVVLLNKADLADPSETEEWVAYIKKQTSCPCVAVNSHSRESIKELLNAVQTR 127
Query: 128 VRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGE 187
++ ++ + + T T +L+GIPNVGKSA+ N++HQIGRI AAEKGKL+HA VS PGE
Sbjct: 128 IKEIKNGENNC---TATALLVGIPNVGKSAIVNAMHQIGRIAAAEKGKLKHAIVSSHPGE 184
Query: 188 TKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGI 247
T+DI K+ASHPNIYVLDTPG+L P + +LALTGAI DS + ++ Q+ L I
Sbjct: 185 TRDISGYKVASHPNIYVLDTPGVLSPRFANDGSGPRLALTGAIKDSLLEEYDIVQFLLAI 244
Query: 248 LNFSDEYKKWAKFS 261
+N EY+KW K +
Sbjct: 245 VNSGKEYRKWEKLN 258
>gi|297610975|ref|NP_001065460.2| Os10g0572000 [Oryza sativa Japonica Group]
gi|255679658|dbj|BAF27297.2| Os10g0572000 [Oryza sativa Japonica Group]
Length = 348
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/272 (49%), Positives = 178/272 (65%), Gaps = 17/272 (6%)
Query: 32 MAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ 91
MAAA RAI R+PLVD++LEVRDAR+P +S F LR P RR++VLNK DLA P+Q
Sbjct: 1 MAAADRAIRSRLPLVDLVLEVRDARVPAASAFAPLRRRSPEPDRRRLVVLNKADLADPSQ 60
Query: 92 FKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIP 151
++W+ + Q +C +NSH+++ +KE L ++A +R ++ + D T TV+L+GIP
Sbjct: 61 TEKWMAYMKQTSCSCVALNSHSREGIKELLNAVRAKIREIKLGESDC---TGTVLLVGIP 117
Query: 152 NVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGIL 211
NVGKSA+ N++H+IGRI AAEKGKL+HA VS PGETKDI K+ASHPNIYVLDTPG+L
Sbjct: 118 NVGKSAIVNAMHRIGRIGAAEKGKLKHAIVSSHPGETKDISGYKVASHPNIYVLDTPGVL 177
Query: 212 PPEIHDVEVCSKLALT-----GAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQI- 265
P + E LALT GAI DS + E+AQ+ L ILN + YKKW ++NQ
Sbjct: 178 SPVFFNDESGPLLALTGTSYNGAIKDSMMQEFEIAQFLLAILNSRETYKKWE--NMNQAG 235
Query: 266 NKPLTLHHKADQSSGSESGMIWKRQNPTDHTQ 297
+ P H + S + KRQ +DHTQ
Sbjct: 236 DMPSFSHAMSSSSHHN------KRQYASDHTQ 261
>gi|242034429|ref|XP_002464609.1| hypothetical protein SORBIDRAFT_01g021800 [Sorghum bicolor]
gi|241918463|gb|EER91607.1| hypothetical protein SORBIDRAFT_01g021800 [Sorghum bicolor]
Length = 369
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 119/280 (42%), Positives = 167/280 (59%), Gaps = 18/280 (6%)
Query: 24 GGG---WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILV 80
GGG W+ HMAAA+RAI DR+ L D+++EVRDARIP SS + L S+ RRIL
Sbjct: 19 GGGAVNWFPGHMAAASRAIRDRLKLADLVIEVRDARIPLSSANEDL--QPVLSAKRRILA 76
Query: 81 LNKMDLASPTQFKEWITFFD--QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA 138
LNK DLA+P W+ F+ +Q+C S VN+H+ ++V + L F + L+ + +
Sbjct: 77 LNKKDLANPNIMNRWLNHFESCKQDCIS--VNAHSSNSVNQLLGFAE-----LKLKEAIS 129
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
T+ +ML+G+PNVGKSAL NS+H+I K K + ATV P PG T+DI KIA+
Sbjct: 130 KEPTLLIMLVGVPNVGKSALINSIHRIATSRFPVKDKKKRATVGPLPGVTQDIAGYKIAT 189
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWA 258
P+IYVLDTPG+L P I D+E KLALTGA+ DS VG + +A+Y L +LN W
Sbjct: 190 QPSIYVLDTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLLNIRKTPLHWE 249
Query: 259 KFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQV 298
+ +++ L + S ++ + KR N +D V
Sbjct: 250 RL----LHREEELCEEICSSDKKDNSLRRKRLNNSDAVYV 285
>gi|449463330|ref|XP_004149387.1| PREDICTED: mitochondrial GTPase 1-like [Cucumis sativus]
gi|449503786|ref|XP_004162176.1| PREDICTED: mitochondrial GTPase 1-like [Cucumis sativus]
Length = 375
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 148/229 (64%), Gaps = 10/229 (4%)
Query: 24 GGG---WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILV 80
GGG W+ HMAAATRAI R+ L D+++EVRD+RIP SS L+ H +S RR++
Sbjct: 20 GGGAINWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLSSANQDLQPH--LASKRRVIA 77
Query: 81 LNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASS 140
LNK DLA+P +W+ FFD N +N+H+K +V++ L+ ++ ++ + +
Sbjct: 78 LNKKDLANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLELVEFKLK-----EAISRE 132
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
T+ VM++G+PNVGKSAL NS+HQI + K + ATV P PG T+DI KIA P
Sbjct: 133 PTLLVMVVGVPNVGKSALINSIHQIASERFPVQEKRKRATVGPLPGVTQDIAGYKIAHQP 192
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+IYVLDTPG+L P I D+E KLAL G++ D+ VG + +AQY L +LN
Sbjct: 193 SIYVLDTPGVLVPSIQDIETGLKLALAGSVKDAVVGEERIAQYLLAVLN 241
>gi|30688739|ref|NP_850353.1| P-loop containing nucleoside triphosphate hydrolase-like protein
[Arabidopsis thaliana]
gi|20466544|gb|AAM20589.1| unknown protein [Arabidopsis thaliana]
gi|23198342|gb|AAN15698.1| unknown protein [Arabidopsis thaliana]
gi|32396052|gb|AAP41843.1| short integuments 2 [Arabidopsis thaliana]
gi|330254920|gb|AEC10014.1| P-loop containing nucleoside triphosphate hydrolase-like protein
[Arabidopsis thaliana]
Length = 386
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 152/241 (63%), Gaps = 8/241 (3%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMAAATRAI +R+ L D+++EVRDARIP SS + L++ S+ RRI+ LNK DL
Sbjct: 28 WFPGHMAAATRAIRNRLKLSDLVIEVRDARIPLSSANEDLQSQ--MSAKRRIIALNKKDL 85
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVM 146
A+P +W F+ +N+H++ +V + L ++ L+ + A T+ VM
Sbjct: 86 ANPNVLNKWTRHFESSKQDCIAINAHSRSSVMKLLDLVE-----LKLKEVIAREPTLLVM 140
Query: 147 LLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLD 206
++G+PNVGKSAL NS+HQI + +L+ ATV P PG T+DI KIA P+IYVLD
Sbjct: 141 VVGVPNVGKSALINSIHQIAAARFPVQERLKRATVGPLPGVTQDIAGFKIAHRPSIYVLD 200
Query: 207 TPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQIN 266
+PG+L P I D+E KLAL+G++ DS VG + +AQYFL ILN W K+ + IN
Sbjct: 201 SPGVLVPSIPDIETGLKLALSGSVKDSVVGEERIAQYFLAILNIRGTPLHW-KYLVEGIN 259
Query: 267 K 267
+
Sbjct: 260 E 260
>gi|297824129|ref|XP_002879947.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]
gi|297325786|gb|EFH56206.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]
Length = 386
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 146/231 (63%), Gaps = 7/231 (3%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMAAATRAI +R+ L D+++EVRDARIP SS + L++ S+ RRI+ LNK DL
Sbjct: 28 WFPGHMAAATRAIRNRLKLSDLVIEVRDARIPLSSANEDLQSQ--MSAKRRIIALNKKDL 85
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVM 146
A+P +W F+ +N+H++ +V + L ++ L+ + A T+ VM
Sbjct: 86 ANPNVLNKWTRHFESSKQDCIAINAHSRSSVMKLLDLVE-----LKLKEVIAREPTLLVM 140
Query: 147 LLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLD 206
++G+PNVGKSAL NS+HQI + +L+ ATV P PG T+DI KIA P+IYVLD
Sbjct: 141 VVGVPNVGKSALINSVHQIAAARFPVQERLKRATVGPLPGVTQDIAGFKIAHRPSIYVLD 200
Query: 207 TPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+PG+L P I D+E KLAL+G++ DS VG + +AQYFL ILN W
Sbjct: 201 SPGVLVPSIPDIETGLKLALSGSVKDSVVGEERIAQYFLAILNIRGTPLHW 251
>gi|356504771|ref|XP_003521168.1| PREDICTED: mitochondrial GTPase 1-like [Glycine max]
Length = 377
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 106/246 (43%), Positives = 151/246 (61%), Gaps = 10/246 (4%)
Query: 24 GGG---WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILV 80
GGG W+ HMAAATRAI R+ L D+++EVRDARIP SS L+ H S+ RR++
Sbjct: 22 GGGAITWFPGHMAAATRAIRHRLKLADLVIEVRDARIPLSSANADLQPH--LSAKRRVVA 79
Query: 81 LNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASS 140
LNK DLA+P +W +F+ N +N+H+K +VK+ L+ ++ ++ +
Sbjct: 80 LNKKDLANPNIMHKWTHYFETCNQNCVAINAHSKSSVKKLLEVVEFKLK-----EVICKE 134
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
T+ VM++G+PNVGKSAL NS+HQI + + K++ A V P PG T+DI KIA P
Sbjct: 135 PTLLVMVVGVPNVGKSALINSIHQIAKSRFPVQEKMKRAAVGPLPGVTQDIAGFKIAHKP 194
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKF 260
+IYVLDTPG+L P I D+E KLAL G++ DS VG + + QY L +LN W
Sbjct: 195 SIYVLDTPGVLVPSISDIETGLKLALAGSVKDSVVGEERIVQYLLAVLNTRGTPLHWKHL 254
Query: 261 SINQIN 266
+ +I+
Sbjct: 255 NNRRID 260
>gi|226499776|ref|NP_001151234.1| GTPase family protein [Zea mays]
gi|195645228|gb|ACG42082.1| GTPase family protein [Zea mays]
Length = 369
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 113/257 (43%), Positives = 154/257 (59%), Gaps = 13/257 (5%)
Query: 8 LFKLAREIGTAVSQKKGGG--WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQ 65
L + A+ G GG W+ HMAAA+RAI DR+ L D+I+EVRDARIP SS +
Sbjct: 4 LTRAAKRAGEMAFNAGGGAVNWFPGHMAAASRAIRDRLKLADLIIEVRDARIPLSSANED 63
Query: 66 LRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD--QQNCPSFGVNSHNKDNVKEFLKF 123
L S+ RRIL LNK DLA+P W+ F+ +Q+C S +N+H+ +V + L F
Sbjct: 64 L--QPVLSAKRRILALNKKDLANPNIMNRWLNHFESCKQDCIS--INAHSSSSVNQLLGF 119
Query: 124 LQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSP 183
+ L+ + + T+ +ML+G+PNVGKSAL NS+H+I K K + ATV P
Sbjct: 120 AE-----LKLKEAISKEPTLLIMLVGVPNVGKSALINSIHRIATSRFPAKDKNKRATVGP 174
Query: 184 QPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
PG T+DI KIA+ P+IYVLDTPG+L P I D+E KLALTGA+ DS VG + +A+Y
Sbjct: 175 LPGVTQDIAGYKIATQPSIYVLDTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKY 234
Query: 244 FLGILNFSDEYKKWAKF 260
L + N W +
Sbjct: 235 LLSLFNIKKTPLHWERL 251
>gi|224086974|ref|XP_002308022.1| predicted protein [Populus trichocarpa]
gi|222853998|gb|EEE91545.1| predicted protein [Populus trichocarpa]
Length = 376
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 111/261 (42%), Positives = 163/261 (62%), Gaps = 17/261 (6%)
Query: 24 GGG---WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILV 80
GGG W+ HMAAATRAI DR+ L D+++EVRD+RIP SS + L+ ++ RR++
Sbjct: 21 GGGAINWFPGHMAAATRAIRDRLKLADLVIEVRDSRIPLSSTNEDLQPQ--LAAKRRVIA 78
Query: 81 LNKMDLASPTQFKEWITFFD--QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA 138
LNK DLA+P +WI +FD +Q+C +++H+K +V++ L+ ++ ++ + +
Sbjct: 79 LNKKDLANPNIMHKWIRYFDSCKQDC--IPISAHSKSSVQKLLEVVEFKLK-----EVIS 131
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
T+ VM++G+PNVGKSAL NS+HQI A +GK + ATV P PG T+DI KIA
Sbjct: 132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFAVQGKKKRATVGPLPGVTQDIAGYKIAH 191
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSD---EYK 255
P+IYVLDTPG+L P I D+E KL+L G++ DS VG + +A+Y L +LN +K
Sbjct: 192 KPSIYVLDTPGVLVPSIPDIETGLKLSLAGSVKDSVVGEERIARYLLAVLNTRGTPLHWK 251
Query: 256 KWAKFSINQINKPLTLHHKAD 276
W ++ I HK D
Sbjct: 252 HWNNRKMDGIRYESEEKHKYD 272
>gi|223973159|gb|ACN30767.1| unknown [Zea mays]
Length = 369
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 112/257 (43%), Positives = 154/257 (59%), Gaps = 13/257 (5%)
Query: 8 LFKLAREIGTAVSQKKGGG--WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQ 65
L + A+ G GG W+ HMAAA+RAI DR+ L D+++EVRDARIP SS +
Sbjct: 4 LTRAAKRAGEMAFNAGGGAVNWFPGHMAAASRAIRDRLKLADLVIEVRDARIPLSSANED 63
Query: 66 LRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD--QQNCPSFGVNSHNKDNVKEFLKF 123
L S+ RRIL LNK DLA+P W+ F+ +Q+C S +N+H+ +V + L F
Sbjct: 64 L--QPVLSAKRRILALNKKDLANPNIMNRWLNHFESCKQDCIS--INAHSSSSVNQLLGF 119
Query: 124 LQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSP 183
+ L+ + + T+ +ML+G+PNVGKSAL NS+H+I K K + ATV P
Sbjct: 120 AE-----LKLKEAISKEPTLLIMLVGVPNVGKSALINSIHRIATSRFPAKDKNKRATVGP 174
Query: 184 QPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
PG T+DI KIA+ P+IYVLDTPG+L P I D+E KLALTGA+ DS VG + +A+Y
Sbjct: 175 LPGVTQDIAGYKIATQPSIYVLDTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKY 234
Query: 244 FLGILNFSDEYKKWAKF 260
L + N W +
Sbjct: 235 LLSLFNIKKTPLHWERL 251
>gi|414871398|tpg|DAA49955.1| TPA: GTPase family protein, mRNA [Zea mays]
Length = 373
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 112/257 (43%), Positives = 154/257 (59%), Gaps = 13/257 (5%)
Query: 8 LFKLAREIGTAVSQKKGGG--WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQ 65
L + A+ G GG W+ HMAAA+RAI DR+ L D+++EVRDARIP SS +
Sbjct: 4 LTRAAKRAGEMAFNAGGGAVNWFPGHMAAASRAIRDRLKLADLVIEVRDARIPLSSANED 63
Query: 66 LRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD--QQNCPSFGVNSHNKDNVKEFLKF 123
L S+ RRIL LNK DLA+P W+ F+ +Q+C S +N+H+ +V + L F
Sbjct: 64 L--QPVLSAKRRILALNKKDLANPNIMNRWLNHFESCKQDCIS--INAHSSSSVNQLLGF 119
Query: 124 LQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSP 183
+ L+ + + T+ +ML+G+PNVGKSAL NS+H+I K K + ATV P
Sbjct: 120 AE-----LKLKEAISKEPTLLIMLVGVPNVGKSALINSIHRIATSRFPAKDKNKRATVGP 174
Query: 184 QPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
PG T+DI KIA+ P+IYVLDTPG+L P I D+E KLALTGA+ DS VG + +A+Y
Sbjct: 175 LPGVTQDIAGYKIATQPSIYVLDTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKY 234
Query: 244 FLGILNFSDEYKKWAKF 260
L + N W +
Sbjct: 235 LLSLFNIKKTPLHWERL 251
>gi|414871397|tpg|DAA49954.1| TPA: GTPase family protein [Zea mays]
Length = 368
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 112/257 (43%), Positives = 154/257 (59%), Gaps = 13/257 (5%)
Query: 8 LFKLAREIGTAVSQKKGGG--WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQ 65
L + A+ G GG W+ HMAAA+RAI DR+ L D+++EVRDARIP SS +
Sbjct: 4 LTRAAKRAGEMAFNAGGGAVNWFPGHMAAASRAIRDRLKLADLVIEVRDARIPLSSANED 63
Query: 66 LRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD--QQNCPSFGVNSHNKDNVKEFLKF 123
L S+ RRIL LNK DLA+P W+ F+ +Q+C S +N+H+ +V + L F
Sbjct: 64 L--QPVLSAKRRILALNKKDLANPNIMNRWLNHFESCKQDCIS--INAHSSSSVNQLLGF 119
Query: 124 LQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSP 183
+ L+ + + T+ +ML+G+PNVGKSAL NS+H+I K K + ATV P
Sbjct: 120 AE-----LKLKEAISKEPTLLIMLVGVPNVGKSALINSIHRIATSRFPAKDKNKRATVGP 174
Query: 184 QPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
PG T+DI KIA+ P+IYVLDTPG+L P I D+E KLALTGA+ DS VG + +A+Y
Sbjct: 175 LPGVTQDIAGYKIATQPSIYVLDTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKY 234
Query: 244 FLGILNFSDEYKKWAKF 260
L + N W +
Sbjct: 235 LLSLFNIKKTPLHWERL 251
>gi|2618702|gb|AAB84349.1| unknown protein [Arabidopsis thaliana]
Length = 391
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/246 (43%), Positives = 154/246 (62%), Gaps = 13/246 (5%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMAAATRAI +R+ L D+++EVRDARIP SS + L++ S+ RRI+ LNK DL
Sbjct: 28 WFPGHMAAATRAIRNRLKLSDLVIEVRDARIPLSSANEDLQSQ--MSAKRRIIALNKKDL 85
Query: 87 ASPT-----QFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSD 141
A+P +F +W F+ +N+H++ +V + L ++ L+ + A
Sbjct: 86 ANPNVLNVIRFFKWTRHFESSKQDCIAINAHSRSSVMKLLDLVE-----LKLKEVIAREP 140
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
T+ VM++G+PNVGKSAL NS+HQI + +L+ ATV P PG T+DI KIA P+
Sbjct: 141 TLLVMVVGVPNVGKSALINSIHQIAAARFPVQERLKRATVGPLPGVTQDIAGFKIAHRPS 200
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
IYVLD+PG+L P I D+E KLAL+G++ DS VG + +AQYFL ILN W K+
Sbjct: 201 IYVLDSPGVLVPSIPDIETGLKLALSGSVKDSVVGEERIAQYFLAILNIRGTPLHW-KYL 259
Query: 262 INQINK 267
+ IN+
Sbjct: 260 VEGINE 265
>gi|356572022|ref|XP_003554169.1| PREDICTED: mitochondrial GTPase 1-like [Glycine max]
Length = 377
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 105/246 (42%), Positives = 151/246 (61%), Gaps = 10/246 (4%)
Query: 24 GGG---WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILV 80
GGG W+ HMAAATRAI R+ L D+++EVRDARIPFSS L+ H S+ RR++
Sbjct: 22 GGGAITWFPGHMAAATRAIRHRLKLADLVIEVRDARIPFSSANADLQPH--LSAKRRVVA 79
Query: 81 LNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASS 140
LNK DLA+P +W +F+ N +N+H+ +VK+ L+ ++ ++ +
Sbjct: 80 LNKKDLANPNIMHKWTHYFESCNQNCVAINAHSMSSVKKLLEVVEFKLK-----EVICRE 134
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
T+ VM++G+PNVGKSAL NS+HQI + + K++ A V P PG T+DI KIA P
Sbjct: 135 PTLLVMVVGVPNVGKSALINSIHQIAKSRFPVQEKMKRAAVGPLPGVTQDIAGFKIAHKP 194
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKF 260
+IYVLDTPG+L P I D+E KLAL ++ DS VG + +AQY L +L+ W
Sbjct: 195 SIYVLDTPGVLVPSISDIETGLKLALAESVKDSVVGEERIAQYLLAVLDTRGTPLHWNHL 254
Query: 261 SINQIN 266
+ +I+
Sbjct: 255 NNRRID 260
>gi|218188297|gb|EEC70724.1| hypothetical protein OsI_02108 [Oryza sativa Indica Group]
Length = 370
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 151/242 (62%), Gaps = 14/242 (5%)
Query: 24 GGG---WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILV 80
GGG W+ HMAAA+RAI DR+ L D++LEVRDARIP SS + L +S RRIL
Sbjct: 19 GGGAVNWFPGHMAAASRAIRDRLKLADLVLEVRDARIPLSSANEDL--QPVLASKRRILA 76
Query: 81 LNKMDLASPTQFKEWITFFD--QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA 138
LNK DLA+P W+ F+ +Q+C S +N+H+ +V + L ++ ++ + +
Sbjct: 77 LNKKDLANPNIMNRWLHHFESCKQDCIS--INAHSTSSVSQLLGLVEFKLK-----EAIS 129
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
T+ VM++G+PNVGKSAL NS+H+I + K + ATV P PG T+DI KI+S
Sbjct: 130 KEPTLLVMVVGVPNVGKSALINSIHRIVTSRFPVQDKNKRATVGPLPGVTQDIAGYKISS 189
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWA 258
P+IYVLDTPG+L P I D+E KLALTGA+ DS VG + +A+Y L +LN W
Sbjct: 190 QPSIYVLDTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLLNIRKTPLHWE 249
Query: 259 KF 260
+
Sbjct: 250 RL 251
>gi|115485369|ref|NP_001067828.1| Os11g0447300 [Oryza sativa Japonica Group]
gi|62701701|gb|AAX92774.1| short integuments 2 [Oryza sativa Japonica Group]
gi|77550521|gb|ABA93318.1| GTP-binding proteins, putative, expressed [Oryza sativa Japonica
Group]
gi|113645050|dbj|BAF28191.1| Os11g0447300 [Oryza sativa Japonica Group]
gi|222628343|gb|EEE60475.1| hypothetical protein OsJ_13737 [Oryza sativa Japonica Group]
Length = 370
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 151/242 (62%), Gaps = 14/242 (5%)
Query: 24 GGG---WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILV 80
GGG W+ HMAAA+RAI DR+ L D++LEVRDARIP SS + L +S RRIL
Sbjct: 19 GGGAVNWFPGHMAAASRAIRDRLKLADLVLEVRDARIPLSSANEDL--QPVLASKRRILA 76
Query: 81 LNKMDLASPTQFKEWITFFD--QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA 138
LNK DLA+P W+ F+ +Q+C S +N+H+ +V + L ++ ++ + +
Sbjct: 77 LNKKDLANPNIMNRWLHHFESCKQDCIS--INAHSTSSVSQLLGLVEFKLK-----EAIS 129
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
T+ VM++G+PNVGKSAL NS+H+I + K + ATV P PG T+DI KI+S
Sbjct: 130 KEPTLLVMVVGVPNVGKSALINSIHRIVTSRFPVQDKNKRATVGPLPGVTQDIAGYKISS 189
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWA 258
P+IYVLDTPG+L P I D+E KLALTGA+ DS VG + +A+Y L +LN W
Sbjct: 190 QPSIYVLDTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLLNIRKTPLHWE 249
Query: 259 KF 260
+
Sbjct: 250 RL 251
>gi|326516022|dbj|BAJ88034.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 370
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 145/240 (60%), Gaps = 10/240 (4%)
Query: 24 GGG---WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILV 80
GGG W+ HMAAA+RAI DR+ L D+++EVRDARIP SS + L ++ RRIL
Sbjct: 19 GGGAINWFPGHMAAASRAIRDRLKLADLVIEVRDARIPLSSANEDL--QPVLAAKRRILA 76
Query: 81 LNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASS 140
LNK DLA+P W+ F + +N+H+ +++ + L ++ +R +
Sbjct: 77 LNKKDLANPNIMNMWLDHFQSRKQDCISLNAHSSNSINQLLGLVELKLR-----ESILKE 131
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
T+ VM++G+PNVGKSAL N++H+I K++ A V P PG T+DI KIAS P
Sbjct: 132 PTLLVMVVGVPNVGKSALINAIHRIANSRFPVNDKIKRARVGPLPGVTQDIAGYKIASQP 191
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKF 260
+IYVLDTPG+L P I D+E KLALTGA+ DS VG + +A+Y L +LN W +
Sbjct: 192 SIYVLDTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLLNIRKTPLHWERL 251
>gi|194695134|gb|ACF81651.1| unknown [Zea mays]
Length = 248
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 97/192 (50%), Positives = 135/192 (70%), Gaps = 7/192 (3%)
Query: 11 LAREIGTAVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQL-RNH 69
++R +G AV + G WYG HMA+A RAI R+PLVD++LEVRDAR P SS F+ L R
Sbjct: 9 VSRRLGAAV-RGLSGAWYGRHMASAERAIRARLPLVDLVLEVRDARAPASSSFEPLLRRR 67
Query: 70 HPFSSSRR-ILVLNKMDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAH 127
P RR +++LNK DLA P++ + W+ + Q+ C VNSH+++++KE LK +QA
Sbjct: 68 GPLEPDRRAVVLLNKADLADPSETEGWVAYIKKQRRCSCVAVNSHSRESIKEVLKVVQAR 127
Query: 128 VRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGE 187
+R ++ D S+ T T +L+GIPNVGKSA+ N++HQIGRI AAEKGKL+HA VS PGE
Sbjct: 128 MREIKHGD---SNCTGTALLVGIPNVGKSAIVNAIHQIGRIAAAEKGKLKHAIVSSHPGE 184
Query: 188 TKDIYSLKIASH 199
T+DI K++S+
Sbjct: 185 TRDIRGYKVSSY 196
>gi|225441868|ref|XP_002284232.1| PREDICTED: mitochondrial GTPase 1 isoform 2 [Vitis vinifera]
Length = 377
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 157/250 (62%), Gaps = 14/250 (5%)
Query: 23 KGGG---WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRIL 79
KGGG W+ HMAAATRAI R+ + D+++EVRDAR+P SS + L+ S RR++
Sbjct: 20 KGGGAINWFPGHMAAATRAIRHRLKVSDLVIEVRDARLPLSSANEDLQPS--LSGKRRVI 77
Query: 80 VLNKMDLASPTQFKEWITFFD--QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD 137
LNK DLA+P +W +FD +Q+C S +N+H++ +VK+ L+ ++ +R +
Sbjct: 78 ALNKKDLANPNIMHKWTHYFDSCKQDCIS--INAHSRSSVKKLLELVELKLR-----EVI 130
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ T+ VM++G+PNVGKSAL NS+HQI + K++ ATV P PG T+DI KIA
Sbjct: 131 SREPTLLVMVVGVPNVGKSALINSIHQIATSRFPVQEKMKRATVGPLPGVTQDIAGFKIA 190
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
P+IYVLDTPG+L P I D+E KLAL G++ DS VG + +AQY L +LN W
Sbjct: 191 HQPSIYVLDTPGVLVPSIPDIETGLKLALAGSVKDSVVGEERIAQYLLAVLNTRSTPLHW 250
Query: 258 AKFSINQINK 267
+ +I +
Sbjct: 251 RHLNNRRIEE 260
>gi|225441866|ref|XP_002284228.1| PREDICTED: mitochondrial GTPase 1 isoform 1 [Vitis vinifera]
Length = 376
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 157/250 (62%), Gaps = 14/250 (5%)
Query: 23 KGGG---WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRIL 79
KGGG W+ HMAAATRAI R+ + D+++EVRDAR+P SS + L+ S RR++
Sbjct: 19 KGGGAINWFPGHMAAATRAIRHRLKVSDLVIEVRDARLPLSSANEDLQPS--LSGKRRVI 76
Query: 80 VLNKMDLASPTQFKEWITFFD--QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD 137
LNK DLA+P +W +FD +Q+C S +N+H++ +VK+ L+ ++ +R +
Sbjct: 77 ALNKKDLANPNIMHKWTHYFDSCKQDCIS--INAHSRSSVKKLLELVELKLR-----EVI 129
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ T+ VM++G+PNVGKSAL NS+HQI + K++ ATV P PG T+DI KIA
Sbjct: 130 SREPTLLVMVVGVPNVGKSALINSIHQIATSRFPVQEKMKRATVGPLPGVTQDIAGFKIA 189
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
P+IYVLDTPG+L P I D+E KLAL G++ DS VG + +AQY L +LN W
Sbjct: 190 HQPSIYVLDTPGVLVPSIPDIETGLKLALAGSVKDSVVGEERIAQYLLAVLNTRSTPLHW 249
Query: 258 AKFSINQINK 267
+ +I +
Sbjct: 250 RHLNNRRIEE 259
>gi|297739639|emb|CBI29821.3| unnamed protein product [Vitis vinifera]
Length = 362
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 156/250 (62%), Gaps = 14/250 (5%)
Query: 23 KGGG---WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRIL 79
KGGG W+ HMAAATRAI R+ + D+++EVRDAR+P SS + L+ S RR++
Sbjct: 5 KGGGAINWFPGHMAAATRAIRHRLKVSDLVIEVRDARLPLSSANEDLQPS--LSGKRRVI 62
Query: 80 VLNKMDLASPTQFKEWITFFD--QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD 137
LNK DLA+P +W +FD +Q+C +N+H++ +VK+ L+ ++ +R +
Sbjct: 63 ALNKKDLANPNIMHKWTHYFDSCKQDC--ISINAHSRSSVKKLLELVELKLR-----EVI 115
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ T+ VM++G+PNVGKSAL NS+HQI + K++ ATV P PG T+DI KIA
Sbjct: 116 SREPTLLVMVVGVPNVGKSALINSIHQIATSRFPVQEKMKRATVGPLPGVTQDIAGFKIA 175
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
P+IYVLDTPG+L P I D+E KLAL G++ DS VG + +AQY L +LN W
Sbjct: 176 HQPSIYVLDTPGVLVPSIPDIETGLKLALAGSVKDSVVGEERIAQYLLAVLNTRSTPLHW 235
Query: 258 AKFSINQINK 267
+ +I +
Sbjct: 236 RHLNNRRIEE 245
>gi|357156842|ref|XP_003577594.1| PREDICTED: ribosome biogenesis GTPase A-like [Brachypodium
distachyon]
Length = 372
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/240 (44%), Positives = 148/240 (61%), Gaps = 10/240 (4%)
Query: 24 GGG---WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILV 80
GGG W+ HMAAA+RAI DR+ L D+++EVRD+RIP SS + L S+ RRIL
Sbjct: 19 GGGVINWFPGHMAAASRAIRDRLKLADLVIEVRDSRIPLSSANEDL--QPVLSAKRRILA 76
Query: 81 LNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASS 140
LNK DLA+P W+ F+ + +NSH+ +++ + L ++ L+ +
Sbjct: 77 LNKKDLANPNMMNMWLDHFESRKQDCISINSHSSNSINQLLGLVE-----LKLKEAILKE 131
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
T+ VM++G+PNVGKSAL NS+H+I R K++ ATV P PG T+DI KIAS P
Sbjct: 132 PTLLVMVVGVPNVGKSALINSIHRIARSRFPVNDKIKRATVGPLPGVTQDIAGYKIASQP 191
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKF 260
+IYVLDTPG+L P I D+E KLALTGA+ DS VG + +A+Y L +LN W +
Sbjct: 192 SIYVLDTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLLNIRKTPLHWERL 251
>gi|357509687|ref|XP_003625132.1| Mitochondrial GTPase [Medicago truncatula]
gi|355500147|gb|AES81350.1| Mitochondrial GTPase [Medicago truncatula]
Length = 373
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 149/239 (62%), Gaps = 14/239 (5%)
Query: 24 GGG---WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILV 80
GGG W+ HMAAATRAI +R+ L D+++EVRDARIP SS L+ H S RR++
Sbjct: 20 GGGLINWFPGHMAAATRAIRNRLKLADLVIEVRDARIPISSINSDLQPH--LSLKRRVVA 77
Query: 81 LNKMDLASPTQFKEWITFFD--QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA 138
LNK DLA+P +W+ +F+ +Q+C +N+H+K +V + L+ ++ + +
Sbjct: 78 LNKKDLANPNIMHKWVNYFESCKQDC--IPINAHSKSSVTKLLELVELK-----LKEAIS 130
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
T+ VM++G+PNVGKS L NS+HQI + K++ A V P PG T+DI KIA+
Sbjct: 131 KEPTLLVMVVGVPNVGKSCLINSIHQIAHSRFPVQEKMKRAAVGPLPGVTQDIAGFKIAN 190
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
P+IYVLDTPG+L P I D+E KLAL G++ DS VG + +AQY L +LN W
Sbjct: 191 KPSIYVLDTPGVLVPSISDIETGLKLALAGSVKDSVVGEERIAQYLLAVLNTRGTPLHW 249
>gi|255585496|ref|XP_002533440.1| GTP binding protein, putative [Ricinus communis]
gi|223526714|gb|EEF28947.1| GTP binding protein, putative [Ricinus communis]
Length = 375
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 145/237 (61%), Gaps = 9/237 (3%)
Query: 15 IGTAVSQKKGG--GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPF 72
+G +GG W+ HMAAATRAI R+ L D+++EVRD+RIP SS + L+ H
Sbjct: 13 LGEMSFNSEGGVINWFPGHMAAATRAIRSRLKLADLVIEVRDSRIPLSSANNDLQPH--L 70
Query: 73 SSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLR 132
+S RR++ LNK DLA+ +W+ +F+ S VNSH+K +V + L+
Sbjct: 71 NSKRRVIALNKKDLANANVMHKWVHYFNSCKQDSIPVNSHSKSSV-----MKLLELVELK 125
Query: 133 KSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY 192
+ + T+ VM++G+PNVGKSAL NS+HQI + K + ATV P PG T+DI
Sbjct: 126 LKEVISREPTLLVMVVGVPNVGKSALINSIHQIASSRFPVQEKKKRATVGPLPGVTQDIA 185
Query: 193 SLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
KIA P+IYVLDTPG+L P I D+E KLAL G++ DS VG + +AQY L +LN
Sbjct: 186 GYKIAHQPSIYVLDTPGVLVPSIPDIETGLKLALAGSVKDSAVGEERIAQYLLAVLN 242
>gi|168023788|ref|XP_001764419.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684283|gb|EDQ70686.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 338
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/258 (40%), Positives = 151/258 (58%), Gaps = 18/258 (6%)
Query: 4 SSSSLFKLAREIGTAVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS-- 61
S LF LA + G + WY HMA+AT+AI +R+ +VD+++EVRDARIP SS
Sbjct: 2 SKKGLFGLASKAGDVAAI----NWYPGHMASATKAIRERIKVVDLVVEVRDARIPLSSAN 57
Query: 62 -EFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEF 120
EF L +R++V NKMDLA+P +W + F + N VN+H +V++
Sbjct: 58 SEFQDL-----LERKKRLIVCNKMDLANPNMTLKWESHFQKLNQRLVFVNAHQTKSVRKM 112
Query: 121 LKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGR-ITAAEKGKLRHA 179
L+ +R + A T+ +M++GIPNVGKSAL N+L + I +E+ L+ A
Sbjct: 113 LEVAWDLLR-----EKLAKEPTLLLMIVGIPNVGKSALINTLFRHAHAIAKSEQEHLKKA 167
Query: 180 TVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKE 239
V P PG T+ I KI P++YVLDTPG+L P I +++ KLALTGA+ DS VG +
Sbjct: 168 KVGPLPGVTQHISGFKIGEKPSVYVLDTPGVLVPNIDNIDTGLKLALTGAVKDSVVGEER 227
Query: 240 LAQYFLGILNFSDEYKKW 257
+A+Y L +LN + +W
Sbjct: 228 VARYLLSVLNARSSHLRW 245
>gi|4539443|emb|CAB40031.1| putative protein [Arabidopsis thaliana]
gi|7267763|emb|CAB81166.1| putative protein [Arabidopsis thaliana]
Length = 332
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 124/333 (37%), Positives = 161/333 (48%), Gaps = 103/333 (30%)
Query: 1 MATSSSSLFKLAREIGTAV---SQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARI 57
MAT+ + +K+AREIG AV S+ WYGPHMAAA RAI++R+PLVD +LE+RDARI
Sbjct: 1 MATAKT--WKIAREIGDAVIKASRNPNRRWYGPHMAAAVRAISERIPLVDFVLEIRDARI 58
Query: 58 PFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNV 117
P SSE++ LR P S+RI+VLNKM+LA P + K+ I +F+++N S+ VNSHNKD V
Sbjct: 59 PLSSEYELLRKFSPL-PSKRIIVLNKMELADPLELKKCIDYFEERNYLSYAVNSHNKDCV 117
Query: 118 KEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLR 177
K+ +S L L I + G
Sbjct: 118 KQ-----------------------------------ESPLFQILFIISEGLVLQIGSHP 142
Query: 178 HATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALT---------- 227
+ V PG I+ PN+Y D E+C+KLALT
Sbjct: 143 NVYVLDTPG----IFP------PNLY-------------DAEICAKLALTGLISTKHKQN 179
Query: 228 -----------------------GAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
GAI D VG +LA+ FL ILN S EYKKWAK +Q
Sbjct: 180 DYIPVKVLFLYSHSRIAQRAYWVGAIPDDIVGELKLARLFLTILNSSHEYKKWAKLCKSQ 239
Query: 265 INKPLTLHHKADQSSGSESGMIWKRQNPTDHTQ 297
LT +D+SS S++ KRQ TDHTQ
Sbjct: 240 ---DLT-ESLSDESSKSDAKH--KRQYATDHTQ 266
>gi|302794602|ref|XP_002979065.1| hypothetical protein SELMODRAFT_177376 [Selaginella moellendorffii]
gi|302819739|ref|XP_002991539.1| hypothetical protein SELMODRAFT_269818 [Selaginella moellendorffii]
gi|300140741|gb|EFJ07461.1| hypothetical protein SELMODRAFT_269818 [Selaginella moellendorffii]
gi|300153383|gb|EFJ20022.1| hypothetical protein SELMODRAFT_177376 [Selaginella moellendorffii]
Length = 348
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 119/210 (56%), Gaps = 12/210 (5%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A R I R VD++LE+RDARIP SS D+L S + ++V+NKMDL
Sbjct: 13 WYPGHMVKAMRDIQQRFKYVDLVLEIRDARIPLSSANDELGEF--ISKKKHVIVMNKMDL 70
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVM 146
AS W +F+ Q VN+H+K +V + ++ R + T+ VM
Sbjct: 71 ASSNMIHNWKKYFEAQGQVPIYVNAHSKHSVHSMVVDIKE-----RLAGAIQKEATLLVM 125
Query: 147 LLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLD 206
+ GIPNVGKS L N+L+Q A +G+ + A V P PG TK I KI P+IY+LD
Sbjct: 126 IAGIPNVGKSVLTNALYQ-----ATVQGRPKKAQVGPLPGVTKIISGFKIGQCPSIYLLD 180
Query: 207 TPGILPPEIHDVEVCSKLALTGAIGDSFVG 236
TPG+L P I VE KLA+TGA+ DS +G
Sbjct: 181 TPGVLIPNIKSVETGLKLAITGAVKDSVIG 210
>gi|399155736|ref|ZP_10755803.1| GTPase YlqF [SAR324 cluster bacterium SCGC AAA001-C10]
Length = 306
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 135/248 (54%), Gaps = 32/248 (12%)
Query: 13 REIGTAVSQKKGG-----GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFD 64
REI T KG WY HM AT+ +A ++ VD++LE+RDARIP SS +F+
Sbjct: 6 REIETPEQLGKGWDTPDINWYPGHMLKATKELAKQLKRVDVVLEMRDARIPVSSANHDFE 65
Query: 65 QLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL--- 121
+L +RIL+ NK +LA ++W +F + + PS V++ NK N++E L
Sbjct: 66 KL-----LQQKKRILLFNKTNLADEDTTRKWKAYFKKMDTPSLFVDALNKQNLQEILPLS 120
Query: 122 -KFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHAT 180
K +Q N RK S + +++ GIPNVGKS+L N L R AAE G
Sbjct: 121 RKLMQEKWSNFRKRGIRPPS--LKLLITGIPNVGKSSLINRL---SRRKAAETG------ 169
Query: 181 VSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKEL 240
P PG TK +K+ ++ +LDTPGIL P+I + E +L +TGAI DS VG L
Sbjct: 170 --PTPGVTKHQDWIKLGK--DVELLDTPGILWPKIENREAGLRLTITGAIKDSIVGTSLL 225
Query: 241 AQYFLGIL 248
+ Y LGIL
Sbjct: 226 SDYLLGIL 233
>gi|383792146|ref|NP_001244302.1| mitochondrial GTPase 1 homolog [Gallus gallus]
Length = 329
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 126/241 (52%), Gaps = 23/241 (9%)
Query: 22 KKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS------EFDQLRNHHPFSSS 75
+ W+ HMA R + + D ++EV DARIP S E +R H
Sbjct: 34 RDAASWFPGHMAKGLRQMRASLRRADCLVEVHDARIPLSGRNPVLQEVLGIRPH------ 87
Query: 76 RRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKS 134
+LVLNKMDLA P Q + QQ C +D NVK+ + + A + N
Sbjct: 88 --LLVLNKMDLADPRQQSRVLEQLRQQGCSYVVFTDCQRDSNVKKIVPLV-AKLVNSSPR 144
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS- 193
+ A S ++M++G+PNVGKS+L NSL ++ +KGK V +PG TK + +
Sbjct: 145 YHRAESTEYSIMVIGVPNVGKSSLINSLRRL----HLKKGK--ATAVGGEPGVTKAVLTR 198
Query: 194 LKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDE 253
+++ P +Y++DTPG+LPP++ DVE KLAL GAI D VG +A Y L +LN +
Sbjct: 199 IQVCETPLVYLVDTPGVLPPKLADVETGMKLALCGAIRDHLVGEDIMADYLLYVLNQQQQ 258
Query: 254 Y 254
+
Sbjct: 259 F 259
>gi|392989833|ref|YP_006488426.1| GTPase [Enterococcus hirae ATCC 9790]
gi|392337253|gb|AFM71535.1| GTPase [Enterococcus hirae ATCC 9790]
Length = 286
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 130/261 (49%), Gaps = 32/261 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R ++++M VDI+ E+ DAR+P SS DQ+ P R+++LNK
Sbjct: 5 WFPGHMAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQKP-----RLVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD--YDASSD 141
DLA P Q K W T+F QQ + + + +K + + ++ R D
Sbjct: 60 ADLADPQQTKLWQTYFQQQGHQALAITAQESKGIKALIPEAKEALKEKRARDAARGIKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M+LGIPNVGKS L N L +G+ + A +PG TK L++ S
Sbjct: 120 AIRAMVLGIPNVGKSTLMNRL--VGK---------KIAQTGNKPGVTKGQQWLRLGSE-- 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
+ +LDTPGIL P+ D E+ KLALTGAI D V +LA Y L +A++
Sbjct: 167 LELLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGLDF---------FARYY 217
Query: 262 INQINKPLTLHHKADQSSGSE 282
+I + L +A+Q E
Sbjct: 218 PGRIAERYQLPEEAEQQLAPE 238
>gi|415886553|ref|ZP_11548333.1| ribosomal biogenesis GTPase [Bacillus methanolicus MGA3]
gi|387587240|gb|EIJ79563.1| ribosomal biogenesis GTPase [Bacillus methanolicus MGA3]
Length = 290
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 128/247 (51%), Gaps = 33/247 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R +++++ LVDII E+ DARIP+SS D++ H P R+L+LNK
Sbjct: 5 WFPGHMAKARREVSEKLKLVDIIFELVDARIPYSSRNPMIDEIIQHKP-----RLLLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
D+A ++ KEWI +F+ + +NS +KE + A R + K +D
Sbjct: 60 SDMADQSKTKEWIQYFNMNGIRALAINSQAGTGMKEIV----ALSREILKEKFDRMKAKG 115
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ M++GIPN GKS L N L R A+ G PG TK +K+
Sbjct: 116 VKPRAIRAMIVGIPNSGKSTLINRL---ARKNIAKTGN--------TPGVTKAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYK 255
+ +LDTPGIL P+ D EV KLALTGAI D+ + +++A Y L L + D K
Sbjct: 165 KE--LELLDTPGILWPKFEDEEVGLKLALTGAIKDTILNLQDVAVYALRFLEREYPDRLK 222
Query: 256 KWAKFSI 262
+ + I
Sbjct: 223 ERYQLEI 229
>gi|422809350|ref|ZP_16857761.1| 50S ribosomal subunit maturation GTPase RbgA [Listeria
monocytogenes FSL J1-208]
gi|378752964|gb|EHY63549.1| 50S ribosomal subunit maturation GTPase RbgA [Listeria
monocytogenes FSL J1-208]
Length = 287
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 117/241 (48%), Gaps = 27/241 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ LVD+I E+ DARIP SS L RR+++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPML--EEIIHQKRRVIILNKADT 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ASS 140
A KEWI +F ++ P+ VN+ K K QA L +D
Sbjct: 63 ADEKTTKEWIDYFAEKGLPAVAVNAQEG---KGLFKIEQA-AEKLMAEKFDRLRSKGMKP 118
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ M+LGIPNVGKS L N L K A +PG TK +K+
Sbjct: 119 RAIRAMILGIPNVGKSTLINRL-----------AKKNIARTGNKPGVTKAQQWIKVGK-- 165
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKWA 258
+ +LDTPGIL P+ D E+ KLALTGAI D + +E+A Y L L + D + W
Sbjct: 166 TLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFLENHYPDRLQNWL 225
Query: 259 K 259
K
Sbjct: 226 K 226
>gi|46907499|ref|YP_013888.1| ribosomal biogenesis GTPase [Listeria monocytogenes serotype 4b
str. F2365]
gi|47093920|ref|ZP_00231659.1| GTPase family protein [Listeria monocytogenes str. 4b H7858]
gi|226223875|ref|YP_002757982.1| hypothetical protein Lm4b_01282 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254824667|ref|ZP_05229668.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J1-194]
gi|254852674|ref|ZP_05242022.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL R2-503]
gi|254932411|ref|ZP_05265770.1| ribosomal biogenesis GTPase [Listeria monocytogenes HPB2262]
gi|255520254|ref|ZP_05387491.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J1-175]
gi|300765308|ref|ZP_07075292.1| GTPase family protein [Listeria monocytogenes FSL N1-017]
gi|386732012|ref|YP_006205508.1| GTPase YlqF [Listeria monocytogenes 07PF0776]
gi|404280827|ref|YP_006681725.1| GTPase family protein [Listeria monocytogenes SLCC2755]
gi|404286688|ref|YP_006693274.1| GTPase family protein [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405749616|ref|YP_006673082.1| GTPase family protein [Listeria monocytogenes ATCC 19117]
gi|405752491|ref|YP_006675956.1| GTPase family protein [Listeria monocytogenes SLCC2378]
gi|405755402|ref|YP_006678866.1| GTPase family protein [Listeria monocytogenes SLCC2540]
gi|406704045|ref|YP_006754399.1| GTPase family protein [Listeria monocytogenes L312]
gi|417313732|ref|ZP_12100439.1| GTPase YlqF [Listeria monocytogenes J1816]
gi|417317426|ref|ZP_12104044.1| GTPase YlqF [Listeria monocytogenes J1-220]
gi|424714147|ref|YP_007014862.1| Ribosome biogenesis GTPase A [Listeria monocytogenes serotype 4b
str. LL195]
gi|424823037|ref|ZP_18248050.1| Ribosome biogenesis GTPase A [Listeria monocytogenes str. Scott A]
gi|46880767|gb|AAT04065.1| GTPase family protein [Listeria monocytogenes serotype 4b str.
F2365]
gi|47017706|gb|EAL08500.1| GTPase family protein [Listeria monocytogenes str. 4b H7858]
gi|225876337|emb|CAS05046.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258605992|gb|EEW18600.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL R2-503]
gi|293583968|gb|EFF96000.1| ribosomal biogenesis GTPase [Listeria monocytogenes HPB2262]
gi|293593906|gb|EFG01667.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J1-194]
gi|300513991|gb|EFK41054.1| GTPase family protein [Listeria monocytogenes FSL N1-017]
gi|328468562|gb|EGF39562.1| GTPase YlqF [Listeria monocytogenes J1816]
gi|328475116|gb|EGF45900.1| GTPase YlqF [Listeria monocytogenes J1-220]
gi|332311717|gb|EGJ24812.1| Ribosome biogenesis GTPase A [Listeria monocytogenes str. Scott A]
gi|384390770|gb|AFH79840.1| GTPase YlqF [Listeria monocytogenes 07PF0776]
gi|404218816|emb|CBY70180.1| GTPase family protein [Listeria monocytogenes ATCC 19117]
gi|404221691|emb|CBY73054.1| GTPase family protein [Listeria monocytogenes SLCC2378]
gi|404224602|emb|CBY75964.1| GTPase family protein [Listeria monocytogenes SLCC2540]
gi|404227462|emb|CBY48867.1| GTPase family protein [Listeria monocytogenes SLCC2755]
gi|404245617|emb|CBY03842.1| GTPase family protein [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406361075|emb|CBY67348.1| GTPase family protein [Listeria monocytogenes L312]
gi|424013331|emb|CCO63871.1| Ribosome biogenesis GTPase A [Listeria monocytogenes serotype 4b
str. LL195]
Length = 287
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 117/241 (48%), Gaps = 27/241 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ LVD+I E+ DARIP SS L RR+++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPML--EEIIHQKRRVIILNKADT 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ASS 140
A KEWI +F ++ P+ VN+ K K QA L +D
Sbjct: 63 ADEKTTKEWIDYFAEKGLPAVAVNAQEG---KGLFKIEQA-AEKLMAEKFDRLRSKGMKP 118
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ M+LGIPNVGKS L N L K A +PG TK +K+
Sbjct: 119 RAIRAMILGIPNVGKSTLINRL-----------AKKNIARTGNKPGVTKAQQWIKVGK-- 165
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKWA 258
+ +LDTPGIL P+ D E+ KLALTGAI D + +E+A Y L L + D + W
Sbjct: 166 TLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFLEKHYPDRLQNWL 225
Query: 259 K 259
K
Sbjct: 226 K 226
>gi|315302907|ref|ZP_07873643.1| ribosome biogenesis GTP-binding protein YlqF [Listeria ivanovii FSL
F6-596]
gi|313628721|gb|EFR97118.1| ribosome biogenesis GTP-binding protein YlqF [Listeria ivanovii FSL
F6-596]
Length = 287
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 117/241 (48%), Gaps = 27/241 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ LVD+I E+ DARIP SS L RR+++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPML--EEIIHQKRRVIILNKADT 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ASS 140
A KEWI +F ++ P+ VN+ K K QA L +D
Sbjct: 63 ADEKTTKEWIDYFAEKGLPAVAVNAQEG---KGLFKIEQA-AEKLMAEKFDRLRSKGMKP 118
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ M+LGIPNVGKS L N L K A +PG TK +K+
Sbjct: 119 RAIRAMILGIPNVGKSTLINRL-----------AKKNIARTGNKPGVTKAQQWIKVGK-- 165
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKWA 258
+ +LDTPGIL P+ D E+ KLALTGAI D + +E+A Y L L + D + W
Sbjct: 166 TLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFLEQHYPDRLENWL 225
Query: 259 K 259
K
Sbjct: 226 K 226
>gi|255022620|ref|ZP_05294606.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J1-208]
Length = 287
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 117/241 (48%), Gaps = 27/241 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ LVD+I E+ DARIP SS L RR+++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPML--EEIIHQKRRVIILNKADT 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ASS 140
A KEWI +F ++ P+ VN+ K K QA L +D
Sbjct: 63 ADEKTTKEWIDYFAEKGLPAVAVNAQEG---KGLFKIEQA-AEKLMAEKFDRLRSKGMKP 118
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ M+LGIPNVGKS L N L K A +PG TK +K+
Sbjct: 119 RAIRAMILGIPNVGKSTLINRL-----------AKKNIARTGNKPGVTKAQQWIKVGK-- 165
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKWA 258
+ +LDTPGIL P+ D E+ KLALTGAI D + +E+A Y L L + D + W
Sbjct: 166 TLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFLENHYPDRLQNWL 225
Query: 259 K 259
K
Sbjct: 226 K 226
>gi|289434556|ref|YP_003464428.1| HSR1-related GTPase [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289170800|emb|CBH27342.1| HSR1-related GTPase family protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
Length = 287
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 117/241 (48%), Gaps = 27/241 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ LVD+I E+ DARIP SS L RR+++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPML--EEIIHQKRRVIILNKADT 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ASS 140
A KEWI +F ++ P+ VN+ K K QA L +D
Sbjct: 63 ADEKTTKEWIDYFAEKGLPAVAVNAQEG---KGLFKIEQA-AEKLMAEKFDRLRSKGMKP 118
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ M+LGIPNVGKS L N L K A +PG TK +K+
Sbjct: 119 RAIRAMILGIPNVGKSTLINRL-----------AKKNIARTGNKPGVTKAQQWIKVGK-- 165
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKWA 258
+ +LDTPGIL P+ D E+ KLALTGAI D + +E+A Y L L + D + W
Sbjct: 166 TLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFLEKHYPDRLENWL 225
Query: 259 K 259
K
Sbjct: 226 K 226
>gi|16803312|ref|NP_464797.1| ribosomal biogenesis GTPase [Listeria monocytogenes EGD-e]
gi|47097415|ref|ZP_00234964.1| GTPase family protein [Listeria monocytogenes str. 1/2a F6854]
gi|254828635|ref|ZP_05233322.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL N3-165]
gi|254911947|ref|ZP_05261959.1| ribosomal biogenesis GTPase [Listeria monocytogenes J2818]
gi|254936273|ref|ZP_05267970.1| ribosomal biogenesis GTPase [Listeria monocytogenes F6900]
gi|255025708|ref|ZP_05297694.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J2-003]
gi|284801657|ref|YP_003413522.1| ribosomal biogenesis GTPase [Listeria monocytogenes 08-5578]
gi|284994799|ref|YP_003416567.1| ribosomal biogenesis GTPase [Listeria monocytogenes 08-5923]
gi|386043583|ref|YP_005962388.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes 10403S]
gi|386046923|ref|YP_005965255.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes J0161]
gi|386050248|ref|YP_005968239.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL R2-561]
gi|404283763|ref|YP_006684660.1| GTPase family protein [Listeria monocytogenes SLCC2372]
gi|404410569|ref|YP_006696157.1| GTPase family protein [Listeria monocytogenes SLCC5850]
gi|404413348|ref|YP_006698935.1| GTPase family protein [Listeria monocytogenes SLCC7179]
gi|405758319|ref|YP_006687595.1| GTPase family protein [Listeria monocytogenes SLCC2479]
gi|16410688|emb|CAC99350.1| lmo1272 [Listeria monocytogenes EGD-e]
gi|47014214|gb|EAL05198.1| GTPase family protein [Listeria monocytogenes str. 1/2a F6854]
gi|258601034|gb|EEW14359.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL N3-165]
gi|258608862|gb|EEW21470.1| ribosomal biogenesis GTPase [Listeria monocytogenes F6900]
gi|284057219|gb|ADB68160.1| ribosomal biogenesis GTPase [Listeria monocytogenes 08-5578]
gi|284060266|gb|ADB71205.1| ribosomal biogenesis GTPase [Listeria monocytogenes 08-5923]
gi|293589908|gb|EFF98242.1| ribosomal biogenesis GTPase [Listeria monocytogenes J2818]
gi|345533914|gb|AEO03355.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes J0161]
gi|345536817|gb|AEO06257.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes 10403S]
gi|346424094|gb|AEO25619.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL R2-561]
gi|404230395|emb|CBY51799.1| GTPase family protein [Listeria monocytogenes SLCC5850]
gi|404233265|emb|CBY54668.1| GTPase family protein [Listeria monocytogenes SLCC2372]
gi|404236201|emb|CBY57603.1| GTPase family protein [Listeria monocytogenes SLCC2479]
gi|404239047|emb|CBY60448.1| GTPase family protein [Listeria monocytogenes SLCC7179]
gi|441470942|emb|CCQ20697.1| Ribosome biogenesis GTPase A [Listeria monocytogenes]
gi|441474069|emb|CCQ23823.1| Ribosome biogenesis GTPase A [Listeria monocytogenes N53-1]
Length = 287
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 117/241 (48%), Gaps = 27/241 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ LVD+I E+ DARIP SS L RR+++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPML--EEIIHQKRRVIILNKADT 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ASS 140
A KEWI +F ++ P+ VN+ K K QA L +D
Sbjct: 63 ADEKTTKEWIDYFAEKGLPAVAVNAQEG---KGLFKIEQA-AEKLMAEKFDRLRSKGMKP 118
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ M+LGIPNVGKS L N L K A +PG TK +K+
Sbjct: 119 RAIRAMILGIPNVGKSTLINRL-----------AKKNIARTGNKPGVTKAQQWIKVGK-- 165
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKWA 258
+ +LDTPGIL P+ D E+ KLALTGAI D + +E+A Y L L + D + W
Sbjct: 166 TLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFLENHYPDRLQTWL 225
Query: 259 K 259
K
Sbjct: 226 K 226
>gi|423100352|ref|ZP_17088059.1| ribosome biogenesis GTP-binding protein YlqF [Listeria innocua ATCC
33091]
gi|370793353|gb|EHN61191.1| ribosome biogenesis GTP-binding protein YlqF [Listeria innocua ATCC
33091]
Length = 288
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 117/240 (48%), Gaps = 25/240 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ LVD+I E+ DARIP SS L RR+++LNK D
Sbjct: 6 WFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPML--EEIIHQKRRVIILNKADT 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL-----RKSDYDASSD 141
A KEWI +F ++ P+ VN+ K K QA + + R
Sbjct: 64 ADEKTTKEWIDYFAEKGLPAVAVNAQEG---KGLFKIEQAAEKLMAEKFERLRSKGMKPR 120
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M+LGIPNVGKS L N L K A +PG TK +K+
Sbjct: 121 AIRAMILGIPNVGKSTLINRL-----------AKKNIARTGNKPGVTKAQQWIKVGK--T 167
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKWAK 259
+ +LDTPGIL P+ D E+ KLALTGAI D + +E+A Y L L + D + W K
Sbjct: 168 LELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFLEKHYPDRLQNWLK 227
>gi|422418869|ref|ZP_16495824.1| ribosome biogenesis GTP-binding protein YlqF [Listeria seeligeri
FSL N1-067]
gi|422421929|ref|ZP_16498882.1| ribosome biogenesis GTP-binding protein YlqF [Listeria seeligeri
FSL S4-171]
gi|313633473|gb|EFS00297.1| ribosome biogenesis GTP-binding protein YlqF [Listeria seeligeri
FSL N1-067]
gi|313638163|gb|EFS03419.1| ribosome biogenesis GTP-binding protein YlqF [Listeria seeligeri
FSL S4-171]
Length = 287
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 117/241 (48%), Gaps = 27/241 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ LVD+I E+ DARIP SS L RR+++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPML--EEIIHQKRRVIILNKADT 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ASS 140
A KEWI +F ++ P+ VN+ K K QA L +D
Sbjct: 63 ADEKTTKEWIDYFAEKGLPAVAVNAQEG---KGLFKIEQA-AEKLMAEKFDRLRSKGMKP 118
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ M+LGIPNVGKS L N L K A +PG TK +K+
Sbjct: 119 RAIRAMILGIPNVGKSTLINRL-----------AKKNIARTGNKPGVTKAQQWIKVGK-- 165
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKWA 258
+ +LDTPGIL P+ D E+ KLALTGAI D + +E+A Y L L + D + W
Sbjct: 166 TLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFLEKHYPDRLENWL 225
Query: 259 K 259
K
Sbjct: 226 K 226
>gi|422415767|ref|ZP_16492724.1| ribosome biogenesis GTP-binding protein YlqF [Listeria innocua FSL
J1-023]
gi|313623978|gb|EFR94077.1| ribosome biogenesis GTP-binding protein YlqF [Listeria innocua FSL
J1-023]
Length = 287
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 117/240 (48%), Gaps = 25/240 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ LVD+I E+ DARIP SS L RR+++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPML--EEIIHQKRRVIILNKADT 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL-----RKSDYDASSD 141
A KEWI +F ++ P+ VN+ K K QA + + R
Sbjct: 63 ADEKTTKEWIDYFAEKGLPAVAVNAQEG---KGLFKIEQAAEKLMAEKFERLRSKGMKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M+LGIPNVGKS L N L K A +PG TK +K+
Sbjct: 120 AIRAMILGIPNVGKSTLINRL-----------AKKNIARTGNKPGVTKAQQWIKVGK--T 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKWAK 259
+ +LDTPGIL P+ D E+ KLALTGAI D + +E+A Y L L + D + W K
Sbjct: 167 LELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFLEKHYPDRLQNWLK 226
>gi|315282092|ref|ZP_07870580.1| ribosome biogenesis GTP-binding protein YlqF [Listeria marthii FSL
S4-120]
gi|313614262|gb|EFR87918.1| ribosome biogenesis GTP-binding protein YlqF [Listeria marthii FSL
S4-120]
Length = 288
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 117/241 (48%), Gaps = 27/241 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ LVD+I E+ DARIP SS L RR+++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPML--EEIIHQKRRVIILNKADT 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ASS 140
A KEWI +F ++ P+ VN+ K K QA L +D
Sbjct: 63 ADEKTTKEWIDYFAEKGLPAVAVNAQEG---KGLFKIEQA-AEKLMAEKFDRLRSKGMKP 118
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ M+LGIPNVGKS L N L K A +PG TK +K+
Sbjct: 119 RAIRAMILGIPNVGKSTLINRL-----------AKKNIARTGNKPGVTKAQQWIKVGK-- 165
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKWA 258
+ +LDTPGIL P+ D E+ KLALTGAI D + +E+A Y L L + D + W
Sbjct: 166 TLELLDTPGILWPKFEDQEIGYKLALTGAIKDDILQMEEIAGYGLRFLENHYPDRLQNWL 225
Query: 259 K 259
K
Sbjct: 226 K 226
>gi|16800379|ref|NP_470647.1| ribosomal biogenesis GTPase [Listeria innocua Clip11262]
gi|422412731|ref|ZP_16489690.1| ribosome biogenesis GTP-binding protein YlqF [Listeria innocua FSL
S4-378]
gi|16413784|emb|CAC96542.1| lin1311 [Listeria innocua Clip11262]
gi|313619217|gb|EFR90980.1| ribosome biogenesis GTP-binding protein YlqF [Listeria innocua FSL
S4-378]
Length = 287
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 117/240 (48%), Gaps = 25/240 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ LVD+I E+ DARIP SS L RR+++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPML--EEIIHQKRRVIILNKADT 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL-----RKSDYDASSD 141
A KEWI +F ++ P+ VN+ K K QA + + R
Sbjct: 63 ADEKTTKEWIDYFAEKGLPAVAVNAQEG---KGLFKIEQAAEKLMAEKFERLRSKGMKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M+LGIPNVGKS L N L K A +PG TK +K+
Sbjct: 120 AIRAMILGIPNVGKSTLINRL-----------AKKNIARTGNKPGVTKAQQWIKVGK--T 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKWAK 259
+ +LDTPGIL P+ D E+ KLALTGAI D + +E+A Y L L + D + W K
Sbjct: 167 LELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFLEKHYPDRLQNWLK 226
>gi|116872705|ref|YP_849486.1| ribosomal biogenesis GTPase [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116741583|emb|CAK20707.1| GTPase family protein [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 287
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 117/241 (48%), Gaps = 27/241 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ LVD+I E+ DARIP SS L RR+++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPML--EEIIHQKRRVIILNKADT 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ASS 140
A KEWI +F + P+ VN+ K K QA L +D
Sbjct: 63 ADEKTTKEWIDYFADKGLPAVAVNAQEG---KGLFKIEQA-AEKLMAEKFDRLRSKGMKP 118
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ M+LGIPNVGKS L N L K A +PG TK +K+
Sbjct: 119 RAIRAMILGIPNVGKSTLINRL-----------AKKNIARTGNKPGVTKAQQWIKVGK-- 165
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKKWA 258
+ +LDTPGIL P+ D E+ KLALTGAI D + +++A Y L L N+ D + W
Sbjct: 166 TLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEDIAGYGLRFLEKNYPDRLENWL 225
Query: 259 K 259
K
Sbjct: 226 K 226
>gi|422409470|ref|ZP_16486431.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes FSL F2-208]
gi|313609087|gb|EFR84797.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes FSL F2-208]
Length = 287
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 123/259 (47%), Gaps = 27/259 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ LVD+I E+ DARIP SS L RR+++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPML--EEIIHQKRRVIILNKADT 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ASS 140
A KEWI +F ++ P+ VN+ K K QA L +D
Sbjct: 63 ADEKTTKEWIDYFAEKGLPAVAVNAQEG---KGLFKIEQA-AEKLMAEKFDRLRSKGMKP 118
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ M+LGIPNVGKS L N L K A +PG TK +K+
Sbjct: 119 RAIRAMILGIPNVGKSTLINRL-----------AKKNIARTGNKPGVTKAQQWIKVGK-- 165
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKWA 258
+ +LDTPGIL P+ D E+ KLALTGAI D + +++A Y L L + D + W
Sbjct: 166 TLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEDIAGYGLRFLENHYPDRLQNWL 225
Query: 259 KFSINQINKPLTLHHKADQ 277
K N TL A++
Sbjct: 226 KVETVSENPVETLAFIAEK 244
>gi|340355018|ref|ZP_08677712.1| ribosome biogenesis GTP-binding protein YlqF [Sporosarcina
newyorkensis 2681]
gi|339622815|gb|EGQ27328.1| ribosome biogenesis GTP-binding protein YlqF [Sporosarcina
newyorkensis 2681]
Length = 284
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 129/253 (50%), Gaps = 37/253 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R +++++ LVDI+ E+ DAR+P SS D++ P R+L+LNK
Sbjct: 5 WFPGHMAKARREVSEKLKLVDIVFELIDARLPLSSRNPMIDEVIQQKP-----RLLILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNV-------KEFL--KFLQAHVRNLRKS 134
MDLA Q K WI +F+++ + +NS + KE L KF + R +R
Sbjct: 60 MDLADEVQTKRWIAYFEERGFRTVAINSFEGKGLQTVTKAAKEILQPKFDRMKQRGIRPG 119
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ M++GIPNVGKS L N L K A +PG TK +
Sbjct: 120 -------AIRAMIVGIPNVGKSTLINRL-----------AKKNIAKTGNKPGVTKAQQWI 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
K + +LDTPG+L P+ D EV KLALTGAI DS + +ELA Y L L+
Sbjct: 162 KYGKE--LELLDTPGVLWPKFEDPEVGFKLALTGAIKDSVLNMEELAVYGLRFLSEHYPE 219
Query: 255 KKWAKFSINQINK 267
+ A++ + I++
Sbjct: 220 RLEARYQLTAIDE 232
>gi|217964585|ref|YP_002350263.1| ribosomal biogenesis GTPase [Listeria monocytogenes HCC23]
gi|290894531|ref|ZP_06557481.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J2-071]
gi|386008041|ref|YP_005926319.1| GTPase family protein [Listeria monocytogenes L99]
gi|386026640|ref|YP_005947416.1| putative ribosome biogenesis GTP-binding protein [Listeria
monocytogenes M7]
gi|404407706|ref|YP_006690421.1| GTPase family protein [Listeria monocytogenes SLCC2376]
gi|217333855|gb|ACK39649.1| GTPase family protein [Listeria monocytogenes HCC23]
gi|290555912|gb|EFD89476.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J2-071]
gi|307570851|emb|CAR84030.1| GTPase family protein [Listeria monocytogenes L99]
gi|336023221|gb|AEH92358.1| putative ribosome biogenesis GTP-binding protein [Listeria
monocytogenes M7]
gi|404241855|emb|CBY63255.1| GTPase family protein [Listeria monocytogenes SLCC2376]
Length = 287
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 117/241 (48%), Gaps = 27/241 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ LVD+I E+ DARIP SS L RR+++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPML--EEIIHQKRRVIILNKADT 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ASS 140
A KEWI +F ++ P+ VN+ K K QA L +D
Sbjct: 63 ADEKTTKEWIDYFAEKGLPAVAVNAQEG---KGLFKIEQA-AEKLMAEKFDRLRSKGMKP 118
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ M+LGIPNVGKS L N L K A +PG TK +K+
Sbjct: 119 RAIRAMILGIPNVGKSTLINRL-----------AKKNIARTGNKPGVTKAQQWIKVGK-- 165
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKWA 258
+ +LDTPGIL P+ D E+ KLALTGAI D + +++A Y L L + D + W
Sbjct: 166 TLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEDIAGYGLRFLENHYPDRLQNWL 225
Query: 259 K 259
K
Sbjct: 226 K 226
>gi|387927054|ref|ZP_10129733.1| GTPase YlqF [Bacillus methanolicus PB1]
gi|387589198|gb|EIJ81518.1| GTPase YlqF [Bacillus methanolicus PB1]
Length = 289
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 122/232 (52%), Gaps = 31/232 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ LVDII E+ DARIP+SS D++ H P R+L+LNK
Sbjct: 5 WFPGHMAKARREVTEKLKLVDIIFELVDARIPYSSRNPMIDEVIQHKP-----RLLLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
D+A ++ KEWI +F + + + +NS +KE + A + + K +D
Sbjct: 60 ADMADQSKTKEWIEYFQENDIRALAINSQAGTGMKEIV----ALSKEILKEKFDRMKAKG 115
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ M++GIPN GKS L N L R A+ G PG T+ +K+
Sbjct: 116 LKPRAIRAMIVGIPNAGKSTLINRL---ARKNIAKTGN--------TPGVTRAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ +LDTPGIL P+ D EV KLALTGAI D+ + +++A Y L L
Sbjct: 165 KE--LELLDTPGILWPKFEDQEVGLKLALTGAIKDTILNLQDVAVYALRFLE 214
>gi|325180121|emb|CCA14523.1| GTPase putative [Albugo laibachii Nc14]
Length = 306
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 129/239 (53%), Gaps = 30/239 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMAAA + + ++ VD+++EVRDARIPF+S D NH S R++V NK
Sbjct: 13 WFPGHMAAAKKQMQAQLDSVDVLIEVRDARIPFTSANPILDTAFNH----SKPRLVVFNK 68
Query: 84 MDLASPTQFKEWITFFDQ-----------QNCPSFGVNSHNKDNVKEFLKFLQAHVRNLR 132
DLA+ + T F Q + C V K V L++ + R
Sbjct: 69 CDLANSNMRRLVETQFMQDGERTIENSFPRACMFTSVLKGKK--VNSILQWCDENTR--- 123
Query: 133 KSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGET--KD 190
+ + ++ T+ VM+LGIPNVGKS+L N+ + KGK R A V P PG T KD
Sbjct: 124 -AQFKNTAGTM-VMVLGIPNVGKSSLINAFRSLSSSAKLAKGKKR-ALVGPTPGVTIRKD 180
Query: 191 IYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
I +++ + P IYV+DTPG++ P + + E KLALTGAI D VG + LA Y L +LN
Sbjct: 181 I--IQVNATPAIYVVDTPGVMLPNVENQETGLKLALTGAIRDDIVGKEVLADYMLFLLN 237
>gi|386053525|ref|YP_005971083.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes Finland 1998]
gi|346646176|gb|AEO38801.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes Finland 1998]
Length = 287
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 116/241 (48%), Gaps = 27/241 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ LVD+I E+ DARIP SS L RR+++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPML--EEIIHQKRRVIILNKADT 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ASS 140
A EWI +F ++ P+ VN+ K K QA L +D
Sbjct: 63 ADEKTTNEWIDYFAEKGLPAVAVNAQEG---KGLFKIEQA-AEKLMAEKFDRLRSKGMKP 118
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ M+LGIPNVGKS L N L K A +PG TK +K+
Sbjct: 119 RAIRAMILGIPNVGKSTLINRL-----------AKKNIARTGNKPGVTKAQQWIKVGK-- 165
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKWA 258
+ +LDTPGIL P+ D E+ KLALTGAI D + +E+A Y L L + D + W
Sbjct: 166 TLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFLENHYPDRLQTWL 225
Query: 259 K 259
K
Sbjct: 226 K 226
>gi|323489565|ref|ZP_08094792.1| hypothetical protein GPDM_09470 [Planococcus donghaensis MPA1U2]
gi|323396696|gb|EGA89515.1| hypothetical protein GPDM_09470 [Planococcus donghaensis MPA1U2]
Length = 288
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 132/255 (51%), Gaps = 35/255 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ LVDII E+ DAR+P SS DQ+ P R+++LNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLVDIIFELVDARLPLSSRNPMIDQVIQQKP-----RLIILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
MD+A + K+WI +F+ Q + +NS L+ + + + + +D
Sbjct: 60 MDMADEVETKKWIRYFEDQGTRAVAINSLEGRG----LQLVTKASKEILEEKWDRMIAKG 115
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ M++GIPNVGKS L N L + + A+ G + PG TK +K+
Sbjct: 116 IKPRAIRAMIVGIPNVGKSTLINRL---SKKSLAKTGNM--------PGVTKAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYK 255
I +LDTPGIL P+ D E KLA+TGAI DS + +ELA Y L L + D K
Sbjct: 165 KE--IELLDTPGILWPKFEDPETGLKLAVTGAIKDSVIQMQELAIYALKFLEERYPDRMK 222
Query: 256 KWAKFSINQINKPLT 270
+ ++ I+ I++ +
Sbjct: 223 E--RYGIDHIDEEIV 235
>gi|365157121|ref|ZP_09353402.1| ribosome biogenesis GTPase A [Bacillus smithii 7_3_47FAA]
gi|363625855|gb|EHL76866.1| ribosome biogenesis GTPase A [Bacillus smithii 7_3_47FAA]
Length = 284
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 116/229 (50%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+DI+ E+ DAR+P SS D++ P RI++LNK
Sbjct: 5 WFPGHMAKARREVTEKLKLIDIVFELVDARLPLSSRNPMIDEIIQQKP-----RIILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDAS 139
DLA KEWI +F + P+ +NS + + + + L+ +R
Sbjct: 60 ADLADSDWTKEWIAYFKSRQLPAIAINSQEGQGLSQIMNKTKELLKEKFERMRARGIKPR 119
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ V M++GIPNVGKS L N L K A PG TK +K+
Sbjct: 120 A--VRAMIVGIPNVGKSTLINRL-----------AKRNIAKTGNTPGVTKAQQWIKVEKE 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P+ D EV KLALTGAI DS + +++A Y L L
Sbjct: 167 --LELLDTPGILWPKFEDEEVGYKLALTGAIKDSIINLQDVAAYGLRFL 213
>gi|410456957|ref|ZP_11310804.1| GTPase YlqF [Bacillus bataviensis LMG 21833]
gi|409926931|gb|EKN64082.1| GTPase YlqF [Bacillus bataviensis LMG 21833]
Length = 290
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 120/229 (52%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ LVDII E+ DARIP+SS D++ H P R+++LNK
Sbjct: 5 WFPGHMAKARREVTEKLKLVDIIFELVDARIPYSSRNPMIDEIIQHKP-----RLVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLK----FLQAHVRNLRKSDYDAS 139
D+A P+ KEWI++F + + +NS + +K ++ L+ L+ +
Sbjct: 60 ADMADPSATKEWISYFADKGIKALAINSQAGEGMKNIVQASHEILKEKFDRLKAKGVNPR 119
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ + M++GIPN GKS L N L K A PG TK +K+
Sbjct: 120 A--IRAMIVGIPNAGKSTLINRL-----------AKKNIAKTGNTPGVTKAQQWIKVGKE 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P+ D EV KLA+TGAI D+ + ++L Y L L
Sbjct: 167 --MELLDTPGILWPKFEDQEVGMKLAITGAIKDTLLNLQDLTVYSLRFL 213
>gi|392957506|ref|ZP_10323029.1| GTPase YlqF [Bacillus macauensis ZFHKF-1]
gi|391876469|gb|EIT85066.1| GTPase YlqF [Bacillus macauensis ZFHKF-1]
Length = 283
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 134/266 (50%), Gaps = 33/266 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R I +++ L+D++ E+ DARIP +S D++ P R+L+LNK
Sbjct: 5 WFPGHMAKARREITEKLKLIDVVFELVDARIPLASRNPMIDEITAGKP-----RLLLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
D+A P K+W+ +F+ + P +N+ + + ++A + L K +D
Sbjct: 60 ADMADPEATKQWVHYFENKGLPVLVLNAKTGQGINK----IEAKAKELVKEKFDKMKAKG 115
Query: 138 -ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI 196
V ++LGIPNVGKS L N L GK A +PG TK +K+
Sbjct: 116 IVKPRAVRALILGIPNVGKSTLINRLA----------GK-NIAVTGDKPGVTKKQQWIKV 164
Query: 197 ASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKK 256
+ ++ +LDTPGIL P+ D E+ KLA+TGAI ++ + E+ Y LG L +
Sbjct: 165 GT--SLELLDTPGILWPKFEDQEIGLKLAVTGAIKETLLDFTEVVLYALGYLKVHYSERL 222
Query: 257 WAKFSINQI-NKPLTLHHKADQSSGS 281
++++ I +PL L + + G
Sbjct: 223 CERYNLADIPEEPLALFDEIGRKRGC 248
>gi|389815303|ref|ZP_10206649.1| hypothetical protein A1A1_01208 [Planococcus antarcticus DSM 14505]
gi|388466082|gb|EIM08391.1| hypothetical protein A1A1_01208 [Planococcus antarcticus DSM 14505]
Length = 289
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 129/253 (50%), Gaps = 31/253 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ LVDII E+ DAR+P SS DQ+ P R+++LNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLVDIIFELVDARLPLSSRNPMIDQVIQQKP-----RLIILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
MD+A + K+WI +F+ Q + +NS L+ + + + + +D
Sbjct: 60 MDMADEVETKKWIRYFEDQGSRAVAINSLEGRG----LQLVTKASKEILEDKWDRMIAKG 115
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ M++GIPNVGKS L N L + + A+ G + PG TK +K+
Sbjct: 116 IKPRAIRAMIVGIPNVGKSTLINRL---SKKSLAKTGNM--------PGVTKAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
I +LDTPGIL P+ D E KLA+TGAI DS + +ELA Y L L +
Sbjct: 165 KE--IELLDTPGILWPKFEDPETGLKLAVTGAIKDSVIQMQELAIYSLKFLEERYPERMM 222
Query: 258 AKFSINQINKPLT 270
++ I+ +++ +
Sbjct: 223 ERYGIDHVDEEIV 235
>gi|323339886|ref|ZP_08080155.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus ruminis
ATCC 25644]
gi|417974042|ref|ZP_12614866.1| GTP-binding protein [Lactobacillus ruminis ATCC 25644]
gi|323092759|gb|EFZ35362.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus ruminis
ATCC 25644]
gi|346329497|gb|EGX97792.1| GTP-binding protein [Lactobacillus ruminis ATCC 25644]
Length = 284
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 116/227 (51%), Gaps = 30/227 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA A R + + + VDI+LE+ DAR+P SS QL + + I+VL KMDL
Sbjct: 6 WYPGHMAKALRQVKENLNAVDIVLELVDARLPESSRNPQL--EELLQNKKSIIVLTKMDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHN------KDNVKEFL--KFLQAHVRNLRKSDYDA 138
A P +EWI +++Q P+ VNS+ + +KE L K R ++ S
Sbjct: 64 ADPKLTREWIAYYEQNGHPAIAVNSNQGTLPAIEKKIKEVLKEKIAAKEARGIKNS---- 119
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
+ M +GIPNVGKS L N L K A V +PG TK LK S
Sbjct: 120 ---RIKAMCIGIPNVGKSTLLNRLV-----------KKNVAIVGNKPGVTKAQQWLKAGS 165
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
++ +LDTPGIL P+ D V KLALTGA+ D+ ++A Y L
Sbjct: 166 --SLLLLDTPGILWPKFEDPIVGKKLALTGAVKDTLYAKDDVALYEL 210
>gi|347525434|ref|YP_004832182.1| GTPase [Lactobacillus ruminis ATCC 27782]
gi|345284393|gb|AEN78246.1| GTP-binding protein, GTPase [Lactobacillus ruminis ATCC 27782]
Length = 284
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 116/227 (51%), Gaps = 30/227 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA A R + + + VDI+LE+ DAR+P SS QL + + I+VL KMDL
Sbjct: 6 WYPGHMAKALRQVKENLNAVDIVLELVDARLPESSRNPQL--EELLQNKKSIIVLTKMDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHN------KDNVKEFL--KFLQAHVRNLRKSDYDA 138
A P +EWI +++Q P+ VNS+ + +KE L K R ++ S
Sbjct: 64 ADPKLTREWIAYYEQNGHPAIAVNSNQGTLPAIEKKIKEVLKEKIAAKEARGIKNS---- 119
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
+ M +GIPNVGKS L N L K A V +PG TK LK S
Sbjct: 120 ---RIKAMCIGIPNVGKSTLLNRLV-----------KKNVAIVGNKPGVTKAQQWLKAGS 165
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
++ +LDTPGIL P+ D V KLALTGA+ D+ ++A Y L
Sbjct: 166 --SLLLLDTPGILWPKFEDPIVGKKLALTGAVKDTLYAKDDVALYEL 210
>gi|406579906|ref|ZP_11055131.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD4E]
gi|406582129|ref|ZP_11057260.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD3E]
gi|406584370|ref|ZP_11059402.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD2E]
gi|406589226|ref|ZP_11063668.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD1E]
gi|410935906|ref|ZP_11367780.1| ribosome biogenesis GTP-binding protein [Enterococcus sp. GMD5E]
gi|404454845|gb|EKA01745.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD4E]
gi|404458533|gb|EKA04954.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD3E]
gi|404464179|gb|EKA09736.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD2E]
gi|404471195|gb|EKA15747.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD1E]
gi|410735705|gb|EKQ77612.1| ribosome biogenesis GTP-binding protein [Enterococcus sp. GMD5E]
Length = 307
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 133/278 (47%), Gaps = 46/278 (16%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R ++++M VDI+ E+ DAR+P SS DQ+ P R+++LNK
Sbjct: 26 WFPGHMAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQKP-----RLVLLNK 80
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD--YDASSD 141
DLA P Q K W +F +Q + + + +K + + ++ R D
Sbjct: 81 ADLADPQQTKLWQEYFRKQGHLALAITAQESKGIKGLVPAAKEALKEKRARDAARGIKPR 140
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M+LGIPNVGKS L N L +G+ + A +PG TK L++ +
Sbjct: 141 AIRAMVLGIPNVGKSTLMNRL--VGK---------KIAQTGNKPGVTKGQQWLRLGNE-- 187
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKEL--------AQYFLGILNFSDE 253
+ +LDTPGIL P+ D E+ KLALTGAI D V +L AQY+ G SD
Sbjct: 188 LELLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGLDFFAQYYSG--RISDR 245
Query: 254 YKKWAKFSINQINK--PLTLH-------HKADQSSGSE 282
Y SI Q K P L +K D GSE
Sbjct: 246 Y----GLSIEQEEKLAPELLMDITAKRGYKEDYDRGSE 279
>gi|379727377|ref|YP_005319562.1| 50S ribosomal subunit maturation GTPase RbgA [Melissococcus
plutonius DAT561]
gi|376318280|dbj|BAL62067.1| 50S ribosomal subunit maturation GTPase RbgA [Melissococcus
plutonius DAT561]
Length = 284
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 119/229 (51%), Gaps = 33/229 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +A+++ VDI+ E+ DAR+P SS DQ+ +R+++LNK
Sbjct: 5 WYPGHMAKAKREVAEKLKYVDIVFELIDARLPLSSRNPMLDQI-----IQQKKRLILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNV-------KEFLKFLQAHVRNLRKSDY 136
DLA P Q K+W+ +F + VN+ + KE LK QA R+ +
Sbjct: 60 SDLADPDQNKKWVNYFTNLGNTALLVNAKQDKGINKIVLAAKETLKEKQA-----REKEK 114
Query: 137 DASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI 196
+ M +GIPNVGKS L N L IG+ + A +PG TK L++
Sbjct: 115 GLKKRPIKAMCIGIPNVGKSTLMNRL--IGK---------KVAQTGNKPGVTKGQQWLRV 163
Query: 197 ASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ ++ +LDTPGIL P+ D EV KLALTGAI D + +LA Y L
Sbjct: 164 GN--DLELLDTPGILWPKFEDPEVGKKLALTGAIKDQLLYSDDLAIYGL 210
>gi|293568166|ref|ZP_06679502.1| GTP-binding protein [Enterococcus faecium E1071]
gi|314938031|ref|ZP_07845341.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133a04]
gi|314941983|ref|ZP_07848844.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133C]
gi|314948764|ref|ZP_07852136.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0082]
gi|314951782|ref|ZP_07854821.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133A]
gi|314991811|ref|ZP_07857269.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133B]
gi|314995852|ref|ZP_07860939.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133a01]
gi|389868316|ref|YP_006375739.1| ribosome biogenesis GTP-binding protein [Enterococcus faecium DO]
gi|424779675|ref|ZP_18206586.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
V689]
gi|424794597|ref|ZP_18220544.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
S447]
gi|424825722|ref|ZP_18250685.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R501]
gi|424855823|ref|ZP_18280121.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R499]
gi|424866148|ref|ZP_18289997.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R497]
gi|424938571|ref|ZP_18354355.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R496]
gi|424952498|ref|ZP_18367515.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R494]
gi|424956838|ref|ZP_18371598.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R446]
gi|424959384|ref|ZP_18373973.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1986]
gi|424963125|ref|ZP_18377390.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1190]
gi|424967388|ref|ZP_18381091.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1140]
gi|424969857|ref|ZP_18383405.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1139]
gi|424973476|ref|ZP_18386753.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1137]
gi|424976285|ref|ZP_18389388.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1123]
gi|424980599|ref|ZP_18393381.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV99]
gi|424983189|ref|ZP_18395789.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV69]
gi|424986601|ref|ZP_18399010.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV38]
gi|424989599|ref|ZP_18401859.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV26]
gi|424995261|ref|ZP_18407157.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV168]
gi|424997214|ref|ZP_18408979.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV165]
gi|425001557|ref|ZP_18413061.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV161]
gi|425003209|ref|ZP_18414588.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV102]
gi|425009197|ref|ZP_18420229.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV1]
gi|425010142|ref|ZP_18421112.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E422]
gi|425013313|ref|ZP_18424049.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E417]
gi|425017282|ref|ZP_18427795.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
C621]
gi|425019858|ref|ZP_18430195.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
C497]
gi|425022883|ref|ZP_18433036.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
C1904]
gi|425031327|ref|ZP_18436464.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
515]
gi|425036885|ref|ZP_18441600.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
514]
gi|425039240|ref|ZP_18443797.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
513]
gi|425043851|ref|ZP_18448053.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
511]
gi|425044394|ref|ZP_18448556.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
510]
gi|425049526|ref|ZP_18453373.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
509]
gi|425051442|ref|ZP_18455108.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
506]
gi|425060028|ref|ZP_18463338.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
503]
gi|447912908|ref|YP_007394320.1| 50S ribosomal subunit maturation GTPase RbgA ( YlqF) [Enterococcus
faecium NRRL B-2354]
gi|291589156|gb|EFF20968.1| GTP-binding protein [Enterococcus faecium E1071]
gi|313589956|gb|EFR68801.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133a01]
gi|313593622|gb|EFR72467.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133B]
gi|313596061|gb|EFR74906.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133A]
gi|313599235|gb|EFR78080.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133C]
gi|313642606|gb|EFS07186.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133a04]
gi|313644830|gb|EFS09410.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0082]
gi|388533565|gb|AFK58757.1| ribosome biogenesis GTP-binding protein [Enterococcus faecium DO]
gi|402925013|gb|EJX45189.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
V689]
gi|402925238|gb|EJX45399.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R501]
gi|402926391|gb|EJX46431.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
S447]
gi|402931138|gb|EJX50733.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R499]
gi|402936784|gb|EJX55935.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R496]
gi|402939052|gb|EJX58010.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R497]
gi|402941118|gb|EJX59871.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R494]
gi|402944938|gb|EJX63318.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R446]
gi|402950239|gb|EJX68248.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1190]
gi|402950675|gb|EJX68658.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1986]
gi|402954529|gb|EJX72140.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1140]
gi|402958434|gb|EJX75747.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1137]
gi|402963190|gb|EJX80076.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1139]
gi|402966045|gb|EJX82716.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV99]
gi|402970088|gb|EJX86454.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1123]
gi|402972187|gb|EJX88405.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV69]
gi|402976063|gb|EJX91984.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV38]
gi|402977896|gb|EJX93669.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV168]
gi|402981481|gb|EJX97007.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV26]
gi|402986120|gb|EJY01267.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV161]
gi|402986623|gb|EJY01738.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV165]
gi|402990422|gb|EJY05295.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV1]
gi|402992483|gb|EJY07184.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV102]
gi|403000950|gb|EJY15033.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E422]
gi|403001315|gb|EJY15376.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E417]
gi|403004617|gb|EJY18406.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
C621]
gi|403010679|gb|EJY24037.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
C497]
gi|403011633|gb|EJY24927.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
C1904]
gi|403013185|gb|EJY26312.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
514]
gi|403015972|gb|EJY28820.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
515]
gi|403016878|gb|EJY29667.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
513]
gi|403017894|gb|EJY30617.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
511]
gi|403027386|gb|EJY39279.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
509]
gi|403029919|gb|EJY41641.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
510]
gi|403037710|gb|EJY48974.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
506]
gi|403043020|gb|EJY53949.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
503]
gi|445188617|gb|AGE30259.1| 50S ribosomal subunit maturation GTPase RbgA ( YlqF) [Enterococcus
faecium NRRL B-2354]
Length = 307
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 116/224 (51%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R ++++M VDI+ E+ DAR+P SS DQ+ P R+++LNK
Sbjct: 26 WFPGHMAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQKP-----RLVLLNK 80
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD--YDASSD 141
DLA P Q K W +F +Q + + + +K + + ++ R D
Sbjct: 81 ADLADPQQTKLWQEYFRKQGHLALAITAQESKGIKGLVPAAKEALKEKRARDAARGIKPR 140
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M+LGIPNVGKS L N L +G+ + A +PG TK L++ +
Sbjct: 141 AIRAMVLGIPNVGKSTLMNRL--VGK---------KIAQTGNKPGVTKGQQWLRLGNE-- 187
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D E+ KLALTGAI D V +LA Y L
Sbjct: 188 LELLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGL 231
>gi|257884858|ref|ZP_05664511.1| GTP-binding protein [Enterococcus faecium 1,231,501]
gi|257820696|gb|EEV47844.1| GTP-binding protein [Enterococcus faecium 1,231,501]
Length = 286
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 116/224 (51%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R ++++M VDI+ E+ DAR+P SS DQ+ P R+++LNK
Sbjct: 5 WFPGHMAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQKP-----RLVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD--YDASSD 141
DLA P Q K W +F +Q + + + +K + + ++ R D
Sbjct: 60 ADLADPQQTKLWQEYFRKQGHLALAITAQESKGIKGLVAAAKEALKEKRARDAARGIKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M+LGIPNVGKS L N L +G+ + A +PG TK L++ +
Sbjct: 120 AIRAMVLGIPNVGKSTLMNRL--VGK---------KIAQTGNKPGVTKGQQWLRLGNE-- 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D E+ KLALTGAI D V +LA Y L
Sbjct: 167 LELLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGL 210
>gi|403234817|ref|ZP_10913403.1| GTPase YlqF [Bacillus sp. 10403023]
Length = 280
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 131/248 (52%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+DI+ E+ DARIP SS D++ + P R+L+LNK
Sbjct: 5 WFPGHMAKARRQVTEKLSLIDIVFELVDARIPASSRNPMIDEIIKNKP-----RLLLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSD-- 141
D A P KEWI+++ + + +NS + +K+ + +A V K D A+
Sbjct: 60 ADKADPKVTKEWISYYKESGVHALAINSQAGEGMKQIVN--EAKVILTDKFDKMAAKGIR 117
Query: 142 --TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ +++GIPNVGKS L N L K A +PG TK +K+
Sbjct: 118 PRAIRALIVGIPNVGKSTLINRL-----------AKKNIAQTGDRPGITKAQSWIKVGKE 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKKW 257
+ +LDTPGIL P+ D EV KLA TGAI D+ + +++A Y L L N+ D K+
Sbjct: 167 --LELLDTPGILWPKFEDQEVGLKLATTGAIKDTILNLQDIAVYALRFLEENYPDNLKE- 223
Query: 258 AKFSINQI 265
+F ++QI
Sbjct: 224 -RFDLDQI 230
>gi|69246756|ref|ZP_00604104.1| GTP-binding protein [Enterococcus faecium DO]
gi|425057006|ref|ZP_18460442.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
504]
gi|68195110|gb|EAN09570.1| GTP-binding protein [Enterococcus faecium DO]
gi|403041302|gb|EJY52327.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
504]
Length = 293
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 116/224 (51%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R ++++M VDI+ E+ DAR+P SS DQ+ P R+++LNK
Sbjct: 12 WFPGHMAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQKP-----RLVLLNK 66
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD--YDASSD 141
DLA P Q K W +F +Q + + + +K + + ++ R D
Sbjct: 67 ADLADPQQTKLWQEYFRKQGHLALAITAQESKGIKGLVPAAKEALKEKRARDAARGIKPR 126
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M+LGIPNVGKS L N L +G+ + A +PG TK L++ +
Sbjct: 127 AIRAMVLGIPNVGKSTLMNRL--VGK---------KIAQTGNKPGVTKGQQWLRLGNE-- 173
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D E+ KLALTGAI D V +LA Y L
Sbjct: 174 LELLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGL 217
>gi|430821967|ref|ZP_19440548.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0120]
gi|430864451|ref|ZP_19480373.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1574]
gi|431743482|ref|ZP_19532361.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2071]
gi|430443799|gb|ELA53761.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0120]
gi|430553998|gb|ELA93672.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1574]
gi|430606914|gb|ELB44251.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2071]
Length = 286
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 116/224 (51%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R ++++M VDI+ E+ DAR+P SS DQ+ P R+++LNK
Sbjct: 5 WFPGHMAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQKP-----RLVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD--YDASSD 141
DLA P Q K W +F +Q + + + +K + + ++ R D
Sbjct: 60 ADLADPQQTKLWQEYFRKQGHLALAITAQESKGIKGLVPAAKEALKEKRARDAARGIKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M+LGIPNVGKS L N L +G+ + A +PG TK L++ +
Sbjct: 120 AIRAMVLGIPNVGKSTLMNRL--VGK---------KIAQTGNKPGVTKGQQWLRLGNE-- 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D E+ KLALTGAI D V +LA Y L
Sbjct: 167 LELLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAVYGL 210
>gi|430825090|ref|ZP_19443300.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0164]
gi|430446482|gb|ELA56154.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0164]
Length = 286
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 116/224 (51%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R ++++M VDI+ E+ DAR+P SS DQ+ P R+++LNK
Sbjct: 5 WFPGHMAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQKP-----RLVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD--YDASSD 141
DLA P Q K W +F +Q + + + +K + + ++ R D
Sbjct: 60 ADLADPQQTKLWQEYFRKQGHLALAITAQESKGIKGLVPATKEALKEKRARDAARGIKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M+LGIPNVGKS L N L +G+ + A +PG TK L++ +
Sbjct: 120 AIRAMVLGIPNVGKSTLMNRL--VGK---------KIAQTGNKPGVTKGQQWLRLGNE-- 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D E+ KLALTGAI D V +LA Y L
Sbjct: 167 LELLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGL 210
>gi|430870490|ref|ZP_19483258.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1575]
gi|430558901|gb|ELA98293.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1575]
Length = 286
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 116/224 (51%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R ++++M VDI+ E+ DAR+P SS DQ+ P R+++LNK
Sbjct: 5 WFPGHMAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQKP-----RLVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD--YDASSD 141
DLA P Q K W +F +Q + + + +K + + ++ R D
Sbjct: 60 ADLADPQQTKLWQEYFRKQGHLALAITAQESKGIKGLVPAAKEALKEKRARDAARGIKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M+LGIPNVGKS L N L +G+ + A +PG TK L++ +
Sbjct: 120 AIRAMVLGIPNVGKSTLMNRL--VGK---------KIAQTGNKPGVTKGQQWLRLGNE-- 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D E+ KLALTGAI D V +LA Y L
Sbjct: 167 LELLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGL 210
>gi|257887693|ref|ZP_05667346.1| GTP-binding protein [Enterococcus faecium 1,141,733]
gi|257896187|ref|ZP_05675840.1| GTP-binding protein [Enterococcus faecium Com12]
gi|430852787|ref|ZP_19470518.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1258]
gi|431070188|ref|ZP_19494196.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1604]
gi|431582091|ref|ZP_19520040.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1861]
gi|257823747|gb|EEV50679.1| GTP-binding protein [Enterococcus faecium 1,141,733]
gi|257832752|gb|EEV59173.1| GTP-binding protein [Enterococcus faecium Com12]
gi|430541621|gb|ELA81766.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1258]
gi|430567698|gb|ELB06773.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1604]
gi|430593981|gb|ELB31951.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1861]
Length = 286
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 116/224 (51%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R ++++M VDI+ E+ DAR+P SS DQ+ P R+++LNK
Sbjct: 5 WFPGHMAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQKP-----RLVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD--YDASSD 141
DLA P Q K W +F +Q + + + +K + + ++ R D
Sbjct: 60 ADLADPQQTKLWQEYFRKQGHLALAITAQESKGIKGLVPAAKEALKEKRARDAARGIKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M+LGIPNVGKS L N L +G+ + A +PG TK L++ +
Sbjct: 120 AIRAMVLGIPNVGKSTLMNRL--VGK---------KIAQTGNKPGVTKGQQWLRLGNE-- 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D E+ KLALTGAI D V +LA Y L
Sbjct: 167 LELLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGL 210
>gi|340381926|ref|XP_003389472.1| PREDICTED: mitochondrial GTPase 1-like [Amphimedon queenslandica]
Length = 294
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 130/246 (52%), Gaps = 13/246 (5%)
Query: 18 AVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRR 77
A++ G W+ HMA + ++ +++EV DARIP + ++L+ FS ++
Sbjct: 3 ALAMLSGYNWFPGHMARGMKDALRKVQKCHLVIEVHDARIPLTGRNEKLK----FSKHKK 58
Query: 78 ILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD 137
ILVLNK DL P K + + + P N ++ + + LQ + L K D
Sbjct: 59 ILVLNKYDLTDPKGMKLYNE--NDDSVPVILTNCRGRNQISGNITALQKAIIKLTKDD-- 114
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKI 196
+ V VM++G+PNVGKS+L N+L ++ + G + A +S +PG TK + + +KI
Sbjct: 115 DIKNGVKVMIVGMPNVGKSSLINALRRL----SPGIGSPKAAPISSRPGYTKTVSTFIKI 170
Query: 197 ASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKK 256
++ P I +LDTPGI+ P I D E+ KLA G + FVG +A Y L LN Y+
Sbjct: 171 STDPLIKLLDTPGIMIPNIKDEEMALKLAAVGTLDHRFVGEVNIAAYILKTLNEQKLYQY 230
Query: 257 WAKFSI 262
K+++
Sbjct: 231 IKKYNL 236
>gi|257898824|ref|ZP_05678477.1| GTP-binding protein [Enterococcus faecium Com15]
gi|257836736|gb|EEV61810.1| GTP-binding protein [Enterococcus faecium Com15]
Length = 286
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 116/224 (51%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R ++++M VDI+ E+ DAR+P SS DQ+ P R+++LNK
Sbjct: 5 WFPGHMAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQKP-----RLVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD--YDASSD 141
DLA P Q K W +F +Q + + + +K + + ++ R D
Sbjct: 60 ADLADPQQTKLWQEYFRKQGHLALAITAQESKGIKGLVPAAKEALKEKRARDAARGIKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M+LGIPNVGKS L N L +G+ + A +PG TK L++ +
Sbjct: 120 AIRAMVLGIPNVGKSTLMNRL--VGK---------KIAQTGNKPGVTKGQQWLRLGNE-- 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D E+ KLALTGAI D V +LA Y L
Sbjct: 167 LELLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGL 210
>gi|257878019|ref|ZP_05657672.1| GTP-binding protein [Enterococcus faecium 1,230,933]
gi|257881195|ref|ZP_05660848.1| GTP-binding protein [Enterococcus faecium 1,231,502]
gi|257889782|ref|ZP_05669435.1| GTP-binding protein [Enterococcus faecium 1,231,410]
gi|257892281|ref|ZP_05671934.1| GTP-binding protein [Enterococcus faecium 1,231,408]
gi|260559069|ref|ZP_05831255.1| GTP-binding protein [Enterococcus faecium C68]
gi|261207603|ref|ZP_05922288.1| GTP-binding protein [Enterococcus faecium TC 6]
gi|289565115|ref|ZP_06445568.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
D344SRF]
gi|293556763|ref|ZP_06675326.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1039]
gi|293563421|ref|ZP_06677870.1| GTP-binding protein [Enterococcus faecium E1162]
gi|294614823|ref|ZP_06694718.1| GTP-binding protein [Enterococcus faecium E1636]
gi|294617502|ref|ZP_06697133.1| GTP-binding protein [Enterococcus faecium E1679]
gi|294622302|ref|ZP_06701345.1| GTP-binding protein [Enterococcus faecium U0317]
gi|383328502|ref|YP_005354386.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
Aus0004]
gi|415896304|ref|ZP_11550792.1| GTP-binding protein [Enterococcus faecium E4453]
gi|427395155|ref|ZP_18888077.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus durans
FB129-CNAB-4]
gi|430820383|ref|ZP_19439016.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0045]
gi|430828355|ref|ZP_19446477.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0269]
gi|430830304|ref|ZP_19448362.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0333]
gi|430833511|ref|ZP_19451523.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0679]
gi|430836213|ref|ZP_19454197.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0680]
gi|430838884|ref|ZP_19456827.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0688]
gi|430844507|ref|ZP_19462405.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1050]
gi|430846488|ref|ZP_19464347.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1133]
gi|430850088|ref|ZP_19467854.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1185]
gi|430854405|ref|ZP_19472118.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1392]
gi|430858559|ref|ZP_19476186.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1552]
gi|430861967|ref|ZP_19479319.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1573]
gi|430958963|ref|ZP_19486827.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1576]
gi|431010066|ref|ZP_19489591.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1578]
gi|431194415|ref|ZP_19500268.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1620]
gi|431228379|ref|ZP_19501520.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1622]
gi|431259159|ref|ZP_19505336.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1623]
gi|431295455|ref|ZP_19507343.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1626]
gi|431368594|ref|ZP_19509408.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1627]
gi|431434730|ref|ZP_19513049.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1630]
gi|431503033|ref|ZP_19515269.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1634]
gi|431539213|ref|ZP_19517717.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1731]
gi|431626776|ref|ZP_19523015.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1904]
gi|431745763|ref|ZP_19534602.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2134]
gi|431748729|ref|ZP_19537484.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2297]
gi|431754408|ref|ZP_19543069.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2883]
gi|431758890|ref|ZP_19547510.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E3346]
gi|431766316|ref|ZP_19554807.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E4215]
gi|431766776|ref|ZP_19555237.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1321]
gi|431770395|ref|ZP_19558795.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1644]
gi|431772916|ref|ZP_19561252.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2369]
gi|431776217|ref|ZP_19564484.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2560]
gi|431778326|ref|ZP_19566537.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E4389]
gi|431782317|ref|ZP_19570453.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E6012]
gi|431785297|ref|ZP_19573323.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E6045]
gi|257812247|gb|EEV41005.1| GTP-binding protein [Enterococcus faecium 1,230,933]
gi|257816853|gb|EEV44181.1| GTP-binding protein [Enterococcus faecium 1,231,502]
gi|257826142|gb|EEV52768.1| GTP-binding protein [Enterococcus faecium 1,231,410]
gi|257828660|gb|EEV55267.1| GTP-binding protein [Enterococcus faecium 1,231,408]
gi|260074826|gb|EEW63142.1| GTP-binding protein [Enterococcus faecium C68]
gi|260077986|gb|EEW65692.1| GTP-binding protein [Enterococcus faecium TC 6]
gi|289163122|gb|EFD10969.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
D344SRF]
gi|291592285|gb|EFF23899.1| GTP-binding protein [Enterococcus faecium E1636]
gi|291596242|gb|EFF27504.1| GTP-binding protein [Enterococcus faecium E1679]
gi|291598194|gb|EFF29292.1| GTP-binding protein [Enterococcus faecium U0317]
gi|291601095|gb|EFF31384.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1039]
gi|291604682|gb|EFF34167.1| GTP-binding protein [Enterococcus faecium E1162]
gi|364091113|gb|EHM33616.1| GTP-binding protein [Enterococcus faecium E4453]
gi|378938196|gb|AFC63268.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
Aus0004]
gi|425724291|gb|EKU87175.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus durans
FB129-CNAB-4]
gi|430439619|gb|ELA49952.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0045]
gi|430482906|gb|ELA60005.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0333]
gi|430483650|gb|ELA60718.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0269]
gi|430486252|gb|ELA63111.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0679]
gi|430488787|gb|ELA65441.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0680]
gi|430491285|gb|ELA67758.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0688]
gi|430497097|gb|ELA73156.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1050]
gi|430536120|gb|ELA76497.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1185]
gi|430538935|gb|ELA79204.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1133]
gi|430545186|gb|ELA85172.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1552]
gi|430548064|gb|ELA87969.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1392]
gi|430549258|gb|ELA89090.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1573]
gi|430556648|gb|ELA96145.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1576]
gi|430560561|gb|ELA99857.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1578]
gi|430572084|gb|ELB10954.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1620]
gi|430574681|gb|ELB13444.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1622]
gi|430577254|gb|ELB15859.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1623]
gi|430581545|gb|ELB19990.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1626]
gi|430584182|gb|ELB22532.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1627]
gi|430587374|gb|ELB25605.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1630]
gi|430587656|gb|ELB25877.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1634]
gi|430594476|gb|ELB32445.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1731]
gi|430603030|gb|ELB40573.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1904]
gi|430609969|gb|ELB47141.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2134]
gi|430613055|gb|ELB50078.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2297]
gi|430619002|gb|ELB55830.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2883]
gi|430626853|gb|ELB63403.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E3346]
gi|430626899|gb|ELB63443.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E4215]
gi|430632011|gb|ELB68302.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1321]
gi|430635322|gb|ELB71418.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1644]
gi|430637432|gb|ELB73448.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2369]
gi|430641551|gb|ELB77352.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2560]
gi|430643872|gb|ELB79575.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E4389]
gi|430647784|gb|ELB83223.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E6045]
gi|430647954|gb|ELB83389.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E6012]
Length = 286
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 116/224 (51%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R ++++M VDI+ E+ DAR+P SS DQ+ P R+++LNK
Sbjct: 5 WFPGHMAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQKP-----RLVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD--YDASSD 141
DLA P Q K W +F +Q + + + +K + + ++ R D
Sbjct: 60 ADLADPQQTKLWQEYFRKQGHLALAITAQESKGIKGLVPAAKEALKEKRARDAARGIKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M+LGIPNVGKS L N L +G+ + A +PG TK L++ +
Sbjct: 120 AIRAMVLGIPNVGKSTLMNRL--VGK---------KIAQTGNKPGVTKGQQWLRLGNE-- 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D E+ KLALTGAI D V +LA Y L
Sbjct: 167 LELLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGL 210
>gi|227551190|ref|ZP_03981239.1| GTP-binding protein [Enterococcus faecium TX1330]
gi|293377188|ref|ZP_06623396.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
PC4.1]
gi|293570273|ref|ZP_06681342.1| GTP-binding protein [Enterococcus faecium E980]
gi|424765200|ref|ZP_18192603.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX1337RF]
gi|425054012|ref|ZP_18457527.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
505]
gi|430840980|ref|ZP_19458901.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1007]
gi|431034777|ref|ZP_19491654.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1590]
gi|431102201|ref|ZP_19496812.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1613]
gi|431738013|ref|ZP_19526963.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1972]
gi|431740438|ref|ZP_19529353.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2039]
gi|431751528|ref|ZP_19540216.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2620]
gi|431756373|ref|ZP_19545005.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E3083]
gi|431761625|ref|ZP_19550187.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E3548]
gi|227179658|gb|EEI60630.1| GTP-binding protein [Enterococcus faecium TX1330]
gi|291609680|gb|EFF38941.1| GTP-binding protein [Enterococcus faecium E980]
gi|292644208|gb|EFF62310.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
PC4.1]
gi|402417222|gb|EJV49526.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX1337RF]
gi|403036936|gb|EJY48269.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
505]
gi|430494711|gb|ELA70946.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1007]
gi|430563492|gb|ELB02701.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1590]
gi|430570429|gb|ELB09390.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1613]
gi|430598049|gb|ELB35809.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1972]
gi|430603302|gb|ELB40832.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2039]
gi|430615309|gb|ELB52267.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2620]
gi|430620227|gb|ELB57029.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E3083]
gi|430624317|gb|ELB60967.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E3548]
Length = 293
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 116/224 (51%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R ++++M VDI+ E+ DAR+P SS DQ+ P R+++LNK
Sbjct: 12 WFPGHMAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQKP-----RLVLLNK 66
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD--YDASSD 141
DLA P Q K W +F +Q + + + +K + + ++ R D
Sbjct: 67 ADLADPQQTKLWQEYFRKQGHLALAITAQESKGIKGLVPAAKEALKEKRARDAARGIKPR 126
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M+LGIPNVGKS L N L +G+ + A +PG TK L++ +
Sbjct: 127 AIRAMVLGIPNVGKSTLMNRL--VGK---------KIAQTGNKPGVTKGQQWLRLGNE-- 173
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D E+ KLALTGAI D V +LA Y L
Sbjct: 174 LELLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGL 217
>gi|340377255|ref|XP_003387145.1| PREDICTED: mitochondrial GTPase 1-like [Amphimedon queenslandica]
Length = 294
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 128/240 (53%), Gaps = 13/240 (5%)
Query: 24 GGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNK 83
G W+ HMA + ++ +++EV DARIP + ++L+ FS ++ILVLNK
Sbjct: 9 GYNWFPGHMARGMKDALRKVQKCHLVIEVHDARIPLTGRNEKLK----FSKHKKILVLNK 64
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTV 143
DL P K + + + P N ++ + + LQ + L K D + V
Sbjct: 65 YDLTDPKGMKLYNE--NDDSVPVILTNCRGRNQISGNITALQKAIIKLTKDD--DIKNGV 120
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNI 202
VM++G+PNVGKS+L N+L ++ + G + A +S +PG TK + + +KI++ P I
Sbjct: 121 KVMIVGMPNVGKSSLINALRRL----SPGIGSPKAAPISSRPGYTKTVSTFIKISTDPLI 176
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262
+LDTPGI+ P I D E+ KLA G + FVG +A Y L +LN Y+ K+++
Sbjct: 177 KLLDTPGIMIPNIKDEEMALKLAAVGTLDHRFVGEVNIAAYILKMLNEQKLYQYVKKYNL 236
>gi|340386672|ref|XP_003391832.1| PREDICTED: mitochondrial GTPase 1-like, partial [Amphimedon
queenslandica]
Length = 271
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 128/240 (53%), Gaps = 13/240 (5%)
Query: 24 GGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNK 83
G W+ HMA + ++ +++EV DARIP + ++L+ FS ++ILVLNK
Sbjct: 9 GYNWFPGHMARGMKDALRKVQKCHLVIEVHDARIPLTGRNEKLK----FSKHKKILVLNK 64
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTV 143
DL P K + + + P N ++ + + LQ + L K D + V
Sbjct: 65 YDLTDPKGMKLYNE--NDDSVPVILTNCRGRNQISGNITALQKAIIKLTKDD--DIKNGV 120
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNI 202
VM++G+PNVGKS+L N+L ++ + G + A +S +PG TK + + +KI++ P I
Sbjct: 121 KVMIVGMPNVGKSSLINALRRL----SPGIGSPKAAPISSRPGYTKTVSTFIKISTDPLI 176
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262
+LDTPGI+ P I D E+ KLA G + FVG +A Y L +LN Y+ K+++
Sbjct: 177 KLLDTPGIMIPNIKDEEMALKLAAVGTLDHRFVGEVNIAAYILKMLNEQKLYQYVKKYNL 236
>gi|416134962|ref|ZP_11598423.1| GTP-binding protein [Enterococcus faecium E4452]
gi|364092392|gb|EHM34773.1| GTP-binding protein [Enterococcus faecium E4452]
Length = 286
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 116/224 (51%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R ++++M VDI+ E+ DAR+P SS DQ+ P R+++LNK
Sbjct: 5 WFPGHMAKARREVSEKMKYVDIVFELVDARLPLSSHNPMLDQIIQQKP-----RLVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD--YDASSD 141
DLA P Q K W +F +Q + + + +K + + ++ R D
Sbjct: 60 ADLADPQQTKLWQEYFRKQGHLALAITAQESKGIKGLVPAAKEALKEKRARDAARGIKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M+LGIPNVGKS L N L +G+ + A +PG TK L++ +
Sbjct: 120 AIRAMVLGIPNVGKSTLMNRL--VGK---------KIAQTGNKPGVTKGQQWLRLGNE-- 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D E+ KLALTGAI D V +LA Y L
Sbjct: 167 LELLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGL 210
>gi|169827105|ref|YP_001697263.1| hypothetical protein Bsph_1533 [Lysinibacillus sphaericus C3-41]
gi|168991593|gb|ACA39133.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
Length = 290
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 117/228 (51%), Gaps = 23/228 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ LVDII E+ DAR+P SS D++ N P R+LVLNK
Sbjct: 5 WFPGHMAKARREVTEKLKLVDIIFELIDARLPLSSRNPMIDEVINQKP-----RLLVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
D+A + ++W+ +F Q+ + +NS +++ K Q ++ R
Sbjct: 60 ADMADEQETRKWVEYFAQRGHKAVAINSLEGKGLQQVTKAAQEILKEKFDRMKAKGMKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS L N L K A PG TK +K+
Sbjct: 120 AIRAMIVGIPNVGKSTLINRL-----------AKKNIAKTGNTPGVTKAQQWIKVGKE-- 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ +LDTPGIL P+ D EV KLALTGAI D+ ++LA Y L L+
Sbjct: 167 LELLDTPGILWPKFEDQEVGFKLALTGAIKDTITNMEDLAVYGLRFLS 214
>gi|332686611|ref|YP_004456385.1| 50S ribosomal subunit maturation GTPase RbgA [Melissococcus
plutonius ATCC 35311]
gi|332370620|dbj|BAK21576.1| 50S ribosomal subunit maturation GTPase RbgA [Melissococcus
plutonius ATCC 35311]
Length = 284
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 118/229 (51%), Gaps = 33/229 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R + +++ VDI+ E+ DAR+P SS DQ+ +R+++LNK
Sbjct: 5 WYPGHMAKAKREVTEKLKYVDIVFELIDARLPLSSRNPMLDQI-----IQQKKRLILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNV-------KEFLKFLQAHVRNLRKSDY 136
DLA P Q K+W+ +F + VN+ + KE LK QA R+ +
Sbjct: 60 SDLADPDQNKKWVNYFTNLGNTALLVNAKQDKGINKIVLAAKETLKEKQA-----REKEK 114
Query: 137 DASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI 196
+ M +GIPNVGKS L N L IG+ + A +PG TK L++
Sbjct: 115 GLKKRPIKAMCIGIPNVGKSTLMNRL--IGK---------KVAQTGNKPGVTKGQQWLRV 163
Query: 197 ASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ ++ +LDTPGIL P+ D EV KLALTGAI D + +LA Y L
Sbjct: 164 GN--DLELLDTPGILWPKFEDPEVGKKLALTGAIKDQLLYSDDLAIYGL 210
>gi|315222957|ref|ZP_07864836.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
anginosus F0211]
gi|315187907|gb|EFU21643.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
anginosus F0211]
Length = 283
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 125/242 (51%), Gaps = 19/242 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGEKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A PT KEW +F++Q + +NS + VK+ + Q+ ++ R+ + +T+
Sbjct: 64 ADPTLTKEWRNYFEKQGVKALPINSKEQSTVKKVTEAAQSLMKEKIARQKERGIQIETLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPN GKS L N L GK + A +PG TK LK S+ ++ +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA----------GK-KIAVTGNKPGVTKGQQWLK--SNKDLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
LDTPGIL P+ D +V KLALTGAI D + E+ GI F + Y K + Q
Sbjct: 171 LDTPGILWPKFEDEKVALKLALTGAIKDDLLPMDEVT--IFGINYFKEHYPKELQERFKQ 228
Query: 265 IN 266
+N
Sbjct: 229 MN 230
>gi|315640708|ref|ZP_07895810.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus italicus
DSM 15952]
gi|315483463|gb|EFU73957.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus italicus
DSM 15952]
Length = 298
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 118/224 (52%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ VD++ E+ DAR+P SS DQ+ H P R+++LNK
Sbjct: 13 WFPGHMAKARREVGEKIKFVDLVFELVDARLPLSSRNPMLDQIVQHKP-----RVVLLNK 67
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD--ASSD 141
DLA +Q ++W +F+ + N+ + K L + ++ R D + +
Sbjct: 68 ADLADESQTRKWQAYFESLGYETLACNAKETNTTKAVLAKAKRTLKEKRARDLERGIQAR 127
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M+LGIPNVGKS + N L +G+ + A +PG TK L++ +
Sbjct: 128 AIRAMVLGIPNVGKSTIMNRL--VGK---------KIAQTGNKPGVTKGQQWLRVGNE-- 174
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D E+ KLALTGAI D + ++A Y L
Sbjct: 175 LELLDTPGILWPKFEDQEIGKKLALTGAIKDQLLHLDDIALYGL 218
>gi|319649583|ref|ZP_08003739.1| GTPase [Bacillus sp. 2_A_57_CT2]
gi|317398745|gb|EFV79427.1| GTPase [Bacillus sp. 2_A_57_CT2]
Length = 290
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 123/244 (50%), Gaps = 23/244 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ LVDII E+ DARIP+SS D++ H P R+++LNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLVDIIFELVDARIPYSSRNPMIDEIIQHKP-----RLVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
D+A K+WI F+ + + +NS +KE + Q+ ++ R
Sbjct: 60 ADMADKEATKKWIKHFEDKGIRALAINSQAGQGMKEIVSASQSILQEKFDRMKAKGVKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPN GKS L N L K A PG TK +K+
Sbjct: 120 AIRAMIVGIPNAGKSTLINRL-----------AKKNIARTGNTPGVTKAQQWIKVGKE-- 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
+ +LDTPGIL P+ D EV KLALTGAI D+ + +++A Y L L + ++
Sbjct: 167 LELLDTPGILWPKFEDQEVGLKLALTGAIKDTILNLQDVAVYALRFLGLRYPDRLHERYQ 226
Query: 262 INQI 265
+++I
Sbjct: 227 LDEI 230
>gi|333394924|ref|ZP_08476743.1| putative GTP-binding protein [Lactobacillus coryniformis subsp.
coryniformis KCTC 3167]
Length = 285
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 116/227 (51%), Gaps = 27/227 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A + + +++ LVDI+LE+ DAR+P +S DQ+ P R+++LNK
Sbjct: 6 WYPGHMAKAKKQVQEKLHLVDIVLEIVDARLPLASRNPILDQIIQQKP-----RLMILNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV----RNLRKSDYDAS 139
DLA P WI +F Q + P+ ++S + NV++ K QA V + R+
Sbjct: 61 ADLADPALNAAWINYFKQHDLPAISIDSQHNHNVQQIEK--QAQVILADKIARQQARGIK 118
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ + + +GIPNVGKS + N L K A PG TK LK
Sbjct: 119 NKPIRAICIGIPNVGKSTILNRL-----------VKRNVAITGNHPGVTKKQQWLKAGK- 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLG 246
++ +LDTPGIL P+ D V KLALTGAI DS ++A Y L
Sbjct: 167 -SLELLDTPGILWPKFEDPLVGKKLALTGAIKDSLYHADDVALYALA 212
>gi|352517745|ref|YP_004887062.1| putative GTP-binding protein [Tetragenococcus halophilus NBRC
12172]
gi|348601852|dbj|BAK94898.1| putative GTP-binding protein [Tetragenococcus halophilus NBRC
12172]
Length = 282
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 118/224 (52%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R +++++ VDI+ E+ D R+P SS D++ P R++++NK
Sbjct: 5 WFPGHMAKAKRQVSEKIKHVDIVFELVDGRLPISSRNPMLDEILQQKP-----RLVLINK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL-KFLQAHVRNL-RKSDYDASSD 141
DLA P Q K+W T+F++Q + +NS + K L K +A L R+ +
Sbjct: 60 ADLADPAQTKKWETYFNEQGYAALAINSQDNKGSKSILPKTKEALAEKLQREQEKGLKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS L N L GK + A +PG TK ++ +
Sbjct: 120 AIRAMVIGIPNVGKSTLLNRLA----------GK-KMAQTGNKPGVTKGQQWIRYKK--D 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D E+ KLALTGAI D ++A Y L
Sbjct: 167 LELLDTPGILWPKFEDQEIGKKLALTGAIKDQLFHQDDIAIYAL 210
>gi|395243567|ref|ZP_10420552.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus hominis
CRBIP 24.179]
gi|394484187|emb|CCI81560.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus hominis
CRBIP 24.179]
Length = 279
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 125/247 (50%), Gaps = 25/247 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + D + L+D+++EV DAR+P SS QL P I++LNK
Sbjct: 6 WYPGHMNKAKNQLEDNLDLIDVLIEVLDARLPVSSRNPMIGQLTKKKP-----HIVILNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKF--LQAHVRNLRKSDYDASSD 141
DLA P Q K W +F ++ +++ + N+ K L A + + AS+
Sbjct: 61 SDLADPIQTKLWTKYFQKEGSFVMSMDAQHNTNMTALFKLIKLAAKEKTEKLEQKGASNP 120
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ V L GIPN GKS + N L +GR A V +PG TK LK + N
Sbjct: 121 VIRVALAGIPNCGKSTIINRL--VGR---------NAAIVGDKPGVTKGQSWLK--TKTN 167
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKKWAK 259
+ +LDTPGIL P+ D V KLA GAI + ++A + + L N++ + +K+A+
Sbjct: 168 VQILDTPGILWPKFSDQTVGYKLAACGAIKEDIFHADDVALFAINFLKENYTKDLEKFAR 227
Query: 260 FSINQIN 266
+I+QIN
Sbjct: 228 LNIDQIN 234
>gi|326923267|ref|XP_003207860.1| PREDICTED: mitochondrial GTPase 1-like [Meleagris gallopavo]
Length = 343
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 118/218 (54%), Gaps = 11/218 (5%)
Query: 47 DIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPS 106
D ++EV DARIP S L+ +LVLNKMDLA P Q + QQ C
Sbjct: 73 DCLVEVHDARIPLSGRNPVLQE--VLGIRPHLLVLNKMDLADPRQQSRVLEQLRQQGCSH 130
Query: 107 FGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQI 165
+D NVK+ + + V + + + A S ++M++G+PNVGKS+L NSL ++
Sbjct: 131 VVFTDCQQDSNVKKIVPLVAKLVSSSPRY-HRAESTEYSIMVIGVPNVGKSSLINSLRRL 189
Query: 166 GRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYVLDTPGILPPEIHDVEVCSKL 224
+KGK V +PG TK + + +++ P +Y++DTPG+LPP++ DVE KL
Sbjct: 190 ----HLKKGK--ATAVGGEPGVTKAVLTRIQVCETPLVYLVDTPGVLPPKLADVETGMKL 243
Query: 225 ALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262
AL GAI D VG +A Y L +LN ++ ++ +
Sbjct: 244 ALCGAIRDHLVGEDIMADYLLYVLNQQQQFGYVERYGL 281
>gi|348686384|gb|EGZ26199.1| hypothetical protein PHYSODRAFT_297549 [Phytophthora sojae]
Length = 319
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 127/232 (54%), Gaps = 17/232 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMD 85
W+ HMA A RA+ +M VD+++EVRDARIP+SS L F S+ R++V NK D
Sbjct: 16 WFPGHMALARRAMVSQMDAVDVLIEVRDARIPWSSANPVL--EEAFGKSKPRLVVFNKSD 73
Query: 86 LASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRK---SDYDASSDT 142
LA+ + +QQ G + K LQA ++ K + + +++ +
Sbjct: 74 LANSNMQQR----VEQQCKQQLGTATDCLFTSVTKGKRLQAILQWCNKHSGAQFKSTAGS 129
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGET--KDIYSLK---IA 197
+ VM++GIPNVGKS+L N ++ KG+ R ATV P PG T DI ++ +
Sbjct: 130 M-VMVVGIPNVGKSSLINEFRRLSNNQKMAKGRKR-ATVGPTPGVTVRNDIIKVRSGVVN 187
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
P +YV+DTPG++ P I E +LALTGAI D VG + +A Y L +LN
Sbjct: 188 DKPAVYVVDTPGVMLPNIPSAETGMRLALTGAIKDEVVGTELIADYMLFLLN 239
>gi|373857305|ref|ZP_09600047.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus sp. 1NLA3E]
gi|372452955|gb|EHP26424.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus sp. 1NLA3E]
Length = 297
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 115/230 (50%), Gaps = 27/230 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ LVDII E+ DAR+PFSS D++ H P R+++LNK
Sbjct: 5 WFPGHMAKARREVTEKLKLVDIIFELVDARVPFSSRNPMIDEIIQHKP-----RLVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDAS 139
D+A K+WI +F + +NS +KE + K L ++ +
Sbjct: 60 ADMADREVTKQWIRYFQDNGVAALAINSQEGIGMKEIVIEAKKLLSEKFDKMKSRGINPR 119
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ + M++GIPN GKS L N L K A PG TK +K+
Sbjct: 120 A--IRAMIVGIPNAGKSTLINRL-----------AKKNIAKTGNTPGVTKAQQWIKVGKE 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ +LDTPGIL P+ D EV KLA+TGAI D+ + E+A Y L L
Sbjct: 167 --LELLDTPGILWPKFDDQEVGLKLAVTGAIKDTLLNMYEIAAYALQYLE 214
>gi|374997103|ref|YP_004972602.1| ribosome biogenesis GTP-binding protein YlqF [Desulfosporosinus
orientis DSM 765]
gi|357215469|gb|AET70087.1| ribosome biogenesis GTP-binding protein YlqF [Desulfosporosinus
orientis DSM 765]
Length = 277
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 122/227 (53%), Gaps = 18/227 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA R + +++ VD++LE+ DARIP SS L H + R+L+LNK DL
Sbjct: 5 WFPGHMAKTRRLLEEQLKWVDVVLELADARIPASSRNPML--HKLLGNKTRLLLLNKADL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVR--NLRKSDYDASSDTVT 144
A+P + +W+T +++ P F V++ +K+ + L+ VR +++ +
Sbjct: 63 AAPNETSKWLTHL-KESSPVFAVSATKGMGIKQIVPELEQMVRAKQAKQAAKGIRPQLIK 121
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPN+GKS+L N L ++ A K PG T+ ++I H + +
Sbjct: 122 AMIVGIPNIGKSSLINQLTGGAQVKVANK-----------PGVTRGNQWVRI--HERVEL 168
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFS 251
LDTPG+L P+ D++V KLA GA+ D +ELA + L LN +
Sbjct: 169 LDTPGMLWPKFDDLDVGRKLAALGAVKDDVFDLEELAAWVLEWLNLN 215
>gi|257867804|ref|ZP_05647457.1| GTP-binding protein [Enterococcus casseliflavus EC30]
gi|257874131|ref|ZP_05653784.1| GTP-binding protein [Enterococcus casseliflavus EC10]
gi|257876696|ref|ZP_05656349.1| GTP-binding protein [Enterococcus casseliflavus EC20]
gi|420263140|ref|ZP_14765779.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp. C1]
gi|257801887|gb|EEV30790.1| GTP-binding protein [Enterococcus casseliflavus EC30]
gi|257808295|gb|EEV37117.1| GTP-binding protein [Enterococcus casseliflavus EC10]
gi|257810862|gb|EEV39682.1| GTP-binding protein [Enterococcus casseliflavus EC20]
gi|394769774|gb|EJF49608.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp. C1]
Length = 288
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R +++++ VDI+ E+ DAR+P SS DQL P R++++NK
Sbjct: 5 WFPGHMAKARREVSEKLKFVDIVFELVDARLPISSRNPMLDQLLQQKP-----RLILINK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSD 141
DLA P Q K+W +F Q + +N+ + VK + + ++ R
Sbjct: 60 ADLADPVQTKKWEHYFQAQGYLALAINAQDNQGVKAIVPTAKQVLKEKIARDKARGLKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS L N L +G+ + A +PG TK L+ + +
Sbjct: 120 AIRAMVIGIPNVGKSTLMNRL--VGK---------KIAQTGNKPGVTKGQQWLRFGT--D 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D E+ KLALTGAI D + ++A Y L
Sbjct: 167 LELLDTPGILWPKFEDPEIGKKLALTGAIKDQLIHLDDIALYGL 210
>gi|325570948|ref|ZP_08146567.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus
casseliflavus ATCC 12755]
gi|325156274|gb|EGC68458.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus
casseliflavus ATCC 12755]
Length = 309
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R +++++ VDI+ E+ DAR+P SS DQL P R++++NK
Sbjct: 26 WFPGHMAKARREVSEKLKFVDIVFELVDARLPISSRNPMLDQLLQQKP-----RLILINK 80
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSD 141
DLA P Q K+W +F Q + +N+ + VK + + ++ R
Sbjct: 81 ADLADPVQTKKWEHYFQAQGYLALAINAQDNQGVKAIVPTAKQVLKEKIARDKARGLKPR 140
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS L N L +G+ + A +PG TK L+ + +
Sbjct: 141 AIRAMVIGIPNVGKSTLMNRL--VGK---------KIAQTGNKPGVTKGQQWLRFGT--D 187
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D E+ KLALTGAI D + ++A Y L
Sbjct: 188 LELLDTPGILWPKFEDPEIGKKLALTGAIKDQLIHLDDIALYGL 231
>gi|299536767|ref|ZP_07050075.1| hypothetical protein BFZC1_12128 [Lysinibacillus fusiformis ZC1]
gi|424737025|ref|ZP_18165481.1| hypothetical protein C518_1636 [Lysinibacillus fusiformis ZB2]
gi|298727779|gb|EFI68346.1| hypothetical protein BFZC1_12128 [Lysinibacillus fusiformis ZC1]
gi|422948857|gb|EKU43233.1| hypothetical protein C518_1636 [Lysinibacillus fusiformis ZB2]
Length = 291
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 120/235 (51%), Gaps = 25/235 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ LVDII E+ DAR+P SS D++ N P R+L+LNK
Sbjct: 5 WFPGHMAKARREVTEKLKLVDIIFELIDARLPLSSRNPMIDEVINQKP-----RLLILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
D+A + ++W+ +F ++ + +NS +++ K Q ++ R
Sbjct: 60 ADMADEQETRKWVEYFAKRGHKAVAINSLEGKGLQQVTKAAQEILKEKFDRMKARGMKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS L N L K A PG TK +K+
Sbjct: 120 AIRAMIVGIPNVGKSTLINRL-----------AKKNIAKTGNTPGVTKAQQWIKVGKE-- 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKK 256
+ +LDTPGIL P+ D EV KLALTGAI D+ ++LA Y G+ S+ Y K
Sbjct: 167 LELLDTPGILWPKFEDQEVGFKLALTGAIKDTITNMEDLAVY--GLRFLSNHYPK 219
>gi|402574090|ref|YP_006623433.1| Ras superfamily GTP-binding protein YlqF [Desulfosporosinus
meridiei DSM 13257]
gi|402255287|gb|AFQ45562.1| Ras superfamily GTP-binding protein YlqF [Desulfosporosinus
meridiei DSM 13257]
Length = 275
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 18/225 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA R + +++ VD++LE+ DARIP SS L H S R+L+LNK DL
Sbjct: 5 WFPGHMAKTRRLLTEQLKWVDVVLELADARIPVSSRNPML--HKLLGSKARLLLLNKADL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV--RNLRKSDYDASSDTVT 144
A+P +W+ + +++ P + V++ + +K+ + L+ V + R+++ +
Sbjct: 63 ANPNWTSKWVKYL-KESGPVYAVSATSGVGIKQIVPELERMVLAKQARQAEKGIRQQMIR 121
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
VM++GIPN+GKS+L N L T + K V +PG T+ ++I H + +
Sbjct: 122 VMIVGIPNIGKSSLINQL------TGGAQAK-----VGNKPGVTRGNQWVRI--HERVEL 168
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
LDTPG+L P+ D+EV KLA GAI D +EL+ + + N
Sbjct: 169 LDTPGMLWPKFDDLEVGRKLAALGAIKDDVFDIEELSTWVIEWFN 213
>gi|212275292|ref|NP_001130425.1| uncharacterized protein LOC100191522 [Zea mays]
gi|194689086|gb|ACF78627.1| unknown [Zea mays]
Length = 123
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/98 (62%), Positives = 74/98 (75%)
Query: 131 LRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKD 190
+R+ + S+ T T +L+GIPNVGKSA+ N++HQIGRI AAEKGKL+HA VS PGET+D
Sbjct: 1 MREIKHGDSNCTGTALLVGIPNVGKSAIVNAIHQIGRIAAAEKGKLKHAIVSSHPGETRD 60
Query: 191 IYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTG 228
I KIASHPNIYVLDTPG+L P D +LALTG
Sbjct: 61 IRGYKIASHPNIYVLDTPGVLSPRFADDGSGPRLALTG 98
>gi|335357305|ref|ZP_08549175.1| GTP-binding protein [Lactobacillus animalis KCTC 3501]
Length = 284
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 117/223 (52%), Gaps = 26/223 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + + + LVD++LE+ DAR+P SS QL++ I+VL KMDL
Sbjct: 6 WFPGHMAKALRQVKENLKLVDVVLELVDARLPESSRNPQLKDL--LQDKPSIIVLTKMDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL------RKSDYDASS 140
A P + ++WI ++++ P+ +NS V+ LK + ++ + K S
Sbjct: 64 ADPKETRKWIEYYEKMGQPAVAINS-----VQGSLKVIDKKIKEVLAEKLANKKARGILS 118
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ VM +GIPNVGKS L N L K A V +PG TK LK +
Sbjct: 119 QRIKVMCIGIPNVGKSTLLNHLV-----------KKNVAQVGNRPGVTKSQQWLK--AGK 165
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
++ +LDTPGIL P+ D V KLALTGAI D+ ++A Y
Sbjct: 166 DLQLLDTPGILWPKFEDPIVGKKLALTGAIKDTLYAEDDVALY 208
>gi|222151078|ref|YP_002560232.1| ribosomal biogenesis GTPase [Macrococcus caseolyticus JCSC5402]
gi|222120201|dbj|BAH17536.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 290
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 123/231 (53%), Gaps = 23/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ LVD++ E+ DARIP+SS D++ P R+++LNK
Sbjct: 5 WFPGHMAKARREVTEQLKLVDVVFELVDARIPYSSRNPMIDEVIKDKP-----RVVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDASSD 141
MD+A+ + K+W+++F++Q ++S N N+ + K + + R
Sbjct: 60 MDMANLNETKKWMSYFEEQGFYPVLIDSKNGKNLSQVTKAAEIVTQEKFERMKQKGLRPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS L N L + + A+ G + PG TK +K+
Sbjct: 120 AIRAMIVGIPNVGKSTLINRL---AKKSIAKTGNM--------PGVTKKQQWIKVGK--T 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSD 252
+ +LDTPGIL P+ D V KL+LTGAI DS V E+A Y + L D
Sbjct: 167 LELLDTPGILWPKFEDQTVGKKLSLTGAIKDSIVHLDEVAIYGISFLQERD 217
>gi|157151133|ref|YP_001450489.1| ribosomal biogenesis GTPase [Streptococcus gordonii str. Challis
substr. CH1]
gi|157075927|gb|ABV10610.1| GTP-binding protein [Streptococcus gordonii str. Challis substr.
CH1]
Length = 283
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 122/231 (52%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++LVLNK DL
Sbjct: 6 WFPGHMSKARRQVQESIKFVDFVTVLVDARLPLSSQNPML--TKIVGEKPKLLVLNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P + KEW T+F+ Q P+ +NS + VK+ K L A + R+ + +T+
Sbjct: 64 ADPVRLKEWQTYFEGQGIPTLALNSKEQSAVKKVTDAAKKLMAD-KLARQKERGIRIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D+ + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF--GLNYFKEHY 218
>gi|393201741|ref|YP_006463583.1| GTPase [Solibacillus silvestris StLB046]
gi|406664618|ref|ZP_11072393.1| Ribosome biogenesis GTPase A [Bacillus isronensis B3W22]
gi|327441072|dbj|BAK17437.1| predicted GTPase [Solibacillus silvestris StLB046]
gi|405387466|gb|EKB46890.1| Ribosome biogenesis GTPase A [Bacillus isronensis B3W22]
Length = 317
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 123/249 (49%), Gaps = 23/249 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R +++ + LVDI+ E+ DAR+P SS D++ + P R+L+LNK
Sbjct: 5 WFPGHMAKARRQVSESLKLVDIVFELVDARLPLSSRNPMIDEVIHQKP-----RLLILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
D+A + + WI +F + + +NS ++ K Q + + R
Sbjct: 60 QDMADEQETRRWIQYFADRGFKAVAINSLEGKGLQAVTKAAQEILADKWERMKSKGMKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS L N L K A PG TK +K+
Sbjct: 120 AIRAMIVGIPNVGKSTLINRL-----------AKKNLAKTGNMPGVTKAQQWIKVGKE-- 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
I +LDTPGIL P+ D EV KLALTGAI D+ + ++LA Y L L + ++
Sbjct: 167 IELLDTPGILWPKFEDQEVGYKLALTGAIKDTIMNMEDLAVYGLRFLETHYPTRMEERYK 226
Query: 262 INQINKPLT 270
I+ +++ L
Sbjct: 227 ISSVSEELV 235
>gi|428179013|gb|EKX47886.1| hypothetical protein GUITHDRAFT_106434 [Guillardia theta CCMP2712]
Length = 263
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 123/232 (53%), Gaps = 10/232 (4%)
Query: 32 MAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ 91
MA A R I R+ + D+++EVRDARIP +SE R + RR++VLNK DL P++
Sbjct: 1 MAEAVRKIEQRIKVSDMVIEVRDARIPLTSECA--RIQELLARKRRVIVLNKQDLILPSE 58
Query: 92 FKEWITFF-DQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGI 150
++W FF D+ + +F H N+KE + + H R L T+ M++GI
Sbjct: 59 REKWRKFFTDKGDTVTFTQAVHGA-NIKELMPS-ELHARGL----ISRLDRTLLCMIVGI 112
Query: 151 PNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGI 210
PN GKS L N+L G +K + A PG TK + +++ P +++DTPGI
Sbjct: 113 PNTGKSTLINTLRNFGYKDGKQKSPGKVANTGALPGVTKHVSTIQFHVKPPSFLVDTPGI 172
Query: 211 LPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262
+ ++ DV KLALTGAI DS + LA++ + +L+ + S+
Sbjct: 173 VKMDL-DVIDGLKLALTGAIKDSLIDPLILAEFLIHMLSMRQSTNYLTELSL 223
>gi|220931580|ref|YP_002508488.1| HSR1-like GTP-binding protein [Halothermothrix orenii H 168]
gi|219992890|gb|ACL69493.1| GTP-binding protein HSR1-related [Halothermothrix orenii H 168]
Length = 282
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 116/221 (52%), Gaps = 19/221 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA A + + + + LVDI++EV DARIP SS+ + + +R++VLNK+DL
Sbjct: 4 WYPSHMARARKVLIENLKLVDIVVEVLDARIPASSKNPDI--DSILDNKKRVIVLNKIDL 61
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRK--SDYDASSDTVT 144
A P W+ +F +++ P GVNS + + E + L+ + K + V
Sbjct: 62 AHPDLTSTWLDYF-RRSYPVMGVNSITGEGIGELKRLLRNEGERINKVLEEKGRQQRPVR 120
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
+M++GIPNVGKSA N L R+ + PG T+ LK+ + +
Sbjct: 121 IMVIGIPNVGKSAFLNILAGSNRVKTGNR-----------PGVTRGKQWLKLGK--GVQL 167
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
LDTPGIL P+I D E KLA+TGAI D KE A Y L
Sbjct: 168 LDTPGILWPKIEDEETGHKLAITGAI-DENNYDKETAAYKL 207
>gi|336392851|ref|ZP_08574250.1| putative GTP-binding protein [Lactobacillus coryniformis subsp.
torquens KCTC 3535]
Length = 285
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 115/227 (50%), Gaps = 27/227 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A + + +++ LVDI+LE+ DAR+P +S DQ+ P R+++LNK
Sbjct: 6 WFPGHMAKAKKQVQEKLHLVDIVLEIVDARLPLASRNPILDQIIQQKP-----RLMILNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV----RNLRKSDYDAS 139
DLA P WI +F Q P+ ++S + NV++ K QA V + R+
Sbjct: 61 ADLADPALNAAWINYFKQHGLPAISIDSQHNHNVQQIEK--QAQVILADKIARQQARGIK 118
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ + + +GIPNVGKS + N L K A PG TK LK
Sbjct: 119 NKPIRAICIGIPNVGKSTILNRL-----------VKRNVAITGNHPGVTKKQQWLKAGK- 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLG 246
++ +LDTPGIL P+ D V KLALTGAI DS ++A Y L
Sbjct: 167 -SLELLDTPGILWPKFEDPLVGKKLALTGAIKDSLYHADDVALYALA 212
>gi|301112340|ref|XP_002905249.1| GTPase, putative [Phytophthora infestans T30-4]
gi|262095579|gb|EEY53631.1| GTPase, putative [Phytophthora infestans T30-4]
Length = 314
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 126/231 (54%), Gaps = 20/231 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMD 85
W+ HMA A R + +M VD+++EVRDARIP+SS L F S+ R++V NK D
Sbjct: 16 WFPGHMALARRQMVAQMDAVDVLIEVRDARIPWSSANPVL--EEAFGKSKPRLVVFNKSD 73
Query: 86 LASPT-------QFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA 138
LA+ Q K + + +C V + ++ L++ H ++ + +
Sbjct: 74 LANSNMQQRVEKQCKNQLG--EATDCLFTSVTKGKR--LQAILQWCNKH----SQAQFKS 125
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
++ ++ VM++GIPNVGKS+L N ++ KG+ R ATV P PG T +K+
Sbjct: 126 TAGSM-VMVVGIPNVGKSSLINEFRRLSNSGKLAKGRSR-ATVGPTPGVTVRNDIIKVND 183
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
P +YV+DTPG++ P I E +LALTGAI D VG + +A Y L +LN
Sbjct: 184 KPAVYVVDTPGVMLPNIPSSETGMRLALTGAIKDDVVGTELIADYMLFLLN 234
>gi|421490766|ref|ZP_15938133.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
anginosus SK1138]
gi|400371763|gb|EJP24712.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
anginosus SK1138]
Length = 283
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 125/242 (51%), Gaps = 19/242 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A P KEW +F+++ + +NS + VK+F + Q+ ++ R+ + +T+
Sbjct: 64 ADPALTKEWRNYFEKKGVKTLPINSKEQSTVKKFTEAAQSLMKEKIARQKERGIQIETLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPN GKS L N L GK + A +PG TK LK S+ ++ +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA----------GK-KIAVTGNKPGVTKGQQWLK--SNRDLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
LDTPGIL P+ D +V KLALTGAI D + E+ GI F + Y K + Q
Sbjct: 171 LDTPGILWPKFEDEKVALKLALTGAIKDDLLPMDEVT--IFGINYFKEHYPKELQERFKQ 228
Query: 265 IN 266
++
Sbjct: 229 MD 230
>gi|420145723|ref|ZP_14653178.1| Ribosome biogenesis GTPase A [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398402623|gb|EJN55941.1| Ribosome biogenesis GTPase A [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 285
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 115/227 (50%), Gaps = 27/227 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A + + +++ LVDI+LE+ DAR+P +S DQ+ P R+++LNK
Sbjct: 6 WFPGHMAKAKKQVQEKLHLVDIVLEIVDARLPLASRNPILDQIIQQKP-----RLMILNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV----RNLRKSDYDAS 139
DLA P WI +F Q P+ ++S + NV++ K QA V + R+
Sbjct: 61 ADLADPALNAAWINYFKQHGLPAISIDSQHNHNVQQIEK--QAQVILADKIARQQARGIK 118
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ + + +GIPNVGKS + N L K A PG TK LK
Sbjct: 119 NKPIRAICIGIPNVGKSTILNRL-----------VKRNVAITGNHPGVTKKQQWLKAGK- 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLG 246
++ +LDTPGIL P+ D V KLALTGAI DS ++A Y L
Sbjct: 167 -SLELLDTPGILWPKFEDPLVGKKLALTGAIKDSLYHADDVALYALA 212
>gi|313885159|ref|ZP_07818911.1| ribosome biogenesis GTP-binding protein YlqF [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619850|gb|EFR31287.1| ribosome biogenesis GTP-binding protein YlqF [Eremococcus coleocola
ACS-139-V-Col8]
Length = 290
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 140/275 (50%), Gaps = 39/275 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R +++++ L+D+++E+ DARIP SS L++ +RI+VLNK DL
Sbjct: 6 WFPGHMAKARREVSEKLKLIDVVIELVDARIPESSRNPILQDL--IQDKKRIIVLNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNS-HNKDNVKEFLKFLQAHVRNLRKSDYDASSDT--- 142
A P + W+ + +Q + +++ HNK LK L+ ++ L +++ +
Sbjct: 64 ADPKLSQAWVKAYLEQGFKALSIDAQHNKG-----LKGLEKAIKELMAPEFEKLAQKGLK 118
Query: 143 ---VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ +M+LGIPNVGKS L N +G+ A +PG TK LKI
Sbjct: 119 PRPIRLMILGIPNVGKSTLINRF--VGK---------NQAITGNKPGVTKAQRWLKIGK- 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKKW 257
+ +LDTPGIL P+ D +V LALTGAI D + +LA L IL ++ D +
Sbjct: 167 -SFELLDTPGILWPKFEDEQVGINLALTGAIKDQLLHMDDLALTLLAILREHYLDSLCNY 225
Query: 258 AKFS------INQINKPLTLHH----KADQSSGSE 282
K S + ++ LTL K D +GSE
Sbjct: 226 TKLSNDSLAKLTNVDLLLTLSQNWGFKDDYDAGSE 260
>gi|383754889|ref|YP_005433792.1| putative ribosome biogenesis GTP-binding protein [Selenomonas
ruminantium subsp. lactilytica TAM6421]
gi|381366941|dbj|BAL83769.1| putative ribosome biogenesis GTP-binding protein [Selenomonas
ruminantium subsp. lactilytica TAM6421]
Length = 297
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 113/224 (50%), Gaps = 17/224 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM A R I + + LVD+++E+ DARIP SS L R++ LNK DL
Sbjct: 11 WFPGHMKKAQRLIEENLKLVDVVIELLDARIPLSSANPML--AEIIKDKPRMIALNKSDL 68
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDASSDTVT 144
A K+W+ +F Q P+ ++S +K+ +K + A + + A
Sbjct: 69 ADSASTKKWLDYFKAQGVPAVTIDSMKGKGMKQLVKVAEDLARPKTEKFVSKGAKPRAAR 128
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M+LGIPNVGKS+L N L + AA+K PG T+ +KI + N+ +
Sbjct: 129 CMILGIPNVGKSSLINRLAGAVKAKAADK-----------PGVTRAKQWIKIGT--NLDL 175
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
LDTPGIL P+ D V KLA TGAI D +++ LGI+
Sbjct: 176 LDTPGILWPKFEDQTVGLKLAFTGAINDDIYDREQVTALLLGIM 219
>gi|335038410|ref|ZP_08531661.1| ribosome biogenesis GTP-binding protein YlqF [Caldalkalibacillus
thermarum TA2.A1]
gi|334181699|gb|EGL84213.1| ribosome biogenesis GTP-binding protein YlqF [Caldalkalibacillus
thermarum TA2.A1]
Length = 290
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 124/228 (54%), Gaps = 25/228 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R + +++ L+D+++E+ DAR+PFSS+ D+L P R+++LNK
Sbjct: 5 WYPGHMAKAKRQVMEKLKLIDVVIELLDARLPFSSQNPMMDELVKDKP-----RLVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRK--SDYDASSD 141
DLA P+ ++W+ FF+++ + V++ + + +K Q R++ K +D
Sbjct: 60 KDLADPSVTEKWLRFFEKKAFQALAVDAQSGNGIKAIPSACQTLARDIMKKMTDKGMKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRH-ATVSPQPGETKDIYSLKIASHP 200
+ +++GIPNVGKS+L N L + RH A +PG TK +K
Sbjct: 120 PIRALIVGIPNVGKSSLINRLAK------------RHVAKTGDRPGVTKAQQWIKTGH-- 165
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P+ D V KLA +GAI D + +E+A + + L
Sbjct: 166 GLELLDTPGILWPKFDDPLVGLKLAASGAIRDEILPKEEVALFAIDFL 213
>gi|422851604|ref|ZP_16898274.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK150]
gi|325694492|gb|EGD36401.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK150]
Length = 283
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 122/231 (52%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P + KEW ++F+ Q P+ +NS + VK+ K L A + R+ + +T+
Sbjct: 64 ADPVRIKEWQSYFESQGIPTLSINSKEQSAVKKVTDAAKKLMAD-KLARQKERGIRIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D+ + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF--GLNYFKEHY 218
>gi|422884181|ref|ZP_16930630.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK49]
gi|332360874|gb|EGJ38680.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK49]
Length = 283
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 122/231 (52%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P + KEW ++F+ Q P+ +NS + VK+ K L A + R+ + +T+
Sbjct: 64 ADPVRIKEWQSYFESQGIPTLSINSKEQSAVKKVTDAAKKLMAD-KLARQKERGIRIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D+ + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF--GLNYFKEHY 218
>gi|422882299|ref|ZP_16928755.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK355]
gi|332360460|gb|EGJ38271.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK355]
Length = 283
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 122/231 (52%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P + KEW ++F+ Q P+ +NS + VK+ K L A + R+ + +T+
Sbjct: 64 ADPVRIKEWQSYFESQEIPTLSINSKEQSAVKKVTDAAKKLMAD-KLARQKERGIRIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D+ + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF--GLNYFKEHY 218
>gi|205373354|ref|ZP_03226158.1| hypothetical protein Bcoam_08560 [Bacillus coahuilensis m4-4]
Length = 285
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 117/231 (50%), Gaps = 31/231 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ LVDII E+ DARIP SS DQ+ P R+++LNK
Sbjct: 5 WFPGHMAKARREVTEKLKLVDIIFELVDARIPISSRNPMMDQIVQQKP-----RLVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
D+A P K WI +F ++ + +N+ + + +K + + K +D
Sbjct: 60 EDMADPELTKAWIAYFQERGIKAISLNAQEGNGLHAIVK----AAKEILKPKWDRMKAKG 115
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ + M++GIPNVGKS L N L K A PG TK +K+
Sbjct: 116 MNPRAIRAMIIGIPNVGKSTLINRL-----------AKKNIAKTGNTPGVTKAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P+ D EV KLA+TGAI D+ + ++++ Y L L
Sbjct: 165 KE--LELLDTPGILWPKFEDQEVGYKLAVTGAIKDTIINLQDISVYALRYL 213
>gi|323351560|ref|ZP_08087214.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis VMC66]
gi|322122046|gb|EFX93772.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis VMC66]
Length = 283
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 122/231 (52%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P + KEW ++F+ Q P+ +NS + VK+ K L A + R+ + +T+
Sbjct: 64 ADPVRIKEWQSYFESQGIPTLSINSKEQSAVKKVTDAAKKLMAD-KLARQKERGIRIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D+ + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF--GLNYFKEHY 218
>gi|422860127|ref|ZP_16906771.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK330]
gi|327470025|gb|EGF15489.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK330]
Length = 283
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 122/231 (52%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P + KEW ++F+ Q P+ +NS + VK+ K L A + R+ + +T+
Sbjct: 64 ADPVRIKEWQSYFESQGIPTLSINSKEQSAVKKVTDAAKKLMAD-KLARQKERGIRIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D+ + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF--GLNYFKEHY 218
>gi|422862517|ref|ZP_16909149.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK408]
gi|327474217|gb|EGF19624.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK408]
Length = 283
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 122/231 (52%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P + KEW ++F+ Q P+ +NS + VK+ K L A + R+ + +T+
Sbjct: 64 ADPVRIKEWQSYFESQEIPTLSINSKEQSAVKKVTDAAKKLMAD-KLARQKERGIRIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAIVGNKPGVTKGQQWLK--SNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D+ + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF--GLNYFKEHY 218
>gi|422848671|ref|ZP_16895347.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK115]
gi|325689692|gb|EGD31696.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK115]
Length = 283
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 121/230 (52%), Gaps = 19/230 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A P + KEW ++F+ Q P+ +NS + VK+ + + + R+ + +T+
Sbjct: 64 ADPVRIKEWQSYFESQGIPTLSINSKEQSAVKKVTDAAKKLMSDKLARQKERGIRIETLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPN GKS L N L GK + A V +PG TK LK S+ ++ +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
LDTPGIL P+ D V KLALTGAI D+ + E+ + G+ F + Y
Sbjct: 171 LDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF--GLDYFKEHY 218
>gi|381182604|ref|ZP_09891401.1| GTPase YlqF [Listeriaceae bacterium TTU M1-001]
gi|380317493|gb|EIA20815.1| GTPase YlqF [Listeriaceae bacterium TTU M1-001]
Length = 287
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 116/235 (49%), Gaps = 19/235 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ LVD+I E+ DARIP SS L +R+++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPML--EEIIHQKKRVIILNKSDA 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV--RNLRKSDYDASSDTVT 144
A EW+ F ++ + VN+ N+ + Q + + R+ + +
Sbjct: 63 ADEKITAEWVAHFKEKGLLAVPVNAQQGKNLHAIERAAQELMAEKFARQKERGMRPRAIR 122
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M+LGIPNVGKS L N L K A +PG TK +K+ + +
Sbjct: 123 AMILGIPNVGKSTLINRLV-----------KKNIAKTGNKPGVTKAQQWIKVGK--TLEL 169
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKKW 257
LDTPGIL P+ D EV KLALTGAI D + +E+A Y L L N+ ++ W
Sbjct: 170 LDTPGILWPKFEDQEVGFKLALTGAIKDDLLNMEEIALYGLHFLEKNYPNQLAAW 224
>gi|326204814|ref|ZP_08194668.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
papyrosolvens DSM 2782]
gi|325985026|gb|EGD45868.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
papyrosolvens DSM 2782]
Length = 292
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 130/268 (48%), Gaps = 35/268 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA R IA+ + LVD+I+E+ DARIPFSS E + L N+ P R++ NK
Sbjct: 5 WFPGHMAKTRRLIAENLKLVDVIIELLDARIPFSSRNPEINSLINNKP-----RLIAFNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT- 142
DLA ++WI ++ +Q +NS N + E ++A R L + +
Sbjct: 60 SDLADDRISRQWIKWYAEQGIDCILINSINGKGLNE----IKARARELMSEKIERNKAKG 115
Query: 143 -----VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
V M++GIPNVGKS+ N + +GR TA +PG T+ ++I
Sbjct: 116 KLFTPVRTMVVGIPNVGKSSFINKI--VGRATAV---------TGDRPGVTRGKQWIRIN 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
S I +LDTPGIL P+ D EV LA TGAI D + E+A L L+ + +
Sbjct: 165 SE--IELLDTPGILWPKFEDQEVGMNLAFTGAIKDDIMDTGEVAMELLHRLSKTYNTELC 222
Query: 258 AKFSIN----QINKPLTLHHKADQSSGS 281
+F + + KPL L + G
Sbjct: 223 TRFKLEPETIKDMKPLELLETVGRKRGC 250
>gi|440797040|gb|ELR18135.1| GTPase of unknown function subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 313
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 130/248 (52%), Gaps = 28/248 (11%)
Query: 27 WYGPHMAAATRAIADRMPL--VDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKM 84
W+ HMA ATR + +R+ VD++LEVRDARIPFS+ L RIL+L+K
Sbjct: 21 WFPGHMAKATRLMRERLNSGGVDVVLEVRDARIPFSAANSTLEGVLAQRHIPRILILHKA 80
Query: 85 DLASPTQFKEWITFFDQQNCPSFGVNSHNK---DNVKEFLKFLQAHVRNLRKSDYDASSD 141
DL + P+ G K + L+ + H + L D S
Sbjct: 81 DLT------------NHNLLPAPGAGKAGKAIQSLIPTALEHYKQHRQRLLGEGADDPST 128
Query: 142 T--------VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKL--RHATVSPQPGETKDI 191
+ +T+M++G+PNVGKS + NSL Q ++ ++K K + A P PG T+D+
Sbjct: 129 SCPGYPDKPLTLMIMGLPNVGKSTIINSLRQHC-LSDSDKKKRGSQFAKTGPLPGVTRDL 187
Query: 192 YSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFS 251
K++S P Y++DTPG++ P + + +V +LALTGA+ +S VG + +A Y L LN
Sbjct: 188 TGFKVSSKPLAYLVDTPGVMIPNVENADVGLRLALTGAVKESIVGKQAIADYLLYSLNRL 247
Query: 252 DEYKKWAK 259
+ ++ + K
Sbjct: 248 NAWEGYVK 255
>gi|422846663|ref|ZP_16893346.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK72]
gi|325687471|gb|EGD29492.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK72]
Length = 283
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 121/231 (52%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P + KEW +F+ Q P+ +NS + VK+ K L A + R+ + +T+
Sbjct: 64 ADPVRIKEWQNYFESQGIPTLSINSKEQSAVKKVTDAAKKLMAD-KLARQKERGIRIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D+ + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF--GLNYFKEHY 218
>gi|422865484|ref|ZP_16912109.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1058]
gi|327489684|gb|EGF21475.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1058]
Length = 283
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 121/231 (52%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P + KEW +F+ Q P+ +NS + VK+ K L A + R+ + +T+
Sbjct: 64 ADPVRIKEWQNYFESQGIPTLSINSKEQSAVKKVTDAAKKLMAD-KLARQKERGIRIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D+ + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF--GLNYFKEHY 218
>gi|422823564|ref|ZP_16871752.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK405]
gi|324992891|gb|EGC24811.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK405]
Length = 283
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 122/231 (52%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P + KEW ++F+ Q P+ +NS + VK+ K L A + R+ + +T+
Sbjct: 64 ADPVRIKEWQSYFESQGIPTLSINSKEQSAVKKVTDAAKKLMAD-KLERQKERGIRIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D+ + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF--GLNYFKEHY 218
>gi|422826354|ref|ZP_16874533.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK678]
gi|324994472|gb|EGC26385.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK678]
Length = 283
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 121/231 (52%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P + KEW +F+ Q P+ +NS + VK+ K L A + R+ + +T+
Sbjct: 64 ADPVRIKEWQNYFESQGIPTLSINSKEQSAVKKVTDAAKKLMAD-KLARQKERGIRIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D+ + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF--GLNYFKEHY 218
>gi|422870916|ref|ZP_16917409.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1087]
gi|328946297|gb|EGG40441.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1087]
Length = 283
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 122/231 (52%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P + KEW ++F+ Q P+ +NS + VK+ K L A + R+ + +T+
Sbjct: 64 ADPVRIKEWQSYFESQGIPTLSINSKEQSAVKKVTDAAKKLMAD-KLARQKERGIRIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D+ + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDEMVALKLALTGAIKDNLLPMDEVTIF--GLNYFKEHY 218
>gi|295396863|ref|ZP_06806991.1| ribosome biogenesis GTP-binding protein YlqF [Aerococcus viridans
ATCC 11563]
gi|294974889|gb|EFG50588.1| ribosome biogenesis GTP-binding protein YlqF [Aerococcus viridans
ATCC 11563]
Length = 291
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 17/221 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA A + + ++ VDI+LE+RDARIP +S L + R ++VLNK DL
Sbjct: 6 WYPGHMAKAKKEVQSQLNAVDIVLEIRDARIPTASMNPML--DEIIKNKRHMIVLNKQDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKS--DYDASSDTVT 144
A P Q KEW+ +N + ++S ++K F + L+ ++++ + ++
Sbjct: 64 ADPQQTKEWVKALSGENKLAIALDSKKLGDMKIFRQALKDFTQDIQDKWRNKGILHKSIR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
VM++GIPNVGKS N K + A V +PG TK +KI + +
Sbjct: 124 VMVIGIPNVGKSTFINQF-----------TKQKKAQVGNKPGVTKGQQWIKIDK--DFEL 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
LDTPGIL P+ D EV KLALTG I D+ ++A + L
Sbjct: 171 LDTPGILWPKFEDQEVADKLALTGGIKDTHFYKDDVALFAL 211
>gi|428296853|ref|YP_007135159.1| Ras superfamily GTP-binding protein YlqF [Calothrix sp. PCC 6303]
gi|428233397|gb|AFY99186.1| Ras superfamily GTP-binding protein YlqF [Calothrix sp. PCC 6303]
Length = 293
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 120/226 (53%), Gaps = 17/226 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H+A A R + +++ LVD++LEVRDARIP +++ QL + + +R+LV+NK+D+
Sbjct: 14 WYPGHIAKAERKLKEQLKLVDVVLEVRDARIPLATQHPQL--NEWIGTKKRVLVINKVDM 71
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAH--VRNLRKSDYDASSDTVT 144
+P WI +F Q + NS + + K QA N R+ + S V
Sbjct: 72 VTPAIRNVWIDWFKSQGETPYFTNSQQGNGIDALGKAAQAAGVELNQRRHNRGMLSRPVR 131
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
+++G PNVGKSAL N L + + +A + PG T+ + ++I+ I +
Sbjct: 132 AVVIGFPNVGKSALINRLLKKRVVESANR-----------PGVTRSLRWVRISDQ--IEL 178
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNF 250
LD PG++P ++ D E KLA+ IGD+ + +A F+ L +
Sbjct: 179 LDAPGVIPLKLEDQEAALKLAICDDIGDASYDNQLVASAFIDTLTY 224
>gi|327281444|ref|XP_003225458.1| PREDICTED: mitochondrial GTPase 1-like [Anolis carolinensis]
Length = 319
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 122/230 (53%), Gaps = 11/230 (4%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA + + R+ VD ILEV DARIPFS L+ +LVLNKMDL
Sbjct: 26 WFPGHMAKGLKDMKSRLRAVDCILEVHDARIPFSGRNPLLQE--ALGIRPHLLVLNKMDL 83
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYDASSDTVTV 145
A T + + +QQ KD NV + + + + N ++ + ++ +
Sbjct: 84 ADLTHKPQVLKRLEQQGFRHVVFTDCLKDENVMKIVPVVTELISNNQRYQRSENVES-CI 142
Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYV 204
M++G+PNVGKS++ NS+ R +KGK + V PG T+ + + +++ P I++
Sbjct: 143 MVIGVPNVGKSSVINSV----RRRHLKKGK--ASLVGGAPGVTRAVLTKIQVCERPLIFL 196
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
LDTPG+L P+I +E KLAL GAI D VG + +A Y L LN ++
Sbjct: 197 LDTPGVLSPQIECIETGLKLALCGAIKDHLVGEEIIADYLLYALNCQKQF 246
>gi|422821227|ref|ZP_16869420.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK353]
gi|324991141|gb|EGC23075.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK353]
Length = 283
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 121/231 (52%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P + KEW +F+ Q P+ +NS + VK+ K L A + R+ + +T+
Sbjct: 64 ADPVRIKEWQNYFESQGIPTLSINSKEQSAVKKVTDAAKKLMAD-KLARQKERGIRIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D+ + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF--GLNYFKEHY 218
>gi|125718011|ref|YP_001035144.1| ribosomal biogenesis GTPase [Streptococcus sanguinis SK36]
gi|125497928|gb|ABN44594.1| GTP-binding protein, putative [Streptococcus sanguinis SK36]
Length = 283
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 118/222 (53%), Gaps = 19/222 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P + KEW ++F+ Q P+ +NS + VK+ K L A + R+ + +T+
Sbjct: 64 ADPVRIKEWQSYFESQEIPTLSINSKEQSAVKKVTDAAKKLMAD-KLARQKERGIRIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D V KLALTGAI D+ + E+ + L
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIFGL 211
>gi|422876383|ref|ZP_16922853.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1056]
gi|332361191|gb|EGJ38995.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1056]
Length = 283
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 121/231 (52%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P + KEW +F+ Q P+ +NS + VK+ K L A + R+ + +T+
Sbjct: 64 ADPVRIKEWQRYFESQGIPTLSINSKEQSAVKKVTDAAKKLMAD-KLARQKERGIRIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D+ + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF--GLNYFKEHY 218
>gi|348507344|ref|XP_003441216.1| PREDICTED: mitochondrial GTPase 1-like [Oreochromis niloticus]
Length = 319
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 129/243 (53%), Gaps = 15/243 (6%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA + + + VD I+E+ DARIPFS ++ S+ +L+LNKMDL
Sbjct: 27 WFPGHMAKGLKQMRANLKSVDCIIEIHDARIPFSGRNPVFQD--TLSAKPHLLILNKMDL 84
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNK---DNVKEFLKFLQAHVRNLRKSDYDASSDT- 142
A + + + +++ K DN+K+ + + + + K ++ +T
Sbjct: 85 ADLSNKQRILKKLEKEGMTHVLFTDCLKQRDDNIKKLVPMVMDIIAS--KPRFNREENTN 142
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPN 201
+M++G+PNVGKS+L NSL R T +KG R + V +PG TK + + +++ P
Sbjct: 143 YCLMVIGVPNVGKSSLINSL----RRTNLKKG--RASRVGGEPGITKAVLTKIQVCERPI 196
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
+Y+LDTPG+LPP+I VE KLAL G I D VG +A Y L LN ++ K+
Sbjct: 197 MYLLDTPGVLPPKIESVETGMKLALCGTILDHLVGEDIIADYLLYSLNRLGKFSYVEKYD 256
Query: 262 INQ 264
+ +
Sbjct: 257 LQE 259
>gi|422855507|ref|ZP_16902165.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1]
gi|327462196|gb|EGF08523.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1]
Length = 283
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 122/231 (52%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P + KEW ++F+ Q P+ +NS + VK+ K L A + R+ + +T+
Sbjct: 64 ADPVRIKEWRSYFESQGIPTLSINSKEQSAVKKVTDAAKKLMAD-KLARQKERGIRIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D+ + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDEIVALKLALTGAIKDNLLPMDEVTIF--GLNYFKEHY 218
>gi|422854280|ref|ZP_16900944.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK160]
gi|325696516|gb|EGD38406.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK160]
Length = 283
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 118/222 (53%), Gaps = 19/222 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P + KEW ++F+ Q P+ +NS + VK+ K L A + R+ + +T+
Sbjct: 64 ADPVRIKEWQSYFESQGIPTLSINSKEQSAVKKVTDAAKKLMAD-KLARQKERGIRIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D V KLALTGAI D+ + E+ + L
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIFGL 211
>gi|313896226|ref|ZP_07829779.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp. oral
taxon 137 str. F0430]
gi|312975025|gb|EFR40487.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp. oral
taxon 137 str. F0430]
Length = 303
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 114/215 (53%), Gaps = 19/215 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A R + + + LVD+++E+ DARIP SS LR + R++VLNK DL
Sbjct: 14 WYPGHMRKAERLVQENLKLVDVVIELLDARIPMSSANPVLR--EIVAGKTRLIVLNKSDL 71
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDASSDTVT 144
A PT + W+ +F Q+ + V++ KE ++ +Q A R + + + A
Sbjct: 72 ADPTATRAWVQYFASQDIVAVPVDAVKGSGTKELVQAIQKLAAPRTEKLAKHGAKPRAAR 131
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M+LGIPNVGKS+L N R++ + K V +PG T+ ++I + + +
Sbjct: 132 CMILGIPNVGKSSLIN------RLSGGARTK-----VENRPGVTRAKQWIRIGAQ--LEL 178
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSF--VGG 237
LD PGIL P+ D +LA TGAI D+ VGG
Sbjct: 179 LDMPGILWPKFEDARAALRLAFTGAISDTVYDVGG 213
>gi|262282235|ref|ZP_06060003.1| ribosomal biogenesis GTPase [Streptococcus sp. 2_1_36FAA]
gi|262261526|gb|EEY80224.1| ribosomal biogenesis GTPase [Streptococcus sp. 2_1_36FAA]
Length = 283
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 121/231 (52%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQESIKFVDFVTVLVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P + KEW T+F+ Q P+ +NS + VK+ K L A + R+ +T+
Sbjct: 64 ADPVRLKEWQTYFEGQGIPTLALNSKEQSAVKKVTDAAKKLMAD-KLARQKGRGIRIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D+ + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDEMVALKLALTGAIKDNLLPMDEVTIF--GLNYFKEHY 218
>gi|417920255|ref|ZP_12563767.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
australis ATCC 700641]
gi|342829906|gb|EGU64247.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
australis ATCC 700641]
Length = 283
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 123/243 (50%), Gaps = 21/243 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPML--TKIVGDKPKLMILNKVDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK+ K L A + R+ + +T+
Sbjct: 64 ADPVATKEWQEYFESQGIKTLAINSKEQSTVKKVTDAAKSLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSIN 263
+LDTPGIL P+ D +V KLALTGAI D + E+ G+ F Y K +
Sbjct: 170 ILDTPGILWPKFEDEDVALKLALTGAIKDQLLPMDEVT--IFGLEYFKSHYPKELQERYK 227
Query: 264 QIN 266
Q+N
Sbjct: 228 QMN 230
>gi|74194747|dbj|BAE25976.1| unnamed protein product [Mus musculus]
Length = 326
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 122/228 (53%), Gaps = 17/228 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA + + + VD ++EV DARIPFS F +L P +LVLNK
Sbjct: 29 WFPGHMAKGLKKMQSSLKSVDCVIEVHDARIPFSGRNPLFQELLGLKP-----HLLVLNK 83
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYDASSDT 142
MDLA T+ ++ + +++ + + KD N+K+ + + +R + + A +
Sbjct: 84 MDLADLTEQQKIVQRLEEKGLSNVLFTNCVKDENIKQIVPKVMELIRCSYRY-HRAETPE 142
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPN 201
+M++G+PNVGKS+L NSL R GK A V +PG T+ + S +++ P
Sbjct: 143 YCIMVVGVPNVGKSSLINSL----RRQHLRTGK--AARVGGEPGITRAVTSRIQVCERPL 196
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+++LDTPG+L P I VE KLAL G + D VG + +A Y L LN
Sbjct: 197 VFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 244
>gi|452995936|emb|CCQ92337.1| ribosome biogenesis GTPase A [Clostridium ultunense Esp]
Length = 286
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 135/260 (51%), Gaps = 24/260 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +R+ ++DI+ E+ DARIP +S+ D++ H P RI++LNK
Sbjct: 5 WFPGHMAKARRQVEERLKIIDIVFELLDARIPSASQNPMMDEIVGHKP-----RIILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
DL+ P KEW++FF+++ + ++S + ++ K ++ +++ ++
Sbjct: 60 YDLSDPAVTKEWVSFFERKGGHALPIDSLSGRGLETIPKLAESLTQSVQDKRQAKGMKGR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS+L N L K A +PG TK +K N
Sbjct: 120 AIRAMIVGIPNVGKSSLINRL-----------AKRSVAQTGDRPGVTKSQQWIKTGK--N 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
+ +LDTPGIL P+ + V LA TGAI D + ++A + L I+ E + ++
Sbjct: 167 LDLLDTPGILWPKFGEERVGYLLAATGAIRDEILDIYDVALFTLKIMKERYEKRLVERYG 226
Query: 262 INQ-INKPLTLHHKADQSSG 280
+ + ++ PL + + + G
Sbjct: 227 LEEGVSDPLQILEEIGRKRG 246
>gi|442805506|ref|YP_007373655.1| ribosome biogenesis GTPase A [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442741356|gb|AGC69045.1| ribosome biogenesis GTPase A [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 301
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 133/265 (50%), Gaps = 33/265 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA R +A+ + L+D+++E+ DARIP SS E D+L + P R++ LNK
Sbjct: 5 WFPGHMAKTRRMLAENLKLIDVVIELLDARIPRSSQNPEIDKLTKNKP-----RVIALNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVR-NLRK-SDYDASSD 141
DLA P + + W+ +F+Q + +N+ + + + L+ + LRK ++
Sbjct: 60 SDLADPRKTERWVEYFNQNGIDTVCINALTGEGIPALVVQLKKMMEPKLRKVAEKGRIQR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKSAL N + GK AT +PG T++ ++I +P
Sbjct: 120 PIRTMIVGIPNVGKSALINKIA----------GKAAAAT-GDRPGVTRNKQWVRI--NPE 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKWAK 259
I +LDTPGIL P+ D + LA TGAI D + LA L +L + E K K
Sbjct: 167 IQLLDTPGILWPKFDDPKTGLYLAFTGAIRDEILDITTLASNLLELLAKMYPTELKNRYK 226
Query: 260 FSINQINKPLTLHHKADQSSGSESG 284
F TL KA E+G
Sbjct: 227 FD--------TLEGKAGHVLLEEAG 243
>gi|15615039|ref|NP_243342.1| hypothetical protein BH2476 [Bacillus halodurans C-125]
gi|4514314|dbj|BAA75361.1| YlqF [Bacillus halodurans]
gi|10175096|dbj|BAB06195.1| BH2476 [Bacillus halodurans C-125]
Length = 284
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 123/244 (50%), Gaps = 23/244 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R+++LNK
Sbjct: 5 WFPGHMAKARREVTEKLKLIDVVIELLDARVPLSSRNPMMDEIVAHKP-----RLVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
DLA P++ KEW FF++ +N+ V Q + L ++
Sbjct: 60 DDLADPSKTKEWTRFFEEGGATVLPINAQTGQGVSRISPACQTLAQALIEKQRAKGMKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M+LGIPNVGKS L N L A K R A V +PG TK +K+
Sbjct: 120 AIRAMILGIPNVGKSTLINRL--------ASK---RIAKVGDRPGITKQQQWIKVGKE-- 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
+ +LDTPGIL P+ D +LA TGAI D + +++A + L + + ++
Sbjct: 167 LELLDTPGILWPKFDDQATGFRLAATGAIKDELLDFQDVALFVLRYMREMYPDRLMDRYK 226
Query: 262 INQI 265
+N++
Sbjct: 227 LNEL 230
>gi|414155585|ref|ZP_11411896.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
F0442]
gi|410872810|gb|EKS20749.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
F0442]
Length = 283
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 119/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPML--TKIVGEKPKLMILNKVDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK+ K L A + R+ + +T+
Sbjct: 64 ADPVATKEWQDYFESQGIKTLAINSKEQSTVKKVTDAAKSLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D EV KLALTGAI D + E+ G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDEEVALKLALTGAIKDQLLPMDEVT--IFGLNYFKEHY 218
>gi|116492735|ref|YP_804470.1| GTP-binding protein YlqF [Pediococcus pentosaceus ATCC 25745]
gi|116102885|gb|ABJ68028.1| Ras superfamily GTP-binding protein YlqF [Pediococcus pentosaceus
ATCC 25745]
Length = 287
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 119/232 (51%), Gaps = 19/232 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA A R + +++ LVDI+ E+ DARIP SS + + S +L+L K DL
Sbjct: 6 WYPGHMAKAIRQVEEKLKLVDIVFELVDARIPVSSRNPMIED--VIKSKPHLLILTKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A P + K+W+ ++ +N + +NS LK Q + + K+D + +
Sbjct: 64 ADPKETKKWLDYYKSRNEYAIALNSKEPSTENIILKKTQEILADKLANKADRGIKNAEIR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M +GIPNVGKS L N H + + + A +PG TK L+ S +Y+
Sbjct: 124 SMCIGIPNVGKSTLLN--HLVNK---------KVAITGDRPGVTKKQQWLR--SRRGLYL 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKK 256
LDTPGIL P+ D V +KLA TGAI D+ ++ Y L I F + Y++
Sbjct: 171 LDTPGILWPKFEDQNVGNKLAFTGAIKDNLFANDDVVIYGLNI--FINHYRE 220
>gi|421893943|ref|ZP_16324435.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
pentosaceus IE-3]
gi|385273104|emb|CCG89807.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
pentosaceus IE-3]
Length = 287
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 119/232 (51%), Gaps = 19/232 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA A R + +++ LVDI+ E+ DARIP SS + + S +L+L K DL
Sbjct: 6 WYPGHMAKAIRQVEEKLKLVDIVFELVDARIPVSSRNPMIED--VIKSKPHLLILTKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A P + K+W+ ++ +N + +NS LK Q + + K+D + +
Sbjct: 64 ADPKETKKWLDYYKSRNEYAIALNSKEPSTENIILKKTQEILADKLANKADRGIKNAEIR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M +GIPNVGKS L N H + + + A +PG TK L+ S +Y+
Sbjct: 124 SMCIGIPNVGKSTLLN--HLVNK---------KVAITGDRPGVTKKQQWLR--SRRGLYL 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKK 256
LDTPGIL P+ D V +KLA TGAI D+ ++ Y L I F + Y++
Sbjct: 171 LDTPGILWPKFEDQNVGNKLAFTGAIKDNLFANDDVVIYGLNI--FINHYRE 220
>gi|188528646|ref|NP_955005.2| mitochondrial GTPase 1 [Mus musculus]
gi|134034175|sp|Q8R2R6.2|MTG1_MOUSE RecName: Full=Mitochondrial GTPase 1; AltName: Full=GTP-binding
protein 7; Flags: Precursor
gi|74190443|dbj|BAE25897.1| unnamed protein product [Mus musculus]
Length = 326
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 122/228 (53%), Gaps = 17/228 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA + + + VD ++EV DARIPFS F +L P +LVLNK
Sbjct: 29 WFPGHMAKGLKKMQSSLKSVDCVIEVHDARIPFSGRNPLFQELLGLKP-----HLLVLNK 83
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYDASSDT 142
MDLA T+ ++ + +++ + + KD N+K+ + + +R + + A +
Sbjct: 84 MDLADLTEQQKIVQRLEEKGLSNVLFTNCVKDENIKQIVPKVMELIRCSYRY-HRAETPE 142
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPN 201
+M++G+PNVGKS+L NSL R GK A V +PG T+ + S +++ P
Sbjct: 143 YCIMVVGVPNVGKSSLINSL----RRQHLRTGK--AARVGGEPGITRAVTSRIQVCERPL 196
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+++LDTPG+L P I VE KLAL G + D VG + +A Y L LN
Sbjct: 197 VFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 244
>gi|387879575|ref|YP_006309878.1| GTP-binding protein [Streptococcus parasanguinis FW213]
gi|386793028|gb|AFJ26063.1| GTP-binding protein [Streptococcus parasanguinis FW213]
Length = 291
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 119/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 14 WFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPML--TKIVGDKPKLMILNKVDL 71
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK+ K L A + R+ + +T+
Sbjct: 72 ADPVATKEWQDYFESQGIKTLAINSKEQSTVKKVTDAAKSLMAD-KIARQKERGIQIETL 130
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 131 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 177
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D EV KLALTGAI D + E+ G+ F + Y
Sbjct: 178 ILDTPGILWPKFEDEEVALKLALTGAIKDQLLPMDEVT--IFGLNYFKEHY 226
>gi|326803549|ref|YP_004321367.1| ribosome biogenesis GTP-binding protein YlqF [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650327|gb|AEA00510.1| ribosome biogenesis GTP-binding protein YlqF [Aerococcus urinae
ACS-120-V-Col10a]
Length = 293
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 118/228 (51%), Gaps = 25/228 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ VD ++E+RDARIP +S+ DQ+ +R++VLNK
Sbjct: 6 WFPGHMAKAKRQVQEQLKSVDWVVEIRDARIPIASKNPLIDQI-----IQQKKRLIVLNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKS--DYDASSD 141
DLA P Q K W+ ++ + ++S N +K+ +L R+ D
Sbjct: 61 ADLADPNQNKLWLNHLRNKDTDAIAIDSKNNKEIKKLRHYLLEVTGGERQKWLDKGMKQK 120
Query: 142 TVTVMLLGIPNVGKSALANSL-HQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
T+ +M+LGIPNVGKS L N L H+ + A V +PG TK ++I
Sbjct: 121 TIRLMVLGIPNVGKSTLINQLTHK------------KSAKVGNRPGVTKGQQWVQIDK-- 166
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P+ D V LALTGAI D+ ++A Y + +
Sbjct: 167 DFSLLDTPGILWPKFEDPLVGMNLALTGAIKDTHYYSDDIALYAMQFM 214
>gi|20073169|gb|AAH27306.1| Mitochondrial GTPase 1 homolog (S. cerevisiae) [Mus musculus]
Length = 327
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 122/228 (53%), Gaps = 17/228 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA + + + VD ++EV DARIPFS F +L P +LVLNK
Sbjct: 29 WFPGHMAKGLKKMQSSLKSVDCVIEVHDARIPFSGRNPLFQELLGLKP-----HLLVLNK 83
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYDASSDT 142
MDLA T+ ++ + +++ + + KD N+K+ + + +R + + A +
Sbjct: 84 MDLADLTEQQKIVQRLEEKGLSNVLFTNCVKDENIKQIVPKVMELIRCSYRY-HRAETPE 142
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPN 201
+M++G+PNVGKS+L NSL R GK A V +PG T+ + S +++ P
Sbjct: 143 YCIMVVGVPNVGKSSLINSL----RRQHLRTGK--AARVGGEPGITRAVTSRIQVCERPL 196
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+++LDTPG+L P I VE KLAL G + D VG + +A Y L LN
Sbjct: 197 VFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 244
>gi|410460657|ref|ZP_11314331.1| GTPase YlqF [Bacillus azotoformans LMG 9581]
gi|409926711|gb|EKN63865.1| GTPase YlqF [Bacillus azotoformans LMG 9581]
Length = 285
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 135/256 (52%), Gaps = 36/256 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DARIP+SS D++ + P R+++LNK
Sbjct: 5 WFPGHMAKAKRQVIEKLKLIDVVIELVDARIPYSSRNPMIDEIISGKP-----RLVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
DLA P + EWI +F+ + +N+ K+++K + + + L + +D
Sbjct: 60 ADLADPKKTDEWIIYFENKGYKCLAINAQTKNDMKNII----SECKALTQEKFDKMRAKG 115
Query: 138 -ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI 196
++ + +++GIPNVGKS L N L A K A +PG T +K+
Sbjct: 116 IKNTRAIRALIVGIPNVGKSTLINRL--------ANKP---IAKTGDRPGVTTGQQWIKV 164
Query: 197 ASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEY 254
+LDTPGIL P+ D EV +LA+TGAI ++ + +++ Y L L + D
Sbjct: 165 GKE--FELLDTPGILWPKFEDQEVGYRLAVTGAIKENLLDFQDVVVYALKFLTKYYPDNL 222
Query: 255 KKWAKFSINQINKPLT 270
K+ ++ +N+I+ +
Sbjct: 223 KE--RYQLNEISTEMV 236
>gi|419799417|ref|ZP_14324765.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis F0449]
gi|385698101|gb|EIG28487.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis F0449]
Length = 283
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 119/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPML--TKIVGDKPKLMILNKVDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK+ K L A + R+ + +T+
Sbjct: 64 ADPVATKEWQDYFESQGIKTLAINSKEQSTVKKVTDAAKSLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D EV KLALTGAI D + E+ G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDEEVALKLALTGAIKDQLLPMDEVT--IFGLNYFKEHY 218
>gi|212639583|ref|YP_002316103.1| ribosomal biogenesis GTPase [Anoxybacillus flavithermus WK1]
gi|338819263|sp|B7GGD6.1|RBGA_ANOFW RecName: Full=Ribosome biogenesis GTPase A
gi|212561063|gb|ACJ34118.1| Predicted GTPase [Anoxybacillus flavithermus WK1]
Length = 284
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 120/234 (51%), Gaps = 36/234 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+DI+ E+ DARIP SS D++ + P RI++LNK
Sbjct: 8 WFPGHMAKAKREVTEKLKLIDIVFELVDARIPMSSRNPLIDEIVANKP-----RIILLNK 62
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKS 134
D+A P K+W+ FF Q + ++S + VK+ + KF + + +++
Sbjct: 63 ADMADPDVTKQWVDFFAAQQIDAIAIDSQSGTGVKQMVAVAKEKLRSKFEKMMAKGMKRP 122
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ +++GIPNVGKS L N L GK A PG TK +
Sbjct: 123 R------AMRALIVGIPNVGKSTLINRLA----------GK-HIAKTGDTPGVTKAQQWI 165
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
K+ + +LDTPGIL P+ D EV KLA TGAI D+ + +++A Y L L
Sbjct: 166 KVGKE--LELLDTPGILWPKFEDEEVGYKLATTGAIKDTILNLQDVAVYALRFL 217
>gi|319947077|ref|ZP_08021311.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
australis ATCC 700641]
gi|319747125|gb|EFV99384.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
australis ATCC 700641]
Length = 290
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 123/243 (50%), Gaps = 21/243 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 13 WFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPML--TKIVGDKPKLMILNKVDL 70
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK+ K L A + R+ + +T+
Sbjct: 71 ADPVATKEWQEYFESQGIKTLAINSKEQSTVKKVTDAAKSLMAD-KIARQKERGIQIETL 129
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 130 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 176
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSIN 263
+LDTPGIL P+ D +V KLALTGAI D + E+ G+ F Y K +
Sbjct: 177 ILDTPGILWPKFEDEDVALKLALTGAIKDQLLPMDEVT--IFGLEYFKSHYPKELQERYK 234
Query: 264 QIN 266
Q+N
Sbjct: 235 QMN 237
>gi|337282013|ref|YP_004621484.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis ATCC 15912]
gi|335369606|gb|AEH55556.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis ATCC 15912]
Length = 286
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 119/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 9 WFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPML--TKIVGDKPKLMILNKVDL 66
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK+ K L A + R+ + +T+
Sbjct: 67 ADPVATKEWQDYFESQGIKTLAINSKEQSTVKKVTDAAKSLMAD-KIARQKERGIQIETL 125
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 126 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 172
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D EV KLALTGAI D + E+ G+ F + Y
Sbjct: 173 ILDTPGILWPKFEDEEVALKLALTGAIKDQLLPMDEVT--IFGLNYFKEHY 221
>gi|422878828|ref|ZP_16925294.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1059]
gi|422928676|ref|ZP_16961618.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis ATCC 29667]
gi|422931651|ref|ZP_16964582.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK340]
gi|332366881|gb|EGJ44622.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1059]
gi|339616318|gb|EGQ20970.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis ATCC 29667]
gi|339619951|gb|EGQ24526.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK340]
Length = 283
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 121/231 (52%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P + KEW +F+ Q P+ +NS + VK+ K L A + R+ + +T+
Sbjct: 64 ADPVRIKEWQRYFESQGIPTLSINSKEQSAVKKVTDAAKKLMAD-KLARQKERGIRIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D+ + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDEIVALKLALTGAIKDNLLPMDEVTIF--GLNYFKEHY 218
>gi|392338002|ref|XP_003753415.1| PREDICTED: mitochondrial GTPase 1-like [Rattus norvegicus]
gi|392344722|ref|XP_003749050.1| PREDICTED: mitochondrial GTPase 1-like [Rattus norvegicus]
Length = 326
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 121/231 (52%), Gaps = 23/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA + + + LVD ++EV DARIPFS F +L P +LVLNK
Sbjct: 29 WFPGHMAKGLKKMQSSLKLVDCVIEVHDARIPFSGRNPLFQELLGLKP-----HLLVLNK 83
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYD---AS 139
MDLA T+ ++ + +++ + + KD N+K+ + V L Y A
Sbjct: 84 MDLADLTEQQKIVQHLEEKGLRNVIFTNCIKDENIKQII----PKVTELIGCSYRYHRAE 139
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIAS 198
+ +M++G+PNVGKS+L NSL R GK A V +PG T+ + S +++
Sbjct: 140 NPEYCIMVVGVPNVGKSSLINSL----RRQHLRTGK--AARVGGEPGITRAVTSRIQVCE 193
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
P +++LDTPG+L P I VE KLAL G + D VG + +A Y L LN
Sbjct: 194 RPLMFLLDTPGVLAPRIQSVETGLKLALCGTVLDHLVGEETMADYLLYTLN 244
>gi|149183640|ref|ZP_01862057.1| ribosomal biogenesis GTPase [Bacillus sp. SG-1]
gi|148848657|gb|EDL62890.1| ribosomal biogenesis GTPase [Bacillus sp. SG-1]
Length = 287
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 115/230 (50%), Gaps = 27/230 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ LVDII+E+ DARIP SS D++ P R+++LNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLVDIIIELVDARIPISSRNPMIDEVVQQKP-----RLVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNK----DNVKEFLKFLQAHVRNLRKSDYDAS 139
D+A +WI +F ++ + VN+ D VK + L +R
Sbjct: 60 ADMADKVLTDQWINYFSERGIKALAVNAQGGTGLGDIVKASKEILSEKFDRMRSRGMKPR 119
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ + M++GIPNVGKS L N L K A PG TK +K+
Sbjct: 120 A--IRAMIVGIPNVGKSTLINRL-----------AKKNIAKTGNTPGVTKAQQWIKVGKE 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ +LDTPGIL P+ D EV KLALTGAI D+ + +++A Y L L
Sbjct: 167 --MELLDTPGILWPKFEDEEVGYKLALTGAIKDTILNLQDIAVYGLRFLE 214
>gi|357050878|ref|ZP_09112074.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus
saccharolyticus 30_1]
gi|355380503|gb|EHG27639.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus
saccharolyticus 30_1]
Length = 289
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 126/248 (50%), Gaps = 27/248 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R +++++ VDI+ E+ DAR+P SS DQ+ P R++++NK
Sbjct: 6 WFPGHMAKAKREVSEKLKFVDIVFELVDARLPVSSRNPMLDQILQQKP-----RLILINK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDAS 139
DLA P Q K W +F +Q + +N+ + +K + + LQ + R
Sbjct: 61 ADLADPQQTKLWEGYFRKQGFLAMAINAQDSQGIKMIVPKAKEVLQEKI--ARDKARGLK 118
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS L N L +G+ + A +PG TK L+ +
Sbjct: 119 PRPIRAMVIGIPNVGKSTLMNRL--VGK---------KIAQTGNKPGVTKGQQWLRFGTE 167
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAK 259
+ +LDTPGIL P+ D E+ KLALTGAI D + ++A + L E + +
Sbjct: 168 --LELLDTPGILWPKFEDPEIGKKLALTGAIKDQLIHLDDIALFGLDFFARYYEGRIAQR 225
Query: 260 FSINQINK 267
+S++ + +
Sbjct: 226 YSLSAVEE 233
>gi|152976204|ref|YP_001375721.1| ribosomal biogenesis GTPase [Bacillus cytotoxicus NVH 391-98]
gi|152024956|gb|ABS22726.1| GTP-binding protein HSR1-related [Bacillus cytotoxicus NVH 391-98]
Length = 287
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 31/228 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WIT+F+++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWITYFEEKGHKAISINAQAGQGMKE----ITAACKELVKEKFDKMIAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IKPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L
Sbjct: 165 KE--MELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYAL 210
>gi|402304192|ref|ZP_10823268.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp.
FOBRC9]
gi|400375431|gb|EJP28332.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp.
FOBRC9]
Length = 304
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 114/215 (53%), Gaps = 19/215 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A R + + + LVD+++E+ DARIP SS LR + R++VLNK DL
Sbjct: 15 WYPGHMRKAERLVKENLKLVDVVVELLDARIPMSSANPVLR--EIVAGKTRLIVLNKSDL 72
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDASSDTVT 144
A PT + W+ +F Q+ + V++ KE ++ +Q A R + + + A
Sbjct: 73 ADPTATRAWVQYFASQDIVAVPVDAVKGSGTKELVQAIQKLAAPRTEKLAKHGAKPRAAR 132
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M+LGIPNVGKS+L N R++ + K V +PG T+ ++I + + +
Sbjct: 133 CMILGIPNVGKSSLIN------RLSGGARTK-----VENRPGVTRAKQWIRIGAQ--LEL 179
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSF--VGG 237
LD PGIL P+ D +LA TGAI D+ VGG
Sbjct: 180 LDMPGILWPKFEDAHAALRLAFTGAISDTVYDVGG 214
>gi|417917088|ref|ZP_12560650.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis SK236]
gi|342830737|gb|EGU65062.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis SK236]
Length = 283
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + D + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQDSLKFVDFVTVLVDARLPLSSQNPML--TKIVGDKPKLMILNKGDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK+ K L A + R+ + +T+
Sbjct: 64 ADPVATKEWQDYFESQGIKTLAINSKEQSTVKKVTDAAKSLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D EV KLALTGAI D + E+ G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDEEVALKLALTGAIKDQLLPMDEVT--IFGLNYFKEHY 218
>gi|339640338|ref|ZP_08661782.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
oral taxon 056 str. F0418]
gi|339453607|gb|EGP66222.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
oral taxon 056 str. F0418]
Length = 283
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 121/231 (52%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P + KEW +F+ Q P+ +NS + VK+ K L A + R+ + +T+
Sbjct: 64 ADPVRIKEWQGYFEIQGIPTLSINSKEQSAVKKVTDAAKKLMAD-KLARQKERGIRIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D+ + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF--GLNYFKEHY 218
>gi|257869679|ref|ZP_05649332.1| GTP-binding protein [Enterococcus gallinarum EG2]
gi|257803843|gb|EEV32665.1| GTP-binding protein [Enterococcus gallinarum EG2]
Length = 289
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 117/226 (51%), Gaps = 27/226 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R +++++ VDI+ E+ DAR+P SS DQ+ P R++++NK
Sbjct: 6 WFPGHMAKAKREVSEKLKFVDIVFELVDARLPISSRNPMLDQILQQKP-----RLILINK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDAS 139
DLA P Q K W +F +Q + +N+ + +K + + LQ + R
Sbjct: 61 ADLADPQQTKLWEGYFRKQGFLAMAINAQDSQGIKMIVPKAKEVLQEKI--ARDKARGLK 118
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS L N L +G+ + A +PG TK L+ +
Sbjct: 119 PRPIRAMVIGIPNVGKSTLMNRL--VGK---------KIAQTGNKPGVTKGQQWLRFGTE 167
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D E+ KLALTGAI D + ++A + L
Sbjct: 168 --LELLDTPGILWPKFEDPEIGKKLALTGAIKDQLIHLDDIALFGL 211
>gi|354584941|ref|ZP_09003832.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus lactis
154]
gi|353191058|gb|EHB56567.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus lactis
154]
Length = 288
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 124/237 (52%), Gaps = 32/237 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A R I +++ L+D ++E+ DAR+P SS D++ P R++++NK
Sbjct: 5 WFPGHMTKARRQIQEKLKLIDAVIELIDARLPLSSRNPMVDEILQGKP-----RLMLMNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
DLA P ++WI +F +Q P+F V++ VKE + ++ L K D
Sbjct: 60 ADLADPEVTRQWIAYFKEQGQPAFPVDASTGTGVKE----IPGQIKLLLKEKIDKQIAKG 115
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ + V+++GIPNVGKS L N L GR AE G +PG TK +K+
Sbjct: 116 MNPRAMRVLIVGIPNVGKSTLINRLA--GR-NIAETGD--------RPGVTKGQQWIKVT 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+ +LDTPGIL P+ D V +LA+TGAI + + +++A F I FS Y
Sbjct: 165 GG-EMELLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNVEDIA--FFAIKYFSKYY 218
>gi|163914893|ref|NP_001106634.1| mitochondrial GTPase 1 [Xenopus (Silurana) tropicalis]
gi|338818320|sp|A9JTX2.1|MTG1_XENTR RecName: Full=Mitochondrial GTPase 1; Flags: Precursor
gi|160773665|gb|AAI55523.1| LOC100127874 protein [Xenopus (Silurana) tropicalis]
Length = 311
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 126/240 (52%), Gaps = 11/240 (4%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA + + ++ +D I+EV DARIP S ++ +L+LNKMDL
Sbjct: 21 WFPGHMAKGLKQMKTKLKNLDCIVEVHDARIPLSGRNPIFQD--SLGMKPHLLILNKMDL 78
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYDASSDTVTV 145
A TQ K + QQ + KD N+K + + V ++ + +++T +
Sbjct: 79 ADLTQKKRILAQLKQQGVGNVIFTDCVKDQNIKHVVPVISELVGCSQRFHREENTET-CI 137
Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYV 204
M++G+PNVGKS+L N+L ++ KGK + V +PG T+ + + ++++ P I++
Sbjct: 138 MVIGVPNVGKSSLINALRRM----HLRKGK--ASRVGAEPGITRSVLTKIQVSESPLIFL 191
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
DTPG+L P I VE KLAL G I D VG +A Y L ILN +++ + + +
Sbjct: 192 FDTPGVLSPRIESVETGMKLALCGTILDHLVGEDIMADYLLYILNQQMQHRYVEHYGLEK 251
>gi|433446047|ref|ZP_20410178.1| ribosome biogenesis GTP-binding protein YlqF [Anoxybacillus
flavithermus TNO-09.006]
gi|432000792|gb|ELK21684.1| ribosome biogenesis GTP-binding protein YlqF [Anoxybacillus
flavithermus TNO-09.006]
Length = 281
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 121/235 (51%), Gaps = 36/235 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+DI+ E+ DARIP SS D++ + P RI++LNK
Sbjct: 5 WFPGHMAKAKREVTEKLKLIDIVFELVDARIPISSRNPLIDEIVANKP-----RIILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKS 134
D+A P K+WI FF Q + ++S + VK+ + KF + + +++
Sbjct: 60 ADMADPDVTKQWIDFFAAQQIDAIAIDSQSGTGVKQMVAVAKEKLRPKFEKMIAKGIKRP 119
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ +++GIPNVGKS L N L GK A PG TK +
Sbjct: 120 R------AMRALIVGIPNVGKSTLINRLA----------GK-HIAKTGDTPGVTKAQQWI 162
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
K+ + +LDTPGIL P+ D EV KLA TGAI D+ + +++A Y L L+
Sbjct: 163 KVGKE--LELLDTPGILWPKFEDEEVGYKLATTGAIKDTILNLQDVAVYALRFLS 215
>gi|418630372|ref|ZP_13192854.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU128]
gi|374837913|gb|EHS01471.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU128]
Length = 287
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 120/229 (52%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D + P R+++LNK
Sbjct: 5 WYPGHMAKAKRQVSEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK----EFLKFLQAHVRNLRKSDYDAS 139
D+ + + ++W T+F + V++ + N+K E +K Q R+
Sbjct: 60 KDMTNLKELEKWETYFKDEGFYPVAVDAKHGKNLKNVEVEAIKATQEKFD--REKAKGLK 117
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M+LGIPNVGKS L N L + + AE G +PG TK +K+
Sbjct: 118 PRAIRAMILGIPNVGKSTLINKL---AKRSIAETGN--------KPGVTKQQQWIKVGK- 165
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
++ +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L +
Sbjct: 166 -SLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFM 213
>gi|343525032|ref|ZP_08761988.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
constellatus subsp. pharyngis SK1060 = CCUG 46377]
gi|343396904|gb|EGV09440.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
constellatus subsp. pharyngis SK1060 = CCUG 46377]
Length = 283
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 123/242 (50%), Gaps = 19/242 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A KEW +F+ Q + +NS + VK+ + ++ ++ R+ + +T+
Sbjct: 64 ADSDVTKEWRRYFESQGIKTLAINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIETLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPN GKS L N L GK + A +PG TK LK S+ ++ +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA----------GK-KIAVTGNKPGVTKGQQWLK--SNKDLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
LDTPGIL P+ D +V KLALTGAI D + E+A GI F + Y K + Q
Sbjct: 171 LDTPGILWPKFEDEKVALKLALTGAIKDDLLPMDEVA--IFGINYFKEHYPKELRERFKQ 228
Query: 265 IN 266
I+
Sbjct: 229 ID 230
>gi|418634023|ref|ZP_13196421.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU129]
gi|420177366|ref|ZP_14683702.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM057]
gi|420179849|ref|ZP_14686125.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM053]
gi|420189835|ref|ZP_14695794.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM037]
gi|420204167|ref|ZP_14709727.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM015]
gi|374838015|gb|EHS01572.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU129]
gi|394247750|gb|EJD92992.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM057]
gi|394252327|gb|EJD97364.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM053]
gi|394259950|gb|EJE04776.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM037]
gi|394274181|gb|EJE18606.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM015]
Length = 287
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 120/229 (52%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D + P R+++LNK
Sbjct: 5 WYPGHMAKAKRQVSEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK----EFLKFLQAHVRNLRKSDYDAS 139
D+ + + ++W T+F + V++ + N+K E +K Q R+
Sbjct: 60 KDMTNLKELEKWETYFKDEGFYPVAVDAKHGKNLKNVEVEAIKATQEKFD--REKAKGLK 117
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M+LGIPNVGKS L N L + + AE G +PG TK +K+
Sbjct: 118 PRAIRAMILGIPNVGKSTLINKL---AKRSIAETGN--------KPGVTKQQQWIKVGK- 165
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
++ +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L +
Sbjct: 166 -SLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFM 213
>gi|418964799|ref|ZP_13516587.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
constellatus subsp. constellatus SK53]
gi|383344200|gb|EID22369.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
constellatus subsp. constellatus SK53]
Length = 283
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 123/242 (50%), Gaps = 19/242 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L S ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVSDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A KEW +F+ Q + +NS + VK+ + ++ ++ R+ + +T+
Sbjct: 64 ADSDVTKEWRRYFESQGIKTLAINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIETLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPN GKS L N L GK + A +PG TK LK S+ ++ +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA----------GK-KIAVTGNKPGVTKGQQWLK--SNKDLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
LDTPGIL P+ D +V KLALTGAI D + E+ GI F + Y K + Q
Sbjct: 171 LDTPGILWPKFEDEKVALKLALTGAIKDDLLPMDEVT--IFGINYFKEHYPKELRERFKQ 228
Query: 265 IN 266
I+
Sbjct: 229 ID 230
>gi|270290221|ref|ZP_06196446.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
acidilactici 7_4]
gi|270281002|gb|EFA26835.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
acidilactici 7_4]
Length = 287
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 121/232 (52%), Gaps = 21/232 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA A R + +++ LVD++ E+ DARIP SS + + +L+L K DL
Sbjct: 6 WYPGHMAKAIRQVEEKLKLVDVVFELVDARIPVSSRNPMIES--VIKDKPHLLILTKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA---SSDTV 143
A P + + W+ +F + + +NS K LK +A + N + ++++ +
Sbjct: 64 ADPQETQRWLEYFRKNGDHAVALNSKEPSTEKIILKHTRAILAN-KLENWESRGIKKTEI 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M +GIPNVGKS L N H + + + A +PG TK LK S +Y
Sbjct: 123 KSMCIGIPNVGKSTLLN--HLVNK---------KVAITGDRPGVTKKQQWLK--SRQGLY 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYK 255
+LDTPGIL P+ D V SKLA TGAI D+ ++A + L I FS++Y+
Sbjct: 170 LLDTPGILWPKFEDQSVGSKLAFTGAIKDNLYANDDVALFGLQI--FSEKYR 219
>gi|420161425|ref|ZP_14668190.1| GTP-binding protein [Weissella koreensis KCTC 3621]
gi|420161562|ref|ZP_14668326.1| GTP-binding protein [Weissella koreensis KCTC 3621]
gi|394745100|gb|EJF33996.1| GTP-binding protein [Weissella koreensis KCTC 3621]
gi|394745402|gb|EJF34286.1| GTP-binding protein [Weissella koreensis KCTC 3621]
Length = 292
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 115/237 (48%), Gaps = 34/237 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HMA A R + + M VDI+ E+ DARIP SS E D + P R+LV+ K
Sbjct: 7 WYPGHMAKAFRLMRENMKYVDIVFELVDARIPLSSRNPELDDVLGDKP-----RLLVMTK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
DLA P++ KEWIT+F+ + ++S ++ + K R + +D
Sbjct: 62 TDLADPSRTKEWITYFETRGLAVVALDSRDRKTPQTITK----AARKVLAEKWDHLLEKG 117
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ ++ GIPNVGKS L N L A +PG TK + LK
Sbjct: 118 VKDKAIRALVAGIPNVGKSTLLNHLVMKN-----------VAITGDRPGVTKKLQWLKTP 166
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+ N+ +LDTPG+L P+ D V LA+TGAI D + ++A L +L F EY
Sbjct: 167 T--NLELLDTPGVLWPKFDDQRVGQHLAMTGAIKDQLINVDDIA---LEVLKFMREY 218
>gi|414871399|tpg|DAA49956.1| TPA: hypothetical protein ZEAMMB73_838371 [Zea mays]
Length = 237
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 75/115 (65%)
Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVL 205
ML+G+PNVGKSAL NS+H+I K K + ATV P PG T+DI KIA+ P+IYVL
Sbjct: 1 MLVGVPNVGKSALINSIHRIATSRFPAKDKNKRATVGPLPGVTQDIAGYKIATQPSIYVL 60
Query: 206 DTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKF 260
DTPG+L P I D+E KLALTGA+ DS VG + +A+Y L + N W +
Sbjct: 61 DTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLFNIKKTPLHWERL 115
>gi|322389595|ref|ZP_08063144.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis ATCC 903]
gi|321143721|gb|EFX39150.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis ATCC 903]
Length = 286
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 116/222 (52%), Gaps = 19/222 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 9 WFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPML--TKIVGDKPKLMILNKVDL 66
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK+ K L A + R+ + +T+
Sbjct: 67 ADPVATKEWQDYFESQGIKTLAINSKEQSTVKKVTDAAKSLMAD-KIARQKERGIQIETL 125
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 126 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 172
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D EV KLALTGAI D + E+ + L
Sbjct: 173 ILDTPGILWPKFEDEEVALKLALTGAIKDQLLPMDEVTIFGL 214
>gi|344296110|ref|XP_003419752.1| PREDICTED: mitochondrial GTPase 1-like [Loxodonta africana]
Length = 478
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 124/242 (51%), Gaps = 17/242 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA + + + LVD I+EV DARIP S F + P +LVLNK
Sbjct: 176 WFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKP-----HLLVLNK 230
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYDASSDT 142
MDLA + K+ + + + + S KD NVK+ + + + N + + +
Sbjct: 231 MDLADLREQKKILQHLEGEGMKNVIFTSCVKDENVKQIIPTVTELIGNSYRY-HRGENLE 289
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPN 201
VM++GIPNVGKS+L NS+ ++ KGK V QPG T+ + S +++ P
Sbjct: 290 YCVMVIGIPNVGKSSLINSIRRL----HLRKGK--ATRVGGQPGVTRTVMSRIQVCERPL 343
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
+++LDTPG+L P I VE+ KLAL G + D VG + +A Y L LN + +S
Sbjct: 344 VFLLDTPGVLAPRIESVEMGLKLALCGTVLDHLVGEETIADYLLYTLNRQQLFGYVPHYS 403
Query: 262 IN 263
+
Sbjct: 404 LG 405
>gi|424787770|ref|ZP_18214534.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius BA1]
gi|422113524|gb|EKU17262.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius BA1]
Length = 283
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 119/230 (51%), Gaps = 19/230 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+PFSS+ L ++LVLNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPFSSQNPML--TKIVGDKPKLLVLNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A KEW +F+ Q + +NS + VK+ + ++ ++ R+ + +T+
Sbjct: 64 ADAHLTKEWRRYFENQGIKTLAINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIETLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPN GKS L N L A EK A +PG TK LK S+ ++ +
Sbjct: 124 TMIIGIPNAGKSTLMNRL-------AGEK----IAVTGNKPGVTKGQQWLK--SNKDLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
LDTPGIL P+ + ++ KLALTGAI D + E+A GI F + Y
Sbjct: 171 LDTPGILWPKFEEADIALKLALTGAIKDDLLPMDEVA--IFGINYFKEHY 218
>gi|427405689|ref|ZP_18895894.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp.
F0473]
gi|425708530|gb|EKU71569.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp.
F0473]
Length = 302
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 113/215 (52%), Gaps = 19/215 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A R + + + LVD+++E+ DARIP SS LR + R++VLNK DL
Sbjct: 14 WYPGHMRKAERLVKENLKLVDMVVELLDARIPMSSANPVLREI--VAGRPRLVVLNKSDL 71
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDASSDTVT 144
A PT + W+ +F Q+ + V++ +KE ++ +Q A R + + + A
Sbjct: 72 AEPTATRAWVQYFASQDIVAVPVDAVKGRGIKELVQEIQRLAVPRTEKLAKHGAKPRAAR 131
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M+LGIPNVGKS+L N L R V +PG T+ ++I + + +
Sbjct: 132 CMILGIPNVGKSSLINRLSGGAR-----------TKVENRPGVTRAKQWIRIGAQ--LEL 178
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSF--VGG 237
LD PGIL P+ D + +LA TGAI D+ VGG
Sbjct: 179 LDMPGILWPKFEDAQAALRLAFTGAISDTVYDVGG 213
>gi|417896133|ref|ZP_12540100.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21235]
gi|341841034|gb|EGS82506.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21235]
Length = 294
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 143/284 (50%), Gaps = 40/284 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D++ N P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKS 134
D+++ + +W FF + V++ + N+K+ KF + + L+
Sbjct: 60 KDMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPR 119
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ M++GIPNVGKS L N L K A +PG TK +
Sbjct: 120 -------AIRAMIVGIPNVGKSTLINKL-----------AKRSIAQTGNKPGVTKQQQWI 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
K+ + + +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L L +D
Sbjct: 162 KVGNA--LQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLA 219
Query: 255 KKWAKFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQV 298
+ A + I ++++ + D + G + G+I +R N D+ V
Sbjct: 220 RLKAHYKI-EVSEDAEIIAWFD-AIGKKRGLI-RRGNEIDYEAV 260
>gi|339634080|ref|YP_004725721.1| GTP-binding protein YlqF [Weissella koreensis KACC 15510]
gi|338853876|gb|AEJ23042.1| GTP-binding protein YlqF [Weissella koreensis KACC 15510]
Length = 292
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 115/237 (48%), Gaps = 34/237 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HMA A R + + M VDI+ E+ DARIP SS E D + P R+LV+ K
Sbjct: 7 WYPGHMAKAFRLMRENMKYVDIVFELVDARIPLSSRNPELDDVLGDKP-----RLLVMTK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
DLA P++ KEWIT+F+ + ++S ++ + K R + +D
Sbjct: 62 TDLADPSRTKEWITYFETRGLAVVALDSRDRKTPQTITK----AARKVLAEKWDHLLEKG 117
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ ++ GIPNVGKS L N L A +PG TK + LK
Sbjct: 118 VKDKAIRALVAGIPNVGKSTLLNHLVMKN-----------VAITGDRPGVTKKLQWLKTP 166
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+ N+ +LDTPG+L P+ D V LA+TGAI D + ++A L +L F EY
Sbjct: 167 T--NLELLDTPGVLWPKFDDQRVGQHLAMTGAIKDQLINVDDIA---LEVLKFMREY 218
>gi|239636277|ref|ZP_04677279.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
warneri L37603]
gi|239597632|gb|EEQ80127.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
warneri L37603]
Length = 291
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D++ P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVIKQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKF-LQAHVRNL-RKSDYDASSD 141
D+ + + ++W FF+++ V++ + N+K+ K +QA R+
Sbjct: 60 KDITNLKELEKWEQFFEEKGYYPVAVDAKHGKNLKDVEKAAIQATKEKFEREKAKGLRPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS L N L + A+ G +PG TK +K+ +
Sbjct: 120 AIRAMIVGIPNVGKSTLINKL---ANRSVAQTGN--------KPGVTKQQQWIKVGK--S 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L +
Sbjct: 167 LQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLQFM 213
>gi|163941576|ref|YP_001646460.1| ribosomal biogenesis GTPase [Bacillus weihenstephanensis KBAB4]
gi|229168577|ref|ZP_04296300.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH621]
gi|423518528|ref|ZP_17495009.1| ribosome biogenesis GTPase A [Bacillus cereus HuA2-4]
gi|423592166|ref|ZP_17568197.1| ribosome biogenesis GTPase A [Bacillus cereus VD048]
gi|423669412|ref|ZP_17644441.1| ribosome biogenesis GTPase A [Bacillus cereus VDM034]
gi|423674409|ref|ZP_17649348.1| ribosome biogenesis GTPase A [Bacillus cereus VDM062]
gi|163863773|gb|ABY44832.1| GTP-binding protein HSR1-related [Bacillus weihenstephanensis
KBAB4]
gi|228614983|gb|EEK72085.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH621]
gi|401160736|gb|EJQ68111.1| ribosome biogenesis GTPase A [Bacillus cereus HuA2-4]
gi|401232299|gb|EJR38801.1| ribosome biogenesis GTPase A [Bacillus cereus VD048]
gi|401298539|gb|EJS04139.1| ribosome biogenesis GTPase A [Bacillus cereus VDM034]
gi|401309960|gb|EJS15293.1| ribosome biogenesis GTPase A [Bacillus cereus VDM062]
Length = 296
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 125/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +FD++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFDERGQKAISINAQAGQGMKE----IAAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAIYALRFMEKHYPERLK 222
Query: 258 AKFSINQI 265
++++N I
Sbjct: 223 ERYNLNDI 230
>gi|335996549|ref|ZP_08562466.1| GTP-binding protein [Lactobacillus ruminis SPM0211]
gi|335351619|gb|EGM53110.1| GTP-binding protein [Lactobacillus ruminis SPM0211]
Length = 274
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 113/222 (50%), Gaps = 30/222 (13%)
Query: 32 MAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ 91
MA A R + + + VDI+LE+ DAR+P SS QL + + I+VL KMDLA P
Sbjct: 1 MAKALRQVKENLNAVDIVLELVDARLPESSRNPQL--EELLQNKKSIIVLTKMDLADPKL 58
Query: 92 FKEWITFFDQQNCPSFGVNSHN------KDNVKEFL--KFLQAHVRNLRKSDYDASSDTV 143
+EWI +++Q P+ VNS+ + +KE L K R ++ S +
Sbjct: 59 TREWIAYYEQNGHPAIAVNSNQGTLPAIEKKIKEVLKEKIAAKEARGIKNS-------RI 111
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M +GIPNVGKS L N L K A V +PG TK LK S ++
Sbjct: 112 KAMCIGIPNVGKSTLLNRLV-----------KKNVAIVGNKPGVTKAQQWLKAGS--SLL 158
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D V KLALTGA+ D+ ++A Y L
Sbjct: 159 LLDTPGILWPKFEDPIVGKKLALTGAVKDTLYAKDDVALYEL 200
>gi|229134646|ref|ZP_04263455.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-ST196]
gi|228648692|gb|EEL04718.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-ST196]
Length = 296
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 125/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +FD++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFDERGQKAISINAQAGQGMKE----IAAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAIYALRFMEKHYPERLK 222
Query: 258 AKFSINQI 265
++++N I
Sbjct: 223 ERYNLNDI 230
>gi|229013021|ref|ZP_04170186.1| Ras superfamily GTP-binding protein YlqF [Bacillus mycoides DSM
2048]
gi|423489014|ref|ZP_17465696.1| ribosome biogenesis GTPase A [Bacillus cereus BtB2-4]
gi|423494739|ref|ZP_17471383.1| ribosome biogenesis GTPase A [Bacillus cereus CER057]
gi|423498469|ref|ZP_17475086.1| ribosome biogenesis GTPase A [Bacillus cereus CER074]
gi|423511872|ref|ZP_17488403.1| ribosome biogenesis GTPase A [Bacillus cereus HuA2-1]
gi|423598851|ref|ZP_17574851.1| ribosome biogenesis GTPase A [Bacillus cereus VD078]
gi|423661322|ref|ZP_17636491.1| ribosome biogenesis GTPase A [Bacillus cereus VDM022]
gi|228748275|gb|EEL98135.1| Ras superfamily GTP-binding protein YlqF [Bacillus mycoides DSM
2048]
gi|401150832|gb|EJQ58284.1| ribosome biogenesis GTPase A [Bacillus cereus CER057]
gi|401160518|gb|EJQ67896.1| ribosome biogenesis GTPase A [Bacillus cereus CER074]
gi|401237121|gb|EJR43578.1| ribosome biogenesis GTPase A [Bacillus cereus VD078]
gi|401301363|gb|EJS06952.1| ribosome biogenesis GTPase A [Bacillus cereus VDM022]
gi|402432262|gb|EJV64321.1| ribosome biogenesis GTPase A [Bacillus cereus BtB2-4]
gi|402450133|gb|EJV81967.1| ribosome biogenesis GTPase A [Bacillus cereus HuA2-1]
Length = 296
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 125/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +FD++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFDERGQKAISINAQAGQGMKE----IAAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAIYALRFMEKHYPERLK 222
Query: 258 AKFSINQI 265
++++N I
Sbjct: 223 ERYNLNDI 230
>gi|401683098|ref|ZP_10814987.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
AS14]
gi|400183780|gb|EJO18031.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
AS14]
Length = 283
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 121/231 (52%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A + KEW ++F+ Q P+ +NS + VK+ K L A + R+ + +T+
Sbjct: 64 ADSVRIKEWQSYFESQGIPTLSINSKEQSAVKKVTDAAKNLMAD-KLARQKERGIRIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D+ + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF--GLNYFKEHY 218
>gi|157692284|ref|YP_001486746.1| ribosomal biogenesis GTPase [Bacillus pumilus SAFR-032]
gi|338819265|sp|A8FD69.1|RBGA_BACP2 RecName: Full=Ribosome biogenesis GTPase A
gi|157681042|gb|ABV62186.1| GTP-binding protein [Bacillus pumilus SAFR-032]
Length = 282
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 121/241 (50%), Gaps = 33/241 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+DI+ E+ DARIP SS +++ + P +I++LNK
Sbjct: 5 WFPGHMAKARREVTEKLKLIDIVFELTDARIPMSSRNPMIEEILQNKP-----KIMLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
D A P KEW F+QQ S +NS + + + + + + K +D
Sbjct: 60 ADKADPRVTKEWQAHFEQQGVRSLAINSVDGQGLNQII----TTSKEILKEKFDRMKAKG 115
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 VKPRAIRALIIGIPNVGKSTLINRL-----------AKKNIAKTGDRPGITTSQQWVKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYK 255
+ +LDTPGIL P+ D +V +LA+TGAI DS + +++A Y L L N+ + K
Sbjct: 165 KE--MELLDTPGILWPKFEDEKVGLRLAVTGAIKDSIINLQDVAVYGLRFLEENYPERLK 222
Query: 256 K 256
K
Sbjct: 223 K 223
>gi|423483428|ref|ZP_17460118.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6X1-2]
gi|401140979|gb|EJQ48534.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6X1-2]
Length = 296
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 125/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +FD++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFDERGQKAISINAQAGQGMKE----IAAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAIYALRFMEEHYPERLK 222
Query: 258 AKFSINQI 265
++++N I
Sbjct: 223 ERYNLNDI 230
>gi|322385536|ref|ZP_08059180.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
cristatus ATCC 51100]
gi|417921041|ref|ZP_12564536.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
cristatus ATCC 51100]
gi|321270274|gb|EFX53190.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
cristatus ATCC 51100]
gi|342834961|gb|EGU69219.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
cristatus ATCC 51100]
Length = 283
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 126/246 (51%), Gaps = 21/246 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQESIKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A PT KEW +F+ + + +NS + VK E K L A + R+ + +T+
Sbjct: 64 ADPTLTKEWQAYFESRGIKTLAINSKEQSAVKKVTEAAKKLMAD-KLARQRERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAIVGNKPGVTKGQQWLK--SNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSIN 263
+LDTPGIL P+ D V KLALTGAI D+ + E+ + G+ F + Y K +
Sbjct: 170 ILDTPGILWPKFEDEMVALKLALTGAIKDNLLPMDEVTIF--GLNYFKEHYPKALQERFK 227
Query: 264 QINKPL 269
Q++ L
Sbjct: 228 QLDLEL 233
>gi|342215090|ref|ZP_08707755.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp. oral
taxon 780 str. F0422]
gi|341589739|gb|EGS33002.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp. oral
taxon 780 str. F0422]
Length = 297
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 111/224 (49%), Gaps = 17/224 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA ATR I + VD+++E+ DARIP SS +R +++LNK DL
Sbjct: 11 WFPGHMAKATRMITEHKKKVDVVIELLDARIPRSSANPVIREL--IGDKPHVVILNKCDL 68
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSDTVT 144
A+P KEWI FF + + ++S N K+ +K +++ + + R TV
Sbjct: 69 ANPKATKEWIEFFKNEGIHAIAIDSKNGKGNKQLVKTVESLAQPIIDRWLKKGIKGRTVR 128
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M+LGIPNVGKS L N L A K PG T+ +K+ N+ +
Sbjct: 129 TMILGIPNVGKSTLINKLAGSAATRTANK-----------PGHTRGQQWVKVGK--NLEL 175
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
LDTPG+L P+ D ++LA+TGAI D + + L L
Sbjct: 176 LDTPGVLWPKFEDQRAAARLAMTGAISDDVYDLDSVIKQLLAYL 219
>gi|312866577|ref|ZP_07726792.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis F0405]
gi|311097876|gb|EFQ56105.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis F0405]
Length = 283
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 117/231 (50%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPML--TKIVGDKPKLMILNKVDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK+ K L A + R+ + +T+
Sbjct: 64 ADPVATKEWQDYFEAQGIKTLAINSKEQSTVKKVTDAAKSLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK + +
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLKTNKY--LE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D EV KLALTGAI D + E+ G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDEEVALKLALTGAIKDQLLPMDEVT--IFGLNYFKEHY 218
>gi|423367882|ref|ZP_17345314.1| ribosome biogenesis GTPase A [Bacillus cereus VD142]
gi|423452861|ref|ZP_17429714.1| ribosome biogenesis GTPase A [Bacillus cereus BAG5X1-1]
gi|423470052|ref|ZP_17446796.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6O-2]
gi|401082743|gb|EJP91008.1| ribosome biogenesis GTPase A [Bacillus cereus VD142]
gi|401139420|gb|EJQ46982.1| ribosome biogenesis GTPase A [Bacillus cereus BAG5X1-1]
gi|402437304|gb|EJV69328.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6O-2]
Length = 296
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 125/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +FD++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFDERGQKAISINAQAGQGMKE----IAAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAIYALRFMEKHYPERLK 222
Query: 258 AKFSINQI 265
++++N I
Sbjct: 223 ERYNLNDI 230
>gi|377809646|ref|YP_005004867.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
claussenii ATCC BAA-344]
gi|361056387|gb|AEV95191.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
claussenii ATCC BAA-344]
Length = 288
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 121/232 (52%), Gaps = 23/232 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA A R + +++ LVDI+ E+ DARIP SS ++ + +L+L K DL
Sbjct: 6 WYPGHMAKAIRQVQEKLKLVDIVFELVDARIPESSRNPMIQ--EVIENKPHLLLLTKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKD----NVKEFLKFLQAHVRNLRKSDYDASSDT 142
A P + KEW+ ++ Q + ++S ++E K L+ ++N K+D S
Sbjct: 64 ADPVETKEWLKYYRQHGENAIAIDSRETKIEQVIIRETNKILKEKIQN--KADKGIISHE 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M +GIPNVGKS L N H + + + A +PG TK LK S +
Sbjct: 122 IRAMCIGIPNVGKSTLLN--HLLNK---------KVAITGDKPGVTKKQQWLK--SPHGL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D + +KLA TGAI ++ ++A Y L I F ++Y
Sbjct: 169 SLLDTPGILWPKFDDQSIGTKLAFTGAIKENLYANDDVALYGLNI--FRNKY 218
>gi|386586047|ref|YP_006082449.1| GTP1/OBG protein [Streptococcus suis D12]
gi|353738193|gb|AER19201.1| GTP1/OBG protein [Streptococcus suis D12]
Length = 283
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 117/223 (52%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 6 WFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKVDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASSDT 142
A P + KEW ++F+ Q + +NS + VK+ ++ + LR+ +T
Sbjct: 64 ADPVRTKEWQSYFEGQGIRTLAINSKEQSTVKKVTDAAKSLMKEKIERLRER--GIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D EV KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDQEVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|422858458|ref|ZP_16905108.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1057]
gi|327460344|gb|EGF06681.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1057]
Length = 283
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 121/231 (52%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P + KEW ++F+ Q + +NS + VK+ K L A + R+ + +T+
Sbjct: 64 ADPVRIKEWQSYFESQGISTLSINSKEQSAVKKVTDAAKKLMAD-KLARQKERGIRIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D+ + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF--GLNYFKEHY 218
>gi|418166654|ref|ZP_12803310.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17971]
gi|353830250|gb|EHE10380.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17971]
Length = 283
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ N+
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKNLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + GI F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GINYFKEHY 218
>gi|260887867|ref|ZP_05899130.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sputigena
ATCC 35185]
gi|330838732|ref|YP_004413312.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sputigena
ATCC 35185]
gi|260862373|gb|EEX76873.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sputigena
ATCC 35185]
gi|329746496|gb|AEB99852.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sputigena
ATCC 35185]
Length = 302
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 118/240 (49%), Gaps = 17/240 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A + + + LVD+++E+ DARIP +S LR R++ LNK DL
Sbjct: 15 WYPGHMKKARELVEENLKLVDVVVELLDARIPAASSNPMLR--EIIGDKPRVVALNKRDL 72
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFL--QAHVRNLRKSDYDASSDTVT 144
A + W+ F + P+ ++S + +KE L + +A R R ++
Sbjct: 73 ADENMTRRWLEHFRAKKIPAVALDSVSGKGMKELLTLIEREAKYRTERLVSKGVAARKAR 132
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
VM+LGIPNVGKS+L N R+ A K K + +PG T+ ++I + ++ +
Sbjct: 133 VMILGIPNVGKSSLIN------RLAGAAKAK-----TADKPGVTRAKQWIRIGA--DVDL 179
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
LDTPGIL P+ D V KLA TGA+ D + +A L L + + +F +
Sbjct: 180 LDTPGILWPKFEDPRVGLKLAFTGAVNDEIYDLESVAHLLLATLRRDHQERLQERFKFKE 239
>gi|304384965|ref|ZP_07367311.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
acidilactici DSM 20284]
gi|418069181|ref|ZP_12706461.1| GTP-binding protein YlqF [Pediococcus acidilactici MA18/5M]
gi|304329159|gb|EFL96379.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
acidilactici DSM 20284]
gi|357537914|gb|EHJ21937.1| GTP-binding protein YlqF [Pediococcus acidilactici MA18/5M]
Length = 287
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 121/238 (50%), Gaps = 33/238 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA A R + +++ LVD++ E+ DARIP SS + + +L+L K DL
Sbjct: 6 WYPGHMAKAIRQVEEKLKLVDVVFELVDARIPVSSRNPMIES--VIKDKPHLLILTKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV---------RNLRKSDYD 137
A P + + W+ +F + + +NS K LK +A + R ++K++
Sbjct: 64 ADPQETQRWLEYFRKNGDHAVALNSKEPSTEKIILKHTRAILADKLENWESRGIKKTE-- 121
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ M +GIPNVGKS L N H + + + A +PG TK LK
Sbjct: 122 -----IKSMCIGIPNVGKSTLLN--HLVNK---------KVAITGDRPGVTKKQQWLK-- 163
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYK 255
S +Y+LDTPGIL P+ D V SKLA TGAI D+ ++A + L I FS++Y+
Sbjct: 164 SRQGLYLLDTPGILWPKFEDQSVGSKLAFTGAIKDNLYANDDVALFGLQI--FSEKYR 219
>gi|423522332|ref|ZP_17498805.1| ribosome biogenesis GTPase A [Bacillus cereus HuA4-10]
gi|401175026|gb|EJQ82229.1| ribosome biogenesis GTPase A [Bacillus cereus HuA4-10]
Length = 296
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 125/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +FD++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFDERGQKAISINAQAGQGMKE----IAAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAIYALRFMEKHYPERLK 222
Query: 258 AKFSINQI 265
++++N I
Sbjct: 223 ERYNLNDI 230
>gi|229031468|ref|ZP_04187468.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1271]
gi|228729757|gb|EEL80737.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1271]
Length = 296
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 127/248 (51%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASS--- 140
D+A K+WI +F +++ + +N+ +KE + A + L K +D +
Sbjct: 60 ADMADDRLTKQWIAYFKEKDQMAISINAQAGQGMKE----IAAACKVLVKEKFDKMAAKG 115
Query: 141 ---DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLK 222
Query: 258 AKFSINQI 265
++++N+I
Sbjct: 223 ERYNLNEI 230
>gi|229061441|ref|ZP_04198786.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH603]
gi|423558599|ref|ZP_17534901.1| ribosome biogenesis GTPase A [Bacillus cereus MC67]
gi|228717864|gb|EEL69512.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH603]
gi|401191867|gb|EJQ98889.1| ribosome biogenesis GTPase A [Bacillus cereus MC67]
Length = 296
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 124/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +FD++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFDERGQKAISINAQAGQGMKE----IAAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAIYALRFMEKHYPERLK 222
Query: 258 AKFSINQI 265
++ +N I
Sbjct: 223 ERYKLNDI 230
>gi|418568992|ref|ZP_13133332.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21272]
gi|371978177|gb|EHO95427.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21272]
Length = 294
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 122/238 (51%), Gaps = 37/238 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D++ N P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKS 134
D+++ + +W FF + V++ + +N+K+ KF + + L+
Sbjct: 60 KDMSNLNEMSKWEQFFIDKGYYPVSVDAKHGENLKKVEAAAIKATAEKFEREKAKGLKPR 119
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ M++GIPNVGKS L N L K A +PG TK +
Sbjct: 120 -------AIRAMIVGIPNVGKSTLINKL-----------AKRSIAQTGNKPGVTKQQQWI 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSD 252
K+ + + +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L L +D
Sbjct: 162 KVGNA--LQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQND 217
>gi|418325821|ref|ZP_12937024.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU071]
gi|365227567|gb|EHM68760.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU071]
Length = 287
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 120/229 (52%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D + P R+++LNK
Sbjct: 5 WYPGHMAKAKRQVSEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK----EFLKFLQAHVRNLRKSDYDAS 139
D+ + + ++W T+F + V++ + N+K E +K Q R+
Sbjct: 60 KDMTNLKELEKWETYFKDEGFYPVAVDAKHGKNLKNVEVEAIKATQEKFD--REKAKGLK 117
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS L N L + + AE G +PG TK +K+
Sbjct: 118 PRAIRAMIVGIPNVGKSTLINKL---AKRSIAETGN--------KPGVTKQQQWIKVGK- 165
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
++ +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L +
Sbjct: 166 -SLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFM 213
>gi|417676893|ref|ZP_12326303.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17545]
gi|418155144|ref|ZP_12791875.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA16242]
gi|418225544|ref|ZP_12852173.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae NP112]
gi|332075089|gb|EGI85560.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17545]
gi|353823436|gb|EHE03611.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA16242]
gi|353882852|gb|EHE62663.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae NP112]
Length = 283
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 119/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD ++ + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVMILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + GI F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GINYFKEHY 218
>gi|423395861|ref|ZP_17373062.1| ribosome biogenesis GTPase A [Bacillus cereus BAG2X1-1]
gi|423406737|ref|ZP_17383886.1| ribosome biogenesis GTPase A [Bacillus cereus BAG2X1-3]
gi|401653603|gb|EJS71147.1| ribosome biogenesis GTPase A [Bacillus cereus BAG2X1-1]
gi|401660027|gb|EJS77510.1| ribosome biogenesis GTPase A [Bacillus cereus BAG2X1-3]
Length = 296
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 125/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A KEWI +F ++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKEWIAYFKEKGHMAISINAQAGQGMKE----ITAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPARLK 222
Query: 258 AKFSINQI 265
++++N+I
Sbjct: 223 ERYNLNEI 230
>gi|57866703|ref|YP_188393.1| ribosomal biogenesis GTPase [Staphylococcus epidermidis RP62A]
gi|417647399|ref|ZP_12297239.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU144]
gi|418411664|ref|ZP_12984930.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis BVS058A4]
gi|418612108|ref|ZP_13175154.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU117]
gi|418626838|ref|ZP_13189434.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU126]
gi|420163419|ref|ZP_14670166.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM095]
gi|420167601|ref|ZP_14674253.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM087]
gi|420185451|ref|ZP_14691543.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM040]
gi|420211865|ref|ZP_14717221.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM001]
gi|420234404|ref|ZP_14738967.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH051475]
gi|57637361|gb|AAW54149.1| GTP-binding protein, putative [Staphylococcus epidermidis RP62A]
gi|329724320|gb|EGG60832.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU144]
gi|374819990|gb|EHR84104.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU117]
gi|374831382|gb|EHR95124.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU126]
gi|394235108|gb|EJD80682.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM095]
gi|394237629|gb|EJD83115.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM087]
gi|394254437|gb|EJD99406.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM040]
gi|394280375|gb|EJE24656.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM001]
gi|394304207|gb|EJE47614.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH051475]
gi|410891247|gb|EKS39044.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis BVS058A4]
Length = 287
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 120/229 (52%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D + P R+++LNK
Sbjct: 5 WYPGHMAKAKRQVSEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK----EFLKFLQAHVRNLRKSDYDAS 139
D+ + + ++W T+F + V++ + N+K E +K Q R+
Sbjct: 60 KDMTNLKELEKWETYFKDEGFYPVAVDAKHGKNLKNVEVEAIKATQEKFD--REKAKGLK 117
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS L N L + + AE G +PG TK +K+
Sbjct: 118 PRAIRAMIVGIPNVGKSTLINKL---AKRSIAETGN--------KPGVTKQQQWIKVGK- 165
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
++ +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L +
Sbjct: 166 -SLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFM 213
>gi|389856593|ref|YP_006358836.1| GTP1/OBG protein [Streptococcus suis ST1]
gi|353740311|gb|AER21318.1| GTP1/OBG protein [Streptococcus suis ST1]
Length = 283
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 118/223 (52%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 6 WFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKVDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLK----FLQAHVRNLRKSDYDASSDT 142
A P + KEW ++F+ Q + +NS + VK+ + ++ + LR+ +T
Sbjct: 64 ADPVRTKEWQSYFEGQGIRTLAINSKEQATVKKVTEAAKSLMKDKIERLRERGI--QKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D EV KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDQEVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|416124355|ref|ZP_11595351.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
gi|418328014|ref|ZP_12939144.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis 14.1.R1.SE]
gi|319401465|gb|EFV89675.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
gi|365232401|gb|EHM73399.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis 14.1.R1.SE]
Length = 287
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 120/229 (52%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D + P R+++LNK
Sbjct: 5 WYPGHMAKAKRQVSEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK----EFLKFLQAHVRNLRKSDYDAS 139
D+ + + ++W T+F + V++ + N+K E +K Q R+
Sbjct: 60 KDMTNLKELEKWETYFKDEGFYPVAVDAKHGKNLKNVEVEAIKATQEKFD--REKAKGLK 117
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS L N L + + AE G +PG TK +K+
Sbjct: 118 PRAIRAMIVGIPNVGKSTLINKL---AKRSIAETGN--------KPGVTKQQQWIKVGK- 165
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
++ +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L +
Sbjct: 166 -SLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFM 213
>gi|242242527|ref|ZP_04796972.1| GTP-binding protein [Staphylococcus epidermidis W23144]
gi|420174987|ref|ZP_14681433.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM061]
gi|420191708|ref|ZP_14697619.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM023]
gi|242233954|gb|EES36266.1| GTP-binding protein [Staphylococcus epidermidis W23144]
gi|394244520|gb|EJD89862.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM061]
gi|394265859|gb|EJE10506.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM023]
Length = 287
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 120/229 (52%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D + P R+++LNK
Sbjct: 5 WYPGHMAKAKRQVSEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK----EFLKFLQAHVRNLRKSDYDAS 139
D+ + + ++W T+F + V++ + N+K E +K Q R+
Sbjct: 60 KDMTNLKELEKWETYFKDEGFYPVAVDAKHGKNLKNVEVEAIKATQEKFD--REKAKGLK 117
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS L N L + + AE G +PG TK +K+
Sbjct: 118 PRAIRAMIVGIPNVGKSTLINKL---AKRSIAETGN--------KPGVTKQQQWIKVGK- 165
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
++ +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L +
Sbjct: 166 -SLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFM 213
>gi|421236265|ref|ZP_15692864.1| hypothetical protein AMCSP07_001071 [Streptococcus pneumoniae
2071004]
gi|395603232|gb|EJG63372.1| hypothetical protein AMCSP07_001071 [Streptococcus pneumoniae
2071004]
Length = 283
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + VNS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWCQYFESQEIQTLAVNSKEQVTVKVVTDAAKKLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + GI F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GINYFKEHY 218
>gi|417643565|ref|ZP_12293607.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
warneri VCU121]
gi|445059836|ref|YP_007385240.1| GTPase YlqF [Staphylococcus warneri SG1]
gi|330685672|gb|EGG97313.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU121]
gi|443425893|gb|AGC90796.1| GTPase YlqF [Staphylococcus warneri SG1]
Length = 291
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 124/231 (53%), Gaps = 23/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D++ P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVIKQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKF-LQAHVRNL-RKSDYDASSD 141
D+ + + ++W +F+++ V++ + N+K+ K +QA R+
Sbjct: 60 KDMTNLKELEKWEQYFEEKGYYPVAVDAKHGKNLKDVEKAAIQATKEKFDREKAKGLRPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS L N L + A+ G +PG TK +K+ + +
Sbjct: 120 AIRAMIVGIPNVGKSTLINKL---ANRSIAQTGN--------KPGVTKQQQWIKVGT--S 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSD 252
+ +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L + D
Sbjct: 167 LQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLQFMIEKD 217
>gi|403383360|ref|ZP_10925417.1| hypothetical protein KJC30_01635 [Kurthia sp. JC30]
Length = 284
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 118/248 (47%), Gaps = 21/248 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + + + LVDI+ E+ DAR+P SS L + R+L+LNK D+
Sbjct: 5 WFPGHMAKARRQVTENLKLVDIVFELIDARLPMSSRNPMLDD--IIHQKNRLLILNKADM 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLK----FLQAHVRNLRKSDYDASSDT 142
A Q K+WI +F + + VNS + +K K L +RK +
Sbjct: 63 ADEAQTKKWINYFASKGHKAVAVNSLDSKGLKRVTKAAEEVLAEKWERMRKKGLKTRA-- 120
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS + N L K A PG T+ +K+ +
Sbjct: 121 IRAMIVGIPNVGKSTMINRL-----------AKKNVARTGNMPGVTRSQQWIKVGKE--L 167
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262
+LDTPGIL P+ D V KLA+TGAI D + +LA + L L + ++ I
Sbjct: 168 ELLDTPGILWPKFEDQNVGYKLAVTGAIKDQIMNMDDLAIFGLNFLEVYYPERLHERYQI 227
Query: 263 NQINKPLT 270
+ + P+
Sbjct: 228 DGLTDPIV 235
>gi|424780492|ref|ZP_18207365.1| 50S ribosomal subunit maturation GTPase RbgA [Catellicoccus
marimammalium M35/04/3]
gi|422842894|gb|EKU27341.1| 50S ribosomal subunit maturation GTPase RbgA [Catellicoccus
marimammalium M35/04/3]
Length = 285
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 122/242 (50%), Gaps = 27/242 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ LVDI++EV DAR+P SS+ D++ P R+++LNK
Sbjct: 6 WFPGHMAKARREVIEKLKLVDIVIEVVDARLPKSSQNPMLDKIIQQKP-----RLVLLNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDAS 139
DLA P + K+W F+ Q +N+ +K+ K L ++ R+ +
Sbjct: 61 ADLADPEETKKWQAHFEAQGMACLAINAQEGKGIKQITPTCEKVLADKIQ--RRREKGMK 118
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS + N L R A+ G +PG TK LKI
Sbjct: 119 DKAIRAMIIGIPNVGKSTVLNRLI---RKNVAKTGN--------KPGVTKAQQWLKIDK- 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAK 259
+ +LDTPGIL P+ + E KLALTGAI D + ++A + L + W +
Sbjct: 167 -KLELLDTPGILWPKFEEEETGYKLALTGAIKDDLLHFDDIALFGLEFFDRHYHEALWKR 225
Query: 260 FS 261
++
Sbjct: 226 YA 227
>gi|417092810|ref|ZP_11957364.1| GTP1/OBG protein [Streptococcus suis R61]
gi|353532170|gb|EHC01844.1| GTP1/OBG protein [Streptococcus suis R61]
Length = 283
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 117/223 (52%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 6 WFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKVDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLK----FLQAHVRNLRKSDYDASSDT 142
A P + KEW ++F+ Q + +NS + VK+ ++ + LR+ +T
Sbjct: 64 ADPVRTKEWQSYFEGQGIRTLAINSKEQATVKKVTDAAKSLMKEKIERLRQRGI--QKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D EV KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDQEVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|379795610|ref|YP_005325608.1| putative GTPase protein [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356872600|emb|CCE58939.1| putative GTPase protein [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 294
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 141/277 (50%), Gaps = 26/277 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D++ N P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEF-LKFLQAHVRNL-RKSDYDASSD 141
D+++ + +W FF + V++ + N+K+ ++A R+
Sbjct: 60 KDMSNLKEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAMKATAEKFEREKSKGLKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS L N L K A +PG TK +K+ +
Sbjct: 120 AIRAMIVGIPNVGKSTLINKL-----------AKRSIAQTGNKPGVTKQQQWIKVGNA-- 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
+ +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L L +D + A +
Sbjct: 167 LQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDIERLKAHYK 226
Query: 262 INQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQV 298
I ++ + + D + G + G+I +R N D+ V
Sbjct: 227 I-EVPEDAEILAWFD-AIGKKRGLI-RRGNEIDYEAV 260
>gi|408401652|ref|YP_006859615.1| GTP-binding protein [Streptococcus dysgalactiae subsp. equisimilis
RE378]
gi|407967880|dbj|BAM61118.1| GTP-binding protein [Streptococcus dysgalactiae subsp. equisimilis
RE378]
Length = 295
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 120/232 (51%), Gaps = 24/232 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 19 WFPGHMSKARRQVQENVKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 76
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A PT+ KEW +++ Q + +NS + VK E K L A ++ LR D +T
Sbjct: 77 ADPTRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEAAKELMADKIKRLR--DRGIQKET 134
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ +
Sbjct: 135 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKEL 181
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + LN+ EY
Sbjct: 182 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFG---LNYFREY 230
>gi|126654071|ref|ZP_01725897.1| ribosomal biogenesis GTPase [Bacillus sp. B14905]
gi|126589451|gb|EAZ83598.1| ribosomal biogenesis GTPase [Bacillus sp. B14905]
Length = 281
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 114/223 (51%), Gaps = 23/223 (10%)
Query: 32 MAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNKMDLAS 88
MA A R + +++ LVDII E+ DAR+P SS D++ N P R+L+LNK D+A
Sbjct: 1 MAKARREVTEKLKLVDIIFELIDARLPLSSRNPMIDEVINQKP-----RLLILNKADMAD 55
Query: 89 PTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSDTVTVM 146
+ ++W+ +F Q+ + +NS +++ K Q ++ R + M
Sbjct: 56 EQETRKWVDYFAQRGHKAVAINSLEGKGLQQVTKAAQEILKEKFDRMKAKGMKPRAIRAM 115
Query: 147 LLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLD 206
++GIPNVGKS L N L K A PG TK +K+ + +LD
Sbjct: 116 IVGIPNVGKSTLINRL-----------AKKNIAKTGNTPGVTKAQQWIKVGKE--LELLD 162
Query: 207 TPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
TPGIL P+ D EV KLALTGAI D+ ++LA Y L L+
Sbjct: 163 TPGILWPKFEDQEVGFKLALTGAIKDTITNMEDLAVYGLRFLS 205
>gi|357235296|ref|ZP_09122639.1| ribosomal biogenesis GTPase [Streptococcus criceti HS-6]
gi|356883278|gb|EHI73478.1| ribosomal biogenesis GTPase [Streptococcus criceti HS-6]
Length = 283
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 121/232 (52%), Gaps = 23/232 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L + ++LVLNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPML--NKIVGDKPKLLVLNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLK----FLQAHVRNLRKSDYDASSDT 142
A P KEW ++F+ Q + +N+ ++ VK + + + L+K + +T
Sbjct: 64 ADPLLIKEWQSYFENQGLKTLLINAKDQSTVKRLTEAAKSLMADKLERLKKK--GINKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D+ + E+ + G+ F + Y
Sbjct: 169 EILDTPGILWPKFEDQLVGLKLALTGAIKDNLLPMDEVTIF--GLNYFKENY 218
>gi|118479060|ref|YP_896211.1| ribosomal biogenesis GTPase [Bacillus thuringiensis str. Al Hakam]
gi|118418285|gb|ABK86704.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
str. Al Hakam]
Length = 314
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 130/260 (50%), Gaps = 35/260 (13%)
Query: 19 VSQKKGGG----WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHP 71
+ +K+GG W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P
Sbjct: 11 IKEKEGGNMVIQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP 70
Query: 72 FSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL 131
R++VLNK D+A K+WI +F ++ + +N+ +KE + A + L
Sbjct: 71 -----RLVVLNKADMADDRLTKQWIAYFKEKGHMAISINAQAGQGMKE----IAAACKVL 121
Query: 132 RKSDYDA------SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQP 185
K +D + +++GIPNVGKS L N L K A +P
Sbjct: 122 VKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRP 170
Query: 186 GETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
G T +K+ + +LDTPGIL P+ D V +LA TGAI DS + +++A Y L
Sbjct: 171 GVTTAQQWIKVGKE--MELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYAL 228
Query: 246 GILNFSDEYKKWAKFSINQI 265
+ + ++++N I
Sbjct: 229 RFMEKHYPERLKERYNLNDI 248
>gi|432903771|ref|XP_004077219.1| PREDICTED: mitochondrial GTPase 1-like [Oryzias latipes]
Length = 319
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 127/242 (52%), Gaps = 13/242 (5%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA + + + VD I+E+ DARIP S +N ILVLNKMDL
Sbjct: 27 WFPGHMAKGLKQMKASLKSVDCIVEIHDARIPLSGRNPLFQN--TLDVRPHILVLNKMDL 84
Query: 87 ASPTQFKEWITFFDQQNCPS--FGVNSHNKDN-VKEFLKFLQAHVRNLRKSDYDASSDTV 143
A + ++ + ++ + F DN +K+ + + + N + + D + D
Sbjct: 85 ADLSNKQKILKKLERDGVKNVLFTDCLKQADNSIKKLVPTVLEILENKPRFNRDENID-Y 143
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNI 202
+M++G+PNVGKS+L N+L R T +KG R + V +PG TK + + ++++ P +
Sbjct: 144 CMMVIGVPNVGKSSLINAL----RRTNLKKG--RASRVGGEPGITKAVLTKIQVSERPKM 197
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262
Y+LDTPG+LPP+I VE KLAL G I D VG +A Y L LN + K+ +
Sbjct: 198 YLLDTPGVLPPKIESVETGMKLALCGTILDHLVGEDIIADYLLYSLNKLRNFSYVEKYEL 257
Query: 263 NQ 264
+
Sbjct: 258 QE 259
>gi|345859699|ref|ZP_08812033.1| ribosome biogenesis GTPase A [Desulfosporosinus sp. OT]
gi|344327156|gb|EGW38600.1| ribosome biogenesis GTPase A [Desulfosporosinus sp. OT]
Length = 274
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 24/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ VD++LE+ DARIP SS D+L + P RIL+LNK
Sbjct: 5 WFPGHMAKARRLLIEQIRWVDVVLELADARIPISSRNPMLDKLLGNKP-----RILLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV--RNLRKSDYDASSD 141
DLA +W+T + + P+F V++ VK+ + L+ V + +R+++
Sbjct: 60 ADLADTNWTSKWLTQL-RASSPAFAVSATTGTGVKQIVPELERMVLAKQIRQANKGIRPQ 118
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ VM++GIPN+GKS+L N L T + K V +PG T+ ++I H
Sbjct: 119 MIKVMIVGIPNIGKSSLINQL------TGGAQAK-----VGNKPGVTRGNQWVRI--HER 165
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPG+L P+ EV KLA GAI D + +EL+ + +
Sbjct: 166 VELLDTPGMLWPKFEVPEVGQKLAALGAIKDDVLDIEELSLWII 209
>gi|242373536|ref|ZP_04819110.1| possible GTP-binding protein [Staphylococcus epidermidis M23864:W1]
gi|242348899|gb|EES40501.1| possible GTP-binding protein [Staphylococcus epidermidis M23864:W1]
Length = 309
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 121/231 (52%), Gaps = 31/231 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D++ P R+++LNK
Sbjct: 20 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVIKQKP-----RVVILNK 74
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSD-- 141
D+ + + ++W ++F Q V++ + N LK ++A K +D +
Sbjct: 75 KDMTNLKELEKWESYFKDQGFYPVAVDAKHGKN----LKNVEAEAIKATKEKFDREKEKG 130
Query: 142 ----TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ M++GIPNVGKS L N L + A+ G +PG TK +K+
Sbjct: 131 LKPRAIRAMIVGIPNVGKSTLINKL---ANRSIAQTGN--------KPGVTKQQQWIKVG 179
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
++ +LDTPGIL P+ D +V KL+LTGAI DS V E+A Y L +
Sbjct: 180 K--SLQLLDTPGILWPKFEDEKVGKKLSLTGAIKDSIVHLDEVAIYGLNFM 228
>gi|13325182|gb|AAH04409.1| MTG1 protein, partial [Homo sapiens]
Length = 355
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 121/232 (52%), Gaps = 25/232 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA + + + LVD I+EV DARIP S F + P +LVLNK
Sbjct: 51 WFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKP-----HLLVLNK 105
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHV----RNLRKSDYDA 138
MDLA T+ ++ + + + + + KD NVK+ + + + R RK + +
Sbjct: 106 MDLADLTEQQKIMQHLEGEGLKNVIFTNCVKDENVKQIIPMVTELIGRSHRYHRKENLE- 164
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIA 197
+M++G+PNVGKS+L NSL R KGK V +PG T+ + S ++++
Sbjct: 165 ----YCIMVIGVPNVGKSSLINSL----RRQHLRKGK--ATRVGGEPGITRAVMSKIQVS 214
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
P +++LDTPG+L P I VE KLAL G + D VG + +A Y L LN
Sbjct: 215 ERPLMFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 266
>gi|239826597|ref|YP_002949221.1| ribosomal biogenesis GTPase [Geobacillus sp. WCH70]
gi|338819267|sp|C5D8U8.1|RBGA_GEOSW RecName: Full=Ribosome biogenesis GTPase A
gi|239806890|gb|ACS23955.1| GTP-binding protein HSR1-related [Geobacillus sp. WCH70]
Length = 283
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 127/248 (51%), Gaps = 30/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ L+DI+ E+ DARIP SS + H + RI++LNK D+
Sbjct: 7 WFPGHMAKAKREVQEKLKLIDIVFELLDARIPLSSRNPMI--HEILGNKPRIVLLNKADM 64
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKSDYD 137
A T ++WI +F++Q + +++ +++ + KF + + ++
Sbjct: 65 ADETVTEQWIAYFERQQLHALAIDAQTGTGIRQIVSAAKEMLKDKFAKMAAKGIK----- 119
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ + +++GIPNVGKS L N L GR A +PG TK +K+
Sbjct: 120 -NPRPMRALIVGIPNVGKSTLINRLA--GR---------NIAKTGDKPGVTKAQQWIKVG 167
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D EV KLA TGAI D+ + +++A Y L L +
Sbjct: 168 KE--MELLDTPGILWPKFEDEEVGLKLATTGAIKDTILNLQDVAVYALNFLKQHYPERLK 225
Query: 258 AKFSINQI 265
++S++ I
Sbjct: 226 ERYSLDDI 233
>gi|423068503|ref|ZP_17057291.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius F0395]
gi|355366758|gb|EHG14475.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius F0395]
Length = 283
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 122/242 (50%), Gaps = 19/242 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A KEW +F+ Q + +NS + VK+ + ++ ++ R+ + +T+
Sbjct: 64 ADSDVTKEWRRYFESQGIKTLAINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIETLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPN GKS L N L GK + A +PG TK LK S+ ++ +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA----------GK-KIAVTGNKPGVTKGQQWLK--SNKDLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
LDTPGIL P+ D +V KLALTGAI D + E+ GI F + Y K + Q
Sbjct: 171 LDTPGILWPKFEDEKVALKLALTGAIKDDLLPMDEVT--IFGINYFKEHYPKELRERFKQ 228
Query: 265 IN 266
I+
Sbjct: 229 ID 230
>gi|425736836|ref|ZP_18855112.1| GTPase YlqF [Staphylococcus massiliensis S46]
gi|425483308|gb|EKU50460.1| GTPase YlqF [Staphylococcus massiliensis S46]
Length = 288
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 120/230 (52%), Gaps = 29/230 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D H P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDDFIQHKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV-----RNLRKSDYDA 138
MD+++ + ++W TFF+ + V++ + N++ K QA + + R+ +
Sbjct: 60 MDMSNLKEMEKWNTFFEDKGAFPVAVDAKHGKNLQ---KVEQAAIEATKEKFAREKEKGL 116
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
+ M++GIPNVGKS L N + K A PG TK +K+ +
Sbjct: 117 RPRAIRAMIVGIPNVGKSTLINKM-----------AKRAIAKTGNTPGVTKQQQWIKVGN 165
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P+ D + KL++TGAI DS V ++A Y L L
Sbjct: 166 A--LQLLDTPGILWPKFEDQTIGKKLSITGAIKDSIVHLDDVAIYGLNFL 213
>gi|354505914|ref|XP_003515012.1| PREDICTED: mitochondrial GTPase 1-like [Cricetulus griseus]
Length = 327
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 120/228 (52%), Gaps = 17/228 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFS---SEFDQLRNHHPFSSSRRILVLNK 83
W+ HMA + + + LVD ++EV DARIP S S F +L P +LVLNK
Sbjct: 29 WFPGHMAKGLKKMQSSLKLVDCVIEVHDARIPLSGRNSLFQELLGLKP-----HLLVLNK 83
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYDASSDT 142
MDLA T+ ++ + + + + + KD N+K+ + L ++ + + A +
Sbjct: 84 MDLADLTEQQKIVQHLEGKGLKNVIFTNCVKDENIKQIIPKLMELIKYSYRYN-RAENME 142
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPN 201
VM++G+PNVGKS+L NSL R GK V +PG T+ + S +++ P
Sbjct: 143 YCVMVIGVPNVGKSSLINSL----RRQHLRTGK--ATRVGGEPGITRAVTSRIQVCERPL 196
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
++LDTPG+L P I VE KLAL G + D VG + +A Y L LN
Sbjct: 197 TFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 244
>gi|223933032|ref|ZP_03625026.1| GTP1/OBG protein [Streptococcus suis 89/1591]
gi|302023801|ref|ZP_07249012.1| ribosomal biogenesis GTPase [Streptococcus suis 05HAS68]
gi|330832828|ref|YP_004401653.1| GTP1/OBG protein [Streptococcus suis ST3]
gi|223898349|gb|EEF64716.1| GTP1/OBG protein [Streptococcus suis 89/1591]
gi|329307051|gb|AEB81467.1| GTP1/OBG protein [Streptococcus suis ST3]
Length = 283
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 117/223 (52%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 6 WFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKVDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLK----FLQAHVRNLRKSDYDASSDT 142
A P + KEW ++F+ Q + +NS + VK+ ++ + LR+ +T
Sbjct: 64 ADPVRTKEWQSYFEGQGIRTLAINSKEQATVKKVTDAAKSLMKDKIERLRERGI--QKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D EV KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDQEVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|282916493|ref|ZP_06324255.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus D139]
gi|282319933|gb|EFB50281.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus D139]
Length = 294
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 142/284 (50%), Gaps = 40/284 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D++ N P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKS 134
D+++ + +W FF + V++ + N+K+ KF + + L+
Sbjct: 60 KDMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPR 119
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ M++GIPNVGKS L N L K A +PG TK +
Sbjct: 120 -------AIRAMIVGIPNVGKSTLINKL-----------AKRSIAQTGNKPGVTKQQQWI 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
K+ + + +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L L +D
Sbjct: 162 KVGNA--LQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAVYGLNFLIQNDLA 219
Query: 255 KKWAKFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQV 298
+ A + I ++ + + D + G + G+I +R N D+ V
Sbjct: 220 RLKAHYKI-EVPEDAEIIAWFD-AIGKKRGLI-RRGNEIDYEAV 260
>gi|418189390|ref|ZP_12825905.1| hypothetical protein SPAR94_1149 [Streptococcus pneumoniae GA47373]
gi|419495334|ref|ZP_14035052.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47461]
gi|421303334|ref|ZP_15753998.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA17484]
gi|353856532|gb|EHE36501.1| hypothetical protein SPAR94_1149 [Streptococcus pneumoniae GA47373]
gi|379595416|gb|EHZ60224.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47461]
gi|395901956|gb|EJH12892.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA17484]
Length = 283
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWCQYFESQEIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + GI F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GINYFKEHY 218
>gi|350593186|ref|XP_001927683.3| PREDICTED: mitochondrial GTPase 1 isoform 1 [Sus scrofa]
Length = 332
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 120/228 (52%), Gaps = 17/228 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA R + + LVD ILEV DARIP S F + P +LVLNK
Sbjct: 30 WFPGHMAKGLRKMQSSLKLVDCILEVHDARIPLSGRNPLFQETLGLKP-----HLLVLNK 84
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYDASSDT 142
MDLA + ++ + +++ + + KD N+K+ + + V + + + S
Sbjct: 85 MDLADLKEQQKIMQHLEREGLKNVIFTNCVKDENIKQIIPKVTELVGSSCRY-HRGESVE 143
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPN 201
+M++G+PNVGKS+L N+L R KGK V +PG T+ + S +++ P
Sbjct: 144 YCIMVIGVPNVGKSSLINAL----RRQHLRKGK--ATKVGGEPGITRAVMSRVQVCERPL 197
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+++LDTPG+L P I +VE KLAL G + D VG + LA Y L LN
Sbjct: 198 MFLLDTPGVLAPRIQNVETGLKLALCGTVLDHLVGEETLADYLLYTLN 245
>gi|15924233|ref|NP_371767.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
Mu50]
gi|15926826|ref|NP_374359.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
N315]
gi|148267734|ref|YP_001246677.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
JH9]
gi|150393792|ref|YP_001316467.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
JH1]
gi|156979564|ref|YP_001441823.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
Mu3]
gi|253315601|ref|ZP_04838814.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
str. CF-Marseille]
gi|255006030|ref|ZP_05144631.2| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257795701|ref|ZP_05644680.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9781]
gi|258415925|ref|ZP_05682195.1| ribosomal biogenesis GTPase [Staphylococcus aureus A9763]
gi|258421687|ref|ZP_05684611.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9719]
gi|258434843|ref|ZP_05688917.1| ribosomal biogenesis GTPase [Staphylococcus aureus A9299]
gi|258444581|ref|ZP_05692910.1| ribosomal biogenesis GTPase [Staphylococcus aureus A8115]
gi|258447586|ref|ZP_05695730.1| ribosomal biogenesis GTPase [Staphylococcus aureus A6300]
gi|258449428|ref|ZP_05697531.1| ribosomal biogenesis GTPase [Staphylococcus aureus A6224]
gi|258454807|ref|ZP_05702771.1| ribosomal biogenesis GTPase [Staphylococcus aureus A5937]
gi|282892731|ref|ZP_06300966.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A8117]
gi|282927585|ref|ZP_06335201.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A10102]
gi|295406178|ref|ZP_06815985.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A8819]
gi|297244406|ref|ZP_06928289.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A8796]
gi|384864470|ref|YP_005749829.1| hypothetical protein ECTR2_1099 [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|387150386|ref|YP_005741950.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus aureus
04-02981]
gi|415691093|ref|ZP_11453332.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
CGS03]
gi|417650895|ref|ZP_12300658.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21172]
gi|417802680|ref|ZP_12449737.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21318]
gi|417892142|ref|ZP_12536196.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21201]
gi|418424383|ref|ZP_12997505.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS1]
gi|418427378|ref|ZP_13000390.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS2]
gi|418430219|ref|ZP_13003135.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS3a]
gi|418433184|ref|ZP_13005961.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS4]
gi|418436855|ref|ZP_13008657.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS5]
gi|418439727|ref|ZP_13011434.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS6]
gi|418442779|ref|ZP_13014381.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS7]
gi|418445838|ref|ZP_13017314.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS8]
gi|418448782|ref|ZP_13020174.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS9]
gi|418451606|ref|ZP_13022940.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS10]
gi|418454662|ref|ZP_13025924.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS11a]
gi|418457538|ref|ZP_13028741.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS11b]
gi|418638136|ref|ZP_13200439.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-3]
gi|418654623|ref|ZP_13216519.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-99]
gi|418661562|ref|ZP_13223147.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-122]
gi|418878092|ref|ZP_13432327.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1165]
gi|418880920|ref|ZP_13435139.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1213]
gi|418883849|ref|ZP_13438044.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1769]
gi|418894942|ref|ZP_13449037.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1057]
gi|418914341|ref|ZP_13468313.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|418920320|ref|ZP_13474253.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC348]
gi|418931313|ref|ZP_13485154.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1750]
gi|418991105|ref|ZP_13538766.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1096]
gi|419785002|ref|ZP_14310760.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-M]
gi|424768073|ref|ZP_18195366.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CM05]
gi|443636965|ref|ZP_21121058.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21236]
gi|13701043|dbj|BAB42338.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247013|dbj|BAB57405.1| similar to GTP-binding protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|147740803|gb|ABQ49101.1| Ras superfamily GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus JH9]
gi|149946244|gb|ABR52180.1| GTP-binding protein HSR1-related [Staphylococcus aureus subsp.
aureus JH1]
gi|156721699|dbj|BAF78116.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|257789673|gb|EEV28013.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9781]
gi|257839261|gb|EEV63735.1| ribosomal biogenesis GTPase [Staphylococcus aureus A9763]
gi|257842373|gb|EEV66798.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9719]
gi|257849204|gb|EEV73186.1| ribosomal biogenesis GTPase [Staphylococcus aureus A9299]
gi|257850074|gb|EEV74027.1| ribosomal biogenesis GTPase [Staphylococcus aureus A8115]
gi|257853777|gb|EEV76736.1| ribosomal biogenesis GTPase [Staphylococcus aureus A6300]
gi|257857416|gb|EEV80314.1| ribosomal biogenesis GTPase [Staphylococcus aureus A6224]
gi|257863190|gb|EEV85954.1| ribosomal biogenesis GTPase [Staphylococcus aureus A5937]
gi|282590588|gb|EFB95665.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A10102]
gi|282764728|gb|EFC04853.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A8117]
gi|285816925|gb|ADC37412.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus aureus
04-02981]
gi|294968766|gb|EFG44788.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A8819]
gi|297178436|gb|EFH37682.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A8796]
gi|312829637|emb|CBX34479.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315131037|gb|EFT87021.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
CGS03]
gi|329727079|gb|EGG63535.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21172]
gi|334274316|gb|EGL92638.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21318]
gi|341858109|gb|EGS98910.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21201]
gi|375014448|gb|EHS08129.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-99]
gi|375023360|gb|EHS16823.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-3]
gi|375038744|gb|EHS31705.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-122]
gi|377694214|gb|EHT18579.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1165]
gi|377694748|gb|EHT19112.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1057]
gi|377714595|gb|EHT38794.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1750]
gi|377714936|gb|EHT39134.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1769]
gi|377723227|gb|EHT47352.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1096]
gi|377731813|gb|EHT55866.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1213]
gi|377757843|gb|EHT81731.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|377765679|gb|EHT89528.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC348]
gi|383363603|gb|EID40935.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-M]
gi|387718614|gb|EIK06572.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS3a]
gi|387718965|gb|EIK06921.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS2]
gi|387720290|gb|EIK08202.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS1]
gi|387725624|gb|EIK13228.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS4]
gi|387727959|gb|EIK15459.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS5]
gi|387730689|gb|EIK18050.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS6]
gi|387735766|gb|EIK22876.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS8]
gi|387737444|gb|EIK24510.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS7]
gi|387737998|gb|EIK25052.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS9]
gi|387744487|gb|EIK31251.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS10]
gi|387745777|gb|EIK32527.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS11a]
gi|387747270|gb|EIK33979.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS11b]
gi|402348710|gb|EJU83689.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CM05]
gi|408423435|emb|CCJ10846.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408425425|emb|CCJ12812.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408427413|emb|CCJ14776.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408429400|emb|CCJ26565.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408431388|emb|CCJ18703.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408433382|emb|CCJ20667.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408435373|emb|CCJ22633.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408437358|emb|CCJ24601.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|443406942|gb|ELS65512.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21236]
Length = 294
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 122/238 (51%), Gaps = 37/238 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D++ N P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKS 134
D+++ + +W FF + V++ + N+K+ KF + + L+
Sbjct: 60 KDMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPR 119
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ M++GIPNVGKS L N L K A +PG TK +
Sbjct: 120 -------AIRAMIVGIPNVGKSTLINKL-----------AKRSIAQTGNKPGVTKQQQWI 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSD 252
K+++ + +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L L +D
Sbjct: 162 KVSNA--LQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQND 217
>gi|146318651|ref|YP_001198363.1| ribosomal biogenesis GTPase [Streptococcus suis 05ZYH33]
gi|146320857|ref|YP_001200568.1| ribosomal biogenesis GTPase [Streptococcus suis 98HAH33]
gi|253751770|ref|YP_003024911.1| ribosomal biogenesis GTPase [Streptococcus suis SC84]
gi|253753594|ref|YP_003026735.1| ribosomal biogenesis GTPase [Streptococcus suis P1/7]
gi|253755525|ref|YP_003028665.1| ribosomal biogenesis GTPase [Streptococcus suis BM407]
gi|386577875|ref|YP_006074281.1| GTP-binding protein [Streptococcus suis GZ1]
gi|386579927|ref|YP_006076332.1| ribosomal biogenesis GTPase [Streptococcus suis JS14]
gi|386581951|ref|YP_006078355.1| ribosomal biogenesis GTPase [Streptococcus suis SS12]
gi|403061512|ref|YP_006649728.1| GTPase YlqF [Streptococcus suis S735]
gi|145689457|gb|ABP89963.1| Predicted GTPase [Streptococcus suis 05ZYH33]
gi|145691663|gb|ABP92168.1| Predicted GTPase [Streptococcus suis 98HAH33]
gi|251816059|emb|CAZ51679.1| putative GTPase protein [Streptococcus suis SC84]
gi|251817989|emb|CAZ55771.1| putative GTPase protein [Streptococcus suis BM407]
gi|251819840|emb|CAR45821.1| putative GTPase protein [Streptococcus suis P1/7]
gi|292558338|gb|ADE31339.1| GTP-binding protein [Streptococcus suis GZ1]
gi|319758119|gb|ADV70061.1| ribosomal biogenesis GTPase [Streptococcus suis JS14]
gi|353734097|gb|AER15107.1| ribosomal biogenesis GTPase [Streptococcus suis SS12]
gi|402808838|gb|AFR00330.1| GTPase YlqF [Streptococcus suis S735]
Length = 283
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 117/223 (52%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 6 WFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKVDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLK----FLQAHVRNLRKSDYDASSDT 142
A P + KEW ++F+ Q + +NS + VK+ ++ + LR+ +T
Sbjct: 64 ADPVRTKEWQSYFEGQGIRTLAINSKEQATVKKVTDAAKGLMKDKIERLRERGI--QKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D EV KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDQEVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|386584145|ref|YP_006080548.1| GTP1/OBG protein [Streptococcus suis D9]
gi|353736291|gb|AER17300.1| GTP1/OBG protein [Streptococcus suis D9]
Length = 283
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 117/223 (52%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 6 WFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKVDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLK----FLQAHVRNLRKSDYDASSDT 142
A P + KEW ++F+ Q + +NS + VK+ ++ + LR+ +T
Sbjct: 64 ADPVRTKEWQSYFEGQGIRTLAINSKEQATVKKVTDAAKSLMKDKIERLRERGI--QKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D EV KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDQEVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|253731862|ref|ZP_04866027.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253724272|gb|EES93001.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
Length = 294
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 142/284 (50%), Gaps = 40/284 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D++ N P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKS 134
D+++ + +W FF + V++ + N+K+ KF + + L+
Sbjct: 60 KDMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPR 119
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ M++GIPNVGKS L N L K A +PG TK +
Sbjct: 120 -------AIRAMIVGIPNVGKSTLINKL-----------AKRSIAQTGNKPGVTKQQQWI 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
K+ + + +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L L +D
Sbjct: 162 KVGNA--LQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLA 219
Query: 255 KKWAKFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQV 298
+ A + I ++ + + D + G + G+I +R N D+ V
Sbjct: 220 RLKAHYKI-EVPEDAEILAWFD-AIGKKRGLI-RRGNEIDYEAV 260
>gi|418646168|ref|ZP_13208283.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-55]
gi|375021634|gb|EHS15130.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-55]
Length = 294
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 121/238 (50%), Gaps = 37/238 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D++ N P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKS 134
D+++ + +W FF + V++ + N+K+ KF + + L+
Sbjct: 60 KDMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPR 119
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ M++GIPNVGKS L N L K A +PG TK +
Sbjct: 120 -------AIRAMIVGIPNVGKSTLINKL-----------AKRSIAQTGNKPGVTKQQQWI 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSD 252
K+ + + +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L L +D
Sbjct: 162 KVGN--TLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQND 217
>gi|423582048|ref|ZP_17558159.1| ribosome biogenesis GTPase A [Bacillus cereus VD014]
gi|401212927|gb|EJR19668.1| ribosome biogenesis GTPase A [Bacillus cereus VD014]
Length = 296
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 125/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +F ++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFKEKGHMAISINAQAGQGIKE----IAAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLK 222
Query: 258 AKFSINQI 265
++++N+I
Sbjct: 223 ERYNLNEI 230
>gi|320529142|ref|ZP_08030234.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas artemidis
F0399]
gi|320138772|gb|EFW30662.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas artemidis
F0399]
Length = 310
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 110/215 (51%), Gaps = 19/215 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A R + + + LVD+++E+ DARIP SS LR + R++VLNK DL
Sbjct: 21 WYPGHMRKAERLVQENLKLVDVVVELLDARIPMSSANPVLREI--VAGKPRLVVLNKSDL 78
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDASSDTVT 144
A P + W+ +F Q+ + V++ KE ++ +Q A R + + + A
Sbjct: 79 AEPAATRAWVQYFASQDIVAVPVDAVKGAGTKELVQAIQKLAAPRTEKLAKHGAKPRAAR 138
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M+LGIPNVGKS+L N L R V +PG T+ ++I + + +
Sbjct: 139 CMILGIPNVGKSSLINRLSGDAR-----------TKVENRPGVTRAKQWIRIGAQ--LEL 185
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSF--VGG 237
LD PGIL P+ D +LA TGAI D+ VGG
Sbjct: 186 LDMPGILWPKFEDARAALRLAFTGAISDTVYDVGG 220
>gi|282918942|ref|ZP_06326677.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus C427]
gi|282316752|gb|EFB47126.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus C427]
Length = 294
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 142/284 (50%), Gaps = 40/284 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D++ N P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKS 134
D+++ + +W FF + V++ + N+K+ KF + + L+
Sbjct: 60 KDMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPR 119
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ M++GIPNVGKS L N L K A +PG TK +
Sbjct: 120 -------AIRAMIVGIPNVGKSTLINKL-----------AKRSIAQTGNKPGVTKQQQWI 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
K+ + + +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L L +D
Sbjct: 162 KVGNA--LQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLA 219
Query: 255 KKWAKFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQV 298
+ A + I ++ + + D + G + G+I +R N D+ V
Sbjct: 220 RLKAHYKI-EVPEDAEIIAWFD-AIGKKRGLI-RRGNEIDYEAV 260
>gi|384550000|ref|YP_005739252.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302332849|gb|ADL23042.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
JKD6159]
Length = 294
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 142/280 (50%), Gaps = 32/280 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D++ N P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL-----RKSDYDA 138
D+++ + +W FF + V++ + N+K K A +++ R+
Sbjct: 60 KDMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLK---KVEAAAIKSTAEKFEREKAKGL 116
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
+ M++GIPNVGKS L N L K A +PG TK +K+ +
Sbjct: 117 KPRAIRAMIVGIPNVGKSTLINKL-----------AKRSIAQTGNKPGVTKQQQWIKVGN 165
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWA 258
+ +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L L +D + A
Sbjct: 166 A--LQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKA 223
Query: 259 KFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQV 298
+ I ++ + + D + G + G+I +R N D+ V
Sbjct: 224 HYKI-EVPEDAEIIAWFD-AIGKKRGLI-RRGNEIDYEAV 260
>gi|45708796|gb|AAH26039.1| Mitochondrial GTPase 1 homolog (S. cerevisiae) [Homo sapiens]
gi|190689305|gb|ACE86427.1| mitochondrial GTPase 1 homolog (S. cerevisiae) protein [synthetic
construct]
gi|190690655|gb|ACE87102.1| mitochondrial GTPase 1 homolog (S. cerevisiae) protein [synthetic
construct]
Length = 334
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 121/232 (52%), Gaps = 25/232 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA + + + LVD I+EV DARIP S F + P +LVLNK
Sbjct: 30 WFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKP-----HLLVLNK 84
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHV----RNLRKSDYDA 138
MDLA T+ ++ + + + + + KD NVK+ + + + R RK + +
Sbjct: 85 MDLADLTEQQKIMQHLEGEGLKNVIFTNCVKDENVKQIIPMVTELIGRSHRYHRKENLE- 143
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIA 197
+M++G+PNVGKS+L NSL R KGK V +PG T+ + S ++++
Sbjct: 144 ----YCIMVIGVPNVGKSSLINSL----RRQHLRKGK--ATRVGGEPGITRAVMSKIQVS 193
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
P +++LDTPG+L P I VE KLAL G + D VG + +A Y L LN
Sbjct: 194 ERPLMFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 245
>gi|306820819|ref|ZP_07454443.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|402310424|ref|ZP_10829390.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium sp. AS15]
gi|304551137|gb|EFM39104.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|400368876|gb|EJP21883.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium sp. AS15]
Length = 286
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 120/237 (50%), Gaps = 29/237 (12%)
Query: 19 VSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRI 78
+++K WY HM I + LVD+++E+ DAR P S++ + N S+ ++I
Sbjct: 3 ITEKNSINWYPGHMKKTREGIVKNLKLVDLVIEILDARAPISTKNPDIDNM--ISNKKKI 60
Query: 79 LVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA 138
+V K DL K++I ++ N +N+ +K +K L N+R+ +Y+
Sbjct: 61 IVFTKKDLTPEDSLKKFIDYYKNNNDYVIAINATDKAGTSSLIKLLD----NIREENYNK 116
Query: 139 SSD------TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY 192
+ + + +M++GIPNVGKS L N + IG+ + A PG TK
Sbjct: 117 NKNKGIINKNLRIMIVGIPNVGKSTLINQI--IGK---------KSAKTGDTPGITKAQQ 165
Query: 193 SLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGK----ELAQYFL 245
LKI NI +LDTPGIL P+I DV V +KL+ G+I DS + + E QY L
Sbjct: 166 WLKIKG--NIELLDTPGILWPKIEDVSVGNKLSFLGSIKDSVLEIEDIYYEFIQYLL 220
>gi|332835419|ref|XP_003312882.1| PREDICTED: mitochondrial GTPase 1 isoform 1 [Pan troglodytes]
gi|397490621|ref|XP_003816297.1| PREDICTED: mitochondrial GTPase 1 isoform 1 [Pan paniscus]
gi|410226204|gb|JAA10321.1| mitochondrial GTPase 1 homolog [Pan troglodytes]
gi|410255200|gb|JAA15567.1| mitochondrial GTPase 1 homolog [Pan troglodytes]
gi|410288914|gb|JAA23057.1| mitochondrial GTPase 1 homolog [Pan troglodytes]
gi|410351341|gb|JAA42274.1| mitochondrial GTPase 1 homolog [Pan troglodytes]
Length = 334
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 119/229 (51%), Gaps = 19/229 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA + + + LVD I+EV DARIP S F + P +LVLNK
Sbjct: 30 WFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKP-----HLLVLNK 84
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYDASSDT 142
MDLA T+ ++ + + + + + KD NVK+ L + + R Y +
Sbjct: 85 MDLADLTEQQKIMQHLEGEGLKNVIFTNCVKDENVKQILPMVTELIG--RSHRYHRRENL 142
Query: 143 -VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHP 200
+M++G+PNVGKS+L NSL R KGK V +PG T+ + S ++++ P
Sbjct: 143 EYCIMVIGVPNVGKSSLINSL----RRQHLRKGK--ATRVGGEPGITRAVMSKIQVSERP 196
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+++LDTPG+L P I VE KLAL G + D VG + +A Y L LN
Sbjct: 197 LMFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 245
>gi|93277113|ref|NP_612393.2| mitochondrial GTPase 1 [Homo sapiens]
gi|134034174|sp|Q9BT17.2|MTG1_HUMAN RecName: Full=Mitochondrial GTPase 1; AltName: Full=GTP-binding
protein 7; Flags: Precursor
Length = 334
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 121/232 (52%), Gaps = 25/232 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA + + + LVD I+EV DARIP S F + P +LVLNK
Sbjct: 30 WFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKP-----HLLVLNK 84
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHV----RNLRKSDYDA 138
MDLA T+ ++ + + + + + KD NVK+ + + + R RK + +
Sbjct: 85 MDLADLTEQQKIMQHLEGEGLKNVIFTNCVKDENVKQIIPMVTELIGRSHRYHRKENLE- 143
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIA 197
+M++G+PNVGKS+L NSL R KGK V +PG T+ + S ++++
Sbjct: 144 ----YCIMVIGVPNVGKSSLINSL----RRQHLRKGK--ATRVGGEPGITRAVMSKIQVS 193
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
P +++LDTPG+L P I VE KLAL G + D VG + +A Y L LN
Sbjct: 194 ERPLMFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 245
>gi|418962640|ref|ZP_13514494.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
anginosus subsp. whileyi CCUG 39159]
gi|383345175|gb|EID23308.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
anginosus subsp. whileyi CCUG 39159]
Length = 283
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 122/242 (50%), Gaps = 19/242 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGEKPKLLILNKGDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A KEW +F+ Q + +NS + VK+ + ++ ++ R+ + +T+
Sbjct: 64 ADSDLTKEWRRYFESQGIKTLAINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIETLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPN GKS L N L GK + A +PG TK LK S+ N+ +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA----------GK-KIAVTGNKPGVTKGQQWLK--SNRNLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
LDTPGIL P+ D +V KLALTGAI D + E+ GI F + Y K + Q
Sbjct: 171 LDTPGILWPKFEDEKVALKLALTGAIKDDLLPMDEVT--IFGINYFKEHYPKELQERFKQ 228
Query: 265 IN 266
++
Sbjct: 229 MD 230
>gi|319939094|ref|ZP_08013458.1| GTP-binding protein [Streptococcus anginosus 1_2_62CV]
gi|319812144|gb|EFW08410.1| GTP-binding protein [Streptococcus anginosus 1_2_62CV]
Length = 283
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 122/242 (50%), Gaps = 19/242 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPML--TKIVGEKPKLLILNKGDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A KEW +F+ Q + +NS + VK+ + ++ ++ R+ + +T+
Sbjct: 64 ADSDLTKEWRKYFESQGIKTLAINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIETLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPN GKS L N L GK + A +PG TK LK S+ N+ +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA----------GK-KIAVTGNKPGVTKGQQWLK--SNRNLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
LDTPGIL P+ D +V KLALTGAI D + E+ GI F + Y K + Q
Sbjct: 171 LDTPGILWPKFEDEKVALKLALTGAIKDDLLPMDEVT--IFGINYFKEHYPKELQERFKQ 228
Query: 265 IN 266
++
Sbjct: 229 MD 230
>gi|49483406|ref|YP_040630.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257425297|ref|ZP_05601722.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257427957|ref|ZP_05604355.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257430590|ref|ZP_05606972.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
68-397]
gi|257433351|ref|ZP_05609709.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
E1410]
gi|257436193|ref|ZP_05612240.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M876]
gi|282903798|ref|ZP_06311686.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus C160]
gi|282905561|ref|ZP_06313416.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282908536|ref|ZP_06316366.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282910815|ref|ZP_06318618.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282914020|ref|ZP_06321807.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M899]
gi|282924065|ref|ZP_06331741.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus C101]
gi|283770306|ref|ZP_06343198.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
H19]
gi|283957986|ref|ZP_06375437.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus A017934/97]
gi|293501051|ref|ZP_06666902.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 58-424]
gi|293510013|ref|ZP_06668721.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M809]
gi|293526600|ref|ZP_06671285.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M1015]
gi|295427730|ref|ZP_06820362.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|297591312|ref|ZP_06949950.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus MN8]
gi|379020952|ref|YP_005297614.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus aureus
subsp. aureus M013]
gi|384547487|ref|YP_005736740.1| GTP-binding protein [Staphylococcus aureus subsp. aureus ED133]
gi|384867874|ref|YP_005748070.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus TCH60]
gi|386830778|ref|YP_006237432.1| putative GTPase protein [Staphylococcus aureus subsp. aureus HO
5096 0412]
gi|387780352|ref|YP_005755150.1| putative GTPase protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|415683834|ref|ZP_11449036.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
CGS00]
gi|416839290|ref|ZP_11902684.1| ribosomal biogenesis GTPase [Staphylococcus aureus O11]
gi|416847454|ref|ZP_11907176.1| ribosomal biogenesis GTPase [Staphylococcus aureus O46]
gi|417653182|ref|ZP_12302916.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21193]
gi|417797222|ref|ZP_12444420.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21305]
gi|417797958|ref|ZP_12445144.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21310]
gi|417887003|ref|ZP_12531142.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21195]
gi|417903355|ref|ZP_12547202.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21269]
gi|418283063|ref|ZP_12895820.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21202]
gi|418312742|ref|ZP_12924251.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21334]
gi|418561434|ref|ZP_13125925.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21262]
gi|418566592|ref|ZP_13130965.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21264]
gi|418582077|ref|ZP_13146155.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1605]
gi|418597655|ref|ZP_13161177.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21342]
gi|418603088|ref|ZP_13166479.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21345]
gi|418655687|ref|ZP_13217531.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-105]
gi|418891876|ref|ZP_13445991.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1176]
gi|418897780|ref|ZP_13451850.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC341D]
gi|418900650|ref|ZP_13454707.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1214]
gi|418908954|ref|ZP_13462957.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG149]
gi|418917038|ref|ZP_13470997.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1267]
gi|418922825|ref|ZP_13476742.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1233]
gi|418950552|ref|ZP_13502716.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-160]
gi|418982156|ref|ZP_13529864.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1242]
gi|418985824|ref|ZP_13533510.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1500]
gi|49241535|emb|CAG40221.1| putative GTPase protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257271754|gb|EEV03892.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257274798|gb|EEV06285.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257278718|gb|EEV09337.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
68-397]
gi|257281444|gb|EEV11581.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
E1410]
gi|257284475|gb|EEV14595.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M876]
gi|282314037|gb|EFB44429.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus C101]
gi|282322088|gb|EFB52412.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M899]
gi|282325420|gb|EFB55729.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282327598|gb|EFB57881.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282330853|gb|EFB60367.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282595416|gb|EFC00380.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus C160]
gi|283460453|gb|EFC07543.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
H19]
gi|283790135|gb|EFC28952.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus A017934/97]
gi|290920672|gb|EFD97735.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M1015]
gi|291096056|gb|EFE26317.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 58-424]
gi|291466957|gb|EFF09475.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M809]
gi|295128088|gb|EFG57722.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|297576198|gb|EFH94914.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus MN8]
gi|298694536|gb|ADI97758.1| probable GTP-binding protein [Staphylococcus aureus subsp. aureus
ED133]
gi|312438379|gb|ADQ77450.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus TCH60]
gi|315194132|gb|EFU24525.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
CGS00]
gi|323441021|gb|EGA98728.1| ribosomal biogenesis GTPase [Staphylococcus aureus O11]
gi|323442338|gb|EGA99968.1| ribosomal biogenesis GTPase [Staphylococcus aureus O46]
gi|329733564|gb|EGG69892.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21193]
gi|334267270|gb|EGL85734.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21305]
gi|334277080|gb|EGL95319.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21310]
gi|341849976|gb|EGS91109.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21269]
gi|341858425|gb|EGS99215.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21195]
gi|344177454|emb|CCC87922.1| putative GTPase protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|359830261|gb|AEV78239.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus aureus
subsp. aureus M013]
gi|365168660|gb|EHM59998.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21202]
gi|365238387|gb|EHM79224.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21334]
gi|371969862|gb|EHO87300.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21264]
gi|371977645|gb|EHO94909.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21262]
gi|374393717|gb|EHQ65021.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21342]
gi|374393817|gb|EHQ65120.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21345]
gi|375035925|gb|EHS29019.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-105]
gi|375376724|gb|EHS80243.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-160]
gi|377703118|gb|EHT27434.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1214]
gi|377704437|gb|EHT28746.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1242]
gi|377705642|gb|EHT29946.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1500]
gi|377710487|gb|EHT34725.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1605]
gi|377731208|gb|EHT55265.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1176]
gi|377736148|gb|EHT60178.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1233]
gi|377750212|gb|EHT74150.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1267]
gi|377753992|gb|EHT77902.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG149]
gi|377760815|gb|EHT84691.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC341D]
gi|385196170|emb|CCG15791.1| putative GTPase protein [Staphylococcus aureus subsp. aureus HO
5096 0412]
Length = 294
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 142/284 (50%), Gaps = 40/284 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D++ N P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKS 134
D+++ + +W FF + V++ + N+K+ KF + + L+
Sbjct: 60 KDMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPR 119
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ M++GIPNVGKS L N L K A +PG TK +
Sbjct: 120 -------AIRAMIVGIPNVGKSTLINKL-----------AKRSIAQTGNKPGVTKQQQWI 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
K+ + + +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L L +D
Sbjct: 162 KVGNA--LQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLA 219
Query: 255 KKWAKFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQV 298
+ A + I ++ + + D + G + G+I +R N D+ V
Sbjct: 220 RLKAHYKI-EVPEDAEIIAWFD-AIGKKRGLI-RRGNEIDYEAV 260
>gi|336054200|ref|YP_004562487.1| GTP-binding protein [Lactobacillus kefiranofaciens ZW3]
gi|333957577|gb|AEG40385.1| GTP-binding protein [Lactobacillus kefiranofaciens ZW3]
Length = 279
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 122/240 (50%), Gaps = 24/240 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A + D++ L+D+++EV D+RIP SS + S I++LNK DL
Sbjct: 6 WYPGHMNKARNQLEDKLGLIDVLVEVLDSRIPASSRNPMI--EKLVGSKPHIIILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ-AHVRNLRKSD-YDASSDTVT 144
A P K+W +Q N ++S + N+++ + ++ A RK + AS+ T+
Sbjct: 64 ADPVLTKKWTEKLNQPNKYILALDSLHNTNMQKLIALIKKAAAEKTRKLEARGASNPTIR 123
Query: 145 VMLLGIPNVGKSALANSL--HQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ L GIPN GKS + N L H + A V +PG TK LK +S NI
Sbjct: 124 IALAGIPNCGKSTIINRLVGHNV-------------AEVGNKPGVTKGQRWLKTSS--NI 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY-KKWAKFS 261
VLDTPGIL P+ D EV KLA GAI DS ++A + L NF Y K +FS
Sbjct: 169 QVLDTPGILWPKFSDEEVGYKLAALGAIKDSIFHADDVALFVLK--NFRAHYLKNLIRFS 226
>gi|21282855|ref|NP_645943.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
MW2]
gi|49486082|ref|YP_043303.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
MSSA476]
gi|297208111|ref|ZP_06924542.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|300912192|ref|ZP_07129635.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus TCH70]
gi|418317166|ref|ZP_12928590.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21340]
gi|418321912|ref|ZP_12933251.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VCU006]
gi|418875179|ref|ZP_13429439.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC93]
gi|418934145|ref|ZP_13487968.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC128]
gi|418988064|ref|ZP_13535737.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1835]
gi|448741760|ref|ZP_21723717.1| ribosomal biogenesis GTPase [Staphylococcus aureus KT/314250]
gi|448743315|ref|ZP_21725224.1| Ribosomal Biogenesis GTPase [Staphylococcus aureus KT/Y21]
gi|21204294|dbj|BAB94991.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244525|emb|CAG42954.1| putative GTPase protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|296887354|gb|EFH26256.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|300886438|gb|EFK81640.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus TCH70]
gi|365224527|gb|EHM65792.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VCU006]
gi|365239538|gb|EHM80340.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21340]
gi|377719852|gb|EHT44022.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1835]
gi|377770239|gb|EHT94001.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC93]
gi|377770888|gb|EHT94647.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC128]
gi|445547398|gb|ELY15667.1| ribosomal biogenesis GTPase [Staphylococcus aureus KT/314250]
gi|445563244|gb|ELY19406.1| Ribosomal Biogenesis GTPase [Staphylococcus aureus KT/Y21]
Length = 294
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 119/234 (50%), Gaps = 37/234 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D++ N P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKS 134
D+++ + +W FF + V++ + N+K+ KF + + L+
Sbjct: 60 KDMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPR 119
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ M++GIPNVGKS L N L K A +PG TK +
Sbjct: 120 -------AIRAMIVGIPNVGKSTLINKL-----------AKRSIAQTGNKPGVTKQQQWI 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
K+ + + +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L L
Sbjct: 162 KVGNA--LQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFL 213
>gi|228902341|ref|ZP_04066498.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
IBL 4222]
gi|423561756|ref|ZP_17538032.1| ribosome biogenesis GTPase A [Bacillus cereus MSX-A1]
gi|434376941|ref|YP_006611585.1| GTPase YlqF [Bacillus thuringiensis HD-789]
gi|228857310|gb|EEN01813.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
IBL 4222]
gi|401202013|gb|EJR08878.1| ribosome biogenesis GTPase A [Bacillus cereus MSX-A1]
gi|401875498|gb|AFQ27665.1| GTPase YlqF [Bacillus thuringiensis HD-789]
Length = 296
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 125/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +F ++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFKEKGHMAISINAQAGQGMKE----IAAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKQYPERLK 222
Query: 258 AKFSINQI 265
++++N+I
Sbjct: 223 ERYNLNEI 230
>gi|253733519|ref|ZP_04867684.1| GTP-binding protein [Staphylococcus aureus subsp. aureus TCH130]
gi|417898523|ref|ZP_12542443.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21259]
gi|253728573|gb|EES97302.1| GTP-binding protein [Staphylococcus aureus subsp. aureus TCH130]
gi|341848556|gb|EGS89719.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21259]
Length = 294
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 119/234 (50%), Gaps = 37/234 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D++ N P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKS 134
D+++ + +W FF + V++ + N+K+ KF + + L+
Sbjct: 60 KDMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPR 119
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ M++GIPNVGKS L N L K A +PG TK +
Sbjct: 120 -------AIRAMIVGIPNVGKSTLINKL-----------AKRSIAQTGNKPGVTKQQQWI 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
K+ + + +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L L
Sbjct: 162 KVGNA--LQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFL 213
>gi|427414160|ref|ZP_18904350.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella ratti
ACS-216-V-Col6b]
gi|425714536|gb|EKU77539.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella ratti
ACS-216-V-Col6b]
Length = 306
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 118/228 (51%), Gaps = 23/228 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA ATR I + + VD+++E+ DARIP SS ++ P I+VLNK
Sbjct: 14 WFPGHMAKATRMIKEYVKKVDVVIELLDARIPRSSANPVISEVVGQKPH-----IVVLNK 68
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
DLA+P KEW+ +F++Q ++S K+ +K ++ + + + + S
Sbjct: 69 ADLANPQATKEWVAYFEKQGLTVLAIDSKTGKGNKQLVKAVERLAQPIIDKWKNKGIRSR 128
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+V ++LGIPNVGKS L N L A+K PG T+ +KI +
Sbjct: 129 SVRTIILGIPNVGKSTLINKLAGAAATRTADK-----------PGHTRGQQWVKIGK--D 175
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ +LDTPG+L P++ D ++LA+TGAI D + + + L +N
Sbjct: 176 LELLDTPGVLWPKLEDQRAAARLAMTGAISDDVYDLESVMKQLLNQVN 223
>gi|57651812|ref|YP_186118.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
COL]
gi|87162211|ref|YP_493833.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88194951|ref|YP_499751.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|151221365|ref|YP_001332187.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
str. Newman]
gi|161509409|ref|YP_001575068.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|221142033|ref|ZP_03566526.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|258452542|ref|ZP_05700548.1| ribosomal biogenesis GTPase [Staphylococcus aureus A5948]
gi|262048141|ref|ZP_06021028.1| hypothetical protein SAD30_1917 [Staphylococcus aureus D30]
gi|262051870|ref|ZP_06024086.1| hypothetical protein SA930_1420 [Staphylococcus aureus 930918-3]
gi|269202859|ref|YP_003282128.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
ED98]
gi|282920027|ref|ZP_06327756.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9765]
gi|284024236|ref|ZP_06378634.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
132]
gi|294848238|ref|ZP_06788985.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9754]
gi|296274800|ref|ZP_06857307.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
MR1]
gi|304381193|ref|ZP_07363846.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|379014434|ref|YP_005290670.1| GTPase YlqF [Staphylococcus aureus subsp. aureus VC40]
gi|384869777|ref|YP_005752491.1| GTP-binding protein [Staphylococcus aureus subsp. aureus T0131]
gi|386728926|ref|YP_006195309.1| GTP-binding protein [Staphylococcus aureus subsp. aureus 71193]
gi|387142852|ref|YP_005731245.1| putative GTPase protein [Staphylococcus aureus subsp. aureus TW20]
gi|387602518|ref|YP_005734039.1| GTPase family [Staphylococcus aureus subsp. aureus ST398]
gi|404478583|ref|YP_006710013.1| GTPase protein [Staphylococcus aureus 08BA02176]
gi|415686433|ref|ZP_11450522.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
CGS01]
gi|417648959|ref|ZP_12298771.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21189]
gi|418281427|ref|ZP_12894238.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21178]
gi|418286379|ref|ZP_12899025.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21209]
gi|418309862|ref|ZP_12921413.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21331]
gi|418317684|ref|ZP_12929100.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21232]
gi|418570773|ref|ZP_13135034.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21283]
gi|418579074|ref|ZP_13143169.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1114]
gi|418649313|ref|ZP_13211341.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-91]
gi|418658317|ref|ZP_13220049.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-111]
gi|418873497|ref|ZP_13427792.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-125]
gi|418886504|ref|ZP_13440652.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1150]
gi|418903452|ref|ZP_13457493.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1770]
gi|418906178|ref|ZP_13460205.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|418911850|ref|ZP_13465833.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG547]
gi|418925476|ref|ZP_13479378.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG2018]
gi|418928500|ref|ZP_13482386.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1612]
gi|418948218|ref|ZP_13500538.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-157]
gi|418955486|ref|ZP_13507426.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-189]
gi|418980052|ref|ZP_13527840.1| GTP-binding protein [Staphylococcus aureus subsp. aureus DR10]
gi|419774366|ref|ZP_14300336.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CO-23]
gi|421150193|ref|ZP_15609849.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|422742360|ref|ZP_16796366.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus MRSA177]
gi|422745526|ref|ZP_16799465.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus MRSA131]
gi|424785073|ref|ZP_18211876.1| 50S ribosomal subunit maturation GTPase [Staphylococcus aureus
CN79]
gi|440706067|ref|ZP_20886816.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21282]
gi|440734689|ref|ZP_20914301.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus DSM 20231]
gi|443639731|ref|ZP_21123732.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21196]
gi|57285998|gb|AAW38092.1| GTP-binding protein, putative [Staphylococcus aureus subsp. aureus
COL]
gi|87128185|gb|ABD22699.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202509|gb|ABD30319.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|150374165|dbj|BAF67425.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160368218|gb|ABX29189.1| possible GTP-binding protein [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257859760|gb|EEV82602.1| ribosomal biogenesis GTPase [Staphylococcus aureus A5948]
gi|259160271|gb|EEW45299.1| hypothetical protein SA930_1420 [Staphylococcus aureus 930918-3]
gi|259163707|gb|EEW48262.1| hypothetical protein SAD30_1917 [Staphylococcus aureus D30]
gi|262075149|gb|ACY11122.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
ED98]
gi|269940735|emb|CBI49116.1| putative GTPase protein [Staphylococcus aureus subsp. aureus TW20]
gi|282594743|gb|EFB99727.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9765]
gi|283470456|emb|CAQ49667.1| GTPase family [Staphylococcus aureus subsp. aureus ST398]
gi|294825038|gb|EFG41460.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9754]
gi|304340176|gb|EFM06117.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|315198483|gb|EFU28812.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
CGS01]
gi|320140941|gb|EFW32788.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320144344|gb|EFW36110.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus MRSA177]
gi|329313912|gb|AEB88325.1| Possible GTP-binding protein [Staphylococcus aureus subsp. aureus
T0131]
gi|329728952|gb|EGG65366.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21189]
gi|365165249|gb|EHM57077.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21178]
gi|365167087|gb|EHM58563.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21209]
gi|365237985|gb|EHM78824.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21331]
gi|365244952|gb|EHM85604.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21232]
gi|371982953|gb|EHP00101.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21283]
gi|374363131|gb|AEZ37236.1| GTPase YlqF [Staphylococcus aureus subsp. aureus VC40]
gi|375029686|gb|EHS23011.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-91]
gi|375038869|gb|EHS31824.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-111]
gi|375366034|gb|EHS70046.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-125]
gi|375370969|gb|EHS74761.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-189]
gi|375373165|gb|EHS76862.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-157]
gi|377697101|gb|EHT21456.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1114]
gi|377725228|gb|EHT49343.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG547]
gi|377725457|gb|EHT49570.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1150]
gi|377738412|gb|EHT62421.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1612]
gi|377742467|gb|EHT66452.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1770]
gi|377744545|gb|EHT68522.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG2018]
gi|377765478|gb|EHT89328.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|379992215|gb|EIA13672.1| GTP-binding protein [Staphylococcus aureus subsp. aureus DR10]
gi|383971892|gb|EID87954.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CO-23]
gi|384230219|gb|AFH69466.1| GTP-binding protein [Staphylococcus aureus subsp. aureus 71193]
gi|394329583|gb|EJE55685.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|404440072|gb|AFR73265.1| putative GTPase protein [Staphylococcus aureus 08BA02176]
gi|421956483|gb|EKU08812.1| 50S ribosomal subunit maturation GTPase [Staphylococcus aureus
CN79]
gi|436431717|gb|ELP29070.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus DSM 20231]
gi|436507598|gb|ELP43278.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21282]
gi|443406382|gb|ELS64962.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21196]
Length = 294
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 121/238 (50%), Gaps = 37/238 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D++ N P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKS 134
D+++ + +W FF + V++ + N+K+ KF + + L+
Sbjct: 60 KDMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPR 119
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ M++GIPNVGKS L N L K A +PG TK +
Sbjct: 120 -------AIRAMIVGIPNVGKSTLINKL-----------AKRSIAQTGNKPGVTKQQQWI 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSD 252
K+ + + +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L L +D
Sbjct: 162 KVGNA--LQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQND 217
>gi|406669367|ref|ZP_11076644.1| ribosome biogenesis GTP-binding protein YlqF [Facklamia ignava CCUG
37419]
gi|405583402|gb|EKB57343.1| ribosome biogenesis GTP-binding protein YlqF [Facklamia ignava CCUG
37419]
Length = 290
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 113/214 (52%), Gaps = 23/214 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++ +VDI++E+ DARIP SS D++ S RR++ LNK
Sbjct: 5 WYPGHMAKAKRLAIEKLSMVDIVVELIDARIPQSSRNPVIDEI-----IGSKRRVIALNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
DLA P +EW+ F Q + +++ ++ +++ + ++ + + ++ S
Sbjct: 60 ADLADPVATREWVQTFQSQGHAAIAIDAQHQKGIRQLKELIRKEMAPVFEEQAAKGILSK 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ +M+LGIPNVGKS L N +G+ A +PG TK LKI +
Sbjct: 120 NIRLMILGIPNVGKSTLINRF--VGK---------NQAITGNKPGVTKAQRWLKIDR--D 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFV 235
+LDTPGIL P+ D + KLA+TGAI D +
Sbjct: 167 FELLDTPGILWPKFEDQTIGMKLAITGAIKDDLL 200
>gi|283768288|ref|ZP_06341200.1| ribosome biogenesis GTP-binding protein YlqF [Bulleidia extructa
W1219]
gi|283104680|gb|EFC06052.1| ribosome biogenesis GTP-binding protein YlqF [Bulleidia extructa
W1219]
Length = 286
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 116/227 (51%), Gaps = 36/227 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A R +++++ +VD+++E RDARIP +S+ DQL P R+++L K
Sbjct: 6 WYPGHMEKARREMSEKVKVVDMVIECRDARIPLASKNPLIDQLIGQKP-----RLILLTK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVN-----SHNKDNVKEFLKFLQAHVRNLRKSDYDA 138
+DLA P + KEWI +FD++N + VN K+ V LK N +K D
Sbjct: 61 IDLADPIKIKEWIRYFDRENQKAIAVNMKKGQGFQKEIVSACLKL------NQKKRDKQR 114
Query: 139 SSDT----VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
S + M+ GIPNVGKS L N + R+ A + PG T+ + L
Sbjct: 115 SRGIEPRPIRAMVCGIPNVGKSTLINRISGKNRLEVANR-----------PGVTRSLTWL 163
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELA 241
+ + +LDTPG+L P+ D V S LA+ G+I + + K +A
Sbjct: 164 H--ADRELDLLDTPGVLWPKFEDQRVGSLLAVLGSINEDILDQKFIA 208
>gi|258423916|ref|ZP_05686801.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9635]
gi|417891835|ref|ZP_12535892.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21200]
gi|418308711|ref|ZP_12920317.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21194]
gi|418559226|ref|ZP_13123772.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21252]
gi|418889035|ref|ZP_13443171.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1524]
gi|418993863|ref|ZP_13541499.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG290]
gi|257845945|gb|EEV69974.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9635]
gi|341851121|gb|EGS92050.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21200]
gi|365237737|gb|EHM78580.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21194]
gi|371975517|gb|EHO92811.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21252]
gi|377745913|gb|EHT69888.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG290]
gi|377754545|gb|EHT78454.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1524]
Length = 294
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 121/238 (50%), Gaps = 37/238 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D++ N P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKS 134
D+++ + +W FF + V++ + N+K+ KF + + L+
Sbjct: 60 KDMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPR 119
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ M++GIPNVGKS L N L K A +PG TK +
Sbjct: 120 -------AIRAMIVGIPNVGKSTLINKL-----------AKRSIAQTGNKPGVTKQQQWI 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSD 252
K+ + + +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L L +D
Sbjct: 162 KVGNA--LQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQND 217
>gi|417901371|ref|ZP_12545247.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21266]
gi|418599669|ref|ZP_13163149.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21343]
gi|341845210|gb|EGS86412.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21266]
gi|374396327|gb|EHQ67568.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21343]
Length = 294
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 119/234 (50%), Gaps = 37/234 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D++ N P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKS 134
D+++ + +W FF + V++ + N+K+ KF + + L+
Sbjct: 60 KDMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPR 119
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ M++GIPNVGKS L N L K A +PG TK +
Sbjct: 120 -------AIRAMIVGIPNVGKSTLINKL-----------AKRSIAQTGNKPGVTKQQQWI 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
K+ + + +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L L
Sbjct: 162 KVGNA--LQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFL 213
>gi|254416738|ref|ZP_05030488.1| GTPase, putative [Coleofasciculus chthonoplastes PCC 7420]
gi|196176478|gb|EDX71492.1| GTPase, putative [Coleofasciculus chthonoplastes PCC 7420]
Length = 285
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 130/257 (50%), Gaps = 33/257 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A R + +++ VD++LEVRDARIP ++ HHP + RILV+
Sbjct: 5 WYPGHIAKAERQLKEQLKRVDVVLEVRDARIPLTT-------HHPQTAEWVGNKSRILVI 57
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAH--VRNLRKSDYDAS 139
N+MDL +P + W ++F +Q + N+ ++E + Q N R+ +
Sbjct: 58 NRMDLITPKTQQLWTSWFQEQGETPYWTNAQQGKGIREVAQAAQQTGVQMNQRRKNRGMQ 117
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
V +++G PNVGKSAL N L +GR R + +PG T+ + ++I+
Sbjct: 118 PRPVRAVVIGFPNVGKSALINRL--LGR---------RVVDSARRPGVTRQLRWVRISDQ 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAK 259
I +LD PG++P ++ + E KLA+ IG++ + +A F+ +L S + +
Sbjct: 167 --IELLDAPGVIPAKLQNQEDALKLAICDDIGEASYDNQRVACGFVDLLKRSPDLATGDR 224
Query: 260 FSINQINKPLTLHHKAD 276
S + +LH++ D
Sbjct: 225 TSTS------SLHNRYD 235
>gi|385781471|ref|YP_005757642.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 11819-97]
gi|418572280|ref|ZP_13136492.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21333]
gi|364522460|gb|AEW65210.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 11819-97]
gi|371984764|gb|EHP01873.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21333]
Length = 294
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 119/234 (50%), Gaps = 37/234 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D++ N P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKS 134
D+++ + +W FF + V++ + N+K+ KF + + L+
Sbjct: 60 KDMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPR 119
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ M++GIPNVGKS L N L K A +PG TK +
Sbjct: 120 -------AIRAMIVGIPNVGKSTLINKL-----------AKRSIAQTGNKPGVTKQQQWI 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
K+ + + +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L L
Sbjct: 162 KVGNA--LQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFL 213
>gi|82750846|ref|YP_416587.1| ribosomal biogenesis GTPase [Staphylococcus aureus RF122]
gi|82656377|emb|CAI80796.1| probable GTP-binding protein [Staphylococcus aureus RF122]
Length = 294
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 121/238 (50%), Gaps = 37/238 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D++ N P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKS 134
D+++ + +W FF + V++ + N+K+ KF + + L+
Sbjct: 60 KDMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPR 119
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ M++GIPNVGKS L N L K A +PG TK +
Sbjct: 120 -------AIRAMIVGIPNVGKSTLINKL-----------AKRSIAQTGNKPGVTKQQQWI 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSD 252
K+ + + +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L L +D
Sbjct: 162 KVGNA--LQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQND 217
>gi|383852977|ref|XP_003702001.1| PREDICTED: mitochondrial GTPase 1-like [Megachile rotundata]
Length = 321
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 123/245 (50%), Gaps = 14/245 (5%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM R + ++ VD I+EV DAR+P S + + I +L+KMDL
Sbjct: 26 WFPGHMQKGIRQMERQLKNVDCIIEVHDARVPISGHYADFKKTLT-GIKPHIFLLSKMDL 84
Query: 87 ASPTQFKEWITFFDQQNCPSF---GVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTV 143
A T K I Q+N + + N VK L Q ++ + + A +
Sbjct: 85 ADMTLKKSIIQNLSQENLSNVVFSNLKDMNCKGVKNLLPLAQKLIKESNRFNR-AQETSY 143
Query: 144 TVMLLGIPNVGKSALANSLHQIG-RITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPN 201
+M++G+PNVGKS+L N L + R T A A V G T+ + + ++I+ P
Sbjct: 144 QIMIIGVPNVGKSSLINRLRNVNLRKTNA-------AHVGGVAGITRSVSTRIQISEDPK 196
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
IYVLDTPGIL P+++DV+ KLAL G + D VG + LA Y L LN + +++ K
Sbjct: 197 IYVLDTPGILTPKLNDVDTGLKLALVGCMQDHLVGPEVLADYLLFWLNKNGKFEYVEKLG 256
Query: 262 INQIN 266
+ + N
Sbjct: 257 LTEPN 261
>gi|420199029|ref|ZP_14704713.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM031]
gi|394272715|gb|EJE17165.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM031]
Length = 287
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 120/229 (52%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D + P R+++LNK
Sbjct: 5 WYPGHMAKAKRQVSEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK----EFLKFLQAHVRNLRKSDYDAS 139
D+ + + ++W T+F ++ V++ + N+K E +K Q R+
Sbjct: 60 KDMTNLKELEKWETYFKDESFYPVAVDAKHGKNLKNVEVEAIKATQEKFD--REKAKGLK 117
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS L N L + + E G +PG TK +K+
Sbjct: 118 PRAIRAMIVGIPNVGKSTLINKL---AKRSITETGN--------KPGVTKQQQWIKVGK- 165
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
++ +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L +
Sbjct: 166 -SLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFM 213
>gi|376261100|ref|YP_005147820.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
BNL1100]
gi|373945094|gb|AEY66015.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
BNL1100]
Length = 292
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 115/228 (50%), Gaps = 31/228 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA R IA+ + LVD+I+E+ DARIPFSS E + L N+ P R++ NK
Sbjct: 5 WFPGHMAKTRRLIAENLKLVDVIIELLDARIPFSSRNPEINSLINNKP-----RLVAFNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT- 142
DLA ++WI ++ Q +NS N + E ++A R L + +
Sbjct: 60 SDLADDRISRQWIKWYADQGIDCILINSINGKGLNE----IKARARELMSEKIERNKAKG 115
Query: 143 -----VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
V M++GIPNVGKS+ N + +G+ TA +PG T+ ++I
Sbjct: 116 KLFTPVRTMVVGIPNVGKSSFINKI--VGKATAV---------TGDRPGVTRGKQWIRIN 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
S + +LDTPGIL P+ D EV LA TGAI D + E+A L
Sbjct: 165 SE--MELLDTPGILWPKFEDQEVGMNLAFTGAIKDDIMDTGEVAMELL 210
>gi|229174504|ref|ZP_04302036.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus MM3]
gi|228609064|gb|EEK66354.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus MM3]
Length = 296
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 125/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +F ++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFKEKGQMAISINAQAGQGMKE----IAAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLK 222
Query: 258 AKFSINQI 265
++++N+I
Sbjct: 223 ERYNLNEI 230
>gi|444400229|ref|ZP_21197643.1| ribosome biogenesis GTP-binding protein YlqF, partial
[Streptococcus pneumoniae PNI0007]
gi|444266957|gb|ELU72883.1| ribosome biogenesis GTP-binding protein YlqF, partial
[Streptococcus pneumoniae PNI0007]
Length = 281
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + GI F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GINYFKEHY 218
>gi|168577175|ref|ZP_02722990.1| GTP-binding protein [Streptococcus pneumoniae MLV-016]
gi|419471085|ref|ZP_14010944.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA07914]
gi|419503941|ref|ZP_14043610.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47760]
gi|183577218|gb|EDT97746.1| GTP-binding protein [Streptococcus pneumoniae MLV-016]
gi|379545801|gb|EHZ10940.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA07914]
gi|379606618|gb|EHZ71365.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47760]
Length = 283
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + GI F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GINYFKEHY 218
>gi|228992566|ref|ZP_04152493.1| Ras superfamily GTP-binding protein YlqF [Bacillus pseudomycoides
DSM 12442]
gi|228998614|ref|ZP_04158201.1| Ras superfamily GTP-binding protein YlqF [Bacillus mycoides
Rock3-17]
gi|229006114|ref|ZP_04163802.1| Ras superfamily GTP-binding protein YlqF [Bacillus mycoides
Rock1-4]
gi|228755190|gb|EEM04547.1| Ras superfamily GTP-binding protein YlqF [Bacillus mycoides
Rock1-4]
gi|228761082|gb|EEM10041.1| Ras superfamily GTP-binding protein YlqF [Bacillus mycoides
Rock3-17]
gi|228767200|gb|EEM15836.1| Ras superfamily GTP-binding protein YlqF [Bacillus pseudomycoides
DSM 12442]
Length = 290
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 125/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +F+++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFEEKGHKAISINAQAGQGMKE----IAAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERIQ 222
Query: 258 AKFSINQI 265
++ I++I
Sbjct: 223 ERYKISEI 230
>gi|22299050|ref|NP_682297.1| ribosomal biogenesis GTPase [Thermosynechococcus elongatus BP-1]
gi|22295232|dbj|BAC09059.1| tlr1507 [Thermosynechococcus elongatus BP-1]
Length = 285
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 111/212 (52%), Gaps = 23/212 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H+A A RA+ +++ VD+I EVRDARIP +S Q+R S +R+LVLN MD
Sbjct: 7 WYPGHIAKAERALKEQLKQVDVIFEVRDARIPLASCHPQIRQWA--SGKQRLLVLNGMDR 64
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVR-----NLRKSDYDASSD 141
S ++W+T+F+ Q F N+ + ++ + QA VR N R+
Sbjct: 65 ISDRDRQQWLTWFETQGETVFFTNAQRGEGIR---RLEQAAVRAGAAINQRRQQRGMQVR 121
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V ++LG PNVGKSAL N L Q + +A + PG T+ + ++++ P
Sbjct: 122 AVRAVVLGFPNVGKSALINRLLQQRVVESAAR-----------PGVTRQLRWVRLS--PV 168
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDS 233
+ +LD PG+LP + E KLA+ IG +
Sbjct: 169 LELLDAPGVLPMNFKNQEAAVKLAICDDIGQA 200
>gi|444383788|ref|ZP_21181969.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS8106]
gi|444386338|ref|ZP_21184398.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS8203]
gi|444247922|gb|ELU54447.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS8203]
gi|444248349|gb|ELU54859.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS8106]
Length = 289
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 117/231 (50%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 12 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 69
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 70 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIQIETL 128
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 129 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 175
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ GI F + Y
Sbjct: 176 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVT--IFGINYFKEHY 224
>gi|148985763|ref|ZP_01818891.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP3-BS71]
gi|148989185|ref|ZP_01820575.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP6-BS73]
gi|149004284|ref|ZP_01829061.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP14-BS69]
gi|237650102|ref|ZP_04524354.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae CCRI 1974]
gi|237822304|ref|ZP_04598149.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae CCRI 1974M2]
gi|387757506|ref|YP_006064485.1| putative GTPase protein [Streptococcus pneumoniae OXC141]
gi|405761239|ref|YP_006701835.1| GTPase protein [Streptococcus pneumoniae SPNA45]
gi|418086863|ref|ZP_12724033.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47033]
gi|418143995|ref|ZP_12780795.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA13494]
gi|418202401|ref|ZP_12838831.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA52306]
gi|418232200|ref|ZP_12858787.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA07228]
gi|418236660|ref|ZP_12863228.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA19690]
gi|419455545|ref|ZP_13995503.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae EU-NP04]
gi|419457544|ref|ZP_13997488.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA02254]
gi|419480049|ref|ZP_14019855.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA19101]
gi|419499742|ref|ZP_14039437.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47597]
gi|421285252|ref|ZP_15736029.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA60190]
gi|421289760|ref|ZP_15740511.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA54354]
gi|421305079|ref|ZP_15755735.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA62331]
gi|421307476|ref|ZP_15758119.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA60132]
gi|147757778|gb|EDK64792.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP14-BS69]
gi|147922067|gb|EDK73190.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP3-BS71]
gi|147925408|gb|EDK76486.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP6-BS73]
gi|301800095|emb|CBW32696.1| putative GTPase protein [Streptococcus pneumoniae OXC141]
gi|353759124|gb|EHD39710.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47033]
gi|353809736|gb|EHD89996.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA13494]
gi|353868204|gb|EHE48094.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA52306]
gi|353886927|gb|EHE66707.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA07228]
gi|353892892|gb|EHE72640.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA19690]
gi|379531417|gb|EHY96651.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA02254]
gi|379570620|gb|EHZ35581.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA19101]
gi|379600768|gb|EHZ65548.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47597]
gi|379628679|gb|EHZ93281.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae EU-NP04]
gi|395887231|gb|EJG98246.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA60190]
gi|395889001|gb|EJH00012.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA54354]
gi|395905741|gb|EJH16646.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA62331]
gi|395907389|gb|EJH18280.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA60132]
gi|404278128|emb|CCM08711.1| putative GTPase protein [Streptococcus pneumoniae SPNA45]
gi|429316132|emb|CCP35797.1| putative GTPase protein [Streptococcus pneumoniae SPN034156]
gi|429319474|emb|CCP32750.1| putative GTPase protein [Streptococcus pneumoniae SPN034183]
gi|429321291|emb|CCP34724.1| putative GTPase protein [Streptococcus pneumoniae SPN994039]
gi|429323111|emb|CCP30765.1| putative GTPase protein [Streptococcus pneumoniae SPN994038]
Length = 283
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQEIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + GI F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GINYFKEHY 218
>gi|168486443|ref|ZP_02710951.1| GTP-binding protein [Streptococcus pneumoniae CDC1087-00]
gi|182684111|ref|YP_001835858.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae CGSP14]
gi|303255771|ref|ZP_07341813.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae BS455]
gi|303260562|ref|ZP_07346528.1| GTP-binding protein [Streptococcus pneumoniae SP-BS293]
gi|303262696|ref|ZP_07348635.1| GTP-binding protein [Streptococcus pneumoniae SP14-BS292]
gi|303265231|ref|ZP_07351142.1| GTP-binding protein [Streptococcus pneumoniae BS397]
gi|303266994|ref|ZP_07352868.1| GTP-binding protein [Streptococcus pneumoniae BS457]
gi|303269264|ref|ZP_07355039.1| GTP-binding protein [Streptococcus pneumoniae BS458]
gi|387759386|ref|YP_006066364.1| putative GTPase protein [Streptococcus pneumoniae INV200]
gi|418139432|ref|ZP_12776261.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA13338]
gi|418180549|ref|ZP_12817119.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41688]
gi|418184953|ref|ZP_12821497.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47283]
gi|418200011|ref|ZP_12836456.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47976]
gi|419509742|ref|ZP_14049386.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae NP141]
gi|419514741|ref|ZP_14054366.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae England14-9]
gi|419523400|ref|ZP_14062979.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA13723]
gi|419530405|ref|ZP_14069933.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA40028]
gi|421213212|ref|ZP_15670171.1| hypothetical protein AMCSP12_001096 [Streptococcus pneumoniae
2070108]
gi|421215342|ref|ZP_15672268.1| hypothetical protein AMCSP04_001060 [Streptococcus pneumoniae
2070109]
gi|421268450|ref|ZP_15719320.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae SPAR95]
gi|421295838|ref|ZP_15746550.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA58581]
gi|182629445|gb|ACB90393.1| GTP-binding protein [Streptococcus pneumoniae CGSP14]
gi|183570532|gb|EDT91060.1| GTP-binding protein [Streptococcus pneumoniae CDC1087-00]
gi|301801975|emb|CBW34703.1| putative GTPase protein [Streptococcus pneumoniae INV200]
gi|302597283|gb|EFL64387.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae BS455]
gi|302636128|gb|EFL66624.1| GTP-binding protein [Streptococcus pneumoniae SP14-BS292]
gi|302638275|gb|EFL68744.1| GTP-binding protein [Streptococcus pneumoniae SP-BS293]
gi|302641221|gb|EFL71593.1| GTP-binding protein [Streptococcus pneumoniae BS458]
gi|302643474|gb|EFL73747.1| GTP-binding protein [Streptococcus pneumoniae BS457]
gi|302645202|gb|EFL75438.1| GTP-binding protein [Streptococcus pneumoniae BS397]
gi|353845251|gb|EHE25293.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41688]
gi|353849272|gb|EHE29278.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47283]
gi|353865058|gb|EHE44967.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47976]
gi|353905469|gb|EHE80897.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA13338]
gi|379557683|gb|EHZ22724.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA13723]
gi|379573757|gb|EHZ38707.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA40028]
gi|379632935|gb|EHZ97504.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae NP141]
gi|379635290|gb|EHZ99848.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae England14-9]
gi|395580214|gb|EJG40705.1| hypothetical protein AMCSP12_001096 [Streptococcus pneumoniae
2070108]
gi|395580727|gb|EJG41205.1| hypothetical protein AMCSP04_001060 [Streptococcus pneumoniae
2070109]
gi|395869945|gb|EJG81059.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae SPAR95]
gi|395897051|gb|EJH08015.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA58581]
Length = 283
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQEIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + GI F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GINYFKEHY 218
>gi|410476458|ref|YP_006743217.1| GTP-binding protein [Streptococcus pneumoniae gamPNI0373]
gi|419482192|ref|ZP_14021984.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA40563]
gi|421206625|ref|ZP_15663680.1| hypothetical protein AMCSP20_001190 [Streptococcus pneumoniae
2090008]
gi|421229801|ref|ZP_15686469.1| hypothetical protein AMCSP01_001172 [Streptococcus pneumoniae
2061376]
gi|421292077|ref|ZP_15742813.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA56348]
gi|421311988|ref|ZP_15762592.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA58981]
gi|444388674|ref|ZP_21186651.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS125219]
gi|444389726|ref|ZP_21187641.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS70012]
gi|444392456|ref|ZP_21190180.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS81218]
gi|444395264|ref|ZP_21192810.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0002]
gi|444397608|ref|ZP_21195091.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0006]
gi|444403041|ref|ZP_21200162.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0008]
gi|444405848|ref|ZP_21202693.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0009]
gi|444407230|ref|ZP_21203897.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0010]
gi|444417011|ref|ZP_21213075.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0360]
gi|444419475|ref|ZP_21215335.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0427]
gi|379580328|gb|EHZ45221.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA40563]
gi|395575422|gb|EJG35990.1| hypothetical protein AMCSP20_001190 [Streptococcus pneumoniae
2090008]
gi|395595361|gb|EJG55593.1| hypothetical protein AMCSP01_001172 [Streptococcus pneumoniae
2061376]
gi|395893075|gb|EJH04064.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA56348]
gi|395910729|gb|EJH21599.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA58981]
gi|406369403|gb|AFS43093.1| GTP-binding protein [Streptococcus pneumoniae gamPNI0373]
gi|444248554|gb|ELU55059.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS125219]
gi|444256189|gb|ELU62527.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS70012]
gi|444258583|gb|ELU64905.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0002]
gi|444260265|gb|ELU66573.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0006]
gi|444263351|gb|ELU69533.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS81218]
gi|444265368|gb|ELU71381.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0008]
gi|444270826|gb|ELU76577.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0010]
gi|444272140|gb|ELU77876.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0009]
gi|444284668|gb|ELU89789.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0360]
gi|444286762|gb|ELU91723.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0427]
Length = 283
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + GI F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GINYFKEHY 218
>gi|228922592|ref|ZP_04085892.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|365159385|ref|ZP_09355566.1| ribosome biogenesis GTPase A [Bacillus sp. 7_6_55CFAA_CT2]
gi|228837021|gb|EEM82362.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|363625383|gb|EHL76424.1| ribosome biogenesis GTPase A [Bacillus sp. 7_6_55CFAA_CT2]
Length = 296
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 125/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +F ++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFKEKGHMAISINAQAGQGMKE----IAAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLK 222
Query: 258 AKFSINQI 265
++++N+I
Sbjct: 223 ERYNLNEI 230
>gi|417938285|ref|ZP_12581583.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis SK970]
gi|343391375|gb|EGV03950.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis SK970]
Length = 283
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 122/243 (50%), Gaps = 21/243 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L R+L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPML--TKIIGDKPRLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPALTKEWRQYFESQGIQTLAINSKEQITVKVVTDAAKKLMAE-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSIN 263
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F Y + +
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKTHYPEKLQERFK 227
Query: 264 QIN 266
Q+N
Sbjct: 228 QMN 230
>gi|386588114|ref|YP_006084515.1| GTP1/OBG protein [Streptococcus suis A7]
gi|354985275|gb|AER44173.1| GTP1/OBG protein [Streptococcus suis A7]
Length = 283
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 116/223 (52%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 6 WFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKVDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASSDT 142
A P KEW ++F+ Q + +NS + VK+ ++ + LR+ +T
Sbjct: 64 ADPVCTKEWQSYFEGQGIRTLAINSKEQATVKKVTDAAKSLMKEKIERLRQRGI--QKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D EV KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDQEVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|206972755|ref|ZP_03233685.1| GTPase family protein [Bacillus cereus AH1134]
gi|218898991|ref|YP_002447402.1| ribosomal biogenesis GTPase [Bacillus cereus G9842]
gi|228909663|ref|ZP_04073486.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
IBL 200]
gi|228940926|ref|ZP_04103485.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228954114|ref|ZP_04116143.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228966783|ref|ZP_04127827.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228973855|ref|ZP_04134431.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228980445|ref|ZP_04140755.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
Bt407]
gi|229071336|ref|ZP_04204559.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus F65185]
gi|229081093|ref|ZP_04213603.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock4-2]
gi|229180114|ref|ZP_04307458.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus 172560W]
gi|384187898|ref|YP_005573794.1| ribosomal biogenesis GTPase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|402558836|ref|YP_006601560.1| GTPase YlqF [Bacillus thuringiensis HD-771]
gi|410676212|ref|YP_006928583.1| ribosome biogenesis GTPase A [Bacillus thuringiensis Bt407]
gi|423359126|ref|ZP_17336629.1| ribosome biogenesis GTPase A [Bacillus cereus VD022]
gi|423385341|ref|ZP_17362597.1| ribosome biogenesis GTPase A [Bacillus cereus BAG1X1-2]
gi|423412357|ref|ZP_17389477.1| ribosome biogenesis GTPase A [Bacillus cereus BAG3O-2]
gi|423425974|ref|ZP_17403005.1| ribosome biogenesis GTPase A [Bacillus cereus BAG3X2-2]
gi|423431858|ref|ZP_17408862.1| ribosome biogenesis GTPase A [Bacillus cereus BAG4O-1]
gi|423437293|ref|ZP_17414274.1| ribosome biogenesis GTPase A [Bacillus cereus BAG4X12-1]
gi|423503485|ref|ZP_17480077.1| ribosome biogenesis GTPase A [Bacillus cereus HD73]
gi|423528301|ref|ZP_17504746.1| ribosome biogenesis GTPase A [Bacillus cereus HuB1-1]
gi|423635391|ref|ZP_17611044.1| ribosome biogenesis GTPase A [Bacillus cereus VD156]
gi|449090779|ref|YP_007423220.1| GTPase family protein [Bacillus thuringiensis serovar kurstaki str.
HD73]
gi|452200277|ref|YP_007480358.1| 50S ribosomal subunit maturation GTPase RbgA [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|206732320|gb|EDZ49512.1| GTPase family protein [Bacillus cereus AH1134]
gi|218544561|gb|ACK96955.1| GTPase family protein [Bacillus cereus G9842]
gi|228603323|gb|EEK60800.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus 172560W]
gi|228702137|gb|EEL54613.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock4-2]
gi|228711790|gb|EEL63742.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus F65185]
gi|228779265|gb|EEM27522.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
Bt407]
gi|228785880|gb|EEM33883.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228792882|gb|EEM40440.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228805680|gb|EEM52270.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228818762|gb|EEM64828.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228849952|gb|EEM94783.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
IBL 200]
gi|326941607|gb|AEA17503.1| ribosomal biogenesis GTPase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|401084998|gb|EJP93244.1| ribosome biogenesis GTPase A [Bacillus cereus VD022]
gi|401104425|gb|EJQ12402.1| ribosome biogenesis GTPase A [Bacillus cereus BAG3O-2]
gi|401110721|gb|EJQ18620.1| ribosome biogenesis GTPase A [Bacillus cereus BAG3X2-2]
gi|401116614|gb|EJQ24452.1| ribosome biogenesis GTPase A [Bacillus cereus BAG4O-1]
gi|401120448|gb|EJQ28244.1| ribosome biogenesis GTPase A [Bacillus cereus BAG4X12-1]
gi|401278142|gb|EJR84078.1| ribosome biogenesis GTPase A [Bacillus cereus VD156]
gi|401635397|gb|EJS53152.1| ribosome biogenesis GTPase A [Bacillus cereus BAG1X1-2]
gi|401787488|gb|AFQ13527.1| GTPase YlqF [Bacillus thuringiensis HD-771]
gi|402451964|gb|EJV83783.1| ribosome biogenesis GTPase A [Bacillus cereus HuB1-1]
gi|402458839|gb|EJV90579.1| ribosome biogenesis GTPase A [Bacillus cereus HD73]
gi|409175341|gb|AFV19646.1| ribosome biogenesis GTPase A [Bacillus thuringiensis Bt407]
gi|449024536|gb|AGE79699.1| GTPase family protein [Bacillus thuringiensis serovar kurstaki str.
HD73]
gi|452105670|gb|AGG02610.1| 50S ribosomal subunit maturation GTPase RbgA [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 296
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 125/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +F ++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFKEKGHMAISINAQAGQGMKE----IAAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLK 222
Query: 258 AKFSINQI 265
++++N+I
Sbjct: 223 ERYNLNEI 230
>gi|15901020|ref|NP_345624.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae TIGR4]
gi|111658305|ref|ZP_01408995.1| hypothetical protein SpneT_02000534 [Streptococcus pneumoniae
TIGR4]
gi|148994504|ref|ZP_01823684.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP9-BS68]
gi|168483217|ref|ZP_02708169.1| GTP-binding protein [Streptococcus pneumoniae CDC1873-00]
gi|168488984|ref|ZP_02713183.1| GTP-binding protein [Streptococcus pneumoniae SP195]
gi|168492509|ref|ZP_02716652.1| GTP-binding protein [Streptococcus pneumoniae CDC0288-04]
gi|168493081|ref|ZP_02717224.1| GTP-binding protein [Streptococcus pneumoniae CDC3059-06]
gi|221231869|ref|YP_002511021.1| GTPase protein [Streptococcus pneumoniae ATCC 700669]
gi|225854631|ref|YP_002736143.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae JJA]
gi|225856833|ref|YP_002738344.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae P1031]
gi|225858943|ref|YP_002740453.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae 70585]
gi|383938074|ref|ZP_09991298.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudopneumoniae SK674]
gi|387626472|ref|YP_006062647.1| putative GTPase protein [Streptococcus pneumoniae INV104]
gi|415698636|ref|ZP_11457250.1| hypothetical protein CGSSp4595_1051 [Streptococcus pneumoniae
459-5]
gi|415749531|ref|ZP_11477475.1| hypothetical protein CGSSpSV35_1221 [Streptococcus pneumoniae SV35]
gi|415752216|ref|ZP_11479327.1| hypothetical protein CGSSpSV36_0939 [Streptococcus pneumoniae SV36]
gi|417679121|ref|ZP_12328518.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17570]
gi|417694074|ref|ZP_12343262.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47901]
gi|417696351|ref|ZP_12345530.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47368]
gi|418073927|ref|ZP_12711184.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA11184]
gi|418078628|ref|ZP_12715851.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 4027-06]
gi|418080600|ref|ZP_12717812.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 6735-05]
gi|418089532|ref|ZP_12726689.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA43265]
gi|418091790|ref|ZP_12728932.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44452]
gi|418098507|ref|ZP_12735606.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 6901-05]
gi|418105220|ref|ZP_12742278.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44500]
gi|418107579|ref|ZP_12744617.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41410]
gi|418110134|ref|ZP_12747157.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA49447]
gi|418112490|ref|ZP_12749492.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41538]
gi|418114707|ref|ZP_12751695.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 5787-06]
gi|418116873|ref|ZP_12753844.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 6963-05]
gi|418123415|ref|ZP_12760348.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44378]
gi|418125795|ref|ZP_12762703.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44511]
gi|418128000|ref|ZP_12764896.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae NP170]
gi|418130321|ref|ZP_12767205.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA07643]
gi|418135202|ref|ZP_12772059.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA11426]
gi|418137177|ref|ZP_12774019.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA11663]
gi|418162208|ref|ZP_12798894.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17328]
gi|418169180|ref|ZP_12805823.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA19077]
gi|418173517|ref|ZP_12810130.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41277]
gi|418175969|ref|ZP_12812564.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41437]
gi|418178176|ref|ZP_12814760.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41565]
gi|418182650|ref|ZP_12819211.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA43380]
gi|418187165|ref|ZP_12823693.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47360]
gi|418191711|ref|ZP_12828215.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47388]
gi|418193770|ref|ZP_12830262.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47439]
gi|418214344|ref|ZP_12841079.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA54644]
gi|418216589|ref|ZP_12843312.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae
Netherlands15B-37]
gi|418218899|ref|ZP_12845566.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae NP127]
gi|418221214|ref|ZP_12847868.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47751]
gi|418229903|ref|ZP_12856507.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae EU-NP01]
gi|418234359|ref|ZP_12860938.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA08780]
gi|418238721|ref|ZP_12865276.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|418972904|ref|ZP_13520955.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudopneumoniae ATCC BAA-960]
gi|419422948|ref|ZP_13963163.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA43264]
gi|419431512|ref|ZP_13971653.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae EU-NP05]
gi|419434262|ref|ZP_13974379.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA40183]
gi|419440240|ref|ZP_13980292.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA40410]
gi|419459991|ref|ZP_13999922.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA02270]
gi|419462316|ref|ZP_14002223.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA02714]
gi|419464642|ref|ZP_14004534.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA04175]
gi|419469002|ref|ZP_14008873.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA06083]
gi|419473203|ref|ZP_14013054.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA13430]
gi|419477817|ref|ZP_14017642.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA18068]
gi|419483974|ref|ZP_14023750.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA43257]
gi|419488131|ref|ZP_14027884.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA44386]
gi|419493154|ref|ZP_14032881.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47210]
gi|419497324|ref|ZP_14037033.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47522]
gi|419508232|ref|ZP_14047885.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA49542]
gi|419525897|ref|ZP_14065459.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA14373]
gi|421220306|ref|ZP_15677151.1| hypothetical protein AMCSP05_001043 [Streptococcus pneumoniae
2070425]
gi|421222642|ref|ZP_15679429.1| hypothetical protein AMCSP14_001065 [Streptococcus pneumoniae
2070531]
gi|421231901|ref|ZP_15688545.1| hypothetical protein AMCSP16_001058 [Streptococcus pneumoniae
2080076]
gi|421243084|ref|ZP_15699603.1| hypothetical protein AMCSP09_001314 [Streptococcus pneumoniae
2081074]
gi|421247419|ref|ZP_15703905.1| hypothetical protein AMCSP18_001369 [Streptococcus pneumoniae
2082170]
gi|421270518|ref|ZP_15721374.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae SPAR48]
gi|421272734|ref|ZP_15723577.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae SPAR55]
gi|421278937|ref|ZP_15729745.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA17301]
gi|421281121|ref|ZP_15731919.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA04672]
gi|421294440|ref|ZP_15745163.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA56113]
gi|421298596|ref|ZP_15749284.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA60080]
gi|421301024|ref|ZP_15751694.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA19998]
gi|421309576|ref|ZP_15760203.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA62681]
gi|444409972|ref|ZP_21206536.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0076]
gi|444413375|ref|ZP_21209691.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0153]
gi|444423525|ref|ZP_21219124.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0446]
gi|14972633|gb|AAK75264.1| GTP-binding protein [Streptococcus pneumoniae TIGR4]
gi|147927174|gb|EDK78210.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP9-BS68]
gi|172043516|gb|EDT51562.1| GTP-binding protein [Streptococcus pneumoniae CDC1873-00]
gi|183572498|gb|EDT93026.1| GTP-binding protein [Streptococcus pneumoniae SP195]
gi|183573327|gb|EDT93855.1| GTP-binding protein [Streptococcus pneumoniae CDC0288-04]
gi|183576748|gb|EDT97276.1| GTP-binding protein [Streptococcus pneumoniae CDC3059-06]
gi|220674329|emb|CAR68875.1| putative GTPase protein [Streptococcus pneumoniae ATCC 700669]
gi|225721097|gb|ACO16951.1| GTP-binding protein [Streptococcus pneumoniae 70585]
gi|225723566|gb|ACO19419.1| GTP-binding protein [Streptococcus pneumoniae JJA]
gi|225724745|gb|ACO20597.1| GTP-binding protein [Streptococcus pneumoniae P1031]
gi|301794257|emb|CBW36678.1| putative GTPase protein [Streptococcus pneumoniae INV104]
gi|332073500|gb|EGI83979.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17570]
gi|332201626|gb|EGJ15696.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47368]
gi|332203011|gb|EGJ17079.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47901]
gi|353747819|gb|EHD28475.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 4027-06]
gi|353750336|gb|EHD30977.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA11184]
gi|353753140|gb|EHD33764.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 6735-05]
gi|353762218|gb|EHD42781.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA43265]
gi|353763890|gb|EHD44440.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44452]
gi|353769867|gb|EHD50383.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 6901-05]
gi|353777285|gb|EHD57758.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44500]
gi|353779762|gb|EHD60226.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41410]
gi|353782337|gb|EHD62771.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA49447]
gi|353784356|gb|EHD64777.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41538]
gi|353786220|gb|EHD66633.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 5787-06]
gi|353789850|gb|EHD70242.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 6963-05]
gi|353796576|gb|EHD76915.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44511]
gi|353796761|gb|EHD77099.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44378]
gi|353800461|gb|EHD80775.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae NP170]
gi|353803613|gb|EHD83905.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA07643]
gi|353828251|gb|EHE08394.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17328]
gi|353834365|gb|EHE14466.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA19077]
gi|353838334|gb|EHE18412.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41277]
gi|353841793|gb|EHE21846.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41437]
gi|353844950|gb|EHE24993.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41565]
gi|353850887|gb|EHE30891.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA43380]
gi|353852395|gb|EHE32384.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47360]
gi|353857612|gb|EHE37575.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47388]
gi|353859750|gb|EHE39700.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47439]
gi|353871627|gb|EHE51498.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA54644]
gi|353872181|gb|EHE52047.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae
Netherlands15B-37]
gi|353875554|gb|EHE55406.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae NP127]
gi|353876137|gb|EHE55987.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47751]
gi|353888325|gb|EHE68100.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae EU-NP01]
gi|353888604|gb|EHE68378.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA08780]
gi|353894471|gb|EHE74213.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|353901804|gb|EHE77336.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA11663]
gi|353902439|gb|EHE77969.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA11426]
gi|379532095|gb|EHY97326.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA02270]
gi|379532147|gb|EHY97377.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA02714]
gi|379537676|gb|EHZ02858.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA04175]
gi|379547105|gb|EHZ12243.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA06083]
gi|379552710|gb|EHZ17799.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA13430]
gi|379558157|gb|EHZ23193.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA14373]
gi|379567199|gb|EHZ32186.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA18068]
gi|379575646|gb|EHZ40576.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA40183]
gi|379580007|gb|EHZ44903.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA40410]
gi|379583485|gb|EHZ48362.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA43257]
gi|379587474|gb|EHZ52322.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA43264]
gi|379590246|gb|EHZ55084.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA44386]
gi|379595192|gb|EHZ60001.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47210]
gi|379600793|gb|EHZ65572.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47522]
gi|379611950|gb|EHZ76672.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA49542]
gi|379630285|gb|EHZ94873.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae EU-NP05]
gi|381309912|gb|EIC50745.1| hypothetical protein CGSSpSV36_0939 [Streptococcus pneumoniae SV36]
gi|381316847|gb|EIC57589.1| hypothetical protein CGSSp4595_1051 [Streptococcus pneumoniae
459-5]
gi|381317825|gb|EIC58550.1| hypothetical protein CGSSpSV35_1221 [Streptococcus pneumoniae SV35]
gi|383350883|gb|EID28730.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudopneumoniae ATCC BAA-960]
gi|383715045|gb|EID71027.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudopneumoniae SK674]
gi|395587682|gb|EJG48026.1| hypothetical protein AMCSP05_001043 [Streptococcus pneumoniae
2070425]
gi|395587844|gb|EJG48184.1| hypothetical protein AMCSP14_001065 [Streptococcus pneumoniae
2070531]
gi|395595930|gb|EJG56156.1| hypothetical protein AMCSP16_001058 [Streptococcus pneumoniae
2080076]
gi|395608672|gb|EJG68764.1| hypothetical protein AMCSP09_001314 [Streptococcus pneumoniae
2081074]
gi|395614240|gb|EJG74261.1| hypothetical protein AMCSP18_001369 [Streptococcus pneumoniae
2082170]
gi|395868313|gb|EJG79431.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae SPAR48]
gi|395875628|gb|EJG86708.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae SPAR55]
gi|395880370|gb|EJG91423.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA17301]
gi|395882282|gb|EJG93329.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA04672]
gi|395894730|gb|EJH05710.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA56113]
gi|395898584|gb|EJH09528.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA19998]
gi|395902552|gb|EJH13485.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA60080]
gi|395910997|gb|EJH21866.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA62681]
gi|444273534|gb|ELU79207.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0153]
gi|444278463|gb|ELU83910.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0076]
gi|444286782|gb|ELU91742.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0446]
Length = 283
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + GI F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GINYFKEHY 218
>gi|42782930|ref|NP_980177.1| ribosomal biogenesis GTPase [Bacillus cereus ATCC 10987]
gi|402556041|ref|YP_006597312.1| GTPase YlqF [Bacillus cereus FRI-35]
gi|42738857|gb|AAS42785.1| GTPase family protein [Bacillus cereus ATCC 10987]
gi|401797251|gb|AFQ11110.1| GTPase YlqF [Bacillus cereus FRI-35]
Length = 296
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 127/250 (50%), Gaps = 35/250 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +F ++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFKEKGHMAISINAQAGQGMKE----IAAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYK 255
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + + D K
Sbjct: 165 KE--MELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPDRLK 222
Query: 256 KWAKFSINQI 265
+ ++++N I
Sbjct: 223 E--RYNLNDI 230
>gi|229192007|ref|ZP_04318977.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus ATCC
10876]
gi|228591558|gb|EEK49407.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus ATCC
10876]
Length = 296
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 125/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +F ++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFKEKGHMAISINAQAGQGMKE----IAAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLK 222
Query: 258 AKFSINQI 265
++++N+I
Sbjct: 223 ERYNLNEI 230
>gi|227893502|ref|ZP_04011307.1| GTP-binding protein [Lactobacillus ultunensis DSM 16047]
gi|227864672|gb|EEJ72093.1| GTP-binding protein [Lactobacillus ultunensis DSM 16047]
Length = 279
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 127/245 (51%), Gaps = 27/245 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + D++ L+D+++EV DARIP SS ++L + P I++LNK
Sbjct: 6 WYPGHMNKARNQLEDKLNLIDVLVEVLDARIPESSRNPMIEELVGNKP-----HIIILNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ-AHVRNLRKSD-YDASSD 141
DLA P KEW N ++S + N+++ + ++ A +K + AS+
Sbjct: 61 ADLADPNLTKEWAKKLSGANKYVLALDSLHNTNMQKLISLVKKASAEKTKKLEARGASNP 120
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
T+ + L GIPN GKS + N L +GR A V +PG TK LK ++ N
Sbjct: 121 TIRIALAGIPNCGKSTVINRL--VGRNVA---------EVGNKPGVTKGQRWLKTSA--N 167
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY-KKWAKF 260
I VLDTPGIL P+ D EV KLA GAI DS ++A + L N + Y K KF
Sbjct: 168 IQVLDTPGILWPKFSDQEVGYKLAAFGAIKDSVFHADDVALFVLE--NLREHYLKNLVKF 225
Query: 261 S-INQ 264
S +NQ
Sbjct: 226 SKLNQ 230
>gi|15903087|ref|NP_358637.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae R6]
gi|116515446|ref|YP_816493.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae D39]
gi|421266169|ref|ZP_15717051.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae SPAR27]
gi|15458663|gb|AAK99847.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076022|gb|ABJ53742.1| GTP-binding protein [Streptococcus pneumoniae D39]
gi|183217365|gb|ACC59284.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae]
gi|395867731|gb|EJG78852.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae SPAR27]
Length = 283
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + GI F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GINYFKEHY 218
>gi|433655064|ref|YP_007298772.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293253|gb|AGB19075.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 278
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 112/227 (49%), Gaps = 25/227 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA R I + + +VDI+ E+ DARIP SS D+L + +RI++LNK
Sbjct: 4 WYPGHMAKTKRLIEENLKIVDIVYELIDARIPKSSRNPLIDEL-----VKNKKRIILLNK 58
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
DL+ K W +F + S +NS N ++KE + N+ RK +
Sbjct: 59 ADLSDSAVNKMWNEYFKKLGIASLNINSLNSSSIKEIYELTLKECSNIIDRKRQKGIKA- 117
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS L NSL K + A +PG TK + + P
Sbjct: 118 KLRAMIVGIPNVGKSTLINSL-----------SKTKSAKTGNKPGVTK---AKQWIRTPY 163
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+LDTPGIL P+ D V LALT AI D + +ELA L IL
Sbjct: 164 FDLLDTPGILWPKFEDEHVGIMLALTAAIKDELLNHEELAFSLLKIL 210
>gi|149006185|ref|ZP_01829897.1| GTP-binding protein [Streptococcus pneumoniae SP18-BS74]
gi|194398607|ref|YP_002037767.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae G54]
gi|307127248|ref|YP_003879279.1| GTP-binding protein [Streptococcus pneumoniae 670-6B]
gi|417686456|ref|ZP_12335734.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41301]
gi|417698436|ref|ZP_12347608.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41317]
gi|418096244|ref|ZP_12733358.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA16531]
gi|418121196|ref|ZP_12758142.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44194]
gi|418131970|ref|ZP_12768845.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA11304]
gi|418148561|ref|ZP_12785326.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA13856]
gi|418159876|ref|ZP_12796575.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17227]
gi|419442580|ref|ZP_13982609.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA13224]
gi|419453088|ref|ZP_13993061.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae EU-NP03]
gi|419466560|ref|ZP_14006443.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA05248]
gi|419491047|ref|ZP_14030787.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47179]
gi|419506076|ref|ZP_14045737.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA49194]
gi|419512513|ref|ZP_14052147.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA05578]
gi|419516781|ref|ZP_14056399.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA02506]
gi|419521124|ref|ZP_14060719.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA05245]
gi|419532246|ref|ZP_14071762.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47794]
gi|421211230|ref|ZP_15668213.1| hypothetical protein AMCSP03_001248 [Streptococcus pneumoniae
2070035]
gi|421227359|ref|ZP_15684064.1| hypothetical protein AMCSP08_001176 [Streptococcus pneumoniae
2072047]
gi|421238652|ref|ZP_15695219.1| hypothetical protein AMCSP15_001218 [Streptococcus pneumoniae
2071247]
gi|421245048|ref|ZP_15701548.1| hypothetical protein AMCSP10_001018 [Streptococcus pneumoniae
2081685]
gi|421283311|ref|ZP_15734098.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA04216]
gi|147761962|gb|EDK68924.1| GTP-binding protein [Streptococcus pneumoniae SP18-BS74]
gi|194358274|gb|ACF56722.1| GTP-binding protein [Streptococcus pneumoniae G54]
gi|306484310|gb|ADM91179.1| GTP-binding protein [Streptococcus pneumoniae 670-6B]
gi|332076293|gb|EGI86759.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41301]
gi|332200481|gb|EGJ14553.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41317]
gi|353770156|gb|EHD50671.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA16531]
gi|353794023|gb|EHD74382.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44194]
gi|353807636|gb|EHD87905.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA11304]
gi|353813236|gb|EHD93469.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA13856]
gi|353821609|gb|EHE01785.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17227]
gi|379538424|gb|EHZ03604.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA05245]
gi|379544683|gb|EHZ09827.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA05248]
gi|379552928|gb|EHZ18016.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA13224]
gi|379594626|gb|EHZ59436.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47179]
gi|379606030|gb|EHZ70779.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47794]
gi|379607990|gb|EHZ72736.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA49194]
gi|379626797|gb|EHZ91413.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae EU-NP03]
gi|379636983|gb|EIA01541.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA05578]
gi|379640784|gb|EIA05323.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA02506]
gi|395573188|gb|EJG33779.1| hypothetical protein AMCSP03_001248 [Streptococcus pneumoniae
2070035]
gi|395595527|gb|EJG55758.1| hypothetical protein AMCSP08_001176 [Streptococcus pneumoniae
2072047]
gi|395601915|gb|EJG62060.1| hypothetical protein AMCSP15_001218 [Streptococcus pneumoniae
2071247]
gi|395608890|gb|EJG68981.1| hypothetical protein AMCSP10_001018 [Streptococcus pneumoniae
2081685]
gi|395881274|gb|EJG92323.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA04216]
Length = 283
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + GI F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GINYFKEHY 218
>gi|30021926|ref|NP_833557.1| ribosomal biogenesis GTPase [Bacillus cereus ATCC 14579]
gi|218236121|ref|YP_002368639.1| ribosomal biogenesis GTPase [Bacillus cereus B4264]
gi|228960054|ref|ZP_04121718.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|229047525|ref|ZP_04193115.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH676]
gi|229111309|ref|ZP_04240862.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock1-15]
gi|229129114|ref|ZP_04258087.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-Cer4]
gi|229146409|ref|ZP_04274780.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-ST24]
gi|229152037|ref|ZP_04280232.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus m1550]
gi|296504333|ref|YP_003666033.1| ribosomal biogenesis GTPase [Bacillus thuringiensis BMB171]
gi|423585753|ref|ZP_17561840.1| ribosome biogenesis GTPase A [Bacillus cereus VD045]
gi|423628931|ref|ZP_17604680.1| ribosome biogenesis GTPase A [Bacillus cereus VD154]
gi|423641081|ref|ZP_17616699.1| ribosome biogenesis GTPase A [Bacillus cereus VD166]
gi|423649701|ref|ZP_17625271.1| ribosome biogenesis GTPase A [Bacillus cereus VD169]
gi|423656697|ref|ZP_17631996.1| ribosome biogenesis GTPase A [Bacillus cereus VD200]
gi|81580508|sp|Q819W8.1|RBGA_BACCR RecName: Full=Ribosome biogenesis GTPase A
gi|29897482|gb|AAP10758.1| GTP-binding protein [Bacillus cereus ATCC 14579]
gi|218164078|gb|ACK64070.1| GTPase family protein [Bacillus cereus B4264]
gi|228631386|gb|EEK88020.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus m1550]
gi|228637042|gb|EEK93501.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-ST24]
gi|228654351|gb|EEL10216.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-Cer4]
gi|228672085|gb|EEL27376.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock1-15]
gi|228723772|gb|EEL75127.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH676]
gi|228799570|gb|EEM46523.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|296325385|gb|ADH08313.1| ribosomal biogenesis GTPase [Bacillus thuringiensis BMB171]
gi|401233099|gb|EJR39595.1| ribosome biogenesis GTPase A [Bacillus cereus VD045]
gi|401268476|gb|EJR74524.1| ribosome biogenesis GTPase A [Bacillus cereus VD154]
gi|401280142|gb|EJR86064.1| ribosome biogenesis GTPase A [Bacillus cereus VD166]
gi|401282981|gb|EJR88878.1| ribosome biogenesis GTPase A [Bacillus cereus VD169]
gi|401290438|gb|EJR96132.1| ribosome biogenesis GTPase A [Bacillus cereus VD200]
Length = 296
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 125/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +F ++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFKEKGHMAISINAQAGQGMKE----IAAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLK 222
Query: 258 AKFSINQI 265
++++N+I
Sbjct: 223 ERYNLNEI 230
>gi|418615525|ref|ZP_13178467.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU118]
gi|374816964|gb|EHR81155.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU118]
Length = 287
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 120/229 (52%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D + P R+++LNK
Sbjct: 5 WYPGHMAKAKRQVSEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK----EFLKFLQAHVRNLRKSDYDAS 139
D+ + + ++W T+F + V++ + N+K E +K Q R+
Sbjct: 60 KDMTNLKELEKWETYFKDEGFYPVAVDAKHGKNLKNVEVEAIKATQEKFD--REKAKGLK 117
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS L N L + + AE G +PG TK +K+
Sbjct: 118 PRAIRAMIVGIPNVGKSTLINKL---AKRSIAETGN--------KPGVTKQQQWIKVGK- 165
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
++ +LDTPGIL P+ D +V KL+LTGAI DS V E+A Y L +
Sbjct: 166 -SLQLLDTPGILWPKFEDEKVGKKLSLTGAIKDSIVHLDEVAIYGLNFM 213
>gi|229086391|ref|ZP_04218567.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-44]
gi|228696907|gb|EEL49716.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-44]
Length = 287
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 117/228 (51%), Gaps = 31/228 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +F+++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFEEKGHKAISINAQAGQGMKE----ITAACKVLVKEKFDKMIAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L
Sbjct: 165 KE--MELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYAL 210
>gi|423612055|ref|ZP_17587916.1| ribosome biogenesis GTPase A [Bacillus cereus VD107]
gi|401247062|gb|EJR53406.1| ribosome biogenesis GTPase A [Bacillus cereus VD107]
Length = 296
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 125/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +F ++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFKEKGHMAISINAQAGQGMKE----ITAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLK 222
Query: 258 AKFSINQI 265
++++N+I
Sbjct: 223 ERYNLNEI 230
>gi|423401320|ref|ZP_17378493.1| ribosome biogenesis GTPase A [Bacillus cereus BAG2X1-2]
gi|423457979|ref|ZP_17434776.1| ribosome biogenesis GTPase A [Bacillus cereus BAG5X2-1]
gi|423477976|ref|ZP_17454691.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6X1-1]
gi|401148363|gb|EJQ55856.1| ribosome biogenesis GTPase A [Bacillus cereus BAG5X2-1]
gi|401654310|gb|EJS71853.1| ribosome biogenesis GTPase A [Bacillus cereus BAG2X1-2]
gi|402428138|gb|EJV60235.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6X1-1]
Length = 296
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 125/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +F ++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFKEKGQMAISINAQAGQGMKE----IAAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLK 222
Query: 258 AKFSINQI 265
++++N+I
Sbjct: 223 DRYNLNEI 230
>gi|428312494|ref|YP_007123471.1| Ras superfamily GTP-binding protein YlqF [Microcoleus sp. PCC 7113]
gi|428254106|gb|AFZ20065.1| Ras superfamily GTP-binding protein YlqF [Microcoleus sp. PCC 7113]
Length = 290
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 122/230 (53%), Gaps = 27/230 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A R + +++ VD++LEVRDARIP S+ HHP S ++LVL
Sbjct: 8 WYPGHIAKAERELKEQLKRVDVVLEVRDARIPLST-------HHPQIPQWVGSKAKVLVL 60
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ-AHVR-NLRKSDYDAS 139
N++D+ +P + WI++F QQ ++ N+ ++E + Q A V+ N R+ D
Sbjct: 61 NRLDMITPAVRQLWISWFQQQGETAYFTNAQQGKGIREVSQATQSAGVQMNQRRRDRGMQ 120
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
V +++G PNVGKSAL N L +GR R + +PG T+ + ++I+
Sbjct: 121 PRPVRAVVIGFPNVGKSALINRL--LGR---------RVVDSARRPGVTRQLRWVRISDQ 169
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ +LD PG++P + + + KLA+ IGD+ + +A + +L
Sbjct: 170 --LELLDAPGVIPANLKNQQKAIKLAICDDIGDASYDNQRIAADLVELLQ 217
>gi|229104400|ref|ZP_04235069.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-28]
gi|228679098|gb|EEL33306.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-28]
Length = 296
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 116/228 (50%), Gaps = 31/228 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A KEWI +F ++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKEWIAYFKEKGHMAISINAQAGQGMKE----ITAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L
Sbjct: 165 KE--MELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYAL 210
>gi|229098307|ref|ZP_04229254.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-29]
gi|229117324|ref|ZP_04246702.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock1-3]
gi|407706297|ref|YP_006829882.1| chitin-binding protein [Bacillus thuringiensis MC28]
gi|423378323|ref|ZP_17355607.1| ribosome biogenesis GTPase A [Bacillus cereus BAG1O-2]
gi|423441431|ref|ZP_17418337.1| ribosome biogenesis GTPase A [Bacillus cereus BAG4X2-1]
gi|423448343|ref|ZP_17425222.1| ribosome biogenesis GTPase A [Bacillus cereus BAG5O-1]
gi|423464505|ref|ZP_17441273.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6O-1]
gi|423533847|ref|ZP_17510265.1| ribosome biogenesis GTPase A [Bacillus cereus HuB2-9]
gi|423540884|ref|ZP_17517275.1| ribosome biogenesis GTPase A [Bacillus cereus HuB4-10]
gi|423547122|ref|ZP_17523480.1| ribosome biogenesis GTPase A [Bacillus cereus HuB5-5]
gi|423623086|ref|ZP_17598864.1| ribosome biogenesis GTPase A [Bacillus cereus VD148]
gi|228666224|gb|EEL21688.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock1-3]
gi|228685205|gb|EEL39136.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-29]
gi|401128937|gb|EJQ36620.1| ribosome biogenesis GTPase A [Bacillus cereus BAG5O-1]
gi|401172072|gb|EJQ79293.1| ribosome biogenesis GTPase A [Bacillus cereus HuB4-10]
gi|401178843|gb|EJQ86016.1| ribosome biogenesis GTPase A [Bacillus cereus HuB5-5]
gi|401259859|gb|EJR66033.1| ribosome biogenesis GTPase A [Bacillus cereus VD148]
gi|401636589|gb|EJS54343.1| ribosome biogenesis GTPase A [Bacillus cereus BAG1O-2]
gi|402418092|gb|EJV50392.1| ribosome biogenesis GTPase A [Bacillus cereus BAG4X2-1]
gi|402420772|gb|EJV53043.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6O-1]
gi|402464066|gb|EJV95766.1| ribosome biogenesis GTPase A [Bacillus cereus HuB2-9]
gi|407383982|gb|AFU14483.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
MC28]
Length = 296
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 116/228 (50%), Gaps = 31/228 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A KEWI +F ++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKEWIAYFKEKGHMAISINAQAGQGMKE----ITAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L
Sbjct: 165 KE--MELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYAL 210
>gi|260893263|ref|YP_003239360.1| ribosome biogenesis GTP-binding protein YlqF [Ammonifex degensii
KC4]
gi|260865404|gb|ACX52510.1| ribosome biogenesis GTP-binding protein YlqF [Ammonifex degensii
KC4]
Length = 271
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 106/209 (50%), Gaps = 22/209 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A R + +PLV ++ E+ DARIP+SS + + R++VLNK DL
Sbjct: 5 WYPGHMVKARRLLRAHLPLVQVVFELLDARIPYSSRNPDIAEL--LAGKPRVVVLNKEDL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVM 146
A P + W+ + +++ P+ VNS + + + LR+ + + M
Sbjct: 63 ADPQATRAWLAYLEREGHPALAVNSLTGKGLNKLEE-------ALRRVAKPGRTGILRGM 115
Query: 147 LLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLD 206
++GIPNVGKS+ N L + R A V +PG TK +K+ PN +LD
Sbjct: 116 VVGIPNVGKSSFINRLV-----------RGRAAAVGAKPGVTKGKQWIKVT--PNFELLD 162
Query: 207 TPGILPPEIHDVEVCSKLALTGAIGDSFV 235
TPG+L P D EV KLA+TGA+ + +
Sbjct: 163 TPGVLWPRFEDPEVGLKLAVTGALKEEVI 191
>gi|400290291|ref|ZP_10792318.1| ribosomal biogenesis GTPase [Streptococcus ratti FA-1 = DSM 20564]
gi|399921082|gb|EJN93899.1| ribosomal biogenesis GTPase [Streptococcus ratti FA-1 = DSM 20564]
Length = 283
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 120/232 (51%), Gaps = 23/232 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+PFSS+ L R+++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKHVDFVTILVDARLPFSSQNPML--TKIVGDKPRLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEF----LKFLQAHVRNLRKSDYDASSDT 142
A ++ KEW +F+ Q + +NS + VK+ K + + + LR + +T
Sbjct: 64 ADGSRTKEWQDYFESQGITALAINSKEQSAVKKIGEAAKKLMASKLSKLR--ERGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KVAAVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D+ + E+ G+ F + Y
Sbjct: 169 EILDTPGILWPKFEDETVGLKLALTGAIKDNLLPMDEVT--IFGLNYFKENY 218
>gi|336395589|ref|ZP_08576988.1| putative GTP-binding protein [Lactobacillus farciminis KCTC 3681]
Length = 284
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 17/224 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A + DR+ LVDI+LE+ DAR+PFSS L + I++LNK DL
Sbjct: 5 WYPGHMNKAKNQVQDRLKLVDIVLEIVDARLPFSSRNPVL--EQIIDQKKHIIILNKSDL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV--RNLRKSDYDASSDTVT 144
A P +W F+Q+ S +++ + + + +++ + + R + + +
Sbjct: 63 ADPKITADWKLNFEQEGTNSIEIDAKHTKGMNKIKSMIRSELSEKIQRYENNGVQNYRIK 122
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M +GIPNVGKS + N L +G+ A K PG TK+ LK ++ I +
Sbjct: 123 AMCIGIPNVGKSTILNRL--VGKNVAVTGNK---------PGVTKNQNWLK--TNIGIDL 169
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
LDTPGIL P+I D +V KLAL+GAI D ++A Y L +
Sbjct: 170 LDTPGILWPKIDDPKVGMKLALSGAIKDKIYAPDDVAIYALNFM 213
>gi|417915454|ref|ZP_12559065.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
bv. 2 str. SK95]
gi|342834020|gb|EGU68296.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
bv. 2 str. SK95]
Length = 283
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 119/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P+ KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPSMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIKIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKEHY 218
>gi|407977608|ref|ZP_11158445.1| GTPase YlqF [Bacillus sp. HYC-10]
gi|407415861|gb|EKF37442.1| GTPase YlqF [Bacillus sp. HYC-10]
Length = 282
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 115/228 (50%), Gaps = 23/228 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+DI+ E+ DARIP SS +++ + P +I++LNK
Sbjct: 5 WFPGHMAKARREVTEKLKLIDIVFELTDARIPMSSRNPMIEEILQNKP-----KIMLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
D A P KEW F++Q S +NS + + + + + ++ R
Sbjct: 60 ADKADPRMTKEWQAHFEKQGVRSLAINSVDGQGLNQIITISKEILKEKFDRMKAKGVKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 120 AIRALIIGIPNVGKSTLINRL-----------AKRNIAKTGDRPGITTSQQWVKVGKE-- 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ +LDTPGIL P+ D +V +LA+TGAI DS + +++A Y L L
Sbjct: 167 LELLDTPGILWPKFEDEQVGLRLAVTGAIKDSIINLQDVAVYALRFLE 214
>gi|417793389|ref|ZP_12440667.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK255]
gi|334273117|gb|EGL91468.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK255]
Length = 283
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L + ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--NKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK K L A + +R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTNAAKKLMAD-KIVRQKERGIKIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F Y
Sbjct: 170 ILDTPGILCPKFEDDAVALKLALTGAIKDQLLPMDEVTIF--GLNYFKKHY 218
>gi|259046714|ref|ZP_05737115.1| ribosome biogenesis GTP-binding protein YlqF [Granulicatella
adiacens ATCC 49175]
gi|259036610|gb|EEW37865.1| ribosome biogenesis GTP-binding protein YlqF [Granulicatella
adiacens ATCC 49175]
Length = 286
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 133/255 (52%), Gaps = 31/255 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R +++ LVD+++E+ DARIP SS ++++ +++++LNK
Sbjct: 6 WFPGHMAKARREATEKLKLVDVVIEMVDARIPESSRNPIIEEIKGQK-----KQLILLNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEF---LKFLQAHV--RNLRKSDYDA 138
+DLA P+Q K W +F Q + + +K+ +K L A V +NL K
Sbjct: 61 VDLADPSQTKRWNDYFTSQGIKVLTTEAKDGKGIKQVKAAIKELMAPVFEKNLEKG---I 117
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
+ +M+LGIPNVGKS N + I + A + +PG TK LKI +
Sbjct: 118 RPRPIRLMVLGIPNVGKSTFINRM--INK---------NQAETANRPGVTKGQRWLKIGN 166
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWA 258
+ +LDTPGIL P+ EV +KLALTGAI D+ + ++A + L F +Y ++
Sbjct: 167 --DFELLDTPGILWPKFESEEVGNKLALTGAIKDALLHMDDIALFALS--QFKLDYPEYL 222
Query: 259 KFSINQINKPLTLHH 273
K + I+ L L +
Sbjct: 223 KKAYRLIDSDLELSN 237
>gi|358067000|ref|ZP_09153486.1| ribosome biogenesis GTP-binding protein YlqF [Johnsonella ignava
ATCC 51276]
gi|356694849|gb|EHI56504.1| ribosome biogenesis GTP-binding protein YlqF [Johnsonella ignava
ATCC 51276]
Length = 295
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 110/208 (52%), Gaps = 17/208 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A RAI + + +VDII+E+RDARIP +S + + R++VLNK DL
Sbjct: 5 WYPGHMTKAMRAIQEDIKIVDIIIEMRDARIPLASSNPDIAVLGQGKA--RVIVLNKSDL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD--ASSDTVT 144
++ K W +F +Q C +S K V++ + L+ + R+ D S+ V
Sbjct: 63 SNEQINKAWAQYFRKQGCSCIFADSRQKGVVRKLTELLEEASKAKRERDLKRGISNRPVR 122
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
++LGIPNVGKS L NS+ A KG A +PG TK +++ + + +
Sbjct: 123 AIVLGIPNVGKSTLINSI--------AGKG---SAKTGNKPGVTKGNQWIRL--NKQVEL 169
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGD 232
LDTPG+L P+I + E KLA G + D
Sbjct: 170 LDTPGMLMPKIENEETAVKLAFIGTVND 197
>gi|307709298|ref|ZP_07645756.1| conserved hypothetical protein [Streptococcus mitis SK564]
gi|307619881|gb|EFN98999.1| conserved hypothetical protein [Streptococcus mitis SK564]
Length = 283
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 119/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A+ + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAN-KIARQKERGIKIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKEHY 218
>gi|357014330|ref|ZP_09079329.1| RbgA [Paenibacillus elgii B69]
Length = 294
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 131/249 (52%), Gaps = 33/249 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A R I +++ L+D+ +E+ DAR+P SS D++ + P R+++LNK
Sbjct: 5 WFPGHMTRARRQIQEKLKLIDMAIELLDARVPLSSRNPMIDEILQNKP-----RLVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLK----FLQAHVR-NLRKSDYDA 138
DLA P + WI FF +Q + ++S + VKE ++ L ++ LRK
Sbjct: 60 HDLADPEVTRRWIEFFAEQGLKAIPIDSVGGNPVKEIMQRSKELLSEKIQAQLRKG---M 116
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
+ + +++GIPNVGKS L N + GR AA K PG TK +K+ +
Sbjct: 117 NPRAIRALIVGIPNVGKSTLINRMA--GRKIAATGDK---------PGVTKGQQWIKVGT 165
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKK 256
+ +LDTPGIL P+ D V +LA TGAI + + +E+A + + L ++ K+
Sbjct: 166 E--MELLDTPGILWPKFEDQSVGLRLAATGAIKEEILHVEEVALFAMRYLTEHYAQSVKE 223
Query: 257 WAKFSINQI 265
+F +N+I
Sbjct: 224 --RFGVNEI 230
>gi|423070343|ref|ZP_17059119.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius F0413]
gi|355365704|gb|EHG13424.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius F0413]
Length = 283
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 119/230 (51%), Gaps = 19/230 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+PFSS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPFSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A KEW +F+ Q+ + +NS + VK+ + ++ ++ R+ + +T+
Sbjct: 64 ADAHLTKEWQRYFENQDIKTLAINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIETLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPN GKS L N L GK + A +PG TK LK S+ ++ +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA----------GK-KIAVTGNKPGVTKGQQWLK--SNKDLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
LDTPGIL P+ + ++ KLALTGAI D + E+ GI F + Y
Sbjct: 171 LDTPGILWPKFEEADIALKLALTGAIKDDVLPMDEVT--IFGINYFKEHY 218
>gi|450164201|ref|ZP_21881202.1| ribosomal biogenesis GTPase [Streptococcus mutans B]
gi|449242281|gb|EMC40879.1| ribosomal biogenesis GTPase [Streptococcus mutans B]
Length = 283
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 117/221 (52%), Gaps = 17/221 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIIGDKPKLIILNKVDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A T EW FF++Q + VNS + VK+ + + + + ++ + +T+
Sbjct: 64 ADSTCTAEWCNFFEKQGIKALAVNSKEQSAVKKVTEVAKGLMTDKLVKLRERGIQKETLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPNVGKS L N L GK + A V +PG TK LK S+ N+ +
Sbjct: 124 TMIVGIPNVGKSTLMNRLA----------GK-KIAIVGNKPGVTKGQQWLK--SNKNLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
LDTPGIL P+ + V KLA+TGAI D+ + E+ + L
Sbjct: 171 LDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIFGL 211
>gi|27467839|ref|NP_764476.1| ribosomal biogenesis GTPase [Staphylococcus epidermidis ATCC 12228]
gi|251810676|ref|ZP_04825149.1| GTP-binding protein [Staphylococcus epidermidis BCM-HMP0060]
gi|282876323|ref|ZP_06285190.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis SK135]
gi|293366791|ref|ZP_06613467.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis M23864:W2(grey)]
gi|417656693|ref|ZP_12306376.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU028]
gi|417659010|ref|ZP_12308623.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU045]
gi|417909938|ref|ZP_12553671.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU037]
gi|417913333|ref|ZP_12557000.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU109]
gi|418605315|ref|ZP_13168640.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU041]
gi|418607736|ref|ZP_13170959.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU057]
gi|418609824|ref|ZP_13172958.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU065]
gi|418616549|ref|ZP_13179473.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU120]
gi|418622162|ref|ZP_13184918.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU123]
gi|418624370|ref|ZP_13187045.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU125]
gi|418628990|ref|ZP_13191506.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU127]
gi|418664729|ref|ZP_13226195.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU081]
gi|419768058|ref|ZP_14294195.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-250]
gi|419770965|ref|ZP_14297027.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-K]
gi|420165219|ref|ZP_14671923.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM088]
gi|420169786|ref|ZP_14676364.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM070]
gi|420172756|ref|ZP_14679254.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM067]
gi|420182914|ref|ZP_14689047.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM049]
gi|420187551|ref|ZP_14693571.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM039]
gi|420194018|ref|ZP_14699847.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM021]
gi|420197136|ref|ZP_14702860.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM020]
gi|420202042|ref|ZP_14707637.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM018]
gi|420206436|ref|ZP_14711946.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM008]
gi|420209477|ref|ZP_14714914.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM003]
gi|420214276|ref|ZP_14719555.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH05005]
gi|420216106|ref|ZP_14721328.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH05001]
gi|420220026|ref|ZP_14725016.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH04008]
gi|420221964|ref|ZP_14726889.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH08001]
gi|420224827|ref|ZP_14729665.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH06004]
gi|420227035|ref|ZP_14731808.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH05003]
gi|420229358|ref|ZP_14734064.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH04003]
gi|420231716|ref|ZP_14736361.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH051668]
gi|421607254|ref|ZP_16048500.1| GTPase YlqF [Staphylococcus epidermidis AU12-03]
gi|27315384|gb|AAO04518.1|AE016747_15 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|251805836|gb|EES58493.1| GTP-binding protein [Staphylococcus epidermidis BCM-HMP0060]
gi|281295348|gb|EFA87875.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis SK135]
gi|291319092|gb|EFE59462.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis M23864:W2(grey)]
gi|329736354|gb|EGG72626.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU028]
gi|329736649|gb|EGG72915.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU045]
gi|341652547|gb|EGS76335.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU037]
gi|341655615|gb|EGS79339.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU109]
gi|374402412|gb|EHQ73437.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU041]
gi|374403853|gb|EHQ74848.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU057]
gi|374406160|gb|EHQ77063.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU065]
gi|374410175|gb|EHQ80936.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU081]
gi|374820627|gb|EHR84703.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU120]
gi|374827537|gb|EHR91399.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU123]
gi|374827599|gb|EHR91460.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU125]
gi|374834984|gb|EHR98615.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU127]
gi|383360979|gb|EID38362.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-250]
gi|383362514|gb|EID39866.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-K]
gi|394236386|gb|EJD81920.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM088]
gi|394241433|gb|EJD86847.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM067]
gi|394243086|gb|EJD88460.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM070]
gi|394249377|gb|EJD94590.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM049]
gi|394255993|gb|EJE00929.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM039]
gi|394265943|gb|EJE10589.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM020]
gi|394266716|gb|EJE11341.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM021]
gi|394270015|gb|EJE14538.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM018]
gi|394278275|gb|EJE22592.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM008]
gi|394278924|gb|EJE23236.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM003]
gi|394283641|gb|EJE27806.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH05005]
gi|394287033|gb|EJE31007.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH04008]
gi|394289995|gb|EJE33865.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH08001]
gi|394292556|gb|EJE36298.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH05001]
gi|394294230|gb|EJE37916.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH06004]
gi|394297536|gb|EJE41133.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH05003]
gi|394299124|gb|EJE42675.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH04003]
gi|394302258|gb|EJE45706.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH051668]
gi|406657046|gb|EKC83439.1| GTPase YlqF [Staphylococcus epidermidis AU12-03]
Length = 287
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 119/229 (51%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D + P R+++LNK
Sbjct: 5 WYPGHMAKAKRQVSEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK----EFLKFLQAHVRNLRKSDYDAS 139
D+ + + ++W +F + V++ + N+K E +K Q R+
Sbjct: 60 KDMTNLKELEKWEIYFKNEGFYPVAVDAKHGKNLKNVEVEAIKATQEKFD--REKAKGLK 117
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS L N L + + AE G +PG TK +K+
Sbjct: 118 PRAIRAMIVGIPNVGKSTLINKL---AKRSIAETGN--------KPGVTKQQQWIKVGK- 165
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
++ +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L +
Sbjct: 166 -SLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFM 213
>gi|49478407|ref|YP_037899.1| ribosomal biogenesis GTPase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49329963|gb|AAT60609.1| conserved hypothetical protein, GTPase family [Bacillus
thuringiensis serovar konkukian str. 97-27]
Length = 296
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 125/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +F ++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFKEKGHMAISINAQAGQGMKE----IAAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
++ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRSIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLK 222
Query: 258 AKFSINQI 265
++++N I
Sbjct: 223 ERYNLNDI 230
>gi|403667643|ref|ZP_10932943.1| hypothetical protein KJC8E_02657 [Kurthia sp. JC8E]
Length = 284
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 128/269 (47%), Gaps = 33/269 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + + + LVDI+ E+ DAR+P SS L R+L+LNK D+
Sbjct: 5 WFPGHMAKARRQVTENLKLVDIVFELIDARLPMSSRNPML--DEIIHQKNRLLILNKADM 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLK----FLQAHVRNLRKSDYDASSDT 142
A Q K+WI +F+ + + VNS + +K K L +R +
Sbjct: 63 ADEVQTKKWIAYFESKGHRAIAVNSLDSKGLKRVTKAAEEVLAEKWERMRSKGLKPRA-- 120
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS + N L K A PG T+ +K+ +
Sbjct: 121 IRAMIVGIPNVGKSTMINRL-----------AKKNIARTGNMPGVTRSQQWIKVGKQ--L 167
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY---KKWAK 259
+LDTPGIL P+ D V KLA+TGAI D+ + +LA + L F +EY + +
Sbjct: 168 ELLDTPGILWPKFEDPRVGYKLAVTGAIKDAIMNMDDLAIFG---LQFLEEYYPKRLHER 224
Query: 260 FSINQINKPL--TLHH----KADQSSGSE 282
+ I + P+ T H + +SSG E
Sbjct: 225 YQIEGLTDPIVGTFDHIGRLRHMKSSGGE 253
>gi|423615901|ref|ZP_17591735.1| ribosome biogenesis GTPase A [Bacillus cereus VD115]
gi|401260438|gb|EJR66611.1| ribosome biogenesis GTPase A [Bacillus cereus VD115]
Length = 296
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 116/228 (50%), Gaps = 31/228 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A KEWI +F ++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKEWIAYFKEKGHMAISINAQAGQGMKE----ITAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L
Sbjct: 165 KE--MELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYAL 210
>gi|409387361|ref|ZP_11239591.1| 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Lactococcus raffinolactis 4877]
gi|399205462|emb|CCK20506.1| 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Lactococcus raffinolactis 4877]
Length = 291
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 127/247 (51%), Gaps = 25/247 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM+ A R + + + VD+++E+ DAR+P SS D++ P R++++NK
Sbjct: 6 WFPGHMSKARRQVQENLKHVDLVMELVDARLPLSSRNPMLDKIIGTKP-----RLVIINK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV--RNLRKSDYDASSD 141
DL + ++W+ +F+ Q + +N+ + VK+ K + + + R S+ +
Sbjct: 61 KDLGDDLEIQKWVHYFEAQGILAVKINAKEQQTVKKLTKAAKEVLAEKLKRASERGIQNK 120
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS L N L GK + A +PG TK LK ++
Sbjct: 121 AIRTMIIGIPNVGKSTLMNRLA----------GK-KIAITGNKPGVTKGQQWLK--TNEE 167
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKKWAK 259
+ +LDTPGIL P+ D V KLALTGAI D + E+ + L N+ E +K K
Sbjct: 168 LEILDTPGILWPKFEDQRVGLKLALTGAIKDDLIPKDEITIFGLDFFKANYPTELQKRFK 227
Query: 260 FSINQIN 266
+ Q++
Sbjct: 228 LTDEQMS 234
>gi|251782422|ref|YP_002996724.1| ribosomal biogenesis GTPase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242391051|dbj|BAH81510.1| GTP-binding protein [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
Length = 282
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 116/223 (52%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A T+ KEW +++ Q + +NS + VK E K L A ++ LR D +T
Sbjct: 64 ADATRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEAAKELMADKIKRLR--DRGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS L N L GK + A V +PG TK LK S+ +
Sbjct: 122 LRTMIIGIPNVGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D V KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|148998410|ref|ZP_01825852.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP11-BS70]
gi|225861096|ref|YP_002742605.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae Taiwan19F-14]
gi|298230995|ref|ZP_06964676.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298255437|ref|ZP_06979023.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298502842|ref|YP_003724782.1| GTP-binding protein [Streptococcus pneumoniae TCH8431/19A]
gi|307067683|ref|YP_003876649.1| putative GTPase [Streptococcus pneumoniae AP200]
gi|387788308|ref|YP_006253376.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae ST556]
gi|417312595|ref|ZP_12099307.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA04375]
gi|418076302|ref|ZP_12713540.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47502]
gi|418083062|ref|ZP_12720262.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44288]
gi|418085205|ref|ZP_12722387.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47281]
gi|418093850|ref|ZP_12730979.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA49138]
gi|418100194|ref|ZP_12737282.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 7286-06]
gi|418119865|ref|ZP_12756816.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA18523]
gi|418141608|ref|ZP_12778421.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA13455]
gi|418150615|ref|ZP_12787364.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA14798]
gi|418152758|ref|ZP_12789498.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA16121]
gi|418157500|ref|ZP_12794216.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA16833]
gi|418164416|ref|ZP_12801088.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17371]
gi|418171346|ref|ZP_12807971.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA19451]
gi|418195374|ref|ZP_12831854.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47688]
gi|418197961|ref|ZP_12834423.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47778]
gi|418223113|ref|ZP_12849755.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 5185-06]
gi|418227602|ref|ZP_12854221.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 3063-00]
gi|419425160|ref|ZP_13965358.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 7533-05]
gi|419427112|ref|ZP_13967295.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 5652-06]
gi|419429290|ref|ZP_13969457.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA11856]
gi|419436003|ref|ZP_13976095.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 8190-05]
gi|419438236|ref|ZP_13978306.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA13499]
gi|419444653|ref|ZP_13984668.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA19923]
gi|419446789|ref|ZP_13986794.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 7879-04]
gi|419448772|ref|ZP_13988769.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 4075-00]
gi|419451475|ref|ZP_13991461.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae EU-NP02]
gi|419501748|ref|ZP_14041434.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47628]
gi|419518929|ref|ZP_14058536.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA08825]
gi|419528549|ref|ZP_14068091.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA17719]
gi|421234138|ref|ZP_15690759.1| hypothetical protein AMCSP02_001139 [Streptococcus pneumoniae
2061617]
gi|421249446|ref|ZP_15705906.1| hypothetical protein AMCSP19_001070 [Streptococcus pneumoniae
2082239]
gi|421287527|ref|ZP_15738293.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA58771]
gi|421314308|ref|ZP_15764898.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47562]
gi|147755807|gb|EDK62852.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP11-BS70]
gi|225726497|gb|ACO22348.1| GTP-binding protein [Streptococcus pneumoniae Taiwan19F-14]
gi|298238437|gb|ADI69568.1| GTP-binding protein [Streptococcus pneumoniae TCH8431/19A]
gi|306409220|gb|ADM84647.1| Predicted GTPase [Streptococcus pneumoniae AP200]
gi|327389303|gb|EGE87648.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA04375]
gi|353749429|gb|EHD30074.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47502]
gi|353756091|gb|EHD36693.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44288]
gi|353757160|gb|EHD37754.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47281]
gi|353765726|gb|EHD46268.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA49138]
gi|353772903|gb|EHD53402.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 7286-06]
gi|353788978|gb|EHD69374.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA18523]
gi|353805859|gb|EHD86133.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA13455]
gi|353815399|gb|EHD95617.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA14798]
gi|353819403|gb|EHD99601.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA16121]
gi|353823948|gb|EHE04122.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA16833]
gi|353831693|gb|EHE11818.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17371]
gi|353835863|gb|EHE15954.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA19451]
gi|353861901|gb|EHE41834.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47688]
gi|353863701|gb|EHE43623.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47778]
gi|353879731|gb|EHE59554.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 5185-06]
gi|353883203|gb|EHE63012.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 3063-00]
gi|379138050|gb|AFC94841.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae ST556]
gi|379538241|gb|EHZ03422.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA13499]
gi|379551238|gb|EHZ16333.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA11856]
gi|379564572|gb|EHZ29568.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA17719]
gi|379572346|gb|EHZ37303.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA19923]
gi|379602109|gb|EHZ66881.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47628]
gi|379614329|gb|EHZ79039.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 7879-04]
gi|379615845|gb|EHZ80550.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 8190-05]
gi|379618565|gb|EHZ83240.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 5652-06]
gi|379620047|gb|EHZ84713.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 7533-05]
gi|379623180|gb|EHZ87814.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae EU-NP02]
gi|379623830|gb|EHZ88463.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 4075-00]
gi|379641908|gb|EIA06443.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA08825]
gi|395601894|gb|EJG62040.1| hypothetical protein AMCSP02_001139 [Streptococcus pneumoniae
2061617]
gi|395614067|gb|EJG74089.1| hypothetical protein AMCSP19_001070 [Streptococcus pneumoniae
2082239]
gi|395889936|gb|EJH00943.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA58771]
gi|395914808|gb|EJH25652.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47562]
Length = 283
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--IKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + GI F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GINYFKEHY 218
>gi|37523435|ref|NP_926812.1| ribosomal biogenesis GTPase [Gloeobacter violaceus PCC 7421]
gi|35214439|dbj|BAC91807.1| glr3866 [Gloeobacter violaceus PCC 7421]
Length = 296
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 114/210 (54%), Gaps = 19/210 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMD 85
WY H+A A R +A+++ VD++LEV DARI SS D+++ + R R++VLN+ D
Sbjct: 11 WYPGHIAKARRQLAEQLKQVDLVLEVLDARIAHSSRHDEIQK---LAGERPRLVVLNRAD 67
Query: 86 LASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDASSDTV 143
+ + W+ +F + ++ N+ N D V+ LK Q A N R++ V
Sbjct: 68 MIPQGMLRSWLKWFAARGEAAYPTNAQNGDGVRAVLKAAQQGAVAVNQRRAGRGMRPRAV 127
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
V ++G PNVGKSAL N L +G+ R + +PG T+ + ++IA I
Sbjct: 128 RVAVIGFPNVGKSALINRL--VGK---------RAVESAAKPGVTRALRWVRIAD--VID 174
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDS 233
+LD+PGILPP ++D +KLA+ IG +
Sbjct: 175 LLDSPGILPPRLNDQRAAAKLAICDDIGQA 204
>gi|177656002|ref|ZP_02937129.1| GTPase family protein [Bacillus anthracis str. A0174]
gi|254735876|ref|ZP_05193582.1| ribosomal biogenesis GTPase [Bacillus anthracis str. Western North
America USA6153]
gi|172079901|gb|EDT65009.1| GTPase family protein [Bacillus anthracis str. A0174]
Length = 296
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 124/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +F ++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADARLTKQWIAYFKEKGHMAISINAQAGQGMKE----IAAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRVIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLK 222
Query: 258 AKFSINQI 265
++++N I
Sbjct: 223 ERYNLNDI 230
>gi|315038208|ref|YP_004031776.1| GTP binding protein [Lactobacillus amylovorus GRL 1112]
gi|325956662|ref|YP_004292074.1| GTP binding protein [Lactobacillus acidophilus 30SC]
gi|385817547|ref|YP_005853937.1| GTP binding protein [Lactobacillus amylovorus GRL1118]
gi|312276341|gb|ADQ58981.1| GTP binding protein [Lactobacillus amylovorus GRL 1112]
gi|325333227|gb|ADZ07135.1| GTP binding protein [Lactobacillus acidophilus 30SC]
gi|327183485|gb|AEA31932.1| GTP binding protein [Lactobacillus amylovorus GRL1118]
Length = 279
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 124/241 (51%), Gaps = 26/241 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + D+M L+D+++EV DARIP +S ++L + P I++LNK
Sbjct: 6 WYPGHMNKARNQLEDKMGLIDVLVEVLDARIPEASRNPMIEELVGNKP-----HIIILNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDASSD 141
DLA P KEW + + ++S + N+++ + ++ A + + AS+
Sbjct: 61 ADLADPALTKEWAKKLNGPDKYVLALDSLHNTNMQKLISLVKKAASEKTKKLEARGASNP 120
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
T+ + L GIPN GKS + N L +GR A V +PG TK LK ++ N
Sbjct: 121 TIRIALTGIPNCGKSTVINRL--VGR---------NVAEVGNKPGVTKGQKWLKTSA--N 167
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY-KKWAKF 260
I VLDTPGIL P+ D EV KLA GAI DS ++A Y L N + Y K KF
Sbjct: 168 IQVLDTPGILWPKFSDQEVGYKLAAFGAIKDSVFHADDVALYVLK--NLREYYAKDLVKF 225
Query: 261 S 261
S
Sbjct: 226 S 226
>gi|417910786|ref|ZP_12554502.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU105]
gi|341654974|gb|EGS78710.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU105]
Length = 287
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 119/229 (51%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D + P R+++LNK
Sbjct: 5 WYPGHMAKAKRQVSEQLKKVDVVFELVDARIPYSSRNPMIDYVIKQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK----EFLKFLQAHVRNLRKSDYDAS 139
D+ + + ++W +F + V++ + N+K E +K Q R+
Sbjct: 60 KDMTNLKELEKWEIYFKNEGFYPVAVDAKHGKNLKNVEVEAIKATQEKFD--REKAKGLK 117
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS L N L + + AE G +PG TK +K+
Sbjct: 118 PRAIRAMIVGIPNVGKSTLINKL---AKRSIAETGN--------KPGVTKQQQWIKVGK- 165
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
++ +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L +
Sbjct: 166 -SLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFM 213
>gi|402881899|ref|XP_003904496.1| PREDICTED: mitochondrial GTPase 1 isoform 1 [Papio anubis]
Length = 334
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 119/228 (52%), Gaps = 17/228 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA + + + LVD I+EV DARIP S F + P +LVLNK
Sbjct: 30 WFPGHMAKGLKKMKSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKP-----HLLVLNK 84
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYDASSDT 142
MDLA T+ ++ + + + + + KD NVK+ + + + + +
Sbjct: 85 MDLADLTEQQKIMQRLEGEGLKNVIFTNCLKDENVKQIIPMV-TELMGSSPRYHRGENLE 143
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPN 201
+M++G+PNVGKS+L NSL R KGK A V +PG T+ + S ++++ P
Sbjct: 144 YCIMVIGVPNVGKSSLINSL----RRQHLRKGK--AARVGGEPGITRAVMSRIQVSERPL 197
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+++LDTPG+L P I VE KLAL G + D VG + +A Y L LN
Sbjct: 198 MFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLFTLN 245
>gi|403259229|ref|XP_003922123.1| PREDICTED: mitochondrial GTPase 1 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 334
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 125/241 (51%), Gaps = 17/241 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA + + + + LVD I+EV DARIP S F + P +LVLNK
Sbjct: 30 WFPGHMAKGLKKMQNSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKP-----HLLVLNK 84
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYDASSDT 142
MDLA T+ ++ + + + + + KD +V++ + + + + + + +
Sbjct: 85 MDLADLTEQQKIMQRLEGEGLKNVVFTNCVKDESVQQIIPTVTELIESSHRY-HRGENLE 143
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPN 201
+M++G+PNVGKS+L NSL + GK + V QPG T+ + S ++++ P
Sbjct: 144 YCIMVIGVPNVGKSSLINSLRR------QHLGKGKATRVGGQPGITRAVMSRIQVSERPL 197
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
+++LDTPG+L P I VE KLAL G + D VG + +A Y L LN ++ +
Sbjct: 198 MFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLNRHQRFEYVQHYG 257
Query: 262 I 262
+
Sbjct: 258 L 258
>gi|386362702|ref|YP_006072033.1| ribosome biogenesis GTPase A [Streptococcus pyogenes Alab49]
gi|350277111|gb|AEQ24479.1| ribosome biogenesis GTPase A [Streptococcus pyogenes Alab49]
Length = 282
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 119/232 (51%), Gaps = 24/232 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A T+ KEW +++ Q + +NS + VK E K L A ++ LR D +T
Sbjct: 64 ADATRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEAAKELMADKIKRLR--DRGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + LN+ EY
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFG---LNYFREY 217
>gi|149025508|ref|ZP_01836441.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP23-BS72]
gi|418102736|ref|ZP_12739811.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae NP070]
gi|419475537|ref|ZP_14015377.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA14688]
gi|419486690|ref|ZP_14026455.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA44128]
gi|421209001|ref|ZP_15666017.1| hypothetical protein AMCSP11_001185 [Streptococcus pneumoniae
2070005]
gi|421225031|ref|ZP_15681771.1| hypothetical protein AMCSP06_001164 [Streptococcus pneumoniae
2070768]
gi|421240691|ref|ZP_15697237.1| hypothetical protein AMCSP17_001092 [Streptococcus pneumoniae
2080913]
gi|147929380|gb|EDK80377.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP23-BS72]
gi|353776224|gb|EHD56702.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae NP070]
gi|379561082|gb|EHZ26103.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA14688]
gi|379587323|gb|EHZ52172.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA44128]
gi|395574206|gb|EJG34786.1| hypothetical protein AMCSP11_001185 [Streptococcus pneumoniae
2070005]
gi|395589726|gb|EJG50042.1| hypothetical protein AMCSP06_001164 [Streptococcus pneumoniae
2070768]
gi|395608482|gb|EJG68576.1| hypothetical protein AMCSP17_001092 [Streptococcus pneumoniae
2080913]
Length = 283
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 117/231 (50%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIQIETF 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + GI F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GINYFKEHY 218
>gi|220928166|ref|YP_002505075.1| GTP1/OBG protein [Clostridium cellulolyticum H10]
gi|219998494|gb|ACL75095.1| GTP1/OBG protein [Clostridium cellulolyticum H10]
Length = 292
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 129/268 (48%), Gaps = 35/268 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA R IA+ + LVD+I+E+ DARIPFSS E + L + P R++ NK
Sbjct: 5 WFPGHMAKTRRLIAENLKLVDVIIELLDARIPFSSRNPEINSLIKNKP-----RLVAFNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL------RKSDYD 137
DLA ++WI ++ Q +NS N + E ++A R L R
Sbjct: 60 SDLADERISRQWIKWYADQGIDCILINSINGKGLNE----IKAKARELMFEKIERNRAKG 115
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
V M++GIPNVGKS+ N + +G+ TA +PG T+ ++I+
Sbjct: 116 KLFTPVRTMVVGIPNVGKSSFINKI--VGKATAV---------TGDRPGVTRGKQWIRIS 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYK 255
S + +LDTPGIL P+ D EV LA TGAI D + E+A L L+ +++E
Sbjct: 165 SE--MELLDTPGILWPKFEDQEVGMNLAFTGAIKDDIMDTGEVAMALLYRLSKTYNNELC 222
Query: 256 KWAKFSINQIN--KPLTLHHKADQSSGS 281
K IN +PL L + G
Sbjct: 223 TRFKLEPESINGMEPLELLETVGRKRGC 250
>gi|433462620|ref|ZP_20420197.1| ribosomal biogenesis GTPase [Halobacillus sp. BAB-2008]
gi|432188568|gb|ELK45749.1| ribosomal biogenesis GTPase [Halobacillus sp. BAB-2008]
Length = 280
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 111/221 (50%), Gaps = 17/221 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA A R A+++ LVD ++E+ DAR PFSS+ L H +++VL K DL
Sbjct: 5 WYPGHMAKAKREAAEKLKLVDFVIELVDARAPFSSQNPML--HEILQEKPKMIVLMKKDL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN-LRKSDYDASSDTVT- 144
A P + EWI +F+ + P+ + ++ K +V+ ++ + R L K +
Sbjct: 63 ADPQKTAEWIEYFEASSIPAVAIEANKKQDVQRVVQKAKELGREKLEKLKAKGVRPRASR 122
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M+LGIPNVGKS L N L + A +PG T +K+ +
Sbjct: 123 AMILGIPNVGKSTLINRL-----------ANKKMAKTGDKPGVTTKQQWIKVKKE--FEL 169
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
LDTPGIL P+ + EV +LA G I D + +++A Y L
Sbjct: 170 LDTPGILWPKFEEEEVGYRLAAIGTIKDQILPKEDVAAYVL 210
>gi|229019033|ref|ZP_04175874.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1273]
gi|229025279|ref|ZP_04181699.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1272]
gi|423389855|ref|ZP_17367081.1| ribosome biogenesis GTPase A [Bacillus cereus BAG1X1-3]
gi|423418255|ref|ZP_17395344.1| ribosome biogenesis GTPase A [Bacillus cereus BAG3X2-1]
gi|228736032|gb|EEL86607.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1272]
gi|228742273|gb|EEL92432.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1273]
gi|401106528|gb|EJQ14489.1| ribosome biogenesis GTPase A [Bacillus cereus BAG3X2-1]
gi|401641946|gb|EJS59663.1| ribosome biogenesis GTPase A [Bacillus cereus BAG1X1-3]
Length = 296
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 124/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +F ++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFKEKGHKAISINAQAGQGMKE----IAAACKILVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLK 222
Query: 258 AKFSINQI 265
++++N I
Sbjct: 223 ERYNLNDI 230
>gi|450044537|ref|ZP_21837905.1| ribosomal biogenesis GTPase [Streptococcus mutans N34]
gi|450086473|ref|ZP_21853668.1| ribosomal biogenesis GTPase [Streptococcus mutans NV1996]
gi|450131251|ref|ZP_21869361.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML8]
gi|450175972|ref|ZP_21885493.1| ribosomal biogenesis GTPase [Streptococcus mutans SM1]
gi|449153988|gb|EMB57611.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML8]
gi|449201504|gb|EMC02495.1| ribosomal biogenesis GTPase [Streptococcus mutans N34]
gi|449219431|gb|EMC19398.1| ribosomal biogenesis GTPase [Streptococcus mutans NV1996]
gi|449245886|gb|EMC44207.1| ribosomal biogenesis GTPase [Streptococcus mutans SM1]
Length = 283
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 118/221 (53%), Gaps = 17/221 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L + ++++LNK+DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIIGNKPKLIILNKVDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A T EW FF++Q + VNS + VK+ + + + + ++ + +T+
Sbjct: 64 ADSTCTAEWCNFFEKQGIKALAVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPNVGKS L N L GK + A V +PG TK LK S+ N+ +
Sbjct: 124 TMIVGIPNVGKSTLMNRLA----------GK-KIAIVGNKPGVTKGQQWLK--SNKNLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
LDTPGIL P+ + V KLA+TGAI D+ + E+ + L
Sbjct: 171 LDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIFGL 211
>gi|365902731|ref|ZP_09440554.1| GTPase [Lactobacillus malefermentans KCTC 3548]
Length = 287
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 113/223 (50%), Gaps = 24/223 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++PLVDI+ E+ DARIP SS E +L P ++V+ K
Sbjct: 6 WFPGHMAKAIRQVEEKLPLVDIVFELVDARIPLSSRNPELKRLMKDKP-----HLIVMTK 60
Query: 84 MDLASPTQFKEWITFF-DQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASS 140
MDLA P K+WI +F ++ + ++S VK K ++ + + + +
Sbjct: 61 MDLADPEMTKKWIAYFKNEVGVRAIAIDSKANITVKNITKITESILADKLAHEEEKGLKE 120
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ M +GIPNVGKS L N L + R + A V PG TK L+ S
Sbjct: 121 RPIRAMTIGIPNVGKSTLLNRL--VNR---------KVAQVGDTPGVTKGQQWLR--SSK 167
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
+ +LDTPGIL P+ D E KLALTGAI D ++A +
Sbjct: 168 KLELLDTPGILWPKFEDPETGQKLALTGAIKDQRFASDDVALF 210
>gi|306825208|ref|ZP_07458550.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
oral taxon 071 str. 73H25AP]
gi|304432644|gb|EFM35618.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
oral taxon 071 str. 73H25AP]
Length = 301
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L + ++L+LNK DL
Sbjct: 24 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--NKIVGDKPKLLILNKADL 81
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 82 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIKIETL 140
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 141 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 187
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F Y
Sbjct: 188 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKKHY 236
>gi|113476888|ref|YP_722949.1| ribosomal biogenesis GTPase [Trichodesmium erythraeum IMS101]
gi|110167936|gb|ABG52476.1| Ras superfamily GTP-binding protein YlqF [Trichodesmium erythraeum
IMS101]
Length = 285
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 117/226 (51%), Gaps = 17/226 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H+A A R + +++ VD++LEVRDARIP ++ Q+ S ++LV+N++D+
Sbjct: 5 WYPGHIAKAERNLKEQLKRVDVVLEVRDARIPLATRHPQV--SEWVGSKAQVLVINRIDM 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVR--NLRKSDYDASSDTVT 144
S K W +F+ + N+ D VK K ++ R NLR+ D V
Sbjct: 63 ISSEVMKIWTEWFEANGEMPYFTNAQLGDGVKNLAKAVREAGRAVNLRRRDRGMLPRPVR 122
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
+++G PNVGKSAL N L + + +A + PG TK + ++I+ I +
Sbjct: 123 AVVIGFPNVGKSALINRLLKRKVVESARR-----------PGVTKQLRWVRISDE--IEL 169
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNF 250
LD PG++P +I + E KLA+ IGD+ +++A + L F
Sbjct: 170 LDAPGVIPSQIKNREDAIKLAICEDIGDAAYDNQQVAASMIDFLTF 215
>gi|417940352|ref|ZP_12583640.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK313]
gi|343389233|gb|EGV01818.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK313]
Length = 317
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L + ++L+LNK DL
Sbjct: 40 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--NKIVGDKPKLLILNKADL 97
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 98 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIQIETL 156
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 157 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 203
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F Y
Sbjct: 204 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKKHY 252
>gi|300116300|ref|NP_001177846.1| mitochondrial GTPase 1 [Macaca mulatta]
gi|380817946|gb|AFE80847.1| mitochondrial GTPase 1 precursor [Macaca mulatta]
gi|383422837|gb|AFH34632.1| mitochondrial GTPase 1 precursor [Macaca mulatta]
gi|384950308|gb|AFI38759.1| mitochondrial GTPase 1 precursor [Macaca mulatta]
Length = 334
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 122/232 (52%), Gaps = 25/232 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA + + + LVD I+EV DARIP S F + P +LVLNK
Sbjct: 30 WFPGHMAKGLKKMKSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKP-----HLLVLNK 84
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFL----KFLQAHVRNLRKSDYDA 138
MDLA T+ ++ + + + + + KD NVK+ + + + + R R + +
Sbjct: 85 MDLADLTEQQKIMQRLEGEGLKNVIFTNCLKDENVKQIIPMVTELMGSSPRYHRGENLE- 143
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIA 197
+M++G+PNVGKS+L NSL R KGK A V +PG T+ + S ++++
Sbjct: 144 ----YCIMVIGVPNVGKSSLINSL----RRQHLRKGK--AARVGGEPGITRAVMSRIQVS 193
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
P +++LDTPG+L P I VE KLAL G + D VG + +A Y L LN
Sbjct: 194 ERPLMFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLFTLN 245
>gi|385261963|ref|ZP_10040078.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
SK643]
gi|385191704|gb|EIF39116.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
SK643]
Length = 283
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGILIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F D Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNFFKDHY 218
>gi|322376563|ref|ZP_08051056.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
M334]
gi|321282370|gb|EFX59377.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
M334]
Length = 283
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KITRQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKEHY 218
>gi|426366662|ref|XP_004050367.1| PREDICTED: mitochondrial GTPase 1 isoform 1 [Gorilla gorilla
gorilla]
Length = 334
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 123/233 (52%), Gaps = 27/233 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA + + + LVD I+EV DARIP S F + P +LVLNK
Sbjct: 30 WFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKP-----HLLVLNK 84
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFL-----QAHVRNLRKSDYD 137
MDLA T+ ++ + + + + + KD NVK+ + + ++H R R+ + +
Sbjct: 85 MDLADLTEQQKIMQHLEGEGLKNVIFTNCVKDENVKQIIPMVTELTGRSH-RYHRRENLE 143
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKI 196
+M++G+PNVGKS+L NSL R KGK V +PG T+ + S +++
Sbjct: 144 -----YCIMVIGVPNVGKSSLINSL----RRQHLRKGK--ATRVGGEPGITRAVMSKIQV 192
Query: 197 ASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ P +++LDTPG+L P I VE KLAL G + D VG + +A Y L LN
Sbjct: 193 SERPLMFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 245
>gi|149013110|ref|ZP_01833956.1| GTP-binding protein [Streptococcus pneumoniae SP19-BS75]
gi|418146365|ref|ZP_12783145.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA13637]
gi|419534624|ref|ZP_14074125.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA17457]
gi|421217718|ref|ZP_15674618.1| hypothetical protein AMCSP13_001363 [Streptococcus pneumoniae
2070335]
gi|147763055|gb|EDK69998.1| GTP-binding protein [Streptococcus pneumoniae SP19-BS75]
gi|353813573|gb|EHD93801.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA13637]
gi|379563972|gb|EHZ28969.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA17457]
gi|395584152|gb|EJG44564.1| hypothetical protein AMCSP13_001363 [Streptococcus pneumoniae
2070335]
Length = 283
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 116/230 (50%), Gaps = 19/230 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A P KEW +F+ Q + +NS + VK + + + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQEIQTLAINSKEQVTVKVVTDAAKKLMTDKIARQKERGIQIETLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++ +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
LDTPGIL P+ D V KLALTGAI D + E+ + GI F + Y
Sbjct: 171 LDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GINYFKEHY 218
>gi|30263841|ref|NP_846218.1| ribosomal biogenesis GTPase [Bacillus anthracis str. Ames]
gi|47529266|ref|YP_020615.1| ribosomal biogenesis GTPase [Bacillus anthracis str. 'Ames
Ancestor']
gi|49186688|ref|YP_029940.1| ribosomal biogenesis GTPase [Bacillus anthracis str. Sterne]
gi|65321165|ref|ZP_00394124.1| COG1161: Predicted GTPases [Bacillus anthracis str. A2012]
gi|170689661|ref|ZP_02880841.1| GTPase family protein [Bacillus anthracis str. A0465]
gi|170709354|ref|ZP_02899768.1| GTPase family protein [Bacillus anthracis str. A0389]
gi|227813254|ref|YP_002813263.1| ribosomal biogenesis GTPase [Bacillus anthracis str. CDC 684]
gi|229600440|ref|YP_002868075.1| ribosomal biogenesis GTPase [Bacillus anthracis str. A0248]
gi|254683455|ref|ZP_05147315.1| ribosomal biogenesis GTPase [Bacillus anthracis str. CNEVA-9066]
gi|254751310|ref|ZP_05203347.1| ribosomal biogenesis GTPase [Bacillus anthracis str. Vollum]
gi|254759310|ref|ZP_05211335.1| ribosomal biogenesis GTPase [Bacillus anthracis str. Australia 94]
gi|386737660|ref|YP_006210841.1| Ras superfamily GTP-binding protein YlqF [Bacillus anthracis str.
H9401]
gi|421507377|ref|ZP_15954297.1| GTPase YlqF [Bacillus anthracis str. UR-1]
gi|421639593|ref|ZP_16080184.1| GTPase YlqF [Bacillus anthracis str. BF1]
gi|30258485|gb|AAP27704.1| GTPase family protein [Bacillus anthracis str. Ames]
gi|47504414|gb|AAT33090.1| GTPase family protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49180615|gb|AAT55991.1| GTPase family protein [Bacillus anthracis str. Sterne]
gi|170125728|gb|EDS94641.1| GTPase family protein [Bacillus anthracis str. A0389]
gi|170666385|gb|EDT17168.1| GTPase family protein [Bacillus anthracis str. A0465]
gi|227002777|gb|ACP12520.1| GTPase family protein [Bacillus anthracis str. CDC 684]
gi|229264848|gb|ACQ46485.1| GTPase family protein [Bacillus anthracis str. A0248]
gi|384387512|gb|AFH85173.1| Ras superfamily GTP-binding protein YlqF [Bacillus anthracis str.
H9401]
gi|401822511|gb|EJT21661.1| GTPase YlqF [Bacillus anthracis str. UR-1]
gi|403393258|gb|EJY90503.1| GTPase YlqF [Bacillus anthracis str. BF1]
Length = 296
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 124/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +F ++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFKEKGHMAISINAQAGQGMKE----IAAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRVIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLK 222
Query: 258 AKFSINQI 265
++++N I
Sbjct: 223 ERYNLNDI 230
>gi|169834320|ref|YP_001694595.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae Hungary19A-6]
gi|168996822|gb|ACA37434.1| GTP-binding protein [Streptococcus pneumoniae Hungary19A-6]
Length = 283
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 117/231 (50%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + GI F Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GINYFKKHY 218
>gi|410901296|ref|XP_003964132.1| PREDICTED: mitochondrial GTPase 1-like [Takifugu rubripes]
Length = 319
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 123/244 (50%), Gaps = 17/244 (6%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA + + + VD I+E+ DARIP S F + + P +LVLNK
Sbjct: 27 WFPGHMAKGIKQMKASLKSVDCIIEIHDARIPLSGRNPVFQETLDVRP-----HLLVLNK 81
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTV 143
MDLA + K+ + ++ + K +K + V + S + +
Sbjct: 82 MDLADVSDKKDLLEKLAKKGVKNVLFTDCLKQRDDSVIKVVPTVVELIESSPRFSRCENT 141
Query: 144 --TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHP 200
+M++G+PNVGKS+ NSL R T +KG R + V +PG TK + + +++ P
Sbjct: 142 NYCLMVIGVPNVGKSSFINSL----RRTFLKKG--RASRVGGEPGITKAVLTKIQVCGRP 195
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKF 260
+++LDTPG+LPP+I VE KLAL G I D VG +A Y L LN +++ K+
Sbjct: 196 IMHLLDTPGVLPPKIESVETGMKLALCGTILDHLVGEDIIADYLLYSLNRLEKFSYVEKY 255
Query: 261 SINQ 264
+ Q
Sbjct: 256 DLEQ 259
>gi|410976331|ref|XP_003994576.1| PREDICTED: mitochondrial GTPase 1 [Felis catus]
Length = 332
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 117/228 (51%), Gaps = 17/228 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA + + + LVD I+EV DARIP S F + P +LVLNK
Sbjct: 30 WFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKP-----HVLVLNK 84
Query: 84 MDLASPTQFKEWITFFDQQNCPSFG-VNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
MDLA + ++ I + + + N +NVK+ + + V + + + S
Sbjct: 85 MDLADLKEQQKIIQHLEGEGLKNVVFTNCLQDENVKQIIPTVTGLVGSSCRY-HRGESLE 143
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPN 201
M++GIPNVGKS+L N+L R KGK V +PG T+ + S +++ P
Sbjct: 144 YCAMVIGIPNVGKSSLINAL----RRQHLRKGK--ATRVGGEPGITRAVMSRIQVCERPL 197
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+++LDTPG+L P I VE+ KLAL G + D VG + LA Y L LN
Sbjct: 198 MFLLDTPGVLAPRIESVEMGLKLALCGTVLDHLVGEETLADYLLYTLN 245
>gi|419776422|ref|ZP_14302344.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius SK54]
gi|383845833|gb|EID83233.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius SK54]
Length = 283
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 118/230 (51%), Gaps = 19/230 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+PFSS+ L ++LVLNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKFVDFVTILVDARLPFSSQNPML--TKIVGDKPKLLVLNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A KEW +F+ Q + +NS + VK+ + ++ ++ R+ + +T+
Sbjct: 64 ADAHLTKEWRRYFENQGIKTLAINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIETLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPN GKS L N L GK + A +PG TK LK S+ ++ +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA----------GK-KIAVTGNKPGVTKGQQWLK--SNKDLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
LDTPGIL P+ D +V KL+LTGAI D + E+ GI F + Y
Sbjct: 171 LDTPGILWPKFEDEKVALKLSLTGAIKDDVLPMDEVT--IFGINYFKEHY 218
>gi|392428770|ref|YP_006469781.1| GTP-binding protein [Streptococcus intermedius JTH08]
gi|391757916|dbj|BAM23533.1| GTP-binding protein [Streptococcus intermedius JTH08]
Length = 295
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 118/230 (51%), Gaps = 19/230 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+PFSS+ L ++LVLNK DL
Sbjct: 18 WFPGHMSKARRQVQENIKFVDFVTILVDARLPFSSQNPML--TKIVGDKPKLLVLNKADL 75
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A KEW +F+ Q + +NS + VK+ + ++ ++ R+ + +T+
Sbjct: 76 ADAHLTKEWRRYFENQGIKTLAINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIETLR 135
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPN GKS L N L GK + A +PG TK LK S+ ++ +
Sbjct: 136 TMIIGIPNAGKSTLMNRLA----------GK-KIAVTGNKPGVTKGQQWLK--SNKDLEI 182
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
LDTPGIL P+ D +V KL+LTGAI D + E+ GI F + Y
Sbjct: 183 LDTPGILWPKFEDEKVALKLSLTGAIKDDVLPMDEVT--IFGINYFKEHY 230
>gi|418976576|ref|ZP_13524444.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK575]
gi|383351328|gb|EID29134.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK575]
Length = 283
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIKIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKEHY 218
>gi|217961258|ref|YP_002339826.1| ribosomal biogenesis GTPase [Bacillus cereus AH187]
gi|229140481|ref|ZP_04269036.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-ST26]
gi|229157414|ref|ZP_04285492.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus ATCC
4342]
gi|229197948|ref|ZP_04324663.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus m1293]
gi|375285761|ref|YP_005106200.1| GTPase family protein [Bacillus cereus NC7401]
gi|384181651|ref|YP_005567413.1| GTPase YlqF [Bacillus thuringiensis serovar finitimus YBT-020]
gi|423353540|ref|ZP_17331167.1| ribosome biogenesis GTPase A [Bacillus cereus IS075]
gi|423374365|ref|ZP_17351703.1| ribosome biogenesis GTPase A [Bacillus cereus AND1407]
gi|423567267|ref|ZP_17543514.1| ribosome biogenesis GTPase A [Bacillus cereus MSX-A12]
gi|423574556|ref|ZP_17550675.1| ribosome biogenesis GTPase A [Bacillus cereus MSX-D12]
gi|423604535|ref|ZP_17580428.1| ribosome biogenesis GTPase A [Bacillus cereus VD102]
gi|217065992|gb|ACJ80242.1| GTPase family protein [Bacillus cereus AH187]
gi|228585527|gb|EEK43630.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus m1293]
gi|228626141|gb|EEK82890.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus ATCC
4342]
gi|228643042|gb|EEK99318.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-ST26]
gi|324327735|gb|ADY22995.1| GTPase YlqF [Bacillus thuringiensis serovar finitimus YBT-020]
gi|358354288|dbj|BAL19460.1| GTPase family protein [Bacillus cereus NC7401]
gi|401089353|gb|EJP97524.1| ribosome biogenesis GTPase A [Bacillus cereus IS075]
gi|401094277|gb|EJQ02359.1| ribosome biogenesis GTPase A [Bacillus cereus AND1407]
gi|401212081|gb|EJR18827.1| ribosome biogenesis GTPase A [Bacillus cereus MSX-D12]
gi|401214355|gb|EJR21085.1| ribosome biogenesis GTPase A [Bacillus cereus MSX-A12]
gi|401245155|gb|EJR51513.1| ribosome biogenesis GTPase A [Bacillus cereus VD102]
Length = 296
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 124/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +F ++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFKEKGHMAISINAQAGQGMKE----IAAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLK 222
Query: 258 AKFSINQI 265
++++N I
Sbjct: 223 ERYNLNDI 230
>gi|307708681|ref|ZP_07645144.1| GTP-binding protein [Streptococcus mitis NCTC 12261]
gi|307615255|gb|EFN94465.1| GTP-binding protein [Streptococcus mitis NCTC 12261]
Length = 283
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKEHY 218
>gi|52141650|ref|YP_085179.1| ribosomal biogenesis GTPase [Bacillus cereus E33L]
gi|218904967|ref|YP_002452801.1| ribosomal biogenesis GTPase [Bacillus cereus AH820]
gi|225865819|ref|YP_002751197.1| GTPase family protein [Bacillus cereus 03BB102]
gi|228916475|ref|ZP_04080041.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228928886|ref|ZP_04091918.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935152|ref|ZP_04097979.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228947557|ref|ZP_04109847.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229092880|ref|ZP_04224014.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-42]
gi|229123352|ref|ZP_04252556.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus 95/8201]
gi|229186078|ref|ZP_04313247.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus BGSC 6E1]
gi|254721976|ref|ZP_05183765.1| ribosomal biogenesis GTPase [Bacillus anthracis str. A1055]
gi|301055328|ref|YP_003793539.1| GTP-binding protein HSR1-like protein [Bacillus cereus biovar
anthracis str. CI]
gi|376267734|ref|YP_005120446.1| 50S ribosomal subunit maturation GTPase RbgA [Bacillus cereus
F837/76]
gi|423550413|ref|ZP_17526740.1| ribosome biogenesis GTPase A [Bacillus cereus ISP3191]
gi|51975119|gb|AAU16669.1| conserved hypothetical protein; GTPase family [Bacillus cereus
E33L]
gi|218539759|gb|ACK92157.1| GTPase family protein [Bacillus cereus AH820]
gi|225788163|gb|ACO28380.1| GTPase family protein [Bacillus cereus 03BB102]
gi|228597254|gb|EEK54905.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus BGSC 6E1]
gi|228660128|gb|EEL15764.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus 95/8201]
gi|228690502|gb|EEL44285.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-42]
gi|228812077|gb|EEM58408.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228824517|gb|EEM70322.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830693|gb|EEM76298.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228843054|gb|EEM88136.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|300377497|gb|ADK06401.1| GTP-binding protein HSR1-related protein [Bacillus cereus biovar
anthracis str. CI]
gi|364513534|gb|AEW56933.1| 50S ribosomal subunit maturation GTPase RbgA [Bacillus cereus
F837/76]
gi|401190029|gb|EJQ97079.1| ribosome biogenesis GTPase A [Bacillus cereus ISP3191]
Length = 296
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 124/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +F ++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFKEKGHMAISINAQAGQGMKE----IAAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLK 222
Query: 258 AKFSINQI 265
++++N I
Sbjct: 223 ERYNLNDI 230
>gi|228986981|ref|ZP_04147107.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228772759|gb|EEM21199.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 296
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 124/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +F ++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFKEKGHMAISINAQAGQGMKE----IAAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLK 222
Query: 258 AKFSINQI 265
++++N I
Sbjct: 223 ERYNLNDI 230
>gi|222097283|ref|YP_002531340.1| ribosomal biogenesis gtpase [Bacillus cereus Q1]
gi|221241341|gb|ACM14051.1| GTPase family protein [Bacillus cereus Q1]
Length = 296
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 124/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +F ++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFKEKGHMAISINAQAGQGMKE----IAAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L + +
Sbjct: 165 KE--MELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLK 222
Query: 258 AKFSINQI 265
++++N I
Sbjct: 223 ERYNLNDI 230
>gi|387786219|ref|YP_006251315.1| ribosomal biogenesis GTPase [Streptococcus mutans LJ23]
gi|449976138|ref|ZP_21816116.1| ribosomal biogenesis GTPase [Streptococcus mutans 11VS1]
gi|450098219|ref|ZP_21857901.1| ribosomal biogenesis GTPase [Streptococcus mutans SF1]
gi|450171566|ref|ZP_21884063.1| ribosomal biogenesis GTPase [Streptococcus mutans SM4]
gi|379132620|dbj|BAL69372.1| ribosomal biogenesis GTPase [Streptococcus mutans LJ23]
gi|449175866|gb|EMB78242.1| ribosomal biogenesis GTPase [Streptococcus mutans 11VS1]
gi|449221787|gb|EMC21544.1| ribosomal biogenesis GTPase [Streptococcus mutans SF1]
gi|449243888|gb|EMC42289.1| ribosomal biogenesis GTPase [Streptococcus mutans SM4]
Length = 283
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 117/221 (52%), Gaps = 17/221 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIIGDKPKLIILNKVDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A T EW FF++Q + VNS + VK+ + + + + ++ + +T+
Sbjct: 64 ADSTCTAEWCNFFEKQGIKALAVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPNVGKS L N L GK + A V +PG TK LK S+ N+ +
Sbjct: 124 TMIVGIPNVGKSTLMNRLA----------GK-KIAIVGNKPGVTKGQQWLK--SNKNLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
LDTPGIL P+ + V KLA+TGAI D+ + E+ + L
Sbjct: 171 LDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIFGL 211
>gi|197303273|ref|ZP_03168314.1| hypothetical protein RUMLAC_01996 [Ruminococcus lactaris ATCC
29176]
gi|197297699|gb|EDY32258.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus lactaris
ATCC 29176]
Length = 282
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 125/257 (48%), Gaps = 23/257 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A R + + + L+D+I+E+ DAR+P SS + D+L + R+++LNK
Sbjct: 5 WYPGHMTKARRMMQENIKLIDLIIELVDARVPLSSRNPDIDELGKNKA-----RLILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DLA + EW+ +F ++ + VNS +K +Q + + D +
Sbjct: 60 ADLAEDRRNDEWLEYFKEKGYSAVKVNSRKGGGIKSIQNVIQEACKEKMERDRKRGILNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M++GIPNVGKS NSL G+ A K PG TK +++ + N
Sbjct: 120 PVRAMVVGIPNVGKSTFINSLA--GKACAKTGNK---------PGVTKGKQWIRL--NKN 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
+ +LDTPGIL P+ D V KLA G+I D + +ELA + +N S K++
Sbjct: 167 VELLDTPGILWPKFEDQAVGLKLAFIGSIKDEILQTEELASELVDFINRSYPGVLEEKYA 226
Query: 262 INQINKPLTLHHKADQS 278
I + + K QS
Sbjct: 227 IEHSDDKFEVLEKIAQS 243
>gi|289167906|ref|YP_003446175.1| GTP-binding protein [Streptococcus mitis B6]
gi|288907473|emb|CBJ22310.1| GTP-binding protein [Streptococcus mitis B6]
Length = 283
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIKIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKEHY 218
>gi|70726671|ref|YP_253585.1| ribosomal biogenesis GTPase [Staphylococcus haemolyticus JCSC1435]
gi|68447395|dbj|BAE04979.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 294
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 129/261 (49%), Gaps = 36/261 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R + +++ VD++ E+ DARIP+SS D++ P R+++LNK
Sbjct: 5 WYPGHMAKAKREVTEQLKKVDVVFELVDARIPYSSRNPMIDEVIKQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK--EFLKFLQAHVRNLRKSDYDASSD 141
D+++ + ++W +FF + V++ + N+K E + R+
Sbjct: 60 KDMSNLNEMQKWESFFIDKGYYPVSVDAKHGKNLKGVETAAIAATKEKFEREKAKGLKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS L N L R A+ G +PG TK +K+ +
Sbjct: 120 AIRAMIVGIPNVGKSTLINKL---ARKNIAQTGN--------KPGVTKQQQWIKVGQ--S 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
+ +LDTPGIL P+ D V KL+LTGAI DS V E+A Y L +F
Sbjct: 167 LQLLDTPGILWPKFEDEIVGKKLSLTGAIKDSIVHLDEVAIYGL-------------QFL 213
Query: 262 INQINKPLTLHHKADQSSGSE 282
IN + H+K D S+ +E
Sbjct: 214 INHDLEGFKQHYKIDVSADAE 234
>gi|358464945|ref|ZP_09174903.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
oral taxon 058 str. F0407]
gi|357066474|gb|EHI76624.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
oral taxon 058 str. F0407]
Length = 283
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 119/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L + ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--NKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIKIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D + KLALTGAI D + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDDTIALKLALTGAIKDQLLPMDEVTIF--GLNYFKEHY 218
>gi|167630258|ref|YP_001680757.1| GTP-binding protein [Heliobacterium modesticaldum Ice1]
gi|167592998|gb|ABZ84746.1| GTP-binding protein, putative [Heliobacterium modesticaldum Ice1]
Length = 283
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 120/229 (52%), Gaps = 25/229 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + + + VD+ LE+ DARIP SS + D++ P RI++LNK
Sbjct: 6 WFPGHMARAQRQVGEDLAKVDLALELVDARIPLSSRNPDIDRILGEKP-----RIILLNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
DLA P + +I +F Q+ P+ +++ + + V+ ++ ++ L R
Sbjct: 61 ADLAEPAATRCFIDYFRLQSIPALSIDAVSGEGVRAIAPLVEQTLKPLIQRWRQRGMRPR 120
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSP-QPGETKDIYSLKIASHP 200
M++GIPNVGKS+L N L RH TV+ +PG T+ ++I
Sbjct: 121 AFRAMVVGIPNVGKSSLINRLAG------------RHRTVTADRPGVTRGPQWVRIGQ-- 166
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ +LDTPGIL P+ D V KL+ TGA+ D V +E+AQ+ L L+
Sbjct: 167 KLELLDTPGILWPKFEDPLVGFKLSATGAVSDLVVQVQEVAQFILQFLS 215
>gi|379722919|ref|YP_005315050.1| protein RbgA [Paenibacillus mucilaginosus 3016]
gi|386725697|ref|YP_006192023.1| protein RbgA [Paenibacillus mucilaginosus K02]
gi|378571591|gb|AFC31901.1| RbgA [Paenibacillus mucilaginosus 3016]
gi|384092822|gb|AFH64258.1| protein RbgA [Paenibacillus mucilaginosus K02]
Length = 294
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 132/249 (53%), Gaps = 33/249 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A R I D++ L+D+ +E+ DARIP SS D++ + P R+++LNK
Sbjct: 5 WFPGHMTRARRQIQDKLKLIDLAIELLDARIPLSSRNPMIDEILLNKP-----RLVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLK----FLQAHV-RNLRKSDYDA 138
DLA P + KEW+ +F +Q + ++S + VKE + L+ + +RK
Sbjct: 60 SDLADPERTKEWVAYFAEQGLNAVPIDSVGGNPVKEIMNRSKDLLEEKIAAQVRKG---I 116
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
+ + +++GIPNVGKS L N + GR AA K PG TK +K+ +
Sbjct: 117 NPRAIRALIVGIPNVGKSTLINRMA--GRKIAATGDK---------PGVTKGQQWIKVGT 165
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKK 256
+ +LDTPGIL P+ D V +LA TGAI + + +E+A + + L + D K+
Sbjct: 166 E--MELLDTPGILWPKFEDQTVGFRLAATGAIKEEILHPEEIALFAMRYLTQHYGDALKE 223
Query: 257 WAKFSINQI 265
+F ++++
Sbjct: 224 --RFGLDKL 230
>gi|291404947|ref|XP_002718812.1| PREDICTED: GTP_binding protein [Oryctolagus cuniculus]
Length = 335
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 127/254 (50%), Gaps = 18/254 (7%)
Query: 2 ATSSSSLFKLAREIGTAVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS 61
A + S + A G A+ + W+ HMA + + + VD ++EVRDARIP S
Sbjct: 5 ARALSGVTGAAWRAGVALRGQDVARWFPGHMAKGLKKMQSSLTRVDCVIEVRDARIPLSG 64
Query: 62 E---FDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGV--NSHNKDN 116
F + P +LVLNKMDLA T+ ++ + ++ + N +N
Sbjct: 65 RNPVFQEALGLKPH-----LLVLNKMDLADLTERQKIVQQLEEGEGLRNVIFTNCMTDEN 119
Query: 117 VKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKL 176
V++ + + + + + + D VM+ GIPNVGKS+L NSL R KGK
Sbjct: 120 VRQVIPAVSQLIGSSHRYHRGENVD-YCVMVAGIPNVGKSSLINSL----RRQHLRKGK- 173
Query: 177 RHATVSPQPGETKDIYS-LKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFV 235
V +PG T+ + S ++++ P +++LDTPG+L P I VE KLAL G + D V
Sbjct: 174 -ATRVGGEPGITRAVTSRIQVSERPLVFLLDTPGVLAPRIESVETGLKLALCGTLLDHLV 232
Query: 236 GGKELAQYFLGILN 249
G + +A Y L LN
Sbjct: 233 GEETMADYLLHTLN 246
>gi|270292736|ref|ZP_06198947.1| GTP-binding protein [Streptococcus sp. M143]
gi|270278715|gb|EFA24561.1| GTP-binding protein [Streptococcus sp. M143]
Length = 283
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 119/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L + ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--NKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A + +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVIGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDDAVALKLALTGAIKDQLLPMDEVTIF--GLNYFKEHY 218
>gi|304316920|ref|YP_003852065.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778422|gb|ADL68981.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 278
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 112/227 (49%), Gaps = 25/227 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA R I + + +VDI+ E+ DARIP SS D+L + +R+++LNK
Sbjct: 4 WYPGHMAKTKRLIEENLKIVDIVYELIDARIPKSSRNPLIDEL-----VKNKKRLILLNK 58
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
DL+ K W +F + S +NS N ++KE + N+ RK +
Sbjct: 59 ADLSDSAVNKMWNEYFKKLGIASLNINSLNSSSIKEIYELTLKECSNIIDRKRQKGIKA- 117
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS L NSL K + A +PG TK + + P
Sbjct: 118 KLRAMIVGIPNVGKSTLINSL-----------SKTKSAKTGNKPGVTK---AKQWIRTPY 163
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+LDTPGIL P+ D V LALT AI D + +ELA L IL
Sbjct: 164 FDLLDTPGILWPKFEDEHVGIMLALTAAIKDELLNHEELAFSLLKIL 210
>gi|337750071|ref|YP_004644233.1| protein RbgA [Paenibacillus mucilaginosus KNP414]
gi|336301260|gb|AEI44363.1| RbgA [Paenibacillus mucilaginosus KNP414]
Length = 294
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 132/249 (53%), Gaps = 33/249 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A R I D++ L+D+ +E+ DARIP SS D++ + P R+++LNK
Sbjct: 5 WFPGHMTRARRQIQDKLKLIDLAIELLDARIPLSSRNPMIDEILLNKP-----RLVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLK----FLQAHV-RNLRKSDYDA 138
DLA P + KEW+ +F +Q + ++S + VKE + L+ + +RK
Sbjct: 60 SDLADPERTKEWVAYFAEQGLNAVPIDSVGGNPVKEIMNRSKDLLEEKIAAQVRKG---I 116
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
+ + +++GIPNVGKS L N + GR AA K PG TK +K+ +
Sbjct: 117 NPRAIRALIVGIPNVGKSTLINRMA--GRKIAATGDK---------PGVTKGQQWIKVGT 165
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKK 256
+ +LDTPGIL P+ D V +LA TGAI + + +E+A + + L + D K+
Sbjct: 166 E--MELLDTPGILWPKFEDQTVGFRLAATGAIKEEILHPEEIALFAMRYLTQHYGDALKE 223
Query: 257 WAKFSINQI 265
+F ++++
Sbjct: 224 --RFGLDKL 230
>gi|449958420|ref|ZP_21809743.1| ribosomal biogenesis GTPase [Streptococcus mutans 4VF1]
gi|450140205|ref|ZP_21872835.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML1]
gi|449170022|gb|EMB72763.1| ribosomal biogenesis GTPase [Streptococcus mutans 4VF1]
gi|449232095|gb|EMC31231.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML1]
Length = 283
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 117/221 (52%), Gaps = 17/221 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIIGDKPKLIILNKVDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A T EW FF++Q + VNS + VK+ + + + + ++ + +T+
Sbjct: 64 ADSTCTAEWCNFFEKQGIKALAVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPNVGKS L N L GK + A V +PG TK LK S+ N+ +
Sbjct: 124 TMIVGIPNVGKSTLMNRLA----------GK-KIAIVGNKPGVTKGQQWLK--SNKNLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
LDTPGIL P+ + V KLA+TGAI D+ + E+ + L
Sbjct: 171 LDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIFGL 211
>gi|389573273|ref|ZP_10163348.1| ribosomal biogenesis GTPase [Bacillus sp. M 2-6]
gi|388426970|gb|EIL84780.1| ribosomal biogenesis GTPase [Bacillus sp. M 2-6]
Length = 282
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 115/232 (49%), Gaps = 31/232 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+DI+ E+ DARIP SS +++ + P +I++LNK
Sbjct: 5 WFPGHMAKARREVTEKLKLIDIVFELTDARIPMSSRNPMIEEILQNKP-----KIMLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
D A P KEW F+ Q S +NS + + + + + + K +D
Sbjct: 60 ADKADPRMTKEWQAHFEAQGVRSLAINSVDGQGLNQII----TTSKEILKEKFDRMKAKG 115
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 VKPRAIRALIIGIPNVGKSTLINRL-----------AKKNIAKTGDRPGITTSQQWVKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ +LDTPGIL P+ D +V +LA+TGAI DS + +++A Y L L
Sbjct: 165 KE--LELLDTPGILWPKFEDEQVGLRLAVTGAIKDSIINLQDVAVYALRFLE 214
>gi|358060975|ref|ZP_09147663.1| ribosomal biogenesis GTPase [Staphylococcus simiae CCM 7213]
gi|357256550|gb|EHJ06910.1| ribosomal biogenesis GTPase [Staphylococcus simiae CCM 7213]
Length = 294
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 120/234 (51%), Gaps = 37/234 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D + P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKS 134
D+++ + ++W FF ++ V++ + N+K+ KF + + L+
Sbjct: 60 KDMSNLKEMEKWKDFFVEKGYYPVAVDAKHGKNLKQVEAAAIKATKEKFEREKAKGLKPR 119
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ M++GIPNVGKS L N L T A+ G +PG TK +
Sbjct: 120 -------AIRAMIVGIPNVGKSTLINKL---ANRTIAQTGN--------KPGVTKQQQWI 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
K+ + +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L L
Sbjct: 162 KVGKL--LQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFL 213
>gi|449927031|ref|ZP_21801063.1| ribosomal biogenesis GTPase [Streptococcus mutans 4SM1]
gi|450050424|ref|ZP_21840267.1| ribosomal biogenesis GTPase [Streptococcus mutans NFSM1]
gi|449160029|gb|EMB63317.1| ribosomal biogenesis GTPase [Streptococcus mutans 4SM1]
gi|449202643|gb|EMC03545.1| ribosomal biogenesis GTPase [Streptococcus mutans NFSM1]
Length = 283
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 117/221 (52%), Gaps = 17/221 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIIGDKPKLIILNKVDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A T EW FF++Q + VNS + VK+ + + + + ++ + +T+
Sbjct: 64 ADSTCTAEWCNFFEKQGIKALAVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPNVGKS L N L GK + A V +PG TK LK S+ N+ +
Sbjct: 124 TMIVGIPNVGKSTLMNRLA----------GK-KIAIVGNKPGVTKGQQWLK--SNKNLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
LDTPGIL P+ + V KLA+TGAI D+ + E+ + L
Sbjct: 171 LDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIFGL 211
>gi|414158502|ref|ZP_11414796.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
F0441]
gi|410871047|gb|EKS19004.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
F0441]
Length = 283
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L + ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--NKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIKIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIALVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKKHY 218
>gi|417907113|ref|ZP_12550889.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
capitis VCU116]
gi|341596744|gb|EGS39335.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
capitis VCU116]
Length = 288
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 120/227 (52%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D++ P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVIKQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK--EFLKFLQAHVRNLRKSDYDASSD 141
D+ + + ++W FF +Q V++ + N+K E + R+ +
Sbjct: 60 KDMTNLKELEKWEGFFKEQGFFPVAVDAKHGKNLKNVEAEAIKATKEKFEREKEKGLKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS L N L + + AE G +PG TK +K+ +
Sbjct: 120 AIRAMIVGIPNVGKSTLINKL---AKRSIAETGN--------KPGVTKQQQWIKVGK--S 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L +
Sbjct: 167 LQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFM 213
>gi|339009353|ref|ZP_08641925.1| ribosome biogenesis GTPase A [Brevibacillus laterosporus LMG 15441]
gi|338773831|gb|EGP33362.1| ribosome biogenesis GTPase A [Brevibacillus laterosporus LMG 15441]
Length = 298
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 23/222 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ VD+++E+ DAR+P SS D++ P R+++LNK
Sbjct: 5 WFPGHMAKARRQVTEKLKQVDVVIELLDARLPLSSRNPMIDEIVAEKP-----RLILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
DLA P+ + WI +F +Q + +++ + V + + Q ++ +++D +
Sbjct: 60 ADLADPSVTEMWIRYFKEQGLRTLPIDALSGRGVNKLPELCQELASDMLQKRADRGMLAR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V +M+LGIPNVGKS+L N L K A +P TK +K+
Sbjct: 120 AVRIMILGIPNVGKSSLINRL-----------AKRSVAQTGDRPAVTKSQQWVKMGD--T 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
+ +LDTPGIL P+ D V +LA +GAI D + E+A Y
Sbjct: 167 LELLDTPGILWPKFEDQMVGLRLAASGAIKDELIDFSEVALY 208
>gi|351698046|gb|EHB00965.1| Mitochondrial GTPase 1 [Heterocephalus glaber]
Length = 333
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 126/245 (51%), Gaps = 23/245 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA + + + LVD I+EV D+RI F F + P +LVLNK
Sbjct: 29 WFPGHMAKGLKKMQSSLKLVDCIIEVHDSRISFHGRNPLFQETLGLKP-----HLLVLNK 83
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYD---AS 139
MDLA T+ ++ I + + + + KD N+K+ + + L S Y A
Sbjct: 84 MDLADLTEQQKIIHHLEGEGLKNIIFTNCIKDENIKQII----PKITELVGSSYRYHRAE 139
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIAS 198
+ +M++GIPNVGKS+L NSL R + GK A V +PG T+ + S ++++
Sbjct: 140 NMEYCIMVVGIPNVGKSSLINSL----RRQHLKTGK--AARVGGEPGITRAVTSRIQVSE 193
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWA 258
P +++LDTPG+L P+I VE KLAL G + D VG + +A Y L LN +K
Sbjct: 194 RPLMFLLDTPGVLAPQIGSVETGLKLALCGTVLDHLVGEETMADYLLYTLNRHRMFKYVQ 253
Query: 259 KFSIN 263
+ +N
Sbjct: 254 HYGLN 258
>gi|449909707|ref|ZP_21794330.1| ribosomal biogenesis GTPase [Streptococcus mutans OMZ175]
gi|449971257|ref|ZP_21814298.1| ribosomal biogenesis GTPase [Streptococcus mutans 2VS1]
gi|450029521|ref|ZP_21832725.1| ribosomal biogenesis GTPase [Streptococcus mutans G123]
gi|450035162|ref|ZP_21834851.1| ribosomal biogenesis GTPase [Streptococcus mutans M21]
gi|450056943|ref|ZP_21842300.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML4]
gi|450067235|ref|ZP_21846489.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML9]
gi|450070397|ref|ZP_21847531.1| ribosomal biogenesis GTPase [Streptococcus mutans M2A]
gi|450093717|ref|ZP_21856703.1| ribosomal biogenesis GTPase [Streptococcus mutans W6]
gi|450110770|ref|ZP_21862320.1| ribosomal biogenesis GTPase [Streptococcus mutans SM6]
gi|450148705|ref|ZP_21875763.1| ribosomal biogenesis GTPase [Streptococcus mutans 14D]
gi|450182873|ref|ZP_21888494.1| ribosomal biogenesis GTPase [Streptococcus mutans 24]
gi|449172252|gb|EMB74883.1| ribosomal biogenesis GTPase [Streptococcus mutans 2VS1]
gi|449194447|gb|EMB95803.1| ribosomal biogenesis GTPase [Streptococcus mutans G123]
gi|449195801|gb|EMB97109.1| ribosomal biogenesis GTPase [Streptococcus mutans M21]
gi|449206006|gb|EMC06727.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML4]
gi|449208171|gb|EMC08788.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML9]
gi|449213883|gb|EMC14206.1| ribosomal biogenesis GTPase [Streptococcus mutans M2A]
gi|449216983|gb|EMC17061.1| ribosomal biogenesis GTPase [Streptococcus mutans W6]
gi|449224544|gb|EMC24176.1| ribosomal biogenesis GTPase [Streptococcus mutans SM6]
gi|449235498|gb|EMC34455.1| ribosomal biogenesis GTPase [Streptococcus mutans 14D]
gi|449244107|gb|EMC42495.1| ribosomal biogenesis GTPase [Streptococcus mutans 24]
gi|449261123|gb|EMC58608.1| ribosomal biogenesis GTPase [Streptococcus mutans OMZ175]
Length = 283
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 117/221 (52%), Gaps = 17/221 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIIGDKPKLIILNKVDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A T EW FF++Q + VNS + VK+ + + + + ++ + +T+
Sbjct: 64 ADSTCTAEWCNFFEKQGIKALAVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPNVGKS L N L GK + A V +PG TK LK S+ N+ +
Sbjct: 124 TMIVGIPNVGKSTLMNRLA----------GK-KIAIVGNKPGVTKGQQWLK--SNKNLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
LDTPGIL P+ + V KLA+TGAI D+ + E+ + L
Sbjct: 171 LDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIFGL 211
>gi|424761234|ref|ZP_18188816.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
R508]
gi|402402218|gb|EJV34939.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
R508]
Length = 314
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 115/224 (51%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R +++++ VDI+ E+ DAR+P SS DQ+ P R+++LNK
Sbjct: 36 WFPGHMAKARREVSEKIKYVDIVFELVDARLPLSSRNPMMDQIVQQKP-----RLVLLNK 90
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSD 141
DLA Q K+W +F ++ + +N+ + + + + ++ R+
Sbjct: 91 GDLADNDQNKKWQHYFQKKGYQTLVINAQQNKGINKIVPAAKEALKEKLAREQAKGLKPR 150
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M +GIPNVGKS L N L +G+ + A +PG TK L+ S
Sbjct: 151 AIRAMCIGIPNVGKSTLMNRL--VGK---------KIAQTGNKPGVTKGQQWLRSGSQ-- 197
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D E+ KLALTGAI D + +LA Y L
Sbjct: 198 LELLDTPGILWPKFEDEEIGKKLALTGAIKDQLLHLDDLAIYGL 241
>gi|260583826|ref|ZP_05851574.1| ribosome biogenesis GTP-binding protein YlqF [Granulicatella
elegans ATCC 700633]
gi|260158452|gb|EEW93520.1| ribosome biogenesis GTP-binding protein YlqF [Granulicatella
elegans ATCC 700633]
Length = 285
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 128/241 (53%), Gaps = 33/241 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRN---HHPFSSSRRILVLNK 83
WY HMA A R +++ LVD+++E+ DARIP SS RN + +++++LNK
Sbjct: 6 WYPGHMAKAKREAIEKLKLVDVVIELVDARIPESS-----RNPIVNEIKGQKKQLMLLNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT- 142
DLA P Q K+W+ ++ ++ V + + + + ++A ++ L +++ +
Sbjct: 61 TDLADPIQTKKWMKYYQEEGIEVLTVEAKDGKGLNQ----VKAAIKALMAEEFEKLAAKG 116
Query: 143 -----VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +M+LGIPNVGKS N + Q A + +PG TK LKI
Sbjct: 117 VRPRPIRLMVLGIPNVGKSTFINRMIQKN-----------QAETANRPGVTKGQRWLKIG 165
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYK 255
+ + +LDTPGIL P+ + E+ +KLA+TGAI DS + ++A + + I ++D +
Sbjct: 166 N--DFELLDTPGILWPKFDNQEIGNKLAVTGAIKDSLLHMDDVALFAINIFRTYYTDALR 223
Query: 256 K 256
K
Sbjct: 224 K 224
>gi|449921541|ref|ZP_21798976.1| ribosomal biogenesis GTPase [Streptococcus mutans 1SM1]
gi|449156980|gb|EMB60434.1| ribosomal biogenesis GTPase [Streptococcus mutans 1SM1]
Length = 283
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 117/221 (52%), Gaps = 17/221 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIIGDKPKLIILNKVDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A T EW FF++Q + VNS + VK+ + + + + ++ + +T+
Sbjct: 64 ADSTCTAEWCNFFEKQGIKALAVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPNVGKS L N L GK + A V +PG TK LK S+ N+ +
Sbjct: 124 TMIVGIPNVGKSTLMNRLA----------GK-KIAIVGNKPGVTKGQQWLK--SNKNLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
LDTPGIL P+ + V KLA+TGAI D+ + E+ + L
Sbjct: 171 LDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIFGL 211
>gi|444414111|ref|ZP_21210415.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0199]
gi|444283189|gb|ELU88395.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0199]
Length = 283
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIKIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKEHY 218
>gi|419766049|ref|ZP_14292267.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK579]
gi|383354502|gb|EID32064.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK579]
Length = 283
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQRERGIKIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKEHY 218
>gi|293374718|ref|ZP_06621026.1| ribosome biogenesis GTP-binding protein YlqF [Turicibacter
sanguinis PC909]
gi|325840619|ref|ZP_08167100.1| ribosome biogenesis GTP-binding protein YlqF [Turicibacter sp.
HGF1]
gi|292646632|gb|EFF64634.1| ribosome biogenesis GTP-binding protein YlqF [Turicibacter
sanguinis PC909]
gi|325490268|gb|EGC92601.1| ribosome biogenesis GTP-binding protein YlqF [Turicibacter sp.
HGF1]
Length = 290
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 121/227 (53%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R I +++ LVDI+ E+ DARIP+SS +++ H P ++++LNK
Sbjct: 5 WFPGHMAKARRQIQEKLQLVDIVFELLDARIPYSSSNPMMNEIIKHKP-----KLIILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
+D+A P ++W+ +F +Q P+ +++ +++ +K+ + + ++ +
Sbjct: 60 VDMADPNVTQQWLNYFKEQGQPAITIDALHQNAIKQITEASKEILKEKFAKEKAKGLRPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M+LGIPNVGKS L N+L K + A +PG TK +K+
Sbjct: 120 PVRAMILGIPNVGKSTLMNNL-----------AKRKAAQTGDRPGVTKAQQWVKVGQE-- 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPG+L P+ + V LA+TGAI D+ + + Y L L
Sbjct: 167 LELLDTPGVLWPKFEEKRVGYNLAVTGAIKDTILTLDHIILYALDYL 213
>gi|449875654|ref|ZP_21782326.1| ribosomal biogenesis GTPase [Streptococcus mutans S1B]
gi|449930305|ref|ZP_21802010.1| ribosomal biogenesis GTPase [Streptococcus mutans 3SN1]
gi|449980074|ref|ZP_21816995.1| ribosomal biogenesis GTPase [Streptococcus mutans 5SM3]
gi|449999609|ref|ZP_21824578.1| ribosomal biogenesis GTPase [Streptococcus mutans N29]
gi|450005823|ref|ZP_21826894.1| ribosomal biogenesis GTPase [Streptococcus mutans NMT4863]
gi|450063408|ref|ZP_21844874.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML5]
gi|450127425|ref|ZP_21868583.1| ribosomal biogenesis GTPase [Streptococcus mutans U2A]
gi|450158654|ref|ZP_21878970.1| ribosomal biogenesis GTPase [Streptococcus mutans 66-2A]
gi|449163670|gb|EMB66766.1| ribosomal biogenesis GTPase [Streptococcus mutans 3SN1]
gi|449177481|gb|EMB79782.1| ribosomal biogenesis GTPase [Streptococcus mutans 5SM3]
gi|449186740|gb|EMB88556.1| ribosomal biogenesis GTPase [Streptococcus mutans N29]
gi|449188279|gb|EMB90002.1| ribosomal biogenesis GTPase [Streptococcus mutans NMT4863]
gi|449204705|gb|EMC05491.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML5]
gi|449230813|gb|EMC30059.1| ribosomal biogenesis GTPase [Streptococcus mutans U2A]
gi|449242152|gb|EMC40755.1| ribosomal biogenesis GTPase [Streptococcus mutans 66-2A]
gi|449253617|gb|EMC51563.1| ribosomal biogenesis GTPase [Streptococcus mutans S1B]
Length = 283
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 117/221 (52%), Gaps = 17/221 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIIGDKPKLIILNKVDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A T EW FF++Q + VNS + VK+ + + + + ++ + +T+
Sbjct: 64 ADSTCTAEWCNFFEKQGIKALAVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPNVGKS L N L GK + A V +PG TK LK S+ N+ +
Sbjct: 124 TMIVGIPNVGKSTLMNRLA----------GK-KIAIVGNKPGVTKGQQWLK--SNKNLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
LDTPGIL P+ + V KLA+TGAI D+ + E+ + L
Sbjct: 171 LDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIFGL 211
>gi|294500953|ref|YP_003564653.1| ribosome biogenesis GTPase A [Bacillus megaterium QM B1551]
gi|294350890|gb|ADE71219.1| ribosome biogenesis GTPase A [Bacillus megaterium QM B1551]
Length = 288
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 134/248 (54%), Gaps = 30/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+DI+ E+ DARIP SS D++ + P RI++LNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDIVYELVDARIPQSSRNPMIDEIIVNKP-----RIVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDAS 139
+D A P ++W+ ++ +Q + +++ +K+ + + LQ +R
Sbjct: 60 VDKADPRVTQQWLDYYKEQGIYALAIDAQAGKGMKQIVSSSKELLQEKFDRMRAKGVKKP 119
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS L N L A++K A +PG T+ +K+ +
Sbjct: 120 R-AIRAMIVGIPNVGKSTLINRL-------ASKK----IAKTGDRPGVTQAQQWIKVGNE 167
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKW 257
+ +LDTPGIL P+ D +V KLA TGAI D+ + +++A Y L L+ + ++ K+
Sbjct: 168 --LELLDTPGILWPKFEDEKVGYKLATTGAIKDTILNMQDVAVYALRFLSSHYPEQLKQ- 224
Query: 258 AKFSINQI 265
++ +N+I
Sbjct: 225 -RYDLNEI 231
>gi|339448331|ref|ZP_08651887.1| GTPase [Lactobacillus fructivorans KCTC 3543]
Length = 291
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 122/251 (48%), Gaps = 33/251 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + + +VDII E+ DARIP+SS E ++ + P R+ +L K
Sbjct: 7 WFPGHMAKAIRQFEENVHVVDIIFELVDARIPYSSVNPEIKRVAGNKP-----RLFILTK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASS--- 140
DLA P ++W+ +F+Q + ++S K ++A R + K + S
Sbjct: 62 SDLADPKMTQKWLDYFNQTGLSAISIDS----KAHGVRKKIEAAARQVLKPRLEKSQAKG 117
Query: 141 ---DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
D + + +G+PNVGKS L N L R A V +PG TK L
Sbjct: 118 IKKDILKAVCVGVPNVGKSTLLNQLVS-----------KRSAAVGNRPGVTKGQQWL--T 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYK 255
S P + +LDTPGIL P+ + E+ KLALTGAI +S ++A + L N DE
Sbjct: 165 SSPTMELLDTPGILWPKFQNQEIADKLALTGAIKESIYHPDDIALFALHFFRTNHEDEIL 224
Query: 256 KWAKFSINQIN 266
K + N +N
Sbjct: 225 KRYHLNANDLN 235
>gi|160933522|ref|ZP_02080910.1| hypothetical protein CLOLEP_02368 [Clostridium leptum DSM 753]
gi|156867399|gb|EDO60771.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium leptum
DSM 753]
Length = 289
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 118/230 (51%), Gaps = 19/230 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM R I + LVD + E+ DARIP SS +L H + RI+++NK D+
Sbjct: 9 WFPGHMTKTRRKIQASLKLVDAVAEIIDARIPVSSRNPEL--HKIIENKPRIILMNKCDM 66
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A P+Q W++ + ++ + V+ + + +F+ ++ +++ ++ + T+
Sbjct: 67 ADPSQTARWVSCYQKEGVLAIPVDCKSGRGLNQFIPKVRELLKDRIIQWEQKGMVNRTIR 126
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
VM++GIPNVGKS+ N + + R A V +PG T+ I ++
Sbjct: 127 VMIVGIPNVGKSSFINRMAKQNR-----------AKVEDRPGVTRGNQWFTIGKAFDL-- 173
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
LDTPG+L P+ D V KLA TGA+ D V ++LA L +L DEY
Sbjct: 174 LDTPGVLWPKFDDPNVGEKLAFTGAVKDQIVDTEQLASRLLEVLR--DEY 221
>gi|227518839|ref|ZP_03948888.1| GTP-binding protein [Enterococcus faecalis TX0104]
gi|227553456|ref|ZP_03983505.1| GTP-binding protein [Enterococcus faecalis HH22]
gi|229545736|ref|ZP_04434461.1| GTP-binding protein [Enterococcus faecalis TX1322]
gi|229549925|ref|ZP_04438650.1| GTP-binding protein [Enterococcus faecalis ATCC 29200]
gi|293382907|ref|ZP_06628825.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
R712]
gi|293389604|ref|ZP_06634061.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
S613]
gi|307270932|ref|ZP_07552215.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX4248]
gi|307274872|ref|ZP_07556035.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX2134]
gi|307277979|ref|ZP_07559063.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0860]
gi|307291910|ref|ZP_07571779.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0411]
gi|312899501|ref|ZP_07758831.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0470]
gi|312907623|ref|ZP_07766614.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
DAPTO 512]
gi|312910240|ref|ZP_07769087.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
DAPTO 516]
gi|312951584|ref|ZP_07770480.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0102]
gi|384513330|ref|YP_005708423.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
OG1RF]
gi|422685902|ref|ZP_16744115.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX4000]
gi|422692935|ref|ZP_16750950.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0031]
gi|422695067|ref|ZP_16753055.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX4244]
gi|422699129|ref|ZP_16757002.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1346]
gi|422701845|ref|ZP_16759685.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1342]
gi|422704561|ref|ZP_16762371.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1302]
gi|422706577|ref|ZP_16764275.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0043]
gi|422708558|ref|ZP_16766086.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0027]
gi|422714534|ref|ZP_16771260.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0309A]
gi|422715792|ref|ZP_16772508.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0309B]
gi|422719008|ref|ZP_16775659.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0017]
gi|422722435|ref|ZP_16778985.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX2137]
gi|422727138|ref|ZP_16783581.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0312]
gi|422728820|ref|ZP_16785226.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0012]
gi|422733485|ref|ZP_16789787.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0645]
gi|422734226|ref|ZP_16790520.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1341]
gi|422739090|ref|ZP_16794273.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX2141]
gi|422869271|ref|ZP_16915791.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1467]
gi|424673132|ref|ZP_18110075.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
599]
gi|424676678|ref|ZP_18113549.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV103]
gi|424681506|ref|ZP_18118293.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV116]
gi|424683696|ref|ZP_18120446.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV129]
gi|424686400|ref|ZP_18123068.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV25]
gi|424690328|ref|ZP_18126863.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV31]
gi|424695421|ref|ZP_18131804.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV37]
gi|424696840|ref|ZP_18133181.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV41]
gi|424699774|ref|ZP_18135985.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV62]
gi|424703213|ref|ZP_18139347.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV63]
gi|424707290|ref|ZP_18143274.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV65]
gi|424717050|ref|ZP_18146348.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV68]
gi|424720628|ref|ZP_18149729.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV72]
gi|424724176|ref|ZP_18153125.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV73]
gi|424733767|ref|ZP_18162322.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV81]
gi|424743934|ref|ZP_18172239.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV85]
gi|424750558|ref|ZP_18178622.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV93]
gi|430360682|ref|ZP_19426403.1| GTP-binding protein [Enterococcus faecalis OG1X]
gi|227073710|gb|EEI11673.1| GTP-binding protein [Enterococcus faecalis TX0104]
gi|227177413|gb|EEI58385.1| GTP-binding protein [Enterococcus faecalis HH22]
gi|229304938|gb|EEN70934.1| GTP-binding protein [Enterococcus faecalis ATCC 29200]
gi|229309186|gb|EEN75173.1| GTP-binding protein [Enterococcus faecalis TX1322]
gi|291079572|gb|EFE16936.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
R712]
gi|291081221|gb|EFE18184.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
S613]
gi|306496908|gb|EFM66456.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0411]
gi|306505376|gb|EFM74562.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0860]
gi|306508320|gb|EFM77427.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX2134]
gi|306512430|gb|EFM81079.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX4248]
gi|310626651|gb|EFQ09934.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
DAPTO 512]
gi|310630550|gb|EFQ13833.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0102]
gi|311289513|gb|EFQ68069.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
DAPTO 516]
gi|311293371|gb|EFQ71927.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0470]
gi|315027180|gb|EFT39112.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX2137]
gi|315029297|gb|EFT41229.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX4000]
gi|315034057|gb|EFT45989.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0017]
gi|315037066|gb|EFT48998.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0027]
gi|315145133|gb|EFT89149.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX2141]
gi|315147350|gb|EFT91366.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX4244]
gi|315150450|gb|EFT94466.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0012]
gi|315152394|gb|EFT96410.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0031]
gi|315155666|gb|EFT99682.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0043]
gi|315158163|gb|EFU02180.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0312]
gi|315160533|gb|EFU04550.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0645]
gi|315164102|gb|EFU08119.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1302]
gi|315168948|gb|EFU12965.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1341]
gi|315169818|gb|EFU13835.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1342]
gi|315172217|gb|EFU16234.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1346]
gi|315575778|gb|EFU87969.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0309B]
gi|315580430|gb|EFU92621.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0309A]
gi|327535219|gb|AEA94053.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
OG1RF]
gi|329571608|gb|EGG53289.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1467]
gi|402351213|gb|EJU86105.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV116]
gi|402352942|gb|EJU87778.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
599]
gi|402356298|gb|EJU91032.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV103]
gi|402364455|gb|EJU98891.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV31]
gi|402364694|gb|EJU99129.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV129]
gi|402367254|gb|EJV01595.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV25]
gi|402368359|gb|EJV02675.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV37]
gi|402375703|gb|EJV09683.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV62]
gi|402377169|gb|EJV11080.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV41]
gi|402384888|gb|EJV18429.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV65]
gi|402385218|gb|EJV18758.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV63]
gi|402386398|gb|EJV19904.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV68]
gi|402391097|gb|EJV24413.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV81]
gi|402393099|gb|EJV26329.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV72]
gi|402395660|gb|EJV28747.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV73]
gi|402399610|gb|EJV32476.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV85]
gi|402406536|gb|EJV39086.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV93]
gi|429512797|gb|ELA02394.1| GTP-binding protein [Enterococcus faecalis OG1X]
Length = 292
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 115/224 (51%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R +++++ VDI+ E+ DAR+P SS DQ+ P R+++LNK
Sbjct: 14 WFPGHMAKARREVSEKIKYVDIVFELVDARLPLSSRNPMMDQIVQQKP-----RLVLLNK 68
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSD 141
DLA Q K+W +F ++ + +N+ + + + + ++ R+
Sbjct: 69 GDLADNDQNKKWQHYFQKKGYQTLVINAQQNKGINKIVPAAKEALKEKLAREQAKGLKPR 128
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M +GIPNVGKS L N L +G+ + A +PG TK L+ S
Sbjct: 129 AIRAMCIGIPNVGKSTLMNRL--VGK---------KIAQTGNKPGVTKGQQWLRSGSQ-- 175
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D E+ KLALTGAI D + +LA Y L
Sbjct: 176 LELLDTPGILWPKFEDEEIGKKLALTGAIKDQLLHLDDLAIYGL 219
>gi|418975316|ref|ZP_13523225.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK1074]
gi|383348687|gb|EID26646.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK1074]
Length = 330
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L + ++L+LNK DL
Sbjct: 53 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--NKIVGDKPKLLILNKADL 110
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 111 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIKIETL 169
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 170 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 216
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F Y
Sbjct: 217 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKKHY 265
>gi|329117496|ref|ZP_08246213.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parauberis NCFD 2020]
gi|326907901|gb|EGE54815.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parauberis NCFD 2020]
Length = 284
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 119/232 (51%), Gaps = 23/232 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLK----FLQAHVRNLRKSDYDASSDT 142
A + KEW F+++Q + +NS + VK+ + + ++ LR D +T
Sbjct: 64 ADKSMTKEWRQFYEKQGIKTLAINSKEQSTVKKVTEAAKDLMADKIQRLR--DRGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D +V KLALTGAI D + E+ G+ F + Y
Sbjct: 169 EILDTPGILWPKFEDQKVGLKLALTGAIKDQLLPMDEVT--IFGLNYFKEHY 218
>gi|417934676|ref|ZP_12577996.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
bv. 2 str. F0392]
gi|340771246|gb|EGR93761.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
bv. 2 str. F0392]
Length = 283
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L + ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--NKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIKIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F Y
Sbjct: 170 ILDTPGILWPKFEDDTVALKLALTGAIKDQLLPMDEVTIF--GLNYFKKHY 218
>gi|333905011|ref|YP_004478882.1| GTPase protein [Streptococcus parauberis KCTC 11537]
gi|333120276|gb|AEF25210.1| GTPase protein [Streptococcus parauberis KCTC 11537]
gi|456370989|gb|EMF49885.1| 50S ribosomal subunit maturation GTPase [Streptococcus parauberis
KRS-02109]
gi|457095374|gb|EMG25869.1| 50S ribosomal subunit maturation GTPase [Streptococcus parauberis
KRS-02083]
Length = 284
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 119/232 (51%), Gaps = 23/232 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLK----FLQAHVRNLRKSDYDASSDT 142
A + KEW F+++Q + +NS + VK+ + + ++ LR D +T
Sbjct: 64 ADKSMTKEWRQFYEKQGIKTLAINSKEQSTVKKVTEAAKDLMADKIQRLR--DRGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D +V KLALTGAI D + E+ G+ F + Y
Sbjct: 169 EILDTPGILWPKFEDQKVGLKLALTGAIKDQLLPMDEVT--IFGLNYFKEHY 218
>gi|307273137|ref|ZP_07554383.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0855]
gi|312903394|ref|ZP_07762574.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0635]
gi|422689281|ref|ZP_16747393.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0630]
gi|306510122|gb|EFM79146.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0855]
gi|310633270|gb|EFQ16553.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0635]
gi|315577620|gb|EFU89811.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0630]
Length = 292
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 115/224 (51%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R +++++ VDI+ E+ DAR+P SS DQ+ P R+++LNK
Sbjct: 14 WFPGHMAKARREVSEKIKYVDIVFELVDARLPLSSRNPMMDQIVQQKP-----RLVLLNK 68
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSD 141
DLA Q K+W +F ++ + +N+ + + + + ++ R+
Sbjct: 69 GDLADNDQNKKWQHYFQKKGYQTLVINAQQNKGINKIVPAAKEALKEKLAREQAKGLKPR 128
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M +GIPNVGKS L N L +G+ + A +PG TK L+ S
Sbjct: 129 AIRAMCIGIPNVGKSTLMNRL--VGK---------KIAQTGNKPGVTKGQQWLRSGSQ-- 175
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D E+ KLALTGAI D + +LA Y L
Sbjct: 176 LELLDTPGILWPKFEDEEIGKKLALTGAIKDQLLHLDDLAIYGL 219
>gi|29376208|ref|NP_815362.1| GTPase [Enterococcus faecalis V583]
gi|255972708|ref|ZP_05423294.1| GTP-binding protein [Enterococcus faecalis T1]
gi|255975760|ref|ZP_05426346.1| GTP-binding protein [Enterococcus faecalis T2]
gi|256619149|ref|ZP_05475995.1| GTP-binding protein [Enterococcus faecalis ATCC 4200]
gi|256853211|ref|ZP_05558581.1| GTP-binding protein [Enterococcus faecalis T8]
gi|256959065|ref|ZP_05563236.1| GTP-binding protein [Enterococcus faecalis DS5]
gi|256961842|ref|ZP_05566013.1| GTP-binding protein [Enterococcus faecalis Merz96]
gi|257079096|ref|ZP_05573457.1| GTP-binding protein [Enterococcus faecalis JH1]
gi|257082465|ref|ZP_05576826.1| GTP-binding protein [Enterococcus faecalis E1Sol]
gi|257085097|ref|ZP_05579458.1| GTP-binding protein [Enterococcus faecalis Fly1]
gi|257086658|ref|ZP_05581019.1| GTP-binding protein [Enterococcus faecalis D6]
gi|257416179|ref|ZP_05593173.1| GTP-binding protein [Enterococcus faecalis ARO1/DG]
gi|257419381|ref|ZP_05596375.1| GTP-binding protein [Enterococcus faecalis T11]
gi|257422525|ref|ZP_05599515.1| GTP-binding protein [Enterococcus faecalis X98]
gi|294781633|ref|ZP_06746969.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
PC1.1]
gi|300861139|ref|ZP_07107226.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TUSoD Ef11]
gi|384518682|ref|YP_005705987.1| ribosomal biogenesis GTPase [Enterococcus faecalis 62]
gi|397699964|ref|YP_006537752.1| ribosomal biogenesis GTPase [Enterococcus faecalis D32]
gi|421512269|ref|ZP_15959079.1| 50S ribosomal subunit maturation GTPase RbgA ( YlqF) [Enterococcus
faecalis ATCC 29212]
gi|428767091|ref|YP_007153202.1| GTP-binding protein [Enterococcus faecalis str. Symbioflor 1]
gi|430370587|ref|ZP_19429112.1| GTP-binding protein [Enterococcus faecalis M7]
gi|29343671|gb|AAO81432.1| GTPase of unknown function [Enterococcus faecalis V583]
gi|255963726|gb|EET96202.1| GTP-binding protein [Enterococcus faecalis T1]
gi|255968632|gb|EET99254.1| GTP-binding protein [Enterococcus faecalis T2]
gi|256598676|gb|EEU17852.1| GTP-binding protein [Enterococcus faecalis ATCC 4200]
gi|256711670|gb|EEU26708.1| GTP-binding protein [Enterococcus faecalis T8]
gi|256949561|gb|EEU66193.1| GTP-binding protein [Enterococcus faecalis DS5]
gi|256952338|gb|EEU68970.1| GTP-binding protein [Enterococcus faecalis Merz96]
gi|256987126|gb|EEU74428.1| GTP-binding protein [Enterococcus faecalis JH1]
gi|256990495|gb|EEU77797.1| GTP-binding protein [Enterococcus faecalis E1Sol]
gi|256993127|gb|EEU80429.1| GTP-binding protein [Enterococcus faecalis Fly1]
gi|256994688|gb|EEU81990.1| GTP-binding protein [Enterococcus faecalis D6]
gi|257158007|gb|EEU87967.1| GTP-binding protein [Enterococcus faecalis ARO1/DG]
gi|257161209|gb|EEU91169.1| GTP-binding protein [Enterococcus faecalis T11]
gi|257164349|gb|EEU94309.1| GTP-binding protein [Enterococcus faecalis X98]
gi|294451329|gb|EFG19795.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
PC1.1]
gi|295113050|emb|CBL31687.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
7L76]
gi|300850178|gb|EFK77928.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TUSoD Ef11]
gi|323480815|gb|ADX80254.1| ribosomal biogenesis GTPase [Enterococcus faecalis 62]
gi|397336603|gb|AFO44275.1| ribosomal biogenesis GTPase [Enterococcus faecalis D32]
gi|401674613|gb|EJS80961.1| 50S ribosomal subunit maturation GTPase RbgA ( YlqF) [Enterococcus
faecalis ATCC 29212]
gi|427185264|emb|CCO72488.1| GTP-binding protein [Enterococcus faecalis str. Symbioflor 1]
gi|429515351|gb|ELA04867.1| GTP-binding protein [Enterococcus faecalis M7]
Length = 283
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 115/224 (51%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R +++++ VDI+ E+ DAR+P SS DQ+ P R+++LNK
Sbjct: 5 WFPGHMAKARREVSEKIKYVDIVFELVDARLPLSSRNPMMDQIVQQKP-----RLVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSD 141
DLA Q K+W +F ++ + +N+ + + + + ++ R+
Sbjct: 60 GDLADNDQNKKWQHYFQKKGYQTLVINAQQNKGINKIVPAAKEALKEKLAREQAKGLKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M +GIPNVGKS L N L +G+ + A +PG TK L+ S
Sbjct: 120 AIRAMCIGIPNVGKSTLMNRL--VGK---------KIAQTGNKPGVTKGQQWLRSGSQ-- 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D E+ KLALTGAI D + +LA Y L
Sbjct: 167 LELLDTPGILWPKFEDEEIGKKLALTGAIKDQLLHLDDLAIYGL 210
>gi|229367336|gb|ACQ58648.1| Mitochondrial GTPase 1, mitochondrial precursor [Anoplopoma
fimbria]
Length = 319
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 123/234 (52%), Gaps = 27/234 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA + + + VD I+E+ DARIPFS + F + + P +L+LNK
Sbjct: 27 WFPGHMAKGLKQMRANLKNVDCIIEIHDARIPFSGKNPVFQETLDVRP-----HLLILNK 81
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNK---DNVKEFL----KFLQAHVRNLRKSDY 136
MDLA + + + + + K DN+K+ + + +++ R R D
Sbjct: 82 MDLADLSNKQRILKKLQKNGVRNVLFTDSLKQRDDNIKKLVPKVVEIIESKPRFNRDEDI 141
Query: 137 DASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LK 195
+ +M++G+PNVGKS+L NSL R T +KG R + V +PG TK + + ++
Sbjct: 142 NYC-----LMVIGMPNVGKSSLINSL----RRTNLKKG--RASRVGGEPGITKAVLTKIQ 190
Query: 196 IASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ P +++LDTPG+LPP+I VE KLAL G I D VG +A Y L LN
Sbjct: 191 VCERPIMHLLDTPGVLPPKIESVETGMKLALCGTILDHLVGEDIIADYLLNSLN 244
>gi|307289193|ref|ZP_07569149.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0109]
gi|306499902|gb|EFM69263.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0109]
Length = 292
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 115/224 (51%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R +++++ VDI+ E+ DAR+P SS DQ+ P R+++LNK
Sbjct: 14 WFPGHMAKARREVSEKIKYVDIVFELVDARLPLSSRNPMMDQIVQQKP-----RLVLLNK 68
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSD 141
DLA Q K+W +F ++ + +N+ + + + + ++ R+
Sbjct: 69 GDLADNDQNKKWQHYFQKKGYQTLVINAQQNKGINKIVPAAKEALKEKLAREQAKGLKPR 128
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M +GIPNVGKS L N L +G+ + A +PG TK L+ S
Sbjct: 129 AIRAMCIGIPNVGKSTLMNRL--VGK---------KIAQTGNKPGVTKGQQWLRSGSQ-- 175
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D E+ KLALTGAI D + +LA Y L
Sbjct: 176 LELLDTPGILWPKFEDEEIGKKLALTGAIKDQLLHLDDLAIYGL 219
>gi|256762585|ref|ZP_05503165.1| GTP-binding protein, partial [Enterococcus faecalis T3]
gi|256683836|gb|EEU23531.1| GTP-binding protein [Enterococcus faecalis T3]
Length = 278
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 115/224 (51%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R +++++ VDI+ E+ DAR+P SS DQ+ P R+++LNK
Sbjct: 20 WFPGHMAKARREVSEKIKYVDIVFELVDARLPLSSRNPMMDQIVQQKP-----RLVLLNK 74
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSD 141
DLA Q K+W +F ++ + +N+ + + + + ++ R+
Sbjct: 75 GDLADNDQNKKWQHYFQKKGYQTLVINAQQNKGINKIVPAAKEALKEKLAREQAKGLKPR 134
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M +GIPNVGKS L N L +G+ + A +PG TK L+ S
Sbjct: 135 AIRAMCIGIPNVGKSTLMNRL--VGK---------KIAQTGNKPGVTKGQQWLRSGSQ-- 181
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D E+ KLALTGAI D + +LA Y L
Sbjct: 182 LELLDTPGILWPKFEDEEIGKKLALTGAIKDQLLHLDDLAIYGL 225
>gi|427417693|ref|ZP_18907876.1| ribosome biogenesis GTP-binding protein YlqF [Leptolyngbya sp. PCC
7375]
gi|425760406|gb|EKV01259.1| ribosome biogenesis GTP-binding protein YlqF [Leptolyngbya sp. PCC
7375]
Length = 304
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 129/254 (50%), Gaps = 30/254 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A R++ +++ VD++LE+RDARIP ++ HHP R+LVL
Sbjct: 8 WYPGHIAKAERSLKEQLKRVDVVLEIRDARIPLAT-------HHPEVDDWIGDKSRVLVL 60
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDAS 139
N++D+ S + W T+F +Q ++ NS V+ L+ Q N R+
Sbjct: 61 NRVDMISAEARQSWQTWFKEQGQAAYFTNSKQGKGVQNLLRAAQDAGKAMNERRKRRGMK 120
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
V +++G PNVGKSAL N L + ++ +E+ + G T+ + ++I+
Sbjct: 121 PRPVRAVVIGFPNVGKSALINRLLK-RKVVVSER----------RAGVTRQLRWVRISDE 169
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGI---LNFSDEYKK 256
I +LD PGI+P +++D +V KLA+ IG + + +A FL + L+ DE
Sbjct: 170 --IELLDAPGIIPLKLNDQDVALKLAICDDIGGAAYDTQRVAAAFLDLIQALDQRDESGG 227
Query: 257 WAKFSINQINKPLT 270
+ ++ + PLT
Sbjct: 228 YEGAIASRYDTPLT 241
>gi|315613172|ref|ZP_07888082.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis ATCC 49296]
gi|315314734|gb|EFU62776.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis ATCC 49296]
Length = 283
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 117/231 (50%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIKIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKKHY 218
>gi|312865180|ref|ZP_07725408.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus downei
F0415]
gi|311099291|gb|EFQ57507.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus downei
F0415]
Length = 283
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL------RKSDYDASS 140
A P K+W +F++Q + +N+ + VK+ L +NL R +
Sbjct: 64 ADPLLIKDWQAYFEKQGIKTLLINAKEQSTVKK----LTDAAKNLMSDKLERLREKGIQK 119
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ + M++GIPN GKS L N L GK + A V +PG TK LK S+
Sbjct: 120 EGLRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNK 166
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
++ +LDTPGIL P+ D EV KLALTGAI D+ + E+ + G+ F + Y
Sbjct: 167 DLEILDTPGILWPKFEDQEVGLKLALTGAIKDNLLPMDEVTIF--GLNYFKENY 218
>gi|419779267|ref|ZP_14305143.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK10]
gi|383186295|gb|EIC78765.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK10]
Length = 283
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 117/231 (50%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIKIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKKHY 218
>gi|293365453|ref|ZP_06612162.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
ATCC 35037]
gi|307703409|ref|ZP_07640351.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|322375249|ref|ZP_08049762.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
C300]
gi|419780107|ref|ZP_14305957.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK100]
gi|291315821|gb|EFE56265.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
ATCC 35037]
gi|307622816|gb|EFO01811.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|321279512|gb|EFX56552.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
C300]
gi|383185266|gb|EIC77762.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK100]
Length = 283
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 117/231 (50%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIKIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKKHY 218
>gi|449964553|ref|ZP_21811368.1| ribosomal biogenesis GTPase [Streptococcus mutans 15VF2]
gi|449172398|gb|EMB75026.1| ribosomal biogenesis GTPase [Streptococcus mutans 15VF2]
Length = 283
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 117/221 (52%), Gaps = 17/221 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIIGDKPKLIILNKVDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A T EW FF++Q + VNS + VK+ + + + + ++ + +T+
Sbjct: 64 ADSTCTAEWCNFFEKQGIKALAVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPNVGKS L N L GK + A V +PG TK LK S+ N+ +
Sbjct: 124 TMIVGIPNVGKSTLMNRLA----------GK-KIAIVGNKPGVTKGQQWLK--SNKNLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
LDTPGIL P+ + + KLA+TGAI D+ + E+ + L
Sbjct: 171 LDTPGILWPKFEEEAIGLKLAMTGAIKDNLLPMDEITIFGL 211
>gi|419782252|ref|ZP_14308061.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK610]
gi|421488624|ref|ZP_15936012.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK304]
gi|383183356|gb|EIC75893.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK610]
gi|400367841|gb|EJP20856.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK304]
Length = 283
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 117/231 (50%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIKIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLDYFKKHY 218
>gi|312111696|ref|YP_003990012.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
Y4.1MC1]
gi|336236071|ref|YP_004588687.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus
thermoglucosidasius C56-YS93]
gi|423720614|ref|ZP_17694796.1| ribosome biogenesis GTP-binding protein ylqF [Geobacillus
thermoglucosidans TNO-09.020]
gi|311216797|gb|ADP75401.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
Y4.1MC1]
gi|335362926|gb|AEH48606.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus
thermoglucosidasius C56-YS93]
gi|383365967|gb|EID43258.1| ribosome biogenesis GTP-binding protein ylqF [Geobacillus
thermoglucosidans TNO-09.020]
Length = 281
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 127/251 (50%), Gaps = 36/251 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+DI+ E+ DARIP SS +++ + P RI++LNK
Sbjct: 5 WFPGHMAKAKREVQEKLKLIDIVFELLDARIPMSSRNPMINEILGNKP-----RIVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKS 134
D+A ++WI +F QQ + +++ +K+ + KF + + ++
Sbjct: 60 ADMADEAATQQWIAYFQQQQLRALAIDAQTGTGIKQIVAVSKEMLKDKFAKMAAKGIK-- 117
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ + +++GIPNVGKS L N L GR A +PG TK +
Sbjct: 118 ----NPRPMRALIVGIPNVGKSTLINRLA--GR---------NIAKTGDKPGVTKAQQWI 162
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
K+ + +LDTPGIL P+ + EV KLA TGAI D+ + +++A Y L L
Sbjct: 163 KVGKE--MELLDTPGILWPKFEEEEVGLKLATTGAIKDTILNLQDVAVYALNFLKQHYPE 220
Query: 255 KKWAKFSINQI 265
+ ++S++ I
Sbjct: 221 RLKERYSLDDI 231
>gi|256965039|ref|ZP_05569210.1| GTP-binding protein [Enterococcus faecalis HIP11704]
gi|257089970|ref|ZP_05584331.1| GTP-binding protein [Enterococcus faecalis CH188]
gi|256955535|gb|EEU72167.1| GTP-binding protein [Enterococcus faecalis HIP11704]
gi|256998782|gb|EEU85302.1| GTP-binding protein [Enterococcus faecalis CH188]
Length = 283
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 115/224 (51%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R +++++ VDI+ E+ DAR+P SS DQ+ P R+++LNK
Sbjct: 5 WFPGHMAKARREVSEKIKYVDIVFELVDARLPLSSRNPMMDQIVQQKP-----RLVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSD 141
DLA Q K+W +F ++ + +N+ + + + + ++ R+
Sbjct: 60 GDLADNDQNKKWQHYFQKKGYQTLVINAQQNKGINKIVPAAKEALKEKLAREQAKGLKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M +GIPNVGKS L N L +G+ + A +PG TK L+ S
Sbjct: 120 AIRAMCIGIPNVGKSTLMNRL--VGK---------KIAQTGNKPGVTKGQQWLRSGSQ-- 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D E+ KLALTGAI D + +LA Y L
Sbjct: 167 LELLDTPGILWPKFEDEEIGKKLALTGAIKDQLLHLDDLAIYGL 210
>gi|421277395|ref|ZP_15728215.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SPAR10]
gi|395876676|gb|EJG87752.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SPAR10]
Length = 283
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 121/243 (49%), Gaps = 21/243 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L R+L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPML--TKIIGDKPRLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPALTKEWRQHFESQGIQTLAINSKEQITVKVVTDAAKKLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSIN 263
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F Y + +
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKTHYPEKLQERFK 227
Query: 264 QIN 266
Q+N
Sbjct: 228 QMN 230
>gi|331266373|ref|YP_004326003.1| GTP-binding protein, ribosomal biogenesis GTPase [Streptococcus
oralis Uo5]
gi|326683045|emb|CBZ00662.1| GTP-binding protein, ribosomal biogenesis GTPase [Streptococcus
oralis Uo5]
Length = 283
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 117/231 (50%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIKIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLDYFKKHY 218
>gi|47570717|ref|ZP_00241305.1| GTPase of unknown function [Bacillus cereus G9241]
gi|47552615|gb|EAL11078.1| GTPase of unknown function [Bacillus cereus G9241]
Length = 225
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 116/228 (50%), Gaps = 31/228 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +F ++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDHLTKQWIAYFKEKGHMAISINAQAGQGMKE----IAAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L
Sbjct: 165 KE--MELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYAL 210
>gi|385825991|ref|YP_005862333.1| hypothetical protein [Lactobacillus johnsonii DPC 6026]
gi|329667435|gb|AEB93383.1| hypothetical protein LJP_1058c [Lactobacillus johnsonii DPC 6026]
Length = 279
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 125/249 (50%), Gaps = 29/249 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + D + L+D+++EV DAR+P SS QL P I+VLNK
Sbjct: 6 WYPGHMNKAKNQLEDNLDLIDVLIEVLDARLPVSSRNPMIGQLTKKKP-----HIIVLNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD----YDAS 139
DLA P Q K+WI ++ +++ + N+ K ++ + +K+D AS
Sbjct: 61 ADLADPIQTKKWIRYYQDDGNFVISMDAQHTTNMTSLFKIIKLAGK--KKTDKLIAKGAS 118
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ + V + GIPN GKS + N + +GR A V +PG T+ LK +
Sbjct: 119 NPMIRVAIAGIPNCGKSTIINRM--VGR---------NAAIVGDKPGVTRGQSWLK--TK 165
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKKW 257
N+ +LDTPGIL P+ D EV KLA GAI ++A + + L N+ D+ K+
Sbjct: 166 TNVQILDTPGILWPKFSDQEVGYKLAACGAIKADIFHPDDVALFVIEFLKQNYRDDLVKF 225
Query: 258 AKFSINQIN 266
A+ S +++
Sbjct: 226 ARISSEEMD 234
>gi|56964050|ref|YP_175781.1| GTPase [Bacillus clausii KSM-K16]
gi|56910293|dbj|BAD64820.1| GTPase [Bacillus clausii KSM-K16]
Length = 288
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 104/214 (48%), Gaps = 23/214 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R I +++ L+D+++E+ DAR+P SS D+L P R+++LNK
Sbjct: 6 WYPGHMAKARREIKEKLKLIDVVIELVDARLPQSSRNPLIDELAQQKP-----RLMLLNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRK--SDYDASSD 141
DLA P + + W FF + +N+ VK + L +
Sbjct: 61 ADLADPAETERWRAFFKRTGAEVLAINAQTGAGVKNIAPACKTLASALYQKWEQKGMKPR 120
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ ++LGIPNVGKS L N L R A V +PG TK +K+
Sbjct: 121 PLRAIILGIPNVGKSTLINRLVN-----------KRQAKVGDRPGVTKQQQWIKVKQE-- 167
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFV 235
+ +LDTPGIL P+ D EV +LA TGAI D +
Sbjct: 168 LELLDTPGILWPKFDDQEVGLRLAATGAIKDELL 201
>gi|28971414|emb|CAD70603.1| hypothetical protein [Bacillus megaterium]
Length = 361
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 133/248 (53%), Gaps = 30/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+DI+ E+ DARIP SS D++ + P RI++LNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDIVYELVDARIPQSSRNPMIDEIIVNKP-----RIVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDAS 139
+D A P ++W+ ++ +Q + +++ +K+ + + LQ +R
Sbjct: 60 VDKADPRVTQQWLDYYKEQGIYALAIDAQAGKGMKQIVSSSKELLQEKFDRMRAKGVKKP 119
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS L N L A++K A +PG T+ +K+ +
Sbjct: 120 R-AIRAMIVGIPNVGKSTLINRL-------ASKK----IAKTGDRPGVTQAQQWIKVGNE 167
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKW 257
+ +LDTPGIL P+ D V KLA TGAI D+ + +++A Y L L + ++ K+
Sbjct: 168 --LELLDTPGILWPKFEDETVGYKLATTGAIKDTILNMQDVAVYALRFLTSHYPEQLKQ- 224
Query: 258 AKFSINQI 265
++++N+I
Sbjct: 225 -RYNLNEI 231
>gi|306829521|ref|ZP_07462711.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
ATCC 6249]
gi|304428607|gb|EFM31697.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
ATCC 6249]
Length = 312
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 124/251 (49%), Gaps = 26/251 (10%)
Query: 7 SLFKLAREIGTAVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQL 66
+ F + R I A Q W+ HM+ A R + + + VD + + DAR+P SS+ L
Sbjct: 20 TFFLVGRGIIMATIQ-----WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML 74
Query: 67 RNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKF 123
+ ++L+LNK DLA P KEW +F+ Q + +NS VK + K
Sbjct: 75 --NKIVGDKPKLLILNKADLADPVMTKEWRQYFESQGIQTLAINSKEHVTVKVVTDAAKK 132
Query: 124 LQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSP 183
L A + R+ + +T+ M++GIPN GKS L N L GK + A V
Sbjct: 133 LMAD-KIARQKERGIKIETLRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGN 180
Query: 184 QPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
+PG TK LK ++ ++ +LDTPGIL P+ D V KLALTGAI D + E+ +
Sbjct: 181 KPGVTKGQQWLK--TNKDLEILDTPGILWPKFEDDAVALKLALTGAIKDQLLPMDEVTIF 238
Query: 244 FLGILNFSDEY 254
G+ F Y
Sbjct: 239 --GLNYFKKHY 247
>gi|314933424|ref|ZP_07840789.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus caprae
C87]
gi|313653574|gb|EFS17331.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus caprae
C87]
Length = 288
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 117/227 (51%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D++ P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVIKQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK--EFLKFLQAHVRNLRKSDYDASSD 141
D+ + + ++W FF +Q V++ + N+K E + R+ +
Sbjct: 60 KDMTNLKELEKWEGFFKEQGFFPVAVDAKHGKNLKNVEAEAIKATKEKFEREKEKGLKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS L N L K A +PG TK +K+ +
Sbjct: 120 AIRAMIVGIPNVGKSTLINKL-----------AKRSIAQTGNKPGVTKQQQWIKVGK--S 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L +
Sbjct: 167 LQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFM 213
>gi|417849129|ref|ZP_12495055.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK1080]
gi|339457126|gb|EGP69706.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK1080]
Length = 283
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 114/222 (51%), Gaps = 19/222 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D V KLALTGAI D + E+ + L
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIFGL 211
>gi|406577629|ref|ZP_11053229.1| GTPase YlqF [Streptococcus sp. GMD6S]
gi|406588490|ref|ZP_11063094.1| GTPase YlqF [Streptococcus sp. GMD1S]
gi|419815963|ref|ZP_14340365.1| GTPase YlqF [Streptococcus sp. GMD2S]
gi|404459694|gb|EKA06021.1| GTPase YlqF [Streptococcus sp. GMD6S]
gi|404464439|gb|EKA09979.1| GTPase YlqF [Streptococcus sp. GMD2S]
gi|404467876|gb|EKA12933.1| GTPase YlqF [Streptococcus sp. GMD1S]
Length = 283
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + +D + + DAR+P SS+ L + ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFIDFVTILVDARLPLSSQNPML--NKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F Y
Sbjct: 170 ILDTPGILWPKFEDDAVALKLALTGAIKDQLLPMDEVTIF--GLNYFKKHY 218
>gi|322387851|ref|ZP_08061459.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis ATCC 700779]
gi|419843911|ref|ZP_14367216.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis ATCC 700779]
gi|321141353|gb|EFX36850.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis ATCC 700779]
gi|385702335|gb|EIG39480.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis ATCC 700779]
Length = 283
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 121/243 (49%), Gaps = 21/243 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L R+L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPML--TKIIGDKPRLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPALTKEWRQHFESQGIQTLAINSKEQITVKVVTDAAKKLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSIN 263
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F Y + +
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKTHYPEKLQERFK 227
Query: 264 QIN 266
Q+N
Sbjct: 228 QMN 230
>gi|418967252|ref|ZP_13518922.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK616]
gi|383344786|gb|EID22938.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK616]
Length = 283
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAITKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIKIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKEHY 218
>gi|332252806|ref|XP_003275545.1| PREDICTED: mitochondrial GTPase 1 [Nomascus leucogenys]
Length = 456
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 120/232 (51%), Gaps = 25/232 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA + + + LVD I+EV DARIP S F + P +LVLNK
Sbjct: 156 WFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPH-----LLVLNK 210
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHV----RNLRKSDYDA 138
MDLA T+ ++ + + + + + KD NVK+ + + + R R+ + +
Sbjct: 211 MDLADLTEQQKIMQRLEGEGLKNVVFTNCVKDENVKQIIPMVTELIGRSHRYHRRENLE- 269
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIA 197
+M++G+PNVGKS+L NSL R KGK V +PG T+ + S + ++
Sbjct: 270 ----YCIMVIGVPNVGKSSLINSL----RRQHLRKGKA--TRVGGEPGITRAVMSKIHVS 319
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
P +++LDTPG+L P I VE KLAL G + D VG + +A Y L LN
Sbjct: 320 ERPLMFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 371
>gi|417924417|ref|ZP_12567859.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK569]
gi|342835941|gb|EGU70168.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK569]
Length = 283
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAITKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIKIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKEHY 218
>gi|295706299|ref|YP_003599374.1| ribosome biogenesis GTPase A [Bacillus megaterium DSM 319]
gi|338819264|sp|D5DJL5.1|RBGA_BACMD RecName: Full=Ribosome biogenesis GTPase A
gi|294803958|gb|ADF41024.1| ribosome biogenesis GTPase A [Bacillus megaterium DSM 319]
Length = 288
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 133/248 (53%), Gaps = 30/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+DI+ E+ DARIP SS D++ + P RI++LNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDIVYELVDARIPQSSRNPMIDEIIVNKP-----RIVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDAS 139
+D A P ++W+ ++ +Q + +++ +K+ + + LQ +R
Sbjct: 60 VDKADPRVTQQWLDYYKEQGIYALAIDAQAGKGMKQIVSSSKELLQEKFDRMRAKGVKKP 119
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS L N L A++K A +PG T+ +K+ +
Sbjct: 120 R-AIRAMIVGIPNVGKSTLINRL-------ASKK----IAKTGDRPGVTQAQQWIKVGNE 167
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKW 257
+ +LDTPGIL P+ D V KLA TGAI D+ + +++A Y L L + ++ K+
Sbjct: 168 --LELLDTPGILWPKFEDETVGYKLATTGAIKDTILNMQDVAVYALRFLTSHYPEQLKQ- 224
Query: 258 AKFSINQI 265
++++N+I
Sbjct: 225 -RYNLNEI 231
>gi|449881531|ref|ZP_21784505.1| ribosomal biogenesis GTPase [Streptococcus mutans SA38]
gi|449251169|gb|EMC49193.1| ribosomal biogenesis GTPase [Streptococcus mutans SA38]
Length = 283
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 116/221 (52%), Gaps = 17/221 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIIGDKPKLIILNKVDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A T EW FF +Q + VNS + VK+ + + + + ++ + +T+
Sbjct: 64 ADSTCTAEWCNFFKKQGIKALAVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPNVGKS L N L GK + A V +PG TK LK S+ N+ +
Sbjct: 124 TMIVGIPNVGKSTLMNRLA----------GK-KIAIVGNKPGVTKGQQWLK--SNKNLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
LDTPGIL P+ + V KLA+TGAI D+ + E+ + L
Sbjct: 171 LDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIFGL 211
>gi|229162774|ref|ZP_04290731.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus R309803]
gi|228620656|gb|EEK77525.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus R309803]
Length = 296
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 31/226 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ H P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A K+WI +F ++ + +N+ +KE + A + L K +D
Sbjct: 60 ADMADDRLTKQWIAYFKEKGHMAISINAQAGQGMKE----IAAACKVLVKEKFDKMVAKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y
Sbjct: 165 KE--MELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAVY 208
>gi|417935868|ref|ZP_12579185.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis X]
gi|343402777|gb|EGV15282.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis X]
Length = 283
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 121/243 (49%), Gaps = 21/243 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L R+L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPML--TKIIGDKPRLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPALTKEWRQHFESQGIQTLAINSKEQITVKVVTDAAKKLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSIN 263
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F Y + +
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKTHYPEKLQERFK 227
Query: 264 QIN 266
Q+N
Sbjct: 228 QMN 230
>gi|386317016|ref|YP_006013180.1| ribosomal biogenesis GTPase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|410494750|ref|YP_006904596.1| GTP-binding protein engA [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|417928741|ref|ZP_12572129.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
gi|323127303|gb|ADX24600.1| ribosomal biogenesis GTPase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|340766615|gb|EGR89141.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
gi|410439910|emb|CCI62538.1| GTP-binding protein engA [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 282
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 115/223 (51%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A T+ KEW +++ Q + +NS + VK E K L A ++ LR D +T
Sbjct: 64 ADATRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEAAKELMADKIKRLR--DRGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D V KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|19746107|ref|NP_607243.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS8232]
gi|94994427|ref|YP_602525.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS10750]
gi|19748281|gb|AAL97742.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|94547935|gb|ABF37981.1| GTP-binding protein [Streptococcus pyogenes MGAS10750]
Length = 282
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 115/223 (51%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A T+ KEW +++ Q + +NS + VK E K L A ++ LR D +T
Sbjct: 64 ADATRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEAAKELMADKIKRLR--DRGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D V KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|386319473|ref|YP_006015636.1| GTP-binding protein [Staphylococcus pseudintermedius ED99]
gi|323464644|gb|ADX76797.1| GTP-binding protein, putative [Staphylococcus pseudintermedius
ED99]
Length = 290
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 139/284 (48%), Gaps = 40/284 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R + +++ VD++ E+ DARIPFSS D++ P R+++ NK
Sbjct: 5 WYPGHMAKAKREVTEQLKKVDVVFELVDARIPFSSRNPMIDEVIQQKP-----RVVIFNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNS-HNK--DNVKEFL------KFLQAHVRNLRKS 134
D+ + + ++W FF ++ V++ H K NV+E KF + V+ L+
Sbjct: 60 KDMTNLKEMEKWYAFFREKGAYPVAVDAKHGKGLKNVEEAAIEATREKFEREKVKGLKPR 119
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ M++GIPNVGKS L N L + A+ G +PG TK +
Sbjct: 120 -------AIRAMIVGIPNVGKSTLINKL---ANRSIAQTGN--------KPGVTKQQQWI 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
K+ ++ +LDTPGIL P+ D + KL+LTGAI DS V E+A Y L L D
Sbjct: 162 KVGK--SLQLLDTPGILWPKFEDQLIGKKLSLTGAIKDSIVHLDEVAIYGLEFLIEHDYE 219
Query: 255 KKWAKFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQV 298
A F I+ + L + G + G++ +R N D+ V
Sbjct: 220 ALLAHFKIDVLRDAEMLDWF--DAIGRKRGLL-QRGNEVDYEAV 260
>gi|196008297|ref|XP_002114014.1| hypothetical protein TRIADDRAFT_58045 [Trichoplax adhaerens]
gi|190583033|gb|EDV23104.1| hypothetical protein TRIADDRAFT_58045 [Trichoplax adhaerens]
Length = 278
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 117/238 (49%), Gaps = 36/238 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA + + D +LEVRDARIPFSS ++ + R+L+LNK DL
Sbjct: 20 WYPGHMAKGMHKMQAVLVRCDCVLEVRDARIPFSSRNEKF--SRILAGRPRVLILNKADL 77
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVM 146
++ K N G++S DN K F + +M
Sbjct: 78 SAKNTRKIIPAALRSMN--EHGISS---DNKKGFFR----------------------IM 110
Query: 147 LLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYVL 205
++G+PNVGKS++ N++ +I K K A V PG T+ + + +++ S+P +++
Sbjct: 111 VIGLPNVGKSSVINAIRRI------RKNKGNAAHVGGVPGITRAVQTNIEVCSNPKTFLV 164
Query: 206 DTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSIN 263
DTPGI+P + DVEV KLAL G I D +G + +A Y L LN ++ F ++
Sbjct: 165 DTPGIMPTYVRDVEVGFKLALVGTIKDHLIGEEHIADYLLFTLNRQKQFSYVEYFGLD 222
>gi|417788285|ref|ZP_12435968.1| 50S ribosomal subunit maturation GTPase RbgA [Lactobacillus
salivarius NIAS840]
gi|417810322|ref|ZP_12457001.1| GTP-binding protein [Lactobacillus salivarius GJ-24]
gi|418961322|ref|ZP_13513209.1| GTP-binding protein [Lactobacillus salivarius SMXD51]
gi|334308462|gb|EGL99448.1| 50S ribosomal subunit maturation GTPase RbgA [Lactobacillus
salivarius NIAS840]
gi|335349118|gb|EGM50618.1| GTP-binding protein [Lactobacillus salivarius GJ-24]
gi|380344989|gb|EIA33335.1| GTP-binding protein [Lactobacillus salivarius SMXD51]
Length = 285
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 110/218 (50%), Gaps = 16/218 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + + + VDI+LE+ DAR+P SS QL I+VL KMDL
Sbjct: 6 WFPGHMAKALRQVKENLKSVDIVLELVDARLPESSRNPQL--AEVLQDKPSIIVLTKMDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLR-KSDYDASSDTVTV 145
A P + K+WI +++ P+ VNS++ + K + L+ + + + +
Sbjct: 64 ADPAETKKWINYYESMGQPAIAVNSNSGNLKIIEKKIKEILADKLQSRKEKGIQNQKLRA 123
Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVL 205
M +GIPNVGKS L N L K A +PG TK LK ++ +L
Sbjct: 124 MCIGIPNVGKSTLLNHLV-----------KKNVAQTGNRPGVTKAQQWLKAGK--DLQLL 170
Query: 206 DTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
DTPGIL P+ D V KLALTGAI D+ ++A Y
Sbjct: 171 DTPGILWPKFEDPLVGKKLALTGAIKDTLYAKDDVALY 208
>gi|435853380|ref|YP_007314699.1| ribosome biogenesis GTP-binding protein YlqF [Halobacteroides
halobius DSM 5150]
gi|433669791|gb|AGB40606.1| ribosome biogenesis GTP-binding protein YlqF [Halobacteroides
halobius DSM 5150]
Length = 286
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 111/227 (48%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HMA A + + +R+ L+D+++E+ DARIP SS + DQL RRI+ LNK
Sbjct: 5 WYPGHMAKAMKKVKNRLDLIDVVIELLDARIPISSRNPDLDQL-----LEDKRRIIALNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRK--SDYDASSD 141
DLA+ +W +F Q +NS N VK+ + + +K +
Sbjct: 60 KDLANQGLTNQWQEYFSNQGISVAAMNSLNGKGVKKLFALANQLMVDKQKELAAQGRKRK 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ +M++GIPNVGKS L N L Q G K PG TK +K+
Sbjct: 120 DIRLMIVGIPNVGKSQLINQLSQKGATRTGNK-----------PGVTKAQQWIKLKE--G 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+LDTPG+L P+ + EV KLA+ GAI + + LA + +L
Sbjct: 167 FELLDTPGVLWPKFEEQEVGVKLAICGAIKEGNFDSELLAYKLVEML 213
>gi|406577937|ref|ZP_11053511.1| GTPase YlqF [Streptococcus sp. GMD6S]
gi|406587074|ref|ZP_11061987.1| GTPase YlqF [Streptococcus sp. GMD1S]
gi|419814646|ref|ZP_14339414.1| GTPase YlqF [Streptococcus sp. GMD2S]
gi|419817241|ref|ZP_14341408.1| GTPase YlqF [Streptococcus sp. GMD4S]
gi|404458911|gb|EKA05297.1| GTPase YlqF [Streptococcus sp. GMD6S]
gi|404466256|gb|EKA11605.1| GTPase YlqF [Streptococcus sp. GMD4S]
gi|404471552|gb|EKA16063.1| GTPase YlqF [Streptococcus sp. GMD2S]
gi|404473438|gb|EKA17776.1| GTPase YlqF [Streptococcus sp. GMD1S]
Length = 283
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 117/231 (50%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIKIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F Y
Sbjct: 170 ILDTPGILWPKFEDEIVALKLALTGAIKDQLLPMDEVTIF--GLNYFKKHY 218
>gi|226325141|ref|ZP_03800659.1| hypothetical protein COPCOM_02933 [Coprococcus comes ATCC 27758]
gi|225206489|gb|EEG88843.1| ribosome biogenesis GTP-binding protein YlqF [Coprococcus comes
ATCC 27758]
Length = 285
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 122/243 (50%), Gaps = 23/243 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A R + + + L+D+++E+ DAR+P SS + D+L + R+++LNK
Sbjct: 5 WYPGHMTKAKRMMQENIKLIDLVIELVDARVPMSSRNPDIDELGKNKA-----RLILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DLA Q +EWI +F + + VNS +K +Q + + D +
Sbjct: 60 ADLADEKQTEEWIGYFRGKGYSAVKVNSRKGGGIKSIQGVIQEACKEKTERDRKRGILNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M++GIPNVGKS N+L GK A +PG TK +++ + N
Sbjct: 120 PVRAMVVGIPNVGKSTFINALA----------GKA-CAKTGNKPGVTKGKQWIRL--NKN 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
+ +LDTPGIL P+ D +V +LA G+I D + +ELA + + + K++
Sbjct: 167 VELLDTPGILWPKFEDQQVGLRLAFIGSIKDEIMNLEELAAELISFMQDAYPGVLAEKYT 226
Query: 262 INQ 264
IN+
Sbjct: 227 INE 229
>gi|227872392|ref|ZP_03990739.1| GTP-binding protein [Oribacterium sinus F0268]
gi|227841752|gb|EEJ52035.1| GTP-binding protein [Oribacterium sinus F0268]
Length = 295
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 118/227 (51%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HMA A R + + +PL D+I+EV D+R P SS E DQL RIL+ NK
Sbjct: 5 WYPGHMAKAKRKMKEDLPLCDVIVEVIDSRCPNSSRNPEIDQLAKDKI-----RILLFNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA--SSD 141
+DLA + K ++ F ++ + G+++ N+ +VK K +Q + L + + SS
Sbjct: 60 LDLADDERSKLFMEDFHRRGFFTLGIDARNRASVKRVSKLIQEASQPLYEKNRKKGISSQ 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M+LGIPNVGKS N+ +GR TA K PG T+ +K+ N
Sbjct: 120 MVRAMVLGIPNVGKSTFINAF--VGRSTAKTGNK---------PGVTRGNQWIKL--DKN 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGI P+ V LAL G+I D + ++L YFL L
Sbjct: 167 VQLLDTPGITWPKFEREIVGYNLALIGSINDDILPIEDLVFYFLKYL 213
>gi|406026980|ref|YP_006725812.1| GTP-binding protein [Lactobacillus buchneri CD034]
gi|405125469|gb|AFS00230.1| GTP-binding protein [Lactobacillus buchneri CD034]
Length = 290
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 19/222 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMD 85
W+ HMA A R + + LVD++ EV DARIP +S+ ++R S+ + + ++ K D
Sbjct: 7 WFPGHMAKAIRQFEENLSLVDVVFEVIDARIPLTSQNPEIRR---ISADKPHLYIMTKRD 63
Query: 86 LASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTV 143
LA P W+ +F + N P+ +++ K + + + +R+ R+ D +
Sbjct: 64 LADPQLTNAWLQYFAEHNQPAIAIDAKTKFGINNVISVISPILRDKLQREQDKGMKKRPI 123
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
+ +G+PNVGKS + N L + R R A V +PG TK LK S+ +
Sbjct: 124 RAISVGVPNVGKSTVLNRL--VNR---------RAAQVGNRPGLTKGQQWLK--SNDKLE 170
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ EV KLALTGAI +S ++A + L
Sbjct: 171 LLDTPGILWPKFSSQEVADKLALTGAIKESVYASDDIALFGL 212
>gi|402300897|ref|ZP_10820338.1| hypothetical protein BalcAV_17028 [Bacillus alcalophilus ATCC
27647]
gi|401723983|gb|EJS97390.1| hypothetical protein BalcAV_17028 [Bacillus alcalophilus ATCC
27647]
Length = 287
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 117/224 (52%), Gaps = 27/224 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ ++D+++E+ DARIP SS D+L H P R+++LNK
Sbjct: 5 WFPGHMAKARREVTEQLKMIDVVIELVDARIPLSSRNPMIDKLVEHKP-----RLILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK----EFLKFLQAHVRNLRKSDYDAS 139
DLA ++ +W ++F++ +NS N + E K + ++
Sbjct: 60 ADLADESRTAKWKSYFEKLGYSVLVINSQNGKGTEKISGECQKLATPMLEKMKAKGMKPR 119
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ + M+LGIPNVGKS L N L AA+ R A V +PG TK +K+
Sbjct: 120 A--IRAMILGIPNVGKSTLINRL-------AAK----RTAQVGDRPGVTKRQQWIKVGKQ 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
+ +LDTPGIL P+ D + +LA TGAI D + +++A +
Sbjct: 167 --LELLDTPGILWPKFEDQQTGFRLAATGAIKDEILDFQDIALF 208
>gi|291550684|emb|CBL26946.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus torques
L2-14]
Length = 282
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 115/230 (50%), Gaps = 23/230 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A R + + + L+D+I+E+ DAR+P SS + D+L + R+++LNK
Sbjct: 5 WYPGHMTKARRMMQENIKLIDLIIELVDARVPLSSRNPDIDELGKNKA-----RLILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DLA + EW+ +F +Q VNS +K +Q + + D +
Sbjct: 60 ADLAEDRRNDEWMEYFKKQGYSVVKVNSKKGGGIKSIQSVIQEACKEKMERDRKRGILNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M++GIPNVGKS N+L G+ A K PG TK +++ + N
Sbjct: 120 PVRAMVVGIPNVGKSTFINALA--GKACAKTGNK---------PGVTKGKQWIRL--NKN 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFS 251
+ +LDTPGIL P+ D V +LA G+I D + +ELA + LN S
Sbjct: 167 VELLDTPGILWPKFEDQTVGLRLAFIGSIKDEILQTEELASELVKFLNQS 216
>gi|90961694|ref|YP_535610.1| GTP-binding protein [Lactobacillus salivarius UCC118]
gi|227890782|ref|ZP_04008587.1| GTP-binding protein [Lactobacillus salivarius ATCC 11741]
gi|301300771|ref|ZP_07206955.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
salivarius ACS-116-V-Col5a]
gi|385840372|ref|YP_005863696.1| GTP-binding protein [Lactobacillus salivarius CECT 5713]
gi|90820888|gb|ABD99527.1| GTP-binding protein [Lactobacillus salivarius UCC118]
gi|227867191|gb|EEJ74612.1| GTP-binding protein [Lactobacillus salivarius ATCC 11741]
gi|300214493|gb|ADJ78909.1| GTP-binding protein [Lactobacillus salivarius CECT 5713]
gi|300851621|gb|EFK79321.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
salivarius ACS-116-V-Col5a]
Length = 285
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 109/218 (50%), Gaps = 16/218 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + + + VDI+LE+ DAR+P SS QL I+VL KMDL
Sbjct: 6 WFPGHMAKALRQVKENLKSVDIVLELVDARLPESSRNPQL--AEVLQDKPSIIVLTKMDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLR-KSDYDASSDTVTV 145
A P + K WI +++ P+ VNS++ + K + L+ + + + +
Sbjct: 64 ADPAETKRWINYYESMGQPAIAVNSNSGNLKIIEKKIKEILADKLQSRKEKGIQNQKLRA 123
Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVL 205
M +GIPNVGKS L N L K A +PG TK LK ++ +L
Sbjct: 124 MCIGIPNVGKSTLLNHLV-----------KKNVAQTGNRPGVTKAQQWLKAGK--DLQLL 170
Query: 206 DTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
DTPGIL P+ D V KLALTGAI D+ ++A Y
Sbjct: 171 DTPGILWPKFEDPLVGKKLALTGAIKDTLYAKDDVALY 208
>gi|420156939|ref|ZP_14663779.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
MSTE9]
gi|394756949|gb|EJF40008.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
MSTE9]
Length = 289
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 113/231 (48%), Gaps = 25/231 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM R I + LVDI E+ DAR+P SS D L + P R++++NK
Sbjct: 9 WYPGHMTRTKRQIEKSLKLVDIAAEMIDARVPVSSRNPVLDSLIQNKP-----RVILMNK 63
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT- 142
DLA Q + WI F+ Q + ++S + N+K F ++ V + R + + A
Sbjct: 64 SDLADSAQTERWIRFYQSQGISAVALDSRSGKNLKAFFPLVR-DVLSDRIAAWRAKGMVG 122
Query: 143 --VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
V VM++G+PNVGKS+ N L G+ A V +PG T++ +
Sbjct: 123 RPVRVMVVGVPNVGKSSFINKLSHGGK-----------ANVEDRPGVTRNNQWFTLGG-- 169
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFS 251
+LDTPG+L P+ D V +LA TGA+ D V + LA L +L S
Sbjct: 170 GFELLDTPGVLWPKFEDPLVGERLAFTGAVKDDVVDTEHLAARLLEVLCVS 220
>gi|299473288|emb|CBN77688.1| Mtg1, mitochondrial YlqF-like GTPase [Ectocarpus siliculosus]
Length = 445
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 121/227 (53%), Gaps = 9/227 (3%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM AT+ I +++ VD++ EVRDARIPF+S + L + S R++VLNK DL
Sbjct: 73 WFPGHMVKATKVIREKLKQVDMVFEVRDARIPFTSANEDL-DKIVGPSKARLIVLNKADL 131
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVM 146
++ + + F +Q + NV + L + A R R+ ++ S+ M
Sbjct: 132 SNQALEQRVLQRFKEQGKAAVYACGRTGTNVNKLLAW--ARERGARRGEF--STTGAIAM 187
Query: 147 LLGIPNVGKSALANSL----HQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
++G+PNVGKS+L N L ++ G +G + A V PG T+ + + +IAS+P +
Sbjct: 188 VVGMPNVGKSSLINLLRGKANRGGGGGGDGEGAKQVARVGAMPGVTRQVSAFRIASNPPL 247
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
Y++DTPG++ P + LALT A+ DS V L + L ++
Sbjct: 248 YLVDTPGVMVPRVESKTAGLFLALTRAVPDSAVPSDVLVGFMLRVVR 294
>gi|366165753|ref|ZP_09465508.1| GTP-binding protein YlqF [Acetivibrio cellulolyticus CD2]
Length = 321
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 2 ATSSSSLFKLAREIGTAVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS 61
A + L + A E T + K WY HMA + + D M LVD+++E+ DARIP SS
Sbjct: 11 ANNVRVLERQATEGITKLEVKMNIQWYPGHMAKTRKILNDNMKLVDVVIELLDARIPISS 70
Query: 62 ---EFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK 118
+FD + + P +I+VLNK DLA W +++ + + ++S N+
Sbjct: 71 KNPDFDDIFKNKP-----KIIVLNKSDLADEKVCNSWSKWYNSKGYANIFIDSIKGKNIN 125
Query: 119 EFLKFLQAHVRNLRKSDYDAS------SDTVTVMLLGIPNVGKSALANSLHQIGRITAAE 172
+ L+ ++NL K + S + M++GIPNVGKS+L N +
Sbjct: 126 Q----LKGQMQNLMKDKIERDKLKGRISRPIKTMIVGIPNVGKSSLINKIA--------- 172
Query: 173 KGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGD 232
GK A +PG T+ + + I +LDTPGIL P+ D+EV LA+TGAI D
Sbjct: 173 -GK-ASAVTGDRPGVTRGKQWINVNDQ--IQLLDTPGILWPKFEDIEVGLNLAITGAIKD 228
Query: 233 SFVGGKELAQYFLGIL------NFSDEYK 255
+ ELA L N + YK
Sbjct: 229 DILDTVELASTLFEKLVRLYPKNLMERYK 257
>gi|94544013|gb|ABF34061.1| GTP-binding protein [Streptococcus pyogenes MGAS10270]
Length = 282
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 115/223 (51%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENVKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A T+ KEW +++ Q + +NS + VK E K L A ++ LR D +T
Sbjct: 64 ADATRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEAAKELMADKIKRLR--DRGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D V KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|348027363|ref|YP_004767168.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera elsdenii
DSM 20460]
gi|341823417|emb|CCC74341.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera elsdenii
DSM 20460]
Length = 287
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 105/210 (50%), Gaps = 17/210 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA A R I + + ++D+++E+ DARIP SS +++ I+VLNK DL
Sbjct: 5 WYPGHMAKAKRLIQENLKIIDVVIELVDARIPMSSTNPMIKSL--IGDKPSIVVLNKADL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDASSDTVT 144
A P EW+ + QQ +NS VK+ + ++ A + R + V
Sbjct: 63 ADPAVLDEWVAHYKQQGRKVLALNSKGGKGVKQLISLVRSLAAPKLARWKARGLKNRAVR 122
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M+LGIPNVGKS L N L + A+K PGETK + I ++
Sbjct: 123 TMILGIPNVGKSTLINKLSRRSAAKTADK-----------PGETKGKQWVHIGDQLDL-- 169
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSF 234
LDTPG+L P++ + +LA TGAI D+
Sbjct: 170 LDTPGVLWPKLENQVSAYRLAATGAISDTV 199
>gi|385260394|ref|ZP_10038542.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
SK140]
gi|385191658|gb|EIF39071.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
SK140]
Length = 283
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 120/243 (49%), Gaps = 21/243 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L R+L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPML--TKIIGDKPRLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPALTKEWRQHFESQGIQTLAINSKEQITVKVVTDAAKKLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSIN 263
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F Y +
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKTHYPDKLQERFK 227
Query: 264 QIN 266
Q+N
Sbjct: 228 QMN 230
>gi|386086556|ref|YP_006002430.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
thermophilus ND03]
gi|387909787|ref|YP_006340093.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
thermophilus MN-ZLW-002]
gi|312278269|gb|ADQ62926.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
thermophilus ND03]
gi|387574722|gb|AFJ83428.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
thermophilus MN-ZLW-002]
Length = 284
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 113/223 (50%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L +IL+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKILILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASSDT 142
A + KEW T+F+ Q + +NS + VK + ++ LR+ +T
Sbjct: 64 ADDNRTKEWRTYFESQGIKTLAINSKEQSTVKLITDAAKSLMTEKIQRLRER--GIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D V KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|116627721|ref|YP_820340.1| ribosomal biogenesis GTPase [Streptococcus thermophilus LMD-9]
gi|116100998|gb|ABJ66144.1| Predicted GTPase [Streptococcus thermophilus LMD-9]
Length = 284
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 113/223 (50%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L +IL+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKILILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASSDT 142
A + KEW T+F+ Q + +NS + VK + ++ LR+ +T
Sbjct: 64 ADDNRTKEWRTYFESQGIKTLAINSKEQSTVKLVTDAAKSLMTEKIQRLRER--GIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D V KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|417837634|ref|ZP_12483872.1| 50S ribosomal subunit maturation GTPase RbgA [Lactobacillus
johnsonii pf01]
gi|338761177|gb|EGP12446.1| 50S ribosomal subunit maturation GTPase RbgA [Lactobacillus
johnsonii pf01]
Length = 279
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 124/249 (49%), Gaps = 29/249 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + D + L+DI++EV DAR+P SS QL P I+VLNK
Sbjct: 6 WYPGHMNKAKNQLEDNLDLIDILIEVLDARLPVSSRNPMIGQLTKKKP-----HIIVLNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD----YDAS 139
DLA P Q K+W ++ + +++ + N+ K ++ + K+D AS
Sbjct: 61 ADLADPIQTKKWTRYYQDEGNFVISMDAQHNTNMTSLFKIIKLAGK--EKTDKLIAKGAS 118
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ + V + GIPN GKS + N + +GR A V +PG T+ LK +
Sbjct: 119 NPMIRVAIAGIPNCGKSTIINRM--VGR---------NAAIVGDKPGVTRGQSWLK--TK 165
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKKW 257
N+ +LDTPGIL P+ D EV KLA GAI ++A + + L N+ D+ K+
Sbjct: 166 TNVQILDTPGILWPKFSDQEVGYKLAACGAIKADIFHPDDVALFVIEFLKQNYRDDLVKF 225
Query: 258 AKFSINQIN 266
A+ S +++
Sbjct: 226 ARISSEEMD 234
>gi|153813998|ref|ZP_01966666.1| hypothetical protein RUMTOR_00205 [Ruminococcus torques ATCC 27756]
gi|317502412|ref|ZP_07960577.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 8_1_57FAA]
gi|331088005|ref|ZP_08336928.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336439693|ref|ZP_08619300.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 1_1_57FAA]
gi|145848394|gb|EDK25312.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus torques
ATCC 27756]
gi|316896222|gb|EFV18328.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 8_1_57FAA]
gi|330409316|gb|EGG88765.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336015591|gb|EGN45405.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 1_1_57FAA]
Length = 280
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 114/228 (50%), Gaps = 23/228 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A R + + + L+D+I+E+ DAR+P SS + D+L + R+++LNK
Sbjct: 5 WYPGHMTKARRMMQENIKLIDLIIELVDARVPLSSRNPDIDELGKNKA-----RLILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DLA EWI +F + + VNS + + +Q + + D +
Sbjct: 60 SDLAEERINDEWIDYFKDRGYSAVKVNSKKGGGMNQIRSAIQEACKEKTERDRKRGILNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M++GIPNVGKS NSL G+ A K PG TK +++ + N
Sbjct: 120 PVRAMVVGIPNVGKSTFINSLA--GKACAKTGNK---------PGVTKGKQWIRL--NKN 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ +LDTPGIL P+ D EV KLA G+I D + +EL+ + LN
Sbjct: 167 VELLDTPGILWPKFEDQEVGKKLAFIGSIKDEILQTEELSTELIKFLN 214
>gi|334313746|ref|XP_001378257.2| PREDICTED: mitochondrial GTPase 1-like [Monodelphis domestica]
Length = 335
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 127/247 (51%), Gaps = 25/247 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA + + + LVD I+E++ ARIP S F + P +LVLNK
Sbjct: 30 WFPGHMAKGLKKMQSSLKLVDCIIEMQVARIPLSGRNPLFQETLGIKP-----HLLVLNK 84
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFL----KFLQAHVRNLRKSDYDA 138
MDLA + ++ + +++ + + KD N+K+ + K +++ R R + +
Sbjct: 85 MDLADLKEKQKIVGCLNKKGVKNVIFTNCIKDENIKQIVPMVTKLIESGYRYHRGENLE- 143
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIA 197
+M++G+PNVGKS+L NSL R +KGK + V PG TK + S +++
Sbjct: 144 ----YCIMVIGVPNVGKSSLINSL----RRQHLKKGK--ASPVGGHPGVTKAVMSRVQVC 193
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
P +++LDTPG+L P I DVE KLA G I D VG +A Y L LN +++
Sbjct: 194 ERPLMFLLDTPGVLTPRIQDVETGLKLATCGTILDHLVGEDIIADYLLFTLNKQQQFRYV 253
Query: 258 AKFSINQ 264
+ + +
Sbjct: 254 EHYDLGE 260
>gi|312143697|ref|YP_003995143.1| ribosome biogenesis GTP-binding protein YlqF [Halanaerobium
hydrogeniformans]
gi|311904348|gb|ADQ14789.1| ribosome biogenesis GTP-binding protein YlqF [Halanaerobium
hydrogeniformans]
Length = 285
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 113/219 (51%), Gaps = 17/219 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA A R + D + LVD+I+EV DAR P+S++ L++ +R+ VLNK DL
Sbjct: 4 WYPGHMAKAKRILKDDLKLVDLIIEVLDARAPYSTQNPDLQSL--VKDQKRVAVLNKKDL 61
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVM 146
A P ++W+ +F + + +K L L + N + S + + M
Sbjct: 62 ADPELNQKWLNYFKGEAVLLNSITGEGVGELKNLLNGLHYEITN-KLSKKGRKARRIRAM 120
Query: 147 LLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLD 206
++GIPNVGKSAL N L A K A ++ +PG T+ + ++ + +LD
Sbjct: 121 IIGIPNVGKSALINLL-------AGSKA----ANIADKPGVTRGRQWVNVSKK--VRLLD 167
Query: 207 TPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
TPGIL P D + KLALTGA+ + V ELA Y L
Sbjct: 168 TPGILWPSFSDEDTAYKLALTGAVSND-VFDFELAAYKL 205
>gi|374582895|ref|ZP_09655989.1| ribosome biogenesis GTP-binding protein YlqF [Desulfosporosinus
youngiae DSM 17734]
gi|374418977|gb|EHQ91412.1| ribosome biogenesis GTP-binding protein YlqF [Desulfosporosinus
youngiae DSM 17734]
Length = 276
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 120/226 (53%), Gaps = 18/226 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ R + +++ VD++LE+ DARIP SS L H + R+L+LNK DL
Sbjct: 5 WFPGHMSKTRRLLLEQLKWVDVVLELADARIPASSRNPML--HKLLGNKARLLLLNKADL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV--RNLRKSDYDASSDTVT 144
A +W+ + +++ P + V++ +K+ + L+ V + +++ +
Sbjct: 63 ADSNWTSKWLKYL-KESSPVYAVSATTGVGIKQIVPELERMVLAKQAKQAQKGIRPQMIR 121
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
VM++GIPN+GKS+L N L T + K V +PG T+ ++I H + +
Sbjct: 122 VMIVGIPNIGKSSLINQL------TGGAQAK-----VGNKPGVTRGNQWVRI--HERVEL 168
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNF 250
LDTPG+L P+ D++V KLA GAI D +EL+ + + LN
Sbjct: 169 LDTPGMLWPKFDDLDVGRKLAALGAIKDDVFDIEELSIWIIDWLNL 214
>gi|24379433|ref|NP_721388.1| GTPase YlqF [Streptococcus mutans UA159]
gi|397649667|ref|YP_006490194.1| GTPase YlqF [Streptococcus mutans GS-5]
gi|449865443|ref|ZP_21779001.1| ribosomal biogenesis GTPase [Streptococcus mutans U2B]
gi|449869774|ref|ZP_21780268.1| ribosomal biogenesis GTPase [Streptococcus mutans 8ID3]
gi|449889171|ref|ZP_21787514.1| ribosomal biogenesis GTPase [Streptococcus mutans SA41]
gi|449892459|ref|ZP_21788463.1| ribosomal biogenesis GTPase [Streptococcus mutans SF12]
gi|449914950|ref|ZP_21795950.1| ribosomal biogenesis GTPase [Streptococcus mutans 15JP3]
gi|449936859|ref|ZP_21804235.1| ribosomal biogenesis GTPase [Streptococcus mutans 2ST1]
gi|449941225|ref|ZP_21805455.1| ribosomal biogenesis GTPase [Streptococcus mutans 11A1]
gi|449985491|ref|ZP_21819700.1| ribosomal biogenesis GTPase [Streptococcus mutans NFSM2]
gi|449989503|ref|ZP_21821083.1| ribosomal biogenesis GTPase [Streptococcus mutans NVAB]
gi|450041972|ref|ZP_21837577.1| ribosomal biogenesis GTPase [Streptococcus mutans T4]
gi|450077403|ref|ZP_21850403.1| ribosomal biogenesis GTPase [Streptococcus mutans N3209]
gi|450080998|ref|ZP_21851443.1| ribosomal biogenesis GTPase [Streptococcus mutans N66]
gi|450115830|ref|ZP_21864142.1| ribosomal biogenesis GTPase [Streptococcus mutans ST1]
gi|450121367|ref|ZP_21866266.1| ribosomal biogenesis GTPase [Streptococcus mutans ST6]
gi|450154162|ref|ZP_21877579.1| ribosomal biogenesis GTPase [Streptococcus mutans 21]
gi|24377367|gb|AAN58694.1|AE014939_1 putative GTP-binding protein [Streptococcus mutans UA159]
gi|392603236|gb|AFM81400.1| GTPase YlqF [Streptococcus mutans GS-5]
gi|449152269|gb|EMB55980.1| ribosomal biogenesis GTPase [Streptococcus mutans 11A1]
gi|449157338|gb|EMB60782.1| ribosomal biogenesis GTPase [Streptococcus mutans 15JP3]
gi|449157671|gb|EMB61107.1| ribosomal biogenesis GTPase [Streptococcus mutans 8ID3]
gi|449165184|gb|EMB68207.1| ribosomal biogenesis GTPase [Streptococcus mutans 2ST1]
gi|449179091|gb|EMB81319.1| ribosomal biogenesis GTPase [Streptococcus mutans NFSM2]
gi|449182465|gb|EMB84489.1| ribosomal biogenesis GTPase [Streptococcus mutans NVAB]
gi|449197292|gb|EMB98480.1| ribosomal biogenesis GTPase [Streptococcus mutans T4]
gi|449211208|gb|EMC11622.1| ribosomal biogenesis GTPase [Streptococcus mutans N3209]
gi|449215759|gb|EMC15938.1| ribosomal biogenesis GTPase [Streptococcus mutans N66]
gi|449227644|gb|EMC27056.1| ribosomal biogenesis GTPase [Streptococcus mutans ST1]
gi|449229232|gb|EMC28556.1| ribosomal biogenesis GTPase [Streptococcus mutans ST6]
gi|449238008|gb|EMC36795.1| ribosomal biogenesis GTPase [Streptococcus mutans 21]
gi|449250396|gb|EMC48458.1| ribosomal biogenesis GTPase [Streptococcus mutans SA41]
gi|449256080|gb|EMC53914.1| ribosomal biogenesis GTPase [Streptococcus mutans SF12]
gi|449264294|gb|EMC61640.1| ribosomal biogenesis GTPase [Streptococcus mutans U2B]
Length = 283
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 116/221 (52%), Gaps = 17/221 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIIGDKPKLIILNKVDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A T EW FF++Q + VNS + VK+ + + + + ++ + + +
Sbjct: 64 ADSTCTAEWCNFFEKQGIKALAVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKENLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPNVGKS L N L GK + A V +PG TK LK S+ N+ +
Sbjct: 124 TMIVGIPNVGKSTLMNRLA----------GK-KIAIVGNKPGVTKGQQWLK--SNKNLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
LDTPGIL P+ + V KLA+TGAI D+ + E+ + L
Sbjct: 171 LDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIFGL 211
>gi|55820933|ref|YP_139375.1| ribosomal biogenesis GTPase [Streptococcus thermophilus LMG 18311]
gi|55822855|ref|YP_141296.1| ribosomal biogenesis GTPase [Streptococcus thermophilus CNRZ1066]
gi|386344588|ref|YP_006040752.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
thermophilus JIM 8232]
gi|445376173|ref|ZP_21426604.1| GTPase YlqF [Streptococcus thermophilus MTCC 5460]
gi|445390980|ref|ZP_21428327.1| GTPase YlqF [Streptococcus thermophilus MTCC 5461]
gi|55736918|gb|AAV60560.1| GTP-binding protein [Streptococcus thermophilus LMG 18311]
gi|55738840|gb|AAV62481.1| GTP-binding protein [Streptococcus thermophilus CNRZ1066]
gi|339278049|emb|CCC19797.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
thermophilus JIM 8232]
gi|444750019|gb|ELW74873.1| GTPase YlqF [Streptococcus thermophilus MTCC 5461]
gi|444750129|gb|ELW74968.1| GTPase YlqF [Streptococcus thermophilus MTCC 5460]
Length = 284
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 113/223 (50%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L +IL+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKILILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASSDT 142
A + KEW T+F+ Q + +NS + VK + ++ LR+ +T
Sbjct: 64 ADDNRTKEWRTYFESQGIKTLAINSKEQSTVKLVTDAAKSLMTEKIQRLRER--GIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D V KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|374603429|ref|ZP_09676409.1| GTPase [Paenibacillus dendritiformis C454]
gi|374391025|gb|EHQ62367.1| GTPase [Paenibacillus dendritiformis C454]
Length = 296
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 119/237 (50%), Gaps = 29/237 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A R I +++ L+D+ +E+ DAR+P SS + H P R+++LNK
Sbjct: 5 WFPGHMTRARRQIQEKLKLIDVAIELLDARLPMSSRNPMIGDILQHKP-----RLILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK----EFLKFLQAHVRNLRKSDYDAS 139
DLA P W+ F + + +++ NV E K L+ ++ R+
Sbjct: 60 SDLADPEMNARWLQAFRGEGHAALAIDASTGTNVAQIPGEARKLLEEKIQ--RQLAKGMK 117
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
V +++GIPNVGKS L N L GR AA +PG TK +K+ S
Sbjct: 118 PRPVRALIVGIPNVGKSTLINKLA--GRSVAA---------TGDRPGVTKGQQWIKVGSE 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKK 256
+ +LDTPGIL P+ D EV +LA TGAI D + +++A F I +D+Y++
Sbjct: 167 --MELLDTPGILWPKFEDQEVGYRLAATGAIKDEILNVEDIA--FYTIKQLADQYRE 219
>gi|21910353|ref|NP_664621.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS315]
gi|28895930|ref|NP_802280.1| ribosomal biogenesis GTPase [Streptococcus pyogenes SSI-1]
gi|21904550|gb|AAM79424.1| putative GTP-binding protein [Streptococcus pyogenes MGAS315]
gi|28811180|dbj|BAC64113.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
Length = 282
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 114/223 (51%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENVKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASSDT 142
A T+ KEW +++ Q + +NS + VK+ + + ++ LR D +T
Sbjct: 64 ADATRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEAAKELIADKIKRLR--DRGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D V KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|328957388|ref|YP_004374774.1| ribosomal biogenesis GTPase [Carnobacterium sp. 17-4]
gi|328673712|gb|AEB29758.1| ribosomal biogenesis GTPase [Carnobacterium sp. 17-4]
Length = 287
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 114/228 (50%), Gaps = 31/228 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ LVDI+ E+ DAR+P SS D++ P RI++LNK
Sbjct: 5 WFPGHMAKARRQVTEKIKLVDIVFELVDARLPLSSRNPILDEIIGEKP-----RIIILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASS--- 140
DLA P + K+W+ +F+ Q + + + +K+ L A + L + +D +
Sbjct: 60 SDLADPLETKKWVAYFNDQGIAAVPIVAQEGHGMKQ----LMAKAKELLQPKFDRRAAKG 115
Query: 141 ---DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ M +GIPNVGKS L N K A +PG TK +
Sbjct: 116 IKPRAIRAMSIGIPNVGKSTLINRFV-----------KKNIAQTGNKPGVTK--AQQWLK 162
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D E+ KLALTGAI D+ + E+A Y L
Sbjct: 163 LGKELELLDTPGILWPKFEDPEIGKKLALTGAIKDTILQLDEIAMYGL 210
>gi|342163784|ref|YP_004768423.1| GTPase YlqF [Streptococcus pseudopneumoniae IS7493]
gi|341933666|gb|AEL10563.1| GTPase YlqF [Streptococcus pseudopneumoniae IS7493]
Length = 283
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 117/231 (50%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + R+ +T+
Sbjct: 64 ADPVMTKEWRQYFESQGIQTLTINSKEQVTVKVVTDAAKKLMAD-KIARQKGRGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGITKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKEHY 218
>gi|22537173|ref|NP_688024.1| ribosomal biogenesis GTPase [Streptococcus agalactiae 2603V/R]
gi|22534037|gb|AAM99896.1|AE014238_9 GTP-binding protein [Streptococcus agalactiae 2603V/R]
Length = 283
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 119/244 (48%), Gaps = 23/244 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A P + KEW F++ Q + +NS + VK + K L + + NLR +T
Sbjct: 64 ADPIRTKEWRDFYESQGLKTLAINSKEQSTVKKVTDIAKILMSDKIANLRGR--GIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262
+LDTPGIL P+ D V KLALTGAI D + E+ G+ F Y K
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVT--IFGLNYFKTYYPDRLKERF 226
Query: 263 NQIN 266
IN
Sbjct: 227 KSIN 230
>gi|331701418|ref|YP_004398377.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
buchneri NRRL B-30929]
gi|329128761|gb|AEB73314.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
buchneri NRRL B-30929]
Length = 290
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 114/222 (51%), Gaps = 19/222 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMD 85
W+ HMA A R + + LVD++ EV DARIP +S+ ++R S+ + + ++ K D
Sbjct: 7 WFPGHMAKAIRQFEENLSLVDVVFEVIDARIPLTSQNPEIRR---ISADKPHLYIMTKRD 63
Query: 86 LASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTV 143
LA P W+ +F + N P+ +++ K + + + +R+ R+ D +
Sbjct: 64 LADPQLTNAWLQYFAEHNQPAIAIDAKTKFGINNVISVISPILRDKLQREQDKGMKKRPI 123
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
+ +G+PNVGKS + N L + R R A V +PG TK LK S +
Sbjct: 124 RAISVGVPNVGKSTVLNRL--VNR---------RAAQVGNRPGVTKGQQWLK--STDKLE 170
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ EV KLALTGAI +S ++A + L
Sbjct: 171 LLDTPGILWPKFSSQEVADKLALTGAIKESVYASDDIALFGL 212
>gi|15675137|ref|NP_269311.1| ribosomal biogenesis GTPase [Streptococcus pyogenes SF370]
gi|71910695|ref|YP_282245.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS5005]
gi|410680553|ref|YP_006932955.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pyogenes A20]
gi|13622297|gb|AAK34032.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|71853477|gb|AAZ51500.1| GTP-binding protein [Streptococcus pyogenes MGAS5005]
gi|395453930|dbj|BAM30269.1| ribosomal biogenesis GTPase [Streptococcus pyogenes M1 476]
gi|409693142|gb|AFV38002.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pyogenes A20]
Length = 282
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 119/232 (51%), Gaps = 24/232 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENVKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A T+ KEW +++ Q + +NS + VK E K L A ++ LR + +T
Sbjct: 64 ADATRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEAAKELMADKIQRLR--ERGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + LN+ EY
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFG---LNYFREY 217
>gi|312898596|ref|ZP_07757986.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera
micronuciformis F0359]
gi|310620515|gb|EFQ04085.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera
micronuciformis F0359]
Length = 318
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 130/249 (52%), Gaps = 29/249 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R I + ++D+ +E+ DARIP SS QL P I+V+NK
Sbjct: 34 WYPGHMAKARRLIEGNLKIIDVAIELVDARIPMSSTNPMIGQLLGQKP-----SIVVMNK 88
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDASSD 141
DLA K W ++ +Q +NS + +K+ ++ ++ A + ++ S
Sbjct: 89 ADLADTEILKLWTAYYKEQGRMVMALNSKDGKGIKQLVQAVRKLAEPKLVKWRAKGLKSR 148
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHAT-VSPQPGETKDIYSLKIASHP 200
+V ++LGIPNVGKS L N L R+AT + +PGETK + +A
Sbjct: 149 SVRTIILGIPNVGKSTLINRLAG------------RNATKTADKPGETKGKQWVHLAD-- 194
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKWA 258
N+ +LDTPG+L P++ + + +LA TGAI D+ +E+ + L+ +S+ KK
Sbjct: 195 NLDLLDTPGVLWPKLEEQKCARRLAATGAISDTVYDMEEVVADLITTLSVRYSEALKK-- 252
Query: 259 KFSINQINK 267
+F +++I++
Sbjct: 253 RFKLSEIDE 261
>gi|385799834|ref|YP_005836238.1| ribosome biogenesis GTP-binding protein YlqF [Halanaerobium
praevalens DSM 2228]
gi|309389198|gb|ADO77078.1| ribosome biogenesis GTP-binding protein YlqF [Halanaerobium
praevalens DSM 2228]
Length = 290
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 115/222 (51%), Gaps = 19/222 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA A R + D + +VDI++EV DARIP SS+ L+ S ++ VLNK DL
Sbjct: 4 WYPGHMAKAKRILKDDLKMVDIVIEVADARIPVSSQNPDLKKL--ISKQTKVTVLNKKDL 61
Query: 87 ASPTQFKEWITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSDTV 143
A P ++W+ +F ++N + +NS + V + L + + + + +
Sbjct: 62 ADPNYNQKWLQYFSEKNSEAAVLINSLTGEGVSDLKSVLNNTYDQIAAKLAKKGRNPRRL 121
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPNVGKSAL N L +IT T+ +PG T+ + + I
Sbjct: 122 RAMIIGIPNVGKSALINLLAG-SKIT----------TIGDKPGVTRGRQWVNVGQK--IR 168
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D + KLALTGAI + ELA Y L
Sbjct: 169 LLDTPGILWPKFSDEDKAYKLALTGAISNDIYDA-ELAAYKL 209
>gi|421893234|ref|ZP_16323784.1| 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Streptococcus pyogenes NS88.2]
gi|379981030|emb|CCG27506.1| 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Streptococcus pyogenes NS88.2]
Length = 282
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 119/232 (51%), Gaps = 24/232 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENVKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A T+ KEW +++ Q + +NS + VK E K L A ++ LR + +T
Sbjct: 64 ADATRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEAAKELMADKIQRLR--ERGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + LN+ EY
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFG---LNYFREY 217
>gi|67944515|gb|AAY83879.1| GTPase-like protein [Bos taurus]
gi|67944523|gb|AAY83883.1| GTPase-like protein [Bos taurus]
gi|296472672|tpg|DAA14787.1| TPA: mitochondrial GTPase 1 precursor [Bos taurus]
Length = 332
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 116/231 (50%), Gaps = 23/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA + + + LVD I+EV DARIP S F + P +LVLNK
Sbjct: 30 WFPGHMAKGLKKMQSSLRLVDCIIEVHDARIPLSGRNPLFQETLGLKPH-----LLVLNK 84
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYD---AS 139
MDLA + ++ I +++ + KD NVK+ + V L S Y
Sbjct: 85 MDLADLKEQQKIIQHLEREGIKHVVFTNCVKDENVKQVI----PTVTELVGSSYRYHRGE 140
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIAS 198
+M++G+PNVGKS+L NSL R KGK V +PG T+ + S +++
Sbjct: 141 HVEYCIMVIGVPNVGKSSLINSL----RRQHLRKGK--ATRVGGEPGITRAVMSRIQVCE 194
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
P +++LDTPG+L P I VE KLAL G + D VG + LA + L LN
Sbjct: 195 RPLMFLLDTPGVLAPRIPSVETGLKLALCGTVLDHLVGEETLADFLLYTLN 245
>gi|419841874|ref|ZP_14365236.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
necrophorum subsp. funduliforme ATCC 51357]
gi|386903911|gb|EIJ68712.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
necrophorum subsp. funduliforme ATCC 51357]
Length = 296
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 116/225 (51%), Gaps = 23/225 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPF--SSSRRILVLNKM 84
WY HM I + MPL+D++LE+ DARIP SS+ + P + +RI+VLNK
Sbjct: 8 WYPGHMKKTKDLIKENMPLIDVVLEIVDARIPLSSKNPDI----PIFAKNKKRIVVLNKS 63
Query: 85 DLASPTQFKEWITFFDQQNCPS--FGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DL ++ W +F QQ +++ NVK+ ++ + ++ Y
Sbjct: 64 DLVEKSELSRWKEYFLQQEKADAVVEISAETGYNVKQLYAYIDKVSKEKKEKLYAKGLKK 123
Query: 143 VT--VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
V +M+LGIPNVGKS L N + +G+ +A V +PG TK +K+
Sbjct: 124 VNIRIMVLGIPNVGKSRLINRI--VGKNSAG---------VGNKPGFTKGKQWVKLKD-- 170
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ + EV LA+TGAI D + +E+A FL
Sbjct: 171 GLELLDTPGILWPKFENREVGFHLAMTGAIKDEILPLEEVACTFL 215
>gi|365904024|ref|ZP_09441783.1| GTP-binding protein, GTPase [Lactobacillus versmoldensis KCTC 3814]
Length = 284
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 121/230 (52%), Gaps = 19/230 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A + DR+ +VDI+LE+ DAR+P+SS L + + I++LNK DL
Sbjct: 5 WYPGHMNKAKNQVQDRLKVVDIVLEIVDARLPYSSRNPVL--EQIINQKKHIIILNKADL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN-LRKSDYDASSD-TVT 144
A P +WI + Q+ + V++ + + + +++ + + + K + + + +
Sbjct: 63 ADPKLTSDWILSYQQEGTAAIEVDAKHDTKLTKLNNLIRSELSDKIAKYERNGVKNFQIR 122
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M +GIPNVGKS + N + +G+ A K PG TK+ LK + I +
Sbjct: 123 AMCIGIPNVGKSTILNKM--VGKKVAVTGNK---------PGVTKNQNWLK--TDYGIDL 169
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSD 252
LDTPGIL P+I D +V KLAL+GAI D ++A Y L L N+ D
Sbjct: 170 LDTPGILWPKISDPKVGMKLALSGAIKDKIYPPDDVAIYALDFLQANYLD 219
>gi|372271927|ref|ZP_09507975.1| GTPase YlqF [Marinobacterium stanieri S30]
Length = 307
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 120/230 (52%), Gaps = 35/230 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + IA M +D+++EV DAR+P SSE +QLR P + +LNK
Sbjct: 6 WFPGHMHKARKEIAQVMDEIDVVIEVLDARLPMSSENPLVEQLRGAKPV-----LKLLNK 60
Query: 84 MDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEF----LKFLQAHVRNLRKSDYDA 138
DLA P + +EW+ + + ++N + +++ K +K+ K + A VR R
Sbjct: 61 QDLADPVRTQEWLDYLNARENTLAVALDTQQKKQIKQIPELCKKMVPARVRQER------ 114
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
V M++GIPNVGKS L N+L +GR + A V +P TK + +
Sbjct: 115 ---PVRAMIMGIPNVGKSTLINAL--LGR---------KIAKVGNEPAVTK--AQKRYSV 158
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
H + + DTPGIL P+I D + +LA +GAI D+ + + +A Y G L
Sbjct: 159 HNGMALSDTPGILWPKIEDPDSGYRLAASGAIKDTAIEHEMVATYAAGFL 208
>gi|449504781|ref|XP_002186754.2| PREDICTED: mitochondrial GTPase 1 [Taeniopygia guttata]
Length = 299
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 121/239 (50%), Gaps = 31/239 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA R + + D ++EV DARIP S L+ +LVLNKMDL
Sbjct: 31 WFPRHMAKGLRQMRLALRRADCLVEVHDARIPLSGRNPALQE--ALGVRPHVLVLNKMDL 88
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVM 146
A D + P+ +++ + +L V + + + A S ++
Sbjct: 89 A------------DVRRQPAV---------LEQVVPWLPGLVADGPRY-HRAESSEHNIL 126
Query: 147 LLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYVL 205
++G+PNVGKS+L NSL ++ +KG R V +PG TK + S +++ P +Y++
Sbjct: 127 VIGVPNVGKSSLINSLRRL----HLKKG--RATAVGGEPGITKAVLSRIQVCEKPLMYLV 180
Query: 206 DTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
DTPG+LPP + DVE KLAL GAI D VG +A Y L LN +++ ++ + Q
Sbjct: 181 DTPGVLPPRLGDVETGMKLALCGAIHDHLVGEDVMADYLLYTLNKQQQFRYVQRYGLGQ 239
>gi|449950694|ref|ZP_21808347.1| ribosomal biogenesis GTPase [Streptococcus mutans 11SSST2]
gi|449167009|gb|EMB69917.1| ribosomal biogenesis GTPase [Streptococcus mutans 11SSST2]
Length = 283
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 117/221 (52%), Gaps = 17/221 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIIGDKPKLIILNKVDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A T EW FF++Q + V+S + VK+ + + + + ++ + +T+
Sbjct: 64 ADSTCTAEWCNFFEKQGIKALAVSSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPNVGKS L N L GK + A V +PG TK LK S+ N+ +
Sbjct: 124 TMIVGIPNVGKSTLMNRLA----------GK-KIAIVGNKPGVTKGQQWLK--SNKNLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
LDTPGIL P+ + V KLA+TGAI D+ + E+ + L
Sbjct: 171 LDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIFGL 211
>gi|427718535|ref|YP_007066529.1| ribosome biogenesis GTP-binding protein YlqF [Calothrix sp. PCC
7507]
gi|427350971|gb|AFY33695.1| ribosome biogenesis GTP-binding protein YlqF [Calothrix sp. PCC
7507]
Length = 292
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 118/230 (51%), Gaps = 27/230 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A + + +++ VD++LEVRDARIP ++ HHP S R+LVL
Sbjct: 14 WYPGHIAKAEKNLKEQLKRVDVVLEVRDARIPLAT-------HHPQIEEWVGSKARVLVL 66
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAH--VRNLRKSDYDAS 139
N++D+ +P WI +F Q ++ N+ + V E K QA N R+ D
Sbjct: 67 NRVDMITPQMRSLWINWFKFQGETAYFTNAQHGQGVTEVCKAAQAAGLELNQRRRDRGML 126
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
V +++G PNVGKSAL N L +G+ R + +PG T+ + ++I+
Sbjct: 127 PRPVRAVVIGFPNVGKSALINRL--LGK---------RVVESAARPGVTRQLRWVRISEQ 175
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ +LD PG++P ++ D KLA+ IG++ + +A + ILN
Sbjct: 176 --LELLDAPGVIPLKLEDQGAALKLAICDDIGEAAYDNQLVAAELVDILN 223
>gi|433449601|ref|ZP_20412465.1| GTP-binding protein YlqF [Weissella ceti NC36]
gi|429539115|gb|ELA07153.1| GTP-binding protein YlqF [Weissella ceti NC36]
Length = 292
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 117/237 (49%), Gaps = 34/237 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HMA A R + + M VDI+ E+ DARIP SS E D++ P R++++ K
Sbjct: 7 WYPGHMAKAFRLMRENMKHVDIVFELVDARIPVSSRNPELDKVLGDKP-----RLMIMTK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSD-- 141
DLA P + EW+ +F QQ +++ N + K RN+ + A ++
Sbjct: 62 TDLADPERTNEWLRYFRQQGMNVVALDTRNHKTPQMITK----AARNVLADKWAALAEKG 117
Query: 142 ----TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
++ ++ GIPNVGKS L N L +T A +PG TK + LK
Sbjct: 118 VKDKSIRALVAGIPNVGKSTLLNHL-----VTK------NVAITGDRPGVTKKLQWLKTP 166
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+ N+ +LDTPG+L P+ D V LA+TGAI D V ++A L L F EY
Sbjct: 167 T--NLELLDTPGVLWPKFEDKRVGQHLAMTGAIKDQLVNLDDIA---LVTLKFMREY 218
>gi|299822634|ref|ZP_07054520.1| ribosome biogenesis GTP-binding protein YlqF [Listeria grayi DSM
20601]
gi|299816163|gb|EFI83401.1| ribosome biogenesis GTP-binding protein YlqF [Listeria grayi DSM
20601]
Length = 289
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 111/226 (49%), Gaps = 31/226 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ LVD+I E+ DAR+P SS L +R+++LNK DL
Sbjct: 5 WFPGHMAKARRQVTEKLKLVDVIFELVDARLPLSSANPML--AEIIHQKKRVIILNKADL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNS------HNKDNVKEFL---KFLQAHVRNLRKSDYD 137
A + EWI +F +Q + V++ H E L KF + ++
Sbjct: 63 ADEVRTAEWIDYFAEQGLLAVAVDAQAGKGMHKISRAAELLMKEKFDNWKTKGMKPR--- 119
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ M+LGIPNVGKS L N L K A +PG TK +K+
Sbjct: 120 ----AIRAMILGIPNVGKSTLINRL-----------AKKNIARTGNKPGVTKAQQWIKV- 163
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
++ +LDTPGIL P+ D V KLALTGAI D + +++A +
Sbjct: 164 -EKSLELLDTPGILWPKFEDQSVGFKLALTGAIKDDLLQMEDIASF 208
>gi|407474073|ref|YP_006788473.1| ribosome biogenesis GTPase A [Clostridium acidurici 9a]
gi|407050581|gb|AFS78626.1| ribosome biogenesis GTPase A [Clostridium acidurici 9a]
Length = 281
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 115/220 (52%), Gaps = 23/220 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM + + LVDI++E+ DARIP SS+ D++ ++ P R++++NK
Sbjct: 5 WYPGHMKKTKELLQANLKLVDIVIELLDARIPISSKNPMIDEIISNKP-----RLVIMNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSD 141
DL+S K W +F+ +N P + + N + + + +Q +++ ++ + S
Sbjct: 60 SDLSSEKGNKLWKEYFESKNIPVVFITATNNNGIDKVTNEVQKVLKDKMQKRKEKGIKST 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+V M++GIPNVGKS L NSL A KG A +PG T +K+ +
Sbjct: 120 SVRAMIVGIPNVGKSTLINSL-------AGRKG----AKTGNRPGITTSKQWIKLKG--D 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELA 241
I +LDTPGIL P+ D V LA TGAI D + + LA
Sbjct: 167 IELLDTPGILWPKFEDKRVALNLAFTGAIKDEILDTETLA 206
>gi|383480029|ref|YP_005388923.1| 50S ribosomal biogenesis GTPase protein RbgA [Streptococcus
pyogenes MGAS15252]
gi|383493945|ref|YP_005411621.1| 50S ribosomal biogenesis GTPase protein RbgA [Streptococcus
pyogenes MGAS1882]
gi|378928019|gb|AFC66225.1| 50S ribosomal biogenesis GTPase protein RbgA [Streptococcus
pyogenes MGAS15252]
gi|378929673|gb|AFC68090.1| 50S ribosomal biogenesis GTPase protein RbgA [Streptococcus
pyogenes MGAS1882]
Length = 282
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 118/232 (50%), Gaps = 24/232 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENVKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASSDT 142
A T+ KEW +++ Q + +NS + VK+ + + ++ LR + +T
Sbjct: 64 ADATRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEASKELMADKIQRLR--ERGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + LN+ EY
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFG---LNYFREY 217
>gi|384045195|ref|YP_005493212.1| GTPase family protein [Bacillus megaterium WSH-002]
gi|345442886|gb|AEN87903.1| GTPase family protein [Bacillus megaterium WSH-002]
Length = 288
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 122/230 (53%), Gaps = 26/230 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+DI+ E+ DARIP SS D++ + P RI++LNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDIVYELVDARIPQSSRNPMIDEIIVNKP-----RIVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDAS 139
+D A P ++W+ ++ +Q + +++ +K+ + + LQ +R
Sbjct: 60 VDKADPRVTQQWLDYYKEQGIYALAIDAQAGKGMKQIVSSSKELLQEKFDRMRAKGVKKP 119
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS L N L A++K A +PG T+ +K+ +
Sbjct: 120 R-AIRAMIVGIPNVGKSTLINRL-------ASKK----IAKTGDRPGVTQAQQWIKVGNE 167
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ +LDTPGIL P+ D V KLA TGAI D+ + +++A Y L L+
Sbjct: 168 --LELLDTPGILWPKFEDETVGYKLATTGAIKDTILNMQDVAVYALRFLS 215
>gi|227889893|ref|ZP_04007698.1| GTP-binding protein [Lactobacillus johnsonii ATCC 33200]
gi|268319576|ref|YP_003293232.1| hypothetical protein FI9785_1101 [Lactobacillus johnsonii FI9785]
gi|227849337|gb|EEJ59423.1| GTP-binding protein [Lactobacillus johnsonii ATCC 33200]
gi|262397951|emb|CAX66965.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785]
Length = 279
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 124/249 (49%), Gaps = 29/249 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + D + L+D+++EV DAR+P SS QL P I+VLNK
Sbjct: 6 WYPGHMNKAKNQLEDNLDLIDVLIEVLDARLPVSSRNPMIGQLTKKKP-----HIIVLNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD----YDAS 139
DLA P Q K+W ++ + +++ + N+ K ++ + K+D AS
Sbjct: 61 ADLADPIQTKKWTRYYQDEGNFVISMDAQHTTNMTSLFKIIKLAGK--EKTDKLIAKGAS 118
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ + V + GIPN GKS + N + +GR A V +PG T+ LK +
Sbjct: 119 NPMIRVAIAGIPNCGKSTIINRM--VGR---------NAAIVGDKPGVTRGQSWLK--TK 165
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKKW 257
N+ +LDTPGIL P+ D EV KLA GAI ++A + + L N+ D+ K+
Sbjct: 166 TNVQILDTPGILWPKFSDQEVGYKLAACGAIKADIFHPDDVALFVIEFLKQNYRDDLVKF 225
Query: 258 AKFSINQIN 266
A+ S +++
Sbjct: 226 ARISSEEMD 234
>gi|450011007|ref|ZP_21828933.1| ribosomal biogenesis GTPase [Streptococcus mutans A19]
gi|450023399|ref|ZP_21830596.1| ribosomal biogenesis GTPase [Streptococcus mutans U138]
gi|449189790|gb|EMB91418.1| ribosomal biogenesis GTPase [Streptococcus mutans A19]
gi|449193495|gb|EMB94877.1| ribosomal biogenesis GTPase [Streptococcus mutans U138]
Length = 283
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 116/221 (52%), Gaps = 17/221 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--IKIIGDKPKLIILNKVDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A T EW FF++Q + VNS + VK+ + + + + ++ + + +
Sbjct: 64 ADSTCTAEWCNFFEKQGIKALAVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKENLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPNVGKS L N L GK + A V +PG TK LK S+ N+ +
Sbjct: 124 TMIVGIPNVGKSTLMNRLA----------GK-KIAIVGNKPGVTKGQQWLK--SNKNLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
LDTPGIL P+ + V KLA+TGAI D+ + E+ + L
Sbjct: 171 LDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIFGL 211
>gi|393762120|ref|ZP_10350748.1| GTPase YlqF [Alishewanella agri BL06]
gi|392606901|gb|EIW89784.1| GTPase YlqF [Alishewanella agri BL06]
Length = 311
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 114/223 (51%), Gaps = 31/223 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + IA+ MP VDII+E+ DARIPFSSE QLR P I VLNK
Sbjct: 5 WFPGHMHKARKEIAEVMPQVDIIIEMLDARIPFSSENPLVPQLRKDTPC-----IKVLNK 59
Query: 84 MDLASPTQFKEWITFF-DQQNCPSFGVNSHNKDNVKEFLKFLQAHV--RNLRKSDYDASS 140
DLA P W+ +F +Q+N + ++ + +K L+ + + RNL A
Sbjct: 60 ADLADPALTARWVDYFAEQKNVRAIPISQQQPEQIKALLELCNSMLPERNLELRAARA-- 117
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
M++GIPNVGKS L N+L GRI A + G TK +K+ +
Sbjct: 118 -----MIMGIPNVGKSTLINTLA--GRII---------AKTGNEAGVTKAQQRIKLEN-- 159
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
N+ + DTPG L P++ +LA+TGAI D+ ++A +
Sbjct: 160 NVILTDTPGFLWPKLSPTTCGYRLAVTGAIKDTVFDYADIALF 202
>gi|307544604|ref|YP_003897083.1| ribosomal biogenesis GTPase [Halomonas elongata DSM 2581]
gi|307216628|emb|CBV41898.1| ribosomal biogenesis GTPase [Halomonas elongata DSM 2581]
Length = 316
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 122/250 (48%), Gaps = 36/250 (14%)
Query: 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLN 82
GWY HM A R I + +P +D+++EV DAR+P+SS L H P + VL+
Sbjct: 3 GWYPGHMNKARRQILEALPEIDVVIEVLDARLPYSSANPMLASLTRHKPV-----LKVLS 57
Query: 83 KMDLASPTQFKEWITFFDQQ-NCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSD 141
+ DLA P + +EW FD Q N + V + +K K +R +D D
Sbjct: 58 RADLADPERTREWTNHFDAQPNTRALAVTTTQARELKRIPKLCHELAGQVR-ADRD---- 112
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V VM++GIPNVGKS L N L GR T A+ G +P TK ++IA
Sbjct: 113 -VRVMVMGIPNVGKSTLINGL--AGR-TIAKTGN--------EPAVTKRQQKVRIAGQ-- 158
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDS--------FVGGKELAQYFLGILNFSDE 253
+ ++DTPG+L P+I D +LA +GAI D+ V ELA+ + L+ +
Sbjct: 159 VALIDTPGVLWPKIEDQASAYRLAASGAIRDTAIDYVDVAIVTAAELAKRYPDALSARYK 218
Query: 254 YKKWAKFSIN 263
K+ + N
Sbjct: 219 LKELPPYRPN 228
>gi|395501203|ref|XP_003754987.1| PREDICTED: mitochondrial GTPase 1 [Sarcophilus harrisii]
Length = 336
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 124/245 (50%), Gaps = 21/245 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA + + + LVD I+EV DARIP S F + P +LVLNK
Sbjct: 30 WFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGIKP-----HLLVLNK 84
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD---ASS 140
MDLA + ++ + +++ + + KD E +K + V L +S Y +
Sbjct: 85 MDLADLKEKQKILGRLNKEGVKNVIFTNCLKD---ENIKQIVPTVTELIESGYRYHRGEN 141
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASH 199
+M++G+PNVGKS+L NSL R +KGK + V PG T+ + S +++
Sbjct: 142 LEYCIMVIGVPNVGKSSLINSL----RRQHLKKGK--ASRVGGDPGITRAVMSKIQVCER 195
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAK 259
P +++LDTPG+L P I DVE KLA G I D VG +A Y L LN +++
Sbjct: 196 PLMFLLDTPGVLAPRIPDVETGLKLATCGTILDHLVGEDIIADYLLFSLNKQQQFRYVEH 255
Query: 260 FSINQ 264
+ + +
Sbjct: 256 YDLGE 260
>gi|307212582|gb|EFN88297.1| Mitochondrial GTPase 1 [Harpegnathos saltator]
Length = 314
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 126/252 (50%), Gaps = 10/252 (3%)
Query: 18 AVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRR 77
+ +K W+ HM R + R+ +D ILEV DAR+P S + + S
Sbjct: 12 VIDPQKAIRWFPGHMTKGLRQMQQRLRSIDCILEVHDARVPISGHYADF-SRTLTSLKPH 70
Query: 78 ILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD-Y 136
I +LNK DLA + + ++ +++ + + + KE K + + + S+ Y
Sbjct: 71 IFILNKKDLADTSYSESIVSTLNRKGLSNILFTNLKNQHCKETKKIVPLAKKLILNSNRY 130
Query: 137 DASSD-TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-L 194
+ S + + T+M++G+PNVGKS+L N L R GK +V + G T+ + + +
Sbjct: 131 NRSGELSYTMMVIGVPNVGKSSLINRL----RSNNLSLGK--ATSVGAEAGITRSVLTHI 184
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
KI+ P +Y++DTPGIL P I D+ KLAL G + D VG LA Y L LN Y
Sbjct: 185 KISEEPTVYLIDTPGILIPTIKDIHSGLKLALVGCLQDHVVGSYTLADYLLYWLNKESRY 244
Query: 255 KKWAKFSINQIN 266
+ + +++ N
Sbjct: 245 EYTQELGLSEPN 256
>gi|307706601|ref|ZP_07643408.1| conserved hypothetical protein [Streptococcus mitis SK321]
gi|307618056|gb|EFN97216.1| conserved hypothetical protein [Streptococcus mitis SK321]
Length = 283
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ + + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPAITKEWRQYFESKGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQRERGIKIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKEHY 218
>gi|348587758|ref|XP_003479634.1| PREDICTED: mitochondrial GTPase 1-like [Cavia porcellus]
Length = 333
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 124/242 (51%), Gaps = 17/242 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA + + + LVD I+EV D RI F F + P +LVLNK
Sbjct: 29 WFPGHMAKGLKKMKSSLKLVDCIIEVHDCRISFHGRNPLFQETLGVRP-----HLLVLNK 83
Query: 84 MDLASPTQFKEWITFFDQQNCP-SFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
MDLA T+ ++ I + + + N +N+K+ + + V + + + A +
Sbjct: 84 MDLADLTEQQKIIQHLEGEGLKNTIFTNCVKDENIKQIIPKITEIVGSSYRY-HRAENVE 142
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPN 201
+M++GIPNVGKS+L NSL R + GK A V +PG T+ + S ++++ P
Sbjct: 143 YCIMVIGIPNVGKSSLINSL----RRQHLKIGK--AARVGGEPGITRAVTSRIQVSERPL 196
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
+++LDTPG+L P I VE KLAL G + D VG + +A Y L LN +K +
Sbjct: 197 MFLLDTPGVLAPRIGSVETGLKLALCGTVLDHLVGEETMADYLLYTLNQHQMFKYVQHYG 256
Query: 262 IN 263
++
Sbjct: 257 LH 258
>gi|238916978|ref|YP_002930495.1| hypothetical protein EUBELI_01047 [Eubacterium eligens ATCC 27750]
gi|238872338|gb|ACR72048.1| Hypothetical protein EUBELI_01047 [Eubacterium eligens ATCC 27750]
Length = 303
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 127/250 (50%), Gaps = 23/250 (9%)
Query: 20 SQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSR 76
+K+ WY HM A R + + + LVD+++E+ DARIP SS + D+L +
Sbjct: 7 EKKRAINWYPGHMTKARRMMEEDIKLVDLVIEIVDARIPLSSRNPDIDKLAKNKA----- 61
Query: 77 RILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSH-NKDN-VKEFLKFLQAHVRNLRKS 134
RI++LNK DLA T EWIT+F + +NS N N L + + R
Sbjct: 62 RIVLLNKSDLADDTVTDEWITYFKDKGFYCLKLNSRLNVSNRAVNNLITVACSAKIERDR 121
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ ++ M++GIPNVGKS NS GR + A +PG TK +
Sbjct: 122 ARGIKNRSIKAMIVGIPNVGKSTFINSFT--GR---------KSAKTGNKPGVTKGKQWI 170
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+I + ++ +LDTPGIL P+I D V +LA+ G+I D + +ELA + L + +
Sbjct: 171 RI--NGSVELLDTPGILWPKIEDRNVGERLAMIGSINDQILNIEELALETIKFLKKNYQP 228
Query: 255 KKWAKFSINQ 264
+ ++++ I +
Sbjct: 229 QLYSRYDITE 238
>gi|238019254|ref|ZP_04599680.1| hypothetical protein VEIDISOL_01118 [Veillonella dispar ATCC 17748]
gi|237863953|gb|EEP65243.1| hypothetical protein VEIDISOL_01118 [Veillonella dispar ATCC 17748]
Length = 306
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 109/217 (50%), Gaps = 31/217 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA ATR I + + VD+++E+ DARIP SS +L P I++LNK
Sbjct: 14 WFPGHMAKATRMITEYIKKVDVVIELLDARIPRSSANPVITELVGQKPH-----IVLLNK 68
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
+DLA P KEW FF +Q ++S + K+ + + V L K D
Sbjct: 69 VDLADPKATKEWTEFFTKQGITVLAIDSKSGKGNKKLI----STVERLSKPIIDRWVAKG 124
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
S +V +++LGIPNVGKS L NSL A K G T+ +KI
Sbjct: 125 IRSRSVRIIILGIPNVGKSTLINSLAGSAATRTANKA-----------GHTRGQQWVKIG 173
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSF 234
N+ +LDTPG+L P++ D ++LA+TGA+ D
Sbjct: 174 K--NLELLDTPGVLWPKLEDQRAAARLAMTGAVSDDV 208
>gi|449898038|ref|ZP_21790366.1| ribosomal biogenesis GTPase [Streptococcus mutans R221]
gi|449260334|gb|EMC57836.1| ribosomal biogenesis GTPase [Streptococcus mutans R221]
Length = 283
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 115/221 (52%), Gaps = 17/221 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 6 WFPGHMSKARRQVQENFKFVDFVTILVDARLPLSSQNPML--TKIIGDKPKLIILNKVDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A T EW FF++Q + VNS + VK+ + + + + ++ + + +
Sbjct: 64 ADSTCTAEWCNFFEKQGIKALAVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKENLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPNVGKS L N L GK + A V +PG TK LK S+ N+ +
Sbjct: 124 TMIVGIPNVGKSTLMNRLA----------GK-KIAIVGNKPGVTKGQQWLK--SNKNLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
LDTPGIL P+ + V KLA+TGAI D+ + E+ + L
Sbjct: 171 LDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIFGL 211
>gi|335029924|ref|ZP_08523425.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis SK1076]
gi|334267789|gb|EGL86242.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis SK1076]
Length = 283
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 121/243 (49%), Gaps = 21/243 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L +L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPSLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A PT KEW F+ Q + +NS + VK + K L A + R+ + +T+
Sbjct: 64 ADPTLTKEWRQHFEAQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSIN 263
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F Y + +
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKTHYPEKLQERFK 227
Query: 264 QIN 266
Q+N
Sbjct: 228 QMN 230
>gi|426253267|ref|XP_004020320.1| PREDICTED: mitochondrial GTPase 1 [Ovis aries]
Length = 334
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 117/228 (51%), Gaps = 17/228 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA + + + LVD I+EV DARIP S F + P +LVLNK
Sbjct: 30 WFPGHMAKGLKKMQGSLRLVDCIIEVHDARIPLSGRNPLFQETLGLKPH-----LLVLNK 84
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYDASSDT 142
MDLA + ++ + +++ + KD NVK+ + + V + + ++
Sbjct: 85 MDLADLKEQQKILQHLEREGLKHVVFTNCVKDENVKQVIPTVMELVGSSYRYHRGEHAEH 144
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPN 201
VM+ G+PNVGKS+L NSL R KGK V +PG T+ + S +++ P
Sbjct: 145 -CVMVTGVPNVGKSSLINSL----RRQHLRKGK--ATRVGGEPGITRAVMSRIQVCERPL 197
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+++LDTPG+L P I VE KLAL G + D VG + LA Y L LN
Sbjct: 198 MFLLDTPGVLAPRIPSVETGLKLALCGTVLDHLVGEETLADYLLYTLN 245
>gi|392331467|ref|ZP_10276082.1| ribosomal biogenesis GTPase [Streptococcus canis FSL Z3-227]
gi|391419146|gb|EIQ81958.1| ribosomal biogenesis GTPase [Streptococcus canis FSL Z3-227]
Length = 282
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 118/232 (50%), Gaps = 24/232 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A + KEW +++ Q + +NS + VK E K L A ++ LR D +T
Sbjct: 64 ADAARTKEWKAYYESQGIKTLAINSKEQPTVKKVTEAAKELMADKIQRLR--DRGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + LN+ EY
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQVLPMDEVTIFG---LNYFKEY 217
>gi|225028007|ref|ZP_03717199.1| hypothetical protein EUBHAL_02276 [Eubacterium hallii DSM 3353]
gi|224954721|gb|EEG35930.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium hallii
DSM 3353]
Length = 282
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 116/231 (50%), Gaps = 25/231 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQL-RNHHPFSSSRRILVLN 82
WY HM A R + + + L+DI++E+ DAR+PFSS + D+L +N + R++VLN
Sbjct: 5 WYPGHMTKARRMMQENIKLIDIVVELVDARVPFSSKNPDIDELAKNKY------RLIVLN 58
Query: 83 KMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--S 140
K D+A W +F+ + VNS +KE ++ + + D +
Sbjct: 59 KADMADAKTTAAWQNYFEAKGFFVAKVNSQKGAGMKEVKSLIEKACQEKKARDKKRGILN 118
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ M++GIPNVGKS NS G+ A K PG TK +KI +
Sbjct: 119 RPLRAMVVGIPNVGKSTFINSFA--GKACAKTGNK---------PGVTKGKQWIKI--NK 165
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFS 251
N+ +LDTPGIL P+ D V +LAL G+I + + E+A F+G L S
Sbjct: 166 NVELLDTPGILWPKFEDQAVGLRLALIGSIKEEILNTTEMAMEFIGFLKKS 216
>gi|307705206|ref|ZP_07642076.1| conserved hypothetical protein [Streptococcus mitis SK597]
gi|307621228|gb|EFO00295.1| conserved hypothetical protein [Streptococcus mitis SK597]
Length = 283
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 117/231 (50%), Gaps = 21/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW +F+ Q + +NS + VK + K L A + + + +T+
Sbjct: 64 ADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIAHQKERGIKIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK LK ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F + Y
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKEHY 218
>gi|419707040|ref|ZP_14234546.1| GTP-binding protein [Streptococcus salivarius PS4]
gi|383283280|gb|EIC81238.1| GTP-binding protein [Streptococcus salivarius PS4]
Length = 284
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 114/223 (51%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKSDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASSDT 142
A + KEW T+F++Q + +NS + VK + ++ LR + +T
Sbjct: 64 ADNNRTKEWRTYFEKQGIKTLAINSKEQSTVKLVTDAAKSLMSEKIQRLR--ERGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D V KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|164688557|ref|ZP_02212585.1| hypothetical protein CLOBAR_02202 [Clostridium bartlettii DSM
16795]
gi|164602970|gb|EDQ96435.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
bartlettii DSM 16795]
Length = 299
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 140/282 (49%), Gaps = 37/282 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM + + + LVD+++E+ DARIP SS E D+L ++ P R++VLNK
Sbjct: 18 WYPGHMKKTKEMVQNNLKLVDVVIELLDARIPLSSKNPEIDKLAHNKP-----RVVVLNK 72
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSD-- 141
DL+ + +WI+++ + + V++ V + ++ +N+ K DA +
Sbjct: 73 SDLSDRAKLNKWISYYQSKGIKAIPVDTLKGSGVNKIVE----ECKNVTKEKMDALKEKG 128
Query: 142 ----TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ VM++G+PNVGKS+L N L GR + +PG TK +++
Sbjct: 129 RKERAIRVMIVGVPNVGKSSLINKL--TGR---------KSTQTGDRPGVTKGKQWVRLK 177
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
N+ +LDTPGIL P+ D ++ LA T AI D + L F+ ++ + K
Sbjct: 178 G--NLELLDTPGILWPKFEDQKIALNLAFTRAIKDEILDIDTLGLKFIEKMSDIEPEKLK 235
Query: 258 AKFSINQI-NKPLTLHHKADQSSGSESGMIWKRQNPTDHTQV 298
A++ ++ + +PL + G + G I R N D+T++
Sbjct: 236 ARYKLDSLGEEPLETM----EMIGRKRGFILGR-NELDYTRI 272
>gi|325290407|ref|YP_004266588.1| Ras superfamily GTP-binding protein YlqF [Syntrophobotulus
glycolicus DSM 8271]
gi|324965808|gb|ADY56587.1| Ras superfamily GTP-binding protein YlqF [Syntrophobotulus
glycolicus DSM 8271]
Length = 275
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 120/243 (49%), Gaps = 19/243 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM R + +++ VD+I+E DAR+P SS LR + ++LVLNK DL
Sbjct: 5 WFPGHMTKTKRQLLEQLKWVDVIIETGDARLPLSSRNPLLREL--LGAKPKLLVLNKADL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV-RNLRKSDYDASSDTVTV 145
A Q +W+ +Q+ P V++ +K+ + L+ + +K + V
Sbjct: 63 ADEDQTGKWLKKLEQEG-PVLAVSASTGAGMKKIIPMLEELMAEKWQKLAEKGIKKPIRV 121
Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVL 205
M++GIPN GKS + N+L GR A +PG T+ L+I H I +L
Sbjct: 122 MVVGIPNTGKSTIINTLT--GRA---------QARTGNKPGVTRGSQWLRI--HGRIELL 168
Query: 206 DTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKKWAKFSIN 263
DTPG+L P+ D + KLA +GA+ D +ELAQ+ + L N+ K+ K
Sbjct: 169 DTPGMLWPKFDDQIIGRKLAASGAVRDEVFDLEELAQWLIAWLQTNYQGALNKYYKTEQE 228
Query: 264 QIN 266
+IN
Sbjct: 229 EIN 231
>gi|294793774|ref|ZP_06758911.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp.
3_1_44]
gi|294455344|gb|EFG23716.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp.
3_1_44]
Length = 301
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 113/232 (48%), Gaps = 35/232 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA ATR I + + VD+++E+ DARIP SS +L P I++LNK
Sbjct: 9 WFPGHMAKATRMITEYIKKVDVVIELLDARIPRSSANPVILELVGQKPH-----IVLLNK 63
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
+DLA P KEW FF +Q ++S + K+ L + V L K D
Sbjct: 64 IDLADPKATKEWTEFFTKQGITVLAIDSKSGKGNKKLL----STVERLSKPIIDRWVAKG 119
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
S +V ++LGIPNVGKS L NSL A K G T+ +KI
Sbjct: 120 IRSRSVRTIILGIPNVGKSTLINSLAGSAATRTANKA-----------GHTRGQQWVKIG 168
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGG----KELAQYFL 245
N+ +LDTPG+L P++ D ++LA+TGAI D K+L Y L
Sbjct: 169 K--NLELLDTPGVLWPKLEDQRAAARLAMTGAISDDVYDLEHVIKQLLNYLL 218
>gi|254479482|ref|ZP_05092807.1| putative GTPase [Carboxydibrachium pacificum DSM 12653]
gi|214034586|gb|EEB75335.1| putative GTPase [Carboxydibrachium pacificum DSM 12653]
Length = 277
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 118/226 (52%), Gaps = 23/226 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HMA A + I + LVD++ E+ DARIP SS +FD++ ++I++LNK
Sbjct: 4 WYPGHMAKAKKEIISNLKLVDVVYEIVDARIPRSSRNPDFDEIT-----KGKKKIMLLNK 58
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS-SDT 142
DLA WI F ++ + VN+ KE + + +++ ++ +
Sbjct: 59 EDLADERITDLWIKHFKERGIEAVKVNAITGKGFKELEEKTKEVCKDILEAKVKKGLTPR 118
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M+LGIPNVGKS N+L IGR + A +PG TK ++ ++ P +
Sbjct: 119 LRGMILGIPNVGKSTFINTL--IGR---------KKAKTGDKPGVTKSLHWIR---TPYL 164
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+LDTPG+L P+ D V LA+TGAI D + +E+A + + IL
Sbjct: 165 DLLDTPGVLWPKFEDKTVGFMLAITGAIKDEILEMEEVALFLVSIL 210
>gi|42519031|ref|NP_964961.1| hypothetical protein LJ1105 [Lactobacillus johnsonii NCC 533]
gi|41583318|gb|AAS08927.1| hypothetical protein LJ_1105 [Lactobacillus johnsonii NCC 533]
Length = 279
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 124/249 (49%), Gaps = 29/249 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + D + L+D+++EV DAR+P SS QL P I+VLNK
Sbjct: 6 WYPGHMNKAKNQLEDNLDLIDVLIEVLDARLPVSSRNPMIGQLTKKKP-----HIIVLNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD----YDAS 139
DLA P Q K+W ++ + +++ + N+ K ++ + K+D AS
Sbjct: 61 ADLADPIQTKKWTHYYQDEGNFVISMDAQHTTNMTSLFKIIKLAGK--EKTDKLIAKGAS 118
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ + V + GIPN GKS + N + +GR A V +PG T+ LK +
Sbjct: 119 NPMIRVAIAGIPNCGKSTIINRM--VGR---------NAAIVGDKPGVTRGQSWLK--TK 165
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKKW 257
N+ +LDTPGIL P+ D EV KLA GAI ++A + + L N+ D+ K+
Sbjct: 166 TNVQILDTPGILWPKFSDQEVGYKLAACGAIKADIFHPDDVALFVIEFLKQNYRDDLVKF 225
Query: 258 AKFSINQIN 266
A+ S +++
Sbjct: 226 ARISSEEMD 234
>gi|397170366|ref|ZP_10493782.1| GTPase YlqF [Alishewanella aestuarii B11]
gi|396088033|gb|EJI85627.1| GTPase YlqF [Alishewanella aestuarii B11]
Length = 311
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 116/223 (52%), Gaps = 31/223 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + IA+ MP VDII+E+ DARIPFSSE QLR P I VLNK
Sbjct: 5 WFPGHMHKARKEIAEVMPQVDIIIEMLDARIPFSSENPLVPQLRKDTPC-----IKVLNK 59
Query: 84 MDLASPTQFKEWITFF-DQQNCPSFGVNSHNKDNVKEFLKFLQAHV--RNLRKSDYDASS 140
DLA P W+ +F +Q+N + ++ + +K L+ + + RNL A
Sbjct: 60 ADLADPALTARWVDYFAEQKNVRAIPISQQQPEQIKALLELCNSMLPERNLEVRAARA-- 117
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
M++GIPNVGKS L N+L GR T A+ G + G TK +K+ +
Sbjct: 118 -----MIMGIPNVGKSTLINTLA--GR-TIAKTGN--------EAGVTKAQQRIKLEN-- 159
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
N+ + DTPG L P++ +LA+TGAI D+ ++A +
Sbjct: 160 NVILTDTPGFLWPKLSPTTCGYRLAVTGAIKDTVFDYADIALF 202
>gi|354565742|ref|ZP_08984916.1| ribosome biogenesis GTP-binding protein YlqF [Fischerella sp.
JSC-11]
gi|353548615|gb|EHC18060.1| ribosome biogenesis GTP-binding protein YlqF [Fischerella sp.
JSC-11]
Length = 293
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 17/225 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H+A A + + +++ LVD++LEVRDARIP S+ Q+ + +R+LVLN++D+
Sbjct: 14 WYPGHIAKAEKNLKEQLKLVDVVLEVRDARIPLSTFHPQIPQW--IGNKKRLLVLNRLDM 71
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAH--VRNLRKSDYDASSDTVT 144
S + W +F +Q F N+ V K QA N R+ D V
Sbjct: 72 ISEQVRQLWADWFKRQGEQVFFTNAQQGQGVTAVSKATQATGVELNQRRRDRGMLPRPVR 131
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
+++G PNVGKSAL N L +GR R + +PG T+ + ++I+ ++ +
Sbjct: 132 AVVIGFPNVGKSALINRL--VGR---------RVVESAARPGVTRQLRWVRISE--DLEL 178
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
LD PG++P ++ D E KLA+ IG++ + +A F+ ++N
Sbjct: 179 LDAPGVIPAKLEDQEAGLKLAVCDDIGEAAYDNQLIAAAFVDLVN 223
>gi|401412526|ref|XP_003885710.1| hypothetical protein NCLIV_061080 [Neospora caninum Liverpool]
gi|325120130|emb|CBZ55684.1| hypothetical protein NCLIV_061080 [Neospora caninum Liverpool]
Length = 455
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 113/233 (48%), Gaps = 17/233 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ PHM AT AI + VD +LEVRDAR P +S + L + S +R++VLNK DL
Sbjct: 125 WFPPHMNRATVAIEKNLKHVDCVLEVRDARAPLTSGNNFLTDRLARSGVKRLVVLNKADL 184
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVM 146
+ P + V + + F HVR K+ V ++
Sbjct: 185 VHKRDGLRAQAVLEDAGLPCLLTCAPELKRVSKIVDFAFEHVRPKFKTI------GVWML 238
Query: 147 LLGIPNVGKSALANSLHQIGRITAAEKG----------KLRHATVSPQPGETKDIYSLKI 196
L+G+PN GKS+L N++ ++ + A+ G K A PG TK++ + +I
Sbjct: 239 LMGLPNTGKSSLLNAMKRLA-VNASRYGTSSNKLVEGVKRTRAKEGKAPGLTKEVGAFQI 297
Query: 197 ASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
++ P ++ DTPGI+ P++ D EV KLA G I D G +A Y L LN
Sbjct: 298 SNKPRLFCYDTPGIMLPKMKDAEVNLKLAALGCIDDHRAGEMYVADYILYHLN 350
>gi|322391938|ref|ZP_08065402.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus peroris
ATCC 700780]
gi|321145164|gb|EFX40561.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus peroris
ATCC 700780]
Length = 283
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 119/243 (48%), Gaps = 21/243 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L R+L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPML--TKIIGDKPRLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A P KEW F+ Q + +NS + VK + K L + R+ + +T+
Sbjct: 64 ADPVLTKEWRQHFESQGIQTLAINSKEQITVKVVTDAAKKLMVE-KIARQKERGIQIETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + A V +PG TK K ++ ++
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWFK--TNKDLE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSIN 263
+LDTPGIL P+ D V KLALTGAI D + E+ + G+ F Y + +
Sbjct: 170 ILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKTNYPEKLQERFK 227
Query: 264 QIN 266
Q+N
Sbjct: 228 QMN 230
>gi|269798034|ref|YP_003311934.1| GTP-binding protein HSR1-like protein [Veillonella parvula DSM
2008]
gi|416999180|ref|ZP_11939849.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella parvula
ACS-068-V-Sch12]
gi|269094663|gb|ACZ24654.1| GTP-binding protein HSR1-related protein [Veillonella parvula DSM
2008]
gi|333977333|gb|EGL78192.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella parvula
ACS-068-V-Sch12]
Length = 301
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 113/232 (48%), Gaps = 35/232 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA ATR I + + VD+++E+ DARIP SS +L P I++LNK
Sbjct: 9 WFPGHMAKATRMITEYIKKVDVVIELLDARIPRSSANPVITELVGQKPH-----IVLLNK 63
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
+DLA P KEW FF +Q ++S + K+ + + V L K D
Sbjct: 64 VDLADPKATKEWTEFFTKQGITVLAIDSKSGKGNKKLI----STVERLSKPIIDRWVAKG 119
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
S +V ++LGIPNVGKS L NSL A K G T+ +KI
Sbjct: 120 IRSRSVRTIILGIPNVGKSTLINSLAGSAATRTANKA-----------GHTRGQQWVKIG 168
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGG----KELAQYFL 245
N+ +LDTPG+L P++ D ++LA+TGAI D K+L Y L
Sbjct: 169 K--NLELLDTPGVLWPKLEDQRAAARLAMTGAISDDVYDLEHVIKQLLNYLL 218
>gi|375111626|ref|ZP_09757830.1| GTPase YlqF [Alishewanella jeotgali KCTC 22429]
gi|374568262|gb|EHR39441.1| GTPase YlqF [Alishewanella jeotgali KCTC 22429]
Length = 311
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 116/223 (52%), Gaps = 31/223 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + IA+ MP VDII+E+ DARIPFSSE QLR P I VLNK
Sbjct: 5 WFPGHMHKARKEIAEVMPQVDIIIEMLDARIPFSSENPLVPQLRKDTPC-----IKVLNK 59
Query: 84 MDLASPTQFKEWITFF-DQQNCPSFGVNSHNKDNVKEFLKFLQAHV--RNLRKSDYDASS 140
DLA P W+ +F +Q+N + ++ + +K L+ + + RNL A
Sbjct: 60 ADLADPALTARWVDYFAEQKNVRAIPISQQQPEQIKALLELCNSMLPERNLEVRAARA-- 117
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
M++GIPNVGKS L N+L GR T A+ G + G TK +K+ +
Sbjct: 118 -----MIMGIPNVGKSTLINTLA--GR-TIAKTGN--------EAGVTKAQQRIKLEN-- 159
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
N+ + DTPG L P++ +LA+TGAI D+ ++A +
Sbjct: 160 NVILTDTPGFLWPKLSPTTCGYRLAVTGAIKDTVFDYADIALF 202
>gi|322373052|ref|ZP_08047588.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
C150]
gi|421452532|ref|ZP_15901893.1| GTP-binding protein [Streptococcus salivarius K12]
gi|321278094|gb|EFX55163.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
C150]
gi|400182963|gb|EJO17225.1| GTP-binding protein [Streptococcus salivarius K12]
Length = 284
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 115/223 (51%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A + KEW T+F Q + +NS + VK + K L A ++ LR + +T
Sbjct: 64 ADSNRTKEWRTYFKSQGIKTLAINSKEQSTVKLVTDAAKSLMADKIQRLR--ERGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D V KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|352103898|ref|ZP_08960138.1| ribosomal biogenesis GTPase [Halomonas sp. HAL1]
gi|350599076|gb|EHA15171.1| ribosomal biogenesis GTPase [Halomonas sp. HAL1]
Length = 318
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 111/214 (51%), Gaps = 28/214 (13%)
Query: 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLN 82
GW+ HM A R I + +P +D+++EV DAR+P+SS +L H P + +L+
Sbjct: 3 GWFPGHMNKARRQIKEVLPEIDVVIEVLDARLPYSSANPMLAELTRHKPV-----LKILS 57
Query: 83 KMDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSD 141
+ DLA P + EW+ FFD Q+N + V + N +K+ K +R +D D
Sbjct: 58 RADLADPERTAEWVEFFDAQENMRALAVTTTNTRELKKIPKLCHELAGAVR-ADRD---- 112
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V VM++GIPNVGKS L N L GR + A +P TK ++I
Sbjct: 113 -VRVMVMGIPNVGKSTLINGLA--GR---------KIAKTGNEPAVTKRQQKVRIDGR-- 158
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFV 235
+ + DTPG+L P+I D +LA TGAI D+ +
Sbjct: 159 VALTDTPGVLWPKIEDQASAYRLAATGAIRDTAI 192
>gi|154483563|ref|ZP_02026011.1| hypothetical protein EUBVEN_01267 [Eubacterium ventriosum ATCC
27560]
gi|149735473|gb|EDM51359.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium
ventriosum ATCC 27560]
Length = 291
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 129/261 (49%), Gaps = 23/261 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A R + + + L+D+++E+ DARIP SS + D L + R+++LNK
Sbjct: 17 WYPGHMTKAVRQMKEDIKLIDLVIELLDARIPLSSRNPDIDDLGKNKA-----RLVLLNK 71
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DLA T +WI +F + + +NS NK +KE +Q + + D +
Sbjct: 72 SDLADETDNNKWIQYFKDKGIIALKINSKNKQGIKEINNAVQIACKEKIERDKKRGIINR 131
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M++GIPNVGKS N+ GR AA+ G +PG TK +K+ + N
Sbjct: 132 PVRAMVVGIPNVGKSTFINAYA--GR-AAAKTGN--------KPGVTKGKQWIKL--NKN 178
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
+ +LDTPGIL P+ + + LA G+I D+ + ELA + +L + ++
Sbjct: 179 LELLDTPGILWPKFDNQTIGMHLAFIGSINDNILDVTELAYQLVKLLATTYPKVVVERYK 238
Query: 262 INQINKPLTLHHKADQSSGSE 282
I PL + ++ + G +
Sbjct: 239 IEGHEDPLQVMYQVAEVRGCK 259
>gi|429736137|ref|ZP_19270054.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp. oral
taxon 138 str. F0429]
gi|429156043|gb|EKX98684.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp. oral
taxon 138 str. F0429]
Length = 300
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 114/225 (50%), Gaps = 20/225 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A R + + + LVD++LE+ DARIP SS LR R++VLNK DL
Sbjct: 15 WYPGHMRKAERLVKENLKLVDVVLELLDARIPLSSANPVLR--EIVGEKPRLIVLNKADL 72
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDASSDTVT 144
A + W+ +F Q + V++ VKE ++ + A + + Y A +
Sbjct: 73 ADEAATRTWVKYFAAQGITAVPVDAVKGHGVKELVQAIAKCAKPKTDKLVQYGAKARAAR 132
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M+LGIPNVGKS+L N R++ K K V +PG T+ +++ + + +
Sbjct: 133 CMILGIPNVGKSSLIN------RLSGGTKTK-----VENRPGVTRAKQWIRLGAQ--LEL 179
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
LD PGIL P+ D + LA TGAI D+ ++A L +LN
Sbjct: 180 LDMPGILWPKFEDQQAALHLAFTGAINDNVY---DVASVVLLLLN 221
>gi|375090694|ref|ZP_09737007.1| ribosome biogenesis GTP-binding protein YlqF [Facklamia languida
CCUG 37842]
gi|374565115|gb|EHR36391.1| ribosome biogenesis GTP-binding protein YlqF [Facklamia languida
CCUG 37842]
Length = 285
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 111/221 (50%), Gaps = 17/221 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA A R +++ LVD+++E+ DARIP SS + S ILVLNK DL
Sbjct: 6 WYPGHMAKARREAEEKLKLVDLVIELVDARIPESSRNPMIAEI--ISQKPSILVLNKQDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSDTVT 144
A + W++++ Q + +++ ++ +K K Q + + ++ +
Sbjct: 64 ADKQMTQAWLSYYQDQGQVALAIDAQHQKGLKPLQKACQDLMADYFAKQKARGVKPRAIR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
+M+LGIPNVGKS L N +G+ A +PG TK LK+ +
Sbjct: 124 LMILGIPNVGKSTLINRF--VGK---------NQAQTGNKPGVTKAQRWLKLGKE--FEL 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
LDTPGIL P+ D + LALTGAI D + +ELA F+
Sbjct: 171 LDTPGILWPKFEDPQTGIHLALTGAIKDQLIEMQELALAFI 211
>gi|77408070|ref|ZP_00784818.1| GTP-binding protein [Streptococcus agalactiae COH1]
gi|410594536|ref|YP_006951263.1| ribosome biogenesis GTPase A [Streptococcus agalactiae SA20-06]
gi|421147340|ref|ZP_15607030.1| GTPase YlqF [Streptococcus agalactiae GB00112]
gi|421532850|ref|ZP_15979194.1| GTPase YlqF [Streptococcus agalactiae STIR-CD-17]
gi|77173335|gb|EAO76456.1| GTP-binding protein [Streptococcus agalactiae COH1]
gi|401686018|gb|EJS82008.1| GTPase YlqF [Streptococcus agalactiae GB00112]
gi|403641862|gb|EJZ02773.1| GTPase YlqF [Streptococcus agalactiae STIR-CD-17]
gi|410518175|gb|AFV72319.1| Ribosome biogenesis GTPase A [Streptococcus agalactiae SA20-06]
Length = 283
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 119/244 (48%), Gaps = 23/244 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A P + KEW F++ Q + +NS + VK + K L + + LR + +T
Sbjct: 64 ADPIRTKEWRDFYESQGLKTLAINSKEQSTVKKVTDIAKILMSDKIAKLR--ERGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262
+LDTPGIL P+ D V KLALTGAI D + E+ G+ F Y K
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVT--IFGLNYFKTYYPDRLKERF 226
Query: 263 NQIN 266
IN
Sbjct: 227 KSIN 230
>gi|347521655|ref|YP_004779226.1| GTP-binding protein [Lactococcus garvieae ATCC 49156]
gi|385832960|ref|YP_005870735.1| GTP-binding protein [Lactococcus garvieae Lg2]
gi|343180223|dbj|BAK58562.1| GTP-binding protein [Lactococcus garvieae ATCC 49156]
gi|343182113|dbj|BAK60451.1| GTP-binding protein [Lactococcus garvieae Lg2]
Length = 285
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 115/229 (50%), Gaps = 29/229 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM+ A R + + + VD ++E+ DAR+P SS D++ P R++ LNK
Sbjct: 7 WFPGHMSKARRQVQENLKYVDFVIELVDARLPISSRNPMLDKIIGDKP-----RLIALNK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASS 140
DLA K W+ FF++Q + +NS K K L A + R ++ +
Sbjct: 62 ADLADRNAVKSWVEFFEKQGIIALAINSKEAHTAKRLTVAAKTLMAD-KLARNAERGIQN 120
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
++ M++GIPN GKS L N L GK + A +PG TK L+ ++
Sbjct: 121 SSLRTMIVGIPNAGKSTLMNRLA----------GK-KVAVTGNKPGVTKGQQWLR--TNK 167
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELA----QYFL 245
+ +LDTPGIL P+ D +V KLALTGAI D + ++ QYFL
Sbjct: 168 ELEILDTPGILWPKFEDDQVGLKLALTGAIKDQLLPMDDVTIFGLQYFL 216
>gi|76787382|ref|YP_329729.1| ribosomal biogenesis GTPase [Streptococcus agalactiae A909]
gi|77407003|ref|ZP_00784017.1| GTP-binding protein [Streptococcus agalactiae H36B]
gi|406709474|ref|YP_006764200.1| ribosomal biogenesis GTPase [Streptococcus agalactiae GD201008-001]
gi|417005257|ref|ZP_11943850.1| ribosomal biogenesis GTPase [Streptococcus agalactiae FSL S3-026]
gi|424049454|ref|ZP_17787005.1| GTPase YlqF [Streptococcus agalactiae ZQ0910]
gi|76562439|gb|ABA45023.1| GTP-binding protein [Streptococcus agalactiae A909]
gi|77174389|gb|EAO77244.1| GTP-binding protein [Streptococcus agalactiae H36B]
gi|341577070|gb|EGS27478.1| ribosomal biogenesis GTPase [Streptococcus agalactiae FSL S3-026]
gi|389649125|gb|EIM70610.1| GTPase YlqF [Streptococcus agalactiae ZQ0910]
gi|406650359|gb|AFS45760.1| ribosomal biogenesis GTPase [Streptococcus agalactiae GD201008-001]
Length = 283
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 119/244 (48%), Gaps = 23/244 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A P + KEW F++ Q + +NS + VK + K L + + LR+ +T
Sbjct: 64 ADPIRTKEWRDFYESQGLKTLAINSKEQSTVKKVTDIAKILMSDKIAKLRER--GIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262
+LDTPGIL P+ D V KLALTGAI D + E+ G+ F Y K
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVT--IFGLNYFKTYYPDRLKERF 226
Query: 263 NQIN 266
IN
Sbjct: 227 KSIN 230
>gi|52080207|ref|YP_078998.1| ribosomal biogenesis GTPase [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319646014|ref|ZP_08000244.1| YlqF protein [Bacillus sp. BT1B_CT2]
gi|404489095|ref|YP_006713201.1| GTPase YlqF [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|423682148|ref|ZP_17656987.1| ribosomal biogenesis GTPase [Bacillus licheniformis WX-02]
gi|81609173|sp|Q65JP4.1|RBGA_BACLD RecName: Full=Ribosome biogenesis GTPase A
gi|52003418|gb|AAU23360.1| GTP-binding domain protein [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52348086|gb|AAU40720.1| GTPase RbgA [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317391764|gb|EFV72561.1| YlqF protein [Bacillus sp. BT1B_CT2]
gi|383438922|gb|EID46697.1| ribosomal biogenesis GTPase [Bacillus licheniformis WX-02]
Length = 283
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 121/247 (48%), Gaps = 29/247 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ L+DI+ E+ DARIP SS + + + RI++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI--LKNKPRIMLLNKADK 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ASS 140
A + K W F++ P+ +NS N + + L + L K +D
Sbjct: 63 ADSSVTKAWKQHFEKDGIPTLAINSVNGQGLNQIL----PASKELLKEKFDKMKAKGVKP 118
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 119 RAIRALIVGIPNVGKSTLINRL-----------AKKNIAKTGDRPGVTTAQQWVKVGKE- 166
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKKWA 258
+ +LDTPGIL P+ D V +LA TGAI DS + +++A Y L L N+ + KK
Sbjct: 167 -LELLDTPGILWPKFEDELVGLRLAATGAIKDSIINLQDVAVYGLRFLEENYPERLKK-- 223
Query: 259 KFSINQI 265
++ + +I
Sbjct: 224 RYDLEEI 230
>gi|338997663|ref|ZP_08636357.1| ribosomal biogenesis GTPase [Halomonas sp. TD01]
gi|338765437|gb|EGP20375.1| ribosomal biogenesis GTPase [Halomonas sp. TD01]
Length = 317
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 112/214 (52%), Gaps = 28/214 (13%)
Query: 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLN 82
GW+ HM A R I D +P +D+++EV DAR+P+SS +L H P + +L+
Sbjct: 3 GWFPGHMNKARRQIKDALPEIDVVIEVLDARLPYSSANPMLAELTRHKPV-----LKILS 57
Query: 83 KMDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSD 141
+ DLA P + EW+ FFD Q++ + + + N +K+ K +R +D D
Sbjct: 58 RADLADPERTAEWVAFFDAQEDTRALAITTTNIRELKKIPKLCHELAGAVR-ADRD---- 112
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V VM++GIPNVGKS L N L GR + A +P TK ++I
Sbjct: 113 -VRVMVMGIPNVGKSTLINGLA--GR---------KIAKTGNEPAVTKRQQKVRIDGR-- 158
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFV 235
+ ++DTPG+L P+I D +LA +GAI D+ +
Sbjct: 159 VALIDTPGVLWPKIEDQASAYRLAASGAIRDTAI 192
>gi|375091720|ref|ZP_09738008.1| ribosome biogenesis GTP-binding protein YlqF [Helcococcus kunzii
ATCC 51366]
gi|374562607|gb|EHR33934.1| ribosome biogenesis GTP-binding protein YlqF [Helcococcus kunzii
ATCC 51366]
Length = 283
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 23/221 (10%)
Query: 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLN 82
WY HM + I + + LVDI+ E+ D+RIP SS D++ P RI++LN
Sbjct: 4 NWYPGHMKKSIDKIRESLKLVDIVAEIVDSRIPISSRNPVIDKILGDFP-----RIIILN 58
Query: 83 KMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASS 140
K+D+A+P + ++WI +F+++N NS + K + + L ++ +
Sbjct: 59 KVDMANPKETRKWIKYFNEKNISVIEFNSTKDKKTNDLYKIARKTLEPLFAKRKEKQIKD 118
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+T+ +M++GIPNVGKS N++ Q KG V +PG T+ + I +
Sbjct: 119 ETIKMMVVGIPNVGKSTFINNVSQ-------RKG----TKVGNRPGVTR--MNQWIRTSS 165
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELA 241
N+ +LDTPG+L P++ + LA TGAI D + ++L
Sbjct: 166 NLLLLDTPGVLWPKLDLPDGGKNLAFTGAIKDEILEIEDLC 206
>gi|420144102|ref|ZP_14651590.1| GTP-binding protein [Lactococcus garvieae IPLA 31405]
gi|391855554|gb|EIT66103.1| GTP-binding protein [Lactococcus garvieae IPLA 31405]
Length = 285
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 115/229 (50%), Gaps = 29/229 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM+ A R + + + VD ++E+ DAR+P SS D++ P R++ LNK
Sbjct: 7 WFPGHMSKARRQVQENLKYVDFVIELVDARLPISSRNPMLDKIIGDKP-----RLIALNK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASS 140
DLA K W+ FF++Q + +NS K K L A + R ++ +
Sbjct: 62 ADLADRNAVKAWVEFFEKQGIIALAINSKEAHTAKRLTVAAKTLMAD-KLARNAERGIQN 120
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
++ M++GIPN GKS L N L GK + A +PG TK L+ ++
Sbjct: 121 SSLRTMIVGIPNAGKSTLMNRLA----------GK-KVAVTGNKPGVTKGQQWLR--TNK 167
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELA----QYFL 245
+ +LDTPGIL P+ D +V KLALTGAI D + ++ QYFL
Sbjct: 168 ELEILDTPGILWPKFEDDQVGLKLALTGAIKDQLLPMDDVTIFGLQYFL 216
>gi|268611247|ref|ZP_06144974.1| GTP-binding protein YlqF [Ruminococcus flavefaciens FD-1]
Length = 293
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 125/264 (47%), Gaps = 30/264 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA R IA + LVD ++E+ DAR P SS E D + + P R++VLNK
Sbjct: 11 WFPGHMAKTRRLIAANLKLVDAVVEIVDARTPLSSRNPEMDSMTRNKP-----RLIVLNK 65
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL-----KFLQAHVRNLRKSDYDA 138
DLA ++WI +F + V+ + +K L K L+ + +S
Sbjct: 66 CDLADKKATQKWINYFRNNGSEAIAVDCKSGKGLKNLLPVVRTKVLKELMEKRERSGMKG 125
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
++ V +M++GIPNVGKS+L N R+ ++ K V +PG T+ +K+ +
Sbjct: 126 AA--VRLMIVGIPNVGKSSLIN------RMAGGKRAK-----VEDRPGVTRTKQWVKLDN 172
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKK 256
N +LD PG+L P+ D +LA TGAI D + + LA L L N+ +
Sbjct: 173 --NTELLDMPGVLWPKFEDQSAAVRLAFTGAISDDILDIETLAMKLLVFLSENYPSSLTE 230
Query: 257 WAKFSINQINKPLTLHHKADQSSG 280
K + + L L K + G
Sbjct: 231 RYKIGYSDDDTGLILLEKVGKKRG 254
>gi|282850262|ref|ZP_06259641.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella parvula
ATCC 17745]
gi|282579755|gb|EFB85159.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella parvula
ATCC 17745]
Length = 301
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 114/231 (49%), Gaps = 31/231 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA ATR I + + VD+++E+ DARIP SS +L P I++LNK
Sbjct: 9 WFPGHMAKATRMITEYIKKVDVVIELLDARIPRSSANPVIFELVGQKP-----HIVLLNK 63
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
+DLA P KEW FF +Q ++S + K+ L + V +L K D
Sbjct: 64 VDLADPKATKEWTEFFTKQGITVLAIDSKSGKGNKKLL----STVEHLSKPIIDRWVAKG 119
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
S +V ++LGIPNVGKS L NSL A K G T+ +KI
Sbjct: 120 IRSRSVRTIILGIPNVGKSTLINSLAGSAATRTANKA-----------GHTRGQQWVKIG 168
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
N+ +LDTPG+L P++ D ++LA+TGAI D + + + L L
Sbjct: 169 K--NLELLDTPGVLWPKLEDQRAAARLAMTGAISDDVYDLEHVIKQLLNYL 217
>gi|427713259|ref|YP_007061883.1| ribosome biogenesis GTP-binding protein YlqF [Synechococcus sp. PCC
6312]
gi|427377388|gb|AFY61340.1| ribosome biogenesis GTP-binding protein YlqF [Synechococcus sp. PCC
6312]
Length = 302
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 125/259 (48%), Gaps = 29/259 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H+A A +A+ +++ VD++LEVRDARIP +S Q+ + R+L+LN++D+
Sbjct: 29 WYPGHIAKAEKALKEQLSRVDVVLEVRDARIPLASFHPQIPAW--IGTKPRLLILNRLDM 86
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAH--VRNLRKSDYDASSDTVT 144
SP + ++W +F Q + N D V K QA N R+ + V
Sbjct: 87 ISPLEREQWQAWFRSQAESPYFANGQTGDGVVAIFKAAQAAGVTVNERRKLRGMNPRPVR 146
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
++LG PNVGKSAL N L K + A + +PG T+ + ++I+ + +
Sbjct: 147 AVVLGFPNVGKSALINRLL-----------KRKIAASAARPGVTRQLRWIRISDQ--LEL 193
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
LD PG+LP + D KLA+ IG++ + +A + +L +NQ
Sbjct: 194 LDAPGVLPANLKDQNAAIKLAICDDIGEAAYDNQRVAAALIDLLQ-----------DLNQ 242
Query: 265 INKPLTLHHKA-DQSSGSE 282
+ L + D+ SG E
Sbjct: 243 APRLLNRYQVGLDERSGEE 261
>gi|440780920|ref|ZP_20959391.1| GTPase YlqF [Clostridium pasteurianum DSM 525]
gi|440221508|gb|ELP60713.1| GTPase YlqF [Clostridium pasteurianum DSM 525]
Length = 288
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 118/222 (53%), Gaps = 27/222 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA R I + + LVD ++E+RD+RI SS E D++ P RI++LNK
Sbjct: 11 WFPGHMAKTRREIKENLKLVDAVIEIRDSRIVQSSANPEIDKICKDKP-----RIILLNK 65
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNK---DNVK-EFLKFLQAHVRNLRKSDYDAS 139
DL+ KEWI + N + VNS N +++K E K L+ + L++
Sbjct: 66 CDLSEEKVTKEWINVLSKNNVKALAVNSLNGLGLNSIKGEIDKLLKEKIDRLKQK--GVI 123
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
S + M++GIPNVGKS+ N ++ + TAA+ G +PG TK +K +
Sbjct: 124 SVIIRAMVVGIPNVGKSSFIN---KMAKNTAAKIG--------DKPGVTKSKQWIK--TK 170
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELA 241
I ++DTPG+L P+ + +V LA TGAI D + +ELA
Sbjct: 171 MGIELMDTPGVLWPKFEEKKVGLNLAFTGAIKDEIMDVEELA 212
>gi|291546335|emb|CBL19443.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus sp.
SR1/5]
Length = 285
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 133/263 (50%), Gaps = 29/263 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A R + + + L+D+I+E+ DAR+P SS + D+L + R+++LNK
Sbjct: 5 WYPGHMTKAKRQMQEDIKLIDLIIELVDARVPLSSRNPDIDELGKNKA-----RMILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDY--DASSD 141
DLA Q + W+ +F ++ + ++S NK ++K + + + D +
Sbjct: 60 ADLADERQNRAWMEYFKEKGIYAVSIDSRNKGSMKAVSAAITEACKEKTERDRRRGIKNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M+ GIPNVGKS N+ GK A +PG TK +++ + +
Sbjct: 120 PVRAMVAGIPNVGKSTFINTFA----------GKA-CAKTGNKPGVTKGKQWIRL--NKS 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWA--- 258
+ +LDTPGIL P+ D EV +LA G+I D + +ELA LG++ + E+ A
Sbjct: 167 VELLDTPGILWPKFEDQEVGMRLAYIGSIKDDILNIEELA---LGLIGYLQEFYPAAIRE 223
Query: 259 KFSINQINKPLTLHHKADQSSGS 281
++++ + KPL + ++ G
Sbjct: 224 RYNVEEELKPLDILTAVAKARGC 246
>gi|288553082|ref|YP_003425017.1| hypothetical protein BpOF4_00280 [Bacillus pseudofirmus OF4]
gi|288544242|gb|ADC48125.1| hypothetical protein BpOF4_00280 [Bacillus pseudofirmus OF4]
Length = 285
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 119/225 (52%), Gaps = 24/225 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ P R+++LNK
Sbjct: 5 WFPGHMAKARREVTEKLKLIDVVIELVDARLPLSSRNPMMDEIVGQKP-----RLVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEF---LKFLQAHVRNLRKSDYDASS 140
DLA P K+W +F+++ +N+ V++ + L + + KS
Sbjct: 60 ADLADPHMTKKWAGYFEEKGATVLAINAQTGKGVEKISGACRKLASPLIEKWKSK-GMKP 118
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ M+LGIPNVGKS L N L A++K A V +PG TK +K+ +
Sbjct: 119 RAIRGMILGIPNVGKSTLINRL-------ASKK----IAKVGDRPGVTKKQQWIKVGND- 166
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D + +LA TGAI D + +++A + L
Sbjct: 167 ELELLDTPGILWPKFEDQVIGYRLAATGAIKDELLDFQDIALFVL 211
>gi|398814561|ref|ZP_10573242.1| ribosome biogenesis GTP-binding protein YlqF [Brevibacillus sp.
BC25]
gi|398036830|gb|EJL30039.1| ribosome biogenesis GTP-binding protein YlqF [Brevibacillus sp.
BC25]
Length = 297
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 116/224 (51%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ + P R+++LNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELLDARLPLSSRNPMIDEIVSDKP-----RLILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
DLA EWI +F +Q + +++ + V + + + ++ ++S+
Sbjct: 60 ADLADERATDEWIAYFRKQGIRTLPIDALSGKGVSKLPEMCKELAADMLAKRSERGMQGR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ +M+LGIPNVGKS+L N L K A +P TK +K+
Sbjct: 120 AIRIMILGIPNVGKSSLINRLS-----------KRSVAATGDRPAVTKAQQWVKMGD--T 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D V +LA +GAI D + E+A + +
Sbjct: 167 LELLDTPGILWPKFEDQMVGLRLAASGAIKDELIDFTEVALFVI 210
>gi|319892259|ref|YP_004149134.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus
pseudintermedius HKU10-03]
gi|317161955|gb|ADV05498.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus
pseudintermedius HKU10-03]
Length = 290
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 122/249 (48%), Gaps = 37/249 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R + +++ VD++ E+ DARIPFSS D++ P R+++ NK
Sbjct: 5 WYPGHMAKAKREVTEQLKKVDVVFELVDARIPFSSRNPMIDEVIQQKP-----RVVIFNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKS 134
D+ + + ++W FF ++ V++ + +K KF + V+ L+
Sbjct: 60 KDMTNLKEMEKWYAFFREKGAYPVAVDAKHGKGLKNVEAAAIEATREKFEREKVKGLKPR 119
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ M++GIPNVGKS L N L + A+ G +PG TK +
Sbjct: 120 -------AIRAMIVGIPNVGKSTLINKL---ANRSIAQTGN--------KPGVTKQQQWI 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
K+ ++ +LDTPGIL P+ D + KL+LTGAI DS V E+A Y L L D
Sbjct: 162 KVGK--SLQLLDTPGILWPKFEDQLIGKKLSLTGAIKDSIVHLDEVAIYGLEFLIEHDYE 219
Query: 255 KKWAKFSIN 263
A F I+
Sbjct: 220 ALLAHFKID 228
>gi|225374457|ref|ZP_03751678.1| hypothetical protein ROSEINA2194_00072 [Roseburia inulinivorans DSM
16841]
gi|225213695|gb|EEG96049.1| hypothetical protein ROSEINA2194_00072 [Roseburia inulinivorans DSM
16841]
Length = 284
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 114/227 (50%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A R + + + L+D+++E+ DARIP SS + D+L + R++++NK
Sbjct: 5 WYPGHMTKAKRQMQEDIKLIDLVIELVDARIPLSSRNPDIDELGKNKA-----RLIIMNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DL+ Q KEW +F + C G+++ K +K + + + D +
Sbjct: 60 SDLSDENQNKEWAAYFKKMGCYVVGLDARTKAGMKTVTNVVMEACKEKIERDRRRGILNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M++GIPNVGKS NS G+ A K PG TK +++ + N
Sbjct: 120 PVRAMVVGIPNVGKSTFINSYA--GKACAKTGNK---------PGVTKGKQWIRL--NKN 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P+ D V +LAL GAI D + EL+ + +L
Sbjct: 167 LELLDTPGILWPKFEDQMVGLRLALIGAIKDEILNIDELSLELIKVL 213
>gi|365924909|ref|ZP_09447672.1| GTP-binding protein, GTPase [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|420266411|ref|ZP_14768882.1| GTP-binding protein, GTPase [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|394425487|gb|EJE98450.1| GTP-binding protein, GTPase [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 286
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 112/228 (49%), Gaps = 32/228 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + + + VDI+LE+ DAR+P SS QL + ILVL K DL
Sbjct: 6 WFPGHMAKALRQVKENIKQVDIVLELVDARLPESSRNPQL--AQILQNKPSILVLTKKDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHN------KDNVKEFLK---FLQAHVRNLRKSDYD 137
A W+ +++ Q P+ VNS ++ +K+ L LQA L K
Sbjct: 64 ADSQTTAGWVRYYESQKQPAIAVNSTTGSLKIIEEKIKQVLADKIALQAQKGILHKR--- 120
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ VM +GIPNVGKS L N L K A V +PG TK LK
Sbjct: 121 -----IKVMCIGIPNVGKSTLLNHLV-----------KKNVAQVGNRPGVTKSQQWLK-- 162
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ ++ +LDTPGIL P+ D + KLALTGAI ++ ++A Y L
Sbjct: 163 AGKDMLLLDTPGILWPKFEDPMIGKKLALTGAIKETLYAKDDIALYLL 210
>gi|226313197|ref|YP_002773091.1| ribosome biogenesis GTPase [Brevibacillus brevis NBRC 100599]
gi|226096145|dbj|BAH44587.1| ribosome biogenesis GTPase [Brevibacillus brevis NBRC 100599]
Length = 297
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 116/224 (51%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ + P R+++LNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELLDARLPLSSRNPMIDEIVSDKP-----RLILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
DLA EWI +F +Q + +++ + V + + + ++ ++S+
Sbjct: 60 ADLADERATDEWIAYFRKQGIRTLPIDALSGKGVSKLPEMCKELAADMLAKRSERGMQGR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ +M+LGIPNVGKS+L N L K A +P TK +K+
Sbjct: 120 AIRIMILGIPNVGKSSLINRLS-----------KRSVAATGDRPAVTKAQQWVKMGD--T 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D V +LA +GAI D + E+A + +
Sbjct: 167 LELLDTPGILWPKFEDQMVGLRLAASGAIKDELIDFTEVALFVI 210
>gi|448747795|ref|ZP_21729448.1| GTP-binding protein, ribosome biogenesis, YlqF [Halomonas titanicae
BH1]
gi|445564581|gb|ELY20699.1| GTP-binding protein, ribosome biogenesis, YlqF [Halomonas titanicae
BH1]
Length = 325
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 36/252 (14%)
Query: 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLN 82
GW+ HM A R I + +P +D+++EV DAR+P+SS +L H P + +L+
Sbjct: 10 GWFPGHMNKARRQIKEVLPEIDVVIEVLDARLPYSSANPMLAELTRHKPV-----LKILS 64
Query: 83 KMDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSD 141
+ DLA P + EW+ +FD Q+N + V + N +K+ K +R +D D
Sbjct: 65 RADLADPERTAEWVAYFDAQENMRALAVTTTNTRELKKIPKLCHELAGAVR-ADRD---- 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V VM++GIPNVGKS L N L GR + A +P TK ++I
Sbjct: 120 -VRVMVMGIPNVGKSTLINGLA--GR---------KIAKTGNEPAVTKRQQKVRIDGR-- 165
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDS--------FVGGKELAQYFLGILNFSDE 253
+ + DTPG+L P+I D +LA TGAI D+ V ELA+ + L +
Sbjct: 166 VALTDTPGVLWPKIEDQASAYRLAATGAIRDTAIEYADVAIVTSAELAKRYPEALTERYK 225
Query: 254 YKKWAKFSINQI 265
K+ ++ I
Sbjct: 226 LKELPSYTAPDI 237
>gi|427439148|ref|ZP_18923890.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus lolii
NGRI 0510Q]
gi|425788526|dbj|GAC44678.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus lolii
NGRI 0510Q]
Length = 277
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 118/233 (50%), Gaps = 33/233 (14%)
Query: 32 MAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ 91
MA A R + +++ LVD++ E+ DARIP SS + + +L+L K DLA P +
Sbjct: 1 MAKAIRQVEEKLKLVDVVFELVDARIPVSSRNPMIES--VIKDKPHLLILTKADLADPQE 58
Query: 92 FKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV---------RNLRKSDYDASSDT 142
+ W+ +F + + +NS K LK +A + R ++K++
Sbjct: 59 TQRWLEYFRKNGDHAVALNSKEPSTEKIILKHTRAILVDKLENWESRGIKKTE------- 111
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M +GIPNVGKS L N H + + + A +PG TK LK S +
Sbjct: 112 IKSMCIGIPNVGKSTLLN--HLVNK---------KVAITGDRPGVTKKQQWLK--SRQGL 158
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYK 255
Y+LDTPGIL P+ D V SKLA TGAI D+ ++A + L I FSD+Y+
Sbjct: 159 YLLDTPGILWPKFEDQSVGSKLAFTGAIKDNLYANDDVALFGLQI--FSDKYR 209
>gi|71903521|ref|YP_280324.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS6180]
gi|94988630|ref|YP_596731.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS9429]
gi|94992453|ref|YP_600552.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS2096]
gi|209559441|ref|YP_002285913.1| ribosomal biogenesis GTPase [Streptococcus pyogenes NZ131]
gi|306827336|ref|ZP_07460623.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pyogenes ATCC 10782]
gi|417856859|ref|ZP_12501918.1| GTPase YlqF [Streptococcus pyogenes HKU QMH11M0907901]
gi|71802616|gb|AAX71969.1| GTP-binding protein [Streptococcus pyogenes MGAS6180]
gi|94542138|gb|ABF32187.1| GTP-binding protein [Streptococcus pyogenes MGAS9429]
gi|94545961|gb|ABF36008.1| GTP-binding protein [Streptococcus pyogenes MGAS2096]
gi|209540642|gb|ACI61218.1| GTP-binding protein [Streptococcus pyogenes NZ131]
gi|304430483|gb|EFM33505.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pyogenes ATCC 10782]
gi|387933814|gb|EIK41927.1| GTPase YlqF [Streptococcus pyogenes HKU QMH11M0907901]
Length = 282
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 115/223 (51%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENVKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A T+ KEW +++ Q + +NS + VK E K L A ++ LR + +T
Sbjct: 64 ADATRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEAAKELMADKIQRLR--ERGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D V KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|417002721|ref|ZP_11942025.1| ribosome biogenesis GTP-binding protein YlqF [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325479009|gb|EGC82110.1| ribosome biogenesis GTP-binding protein YlqF [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 280
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 127/264 (48%), Gaps = 32/264 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM I D + LVDI+LE+ DARIP SS D++ P R++++NK
Sbjct: 7 WFPGHMKKTKEIIIDNLKLVDIVLEIIDARIPNSSRNPMLDEIIADKP-----RMIIMNK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL------RKSDYD 137
DL+ P++ K+WI F Q P+ +NS NV K +NL + + +
Sbjct: 62 SDLSDPSENKKWIDKFKSQGIPAIAMNSKENVNVDRIYK----EAKNLLSEKFKKNEEKN 117
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ + +M++G+PN GKS N + K + A V +PG T+ +K
Sbjct: 118 IENPLIRMMIVGVPNSGKSTFINKV-----------SKKKGAKVGNRPGITQSKQWIKTG 166
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
S NI +LDTPG+L P+ D EV L+ T AI D + ++L FL + +
Sbjct: 167 S--NIQLLDTPGVLWPK-FDEEVGLHLSFTNAIKDEVLNIEDLTLKFLEEMKETKPEALK 223
Query: 258 AKFSINQINKPLTLHHKADQSSGS 281
++ IN + LT++ + G+
Sbjct: 224 ERYGINPEDPALTIYEAIAKRRGA 247
>gi|255657929|ref|ZP_05403338.1| ribosome biogenesis GTP-binding protein YlqF [Mitsuokella multacida
DSM 20544]
gi|260850122|gb|EEX70129.1| ribosome biogenesis GTP-binding protein YlqF [Mitsuokella multacida
DSM 20544]
Length = 307
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 19/238 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM A R I + + LVD+++E+ DARIP SS L R++ LNK DL
Sbjct: 14 WFPGHMKKAQRLIEENLKLVDVVIELLDARIPASSANPML--AEIIKGKPRLIALNKSDL 71
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDASSDTVT 144
A K W+ +F Q P+ ++S +K+ + + A + R
Sbjct: 72 ADAASTKRWLAYFRAQGIPAVAIDSVKGRGMKQLVAKAEELARPKTDRFVKAGGRPRAAR 131
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M+LGIPNVGKS+L N L + AA+K PG T+ +KI + + +
Sbjct: 132 CMILGIPNVGKSSLINRLAGAVKAKAADK-----------PGVTRAKQWIKIGAA--LDL 178
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKKWAKF 260
LDTPGIL P+ D V KLA TGAI D +++ L ++ ++ + ++ KF
Sbjct: 179 LDTPGILWPKFEDQTVGLKLAFTGAINDEIYDREQVTALLLSVMRRDYPERLQERFKF 236
>gi|50914224|ref|YP_060196.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS10394]
gi|50903298|gb|AAT87013.1| GTP-binding protein [Streptococcus pyogenes MGAS10394]
Length = 282
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 115/223 (51%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENVKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A T+ KEW +++ Q + +NS + VK E K L A ++ LR + +T
Sbjct: 64 ADATRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEAAKELMADKIQRLR--ERGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D V KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|313892688|ref|ZP_07826271.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp. oral
taxon 158 str. F0412]
gi|313442779|gb|EFR61188.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp. oral
taxon 158 str. F0412]
Length = 301
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 108/217 (49%), Gaps = 31/217 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA ATR I + + VD+++E+ DARIP SS +L P I++LNK
Sbjct: 9 WFPGHMAKATRMITEYIKKVDVVIELLDARIPRSSANPVITELVGQKPH-----IVLLNK 63
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
+DLA P KEW FF +Q ++S + K+ + + V L K D
Sbjct: 64 VDLADPKATKEWTEFFTKQGITVLAIDSKSGKGNKKLI----STVERLSKPIIDRWVAKG 119
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
S +V ++LGIPNVGKS L NSL A K G T+ +KI
Sbjct: 120 IRSRSVRTIILGIPNVGKSTLINSLAGSAATRTANKA-----------GHTRGQQWVKIG 168
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSF 234
N+ +LDTPG+L P++ D ++LA+TGA+ D
Sbjct: 169 K--NLELLDTPGVLWPKLEDQRAAARLAMTGAVSDDV 203
>gi|429759493|ref|ZP_19291991.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella atypica
KON]
gi|429179454|gb|EKY20701.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella atypica
KON]
Length = 301
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 108/217 (49%), Gaps = 31/217 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA ATR I + + VD+++E+ DARIP SS +L P I++LNK
Sbjct: 9 WFPGHMAKATRMITEYIKKVDVVIELLDARIPRSSANPVILELVGQKPH-----IVLLNK 63
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
+DLA P KEW FF QQ ++S + K+ + + V L K D
Sbjct: 64 VDLADPKATKEWTEFFTQQGITVLAIDSKSGKGNKKLV----STVERLSKPIIDRWVAKG 119
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
S ++ ++LGIPNVGKS L NSL A K G T+ +KI
Sbjct: 120 IRSRSIRTIILGIPNVGKSTLINSLAGSAATRTANKA-----------GHTRGQQWVKIG 168
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSF 234
N+ +LDTPG+L P++ D ++LA+TGAI D
Sbjct: 169 K--NMELLDTPGVLWPKLEDQRAAARLAMTGAISDDV 203
>gi|303228991|ref|ZP_07315801.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella atypica
ACS-134-V-Col7a]
gi|302516405|gb|EFL58337.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella atypica
ACS-134-V-Col7a]
Length = 301
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 108/217 (49%), Gaps = 31/217 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA ATR I + + VD+++E+ DARIP SS +L P I++LNK
Sbjct: 9 WFPGHMAKATRMITEYIKKVDVVIELLDARIPRSSANPVILELVGQKPH-----IVLLNK 63
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
+DLA P KEW FF QQ ++S + K+ + + V L K D
Sbjct: 64 VDLADPKATKEWTEFFTQQGITVLAIDSKSGKGNKKLV----STVERLSKPIIDRWVAKG 119
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
S ++ ++LGIPNVGKS L NSL A K G T+ +KI
Sbjct: 120 IRSRSIRTIILGIPNVGKSTLINSLAGSAATRTANKA-----------GHTRGQQWVKIG 168
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSF 234
N+ +LDTPG+L P++ D ++LA+TGAI D
Sbjct: 169 K--NMELLDTPGVLWPKLEDQRAAARLAMTGAISDDV 203
>gi|302386483|ref|YP_003822305.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
saccharolyticum WM1]
gi|302197111|gb|ADL04682.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
saccharolyticum WM1]
Length = 280
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 117/239 (48%), Gaps = 29/239 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A RA+ + + L+D+I+E+ DAR+P SS + D+L + RI++LNK
Sbjct: 5 WYPGHMTKAKRAMKEDIKLIDLIIELVDARVPLSSRNPDIDEL-----GAGKARIVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DLA W ++F+ Q C VNS N +K+ +Q + + D +
Sbjct: 60 SDLADERCNSVWQSYFETQGCHVVKVNSRNGAGLKQINGVVQEACKEKIERDRRRGILNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M++GIPNVGKS NS GK A +PG TK +++ + +
Sbjct: 120 PVRAMVVGIPNVGKSTFINSFA----------GKA-CAKTGNRPGVTKGNQWIRL--NKS 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN------FSDEY 254
+ +LDTPGIL P D +V +LAL G++ D + ELA + L SD Y
Sbjct: 167 LELLDTPGILWPRFEDQQVGIRLALIGSVNDEILNKDELAMELIRFLTKKYPQVLSDRY 225
>gi|228476732|ref|ZP_04061398.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
salivarius SK126]
gi|228251603|gb|EEK10704.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
salivarius SK126]
Length = 284
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 116/223 (52%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A + KEW ++F+ Q + +NS + VK + K L A ++ LR + +T
Sbjct: 64 ADSNRTKEWRSYFESQGIKTLAINSKEQSTVKLVTDAAKSLMADKIQRLR--ERGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D V KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|377556018|ref|ZP_09785741.1| GTP-binding protein [Lactobacillus gastricus PS3]
gi|376168756|gb|EHS87484.1| GTP-binding protein [Lactobacillus gastricus PS3]
Length = 290
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 114/229 (49%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R I ++MPLVD++ E+ DAR+P+SS E D P R+L++ K
Sbjct: 6 WFPGHMAKALRQIREQMPLVDLVFELVDARVPYSSQNPEVDLAAGDKP-----RLLIMTK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDAS 139
DLA P KEW+ FF Q P ++S + K+ K L + N ++
Sbjct: 61 TDLADPEVTKEWLAFFKNQGQPVLALDSREQQVAKKVTNAAKKVLADKMAN--EAAKGMQ 118
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M +G+PNVGKS L N H + + AA + +PG T L+ S
Sbjct: 119 KRAIKAMCVGVPNVGKSTLLN--HLVHKNVAA---------TANRPGVTTGQQWLR--SS 165
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPG+L P+ + + LAL+GAI DS ++A + L L
Sbjct: 166 AELELLDTPGVLWPKFATTKQGTMLALSGAIKDSLYPKDDVAIFALDYL 214
>gi|339624739|ref|ZP_08660528.1| GTP-binding protein YlqF [Fructobacillus fructosus KCTC 3544]
Length = 281
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 116/237 (48%), Gaps = 26/237 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HMA A R + + + LVDI+ E+ DAR+P SS E D+L P R+LVL K
Sbjct: 7 WYPGHMAKAFRLMRENLSLVDIVFELVDARLPLSSRNPEVDKLIEKKP-----RLLVLTK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSD 141
DLA P + W +F++Q +++ + K + ++ + +
Sbjct: 62 ADLADPKETSAWKAYFERQGLAVVVLDTRGPKTAQVMTKAAKQVLKEQLAAQEAKGIKNR 121
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ VML GIPNVGKS L N L Q A K PG TK + LK A+
Sbjct: 122 PIRVMLAGIPNVGKSTLLNHLVQKNVAITANK-----------PGVTKKVAWLKTAT--G 168
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWA 258
+ +LD+PG+L P+ D ++ +LALTGA+ D+ + A L +L + Y + A
Sbjct: 169 LEILDSPGVLWPKFEDQKIGQRLALTGAVKDTIFAKDDAA---LSMLAYFRNYNQQA 222
>gi|338813257|ref|ZP_08625386.1| GTP-binding protein HSR1-related protein [Acetonema longum DSM
6540]
gi|337274616|gb|EGO63124.1| GTP-binding protein HSR1-related protein [Acetonema longum DSM
6540]
Length = 281
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 120/241 (49%), Gaps = 17/241 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R I++ + L+D+++E+ DARIP SS + R++ NK DL
Sbjct: 5 WFPGHMAKARRVISEHLKLIDVVIELLDARIPESSANPMI--QEIVGDKPRVIAFNKADL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFL-QAHVRNLRKSDYDA-SSDTVT 144
A ++W+ F +Q P + + + +K+ ++++ QA L K + S V
Sbjct: 63 ADSRHTEQWMARFKEQGLPVAAIEAVSGKGLKQLIQYVEQAAAEKLAKWEAKGIKSRPVR 122
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M+LGIPNVGKS+L N L + A + PG T+ +KI + + +
Sbjct: 123 AMVLGIPNVGKSSLINRLLGTATVKTANR-----------PGVTRGQQWIKIGNR--LEL 169
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
LDTPG+L P++ D V KLA+TGA+ D + + + L + +FS+ +
Sbjct: 170 LDTPGVLWPKMDDQAVAFKLAVTGAVKDDVYDYDTVLKQLVDFLRQEYPGRLIERFSLTE 229
Query: 265 I 265
I
Sbjct: 230 I 230
>gi|222153078|ref|YP_002562255.1| ribosomal biogenesis GTPase [Streptococcus uberis 0140J]
gi|222113891|emb|CAR42061.1| putative GTPase protein [Streptococcus uberis 0140J]
Length = 284
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 115/223 (51%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTK--IVGEKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASSDT 142
A + KEW ++++Q + +NS + VK+ K + ++ L++ S
Sbjct: 64 ADQSLTKEWCRYYEEQGIKTLAINSKEQATVKKVTEAAKKLMAEKLQKLKERGIQKQS-- 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D EV KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDEEVGLKLALTGAIKDQLLPLDEVTIFGL 211
>gi|452991215|emb|CCQ97470.1| Ribosome biogenesis GTPase A [Clostridium ultunense Esp]
Length = 282
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 112/225 (49%), Gaps = 17/225 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM +I + LVDI+ EV DARIPFSS+ ++ RI++LNK DL
Sbjct: 5 WYPGHMKKTKESIKKNLSLVDIVYEVIDARIPFSSQNPEI--DGILGRKSRIIILNKSDL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRK--SDYDASSDTVT 144
A K+W +F ++ S V+ N ++E +K R+ + + +
Sbjct: 63 ADMESNKKWQDYFGKKGISSVIVDCINNRGLEEVIKLSYRLTGERRRHLAKKGIKNRPIR 122
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
VM++G+PNVGKS L NSL K + V +PG T+ +++ ++ +
Sbjct: 123 VMIVGVPNVGKSTLINSLS-----------KRKGTKVGNKPGVTRVNQWIRLKG--DLEL 169
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
LDTPGIL P+ D EV LA TGAI D + + LA + LN
Sbjct: 170 LDTPGILWPKFEDKEVGLNLAFTGAIKDELLDIENLAIKLVERLN 214
>gi|315648160|ref|ZP_07901261.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus vortex
V453]
gi|315276806|gb|EFU40149.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus vortex
V453]
Length = 288
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 126/244 (51%), Gaps = 34/244 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A R I +++ L+D ++E+ DAR+P SS D++ P R++++NK
Sbjct: 5 WFPGHMTKARRQIQEKLKLIDAVIELIDARLPLSSRNPMIDEILQGKP-----RLIIMNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
DLA P ++W +F + + +F V++ +K+ + ++ L K D
Sbjct: 60 ADLADPEVTRQWQAYFKENSLTAFPVDASTGTGIKD----IPNQIKLLLKEKIDKQIAKG 115
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ + V+++GIPNVGKS L N L GR AE G +PG TK +K+A
Sbjct: 116 MNPRAMRVLIVGIPNVGKSTLINRLA--GR-NIAETGD--------RPGVTKGQQWIKVA 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA+TGAI + + +++A + I FS+ Y W
Sbjct: 165 GG-EMELLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNVEDIA--YFAIKYFSNYY--W 219
Query: 258 AKFS 261
S
Sbjct: 220 ETMS 223
>gi|169350422|ref|ZP_02867360.1| hypothetical protein CLOSPI_01190 [Clostridium spiroforme DSM 1552]
gi|169292742|gb|EDS74875.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
spiroforme DSM 1552]
Length = 288
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 116/228 (50%), Gaps = 25/228 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R I+++M L+DI++E+ DAR P SS+ FDQ+ N+ P R++V+ K
Sbjct: 7 WFPGHMAKARREISEKMKLIDIVVELVDARAPLSSKNPMFDQICNNKP-----RLIVMTK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
DLA WI +F +N + VN N + ++ + + ++ R++ S
Sbjct: 62 KDLADDKVTALWIEYFKSKNLHAICVNLKNFNEYQQVINVCKEILKEKMEREAKRGLKSR 121
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVS-PQPGETKDIYSLKIASHP 200
+ M+LGIPNVGKS N L + R ATV+ +PG TK +++
Sbjct: 122 AMRAMILGIPNVGKSTFINRLAK------------RKATVTGNRPGVTKAQQIIRVDKDF 169
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
++ DTPG+L P D+ + +AL G+I + EL Y + L
Sbjct: 170 ELF--DTPGVLWPRFEDINIARNIALIGSIKQDILPLDELFIYAIEYL 215
>gi|387784251|ref|YP_006070334.1| GTP-binding protein [Streptococcus salivarius JIM8777]
gi|338745133|emb|CCB95499.1| GTP-binding protein [Streptococcus salivarius JIM8777]
Length = 284
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 116/223 (52%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A + KEW ++F+ Q + +NS + VK + K L A ++ LR + +T
Sbjct: 64 ADSNRTKEWRSYFESQGIKTLAINSKEQSTVKLVTDAAKSLMADKIQRLR--ERGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D V KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|303231444|ref|ZP_07318175.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella atypica
ACS-049-V-Sch6]
gi|302513881|gb|EFL55892.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella atypica
ACS-049-V-Sch6]
Length = 301
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 108/217 (49%), Gaps = 31/217 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA ATR I + + VD+++E+ DARIP SS +L P I++LNK
Sbjct: 9 WFPGHMAKATRMITEYIKKVDVVIELLDARIPRSSANPVILELVGQKPH-----IVLLNK 63
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
+DLA P KEW FF QQ ++S + K+ + + V L K D
Sbjct: 64 VDLADPKATKEWTEFFTQQGITVLAIDSKSGKGNKKLV----STVERLSKPIIDRWVAKG 119
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
S ++ ++LGIPNVGKS L NSL A K G T+ +KI
Sbjct: 120 IRSRSIRTIILGIPNVGKSTLINSLAGSAATRTANKA-----------GHTRGQQWVKIG 168
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSF 234
N+ +LDTPG+L P++ D ++LA+TGAI D
Sbjct: 169 K--NMELLDTPGVLWPKLEDQRAAARLAMTGAISDDV 203
>gi|160947173|ref|ZP_02094340.1| hypothetical protein PEPMIC_01106 [Parvimonas micra ATCC 33270]
gi|158446307|gb|EDP23302.1| ribosome biogenesis GTP-binding protein YlqF [Parvimonas micra ATCC
33270]
Length = 293
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 124/238 (52%), Gaps = 37/238 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM I + LVDI+ E+ D+RIP SS+ D + P RI++LNK
Sbjct: 5 WYPGHMKKTMDNIRSSLKLVDIVGEIIDSRIPISSKNPVIDDVLKDKP-----RIMILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNS-HNK--DNV----KEFL--KFLQAHVRNLRKS 134
D+A + K+W++++ ++ + V++ H+K D + KE L KF + +NL
Sbjct: 60 SDMADENETKKWLSYYRKKGYGAVVVDALHSKGLDKIYSVAKEMLADKFKKLEEKNL--- 116
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
S+ T+ +M++GIPNVGKS NS+ K + A + +PG TK + +
Sbjct: 117 ----SAKTIRMMIVGIPNVGKSTFINSI-----------SKRKSAKIGDRPGVTKQVQWI 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSD 252
K + ++ +LDTPG+L P+ D + LA TGAI D + + LA F+ LN D
Sbjct: 162 K--TKNDLELLDTPGVLWPKFEDERIGLHLAFTGAIKDEIMDIENLAFRFIDELNKRD 217
>gi|311068126|ref|YP_003973049.1| ribosomal biogenesis GTPase [Bacillus atrophaeus 1942]
gi|419823894|ref|ZP_14347427.1| GTPase YlqF [Bacillus atrophaeus C89]
gi|310868643|gb|ADP32118.1| ribosomal biogenesis GTPase [Bacillus atrophaeus 1942]
gi|388471931|gb|EIM08721.1| GTPase YlqF [Bacillus atrophaeus C89]
Length = 281
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 125/248 (50%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+DI+ E+ DARIP SS +++ + P RI++LNK
Sbjct: 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEEILKNKP-----RIMLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDAS 139
D A K+W F++Q PS ++S N + + + + LQ + ++
Sbjct: 60 ADKADAAVTKQWKEHFEKQGIPSLSIDSVNGQGLNQIVPSSKELLQEKID--KRKAKGVK 117
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 118 PRAIRALIIGIPNVGKSTLINRL-----------AKKNIAKTGDRPGITISQQWVKVGKE 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKW 257
+ +LDTPGIL P+ D V +LA+TGAI DS + +++A + L L + D K+
Sbjct: 167 --LELLDTPGILWPKFEDELVGLRLAITGAIKDSIINLQDVAVFGLRFLEEHYPDRLKE- 223
Query: 258 AKFSINQI 265
++ + +I
Sbjct: 224 -RYGLEEI 230
>gi|401680005|ref|ZP_10811929.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp. ACP1]
gi|400219132|gb|EJO50003.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp. ACP1]
Length = 301
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 108/217 (49%), Gaps = 31/217 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA ATR I + + VD+++E+ DARIP SS +L P I++LNK
Sbjct: 9 WFPGHMAKATRMITEYIKKVDVVIELLDARIPRSSANPVILELVGQKPH-----IVLLNK 63
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
+DLA P KEW FF QQ ++S + K+ + + V L K D
Sbjct: 64 VDLADPKATKEWTEFFTQQGITVLAIDSKSGKGNKKLV----STVERLSKPIIDRWVAKG 119
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
S ++ ++LGIPNVGKS L NSL A K G T+ +KI
Sbjct: 120 IRSRSIRTIILGIPNVGKSTLINSLAGSAATRTANKA-----------GHTRGQQWVKIG 168
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSF 234
N+ +LDTPG+L P++ D ++LA+TGAI D
Sbjct: 169 K--NMELLDTPGVLWPKLEDQRAAARLAMTGAISDDV 203
>gi|58337275|ref|YP_193860.1| GTP binding protein [Lactobacillus acidophilus NCFM]
gi|227903861|ref|ZP_04021666.1| GTP-binding protein [Lactobacillus acidophilus ATCC 4796]
gi|58254592|gb|AAV42829.1| GTP binding protein [Lactobacillus acidophilus NCFM]
gi|227868252|gb|EEJ75673.1| GTP-binding protein [Lactobacillus acidophilus ATCC 4796]
Length = 284
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 123/242 (50%), Gaps = 28/242 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + D++ L+D+++EV DARIP SS ++L + P I++LNK
Sbjct: 6 WYPGHMNKARNQLEDKLNLIDVLVEVLDARIPESSRNPMIEELVGNKP-----HIIILNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDASSD 141
DLA P K+W F + ++S + N+++ + ++ A + + AS+
Sbjct: 61 ADLADPILTKKWAEKFSGPDKYVLALDSLHNTNMQKLISLVKKAASDKTKKLEARGASNP 120
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
T+ + L GIPN GKS + N L +GR A V +PG TK LK ++ N
Sbjct: 121 TIRIALAGIPNCGKSTIINRL--VGR---------NVAEVGNKPGVTKGQRWLKTSA--N 167
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY--KKWAK 259
I VLDTPGIL P+ D V KLA GAI DS ++A Y L L EY K K
Sbjct: 168 IQVLDTPGILWPKFSDQTVGYKLAAFGAIKDSIFHADDVALYVLERLR---EYYLKDLIK 224
Query: 260 FS 261
FS
Sbjct: 225 FS 226
>gi|385812304|ref|YP_005848695.1| GTP-binding protein [Lactobacillus fermentum CECT 5716]
gi|299783201|gb|ADJ41199.1| GTP-binding protein [Lactobacillus fermentum CECT 5716]
Length = 290
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 113/228 (49%), Gaps = 23/228 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R I ++MPLVDI+ E+ DAR+P+S+ E D++ P R+L++ K
Sbjct: 6 WFPGHMAKALRQIKEQMPLVDIVFELVDARVPYSTQNPEIDRMAGDKP-----RLLIMTK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDY--DASSD 141
DLA PT WI +F+Q P ++S K+ Q +++ ++
Sbjct: 61 TDLADPTTTAHWIDYFEQNGQPVLALDSRAHQVAKQVTVKAQQILKDQLAAERAKGMQKR 120
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M +G+PNVGKS L N H + + AA + PG T L+ S +
Sbjct: 121 AIRAMCVGVPNVGKSTLLN--HLVKKNVAATGNR---------PGVTTGQQWLR--SSAD 167
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ +LDTPG+L P+ LAL+GAI DS ++A + L L
Sbjct: 168 LELLDTPGVLWPKFATQTQAKMLALSGAIKDSLYPKDDVAIFALDYLR 215
>gi|212557323|gb|ACJ29777.1| GTP-binding protein [Shewanella piezotolerans WP3]
Length = 312
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 121/230 (52%), Gaps = 35/230 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRR-----ILVL 81
WY HM A + IA+ MP VD+++EV DARIP+SSE +P SS R I +L
Sbjct: 5 WYPGHMHKAQKEIAEVMPQVDLVIEVLDARIPYSSE-------NPMVSSLRGDKPCIKLL 57
Query: 82 NKMDLASPTQFKEWITFFDQ-QNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASS 140
NK DLA P ++WI + +Q Q + + + VK+ + V + K + D
Sbjct: 58 NKSDLADPIVTQQWIEYLEQEQGVKAMAITTLQAAQVKKIPDLCRKFVPSRDKIEKD--- 114
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ M++GIPNVGKS + N+L GR T A+ G +P TK +I
Sbjct: 115 --IRTMIMGIPNVGKSTIINTLA--GR-TIAKTGN--------EPAVTKT--QQRINLRN 159
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKEL----AQYFLG 246
I + DTPGIL P++ + + +LA+TGAI D+ + +++ A+YFL
Sbjct: 160 GIVLSDTPGILWPKVDNDKSSYRLAITGAIKDTAMDYEDVAIFAAEYFLA 209
>gi|374337964|ref|YP_005094673.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
macedonicus ACA-DC 198]
gi|372284073|emb|CCF02315.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
macedonicus ACA-DC 198]
Length = 284
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 120/232 (51%), Gaps = 24/232 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A + KEW +F++Q + VNS + VK + K L A + LR + +T
Sbjct: 64 ADSNRTKEWRNYFEKQGIKTLAVNSKEQATVKLVTDAAKSLMADKIAKLR--ERGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + GI NF +Y
Sbjct: 169 EILDTPGILWPKFEDEVVGLKLALTGAIKDQLLPMDEVTIF--GI-NFFKKY 217
>gi|158320502|ref|YP_001513009.1| GTP-binding protein HSR1-related [Alkaliphilus oremlandii OhILAs]
gi|158140701|gb|ABW19013.1| GTP-binding protein HSR1-related [Alkaliphilus oremlandii OhILAs]
Length = 280
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 31/231 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM I +++ LVDI+ E+ DARIP SS + DQ+ P ++++LNK
Sbjct: 5 WYPGHMKKTKELIREQLKLVDIVYELLDARIPISSRNPDVDQIIGDKP-----KVIILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
+DLA P +W+ +F + + +N+ + +++ + + + K DA
Sbjct: 60 IDLADPRATAKWVEYFKRNSITVIPINTITGEGIRQLAEESERAI----KDKMDALIKKG 115
Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+M++GIPNVGKS+L N L GR + +PG TK +++
Sbjct: 116 RRPRPARIMIVGIPNVGKSSLINKLA--GR---------KSTQTGDRPGVTKSKQWIRLK 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
N+ +LDTPGIL P+ D EV LA +GAI D + + LA L IL
Sbjct: 165 G--NMELLDTPGILWPKFEDEEVALNLAFSGAIKDEIMDTETLAYKLLEIL 213
>gi|75832123|ref|NP_001020498.2| mitochondrial GTPase 1 [Bos taurus]
gi|134034173|sp|Q4PS77.2|MTG1_BOVIN RecName: Full=Mitochondrial GTPase 1; Flags: Precursor
gi|74268183|gb|AAI03283.1| Mitochondrial GTPase 1 homolog (S. cerevisiae) [Bos taurus]
Length = 332
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 116/231 (50%), Gaps = 23/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA + + + LVD I+EV DA+IP S F + P +LVLNK
Sbjct: 30 WFPGHMAKGLKKMQSSLRLVDCIIEVHDAQIPLSGRNPLFQETLGLKPH-----LLVLNK 84
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYD---AS 139
MDLA + ++ I +++ + KD NVK+ + V L S Y
Sbjct: 85 MDLADLKEQQKIIQHLEREGIKHVVFTNCVKDENVKQVI----PTVTELVGSSYRYHRGE 140
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIAS 198
+M++G+PNVGKS+L NSL R KGK V +PG T+ + S +++
Sbjct: 141 HVEYCIMVIGVPNVGKSSLINSL----RRQHLRKGK--ATRVGGEPGITRAVMSRIQVCE 194
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
P +++LDTPG+L P I VE KLAL G + D VG + LA + L LN
Sbjct: 195 RPLMFLLDTPGVLAPRIPSVETGLKLALCGTVLDHLVGEETLADFLLYTLN 245
>gi|25011102|ref|NP_735497.1| ribosomal biogenesis GTPase [Streptococcus agalactiae NEM316]
gi|76798265|ref|ZP_00780513.1| GTP-binding protein [Streptococcus agalactiae 18RS21]
gi|77410513|ref|ZP_00786874.1| GTP-binding protein [Streptococcus agalactiae CJB111]
gi|77413767|ref|ZP_00789948.1| GTP-binding protein [Streptococcus agalactiae 515]
gi|23095501|emb|CAD46707.1| Unknown [Streptococcus agalactiae NEM316]
gi|76586376|gb|EAO62886.1| GTP-binding protein [Streptococcus agalactiae 18RS21]
gi|77160196|gb|EAO71326.1| GTP-binding protein [Streptococcus agalactiae 515]
gi|77163461|gb|EAO74411.1| GTP-binding protein [Streptococcus agalactiae CJB111]
Length = 283
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 118/244 (48%), Gaps = 23/244 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A P + KEW F++ Q + +NS + VK + K L + + LR +T
Sbjct: 64 ADPIRTKEWRDFYESQGLKTLAINSKEQSTVKKVTDIAKILMSDKIAKLRGR--GIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262
+LDTPGIL P+ D V KLALTGAI D + E+ G+ F Y K
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVT--IFGLNYFKTYYPDRLKERF 226
Query: 263 NQIN 266
IN
Sbjct: 227 KSIN 230
>gi|261408013|ref|YP_003244254.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
Y412MC10]
gi|261284476|gb|ACX66447.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
Y412MC10]
Length = 288
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 125/244 (51%), Gaps = 34/244 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A R I +++ L+D ++E+ DAR+P SS D++ P R++++NK
Sbjct: 5 WFPGHMTKARRQIQEKLKLIDAVIELIDARLPLSSRNPMIDEILQGKP-----RLVIMNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
DLA P ++W +F + +F V++ VK+ + ++ L K D
Sbjct: 60 ADLADPEVTRQWQAYFKEAGLTAFPVDASTGTGVKD----IPNQIKLLLKEKIDKQIAKG 115
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ + V+++GIPNVGKS L N L GR AE G +PG TK +K+A
Sbjct: 116 MNPRAMRVLIVGIPNVGKSTLINRLA--GR-NIAETGD--------RPGVTKGQQWIKVA 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA+TGAI + + +++A F I F++ Y W
Sbjct: 165 GG-EMELLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNVEDIA--FFAIKYFANYY--W 219
Query: 258 AKFS 261
S
Sbjct: 220 ETMS 223
>gi|399047108|ref|ZP_10739240.1| ribosome biogenesis GTP-binding protein YlqF [Brevibacillus sp.
CF112]
gi|433546085|ref|ZP_20502423.1| ribosome biogenesis GTPase [Brevibacillus agri BAB-2500]
gi|398054941|gb|EJL47039.1| ribosome biogenesis GTP-binding protein YlqF [Brevibacillus sp.
CF112]
gi|432182701|gb|ELK40264.1| ribosome biogenesis GTPase [Brevibacillus agri BAB-2500]
Length = 297
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 117/224 (52%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ + P R+++LNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELLDARLPLSSRNPMIDEIVSDKP-----RLILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
DLA +EWI +F ++ + +++ + V + + + ++ ++S+
Sbjct: 60 ADLADEKATEEWIAYFRKEGIRTLPIDALSGKGVNKLPELCKELAADMLAKRSERGMQGR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ +M+LGIPNVGKS+L N L K A +P TK +K+
Sbjct: 120 AIRIMILGIPNVGKSSLINRLS-----------KRSVAATGDRPAVTKAQQWVKMGD--T 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D V +LA +GAI D + E+A + +
Sbjct: 167 LELLDTPGILWPKFEDQMVGLRLAASGAIKDELIDFTEVALFVI 210
>gi|139473751|ref|YP_001128467.1| ribosomal biogenesis GTPase [Streptococcus pyogenes str. Manfredo]
gi|134271998|emb|CAM30236.1| putative GTPase protein [Streptococcus pyogenes str. Manfredo]
Length = 282
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 115/223 (51%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENVKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A T+ KEW +++ Q + +NS + VK E K L A ++ LR + +T
Sbjct: 64 ADATRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEAAKELMADKLQRLR--ERGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D V KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|20807903|ref|NP_623074.1| GTPase [Thermoanaerobacter tengcongensis MB4]
gi|20516470|gb|AAM24678.1| predicted GTPases [Thermoanaerobacter tengcongensis MB4]
Length = 277
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 117/226 (51%), Gaps = 23/226 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HMA A + I + LVD++ E+ DARIP SS +FD++ ++I++LNK
Sbjct: 4 WYPGHMAKAKKEIISNLKLVDVVYEIVDARIPRSSRNPDFDEITKR-----KKKIMLLNK 58
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS-SDT 142
DLA WI F ++ + VN+ KE + + +++ ++ +
Sbjct: 59 EDLADERITDLWIKHFKEKGIEAVKVNAITGKGFKELEEKTKEVCKDILEAKVKKGLTPR 118
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M+LGIPNVGKS N+L IGR + A +PG TK ++ ++ P +
Sbjct: 119 LRGMILGIPNVGKSTFINTL--IGR---------KKAKTGDKPGVTKSLHWIR---TPYL 164
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+LDTPG+L P+ D LA+TGAI D + +E+A + + IL
Sbjct: 165 DLLDTPGVLWPKFEDKTTGFMLAITGAIKDEILEMEEVALFLVSIL 210
>gi|150390502|ref|YP_001320551.1| HSR1-like GTP-binding protein [Alkaliphilus metalliredigens QYMF]
gi|149950364|gb|ABR48892.1| GTP-binding protein, HSR1-related [Alkaliphilus metalliredigens
QYMF]
Length = 285
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 109/219 (49%), Gaps = 21/219 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM + D++ LVD++ E+ DARIP SS + + + R+++LNK DL
Sbjct: 7 WYPGHMKKTKELLKDQLKLVDVVYELLDARIPISSRNPSI--NEIIGNKPRVIILNKFDL 64
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDY----DASSDT 142
A W+ +F Q + VN N +KE ++ Q + K D
Sbjct: 65 ADQEVTNRWVKYFKAQGIEAIPVNCLNSKGLKEAIEEGQKMFQE--KKDLMIKKGRKERP 122
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ +M++GIPNVGKS++ N L GR + A +PG TK +++ N+
Sbjct: 123 IRIMMVGIPNVGKSSIINQLA--GR---------KSARTGDKPGVTKAKQWIRLKG--NM 169
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELA 241
+LDTPGIL P+ D V KLA TGAI D + ++LA
Sbjct: 170 ELLDTPGILWPKFEDQNVALKLAFTGAIKDEIMDVEDLA 208
>gi|340398716|ref|YP_004727741.1| GTP-binding protein [Streptococcus salivarius CCHSS3]
gi|338742709|emb|CCB93214.1| GTP-binding protein [Streptococcus salivarius CCHSS3]
Length = 284
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 113/223 (50%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASSDT 142
A + KEW ++F+ Q + +NS + VK + ++ LR + +T
Sbjct: 64 ADSNRTKEWRSYFESQGIKTLAINSKEQSTVKLVTDAAKSLMTDKIQRLR--ERGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D V KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|312862638|ref|ZP_07722878.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
vestibularis F0396]
gi|311101498|gb|EFQ59701.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
vestibularis F0396]
Length = 284
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 113/223 (50%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASSDT 142
A + KEW ++F+ Q + +NS + VK + ++ LR+ +T
Sbjct: 64 ADSNRTKEWRSYFETQGIKTLAINSKEQSTVKLVTDAAKSLMDDKIQRLRER--GIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D V KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|182416692|ref|ZP_02948093.1| GTP-binding protein [Clostridium butyricum 5521]
gi|237667586|ref|ZP_04527570.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium butyricum
E4 str. BoNT E BL5262]
gi|182379454|gb|EDT76947.1| GTP-binding protein [Clostridium butyricum 5521]
gi|237655934|gb|EEP53490.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium butyricum
E4 str. BoNT E BL5262]
Length = 293
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 121/248 (48%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HM R I + + LVD ++E+RDARIP SS + D+L P RI++LNK
Sbjct: 5 WFPGHMRKTQREIKENLKLVDAVIEIRDARIPRSSANPDIDKLLEGKP-----RIILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD-----A 138
DL KEWI + N VN E LK ++ + NL K +D
Sbjct: 60 SDLTDSKVTKEWIDYLTNDNVKVLEVNCLK----GEGLKAIKPALLNLLKEKHDRLKAKG 115
Query: 139 SSDTVT-VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ +T VM++GIPNVGKS N ++ R A+ G +PG TK +K A
Sbjct: 116 MAKIITRVMVVGIPNVGKSTFIN---KMARNNIAKTG--------DRPGVTKSKQWIKTA 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
I +LDTPG+L P+ D LA TGAI D + +ELA + L + E K
Sbjct: 165 I--GIELLDTPGVLWPKFEDDTTALNLAFTGAIKDEIMDIEELALKLVERLQKNYETKLK 222
Query: 258 AKFSINQI 265
++ +++I
Sbjct: 223 ERYKLSEI 230
>gi|329924289|ref|ZP_08279444.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
HGF5]
gi|328940771|gb|EGG37086.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
HGF5]
Length = 288
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 125/244 (51%), Gaps = 34/244 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A R I +++ L+D ++E+ DAR+P SS D++ P R++++NK
Sbjct: 5 WFPGHMTKARRQIQEKLKLIDAVIELIDARLPLSSRNPMIDEILQGKP-----RLVIMNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
DLA P ++W +F + +F V++ VK+ + ++ L K D
Sbjct: 60 ADLADPEVTRQWQAYFKEGGLTAFPVDASTGTGVKD----IPNQIKLLLKEKIDKQIAKG 115
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ + V+++GIPNVGKS L N L GR AE G +PG TK +K+A
Sbjct: 116 MNPRAMRVLIVGIPNVGKSTLINRLA--GR-NIAETGD--------RPGVTKGQQWIKVA 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ +LDTPGIL P+ D V +LA+TGAI + + +++A F I F++ Y W
Sbjct: 165 GG-EMELLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNVEDIA--FFAIKYFANYY--W 219
Query: 258 AKFS 261
S
Sbjct: 220 ETMS 223
>gi|340755132|ref|ZP_08691834.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
D12]
gi|313686144|gb|EFS22979.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
D12]
Length = 298
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 115/225 (51%), Gaps = 23/225 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPF--SSSRRILVLNKM 84
WY HM I + MPL+D++LE+ DARIP SS+ + P + +RI+VLNK
Sbjct: 10 WYPGHMKKTKDLIKENMPLIDVVLEIVDARIPISSKNPDI----PMFAKNKKRIVVLNKS 65
Query: 85 DLASPTQFKEWITFFDQQNCPS--FGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DL ++ W +F QQ +++ NVK+ + + ++ Y
Sbjct: 66 DLVEKSELSRWKEYFLQQEKADAVVEISAETGYNVKQLYACIDKVSKEKKEKLYAKGLKK 125
Query: 143 VT--VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
V +M+LGIPNVGKS L N + +G+ +A V +PG TK +K+
Sbjct: 126 VNIRIMVLGIPNVGKSRLINRI--VGKNSAG---------VGNKPGFTKGKQWVKLKD-- 172
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ + EV LA+TGAI D + +E+A FL
Sbjct: 173 GLELLDTPGILWPKFENREVGFHLAMTGAIKDEILPLEEVACTFL 217
>gi|23273479|gb|AAH35721.1| Mitochondrial GTPase 1 homolog (S. cerevisiae) [Homo sapiens]
gi|158258467|dbj|BAF85204.1| unnamed protein product [Homo sapiens]
Length = 300
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 118/227 (51%), Gaps = 25/227 (11%)
Query: 32 MAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNKMDLAS 88
MA + + + LVD I+EV DARIP S F + P +LVLNKMDLA
Sbjct: 1 MAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKP-----HLLVLNKMDLAD 55
Query: 89 PTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHV----RNLRKSDYDASSDTV 143
T+ ++ + + + + + KD NVK+ + + + R RK + +
Sbjct: 56 LTEQQKIMQHLEGEGLKNVIFTNCVKDENVKQIIPMVTELIGRSHRYHRKENLEYC---- 111
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNI 202
+M++G+PNVGKS+L NSL R KGK V +PG T+ + S ++++ P +
Sbjct: 112 -IMVIGVPNVGKSSLINSL----RRQHLRKGK--ATRVGGEPGITRAVMSKIQVSERPLM 164
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
++LDTPG+L P I VE KLAL G + D VG + +A Y L LN
Sbjct: 165 FLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 211
>gi|387761208|ref|YP_006068185.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
salivarius 57.I]
gi|339291975|gb|AEJ53322.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
salivarius 57.I]
Length = 284
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 113/223 (50%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASSDT 142
A + KEW ++F+ Q + +NS + VK + ++ LR + +T
Sbjct: 64 ADSNRTKEWRSYFESQGIKTLAINSKEQSTVKLVTDAAKSLMTDKIQRLR--ERGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D V KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|121533788|ref|ZP_01665615.1| GTP-binding protein, HSR1-related [Thermosinus carboxydivorans
Nor1]
gi|121307779|gb|EAX48694.1| GTP-binding protein, HSR1-related [Thermosinus carboxydivorans
Nor1]
Length = 287
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 114/225 (50%), Gaps = 17/225 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A + I + + LVD+++E+ DARIP SS + H + R++ LNK DL
Sbjct: 5 WFPGHMAKAYKMIREHLKLVDVVIELLDARIPLSSANPVI--HELVGNKPRVIALNKADL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKS--DYDASSDTVT 144
A P + WI + +Q + + + + VK + ++ VR K+ TV
Sbjct: 63 AEPQWTERWIAEYRRQGLAAVPLEAVSGKGVKTLIVQVETAVRPKLKALEAKGIQGRTVR 122
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
++LGIPNVGKS+L N L + ++ PG T+ +KI N+ +
Sbjct: 123 AIILGIPNVGKSSLINRLLGAAVVRTGDR-----------PGVTRGQQWIKIGK--NLEL 169
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
LDTPG+L P+ D EV KLA+TGAI + + +A L +L
Sbjct: 170 LDTPGVLWPKFDDQEVAFKLAITGAIHEDVYDVEAVATKLLHMLR 214
>gi|406658358|ref|ZP_11066498.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus iniae
9117]
gi|405578573|gb|EKB52687.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus iniae
9117]
Length = 284
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 115/223 (51%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A ++ +EW F++ Q + +NS + VK E K L A ++ LR D +T
Sbjct: 64 ADKSRTQEWRRFYESQGIKTLAINSKEQSTVKKVTEAAKELMADKIQKLR--DRGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D V KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWPKFEDQLVGLKLALTGAIKDQLLPLDEVTIFGL 211
>gi|375085143|ref|ZP_09731852.1| ribosome biogenesis GTP-binding protein YlqF [Megamonas funiformis
YIT 11815]
gi|374567559|gb|EHR38772.1| ribosome biogenesis GTP-binding protein YlqF [Megamonas funiformis
YIT 11815]
Length = 293
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 120/243 (49%), Gaps = 21/243 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R I + + LVD+++E+RDARIP SS L++ ++ LNK+DL
Sbjct: 18 WFPGHMAKAKRIIVENLKLVDVVIELRDARIPNSSANPILKDL--IGKKPHLIALNKIDL 75
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDASSDTVT 144
A +W +F +NS + +++ + A V+ + ++
Sbjct: 76 ADNNINNKWEEYFTSMGKSVVKINSLDGKGIRQLVTVADELAKVKTAKFANKGVKPRNAR 135
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
VM++GIPNVGKS+L N L + A+K PG T+ +KI + N+ +
Sbjct: 136 VMIVGIPNVGKSSLINRLSGSASLKTADK-----------PGVTRAKQWIKIKN--NLDL 182
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAK--FSI 262
LDTPGIL P+ D EV LA TGAI D + A+ L D+Y K K + I
Sbjct: 183 LDTPGILWPKFEDPEVGLNLAFTGAISDEVYDIERAAEILL--WRLKDDYAKNIKERYKI 240
Query: 263 NQI 265
++I
Sbjct: 241 DEI 243
>gi|309805733|ref|ZP_07699773.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 09V1-c]
gi|309806753|ref|ZP_07700747.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 03V1-b]
gi|309807512|ref|ZP_07701469.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 01V1-a]
gi|312873986|ref|ZP_07734022.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 2052A-d]
gi|312875498|ref|ZP_07735501.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 2053A-b]
gi|325912835|ref|ZP_08175213.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
UPII 60-B]
gi|349611413|ref|ZP_08890649.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus sp.
7_1_47FAA]
gi|308164986|gb|EFO67229.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 09V1-c]
gi|308166868|gb|EFO69053.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 03V1-b]
gi|308169239|gb|EFO71300.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 01V1-a]
gi|311089009|gb|EFQ47450.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 2053A-b]
gi|311090535|gb|EFQ48943.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 2052A-d]
gi|325477828|gb|EGC80962.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
UPII 60-B]
gi|348608735|gb|EGY58705.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus sp.
7_1_47FAA]
Length = 279
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 122/247 (49%), Gaps = 23/247 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A + D++ L+D+I+EV DAR+P SS+ + ++ I++LNK DL
Sbjct: 6 WYPGHMNKAKNQLEDKLDLIDVIIEVLDARLPMSSKNPMI--SKLIANKAHIIILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD----YDASSDT 142
A + K W+ FF +Q +++ + +N+ +K ++ ++ K D A
Sbjct: 64 ADAIKTKAWVKFFQKQGILVLPMDAQHSNNMSGLIKLIKIATKD--KVDKIIAKGAKEPV 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ V + GIPN GKS + N L +GR V +PG T+ LK + NI
Sbjct: 122 IKVAIAGIPNCGKSTIINRL--VGR---------NATIVGDKPGVTRGQNWLK--TDTNI 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKKWAKF 260
+LDTPGIL P+ D + KLA GAI DS +++ + L L + D + K
Sbjct: 169 QILDTPGILWPKFDDRNIGLKLAACGAIKDSVFHADDVSIFVLKYLREQYLDLLVDFCKT 228
Query: 261 SINQINK 267
S +I K
Sbjct: 229 SAEKIEK 235
>gi|404418476|ref|ZP_11000243.1| GTPase YlqF [Staphylococcus arlettae CVD059]
gi|403489069|gb|EJY94647.1| GTPase YlqF [Staphylococcus arlettae CVD059]
Length = 290
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 116/231 (50%), Gaps = 23/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R + +++ VD++ E+ DARIP+SS D++ P R+++LNK
Sbjct: 5 WYPGHMAKAKRQVTEQLKKVDVVFELVDARIPYSSRNPMIDEVIQQKP-----RVIILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKF-LQAHVRNLRKS-DYDASSD 141
D+A+ + ++W ++F Q V++ + +K+ + +QA K +
Sbjct: 60 KDMANLKELEKWQSYFSAQGNFPVAVDAKHGKGLKQVEQAAIQATEDKFAKEREKGLKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS L N L A PG TK +KI +
Sbjct: 120 AIRAMIVGIPNVGKSTLINKL-----------ANRAIAKTGNTPGVTKQQQWIKIGK--S 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSD 252
+ +LDTPGIL P+ D V KL++TGAI DS V E+A Y L L D
Sbjct: 167 LQLLDTPGILWPKFEDQLVGKKLSITGAIKDSIVHLDEVAIYGLEFLKQHD 217
>gi|343520555|ref|ZP_08757524.1| ribosome biogenesis GTP-binding protein YlqF [Parvimonas sp. oral
taxon 393 str. F0440]
gi|343397513|gb|EGV10047.1| ribosome biogenesis GTP-binding protein YlqF [Parvimonas sp. oral
taxon 393 str. F0440]
Length = 293
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 124/238 (52%), Gaps = 37/238 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM I + LVDI+ E+ D+RIP SS+ D + P RI++LNK
Sbjct: 5 WYPGHMKKTMDNIRASLKLVDIVGEIIDSRIPISSKNPVIDDVLKDKP-----RIMILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNS-HNK--DNV----KEFL--KFLQAHVRNLRKS 134
D+A + K+W++++ ++ + V++ H+K D + KE L KF + +NL
Sbjct: 60 SDMADENETKKWLSYYRKKGYGAVVVDALHSKGLDKIYSVAKEMLADKFKKLEEKNL--- 116
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
S+ T+ +M++GIPNVGKS NS+ K + A + +PG TK + +
Sbjct: 117 ----SAKTIRMMIVGIPNVGKSTFINSI-----------SKRKSAKIGDRPGVTKQVQWI 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSD 252
K + ++ +LDTPG+L P+ D + LA TGAI D + + LA F+ LN D
Sbjct: 162 K--TKNDLELLDTPGVLWPKFEDERIGLHLAFTGAIKDEIMDIENLAFRFIDELNKRD 217
>gi|443323009|ref|ZP_21052021.1| ribosome biogenesis GTP-binding protein YlqF [Gloeocapsa sp. PCC
73106]
gi|442787313|gb|ELR97034.1| ribosome biogenesis GTP-binding protein YlqF [Gloeocapsa sp. PCC
73106]
Length = 278
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 118/224 (52%), Gaps = 17/224 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H+A A RA+ +++ VD++LEVRDARIP +S QLR + R+L++N++D+
Sbjct: 6 WYPGHIAKAERALKEQLKRVDLVLEVRDARIPLASHHPQLRAW--IGTKPRLLIINRLDM 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDASSDTVT 144
S ++W+ +F Q + ++H +K K Q N ++ D V
Sbjct: 64 ISQQMRQQWLNWFRHQGEEPYFTDAHEGIGIKAVTKAAQLVGVTVNEKRRDRGLLPRPVR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
+++G PNVGKSAL N L + +A + PG T+ + ++I+ +I +
Sbjct: 124 AVVIGFPNVGKSALINRLLGKKIVPSARR-----------PGVTRQLRWVRISE--DIEL 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
LD PG++P ++ + E KLA+ IG++ + +A F+ +L
Sbjct: 171 LDAPGVIPVKLENQENAIKLAICEDIGEAAYDSQLIASAFIDLL 214
>gi|306833476|ref|ZP_07466603.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus bovis
ATCC 700338]
gi|336064249|ref|YP_004559108.1| ribosomal biogenesis GTPase [Streptococcus pasteurianus ATCC 43144]
gi|304424246|gb|EFM27385.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus bovis
ATCC 700338]
gi|334282449|dbj|BAK30022.1| ribosomal biogenesis GTPase [Streptococcus pasteurianus ATCC 43144]
Length = 284
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 119/232 (51%), Gaps = 24/232 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A + KEW +F++Q + VNS + VK + K L A + LR + +T
Sbjct: 64 ADSNRTKEWRNYFEKQGIKTLAVNSKEQATVKLVTDAAKSLMADKLAKLR--ERGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + LNF +Y
Sbjct: 169 EILDTPGILWPKFEDEIVGLKLALTGAIKDQLLPMDEVTIFG---LNFFKKY 217
>gi|410727082|ref|ZP_11365305.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
Maddingley MBC34-26]
gi|410599417|gb|EKQ53970.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
Maddingley MBC34-26]
Length = 287
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 121/248 (48%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HM R I + + LVD ++E+RDARIP SS + ++L P RI++LNK
Sbjct: 5 WFPGHMKKTQREIKENLKLVDAVIEIRDARIPRSSANPDIEKLLEGKP-----RIILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
DL KEWI + + + VN D LK ++ + L K +D
Sbjct: 60 SDLTDSKVTKEWINYLTEDDVKVLEVNCLKGDG----LKNIKPTLLTLLKEKHDRLKAKG 115
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ T+ VM++GIPNVGKS N ++ R A+ G +PG TK +K
Sbjct: 116 MVNITMRVMVVGIPNVGKSTFIN---KMARNNIAKTGD--------RPGVTKSKQWIK-- 162
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ I +LDTPG+L P+ D E LA TGAI D + +ELA + L S E K
Sbjct: 163 TGIGIEMLDTPGVLWPKFEDDETALNLAFTGAIKDEIMDIEELALKLVERLQNSYEEKLK 222
Query: 258 AKFSINQI 265
++ + ++
Sbjct: 223 ERYKLTEV 230
>gi|421499461|ref|ZP_15946503.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
necrophorum subsp. funduliforme Fnf 1007]
gi|402269611|gb|EJU18937.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
necrophorum subsp. funduliforme Fnf 1007]
Length = 296
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 115/225 (51%), Gaps = 23/225 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPF--SSSRRILVLNKM 84
WY HM I + MPL+D++LE+ DARIP SS+ + P + +RI+VLNK
Sbjct: 8 WYPGHMKKTKDLIKENMPLIDVVLEIVDARIPISSKNPDI----PMFAKNKKRIVVLNKS 63
Query: 85 DLASPTQFKEWITFFDQQNCPS--FGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DL ++ W +F QQ +++ NVK+ + + ++ Y
Sbjct: 64 DLVEKSELSRWKEYFLQQEKADAVVEISAETGYNVKQLYACIDKVSKEKKEKLYAKGLKK 123
Query: 143 VT--VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
V +M+LGIPNVGKS L N + +G+ +A V +PG TK +K+
Sbjct: 124 VNIRIMVLGIPNVGKSRLINRI--VGKNSAG---------VGNKPGFTKGKQWVKLKD-- 170
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ + EV LA+TGAI D + +E+A FL
Sbjct: 171 GLELLDTPGILWPKFENREVGFHLAMTGAIKDEILPLEEVACTFL 215
>gi|331002665|ref|ZP_08326180.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae oral
taxon 107 str. F0167]
gi|330407078|gb|EGG86582.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae oral
taxon 107 str. F0167]
Length = 280
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 112/225 (49%), Gaps = 21/225 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A RA++D + LVDII+E+ DAR P ++ ++ ++ RI++LNK DL
Sbjct: 5 WYPGHMTKAKRAMSDAIKLVDIIIEMTDARAPEATRNPEI--MELGAAKSRIIILNKADL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD--ASSDTVT 144
A W ++ +Q ++S K+ V +K ++ + R+ D + V
Sbjct: 63 ADENANNRWANYYKEQGYECMFMDSRKKNGVNALIKAIENVSKEKRERDAKRGIKNRPVR 122
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M+ GIPNVGKS L NS+ GR A K PG TK +K+ + +
Sbjct: 123 AMVAGIPNVGKSTLINSVS--GRAMAKTGNK---------PGVTKGNQWIKLKGQ--VEL 169
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVG----GKELAQYFL 245
LDTPGIL P+ D V +A G+I D + G EL ++F+
Sbjct: 170 LDTPGILWPKFEDENVGEMIAFIGSINDMIIDIRELGLELIKWFI 214
>gi|163791098|ref|ZP_02185518.1| hypothetical protein CAT7_11800 [Carnobacterium sp. AT7]
gi|159873654|gb|EDP67738.1| hypothetical protein CAT7_11800 [Carnobacterium sp. AT7]
Length = 284
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 117/237 (49%), Gaps = 33/237 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ LVD+I E+ DAR+P SS D++ P RI++LNK
Sbjct: 5 WFPGHMAKARRQVTEKIKLVDVIFELVDARLPLSSRNPILDEIIGEKP-----RIIILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASS--- 140
DLA P Q K+W+ +F++Q + + + +K+ ++ + + K +D +
Sbjct: 60 SDLADPVQTKKWVEYFNEQGIAAVPIVAQEGKGMKQVME----KAKEILKPKFDRRAAKG 115
Query: 141 ---DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ M +GIPNVGKS L N K A +PG TK +
Sbjct: 116 IKPRAIRAMSIGIPNVGKSTLINRFI-----------KKNVAKTGNKPGVTK--AQQWLK 162
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+ +LDTPGIL P+ D + KLALTGAI D+ + ++A Y GI + Y
Sbjct: 163 LGKELELLDTPGILWPKFEDPAIGQKLALTGAIKDTILQLDDIAMY--GIEFMRENY 217
>gi|342218751|ref|ZP_08711355.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera sp. UPII
135-E]
gi|341588879|gb|EGS32251.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera sp. UPII
135-E]
Length = 283
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 111/215 (51%), Gaps = 27/215 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA A + I + M ++D+++E+ DARIP SS + N I+VLNK DL
Sbjct: 5 WYPGHMAKAKKLIQENMKMIDVVIELVDARIPKSSTNPMIGNL--IGQKPAIIVLNKADL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ-------AHVRNLRKSDYDAS 139
A P + K+W+ ++ + + +NS ++K ++ ++ AH R+
Sbjct: 63 ADPEEVKQWLQYYRSEGRIAIPLNSKESKSIKRLIQEIRSLAEPKLAHWRS-----RGLK 117
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ +V M+LGIPNVGKS L N L GR A + +PGETK + +
Sbjct: 118 NRSVRTMILGIPNVGKSTLMNRLA--GR---------NAAKTADKPGETKGKQWVHLGDQ 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSF 234
++ LDTPG+L P++ D +LA TGAI D+
Sbjct: 167 LDL--LDTPGVLWPKLEDQVSAYRLAATGAISDTV 199
>gi|411116865|ref|ZP_11389352.1| ribosome biogenesis GTP-binding protein YlqF [Oscillatoriales
cyanobacterium JSC-12]
gi|410712968|gb|EKQ70469.1| ribosome biogenesis GTP-binding protein YlqF [Oscillatoriales
cyanobacterium JSC-12]
Length = 285
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 116/225 (51%), Gaps = 17/225 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H+A A +A+ +++ VD++LEVRDARIP ++ Q++ R+LVLN++D+
Sbjct: 8 WYPGHIAKAEKALQEQLKRVDVVLEVRDARIPLATAHPQVKQW--IGEKERVLVLNRVDM 65
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQA--HVRNLRKSDYDASSDTVT 144
++W+ +F Q F ++ + ++ K QA N R+ D V
Sbjct: 66 IPAQARQQWVEWFKAQGEEPFFTDAQHGKGIEAITKAAQAAGEKMNQRRRDRGMLPRPVR 125
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
+++G PNVGKSAL N L + + +A + G T+ + ++I+ I +
Sbjct: 126 AVVMGFPNVGKSALINRLLKRRVVDSARRA-----------GVTRSLRWIRISDQ--IEL 172
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
LD PG+LP +++D + KLA+ IG++ + +A + +L
Sbjct: 173 LDAPGVLPSKLNDQDAALKLAICDDIGEAAYDNQRVAAALVDLLK 217
>gi|320546753|ref|ZP_08041064.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus equinus
ATCC 9812]
gi|320448632|gb|EFW89364.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus equinus
ATCC 9812]
Length = 284
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 118/232 (50%), Gaps = 24/232 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A + KEW +F+ Q + VNS + VK E K L A + LR + +T
Sbjct: 64 ADSNRTKEWHKYFESQGIKTLAVNSKEQSTVKLVTEAAKSLMADKLAKLR--ERGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + LNF E+
Sbjct: 169 EILDTPGILWPKFEDEVVGLKLALTGAIKDQLLPMDEVTIFG---LNFFKEH 217
>gi|311030148|ref|ZP_07708238.1| ribosomal biogenesis GTPase [Bacillus sp. m3-13]
Length = 285
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 128/255 (50%), Gaps = 43/255 (16%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+DI+ E+ DARIP SS D++ ++ P RI++LNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDIVYELVDARIPVSSRNPMIDEIISNKP-----RIILLNK 59
Query: 84 MDLASPTQFKEWITFFD--QQNCPSFGVNSHNKDNV-------KEFL--KFLQAHVRNLR 132
D+A +EW+ +F+ + + ++S + KE L KF + R +R
Sbjct: 60 ADMADAKVTREWLDYFNLPGSSTKAIAIDSQTGKGIQQIATLSKELLKEKFDKMQSRGIR 119
Query: 133 KSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY 192
+ +++GIPNVGKS L N L K A +PG TK
Sbjct: 120 PR-------AIRALIVGIPNVGKSTLINRL-----------AKKNIAQTGDRPGVTKAQQ 161
Query: 193 SLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--F 250
+K+ + +LDTPGIL P+ D EV +LA TGAI D+ + +++A + L L +
Sbjct: 162 WVKVGKE--LELLDTPGILWPKFEDQEVGYRLATTGAIKDTIINLQDIAVFALRFLTAAY 219
Query: 251 SDEYKKWAKFSINQI 265
D K+ ++ + +I
Sbjct: 220 PDRLKE--RYGLEEI 232
>gi|373454398|ref|ZP_09546264.1| ribosome biogenesis GTP-binding protein YlqF [Dialister
succinatiphilus YIT 11850]
gi|371935673|gb|EHO63416.1| ribosome biogenesis GTP-binding protein YlqF [Dialister
succinatiphilus YIT 11850]
Length = 285
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 126/261 (48%), Gaps = 24/261 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM R I D + VD++ E+ DARIP SS ++L P RI++LNK
Sbjct: 5 WFPGHMTKTKRMIEDHLKAVDVVAELLDARIPASSANPMVEELVKGKP-----RIVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DLA P Q W++F+ ++N P ++ N N K+ L ++ + + Y +
Sbjct: 60 ADLADPRQTDRWVSFYRKRNIPVVPMSVGNGKNKKKLLSLIRETAKPILDKWYRKGLKNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+V +M+LGIPNVGKS+L N L TAA A + PG T+ ++++
Sbjct: 120 SVRLMILGIPNVGKSSLINFLAG----TAA-------ARTANTPGHTRGKQWVRLSE--G 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
+ +LDTPG+L P+ D +LA TGAI E+ L L ++ +
Sbjct: 167 LDLLDTPGVLWPKFDDQTAALRLAATGAIAGDVFNPDEVVPVLLSSLAETEPQVLKEVYH 226
Query: 262 INQINK-PLTLHHKADQSSGS 281
I+ +N+ P L A + G
Sbjct: 227 IDDVNQDPQLLLEAAGRRRGC 247
>gi|340500070|gb|EGR26973.1| ribosomal biogenesis gtpase, putative [Ichthyophthirius
multifiliis]
Length = 294
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 115/233 (49%), Gaps = 27/233 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM A R + D+ +D +E+RD+RIP SS + + F + ++I+V NK DL
Sbjct: 17 WFPGHMYRALRLMRDKQENIDYFIEIRDSRIPISSRNQEFDDLCQFYNKKKIIVFNKYDL 76
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNS---HNKDNVKE-FLKFLQAHVRNLRKSDYDASSDT 142
++ + + + F V++ N NV E LK +Q S+
Sbjct: 77 SNQRVINNLVEKYTKVGIDCFSVSALKGTNMPNVNEQILKRIQGK----------YSTVG 126
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ +M+ G+PNVGKS + N L + R + K AT P TK I +KI+ P I
Sbjct: 127 IWLMICGMPNVGKSTIINQLRTLIRQKSINKS---EAT----PCTTKSIVGVKISQDPLI 179
Query: 203 YVLDTPGILPPEIHDVEVCS------KLALTGAIGDSFVGGKELAQYFLGILN 249
Y++DTPG++ P I D EV + KL+L G I D G + + Y + +LN
Sbjct: 180 YLVDTPGVMIPNIQDDEVFTYKLKSLKLSLVGCIKDVIPGKEIILDYLVYVLN 232
>gi|259500646|ref|ZP_05743548.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
DSM 13335]
gi|315653519|ref|ZP_07906440.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
ATCC 55195]
gi|259168030|gb|EEW52525.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
DSM 13335]
gi|315489210|gb|EFU78851.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
ATCC 55195]
Length = 281
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 123/249 (49%), Gaps = 26/249 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A + D++ L+D+I+EV DAR+P SS+ + ++ I++LNK DL
Sbjct: 8 WYPGHMNKAKNQLEDKLDLIDVIIEVLDARLPMSSKNPMI--SKLIANKAHIIILNKADL 65
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD----YDASSDT 142
A + K W+ FF +Q +++ + +N+ +K ++ ++ K D A
Sbjct: 66 ADAIKTKAWVKFFQKQGILVLPMDAQHSNNMSGLIKLIKIATKD--KVDKIIAKGAKEPV 123
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ V + GIPN GKS + N L +GR V +PG T+ LK + NI
Sbjct: 124 IKVAIAGIPNCGKSTIINRL--VGR---------NATIVGDKPGVTRGQNWLK--TDTNI 170
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLG-----ILNFSDEYKKW 257
+LDTPGIL P+ D + KLA GAI DS +++ + L LN ++ K
Sbjct: 171 QILDTPGILWPKFDDRNIGLKLAACGAIKDSVFHADDVSIFVLKYLREQYLNLLVDFCKT 230
Query: 258 AKFSINQIN 266
+ I +IN
Sbjct: 231 SAEKIEKIN 239
>gi|379705261|ref|YP_005203720.1| ribosomal biogenesis GTPase [Streptococcus infantarius subsp.
infantarius CJ18]
gi|374681960|gb|AEZ62249.1| ribosomal biogenesis GTPase [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 284
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 118/232 (50%), Gaps = 24/232 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPML--TKIIGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A + KEW +F+ Q + VNS + VK E K L A + LR+ +T
Sbjct: 64 ADSNRTKEWRRYFESQGIKTLAVNSKEQATVKLVTEAAKSLMADKLAKLRERGI--QKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAIVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + LNF E+
Sbjct: 169 EILDTPGILWPKFEDEVVGLKLALTGAIKDQLLPMDEVTIFG---LNFFKEH 217
>gi|225868571|ref|YP_002744519.1| GTPase protein [Streptococcus equi subsp. zooepidemicus]
gi|225701847|emb|CAW99305.1| putative GTPase protein [Streptococcus equi subsp. zooepidemicus]
Length = 284
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 120/232 (51%), Gaps = 24/232 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMLLNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A T K+W ++++Q + +N+ + VK E K L A +R LR+ +T
Sbjct: 64 ADSTHTKKWQQYYEKQGIKTLAINAKEQATVKRVTEAAKELMADKLRRLRERG--IQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + ATV +PG TK LK S+ +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIATVGNKPGVTKGQQWLK--SNKEL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + LN+ +Y
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFG---LNYFKKY 217
>gi|392547815|ref|ZP_10294952.1| GTPase YlqF [Pseudoalteromonas rubra ATCC 29570]
Length = 317
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 123/247 (49%), Gaps = 25/247 (10%)
Query: 22 KKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRI 78
+ G W+ HM A I + MP +D+I+EV DARIP+SSE QLR P I
Sbjct: 3 RTGIQWFPGHMNKARNEIKEIMPQMDVIIEVLDARIPYSSENPMVGQLRGDKPV-----I 57
Query: 79 LVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA 138
+LNK DLA P Q + W+ +F++++ H+K N ++ + A + L
Sbjct: 58 KILNKADLADPEQTQAWMDYFEREDGVKTLAFGHDKGN---EVQRINALCKKLAPQKV-G 113
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
+ M++GIPNVGKS L N L GRI A +P TK +K+
Sbjct: 114 QDKQLKAMIMGIPNVGKSTLINILA--GRIV---------AKTGNEPAVTKAQQRIKLED 162
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWA 258
I + DTPG+L P++ + +LA TGAI D+ + +E+A Y L + + A
Sbjct: 163 --GIMLYDTPGMLWPKVENENSGYRLAATGAIRDTAINYEEVASYTAEYLLQAYPHLLQA 220
Query: 259 KFSINQI 265
++ I+++
Sbjct: 221 RYKIDEL 227
>gi|347534422|ref|YP_004841092.1| ribosome biogenesis GTPase A [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504478|gb|AEN99160.1| Ribosome biogenesis GTPase A [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 287
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 112/224 (50%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + + LVDI+ E+ DARIP++S E ++ P R+++L K
Sbjct: 7 WFPGHMAKAIRQFEENIKLVDIVFELVDARIPYTSINPEVKRISRDKP-----RLMILTK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSD-- 141
DLA P K+WI +F Q + ++S K+ + +++ +S + D
Sbjct: 62 ADLADPVMTKKWIEYFKSQGIRAIAIDSKVNGVRKKIENISEGILKDYLESQSNKGYDRK 121
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ + +G+PNVGKS L N L R A V +PG TK L S+
Sbjct: 122 ALKAICVGVPNVGKSTLLNQLVS-----------KRSAQVGNRPGVTKGQQWL--TSNGK 168
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ E+ KL+LTGAI +S ++A + L
Sbjct: 169 LVLLDTPGILWPKFQSQEIAEKLSLTGAIRESSFHSDDVALFAL 212
>gi|294791914|ref|ZP_06757062.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp.
6_1_27]
gi|294457144|gb|EFG25506.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp.
6_1_27]
Length = 301
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 113/232 (48%), Gaps = 35/232 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA ATR I + + VD+++E+ DARIP SS +L P I++LNK
Sbjct: 9 WFPGHMAKATRMITEYIKKVDVVIELLDARIPRSSANPVITELVGQKPH-----IVLLNK 63
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
+DLA P KEW FF +Q ++S + K+ + + V L K D
Sbjct: 64 VDLADPKATKEWTEFFTKQGIIVLAIDSKSGKGNKKLI----STVERLSKPIIDRWVAKG 119
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
S +V ++LGIPNVGKS L NSL A K G T+ +KI
Sbjct: 120 IRSRSVRTIILGIPNVGKSTLINSLAGSAATRTANKA-----------GHTRGQQWVKIG 168
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGG----KELAQYFL 245
N+ +LDTPG+L P++ D ++LA+TGAI D K+L Y L
Sbjct: 169 K--NLELLDTPGVLWPKLEDQCAAARLAMTGAISDDVYDLEHVIKQLLNYLL 218
>gi|125973281|ref|YP_001037191.1| GTP-binding protein YlqF [Clostridium thermocellum ATCC 27405]
gi|256003761|ref|ZP_05428749.1| GTP-binding protein HSR1-related protein [Clostridium thermocellum
DSM 2360]
gi|281417484|ref|ZP_06248504.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum JW20]
gi|385778807|ref|YP_005687972.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum DSM 1313]
gi|419723176|ref|ZP_14250311.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum AD2]
gi|419724920|ref|ZP_14251975.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum YS]
gi|125713506|gb|ABN51998.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum ATCC 27405]
gi|255992322|gb|EEU02416.1| GTP-binding protein HSR1-related protein [Clostridium thermocellum
DSM 2360]
gi|281408886|gb|EFB39144.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum JW20]
gi|316940487|gb|ADU74521.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum DSM 1313]
gi|380771540|gb|EIC05405.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum YS]
gi|380780943|gb|EIC10606.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum AD2]
Length = 291
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 130/266 (48%), Gaps = 33/266 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA R +A+ + +VD+++E+ DARIP SS E D + + P +I+VLNK
Sbjct: 5 WFPGHMAKTRRILAENLKMVDVVVELLDARIPASSKNPEIDGIVKNKP-----KIVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT- 142
DLA EW +++ Q + ++S +K+ L+ +R++ K +
Sbjct: 60 ADLADEKISNEWSKWYNSQGYATIFIDSIKGTGIKQ----LKDQMRDIMKDRIERDRQRG 115
Query: 143 -----VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ M++GIPNVGKS+L N + GK + A +PG T++ + +
Sbjct: 116 RIFRPIRTMIVGIPNVGKSSLINKIA----------GK-KSAVTGDRPGVTRNKQWINVN 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYK 255
+ I ++DTPGIL P+ D V LA+TGAI D + ELA L L+ + + K
Sbjct: 165 NE--IQLMDTPGILWPKFEDKTVGINLAVTGAIKDEIIDTVELASILLEHLSKTYPENIK 222
Query: 256 KWAKFSINQINKPLTLHHKADQSSGS 281
K K Q K L +A + G
Sbjct: 223 KRYKLESLQDKKGYELLEEAGKKRGC 248
>gi|434395207|ref|YP_007130154.1| Ras superfamily GTP-binding protein YlqF [Gloeocapsa sp. PCC 7428]
gi|428267048|gb|AFZ32994.1| Ras superfamily GTP-binding protein YlqF [Gloeocapsa sp. PCC 7428]
Length = 287
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 118/224 (52%), Gaps = 17/224 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H+A A +A+ +++ LVD++LEVRDARIP ++ Q++ + R+LVLN++D+
Sbjct: 8 WYPGHIAKAEKALKEQLRLVDVVLEVRDARIPLATHHPQVKEW--VGNKMRVLVLNRVDM 65
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVR--NLRKSDYDASSDTVT 144
P + W +F +Q + N+ + V K QA N R+ D V
Sbjct: 66 IQPQAQRMWAQWFREQGEEPYFTNAQKGEGVIAIAKAAQAAGVAVNQRRRDRGMLPRPVR 125
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
+++G PNVGKSAL N L + + +A + PG T+ + ++I+ + +
Sbjct: 126 AVVIGFPNVGKSALINRLLKRKVVESAAR-----------PGVTRQLRWVRISDQ--LEL 172
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
LD PG++P +++D + KLA+ IGD+ + +A + +L
Sbjct: 173 LDAPGVIPAKLNDQQAAFKLAICDDIGDASYDNQRVAATLVDLL 216
>gi|359785111|ref|ZP_09288268.1| ribosomal biogenesis GTPase [Halomonas sp. GFAJ-1]
gi|359297586|gb|EHK61817.1| ribosomal biogenesis GTPase [Halomonas sp. GFAJ-1]
Length = 317
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 111/214 (51%), Gaps = 28/214 (13%)
Query: 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLN 82
GW+ HM A R I D +P +D+++EV DAR+P+SS +L H P + +L+
Sbjct: 3 GWFPGHMNKARRQIKDALPEIDVVIEVLDARLPYSSANPMLAELTRHKPV-----LKILS 57
Query: 83 KMDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSD 141
+ DLA P + EW+ FFD Q++ + + + N +K+ +R +D D
Sbjct: 58 RADLADPERTAEWVAFFDAQEDTRALAITTTNTRELKKIPTLCHELAGAVR-ADRD---- 112
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V VM++GIPNVGKS L N L GR + A +P TK ++I
Sbjct: 113 -VRVMVMGIPNVGKSTLINGLA--GR---------KIAKTGNEPAVTKRQQKVRIDGR-- 158
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFV 235
+ ++DTPG+L P+I D +LA +GAI D+ +
Sbjct: 159 VALIDTPGVLWPKIEDQASAYRLAASGAIRDTAI 192
>gi|288905301|ref|YP_003430523.1| GTP-binding protein [Streptococcus gallolyticus UCN34]
gi|306831380|ref|ZP_07464539.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325978286|ref|YP_004288002.1| ribosomal biogenesis GTPase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|386337746|ref|YP_006033915.1| ribosomal biogenesis GTPase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|288732027|emb|CBI13592.1| putative conserved GTP-binding protein [Streptococcus gallolyticus
UCN34]
gi|304426440|gb|EFM29553.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325178214|emb|CBZ48258.1| ribosomal biogenesis GTPase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|334280382|dbj|BAK27956.1| ribosomal biogenesis GTPase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
Length = 284
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 116/232 (50%), Gaps = 24/232 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASSDT 142
A + KEW +F++Q + VNS + VK + + LR + +T
Sbjct: 64 ADSNRTKEWRNYFEKQGIKTLAVNSKEQATVKLVTDAARSLMADKLAKLR--ERGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + LNF +Y
Sbjct: 169 EILDTPGILWPKFEDEVVGLKLALTGAIKDQLLPMDEVTIFG---LNFFKKY 217
>gi|302191335|ref|ZP_07267589.1| hypothetical protein LineA_04927 [Lactobacillus iners AB-1]
gi|309804171|ref|ZP_07698249.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 11V1-d]
gi|309809273|ref|ZP_07703142.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
SPIN 2503V10-D]
gi|312871435|ref|ZP_07731530.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 3008A-a]
gi|312872375|ref|ZP_07732445.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 2062A-h1]
gi|325911972|ref|ZP_08174374.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
UPII 143-D]
gi|329921303|ref|ZP_08277741.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
SPIN 1401G]
gi|308163754|gb|EFO66023.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 11V1-d]
gi|308170386|gb|EFO72410.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
SPIN 2503V10-D]
gi|311092198|gb|EFQ50572.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 2062A-h1]
gi|311093088|gb|EFQ51437.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 3008A-a]
gi|325476157|gb|EGC79321.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
UPII 143-D]
gi|328934595|gb|EGG31099.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
SPIN 1401G]
Length = 279
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 123/249 (49%), Gaps = 26/249 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A + D++ L+D+I+EV DAR+P SS+ + ++ I++LNK DL
Sbjct: 6 WYPGHMNKAKNQLEDKLDLIDVIIEVLDARLPMSSKNPMI--SKLIANKAHIIILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD----YDASSDT 142
A + K W+ FF +Q +++ + +N+ +K ++ ++ K D A
Sbjct: 64 ADAIKTKAWVKFFQKQGILVLPMDAQHSNNMSGLIKLIKIATKD--KVDKIIAKGAKEPV 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ V + GIPN GKS + N L +GR V +PG T+ LK + NI
Sbjct: 122 IKVAIAGIPNCGKSTIINRL--VGR---------NATIVGDKPGVTRGQNWLK--TDTNI 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLG-----ILNFSDEYKKW 257
+LDTPGIL P+ D + KLA GAI DS +++ + L LN ++ K
Sbjct: 169 QILDTPGILWPKFDDRNIGLKLAACGAIKDSVFHADDVSIFVLKYLREQYLNLLVDFCKT 228
Query: 258 AKFSINQIN 266
+ I +IN
Sbjct: 229 SAEKIEKIN 237
>gi|167623693|ref|YP_001673987.1| ribosomal biogenesis GTPase [Shewanella halifaxensis HAW-EB4]
gi|167353715|gb|ABZ76328.1| GTP-binding protein HSR1-related [Shewanella halifaxensis HAW-EB4]
Length = 312
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 116/227 (51%), Gaps = 31/227 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + I + MP VD+++EV DARIP+SSE LR P I +LNK
Sbjct: 5 WYPGHMHKARKEIEEVMPQVDLVIEVLDARIPYSSENPMVQTLRGDKPC-----IKLLNK 59
Query: 84 MDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P ++WI + + +Q + + + VK+ + V N K + D
Sbjct: 60 SDLADPETTQQWIEYLEREQGVKAMAITTLQASQVKKIPDLCRKFVPNRDKIEKD----- 114
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS + N+L GR+ A +P TK +I I
Sbjct: 115 IRTMIMGIPNVGKSTIINTLA--GRMI---------AKTGNEPAVTKT--QQRINLRNGI 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKEL----AQYFL 245
+ DTPGIL P++ + + +LA+TGAI D+ + +++ A+YFL
Sbjct: 162 VLSDTPGILWPKVDNEKSSYRLAVTGAIKDTAMEYEDVAMFAAEYFL 208
>gi|333897176|ref|YP_004471050.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333112441|gb|AEF17378.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 278
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 110/229 (48%), Gaps = 23/229 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA R I + + +VDI+ E+ DARIP SS D L + +RI++LNK
Sbjct: 4 WYPGHMAKTKRLIEENLKIVDIVYELLDARIPRSSRNPLIDDL-----VKNKKRIILLNK 58
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL-RKSDYDASSDT 142
DLA K W +F+ + S +NS + ++ + ++ K
Sbjct: 59 SDLADLEVNKMWNDYFNLKGHVSININSLDSKCIQSIYELTLKECSDIIDKKRQKGIKAK 118
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS L NSL K ++A +PG TK S + P
Sbjct: 119 LRAMIVGIPNVGKSTLINSLT-----------KTKNAKTGNKPGVTK---SKQWIKTPYF 164
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFS 251
+LDTPGIL P+ D V LALT AI D + +ELA L IL +
Sbjct: 165 DLLDTPGILWPKFEDEHVGMMLALTSAIKDELLNHEELAYLLLDILKIN 213
>gi|392960563|ref|ZP_10326031.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
DSM 17108]
gi|421054680|ref|ZP_15517645.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
B4]
gi|421061048|ref|ZP_15523432.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
B3]
gi|421063740|ref|ZP_15525686.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
A12]
gi|421071543|ref|ZP_15532659.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
A11]
gi|392440361|gb|EIW18041.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
B4]
gi|392446808|gb|EIW24079.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
A11]
gi|392452123|gb|EIW29076.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
B3]
gi|392455140|gb|EIW31947.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
DSM 17108]
gi|392462310|gb|EIW38405.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
A12]
Length = 286
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 109/230 (47%), Gaps = 19/230 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM A R I + LVD+++E+ DARIP SS + H R++ LNK+DL
Sbjct: 8 WFPGHMTKALRMIQANLKLVDVVIELLDARIPVSSANPVI--HQILEGKPRVVALNKIDL 65
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDASSDTVT 144
A P K+W+ F Q ++S K + ++ + + + V
Sbjct: 66 AEPEWTKQWVDTFHAQGLQVVTIDSMTGRGTKALVSQVEQLGSAKAAKLVAKGVNPRAVR 125
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M+LGIPNVGKS+L N L + A+K PG T+ + I N+ +
Sbjct: 126 AMILGIPNVGKSSLINRLLGTKAVRTADK-----------PGVTRGKQWITIGK--NLEL 172
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSD 252
LDTPG+L P+ D EV KLA+TGAI D + L L N+SD
Sbjct: 173 LDTPGVLWPKFEDPEVGFKLAMTGAINDDIYDVETAMSKLLLFLRENYSD 222
>gi|409202346|ref|ZP_11230549.1| GTPase YlqF [Pseudoalteromonas flavipulchra JG1]
Length = 314
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 114/231 (49%), Gaps = 37/231 (16%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A I + MP +D+I+EV DARIP+SSE QLR P I ++NK
Sbjct: 5 WFPGHMNKARNEIKEIMPQMDVIIEVLDARIPYSSENPMVGQLRGDKPV-----IKIMNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDN----VKEFLKFLQAHVRNLRKSDYDAS 139
DLA P K+W+ +F++++ H+K N + K L H K
Sbjct: 60 ADLADPELTKQWMAYFERESGVKALAFGHDKANEVQRINALCKKLAPHKVGQDKQ----- 114
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS L N+L GRI A +P TK +K+
Sbjct: 115 ---LKAMIMGIPNVGKSTLINTLA--GRIV---------AKTGNEPAVTKAQQRIKLED- 159
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKEL----AQYFLG 246
I + DTPG+L P++ + +LA TGAI D+ + +E+ A+Y LG
Sbjct: 160 -GIMLYDTPGMLWPKVENENSGYRLAATGAIRDTAINYEEVASYTAEYLLG 209
>gi|134299894|ref|YP_001113390.1| HSR1-like GTP-binding protein [Desulfotomaculum reducens MI-1]
gi|134052594|gb|ABO50565.1| Ras superfamily GTP-binding protein YlqF [Desulfotomaculum reducens
MI-1]
Length = 284
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 119/245 (48%), Gaps = 23/245 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + D + LVD+ E+ DARIP SS DQ+ P R+++LNK
Sbjct: 7 WFPGHMAKAKRQVQDALKLVDVAFELLDARIPVSSSNPMIDQILGQKP-----RVIILNK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV--RNLRKSDYDASSD 141
DLA P+ K+W D+ + V++ + +KE + V + + +
Sbjct: 62 SDLADPSITKQWQRALDRPYIKAIAVDTIKGEGLKEVPRVASMLVAEQMAKLAAKGRRPR 121
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M+LGIPNVGKS N L +GR + PG TK I + +
Sbjct: 122 AIRCMVLGIPNVGKSTFINRL--VGR---------KATKTGDTPGVTKG--QQWIRTQGS 168
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
+ +LDTPGIL P+ D EV KLA+TGAI + E++ L L + K ++
Sbjct: 169 LELLDTPGILWPKFEDPEVGYKLAVTGAIKEQVFDIYEVSLKLLQWLAEYNPEKLKERYR 228
Query: 262 INQIN 266
+N++N
Sbjct: 229 MNELN 233
>gi|332523230|ref|ZP_08399482.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
porcinus str. Jelinkova 176]
gi|332314494|gb|EGJ27479.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
porcinus str. Jelinkova 176]
Length = 287
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 118/232 (50%), Gaps = 24/232 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQA----HVRNLRKSDYDASSDT 142
A ++ KEW F++ + + +NS + VK+ +A + LR+ +T
Sbjct: 64 ADQSRTKEWQQFYESKGIKTLAINSKEQATVKKVTDAARALMTDKIAKLRQRGI--QKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + LN+ EY
Sbjct: 169 EILDTPGILWPKFEDQVVGLKLALTGAIKDQLLPLDEVTIFG---LNYFKEY 217
>gi|313889406|ref|ZP_07823054.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudoporcinus SPIN 20026]
gi|416852581|ref|ZP_11909726.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudoporcinus LQ 940-04]
gi|313122238|gb|EFR45329.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudoporcinus SPIN 20026]
gi|356740070|gb|EHI65302.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudoporcinus LQ 940-04]
Length = 287
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 118/234 (50%), Gaps = 23/234 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQA----HVRNLRKSDYDASSDT 142
A ++ KEW F++ + + +NS + VK+ +A + LR+ +T
Sbjct: 64 ADQSRTKEWQQFYESKGIKTLAINSKEQSTVKKVTDAAKALMSDKITKLRQRGI--QKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KVAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKK 256
+LDTPGIL P+ D V KLALTGAI D + ++ GI F + Y K
Sbjct: 169 EILDTPGILWPKFEDQGVGLKLALTGAIKDQLLPLDDVT--IFGINYFKEYYPK 220
>gi|323702666|ref|ZP_08114327.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
nigrificans DSM 574]
gi|333923310|ref|YP_004496890.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|323532329|gb|EGB22207.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
nigrificans DSM 574]
gi|333748871|gb|AEF93978.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 282
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 115/224 (51%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + D + LVD +E+ DARIP SS DQ+ + P R+++LNK
Sbjct: 7 WFPGHMAKAKRQVQDALKLVDAAIELLDARIPVSSRNPMIDQIVGNKP-----RLVILNK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN-LRKSDYDASSDT 142
DLA P K+W ++ N +++ + +KE + V + + K
Sbjct: 62 SDLADPNLTKQWQKQLERPNVKVIAIDTIKGEGIKEVPRMASLLVADQMAKLAAKGRRPR 121
Query: 143 VT-VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
T M+LGIPNVGKS+ N L +GR A + G L PG TK +K+A +
Sbjct: 122 ATRCMVLGIPNVGKSSFINRL--VGR-KATKTGNL--------PGVTKGQQWIKVAG--S 168
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D EV KLA+TGAI + E+A L
Sbjct: 169 LELLDTPGILWPKFEDPEVGFKLAVTGAIKEQVFNFYEVALKLL 212
>gi|421767749|ref|ZP_16204490.1| 50S ribosomal subunit maturation GTPase RbgA [Lactococcus garvieae
DCC43]
gi|407623705|gb|EKF50521.1| 50S ribosomal subunit maturation GTPase RbgA [Lactococcus garvieae
DCC43]
Length = 285
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 119/235 (50%), Gaps = 27/235 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM+ A R + + + VD ++E+ DAR+P SS D++ P R++ LNK
Sbjct: 7 WFPGHMSKARRQVQENLKYVDFVIELVDARLPISSRNPMLDKIIGDKP-----RLIALNK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNS---HNKDNVKEFLKFLQAHVRNLRKSDYDASS 140
DLA K W+ FF+ Q + +NS H + K L A + R ++ +
Sbjct: 62 ADLADRNAVKSWVEFFESQGIIALAINSKEAHTSKRLTVAAKTLMAD-KLARNAERGIQN 120
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
++ M++GIPN GKS L N L GK + A +PG TK L+ ++
Sbjct: 121 SSLRTMIVGIPNAGKSTLMNRLA----------GK-KVAVTGNKPGVTKGQQWLR--TNK 167
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYK 255
+ +LDTPGIL P+ D +V KLALTGAI D + ++ + G+ +F + Y+
Sbjct: 168 ELEILDTPGILWPKFEDDQVGLKLALTGAIKDQLLPMDDVTIF--GLQHFLENYQ 220
>gi|363897286|ref|ZP_09323825.1| ribosome biogenesis GTP-binding protein YlqF [Oribacterium sp.
ACB7]
gi|361958783|gb|EHL12080.1| ribosome biogenesis GTP-binding protein YlqF [Oribacterium sp.
ACB7]
Length = 292
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 113/228 (49%), Gaps = 23/228 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HMA A R + + +PLVD I+EV D+R P SS E D L RI++ NK
Sbjct: 5 WYPGHMAKAKRKMKEDLPLVDAIIEVIDSRCPNSSRNPEIDILAKDKA-----RIMLFNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
DLA P + K ++ F +Q + +++ ++ +VK K + L RK S
Sbjct: 60 ADLADPGRTKSFMESFQKQGFYTMEIDARSRSSVKGVNKLIMESCAELLERKKQKGILSQ 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
++ M+LGIPNVGKS N+ +G+ TA K PG TK +KI +
Sbjct: 120 SIKAMVLGIPNVGKSTFINAY--VGKATAKTGNK---------PGVTKGAQWIKIGK--D 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ +LDTPGI P+ V LAL G+I D + +EL Y L L
Sbjct: 167 LQLLDTPGITWPKFEREIVGLNLALIGSINDEILPIEELIFYLLKYLT 214
>gi|401565318|ref|ZP_10806158.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp.
FOBRC6]
gi|400187907|gb|EJO22097.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp.
FOBRC6]
Length = 300
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 114/225 (50%), Gaps = 20/225 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A R + + + LVD++LE+ DARIP SS LR R++VLNK DL
Sbjct: 15 WYPGHMRKAERLVKENLKLVDVVLELLDARIPLSSANPVLR--EIVGEKPRLIVLNKADL 72
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDASSDTVT 144
A + W+ +F Q + V++ VKE ++ + A + + + A +
Sbjct: 73 ADEAATRTWVKYFATQGLAAVPVDAVKGRGVKELVQAIAKCAKPKTDKLVQHGAKARAAR 132
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M+LGIPNVGKS+L N R++ K K V +PG T+ +++ + + +
Sbjct: 133 CMILGIPNVGKSSLIN------RLSGGTKTK-----VENRPGVTRAKQWIRLGAQ--LEL 179
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
LD PGIL P+ D + LA TGAI D+ ++A L +LN
Sbjct: 180 LDMPGILWPKFEDQQAALHLAFTGAINDNVY---DVASVVLLLLN 221
>gi|225870571|ref|YP_002746518.1| ribosomal biogenesis GTPase [Streptococcus equi subsp. equi 4047]
gi|225699975|emb|CAW93947.1| putative GTPase protein [Streptococcus equi subsp. equi 4047]
Length = 284
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 120/232 (51%), Gaps = 24/232 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMLLNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A T K+W ++++Q + +N+ + VK E K L A +R LR+ +T
Sbjct: 64 ADNTHTKKWQQYYEKQGIKTLAINAKEQATVKRVTEAAKELMADKLRRLRERG--IQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + ATV +PG TK LK S+ +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIATVGNKPGVTKGQQWLK--SNKEL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + LN+ +Y
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFG---LNYFKKY 217
>gi|373464336|ref|ZP_09555875.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
kisonensis F0435]
gi|371762538|gb|EHO51067.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
kisonensis F0435]
Length = 292
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 117/224 (52%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMD 85
W+ HMA A R + + LVDI+ EV DARIP+SS+ +++ S+ + + ++ K D
Sbjct: 7 WFPGHMAKAIRQFEENLSLVDIVFEVIDARIPYSSQNPEIKR---ISADKPHLFIMTKRD 63
Query: 86 LASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLK----FLQAHVRNLRKSDYDASSD 141
LA P W+ +F + P+ +++ + + + L+A ++ R+ D
Sbjct: 64 LADPKMTASWLRYFKEIKQPAIAIDAKTQFGINNVISVISPILKAKLQ--REEDKGMKKR 121
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ + +G+PNVGKS + N L + R R A V +PG TK LK S
Sbjct: 122 PIRAISVGVPNVGKSTVLNRL--VNR---------RAAQVGNRPGVTKGQQWLKSGS--K 168
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ + E+ +KLALTGAI DS ++A + L
Sbjct: 169 LELLDTPGILWPKFANQEIANKLALTGAIKDSVFHSDDIALFAL 212
>gi|357053018|ref|ZP_09114122.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
clostridioforme 2_1_49FAA]
gi|355386443|gb|EHG33483.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
clostridioforme 2_1_49FAA]
Length = 288
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 112/227 (49%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A RA+ + M L+D+++E+ DAR+P SS + D L + R+++LNK
Sbjct: 5 WYPGHMTKAKRAMKEDMKLIDLVIELVDARVPLSSRNPDIDDL-----GAGKARMVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DLA Q W +F+ + +++ NK +K+ +Q + + D +
Sbjct: 60 SDLADEGQNARWAAWFEDKGIHVVKIDARNKGTLKQVQSVIQEACKEKIERDRRRGILNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS NS GR A K PG TK +++ +
Sbjct: 120 PIRTMVVGIPNVGKSTFINSFA--GRACAKTGNK---------PGVTKGNQWIRL--NKT 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P D +V KLAL G+I D + ELA + L
Sbjct: 167 LELLDTPGILWPRFEDQQVGLKLALIGSINDQILNKDELAWELIRFL 213
>gi|428206140|ref|YP_007090493.1| Ras superfamily GTP-binding protein YlqF [Chroococcidiopsis
thermalis PCC 7203]
gi|428008061|gb|AFY86624.1| Ras superfamily GTP-binding protein YlqF [Chroococcidiopsis
thermalis PCC 7203]
Length = 285
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 27/230 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A +A+A+++ LVD++LEVRDARIP ++ HHP + R+L+L
Sbjct: 7 WYPGHIAKAEKALAEQLKLVDVVLEVRDARIPLAT-------HHPRVPEWVGNKTRVLIL 59
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDAS 139
N++D P + W +F + + N+ + + V + L+ Q N R+ +
Sbjct: 60 NRVDAIPPAVRQLWQQWFKTRGETVYFTNAKDGNGVGQVLQVAQRAGDEINQRRKNRGLL 119
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ V +G PNVGKSAL N L + RI +E +PG T+ + ++I+
Sbjct: 120 ARPVRAAAIGFPNVGKSALINRLLK-RRIVVSEA----------RPGVTRQLRWVRISDR 168
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ +LD PG++P ++ D KLA+ IGD+ ++A F+ +L
Sbjct: 169 --VELLDAPGVIPTKLEDQAAAIKLAICDDIGDAAYDSYQVAVIFIDLLQ 216
>gi|291534103|emb|CBL07216.1| Ras superfamily GTP-binding protein YlqF [Megamonas hypermegale
ART12/1]
Length = 269
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 121/243 (49%), Gaps = 21/243 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R I + + LVD+++E+RDARIP SS L++ ++ LNK+DL
Sbjct: 18 WFPGHMAKAKRIIVENLKLVDVVIELRDARIPNSSANPILKDL--IGKKPHLIALNKIDL 75
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDASSDTVT 144
A +W +F +NS + +++ + A V+ + ++
Sbjct: 76 ADNNINNKWEEYFTSMGKSVVKINSLDGKGIRQLVTVADELAKVKTAKFANKGVKPRNAR 135
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
VM++GIPNVGKS+L N L + A+K PG T+ +KI + N+ +
Sbjct: 136 VMIVGIPNVGKSSLINRLSGSASLKTADK-----------PGVTRAKQWIKIKN--NLDL 182
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAK--FSI 262
LDTPGIL P+ D EV LA TGAI D + A+ L L D+Y K K + I
Sbjct: 183 LDTPGILWPKFEDPEVGLNLAFTGAISDEVYDIERAAEILLWRL--KDDYAKNIKERYKI 240
Query: 263 NQI 265
++I
Sbjct: 241 DEI 243
>gi|421074171|ref|ZP_15535211.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
JBW45]
gi|392527677|gb|EIW50763.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
JBW45]
Length = 286
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 109/230 (47%), Gaps = 19/230 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM A R I + LVD+++E+ DARIP SS + H R++ LNK+DL
Sbjct: 8 WFPGHMTKALRMIQANLKLVDVVIELLDARIPVSSANPVI--HQILEGKPRVVALNKIDL 65
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDASSDTVT 144
A P K+W+ F Q ++S K + ++ + + + V
Sbjct: 66 AEPEWTKQWVDTFHVQGLQVVTIDSMTGKGTKALVSQVEQLGSAKAAKLVAKGVNPRAVR 125
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M+LGIPNVGKS+L N L + A+K PG T+ + I N+ +
Sbjct: 126 AMILGIPNVGKSSLINRLLGTKAVRTADK-----------PGVTRGKQWITIGK--NLEL 172
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSD 252
LDTPG+L P+ D EV KLA+TGAI D + L L N+SD
Sbjct: 173 LDTPGVLWPKFEDPEVGFKLAMTGAINDDIYDVETAMSKLLLFLRENYSD 222
>gi|414563982|ref|YP_006042943.1| GTPase protein [Streptococcus equi subsp. zooepidemicus ATCC 35246]
gi|338847047|gb|AEJ25259.1| GTPase protein [Streptococcus equi subsp. zooepidemicus ATCC 35246]
Length = 284
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 118/232 (50%), Gaps = 23/232 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMLLNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A T K+W ++++Q + +N+ + VK E K L A +R LR+ +T
Sbjct: 64 ADNTHTKKWQQYYEKQGIKTLAINAKEQATVKRVTEAAKELMADKLRRLRERGI--QKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + ATV +PG TK LK S+ +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIATVGNKPGVTKGQQWLK--SNKEL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ G+ F Y
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVT--IFGLNYFKKHY 218
>gi|307176883|gb|EFN66224.1| Mitochondrial GTPase 1 [Camponotus floridanus]
Length = 328
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 114/235 (48%), Gaps = 28/235 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIP-------FSSEFDQLRNHHPFSSSRRIL 79
W+ HM + + R+ VD ILEV DARIP FS L+ H I
Sbjct: 24 WFPGHMTKGLKQMQQRLKHVDCILEVHDARIPISGRYADFSRTLTGLKPH--------IF 75
Query: 80 VLNKMDLASPTQFKEWITFFDQQNCPSF---GVNSHNKDNVKEFLKFLQAHVRNLRKSDY 136
VL+K DLA K ++ +++ + + N+K+ L + + N S Y
Sbjct: 76 VLSKKDLADRKYSKSIVSTLNREGLSNIIFTNLKDEQCKNMKKILPLAKKLISN--SSRY 133
Query: 137 D-ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-L 194
+ A ++ +M++G+PNVGKS+L N R+ + R V +PG T+ + + +
Sbjct: 134 NRAQEESYCMMVIGVPNVGKSSLIN------RLRSNHLNMARATHVGAEPGITRSVLTRI 187
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
KI+ P +++ DTPGIL P I D+ KLAL G + D VG LA Y L LN
Sbjct: 188 KISEDPTVFLFDTPGILAPSIKDIHTGFKLALVGCLQDHVVGSYMLADYLLFWLN 242
>gi|321479043|gb|EFX89999.1| hypothetical protein DAPPUDRAFT_186925 [Daphnia pulex]
Length = 358
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 125/240 (52%), Gaps = 15/240 (6%)
Query: 21 QKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RIL 79
+KK W+ HM + + ++ LVD +LEV DARIP S L H F +++ IL
Sbjct: 50 EKKSTQWFPGHMNRGMKQMEAKLKLVDCVLEVHDARIPISGRNPNL--THSFVAAKPYIL 107
Query: 80 VLNKMDLASPTQFKEWI--TFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD 137
VLNK DL P++++ I +++N + D + + + + +++
Sbjct: 108 VLNKCDLI-PSEYQSTIMSALKERENIQHIIFTNSKLDTCPGLKEVTKRAAQLITETERY 166
Query: 138 ASSDTV--TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-L 194
SD V +M+ G+PNVGKS+L N+L + K R V+P+ G TK+++ +
Sbjct: 167 NRSDAVDYNLMVFGVPNVGKSSLINALRGV------HMRKKRVLQVAPEAGLTKNVHERI 220
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
++ + P +Y+ DTPGI+ P I ++V +LA + D VG + + Y L LN ++E+
Sbjct: 221 RVCNSPAVYLFDTPGIMNPRIATMDVGMRLASCASFKDHLVGEESVVDYLLFWLNKNEEF 280
>gi|116333442|ref|YP_794969.1| GTPase [Lactobacillus brevis ATCC 367]
gi|116098789|gb|ABJ63938.1| Ras superfamily GTP-binding protein YlqF [Lactobacillus brevis ATCC
367]
Length = 286
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 116/233 (49%), Gaps = 26/233 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + + + LVDI+ E+ DARIP +S E ++ + P +++L K
Sbjct: 6 WFPGHMAKAIRQMEENIHLVDIVFELVDARIPAASRNPEVTRIAKNKPH-----LIILTK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA--SSD 141
DLA P Q W+ ++ +Q+ P+ ++S K+ K + + + ++
Sbjct: 61 KDLADPQQTAAWLAYYREQHQPAIAIDSRANVTPKQITKIAASILADKLAAEKAKGLKER 120
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M +G+PNVGKS L N L Q + A V PG TK L+ + H
Sbjct: 121 PMRAMTVGVPNVGKSTLLNHLVQ-----------RKAAQVGDTPGVTKGQQWLRSSKH-- 167
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+ +LDTPGIL P+ D E KLALTGAI + ++A L LNF +Y
Sbjct: 168 LELLDTPGILWPKFKDQETAQKLALTGAIKEKLYAKDDVA---LFALNFFRQY 217
>gi|392543263|ref|ZP_10290400.1| GTPase YlqF [Pseudoalteromonas piscicida JCM 20779]
Length = 314
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 114/231 (49%), Gaps = 37/231 (16%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A I + MP +D+I+EV DARIP+SSE QLR P I ++NK
Sbjct: 5 WFPGHMNKARNEIKEIMPQMDVIIEVLDARIPYSSENPMVGQLRGDKPV-----IKIMNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDN----VKEFLKFLQAHVRNLRKSDYDAS 139
DLA P K+W+ +F++++ H+K N + K L H K
Sbjct: 60 ADLADPELTKQWMEYFERESGVKALAFGHDKANEVQRINALCKKLAPHKVGQDKQ----- 114
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS L N+L GRI A +P TK +K+
Sbjct: 115 ---LKAMIMGIPNVGKSTLINTLA--GRIV---------AKTGNEPAVTKAQQRIKLED- 159
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKEL----AQYFLG 246
I + DTPG+L P++ + +LA TGAI D+ + +E+ A+Y LG
Sbjct: 160 -GIMLYDTPGMLWPKVENENSGYRLAATGAIRDTAINYEEVASYTAEYLLG 209
>gi|357238989|ref|ZP_09126325.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
ictaluri 707-05]
gi|356752711|gb|EHI69836.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
ictaluri 707-05]
Length = 282
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 114/221 (51%), Gaps = 17/221 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK+DL
Sbjct: 6 WFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKVDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSDTVT 144
A + KEW +F+ Q + +NS + VK+ + Q+ + + R + +T+
Sbjct: 64 ADNARTKEWKKYFEAQGIKTLAINSKEQATVKKVTEAAQSLMSDKLDRLRERGIQKETLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPN GKS L N L GK + A V +PG TK LK S+ + +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKVLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
LDTPGIL P+ D V KLALTGAI D + E+ + L
Sbjct: 171 LDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|339301523|ref|ZP_08650621.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
agalactiae ATCC 13813]
gi|319744986|gb|EFV97314.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
agalactiae ATCC 13813]
Length = 283
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 118/244 (48%), Gaps = 23/244 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A P + KEW F++ Q + +NS + VK + K L + + LR +T
Sbjct: 64 ADPIRTKEWRDFYESQGLKTLAINSKEQSIVKKVTDIAKILMSDKIAKLRGR--GIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262
+LDTPGIL P+ D V KLALTGAI D + E+ G+ F Y K
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVT--IFGLNYFKTYYPDRLKERF 226
Query: 263 NQIN 266
IN
Sbjct: 227 KSIN 230
>gi|395842569|ref|XP_003794089.1| PREDICTED: mitochondrial GTPase 1 isoform 1 [Otolemur garnettii]
Length = 300
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 116/223 (52%), Gaps = 17/223 (7%)
Query: 32 MAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNKMDLAS 88
MA + + + + VD ++EV DARIP S F + P +LVLNKMDLA
Sbjct: 1 MAKGLKKMQNSLKRVDCVVEVHDARIPLSGRNPLFQETLGIKP-----HLLVLNKMDLAD 55
Query: 89 PTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYDASSDTVTVML 147
T+ ++ + + Q + + KD N+K+ + + + N + + D +M+
Sbjct: 56 LTEKQKIMQHLEGQGLKNVIFTNCVKDENIKQVIPMVTELIGNSCRYQRGENLD-YCIMV 114
Query: 148 LGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYVLD 206
+G+PNVGKS+L NSL R KGK V +PG T+ + S +++ P +++LD
Sbjct: 115 IGVPNVGKSSLINSL----RRQHLRKGK--ATRVGGEPGITRAVMSRIQVCERPLMFLLD 168
Query: 207 TPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
TPG+L P I VE KLAL G + D VG + +A Y L LN
Sbjct: 169 TPGVLSPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 211
>gi|186684739|ref|YP_001867935.1| ribosomal biogenesis GTPase [Nostoc punctiforme PCC 73102]
gi|186467191|gb|ACC82992.1| GTP-binding protein, HSR1-related [Nostoc punctiforme PCC 73102]
Length = 293
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 116/231 (50%), Gaps = 27/231 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A + + +++ VD++ EVRDARIP ++ HHP R+L+L
Sbjct: 14 WYPGHIAKAEKKLKEQLKRVDVVFEVRDARIPLAT-------HHPQIGEWVEGKTRVLIL 66
Query: 82 NKMDLASPTQFKEWITFFDQQ-NCPSFGVNSHNKDNVKEFLKFLQAHVR-NLRKSDYDAS 139
N++D+ +P WI +F +Q P F H K + A V N R+SD
Sbjct: 67 NRVDMITPQMRSLWIDWFKRQGEVPYFTNAQHGKGIAEVARAAQAAGVELNQRRSDRGML 126
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
V +++G PNVGKSAL N L +GR R + +PG T+ + ++I+ H
Sbjct: 127 PRPVRAVVIGFPNVGKSALINRL--LGR---------RVVESAARPGVTRQLRWVRISEH 175
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNF 250
+ +LD PG++P + D + KLA+ IG++ + +A + + N+
Sbjct: 176 --LELLDAPGVIPLRLEDQDAALKLAICDDIGEASYDNQLVAAALVDLFNY 224
>gi|427392628|ref|ZP_18886633.1| ribosome biogenesis GTP-binding protein YlqF [Alloiococcus otitis
ATCC 51267]
gi|425731138|gb|EKU93959.1| ribosome biogenesis GTP-binding protein YlqF [Alloiococcus otitis
ATCC 51267]
Length = 281
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 117/240 (48%), Gaps = 29/240 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++ LVDI+LE+ DAR+P SS DQ+ P R+ +L K
Sbjct: 6 WYPGHMAKAKREFQEKLKLVDIVLELLDARLPESSSNPMLDQIIQDKP-----RLKILMK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDY--DASSD 141
DLA + +W+ ++ Q P+ +N +K ++K+ ++ + + +K +
Sbjct: 61 ADLADQKRTNQWLNYYQDQGKPAMALNVKHKQDMKDVTDQIKVVLSDWQKQRQAKGLNQR 120
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V + +GIPNVGKS L N GK A +PG T+ +K
Sbjct: 121 AVKAVSVGIPNVGKSTLINRFA----------GK-NIAQTGNRPGVTQAQQWIKYKGV-- 167
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN------FSDEYK 255
+ +LDTPGIL P+ D EV KLALTGAI D + ++A Y + F D Y+
Sbjct: 168 LELLDTPGILWPKFEDQEVGKKLALTGAIKDKLLYMDDIALYAIDFFKAHYPGRFEDRYQ 227
>gi|374323443|ref|YP_005076572.1| GTPase family protein [Paenibacillus terrae HPL-003]
gi|357202452|gb|AET60349.1| gtpase family protein [Paenibacillus terrae HPL-003]
Length = 286
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 116/233 (49%), Gaps = 36/233 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A R I ++ L+D+++E+ DAR+P SS D + P R+++LNK
Sbjct: 5 WFPGHMTRARRQIEAKLKLIDLVIELIDARLPLSSRNPMIDDILQGKP-----RMIILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT- 142
DLA P ++WI +F +Q +F V++ +KE +QA + K D S
Sbjct: 60 ADLADPVVSQQWIAYFKEQGHIAFQVDATTGTGMKEIP--VQAKLLLKEKIDRQISKGMN 117
Query: 143 ---VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ +++GIPNVGKS L N + GR AA +PG TK +K
Sbjct: 118 PRPMRALIVGIPNVGKSTLINRMA--GRSIAA---------TGDRPGVTKAQQWIKTG-- 164
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGD--------SFVGGKELAQYF 244
I +LDTPGIL P+ D V +LA+TGAI + +F K L QY+
Sbjct: 165 -EIELLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNVEDIAFFATKYLVQYY 216
>gi|310658878|ref|YP_003936599.1| ribosomal biogenesis GTPase [[Clostridium] sticklandii]
gi|308825656|emb|CBH21694.1| ribosomal biogenesis GTPase [[Clostridium] sticklandii]
Length = 328
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM I + + LVD++LE+ DAR P+S+ + D + + P +++VLNK
Sbjct: 48 WYPGHMKKTKEQILENIKLVDVVLEIVDARAPYSTSNPDIDDMVKNLP-----KVVVLNK 102
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRK--SDYDASSD 141
DLA + ++WI ++ + S +NS + E L L ++L K
Sbjct: 103 EDLADSNKTQQWIEYYKTKGHESAMINSLTGKGLNELLASLNNKSKDLYKKLESKGRRKR 162
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ VM++GIPNVGKS++ N + +G+ + A +PG TK +K+ +
Sbjct: 163 ALRVMVVGIPNVGKSSIINRI--VGK---------KSAQTGDRPGVTKGKQWVKLKG--D 209
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPG+L P+I D V KLA G+I D + +E+A + L
Sbjct: 210 LELLDTPGVLWPKIEDQSVAMKLAFLGSIKDQVMEIEEIAMELIKYL 256
>gi|171779428|ref|ZP_02920392.1| hypothetical protein STRINF_01273 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282045|gb|EDT47476.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantarius subsp. infantarius ATCC BAA-102]
Length = 309
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 118/232 (50%), Gaps = 24/232 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 31 WFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 88
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A + KEW +F+ Q + VNS + VK E K L A + LR + +T
Sbjct: 89 ADSNRTKEWRRYFESQGIKTLAVNSKEQATVKLVTEAAKSLMADKLAKLR--ERGIQKET 146
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 147 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAIVGNKPGVTKGQQWLK--SNKDL 193
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + LNF E+
Sbjct: 194 EILDTPGILWPKFEDEVVGLKLALTGAIKDQLLPMDEVTIFG---LNFFKEH 242
>gi|338716360|ref|XP_003363446.1| PREDICTED: mitochondrial GTPase 1-like [Equus caballus]
Length = 345
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 114/225 (50%), Gaps = 23/225 (10%)
Query: 33 AAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNKMDLASP 89
A+ + + + LVD I+EV DARIP S F + P +LVLNKMDLA
Sbjct: 39 ASGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPH-----LLVLNKMDLADL 93
Query: 90 TQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYD---ASSDTVTV 145
+ ++ I + + + + KD NVK+ + V L S Y S +
Sbjct: 94 KERQKIIRHLEGEGLKNVIFTNCVKDENVKQIVPM----VTELIGSSYRYHRGESLEYCI 149
Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYV 204
M++G+PNVGKS+L NSL R KGK V +PG T+ + S +++ P +++
Sbjct: 150 MVIGVPNVGKSSLINSL----RRQHLRKGK--ATRVGGEPGITRAVMSRIQVCERPLMFL 203
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
LDTPG+L P I VE KLAL G + D VG + LA Y L LN
Sbjct: 204 LDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETLADYLLYTLN 248
>gi|363899265|ref|ZP_09325775.1| ribosome biogenesis GTP-binding protein YlqF [Oribacterium sp.
ACB1]
gi|395209656|ref|ZP_10398750.1| ribosome biogenesis GTP-binding protein YlqF [Oribacterium sp.
ACB8]
gi|361959102|gb|EHL12398.1| ribosome biogenesis GTP-binding protein YlqF [Oribacterium sp.
ACB1]
gi|394705287|gb|EJF12816.1| ribosome biogenesis GTP-binding protein YlqF [Oribacterium sp.
ACB8]
Length = 292
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 113/228 (49%), Gaps = 23/228 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HMA A R + + +PLVD I+EV D+R P SS E D L RI++ NK
Sbjct: 5 WYPGHMAKAKRKMKEDLPLVDAIIEVIDSRCPNSSRNPEIDILAKDKA-----RIMLFNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
DLA P + K ++ F +Q + +++ ++ +VK K + L RK S
Sbjct: 60 ADLADPARTKSFMESFRKQGFYTMEMDARSRSSVKGVSKLVMESCAELLERKKQKGILSQ 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
++ M+LGIPNVGKS N+ +G+ TA K PG TK +KI +
Sbjct: 120 SIKAMVLGIPNVGKSTFINAY--VGKATAKTGNK---------PGVTKGAQWIKIGK--D 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ +LDTPGI P+ V LAL G+I D + +EL Y L L
Sbjct: 167 LQLLDTPGITWPKFEREIVGLNLALIGSINDEILPIEELIFYLLKYLT 214
>gi|318037339|ref|NP_001187294.1| mitochondrial GTPase 1 [Ictalurus punctatus]
gi|338818318|sp|E3TDS3.1|MTG1_ICTPU RecName: Full=Mitochondrial GTPase 1; Flags: Precursor
gi|308322643|gb|ADO28459.1| mitochondrial GTPase 1 [Ictalurus punctatus]
Length = 320
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 136/266 (51%), Gaps = 23/266 (8%)
Query: 4 SSSSLFKLAREIGTAVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE- 62
++SS F+ + G +++ W+ HMA + + VD ++E+ DARIPFS
Sbjct: 9 NASSKFRTVFDFG----ERQVAHWFPGHMAKGLKQMRASPRKVDCVIEIHDARIPFSGRN 64
Query: 63 --FDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKD---NV 117
F + + P +L+LNKMDLA + + ++ + + K +V
Sbjct: 65 PLFQENLDVRP-----HLLILNKMDLADTSDKMSILKQLERDGVKNVLLTDCLKQRDTSV 119
Query: 118 KEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLR 177
K+ + + + N + + + + +M++G+PNVGKS+L N++ R T +KGK
Sbjct: 120 KKIIPLVTDLIENAPRF-HREENRSYCLMVIGVPNVGKSSLINAI----RRTNLKKGK-- 172
Query: 178 HATVSPQPGETKDIYS-LKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVG 236
+ V +PG TK + + +++ P I++LDTPG+LPP+I ++E KLAL G I D VG
Sbjct: 173 ASRVGGEPGITKAVLTKIQVCERPVIHLLDTPGVLPPKIENIETGMKLALCGTILDHLVG 232
Query: 237 GKELAQYFLGILNFSDEYKKWAKFSI 262
+A Y L LN + ++ +
Sbjct: 233 EDIIADYLLFSLNRPQRFGYVERYDL 258
>gi|335046480|ref|ZP_08539503.1| ribosome biogenesis GTP-binding protein YlqF [Oribacterium sp. oral
taxon 108 str. F0425]
gi|333760266|gb|EGL37823.1| ribosome biogenesis GTP-binding protein YlqF [Oribacterium sp. oral
taxon 108 str. F0425]
Length = 292
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 113/228 (49%), Gaps = 23/228 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HMA A R + + +PLVD I+EV D+R P SS E D L RI++ NK
Sbjct: 5 WYPGHMAKAKRKMKEDLPLVDAIIEVIDSRCPNSSRNPEIDILAKDKA-----RIMLFNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
DLA P + K ++ F +Q + +++ ++ +VK K + L RK S
Sbjct: 60 ADLADPARTKSFMESFQKQGFYTMEMDARSRSSVKGVNKLVMESCAELLERKKQKGILSQ 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
++ M+LGIPNVGKS N+ +G+ TA K PG TK +KI +
Sbjct: 120 SIKAMVLGIPNVGKSTFINAY--VGKATAKTGNK---------PGVTKGAQWIKIGK--D 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ +LDTPGI P+ V LAL G+I D + +EL Y L L
Sbjct: 167 LQLLDTPGITWPKFEREIVGLNLALIGSINDEILPIEELIFYLLKYLT 214
>gi|291543925|emb|CBL17034.1| Ras superfamily GTP-binding protein YlqF [Ruminococcus
champanellensis 18P13]
Length = 290
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 118/244 (48%), Gaps = 27/244 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HM R I + LVD ++E+ DARIP SS E D+L P R+L+LNK
Sbjct: 9 WFPGHMTKTRRMITANLSLVDAVVEILDARIPVSSRNPEMDRLTGGKP-----RLLILNK 63
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEF----LKFLQAHVRNLRKSDYDAS 139
D+A ++W+ + C + ++ + VK+F + L+ + R
Sbjct: 64 SDMADERTTQQWLHRLRRSGCAAVAMDCKSGKGVKQFHPALRELLKEQIAQWRAKGL--V 121
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ + VM++GIPNVGKS+ N + GK A V +PG T+ +K+
Sbjct: 122 NRPIHVMVVGIPNVGKSSFINKMA---------GGK--RAKVEDRPGVTRTKQWVKLGD- 169
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAK 259
+ +LDTPG+L P+ D + +LA TGAI D + + LA L L+ + A+
Sbjct: 170 -GVEMLDTPGVLWPKFDDQQAAQRLAFTGAINDDVLDIEALAMLLLEYLHEAYPQALTAR 228
Query: 260 FSIN 263
+ IN
Sbjct: 229 YKIN 232
>gi|418324108|ref|ZP_12935359.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
pettenkoferi VCU012]
gi|365227605|gb|EHM68797.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
pettenkoferi VCU012]
Length = 289
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 114/241 (47%), Gaps = 51/241 (21%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D++ H P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVVQHKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT- 142
D+A+ + +W F Q V++ H R+L+K + A+ T
Sbjct: 60 KDMANLNELDKWQEHFKAQGYYPVAVDAK--------------HGRSLKKVEQAATEATK 105
Query: 143 ---------------VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGE 187
+ M++GIPNVGKS L N L K A PG
Sbjct: 106 EKFEREKEKGLKPRAIRAMIVGIPNVGKSTLINKL-----------AKKSIAKTGNTPGV 154
Query: 188 TKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGI 247
TK +K+ + +LDTPGIL P+ D V KL++TGAI DS V E+A + L
Sbjct: 155 TKQQQWIKVGKA--LQLLDTPGILWPKFEDETVGKKLSITGAIKDSIVHLDEVAIFGLNF 212
Query: 248 L 248
L
Sbjct: 213 L 213
>gi|227515158|ref|ZP_03945207.1| GTP-binding protein [Lactobacillus fermentum ATCC 14931]
gi|227086490|gb|EEI21802.1| GTP-binding protein [Lactobacillus fermentum ATCC 14931]
Length = 291
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 113/227 (49%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R I ++MPLVDI+ E+ DAR+P+S+ E +++ P R+L++ K
Sbjct: 7 WFPGHMAKALRQIKEQMPLVDIVFELVDARVPYSTQNPEINRMAGDKP-----RLLIMTK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDY--DASSD 141
DLA PT WI +F+Q P ++S K+ Q +++ ++
Sbjct: 62 TDLADPTTTAHWIDYFEQNGQPVLALDSRAHQVAKQVTVKAQQILKDQLAAERAKGMQKR 121
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M +G+PNVGKS L N H + + AA + PG T L+ S +
Sbjct: 122 AIRAMCVGVPNVGKSTLLN--HLVKKNVAATGNR---------PGVTTGQQWLR--SSAD 168
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPG+L P+ LAL+GAI DS ++A + L L
Sbjct: 169 LELLDTPGVLWPKFATQTQAKMLALSGAIKDSLYPKDDVAIFALDYL 215
>gi|440909563|gb|ELR59459.1| Mitochondrial GTPase 1 [Bos grunniens mutus]
Length = 336
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 115/231 (49%), Gaps = 19/231 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRN---HHPFSSSRRILVLNK 83
W+ HMA + + + LVD I+EV DARI F+ RN +LVLNK
Sbjct: 30 WFPGHMAKGLKKMQSSLKLVDCIIEVHDARISFNIPLSG-RNPLFQETLGLKPHLLVLNK 88
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYD---AS 139
MDLA + ++ I +++ + KD NVK+ + V L S Y
Sbjct: 89 MDLADLKEQQKIIRHLEREGIKHVVFTNCVKDENVKQVI----PTVTELVGSSYRYHRGE 144
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIAS 198
+M++G+PNVGKS+L NSL R KGK V +PG T+ + S +++
Sbjct: 145 HVEYCIMVIGVPNVGKSSLINSL----RRQHLRKGK--ATRVGGEPGITRAVMSRIQVCE 198
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
P +++LDTPG+L P I VE KLAL G + D VG + LA + L LN
Sbjct: 199 RPLMFLLDTPGVLAPRIPSVETGLKLALCGTVLDHLVGEETLADFLLYTLN 249
>gi|373471022|ref|ZP_09562101.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
gi|371761215|gb|EHO49849.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
Length = 279
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 121/262 (46%), Gaps = 32/262 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A RA++D + LVDII+E+ DAR P ++ ++ S RI++LNK DL
Sbjct: 5 WYPGHMTKAKRAMSDAIKLVDIIIEMTDARAPEATRNPEIMGLGTGKS--RIIILNKADL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SDTVT 144
A W +++ +Q ++S K+ V +K ++ ++ R+ D + V
Sbjct: 63 ADENANIRWASYYKEQGYECMFMDSRQKNGVNSLIKAIENVSKDKRERDAKRGIKNRPVR 122
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M+ GIPNVGKS L N++ GR A K PG TK +K+ + +
Sbjct: 123 AMVAGIPNVGKSTLINTVS--GRAMAKTGNK---------PGVTKGNQWIKLKGQ--VEL 169
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
LDTPGIL P+ D V +A G+I D + +EL + KW
Sbjct: 170 LDTPGILWPKFEDERVGEMIAFIGSINDMIIDIRELGLELI----------KWL-----L 214
Query: 265 INKPLTLHHKADQSSGSESGMI 286
N+P L + D G + +
Sbjct: 215 KNRPEVLEERFDIKEGEDENAV 236
>gi|331091008|ref|ZP_08339850.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 2_1_46FAA]
gi|330405230|gb|EGG84766.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 2_1_46FAA]
Length = 283
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 112/228 (49%), Gaps = 23/228 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A R + + + L+D+++E+ DARIP SS + D+L + R+++LNK
Sbjct: 5 WYPGHMTKAKRMMQENIKLIDLVIELVDARIPMSSRNPDIDELGKNKA-----RLILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DLA Q W +F + VNS +K +Q + + D +
Sbjct: 60 SDLAEDRQTDAWAEYFRGKGYSVVKVNSKKGGGIKSIQGVIQEACKEKIERDRKRGILNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M++GIPNVGKS N+L G+ A K PG TK +++ + N
Sbjct: 120 PVRAMVVGIPNVGKSTFINALA--GKACAKTGNK---------PGVTKGKQWIRL--NKN 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ +LDTPGIL P+ D +V KLA G+I D + +ELA + LN
Sbjct: 167 VELLDTPGILWPKFEDQQVGLKLAFIGSIKDEILNTEELAGELIKFLN 214
>gi|184155372|ref|YP_001843712.1| GTPase [Lactobacillus fermentum IFO 3956]
gi|260662115|ref|ZP_05863011.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
fermentum 28-3-CHN]
gi|183226716|dbj|BAG27232.1| GTPase [Lactobacillus fermentum IFO 3956]
gi|260553498|gb|EEX26390.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
fermentum 28-3-CHN]
Length = 290
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 113/227 (49%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R I ++MPLVDI+ E+ DAR+P+S+ E +++ P R+L++ K
Sbjct: 6 WFPGHMAKALRQIKEQMPLVDIVFELVDARVPYSTQNPEINRMAGDKP-----RLLIMTK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDY--DASSD 141
DLA PT WI +F+Q P ++S K+ Q +++ ++
Sbjct: 61 TDLADPTTTAHWIDYFEQNGQPVLALDSRAHQVAKQVTVKAQQILKDQLAAERAKGMQKR 120
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M +G+PNVGKS L N H + + AA + PG T L+ S +
Sbjct: 121 AIRAMCVGVPNVGKSTLLN--HLVKKNVAATGNR---------PGVTTGQQWLR--SSAD 167
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPG+L P+ LAL+GAI DS ++A + L L
Sbjct: 168 LELLDTPGVLWPKFATQTQAKMLALSGAIKDSLYPKDDVAIFALDYL 214
>gi|386714315|ref|YP_006180638.1| ribosomal biogenesis GTPase [Halobacillus halophilus DSM 2266]
gi|384073871|emb|CCG45364.1| ribosomal biogenesis GTPase [Halobacillus halophilus DSM 2266]
Length = 280
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 112/225 (49%), Gaps = 19/225 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA A R ++ + LVD ++E+ DAR P SS+ L+ +++VL K DL
Sbjct: 5 WYPGHMAKAKREASENLKLVDFVIELVDARAPLSSQNPMLQGI--LGDKPKMMVLMKKDL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASS---DTV 143
A P KEW+ F + PS + ++NK +++ + L + N + A
Sbjct: 63 ADPKVTKEWLEHFKENGFPSIAIEANNKQDIQAVIN-LGKSIGNEKIEKLKAKGVRPRAS 121
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M+LGIPNVGKS L N L A K A +PG TK +K+ + ++
Sbjct: 122 RAMILGIPNVGKSTLINRL--------ANKS---IAKTGDKPGVTKKQQWIKVKNEFDL- 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
LDTPGIL P+ + EV +LA G I D + +++A Y L L
Sbjct: 170 -LDTPGILWPKFEEEEVGYRLASIGTIKDQILPTEDVAAYVLDYL 213
>gi|310641521|ref|YP_003946279.1| GTPase [Paenibacillus polymyxa SC2]
gi|309246471|gb|ADO56038.1| GTPase family protein [Paenibacillus polymyxa SC2]
Length = 289
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 116/233 (49%), Gaps = 36/233 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A R I ++ L+D+++E+ DAR+P SS D + P R+++LNK
Sbjct: 8 WFPGHMTRARRQIEAKLKLIDLVIELIDARLPLSSRNPMIDDILQGKP-----RMIILNK 62
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT- 142
DLA P ++WI +F +Q +F V++ +KE +QA + K D S
Sbjct: 63 ADLADPVVSQQWIAYFKEQGHVAFPVDATTGTGLKEIP--VQAKLLLKEKIDRQISKGMN 120
Query: 143 ---VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ +++GIPNVGKS L N + GR AA +PG TK +K
Sbjct: 121 PRPIRALIVGIPNVGKSTLINRMA--GRNIAA---------TGDRPGVTKAQQWIKTGE- 168
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGD--------SFVGGKELAQYF 244
I +LDTPGIL P+ D V +LA+TGAI + +F K L QY+
Sbjct: 169 --IELLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNVEDIAFFATKYLVQYY 219
>gi|421275900|ref|ZP_15726727.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA52612]
gi|395872320|gb|EJG83419.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA52612]
Length = 273
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 115/226 (50%), Gaps = 21/226 (9%)
Query: 32 MAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ 91
M+ A R + + + VD + + DAR+P SS+ L ++L+LNK DLA P
Sbjct: 1 MSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADLADPAM 58
Query: 92 FKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTVTVMLL 148
KEW +F+ Q + +NS + VK + K L A + R+ + +T+ M++
Sbjct: 59 TKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIQIETLRTMII 117
Query: 149 GIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTP 208
GIPN GKS L N L GK + A V +PG TK LK ++ ++ +LDTP
Sbjct: 118 GIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLEILDTP 164
Query: 209 GILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
GIL P+ D V KLALTGAI D + E+ + GI F + Y
Sbjct: 165 GILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GINYFKEHY 208
>gi|145527192|ref|XP_001449396.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416984|emb|CAK81999.1| unnamed protein product [Paramecium tetraurelia]
Length = 286
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 116/241 (48%), Gaps = 15/241 (6%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + R+ V + LE+RDAR+PFSS+ FD L H + +I++ NK
Sbjct: 9 WYPGHMKRAMEHLEKRITDVQLFLELRDARVPFSSKNYHFDNLMQAH---NKEKIIIFNK 65
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTV 143
DL + + I + + ++ + N++E + + N KS A+ +
Sbjct: 66 FDLCNQDITNKIIEKYKKVGIQCIATSARERLNLRELI-----MMTNTYKSAKFATVG-M 119
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
+M+ G+PNVGKS + N L Q T + A + P TK++ +KI P Y
Sbjct: 120 WLMICGMPNVGKSTIINQLRQT---TPKLNKRKALAKSTASPCTTKNVAGIKICDEPLAY 176
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSIN 263
++DTPG++ P I + E KL L G I D V + + Y + +N K + + +N
Sbjct: 177 LVDTPGVMIPNITEEEQGLKLGLVGCIKDKIVTKERMLDYLVREMNQQQMEKYYKIYGLN 236
Query: 264 Q 264
Q
Sbjct: 237 Q 237
>gi|451818144|ref|YP_007454345.1| ribosome biogenesis GTPase A [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451784123|gb|AGF55091.1| ribosome biogenesis GTPase A [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 288
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 119/248 (47%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HM R I + + LVD ++E+RDARIP SS + ++L P RI++LNK
Sbjct: 5 WFPGHMKKTQREIKENLKLVDAVIEIRDARIPRSSANPDIEKLLEGKP-----RIILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
DL KEWI + VN D LK ++ + NL K +D
Sbjct: 60 SDLTDSNVTKEWIDYLTNDIVRVLEVNCLKGDG----LKNIKPMLLNLLKEKHDRLRAKG 115
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ + VM++GIPNVGKS N ++ R A+ G +PG TK +K
Sbjct: 116 MVNIMMRVMVVGIPNVGKSTFIN---KMARNNIAKTGD--------RPGVTKSKQWIKTG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ I +LDTPG+L P+ D E LA TGAI D + +ELA + L S E K
Sbjct: 165 A--GIELLDTPGVLWPKFEDDETALNLAFTGAIKDEIMDIEELALKLVDRLQESYEAKLK 222
Query: 258 AKFSINQI 265
++ + ++
Sbjct: 223 ERYKLTEV 230
>gi|334135573|ref|ZP_08509057.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
HGF7]
gi|333606909|gb|EGL18239.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
HGF7]
Length = 290
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 111/217 (51%), Gaps = 29/217 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A R I D++ L+D+ +E+ DARIP SS D + P R+++LNK
Sbjct: 5 WFPGHMTRARRQIEDKLKLIDVAIELLDARIPMSSRNPMVDDILKGKP-----RLVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRN-LRKSDYDA 138
DLA P EW+ +F Q + +++ + VKE L + + A + LRK
Sbjct: 60 ADLADPAITAEWVKYFTDQGLKALPIDASSGTGVKEILPRCKELMSAKIETQLRKG---I 116
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
+ + +++GIPNVGKS L N L GR + A +PG TK +K +
Sbjct: 117 NPRAIRGLIVGIPNVGKSTLINQLA--GR---------KIANTGDKPGVTKGQQWIKFGT 165
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFV 235
++ +LDTPGIL P+ D V KLA TGAI + +
Sbjct: 166 --DMDLLDTPGILWPKFDDQNVGMKLAATGAIKEEIL 200
>gi|452974492|gb|EME74312.1| GTPase YlqF [Bacillus sonorensis L12]
Length = 282
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 109/228 (47%), Gaps = 25/228 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ L+DI+ E+ DARIP SS + + + RI++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI--LKNKPRIMLLNKADK 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ASS 140
A EW F+ PS +NS N + + L + L K +D
Sbjct: 63 ADSAVTNEWKKHFEADGIPSLAINSVNGQGLNQIL----PASKELLKEKFDKMKAKGVKP 118
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ +++GIPNVGKS L N L K A +PG T +K+
Sbjct: 119 RAIRALIVGIPNVGKSTLINRL-----------AKKNIAKTGDRPGVTTAQQWVKVGKE- 166
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P+ D V KLA TGAI DS + +++A + L L
Sbjct: 167 -LELLDTPGILWPKFEDELVGLKLAATGAIKDSIINLQDVAVFGLRFL 213
>gi|386040552|ref|YP_005959506.1| GTP-binding protein engA [Paenibacillus polymyxa M1]
gi|343096590|emb|CCC84799.1| GTP-binding protein engA [Paenibacillus polymyxa M1]
Length = 286
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 116/233 (49%), Gaps = 36/233 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A R I ++ L+D+++E+ DAR+P SS D + P R+++LNK
Sbjct: 5 WFPGHMTRARRQIEAKLKLIDLVIELIDARLPLSSRNPMIDDILQGKP-----RMIILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT- 142
DLA P ++WI +F +Q +F V++ +KE +QA + K D S
Sbjct: 60 ADLADPVVSQQWIAYFKEQGHVAFPVDATTGTGLKEIP--VQAKLLLKEKIDRQISKGMN 117
Query: 143 ---VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ +++GIPNVGKS L N + GR AA +PG TK +K
Sbjct: 118 PRPIRALIVGIPNVGKSTLINRMA--GRNIAA---------TGDRPGVTKAQQWIKTGE- 165
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGD--------SFVGGKELAQYF 244
I +LDTPGIL P+ D V +LA+TGAI + +F K L QY+
Sbjct: 166 --IELLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNVEDIAFFATKYLVQYY 216
>gi|422758930|ref|ZP_16812692.1| ribosomal biogenesis GTPase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322411765|gb|EFY02673.1| ribosomal biogenesis GTPase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 282
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 116/232 (50%), Gaps = 23/232 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A T+ KEW ++ Q + +NS + VK E K L A ++ LR + +T
Sbjct: 64 ADATRTKEWKAYYKSQGIKTLAINSKEQSTVKKVTEAAKELMADKIQRLR--NRGIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI + + E+ G+ F Y
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKNQLLPMDEVT--IFGLNYFKTHY 218
>gi|295692914|ref|YP_003601524.1| GTP-binding protein [Lactobacillus crispatus ST1]
gi|295031020|emb|CBL50499.1| GTP-binding protein [Lactobacillus crispatus ST1]
Length = 279
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 123/246 (50%), Gaps = 25/246 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + D++ L+D+++EV DARIP +S ++L + P I++LNK
Sbjct: 6 WYPGHMNKARNQLEDKLGLIDVLVEVLDARIPQASRNPMIEELVGNKP-----HIIILNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
DLA P K W N ++S + N+++ + ++ + AS+
Sbjct: 61 ADLADPVLTKAWAAELAGDNKYVLALDSLHNTNMQKLVSLVKKAAAAKTEKLEARGASNP 120
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
T+ + L GIPN GKS + N L +GR A V +PG TK LK ++ N
Sbjct: 121 TIRIALAGIPNCGKSTVINRL--VGR---------NVAEVGNKPGVTKGQRWLK--TNAN 167
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKWAK 259
I VLDTPGIL P+ D EV KLA GAI DS ++A + L L ++ + K++K
Sbjct: 168 IQVLDTPGILWPKFSDQEVGYKLAAFGAIKDSVFHADDVALFVLKNLREFYAKDLLKFSK 227
Query: 260 FSINQI 265
QI
Sbjct: 228 LPEQQI 233
>gi|154686021|ref|YP_001421182.1| ribosomal biogenesis GTPase [Bacillus amyloliquefaciens FZB42]
gi|384265188|ref|YP_005420895.1| GTP-binding protein engA [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385264731|ref|ZP_10042818.1| ribosomal biogenesis GTPase [Bacillus sp. 5B6]
gi|387898184|ref|YP_006328480.1| ribosomal biogenesis GTPase [Bacillus amyloliquefaciens Y2]
gi|154351872|gb|ABS73951.1| YlqF [Bacillus amyloliquefaciens FZB42]
gi|380498541|emb|CCG49579.1| GTP-binding protein engA [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385149227|gb|EIF13164.1| ribosomal biogenesis GTPase [Bacillus sp. 5B6]
gi|387172294|gb|AFJ61755.1| ribosomal biogenesis GTPase [Bacillus amyloliquefaciens Y2]
Length = 282
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 124/253 (49%), Gaps = 41/253 (16%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+DI+ E+ DARIP SS +++ + P RI++LNK
Sbjct: 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEEILKNKP-----RIMLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNV-------KEFL--KFLQAHVRNLRKS 134
D A +W F +Q PS +NS N + KE L KF + + +R
Sbjct: 60 ADKADAAVTAQWKDHFQEQGIPSLSINSVNGQGLHQIVPSSKELLKDKFDKMKAKGIRPR 119
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ +++GIPNVGKS L N L K A +PG T +
Sbjct: 120 -------AIRALIIGIPNVGKSTLINRL-----------AKKNIAKTGDRPGITTSQQWV 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSD 252
K+ + +LDTPGIL P+ D V +LA+TGAI D+ + +++A + L L + D
Sbjct: 162 KVGKE--LELLDTPGILWPKFEDELVGLRLAITGAIKDTIINLQDVAVFGLRFLEEHYPD 219
Query: 253 EYKKWAKFSINQI 265
K+ ++ + +I
Sbjct: 220 RLKE--RYGLQEI 230
>gi|440683100|ref|YP_007157895.1| ribosome biogenesis GTP-binding protein YlqF [Anabaena cylindrica
PCC 7122]
gi|428680219|gb|AFZ58985.1| ribosome biogenesis GTP-binding protein YlqF [Anabaena cylindrica
PCC 7122]
Length = 293
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 114/229 (49%), Gaps = 17/229 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H+A A + + +++ VD+ILEVRDARIP ++ Q+ RILV+N++D+
Sbjct: 14 WYPGHIAKAEKNLKEQLKRVDVILEVRDARIPLATNHPQMNEW--VGDKSRILVINRLDM 71
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAH--VRNLRKSDYDASSDTVT 144
P W +F Q + N+ + + K QA N R+ D V
Sbjct: 72 ILPQVRSHWTDWFKNQEQIPYFTNAQHGQGITAITKAAQAAGIALNQRRKDRGMLPRAVR 131
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
+++G PNVGKSAL N L +G+ A + + PG T+ + ++I+ + +
Sbjct: 132 AVVIGFPNVGKSALINRL--LGKRVVASEAR---------PGVTRQLRWVRISDQ--LQL 178
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDE 253
LD PG++P + + + KLA+ IG++ + +A F+ I+N E
Sbjct: 179 LDAPGVIPSRMENQDAAVKLAICDDIGEASYDNQLIAAAFVDIVNQLQE 227
>gi|421860563|ref|ZP_16292669.1| predicted GTPase [Paenibacillus popilliae ATCC 14706]
gi|410829749|dbj|GAC43106.1| predicted GTPase [Paenibacillus popilliae ATCC 14706]
Length = 296
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 117/233 (50%), Gaps = 23/233 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM A R I +++ L+D+ +E+ DAR+P SS + + + R+++LNK DL
Sbjct: 5 WFPGHMTRARRQIQEKLKLIDVAIELLDARLPMSSRNPMIGDI--LQNKPRLILLNKADL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK----EFLKFLQAHVRNLRKSDYDASSDT 142
A P +W+ F + + +++ NV E K L+ ++ R+
Sbjct: 63 ADPDMNAQWLQAFRGEGHAALAIDASTGTNVAQIPGEARKLLEEKIQ--RQLAKGMKPRP 120
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
V +++GIPNVGKS L N L GR AA +PG TK +K+ +
Sbjct: 121 VRALIVGIPNVGKSTLINKLA--GRSVAA---------TGDRPGITKGQQWIKVGFE--M 167
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYK 255
+LDTPGIL P+ D EV +LA TGAI D + +E+A Y I +D Y+
Sbjct: 168 ELLDTPGILWPKFEDQEVGYRLAATGAIKDEILNVEEIAFYV--IKQLADPYR 218
>gi|150016065|ref|YP_001308319.1| ribosomal biogenesis GTPase [Clostridium beijerinckii NCIMB 8052]
gi|149902530|gb|ABR33363.1| GTP-binding protein, HSR1-related [Clostridium beijerinckii NCIMB
8052]
Length = 287
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 118/244 (48%), Gaps = 23/244 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HM R I + + LVD ++E+RDARIP SS + ++L P RI++LNK
Sbjct: 5 WFPGHMKKTQREIKENLKLVDAVIEIRDARIPRSSANPDIEKLLEGKP-----RIILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
DL KEWI + + + VN D +K L A ++ R +
Sbjct: 60 SDLTDGKVTKEWINYLTKDDVKVLEVNCLKGDGLKNIKPTLLALLKEKHDRLKAKGMVNI 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
T+ VM++GIPNVGKS N ++ R A+ G +PG TK +K +
Sbjct: 120 TMRVMVVGIPNVGKSTFIN---KMARNNIAKTG--------DRPGVTKSKQWIK--TGIG 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
I +LDTPG+L P D E LA TGAI D + +ELA + L + E K ++
Sbjct: 167 IEMLDTPGVLWPRFEDDETALNLAFTGAIKDEIMDIEELALKLVEKLQSNYEEKLKERYK 226
Query: 262 INQI 265
+ ++
Sbjct: 227 LKEV 230
>gi|419718995|ref|ZP_14246289.1| ribosome biogenesis GTP-binding protein YlqF [Lachnoanaerobaculum
saburreum F0468]
gi|383304864|gb|EIC96255.1| ribosome biogenesis GTP-binding protein YlqF [Lachnoanaerobaculum
saburreum F0468]
Length = 281
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 119/262 (45%), Gaps = 32/262 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A RA++D + LVDII+E+ DAR P + ++ S RI++LNK DL
Sbjct: 5 WYPGHMTKAKRAMSDVIKLVDIIIEMTDARAPEAGRNPEITELGADKS--RIIILNKADL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SDTVT 144
A+ W +F+ +Q ++S + V +K ++ + R+ D + V
Sbjct: 63 ANELANNRWASFYKEQGYECMFMDSRKNNGVGVLIKAIENVSKKKRERDAKRGIKNRPVR 122
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M+ GIPNVGKS L NS+ GR A K PG TK +K+ I +
Sbjct: 123 AMVAGIPNVGKSTLINSVS--GRAMAKTGNK---------PGVTKGNQWIKLKGQ--IEL 169
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
LDTPGIL P+ D V +A G+I D + +EL + KW
Sbjct: 170 LDTPGILWPKFEDERVGEMIAFIGSINDMIIDIRELGLELI----------KWL-----L 214
Query: 265 INKPLTLHHKADQSSGSESGMI 286
NKP L + D G + +
Sbjct: 215 KNKPEVLQERFDIKDGDDENAV 236
>gi|253573502|ref|ZP_04850845.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251847030|gb|EES75035.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 287
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 116/220 (52%), Gaps = 23/220 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A R I +++ L+D+++E+ DAR+P SS D++ P R++VLNK
Sbjct: 5 WFPGHMTKARRQIQEKLKLIDVVIELLDARLPLSSRNPMIDEILQGKP-----RLIVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV--RNLRKSDYDASSD 141
DLA P ++WI +F ++ + ++ + +KE + + + R ++
Sbjct: 60 SDLADPAVTRQWIAYFKEEGHLAVEADAASGQGLKEIPRLAKELLKERIEKQIAKGIKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V +++GIPNVGKS L N L GR AA +PG TK +K+ +
Sbjct: 120 AVRALIVGIPNVGKSTLINGLA--GRKIAA---------TGDRPGVTKGQQWIKVGTE-- 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELA 241
+ +LDTPGIL P+ D V +LA+TGAI + + +++A
Sbjct: 167 MELLDTPGILWPKFEDQNVGYRLAVTGAIREEILNVEDIA 206
>gi|402312857|ref|ZP_10831780.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium ICM7]
gi|400367433|gb|EJP20449.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium ICM7]
Length = 279
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 114/225 (50%), Gaps = 21/225 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A RA++D + LVDII+E+ DAR P ++ ++ S+ RI++LNK DL
Sbjct: 5 WYPGHMTKAKRAMSDAIKLVDIIIEMTDARAPEATRNPEI--MELGSNKSRIIILNKADL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD--ASSDTVT 144
+ + W + + +Q ++S K+ V +K ++ ++ R+ D + V
Sbjct: 63 SDESANNRWASHYKEQGYECMFMDSRKKNGVNVLIKAIENVSKDKRERDAKRGIKNRPVR 122
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M+ GIPNVGKS L NS+ GR A K PG TK +K+ I +
Sbjct: 123 AMVAGIPNVGKSTLINSVS--GRAMAKTGNK---------PGVTKGNQWIKLKGQ--IEL 169
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVG----GKELAQYFL 245
LDTPGIL P+ D + +A G+I D + G EL ++F+
Sbjct: 170 LDTPGILWPKFEDENIGEMIAFIGSINDMIIDIRELGLELIKWFI 214
>gi|92113475|ref|YP_573403.1| GTP-binding protein [Chromohalobacter salexigens DSM 3043]
gi|91796565|gb|ABE58704.1| GTP-binding protein [Chromohalobacter salexigens DSM 3043]
Length = 319
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 122/253 (48%), Gaps = 42/253 (16%)
Query: 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLN 82
GWY HM A R I + +P +D++LEV DAR+P+SS +L H P + VL+
Sbjct: 3 GWYPGHMHKARRQIKEALPEIDVVLEVLDARLPYSSANPMLAELTEHKPV-----LKVLS 57
Query: 83 KMDLASPTQFKEWITFFDQQ-NCPSFGVNSHNKDNVKEFLKF---LQAHVRNLRKSDYDA 138
+ DLA P Q + W+ +F+++ + + V + +K L HVR +D D
Sbjct: 58 RADLADPEQTERWVAYFNERPDTRALAVTTTQARELKRIPALCHELAGHVR----ADRD- 112
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
V VM++GIPNVGKS L N L GK + A +P TK +++
Sbjct: 113 ----VRVMVMGIPNVGKSTLINGL----------AGK-KIAKTGNEPAVTKRQQKIRLDG 157
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDS--------FVGGKELAQYFLGILNF 250
+ ++DTPG+L P+I D +LA +GAI D+ V ELA+ + L
Sbjct: 158 --RVALIDTPGVLWPKIEDQASAYRLAASGAIRDTAMEYSDVAIVAAAELAKRYPEALKA 215
Query: 251 SDEYKKWAKFSIN 263
+ K ++ N
Sbjct: 216 RYKLKTLPSYAPN 228
>gi|314936594|ref|ZP_07843941.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
hominis subsp. hominis C80]
gi|313655213|gb|EFS18958.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
hominis subsp. hominis C80]
Length = 294
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 112/227 (49%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R + +++ VD++ E+ DARIP+SS D + P R+++LNK
Sbjct: 5 WYPGHMAKAKREVTEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK--EFLKFLQAHVRNLRKSDYDASSD 141
D+++ + ++W FF + V++ + N+K E + ++
Sbjct: 60 KDMSNLNEMQKWEYFFTDKGFYPVAVDAKHGKNLKGVENAAIEATKEKFEKEKAKGLKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS L N L K A +PG TK +K+
Sbjct: 120 AIRAMIVGIPNVGKSTLINKL-----------AKKNIAQTGNKPGVTKQQQWIKVGKA-- 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P+ D V KL+LTGAI DS V E+A Y L L
Sbjct: 167 LQLLDTPGILWPKFEDETVGKKLSLTGAIKDSIVHLDEVAIYGLQFL 213
>gi|375308199|ref|ZP_09773486.1| gtpase family protein [Paenibacillus sp. Aloe-11]
gi|375080530|gb|EHS58751.1| gtpase family protein [Paenibacillus sp. Aloe-11]
Length = 288
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 118/230 (51%), Gaps = 32/230 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A R I ++ L+D+++E+ DAR+P SS D + P R+++LNK
Sbjct: 7 WFPGHMTRARRQIEAKLKLIDLVIELIDARLPLSSRNPMIDDILQGKP-----RMIILNK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT- 142
DLA P ++WI +F +Q +F V++ +KE +QA + K D S
Sbjct: 62 ADLADPVVSQQWIAYFKEQGHVAFQVDATTGTGMKEIP--VQAKLLLKEKIDRQISKGMN 119
Query: 143 ---VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ +++GIPNVGKS L N + GR AA +PG TK +K
Sbjct: 120 PRPIRALIVGIPNVGKSTLINRMA--GRNIAA---------TGDRPGVTKAQQWIKTGE- 167
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELA----QYFL 245
I +LDTPGIL P+ D V +LA+TGAI + + +++A +YF+
Sbjct: 168 --IELLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNVEDIAFFATKYFV 215
>gi|322795649|gb|EFZ18328.1| hypothetical protein SINV_02998 [Solenopsis invicta]
Length = 322
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 122/250 (48%), Gaps = 24/250 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIP-------FSSEFDQLRNHHPFSSSRRIL 79
W+ HM R + R+ +D ILEV DARIP FS L+ H I
Sbjct: 24 WFPGHMTKGLRQMQQRLKNIDCILEVHDARIPISGHYADFSRTLTGLKPH--------IF 75
Query: 80 VLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD-YDA 138
VL+K DLA K ++ +++ + + + + + L + + KS Y+
Sbjct: 76 VLSKKDLADTRHTKTIVSTLNREGLSNIIFTNLKDEQCRGMKQILPLAKKLILKSQRYNR 135
Query: 139 SSD-TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKI 196
+ + + ++M++G+PNVGKS+L N L R GK H V G T+ + + +KI
Sbjct: 136 TEEESYSMMVIGVPNVGKSSLINRL----RSNHLHLGKATH--VGATAGITRSVLTHIKI 189
Query: 197 ASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKK 256
+ P +Y++DTPGIL P I D+ KLAL G + D VG LA Y L LN ++ ++
Sbjct: 190 SEDPAVYLIDTPGILAPSIKDIHAGFKLALVGCLQDHIVGSYLLADYLLFWLNKNNRFEY 249
Query: 257 WAKFSINQIN 266
K + + N
Sbjct: 250 VEKLGLPEPN 259
>gi|394993944|ref|ZP_10386683.1| GTPase YlqF [Bacillus sp. 916]
gi|429505157|ref|YP_007186341.1| GTPase YlqF [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|452855551|ref|YP_007497234.1| ribosome biogenesis GTPase A [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|393805268|gb|EJD66648.1| GTPase YlqF [Bacillus sp. 916]
gi|429486747|gb|AFZ90671.1| GTPase YlqF [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|452079811|emb|CCP21569.1| ribosome biogenesis GTPase A [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 282
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 124/253 (49%), Gaps = 41/253 (16%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+DI+ E+ DARIP SS +++ + P RI++LNK
Sbjct: 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEEILKNKP-----RIMLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNV-------KEFL--KFLQAHVRNLRKS 134
D A +W F +Q PS +NS N + KE L KF + + +R
Sbjct: 60 ADKADAAVTAQWKDHFQEQGIPSLSINSVNGQGLHQIVPSSKELLKDKFDKMKAKGVRPR 119
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ +++GIPNVGKS L N L K A +PG T +
Sbjct: 120 -------AIRALIIGIPNVGKSTLINRL-----------AKKNIAKTGDRPGITTSQQWV 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSD 252
K+ + +LDTPGIL P+ D V +LA+TGAI D+ + +++A + L L + D
Sbjct: 162 KVGKE--LELLDTPGILWPKFEDELVGLRLAITGAIKDTIINLQDVAVFGLRFLEEHYPD 219
Query: 253 EYKKWAKFSINQI 265
K+ ++ + +I
Sbjct: 220 RLKE--RYGLQEI 230
>gi|384861837|ref|YP_005744557.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|302751066|gb|ADL65243.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
str. JKD6008]
Length = 285
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 116/229 (50%), Gaps = 37/229 (16%)
Query: 32 MAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNKMDLAS 88
MA A R +++++ VD++ E+ DARIP+SS D++ N P R+++LNK D+++
Sbjct: 1 MAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKP-----RVVILNKKDMSN 55
Query: 89 PTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKSDYDAS 139
+ +W FF + V++ + N+K+ KF + + L+
Sbjct: 56 LNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPR----- 110
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS L N L K A +PG TK +K+ +
Sbjct: 111 --AIRAMIVGIPNVGKSTLINKL-----------AKRSIAQTGNKPGVTKQQQWIKVGNA 157
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P+ D EV KL+LTGAI DS V E+A Y L L
Sbjct: 158 --LQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFL 204
>gi|384175346|ref|YP_005556731.1| YlqF [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|349594570|gb|AEP90757.1| YlqF [Bacillus subtilis subsp. subtilis str. RO-NN-1]
Length = 282
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 21/227 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ L+DI+ E+ DARIP SS + + + RI++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI--LKNKPRIMLLNKADK 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASSDT 142
A ++W F++Q S +NS N + + + + LQ +R +
Sbjct: 63 ADAVVTQQWKEHFEKQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRA-- 120
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ +++GIPNVGKS L N L K A +PG T +K+ +
Sbjct: 121 IRALIIGIPNVGKSTLINRL-----------AKKNIAKTGDRPGITTSQQWVKVGKE--L 167
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+LDTPGIL P+ D V +LA+TGAI DS + +++A + L L
Sbjct: 168 ELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLE 214
>gi|301786663|ref|XP_002928747.1| PREDICTED: mitochondrial GTPase 1-like [Ailuropoda melanoleuca]
Length = 451
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 113/221 (51%), Gaps = 23/221 (10%)
Query: 37 RAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNKMDLASPTQFK 93
R + + LVD I+EV DARIP S F + P +LVLNKMDLA + +
Sbjct: 159 RKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPH-----VLVLNKMDLADLKEQQ 213
Query: 94 EWITFFDQQNCPSFG-VNSHNKDNVKEFLKFLQAHVRNLRKSDYD---ASSDTVTVMLLG 149
+ I + + + N +N+K+ + VR L +S Y S M++G
Sbjct: 214 KIIQHLEGKGLKNVVFTNCVRDENIKQVIPM----VRGLVESSYRYHRGESLEYCAMVIG 269
Query: 150 IPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYVLDTP 208
IPNVGKS+L N+L R +GK V +PG T+ + S +++ P +++LDTP
Sbjct: 270 IPNVGKSSLINAL----RRQHLRRGK--ATRVGGEPGITRAVMSRIQVCERPLMFLLDTP 323
Query: 209 GILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
G+L P I VE+ KLAL G + D VG + LA Y L LN
Sbjct: 324 GVLAPRIASVEMGLKLALCGTVLDHLVGEETLADYLLYTLN 364
>gi|160939136|ref|ZP_02086487.1| hypothetical protein CLOBOL_04030 [Clostridium bolteae ATCC
BAA-613]
gi|158438099|gb|EDP15859.1| hypothetical protein CLOBOL_04030 [Clostridium bolteae ATCC
BAA-613]
Length = 288
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 112/227 (49%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A RA+ + M L+D+++E+ DAR+P SS + D L + R+++LNK
Sbjct: 5 WYPGHMTKAKRAMKEDMKLIDLVIELVDARVPLSSRNPDIDDL-----GAGKARMVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DLA Q W +F+ + V++ NK +K+ +Q + + D +
Sbjct: 60 SDLADERQNARWAAWFEDKGIHVVKVDARNKGTLKQVQSVIQEACKEKIERDRRRGILNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS NS GK A +PG TK +++ +
Sbjct: 120 PIRTMVVGIPNVGKSTFINSFA----------GKA-CAKTGNKPGVTKGNQWIRL--NKT 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P D +V KLAL G+I D + ELA + L
Sbjct: 167 LELLDTPGILWPRFEDQQVGLKLALIGSINDQILNKDELACELIRFL 213
>gi|89098663|ref|ZP_01171545.1| GTPase family protein [Bacillus sp. NRRL B-14911]
gi|89086625|gb|EAR65744.1| GTPase family protein [Bacillus sp. NRRL B-14911]
Length = 281
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 111/227 (48%), Gaps = 31/227 (13%)
Query: 32 MAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNKMDLAS 88
MA A R + +++ LVDII E+ DAR+P SS D++ H P R+++LNK D+A
Sbjct: 1 MAKARRQVTEKLKLVDIIFELVDARLPQSSRNPMIDEIIQHKP-----RLVLLNKADMAD 55
Query: 89 PTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ASSDT 142
K WI +F + + +NS +K+ + + + + K +D
Sbjct: 56 KEATKAWIRYFSDRGIKALAINSQAGSGMKD----ISSAAQEILKEKFDRMRAKGVKPRA 111
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS L N L K A PG TK +K +
Sbjct: 112 IRGMIVGIPNVGKSTLINRL-----------AKKNIAKTGNMPGVTKAQQWIKAGKE--M 158
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+LDTPGIL P+ D EV KLAL+GAI D+ + ++A Y L L
Sbjct: 159 ELLDTPGILWPKFEDQEVGLKLALSGAIKDTILNLHDIAIYALKFLE 205
>gi|375362249|ref|YP_005130288.1| GTP-binding protein engA [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|421731725|ref|ZP_16170848.1| GTPase YlqF [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|451347024|ref|YP_007445655.1| GTPase YlqF [Bacillus amyloliquefaciens IT-45]
gi|371568243|emb|CCF05093.1| GTP-binding protein engA [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|407073938|gb|EKE46928.1| GTPase YlqF [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|449850782|gb|AGF27774.1| GTPase YlqF [Bacillus amyloliquefaciens IT-45]
Length = 282
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 124/253 (49%), Gaps = 41/253 (16%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+DI+ E+ DARIP SS +++ + P RI++LNK
Sbjct: 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEEILKNKP-----RIMLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNV-------KEFL--KFLQAHVRNLRKS 134
D A +W F +Q PS +NS N + KE L KF + + +R
Sbjct: 60 ADKADAAVTAQWKDHFQEQGIPSLSINSVNGQGLHQIVPSSKELLKDKFDKMKAKGVRPR 119
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ +++GIPNVGKS L N L K A +PG T +
Sbjct: 120 -------AIRALIIGIPNVGKSTLINRL-----------AKKNIAKTGDRPGITTSQQWV 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSD 252
K+ + +LDTPGIL P+ D V +LA+TGAI D+ + +++A + L L + D
Sbjct: 162 KVGKE--LELLDTPGILWPKFEDELVGLRLAITGAIKDTIINLQDVAVFGLRFLEEHYPD 219
Query: 253 EYKKWAKFSINQI 265
K+ ++ + +I
Sbjct: 220 RLKE--RYGLQEI 230
>gi|404483942|ref|ZP_11019157.1| ribosome biogenesis GTP-binding protein YlqF [Clostridiales
bacterium OBRC5-5]
gi|404342954|gb|EJZ69323.1| ribosome biogenesis GTP-binding protein YlqF [Clostridiales
bacterium OBRC5-5]
Length = 279
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 113/225 (50%), Gaps = 21/225 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A RA++D + LVDII+E+ DAR P ++ ++ S+ RI++LNK DL
Sbjct: 5 WYPGHMTKAKRAMSDAIKLVDIIIEMTDARAPEATRNPEI--MELGSNKSRIIILNKADL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD--ASSDTVT 144
+ + W + + +Q ++S K+ V +K ++ + R+ D + V
Sbjct: 63 SDESANNRWASHYKEQGYECMFMDSRKKNGVNALIKAIENVSKEKRERDAKRGIKNRPVR 122
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M+ GIPNVGKS L NS+ GR A K PG TK +K+ I +
Sbjct: 123 AMVAGIPNVGKSTLINSVS--GRAMAKTGNK---------PGVTKGNQWIKLKGQ--IEL 169
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVG----GKELAQYFL 245
LDTPGIL P+ D + +A G+I D + G EL ++F+
Sbjct: 170 LDTPGILWPKFEDENIGEMIAFIGSINDMIIDIRELGLELIKWFI 214
>gi|255994296|ref|ZP_05427431.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium saphenum
ATCC 49989]
gi|255993009|gb|EEU03098.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium saphenum
ATCC 49989]
Length = 284
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 113/229 (49%), Gaps = 31/229 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM AT I + + ++D+++E+ DAR+P SS+ D L H RRI++LNK
Sbjct: 6 WYPGHMKKATDTIREDLKVIDVVIEILDARVPLSSKNPVLDSLLRKH-----RRIIILNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSD-- 141
DLA + ++W F Q +F VNS +KE L+ H+ + KS+ D +
Sbjct: 61 YDLAGDSGNEKWKGHFKTQGADAFLVNSITGFGIKE----LERHIMKI-KSELDEKNSFN 115
Query: 142 -TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ +M++GIPNVGKS+ N + K R +PG T+ +I P
Sbjct: 116 KPMRLMVVGIPNVGKSSFINRMT-----------KKRSTVTGDKPGVTR---GKQIIRFP 161
Query: 201 -NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
N+ ++DTPGIL P D V +LA G I D + LA + L
Sbjct: 162 NNVQLMDTPGILWPNFEDELVALRLAFCGCIKDEILDTSTLAVRLIDYL 210
>gi|119953421|ref|YP_945630.1| ribosomal biogenesis GTPase [Borrelia turicatae 91E135]
gi|119862192|gb|AAX17960.1| GTP-binding protein [Borrelia turicatae 91E135]
Length = 305
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 120/237 (50%), Gaps = 16/237 (6%)
Query: 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMD 85
W+ HM A I + + +I+LE+ DAR P SS+ S+ +I++LNK D
Sbjct: 23 NWFPGHMKRALDLIQENLQRTNIVLEILDARAPLSSQNPLTEKIIKNSNRNKIILLNKSD 82
Query: 86 LASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTV 145
LA + +W +F+ N + K K+ + + + N++K + + V
Sbjct: 83 LAQEEEILKWREYFETLGNNVLITNIYKKGMKKQIIDNI-IKIANVKK--IKTYEEKIKV 139
Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVL 205
+++G+PNVGKS++ N L +G+ + +V+ +PG TK+I LKI NI+
Sbjct: 140 LVIGVPNVGKSSIINLL--VGK---------KSTSVANKPGHTKNIQILKINERINIF-- 186
Query: 206 DTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262
D PGIL + D E+ KLA+ I + + ELA Y L ++ +++ K K++I
Sbjct: 187 DMPGILWHNLEDQEIAKKLAILDMIKNEIIDNTELALYLLKKMHINNKTKLLNKYNI 243
>gi|401683536|ref|ZP_10815422.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
BS35b]
gi|400187614|gb|EJO21808.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
BS35b]
Length = 273
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 115/226 (50%), Gaps = 21/226 (9%)
Query: 32 MAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ 91
M+ A R + + + VD + + DAR+P SS+ L + ++L+LNK DLA P
Sbjct: 1 MSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--NKIVGDKPKLLILNKADLADPAM 58
Query: 92 FKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTVTVMLL 148
KEW +F+ Q + +NS + VK + K L A + R+ + +T+ M++
Sbjct: 59 TKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMAD-KIARQKERGIKIETLRTMII 117
Query: 149 GIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTP 208
GIPN GKS L N L GK + A V +PG TK LK ++ ++ +LDTP
Sbjct: 118 GIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--TNKDLEILDTP 164
Query: 209 GILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
GIL P+ D V KLALTGAI D + E+ + G+ F Y
Sbjct: 165 GILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF--GLNYFKKHY 208
>gi|449094297|ref|YP_007426788.1| ribosomal biogenesis GTPase [Bacillus subtilis XF-1]
gi|449028212|gb|AGE63451.1| ribosomal biogenesis GTPase [Bacillus subtilis XF-1]
Length = 282
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 21/227 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ L+DI+ E+ DARIP SS + + + RI++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI--LKNKPRIMLLNKADK 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASSDT 142
A ++W F++Q S +NS N + + + + LQ +R +
Sbjct: 63 ADAAVTQQWKEHFEKQGIRSLSINSVNGQGLNQIVPASREILQEKFDRMRAKGVKPRA-- 120
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ +++GIPNVGKS L N L K A +PG T +K+ +
Sbjct: 121 IRALIIGIPNVGKSTLINRL-----------AKKNIAKTGDRPGITTSQQWVKVGKE--L 167
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+LDTPGIL P+ D V +LA+TGAI DS + +++A + L L
Sbjct: 168 ELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLE 214
>gi|390454093|ref|ZP_10239621.1| GTPase [Paenibacillus peoriae KCTC 3763]
Length = 286
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 118/230 (51%), Gaps = 32/230 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A R I ++ L+D+++E+ DAR+P SS D + P R+++LNK
Sbjct: 5 WFPGHMTRARRQIEAKLKLIDLVIELIDARLPLSSRNPMIDDILQGKP-----RMIILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT- 142
DLA P ++WI +F +Q +F V++ +KE +QA + K D S
Sbjct: 60 ADLADPVVSQQWIAYFKEQGHIAFQVDATTGTGMKEIP--VQAKLLLKEKIDRQISKGMN 117
Query: 143 ---VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ +++GIPNVGKS L N + GR AA +PG TK +K
Sbjct: 118 PRPIRALIVGIPNVGKSTLINRMA--GRNIAA---------TGDRPGVTKAQQWIKTGE- 165
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELA----QYFL 245
I +LDTPGIL P+ D V +LA+TGAI + + +++A +YF+
Sbjct: 166 --IELLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNVEDIAFFATKYFV 213
>gi|392531088|ref|ZP_10278225.1| ribosomal biogenesis GTPase [Carnobacterium maltaromaticum ATCC
35586]
gi|414083721|ref|YP_006992429.1| ribosome biogenesis GTP-binding protein YlqF [Carnobacterium
maltaromaticum LMA28]
gi|412997305|emb|CCO11114.1| ribosome biogenesis GTP-binding protein YlqF [Carnobacterium
maltaromaticum LMA28]
Length = 289
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 114/231 (49%), Gaps = 31/231 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R +++++ LVDI+ E+ DARIP SS D+L P R+++LNK
Sbjct: 5 WFPGHMAKARREVSEKLKLVDIVFELVDARIPLSSRNPILDELIGEKP-----RVIILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
DLA Q K W+ +F +Q + + + ++ + + + L K +D
Sbjct: 60 SDLADERQTKAWVNYFKEQGISAVPIVAQEGKGMQNVM----SEAKLLLKEKFDRMRSKG 115
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ + M +GIPNVGKS L N K A +PG TK +
Sbjct: 116 INPRAIRAMSIGIPNVGKSTLINRFI-----------KRNIAKTGNKPGVTKG--QQWLK 162
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P+ D E+ KLALTGAI D+ + ++A + L ++
Sbjct: 163 LGKELELLDTPGILWPKFEDPEIGKKLALTGAIKDTLLQMDDIALFGLDVM 213
>gi|359411414|ref|ZP_09203879.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
DL-VIII]
gi|357170298|gb|EHI98472.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
DL-VIII]
Length = 287
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 119/248 (47%), Gaps = 31/248 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HM R I + + LVD ++E+RDARIP SS + +L P RI++LNK
Sbjct: 5 WFPGHMKKTQREIKENLKLVDAVIEIRDARIPRSSANPDIKKLLEGKP-----RIILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
DL KEWI + ++ VN D LK ++ + +L K +D
Sbjct: 60 SDLTDNRVTKEWINYLTEEEVKVLEVNCLKGDG----LKNIKPMLLSLLKEKHDRLKAKG 115
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ T+ VM++GIPNVGKS N ++ R A+ G +PG TK +K
Sbjct: 116 MVNITMRVMVVGIPNVGKSTFIN---KMARNNIAKTGD--------KPGVTKSKQWIKTG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
I +LDTPG+L P D E LA TGAI D + +ELA + L S E K
Sbjct: 165 M--GIELLDTPGVLWPRFEDDETALNLAFTGAIKDEIMDIEELALKLVERLQGSYEDKLK 222
Query: 258 AKFSINQI 265
++ + ++
Sbjct: 223 ERYKLAEV 230
>gi|308173567|ref|YP_003920272.1| ribosome biogenesis GTPase A [Bacillus amyloliquefaciens DSM 7]
gi|384159412|ref|YP_005541485.1| GTPase YlqF [Bacillus amyloliquefaciens TA208]
gi|384164153|ref|YP_005545532.1| ribosome biogenesis GTPase A [Bacillus amyloliquefaciens LL3]
gi|384168459|ref|YP_005549837.1| ribosomal biogenesis GTPase [Bacillus amyloliquefaciens XH7]
gi|307606431|emb|CBI42802.1| ribosome biogenesis GTPase A [Bacillus amyloliquefaciens DSM 7]
gi|328553500|gb|AEB23992.1| GTPase YlqF [Bacillus amyloliquefaciens TA208]
gi|328911708|gb|AEB63304.1| ribosome biogenesis GTPase A [Bacillus amyloliquefaciens LL3]
gi|341827738|gb|AEK88989.1| ribosomal biogenesis GTPase [Bacillus amyloliquefaciens XH7]
Length = 282
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 123/253 (48%), Gaps = 41/253 (16%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+DI+ E+ DARIP SS +++ P RI++LNK
Sbjct: 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEEILKDKP-----RIMLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNV-------KEFL--KFLQAHVRNLRKS 134
D A +W F +Q PS +NS N + KE L KF + + +R
Sbjct: 60 ADKADAAVTAQWKDHFQEQGIPSLSINSVNGQGLHQIVPSSKELLKDKFDKMKAKGIRPR 119
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ +++GIPNVGKS L N L K A +PG T +
Sbjct: 120 -------AIRALIIGIPNVGKSTLINRL-----------AKKNIAKTGDRPGITTSQQWV 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSD 252
K+ + +LDTPGIL P+ D V +LA+TGAI D+ + +++A + L L + D
Sbjct: 162 KVGKE--LELLDTPGILWPKFEDELVGLRLAITGAIKDTIINLQDVAVFGLRFLEEHYPD 219
Query: 253 EYKKWAKFSINQI 265
K+ ++ + +I
Sbjct: 220 RLKE--RYGLQEI 230
>gi|418033249|ref|ZP_12671726.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|351469397|gb|EHA29573.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
SC-8]
Length = 282
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 21/227 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ L+DI+ E+ DARIP SS + + + RI++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI--LKNKPRIMLLNKADK 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASSDT 142
A ++W F++Q S +NS N + + + + LQ +R +
Sbjct: 63 ADAAVTQQWKEHFEKQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRA-- 120
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ +++GIPNVGKS L N L K A +PG T +K+ +
Sbjct: 121 IRALIIGIPNVGKSTLINRL-----------AKKNIAKTGDRPGITTSQQWVKVGKE--L 167
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+LDTPGIL P+ D V +LA+TGAI DS + +++A + L L
Sbjct: 168 ELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLE 214
>gi|228475017|ref|ZP_04059745.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
hominis SK119]
gi|418620398|ref|ZP_13183202.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
hominis VCU122]
gi|228271002|gb|EEK12390.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
hominis SK119]
gi|374822528|gb|EHR86548.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
hominis VCU122]
Length = 294
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 112/227 (49%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R + +++ VD++ E+ DARIP+SS D + P R+++LNK
Sbjct: 5 WYPGHMAKAKREVTEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK--EFLKFLQAHVRNLRKSDYDASSD 141
D+++ + ++W FF + V++ + N+K E + ++
Sbjct: 60 KDMSNLNEMQKWEHFFTDKGFYPVAVDAKHGKNLKGVENAAIEATKEKFEKEKAKGLKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS L N L K A +PG TK +K+
Sbjct: 120 AIRAMIVGIPNVGKSTLINKL-----------AKKNIAQTGNKPGVTKQQQWIKVGKA-- 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P+ D V KL+LTGAI DS V E+A Y L L
Sbjct: 167 LQLLDTPGILWPKFEDETVGKKLSLTGAIKDSIVHLDEVAIYGLQFL 213
>gi|138894725|ref|YP_001125178.1| ribosomal biogenesis GTPase [Geobacillus thermodenitrificans
NG80-2]
gi|134266238|gb|ABO66433.1| GTP-binding protein [Geobacillus thermodenitrificans NG80-2]
Length = 286
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 20/227 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ L+D+ E+ DAR+P SS + + R+++LNK D+
Sbjct: 6 WFPGHMAKAKREVQEKLKLIDVAFELLDARVPMSSRNPMIDDI--LGQKTRLILLNKADM 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL---RKSDYDASSDTV 143
A ++WI +F Q + +++ + VK+ + + V++ ++ + V
Sbjct: 64 ADEAVTEQWIRYFRDQGRTAIAIDAQSGTGVKQIVAAAKEMVKDKFEKMRAKGIKNPRPV 123
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRH-ATVSPQPGETKDIYSLKIASHPNI 202
+++GIPNVGKS L N L RH A +PG TK +K+ +
Sbjct: 124 RALIVGIPNVGKSTLINRLAG------------RHIAKTGDKPGVTKAQQWIKVGKE--M 169
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+LDTPGIL P+ D +V +LA+TGAI D + +++A Y L L+
Sbjct: 170 ELLDTPGILWPKFEDEDVGYRLAVTGAIKDEILNLQDVAVYALRFLS 216
>gi|239617320|ref|YP_002940642.1| GTP-binding protein HSR1-related [Kosmotoga olearia TBF 19.5.1]
gi|239506151|gb|ACR79638.1| GTP-binding protein HSR1-related [Kosmotoga olearia TBF 19.5.1]
Length = 280
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 106/207 (51%), Gaps = 29/207 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY H+ A + I + +VD I+E+ DARIP++S E+++L F + +RILVLNK
Sbjct: 2 WYPGHIEKAKKNIQKHLKIVDAIVELVDARIPYTSRAYEYEKL-----FGNKQRILVLNK 56
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTV 143
DLA P W +F + N P +N + D +FL V L KS Y
Sbjct: 57 EDLADPAITSRWQKYFLKGNVPILKINLKSADA----RRFLTKKVFPLIKSRYAEKR--- 109
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
+M++GIPNVGKS N L KGK + V PG T+ + + ++ +
Sbjct: 110 -IMIVGIPNVGKSTFINRL----------KGK-KSLVVGNTPGVTRGVQWITVSKQ--LM 155
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAI 230
VLDTPGIL +H + +KLA G++
Sbjct: 156 VLDTPGILYTRLHSPSIITKLAAVGSL 182
>gi|125624005|ref|YP_001032488.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. cremoris
MG1363]
gi|389854353|ref|YP_006356597.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. cremoris
NZ9000]
gi|124492813|emb|CAL97768.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
MG1363]
gi|300070775|gb|ADJ60175.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 282
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 116/234 (49%), Gaps = 25/234 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM+ A R + + + VD ++E+ DAR+P SS Q+ P RI+ LNK
Sbjct: 5 WFPGHMSKARRQVQENLKYVDFVIELVDARLPMSSRNPMLGQIIGDKP-----RIIALNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD--ASSD 141
DLA ++ EWI +FD+Q + +NS + K + + + D + +
Sbjct: 60 ADLADSSKVAEWIEYFDEQGFVTLAINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHT 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
T+ M++GIPN GKS L N L GK + A +PG TK I ++
Sbjct: 120 TLRTMIIGIPNAGKSTLMNRL----------AGK-KVAVTGNRPGVTKG--QQWIRTNKE 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYK 255
+ +LDTPGIL P+ D V KLALTGAI D + E+ + G+ +F Y+
Sbjct: 167 LELLDTPGILWPKFEDQLVGLKLALTGAIKDDLLPMDEVTIF--GLDHFLKNYR 218
>gi|300361595|ref|ZP_07057772.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
JV-V03]
gi|300354214|gb|EFJ70085.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
JV-V03]
Length = 279
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 116/240 (48%), Gaps = 25/240 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + D + L+D+++EV DAR+P SS QL P I++LNK
Sbjct: 6 WYPGHMNKAKNQLEDNLDLIDVLIEVLDARLPVSSRNPMIGQLTKKKP-----HIIILNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKF--LQAHVRNLRKSDYDASSD 141
DLA P Q K+W +F + +++ + N+ K L + + AS+
Sbjct: 61 SDLADPIQTKKWTRYFQDEGNFVISMDAQHNTNMTSLFKIIKLAGKKKTEKLIAKGASNP 120
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ V + GIPN GKS + N + +GR A V +PG T+ LK + N
Sbjct: 121 MIRVAIAGIPNCGKSTIINRM--VGR---------NAAIVGDKPGVTRGQSWLK--TKTN 167
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKKWAK 259
+ +LDTPGIL P+ D EV KLA GAI ++A + + L N+ + K+A+
Sbjct: 168 VQILDTPGILWPKFSDQEVGYKLAACGAIKADVFHPDDVALFVIEFLKQNYQKDLAKFAQ 227
>gi|418017710|ref|ZP_12657266.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
salivarius M18]
gi|345526559|gb|EGX29870.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
salivarius M18]
Length = 284
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 115/223 (51%), Gaps = 21/223 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DL
Sbjct: 6 WFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDT 142
A + KEW ++F+ Q + +NS + VK + K L A ++ LR+ +T
Sbjct: 64 ADSNRTKEWRSYFENQGIKTLAINSKEQSTVKLVTDAAKSLMADKIQRLRER--GIQKET 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPN GKS L N L GK + A V +PG TK LK S+ ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL + D V KLALTGAI D + E+ + L
Sbjct: 169 EILDTPGILWSKFEDELVGLKLALTGAIKDQLLPMDEVTIFGL 211
>gi|227510327|ref|ZP_03940376.1| GTP-binding protein [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227189979|gb|EEI70046.1| GTP-binding protein [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 290
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 110/224 (49%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + + LVDI+ E+ DARIP++S E ++ P + +L K
Sbjct: 7 WFPGHMAKAIRQFEENIGLVDIVFEIIDARIPYASQNPEVARITGEKP-----HLFILTK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV--RNLRKSDYDASSD 141
DLA P + W+ F + P+ V++ K N+ L + + + R+
Sbjct: 62 KDLADPRLTQRWLDSFKSKGQPAIAVDAKTKFNIGNVLSVISPLLSEKLAREEQRGMKKR 121
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ + +G+PNVGKS + N L + R R A V +PG TK LK
Sbjct: 122 PIRAISVGVPNVGKSTVLNRL--VNR---------RAAQVGNRPGVTKGQQWLKAGKE-- 168
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ E+ +KLALTGAI DS ++A + L
Sbjct: 169 LELLDTPGILWPKFESQEIANKLALTGAIKDSVFASDDIALFGL 212
>gi|390934868|ref|YP_006392373.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389570369|gb|AFK86774.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 278
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 110/229 (48%), Gaps = 23/229 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA R I + + +VD++ E+ DARIP SS D L + +RI++LNK
Sbjct: 4 WYPGHMAKTKRLIEENLKIVDVVYELLDARIPKSSRNPLIDDL-----VKNKKRIILLNK 58
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL-RKSDYDASSDT 142
DLA K W +F+ + S +NS + ++ + ++ K
Sbjct: 59 SDLADLEVNKMWNDYFNLKGHVSLNINSLDSRCIQSIYELTLKECSDIIDKKRQKGIKAK 118
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS L NSL K ++A +PG TK S + P
Sbjct: 119 LRAMIVGIPNVGKSTLINSLT-----------KTKNAKTGNKPGVTK---SKQWIKTPYF 164
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFS 251
+LDTPGIL P+ D V LALT AI D + +ELA L IL +
Sbjct: 165 DLLDTPGILWPKFEDEHVGIMLALTSAIKDELLNHEELAYSLLDILKIN 213
>gi|116629568|ref|YP_814740.1| GTPase [Lactobacillus gasseri ATCC 33323]
gi|238853073|ref|ZP_04643465.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
202-4]
gi|282852053|ref|ZP_06261411.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
224-1]
gi|311110788|ref|ZP_07712185.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
MV-22]
gi|420147282|ref|ZP_14654558.1| Ribosome biogenesis GTPase A [Lactobacillus gasseri CECT 5714]
gi|116095150|gb|ABJ60302.1| Ras superfamily GTP-binding protein YlqF [Lactobacillus gasseri
ATCC 33323]
gi|238834321|gb|EEQ26566.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
202-4]
gi|282556813|gb|EFB62417.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
224-1]
gi|311065942|gb|EFQ46282.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
MV-22]
gi|398401283|gb|EJN54785.1| Ribosome biogenesis GTPase A [Lactobacillus gasseri CECT 5714]
Length = 279
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 116/240 (48%), Gaps = 25/240 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + D + L+D+++EV DAR+P SS QL P I++LNK
Sbjct: 6 WYPGHMNKAKNQLEDNLDLIDVLIEVLDARLPVSSRNPMIGQLTKKKP-----HIIILNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKF--LQAHVRNLRKSDYDASSD 141
DLA P Q K+W +F + +++ + N+ K L + + AS+
Sbjct: 61 SDLADPIQTKKWTRYFQDEGNFVISMDAQHNTNMTSLFKIIKLAGKKKTEKLIAKGASNP 120
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ V + GIPN GKS + N + +GR A V +PG T+ LK + N
Sbjct: 121 MIRVAIAGIPNCGKSTIINRM--VGR---------NAAIVGDKPGVTRGQSWLK--TKTN 167
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKKWAK 259
+ +LDTPGIL P+ D EV KLA GAI ++A + + L N+ + K+A+
Sbjct: 168 VQILDTPGILWPKFSDQEVGYKLAACGAIKADVFHPDDVALFVIEFLKQNYKKDLTKFAQ 227
>gi|451344263|ref|ZP_21913323.1| ribosome biogenesis GTP-binding protein YlqF [Eggerthia
catenaformis OT 569 = DSM 20559]
gi|449336977|gb|EMD16145.1| ribosome biogenesis GTP-binding protein YlqF [Eggerthia
catenaformis OT 569 = DSM 20559]
Length = 289
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 113/228 (49%), Gaps = 23/228 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R I R+ +VD+++E+ DAR PFSS FD++ + P R++++ K
Sbjct: 10 WYPGHMAKAEREIESRIKIVDMVIELVDARAPFSSRNTSFDRILKNKP-----RLVLMTK 64
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSD-- 141
DLA ++W +F+ ++ S VN N K+ + A + R+ +
Sbjct: 65 SDLADSQITEKWQSFYKEKGFLSLAVNLKNFKEEKKIINMCLAMLSEKREKEAQKGLKIR 124
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++G+PNVGKS L N+L K + A +PG TK ++I + +
Sbjct: 125 AIRAMIIGVPNVGKSTLINAL-----------AKRKAAIAGNKPGVTKAQQIIRI--NKD 171
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ DTPGILPP+ D +AL G+I + +L Y + LN
Sbjct: 172 FELFDTPGILPPKYSDFITSCNVALIGSIKKDILPLDDLFIYAVKYLN 219
>gi|428226923|ref|YP_007111020.1| Ras superfamily GTP-binding protein YlqF [Geitlerinema sp. PCC
7407]
gi|427986824|gb|AFY67968.1| Ras superfamily GTP-binding protein YlqF [Geitlerinema sp. PCC
7407]
Length = 291
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 115/230 (50%), Gaps = 29/230 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A +A+ +++ VD++LEVRDARIP S+ HHP S R+LVL
Sbjct: 8 WYPGHIAKAEKALTEQLKRVDVVLEVRDARIPLST-------HHPQVPQWVGSKGRVLVL 60
Query: 82 NKMDLASPTQFKEWITFFDQQ-NCPSFGVNSHNK--DNVKEFLKFLQAHVRNLRKSDYDA 138
N+ D+ P + W +F P F K V + ++ + AHV N R+ D
Sbjct: 61 NREDMIPPVAQQAWTDWFTAAGEVPCFTNAQQGKGIQAVSQAVQEVGAHV-NERRRDRGM 119
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
+ +++G PNVGKSAL N L + + +A + PG T+ + ++I+
Sbjct: 120 LPRPIRAVVIGFPNVGKSALINRLLKKRVVESARR-----------PGVTRQLRWVRISD 168
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
I +LD PG+LP ++D KLA+ IG++ + +A + +L
Sbjct: 169 Q--IELLDAPGVLPSRLNDQAAALKLAICDDIGEASYDNQRVAAALIEML 216
>gi|428307397|ref|YP_007144222.1| Ras superfamily GTP-binding protein YlqF [Crinalium epipsammum PCC
9333]
gi|428248932|gb|AFZ14712.1| Ras superfamily GTP-binding protein YlqF [Crinalium epipsammum PCC
9333]
Length = 289
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 17/225 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H+A A R++ +++ VD++LEVRDARIP ++ Q++ +S ++LVLN++D+
Sbjct: 8 WYPGHIAKAERSLKEQLKRVDVVLEVRDARIPLATRHPQVQEW--IASKTKVLVLNRVDM 65
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLK-FLQAHVR-NLRKSDYDASSDTVT 144
SP + W +F Q + N+ + V K +A V N ++SD V
Sbjct: 66 ISPAVRQLWTQWFLQHGEKPYFTNAQQGEGVVAISKAAAEAGVEVNKKRSDRGLLPRPVR 125
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
+++G PNVGKSAL N L + + +A + G TK + ++I+ I +
Sbjct: 126 AVVIGFPNVGKSALINRLLKKRVVESARRA-----------GVTKQLRWVRISDQ--IEL 172
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
LD PGI+P ++ D + KLA+ IG++ + +A + +LN
Sbjct: 173 LDAPGIIPWKLDDQDAAFKLAICDDIGEASYDNQRVAAALVDLLN 217
>gi|289578448|ref|YP_003477075.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
italicus Ab9]
gi|289528161|gb|ADD02513.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
italicus Ab9]
Length = 277
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 120/240 (50%), Gaps = 17/240 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA + + I + LVD+I E+ DARIP SS + + + +R+++LNK DL
Sbjct: 4 WYPGHMAKSKKEIVSNLKLVDVIYEIVDARIPKSSRNPDIDD--IVKNKKRLILLNKADL 61
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN-LRKSDYDASSDTVTV 145
A WI +F ++ + VNS +KE + Q ++ L K +
Sbjct: 62 ADDVITDLWIEYFKEKGIEAIKVNSITGFGLKEINEATQRVCQDILEKKRQKGMIPRLRG 121
Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVL 205
+++G+PNVGKS N L IG + A +PG T+ ++ +K P +L
Sbjct: 122 IIVGVPNVGKSTFINKL--IGS---------KRAKTGDKPGVTRTLHWIK---TPYFDIL 167
Query: 206 DTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQI 265
DTPGIL P+ D E LA+TGAI D + +E+A + IL + +++ I++I
Sbjct: 168 DTPGILWPKFDDKETGIMLAITGAIKDEILNIEEIALNLVAILKKYYPHYLMSRYKIDKI 227
>gi|298490204|ref|YP_003720381.1| ribosome biogenesis GTP-binding protein YlqF ['Nostoc azollae'
0708]
gi|298232122|gb|ADI63258.1| ribosome biogenesis GTP-binding protein YlqF ['Nostoc azollae'
0708]
Length = 293
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 17/229 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H+A A + + +++ VD++LEVRDARIP ++ Q+ R+LV+N++D+
Sbjct: 14 WYPGHIAKAEKNLKEQLKRVDVVLEVRDARIPLATNHPQMNEW--VGGKSRVLVINRLDM 71
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAH--VRNLRKSDYDASSDTVT 144
SP W+ +F Q + N+ + + K QA N R+ D V
Sbjct: 72 ISPQVRSLWVDWFKSQEQVPYFTNAQHGQGITAITKAAQAAGVELNQRRKDRGMLPRPVR 131
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
+++G PNVGKSAL N L +G+ R + +PG T+ + ++I+ + +
Sbjct: 132 AVVIGFPNVGKSALINRL--LGK---------RVVESAARPGVTRQLRWVRISDQ--LQL 178
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDE 253
LD PG++P + + KLA+ IG++ + +A F+ ILN E
Sbjct: 179 LDAPGVIPSRMENQAAAVKLAICDDIGEASYDNQLVAAAFIDILNELQE 227
>gi|428774581|ref|YP_007166369.1| Ras superfamily GTP-binding protein YlqF [Cyanobacterium stanieri
PCC 7202]
gi|428688860|gb|AFZ48720.1| Ras superfamily GTP-binding protein YlqF [Cyanobacterium stanieri
PCC 7202]
Length = 281
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 119/231 (51%), Gaps = 18/231 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H++ A R + +++ VD++LEVRDARIP +S QL++ RIL+LN+ D+
Sbjct: 6 WYPGHISKAERQLKEQLKRVDVVLEVRDARIPLASHHPQLKDW--IGDKPRILILNREDM 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAH--VRNLRKSDYDASSDTVT 144
+ T +EW +F + F N+ + VK K Q N ++ V
Sbjct: 64 ITNTLKQEWQEWFKNEGENPFFTNAKDGKGVKAINKASQGCGVEVNKKRQSRGMLPRPVR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
+++G PNVGKSAL N L + +A K G T+ + ++I+ +I +
Sbjct: 124 AVVIGFPNVGKSALINRLLNRKIVASARKA-----------GVTRQLQWVRISK--DIEL 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL-NFSDEY 254
LD PGI+P ++ + + KLA+ IG++ +E+AQ F+ +L N EY
Sbjct: 171 LDAPGIIPLKLENQDDALKLAICEDIGEAAYENQEVAQKFVDLLVNLGTEY 221
>gi|196247656|ref|ZP_03146358.1| GTP-binding protein HSR1-related [Geobacillus sp. G11MC16]
gi|196212440|gb|EDY07197.1| GTP-binding protein HSR1-related [Geobacillus sp. G11MC16]
Length = 288
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 20/227 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ L+D+ E+ DAR+P SS + + R+++LNK D+
Sbjct: 8 WFPGHMAKAKREVQEKLKLIDVAFELLDARVPMSSRNPMIDDI--LGQKTRLILLNKADM 65
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL---RKSDYDASSDTV 143
A ++WI +F Q + +++ + VK+ + + V++ ++ + V
Sbjct: 66 ADEAVTEQWIRYFRDQGRTAIAIDAQSGTGVKQIVAAAKEMVKDKFEKMRAKGIKNPRPV 125
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRH-ATVSPQPGETKDIYSLKIASHPNI 202
+++GIPNVGKS L N L RH A +PG TK +K+ +
Sbjct: 126 RALIVGIPNVGKSTLINRLAG------------RHIAKTGDKPGVTKAQQWIKVGKE--M 171
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+LDTPGIL P+ D +V +LA+TGAI D + +++A Y L L+
Sbjct: 172 ELLDTPGILWPKFEDEDVGYRLAVTGAIKDEILNLQDVAVYALRFLS 218
>gi|90409041|ref|ZP_01217168.1| GTP-binding protein [Psychromonas sp. CNPT3]
gi|90309848|gb|EAS38006.1| GTP-binding protein [Psychromonas sp. CNPT3]
Length = 311
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 127/253 (50%), Gaps = 33/253 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + I + +P VDII+EV DARIP+SSE +R + P I VLNK
Sbjct: 8 WFPGHMHKAHKQIKEVLPQVDIIIEVVDARIPYSSENPLIASIRENTPC-----IKVLNK 62
Query: 84 MDLASPTQFKEWITFF-DQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P EWI++ ++Q + +++ + V + K Q + N
Sbjct: 63 ADLADPAITAEWISYLEEEQGIKALSISTLKPEQVHQITKLCQKMLPN-----KVTQGKQ 117
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS + N L RI A +P TK+ +++ S I
Sbjct: 118 IRAMIMGIPNVGKSTIINILAD--RII---------AKTGNEPAVTKNQQRIRLPS--GI 164
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKKWAKF 260
+ DTPG L P+I + + +LA+TGAI D+ + +++A Y L N+ + K A++
Sbjct: 165 MLSDTPGFLWPKIENADSGYRLAITGAIKDTAIEYEDIAYYAAEYLIKNYPERLK--ARY 222
Query: 261 SINQINKPLTLHH 273
+ ++ P T H
Sbjct: 223 ELAEV--PETDHE 233
>gi|56419739|ref|YP_147057.1| ribosomal biogenesis GTPase [Geobacillus kaustophilus HTA426]
gi|56379581|dbj|BAD75489.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 286
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 34/234 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+ E+ DAR+P SS D++ P R+++LNK
Sbjct: 6 WFPGHMAKAKREVQEKLKLIDVAFELLDARVPMSSRNPMIDEILGQKP-----RLILLNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A ++WI +F Q + +++ + V++ + A + + K ++
Sbjct: 61 ADMADEAVTEQWIRYFHDQGRLALPIDAQSGTGVRQ----IAAAAKEMVKDKFEKMRAKG 116
Query: 139 --SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRH-ATVSPQPGETKDIYSLK 195
+ V +++GIPNVGKS L N L RH A +PG TK +K
Sbjct: 117 IKNPRPVRALIVGIPNVGKSTLINRLAG------------RHIAKTGDKPGVTKAQQWIK 164
Query: 196 IASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ + +LDTPGIL P+ D +V KLA+TGAI D + +++A Y L L+
Sbjct: 165 VGKE--MELLDTPGILWPKFEDEDVGYKLAVTGAIKDEILNLQDVAVYALRFLS 216
>gi|336430713|ref|ZP_08610652.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 3_1_57FAA_CT1]
gi|336016806|gb|EGN46582.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 3_1_57FAA_CT1]
Length = 279
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 118/234 (50%), Gaps = 28/234 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQL-RNHHPFSSSRRILVLN 82
WY HM A RA+ + + L+D+I+E+ DARIP SS + D+L RN R++++N
Sbjct: 5 WYPGHMTKARRAMQEDIKLIDLIIELVDARIPLSSRNPDIDELGRNKA------RLVLMN 58
Query: 83 KMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--S 140
K DLA P + W +F +Q S +N+ + +K +Q R + D +
Sbjct: 59 KSDLADPACNRAWTAWFQEQGIKSLEINAQSGQGMKAIQGAVQEVCREKIERDRKRGILN 118
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
V M++GIPNVGKS NS GK T +PG TK +++ +
Sbjct: 119 RPVRAMVVGIPNVGKSTFINSFA----------GKACTKT-GNKPGVTKGKQWIRL--NK 165
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+ +LDTPGIL P+ D V KLA G++ D + ELA + +++F E+
Sbjct: 166 GLELLDTPGILWPKFEDQSVGMKLAFIGSMNDEIIIMDELA---VDLISFLQEW 216
>gi|261419404|ref|YP_003253086.1| ribosomal biogenesis GTPase [Geobacillus sp. Y412MC61]
gi|297530621|ref|YP_003671896.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
C56-T3]
gi|319766219|ref|YP_004131720.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
Y412MC52]
gi|448237360|ref|YP_007401418.1| ribosomal biogenesis GTPase A [Geobacillus sp. GHH01]
gi|261375861|gb|ACX78604.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
Y412MC61]
gi|297253873|gb|ADI27319.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
C56-T3]
gi|317111085|gb|ADU93577.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
Y412MC52]
gi|445206202|gb|AGE21667.1| ribosomal biogenesis GTPase A [Geobacillus sp. GHH01]
Length = 288
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 34/234 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+ E+ DAR+P SS D++ P R+++LNK
Sbjct: 8 WFPGHMAKAKREVQEKLKLIDVAFELLDARVPMSSRNPMIDEILGQKP-----RLILLNK 62
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A ++WI +F Q + +++ + V++ + A + + K ++
Sbjct: 63 ADMADEAVTEQWIRYFHDQGRLALPIDAQSGTGVRQ----IAAAAKEMVKDKFEKMRAKG 118
Query: 139 --SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRH-ATVSPQPGETKDIYSLK 195
+ V +++GIPNVGKS L N L RH A +PG TK +K
Sbjct: 119 IKNPRPVRALIVGIPNVGKSTLINRLAG------------RHIAKTGDKPGVTKAQQWIK 166
Query: 196 IASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ + +LDTPGIL P+ D +V KLA+TGAI D + +++A Y L L+
Sbjct: 167 VGKE--MELLDTPGILWPKFEDEDVGYKLAVTGAIKDEILNLQDVAVYALRFLS 218
>gi|317129226|ref|YP_004095508.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus
cellulosilyticus DSM 2522]
gi|315474174|gb|ADU30777.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus
cellulosilyticus DSM 2522]
Length = 282
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 117/244 (47%), Gaps = 37/244 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ ++D+++E+ DAR+P SS D+L P R+++LNK
Sbjct: 5 WFPGHMAKAKRQVQEKLKVIDVVIELVDARVPLSSRNPMIDELVKSKP-----RLILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
DLA W+ +F+ + +N+ VK+ + A V L K D
Sbjct: 60 SDLADQKVTDLWVKYFETKGFAVQQINAQKGTGVKK----IPAIVEKLAKPITDKMRAKG 115
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ V ++LGIPNVGKS + N L A K R ATV +PG TK +K+
Sbjct: 116 MNPRAVRALILGIPNVGKSTIINRL--------ANK---RIATVGDKPGVTKAQQWIKVG 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL------NFS 251
+ +LDTPGIL P+ D V +LALTGAI + E + L L
Sbjct: 165 KE--MELLDTPGILWPKFEDESVGFRLALTGAIKEELFDFNETTLFLLRYLAEKYPERLK 222
Query: 252 DEYK 255
D YK
Sbjct: 223 DRYK 226
>gi|296330820|ref|ZP_06873295.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305674338|ref|YP_003866010.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. spizizenii
str. W23]
gi|338819266|sp|E0TTS5.1|RBGA_BACPZ RecName: Full=Ribosome biogenesis GTPase A
gi|296151825|gb|EFG92699.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305412582|gb|ADM37701.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 282
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 120/243 (49%), Gaps = 21/243 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ L+DI+ E+ DARIP SS + + + RI++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI--LKNKPRIMLLNKADK 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASSDT 142
A ++W F+ Q S +NS N + + + + LQ +R +
Sbjct: 63 ADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRA-- 120
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ +++GIPNVGKS L N L K A +PG T +K+ +
Sbjct: 121 IRALIIGIPNVGKSTLINRL-----------AKKNIAKTGDRPGITTSQQWVKVGKE--L 167
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262
+LDTPGIL P+ D V +LA+TGAI DS + +++A + L L + ++++
Sbjct: 168 ELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYAL 227
Query: 263 NQI 265
++I
Sbjct: 228 DEI 230
>gi|290580556|ref|YP_003484948.1| GTP-binding protein [Streptococcus mutans NN2025]
gi|254997455|dbj|BAH88056.1| putative GTP-binding protein [Streptococcus mutans NN2025]
Length = 273
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 114/216 (52%), Gaps = 17/216 (7%)
Query: 32 MAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ 91
M+ A R + + + VD + + DAR+P SS+ L ++++LNK+DLA T
Sbjct: 1 MSKARRQVQENLKFVDFVTILVDARLPLSSQNPML--TKIIGDKPKLIILNKVDLADSTC 58
Query: 92 FKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVTVMLLG 149
EW FF++Q + VNS + VK+ + + + + ++ + +T+ M++G
Sbjct: 59 TAEWCNFFEKQGIKALAVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLRTMIVG 118
Query: 150 IPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPG 209
IPNVGKS L N L GK + A V +PG TK LK S+ N+ +LDTPG
Sbjct: 119 IPNVGKSTLMNRLA----------GK-KIAIVGNKPGVTKGQQWLK--SNKNLEILDTPG 165
Query: 210 ILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
IL P+ + V KLA+TGAI D+ + E+ + L
Sbjct: 166 ILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIFGL 201
>gi|452914121|ref|ZP_21962748.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus subtilis
MB73/2]
gi|452116541|gb|EME06936.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus subtilis
MB73/2]
Length = 282
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 112/226 (49%), Gaps = 21/226 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ L+DI+ E+ DARIP SS + + + RI++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI--LKNKPRIMLLNKADK 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASSDT 142
A ++W F+ Q S +NS N + + + + LQ +R +
Sbjct: 63 ADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRA-- 120
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ +++GIPNVGKS L N L K A +PG T +K+ +
Sbjct: 121 IRALIIGIPNVGKSTLINRL-----------AKKNIAKTGDRPGITTSQQWVKVGKE--L 167
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+LDTPGIL P+ D V +LA+TGAI DS + +++A + L L
Sbjct: 168 ELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFL 213
>gi|414078158|ref|YP_006997476.1| ribosome biogenesis GTP-binding protein [Anabaena sp. 90]
gi|413971574|gb|AFW95663.1| ribosome biogenesis GTP-binding protein [Anabaena sp. 90]
Length = 293
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 115/225 (51%), Gaps = 17/225 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H+A A + + +++ VD++LEVRDARIP ++ Q+ + + RILVLN++D+
Sbjct: 14 WYPGHIAKAEKNLKEQLKRVDVVLEVRDARIPITTNHPQM--NEWVGTKTRILVLNRVDM 71
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAH--VRNLRKSDYDASSDTVT 144
P WI +F + + N+ + + K QA N R++D V
Sbjct: 72 ILPQVRSRWIEWFKNRGEVPYFTNAQHGQGITAITKAAQAAGIELNQRRTDRGMLPRPVR 131
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
+++G PNVGKSAL N L IG+ R + +PG T+ + ++I+ + +
Sbjct: 132 AVVIGFPNVGKSALINRL--IGK---------RVVESAARPGVTRQLRWVRISDQ--LQL 178
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
LD PG++P + KLA+ IG++ + +A F+ ILN
Sbjct: 179 LDAPGVIPARLDSQAAAIKLAICDDIGEAAYDNQLIAAAFVDILN 223
>gi|295110186|emb|CBL24139.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus obeum
A2-162]
Length = 284
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 111/227 (48%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A R + + + L+D+I+E+ DAR+P SS + DQL + R+++LNK
Sbjct: 5 WYPGHMTKAKRQMQEDLKLIDLIIELVDARVPLSSRNPDIDQLGQNKS-----RLILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDY--DASSD 141
DLA Q + W FF + V+S N +K +Q + + D +
Sbjct: 60 ADLADERQNEAWKEFFQSKGFHVVKVDSRNGAGMKTIQNVIQEACKEKIERDRRRGIKNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M+ GIPNVGKS N+ GK A +PG TK +++ + N
Sbjct: 120 PIRAMVAGIPNVGKSTFINTFA----------GKA-CAKTGNRPGVTKGKQWIRL--NKN 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P+ D EV +LA G+I D + +ELA + L
Sbjct: 167 VELLDTPGILWPKFEDQEVGIRLAFVGSIKDDILNMEELALKLIDYL 213
>gi|332799158|ref|YP_004460657.1| ribosome biogenesis GTP-binding protein YlqF [Tepidanaerobacter
acetatoxydans Re1]
gi|332696893|gb|AEE91350.1| ribosome biogenesis GTP-binding protein YlqF [Tepidanaerobacter
acetatoxydans Re1]
Length = 285
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 112/222 (50%), Gaps = 22/222 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA + I D + LVD++LE+ DAR P S+ + + + I+++NK DL
Sbjct: 5 WYPGHMAKTKKMIKDNLKLVDVVLELTDARAPLSTHLPDI--NSLIGNKNSIMIMNKADL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVM 146
A W+ +F +Q + VNS K +K L N++K S+ M
Sbjct: 63 ADKKITDMWLKYFKKQGIKAIAVNSLKKSELKNLYNLLG----NVKKKTVLRST---RCM 115
Query: 147 LLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLD 206
++GIPNVGKS+L N + GR +A R A + PG T++ LK+ N+ +LD
Sbjct: 116 IIGIPNVGKSSLINQMA--GRKSA------RTADI---PGVTRNKMWLKV--DDNLELLD 162
Query: 207 TPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
TPGIL P+ D KLA+ G+I + ++L+ + L
Sbjct: 163 TPGILWPKFEDKTTGIKLAILGSIKQELLDFEKLSLILIKYL 204
>gi|321315371|ref|YP_004207658.1| GTPase YlqF [Bacillus subtilis BSn5]
gi|320021645|gb|ADV96631.1| GTPase YlqF [Bacillus subtilis BSn5]
Length = 282
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 112/226 (49%), Gaps = 21/226 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ L+DI+ E+ DARIP SS + + + RI++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI--LKNKPRIMLLNKADK 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASSDT 142
A ++W F+ Q S +NS N + + + + LQ +R +
Sbjct: 63 ADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRA-- 120
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ +++GIPNVGKS L N L K A +PG T +K+ +
Sbjct: 121 IRALIIGIPNVGKSTLINRL-----------AKKNIAKTGDRPGITTSQQWVKVGKE--L 167
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+LDTPGIL P+ D V +LA+TGAI DS + +++A + L L
Sbjct: 168 ELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFL 213
>gi|33239672|ref|NP_874614.1| ribosomal biogenesis GTPase [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
gi|33237197|gb|AAP99266.1| Predicted GTPase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 287
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 113/226 (50%), Gaps = 19/226 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H+A A + ++ + VD+++EVRDARIP ++ L H + + +LV+N+ D+
Sbjct: 8 WYPGHIAKAEQQLSKSLEKVDLVVEVRDARIPLATGHPCL--HKWIRNKKHLLVINRRDM 65
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHN---KDNVKEFLKFLQAHVRNLRKSDYDASSDTV 143
S F W +F + ++ N+ + + +KE L + N R+S V
Sbjct: 66 ISQKAFNSWDNWFKENGQEAWWCNAKDGNGTNKIKEAAIKLGNDLNNRRES-RGMRKRAV 124
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
++LG PNVGKSAL N L + +A + G TK + +++ +
Sbjct: 125 RALILGFPNVGKSALINRLVNKKVVKSARRA-----------GVTKSLQWVRVGQQ--LD 171
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+LD PG+LPP++ D E KLAL IG + + +A FL ILN
Sbjct: 172 LLDAPGVLPPQLEDQEAAVKLALCDDIGQASYDVESVAIKFLNILN 217
>gi|325680801|ref|ZP_08160339.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus albus 8]
gi|324107581|gb|EGC01859.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus albus 8]
Length = 297
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 116/230 (50%), Gaps = 19/230 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ R +A + LVD ++E+ DARIP+SS +++ S R+++LNK D
Sbjct: 9 WFPGHMSKTRRIMASNLKLVDAVVEITDARIPYSSRNPEIKKI--CGSKPRMVLLNKADS 66
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV-RNLRKSDYDA-SSDTVT 144
A P WI ++ +Q P+ + + NV +F L+ + + K D + +
Sbjct: 67 ADPDITSMWIEYYKKQGVPALATDCRSGRNVSKFYPMLKELLSEQIEKWDTRGMTGRPIR 126
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
+M++GIPNVGKS+ N R+ A + A V +PG T+ +A +
Sbjct: 127 MMIVGIPNVGKSSFIN------RLAGA-----KLAKVEDRPGVTRG--KQWVALDEGFEL 173
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
LD PG+L P+ D V +LA TGA+ D + + LA L LN D+Y
Sbjct: 174 LDMPGVLWPKFDDKLVGERLAFTGAVKDVILDTEYLACRLLEYLN--DDY 221
>gi|16078668|ref|NP_389487.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
168]
gi|221309480|ref|ZP_03591327.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
168]
gi|221313805|ref|ZP_03595610.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221318729|ref|ZP_03600023.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221323000|ref|ZP_03604294.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
SMY]
gi|350265918|ref|YP_004877225.1| hypothetical protein GYO_1956 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|386758328|ref|YP_006231544.1| ribosomal biogenesis GTPase [Bacillus sp. JS]
gi|402775850|ref|YP_006629794.1| ribosome biogenesis GTPase A [Bacillus subtilis QB928]
gi|430758972|ref|YP_007209693.1| hypothetical protein A7A1_3480 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|81555913|sp|O31743.1|RBGA_BACSU RecName: Full=Ribosome biogenesis GTPase A
gi|33358156|pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
gi|2633977|emb|CAB13478.1| ribosome biogenesis GTPase A [Bacillus subtilis subsp. subtilis
str. 168]
gi|349598805|gb|AEP86593.1| YlqF [Bacillus subtilis subsp. spizizenii TU-B-10]
gi|384931610|gb|AFI28288.1| ribosomal biogenesis GTPase [Bacillus sp. JS]
gi|402481032|gb|AFQ57541.1| Ribosome biogenesis GTPase A [Bacillus subtilis QB928]
gi|407959011|dbj|BAM52251.1| ribosomal biogenesis GTPase [Synechocystis sp. PCC 6803]
gi|407964588|dbj|BAM57827.1| ribosomal biogenesis GTPase [Bacillus subtilis BEST7003]
gi|430023492|gb|AGA24098.1| Hypothetical protein YlqF [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 282
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 112/226 (49%), Gaps = 21/226 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ L+DI+ E+ DARIP SS + + + RI++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI--LKNKPRIMLLNKADK 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASSDT 142
A ++W F+ Q S +NS N + + + + LQ +R +
Sbjct: 63 ADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRA-- 120
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ +++GIPNVGKS L N L K A +PG T +K+ +
Sbjct: 121 IRALIIGIPNVGKSTLINRL-----------AKKNIAKTGDRPGITTSQQWVKVGKE--L 167
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+LDTPGIL P+ D V +LA+TGAI DS + +++A + L L
Sbjct: 168 ELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFL 213
>gi|289550966|ref|YP_003471870.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus
lugdunensis HKU09-01]
gi|385784593|ref|YP_005760766.1| putative GTPase protein [Staphylococcus lugdunensis N920143]
gi|418414268|ref|ZP_12987483.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
lugdunensis ACS-027-V-Sch2]
gi|289180498|gb|ADC87743.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus
lugdunensis HKU09-01]
gi|339894849|emb|CCB54146.1| putative GTPase protein [Staphylococcus lugdunensis N920143]
gi|410876875|gb|EKS24772.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
lugdunensis ACS-027-V-Sch2]
Length = 294
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 115/234 (49%), Gaps = 37/234 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R + +++ VD++ E+ DARIP+SS D + P R+++LNK
Sbjct: 5 WYPGHMAKAKREVTEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKS 134
D+ + + +W +F +Q V++ + N+K KF + + L+
Sbjct: 60 KDMTNLKEMSKWEHYFVEQGFYPVAVDAKHGKNLKGVEAAAIEATKDKFAKEQAKGLKPR 119
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ M++GIPNVGKS L N L R A+ G +PG TK +
Sbjct: 120 -------AIRAMIVGIPNVGKSTLINKL---ARKNIAQTGN--------KPGVTKQQQWI 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
K+ + +LDTPGIL P+ D V KL+LTGAI DS V ++A + L L
Sbjct: 162 KVGK--VLQLLDTPGILWPKFEDELVGKKLSLTGAIKDSIVHLDDVAIFVLNFL 213
>gi|358064079|ref|ZP_09150668.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium hathewayi
WAL-18680]
gi|356697712|gb|EHI59283.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium hathewayi
WAL-18680]
Length = 283
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 114/227 (50%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A RA+ + + L+D+I+EV DAR+PFSS + D+L + RI++LNK
Sbjct: 5 WYPGHMTKAKRAMKEDIKLIDLIIEVVDARVPFSSRNPDIDELGQNKA-----RIVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DL++ W +F Q+C VNS + +K+ +Q + + D +
Sbjct: 60 SDLSNERWNDAWAEWFKSQDCHVIKVNSRSGAGLKQINSVVQEACKEKIERDRRRGILNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M++GIPNVGKS NS GK T +PG TK +++ + +
Sbjct: 120 PVRAMVVGIPNVGKSTFINSFA----------GKACTKT-GNKPGVTKGNQWIRL--NKS 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P + EV LA G+I D + +E+A L +
Sbjct: 167 LELLDTPGILWPRFENQEVGLHLAFIGSINDEILNKEEMAVELLKFM 213
>gi|334128047|ref|ZP_08501948.1| ribosome biogenesis GTP-binding protein YlqF [Centipeda periodontii
DSM 2778]
gi|333388369|gb|EGK59548.1| ribosome biogenesis GTP-binding protein YlqF [Centipeda periodontii
DSM 2778]
Length = 296
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 109/212 (51%), Gaps = 21/212 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A R + + + LVD+++E+ DARIP SS LR R++VLNK DL
Sbjct: 15 WYPGHMRKAERLVKENLKLVDVVIELLDARIPMSSANPVLR--EIVGGKPRVIVLNKADL 72
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD----YDASSDT 142
A + W+ F Q + V++ VKE ++ + + +K+D + A +
Sbjct: 73 ADEAATRAWVNCFATQGITAVPVDAVKGRGVKELVQAIAKCAK--QKTDKLVQHGAKARA 130
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
M+LGIPNVGKS+L N R++ K K+ + +PG T+ ++I + +
Sbjct: 131 ARCMILGIPNVGKSSLIN------RLSGGSKTKVEN-----RPGVTRAKQWIRIGAQ--L 177
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSF 234
+LD PGIL P+ D + LA TGAI D+
Sbjct: 178 ELLDMPGILWPKFEDRQAALHLAFTGAINDNV 209
>gi|153812957|ref|ZP_01965625.1| hypothetical protein RUMOBE_03364 [Ruminococcus obeum ATCC 29174]
gi|149830904|gb|EDM85994.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus obeum
ATCC 29174]
Length = 285
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 112/224 (50%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A R + + + L+D+I+E+ DAR+P SS + DQL + R+++LNK
Sbjct: 5 WYPGHMTKAKRQMQEDLKLIDLIIELVDARVPLSSRNPDIDQLGQNKS-----RLILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDY--DASSD 141
DLA Q + W +F ++ V+S N +K +Q + + D +
Sbjct: 60 ADLADERQNEAWKEYFQKRGFHVVKVDSRNGSGMKTIQNVIQEACKEKIERDRRRGIKNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M+ GIPNVGKS N+ GK A +PG TK +++ + N
Sbjct: 120 PIRAMVAGIPNVGKSTFINTFA----------GKA-CAKTGNRPGVTKGKQWIRL--NKN 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D +V +LA G+I D + +ELA + +
Sbjct: 167 VELLDTPGILWPKFEDQQVGIRLACVGSIKDDILNMEELALWLI 210
>gi|300863562|ref|ZP_07108508.1| ribosomal biogenesis GTPase [Oscillatoria sp. PCC 6506]
gi|300338429|emb|CBN53650.1| ribosomal biogenesis GTPase [Oscillatoria sp. PCC 6506]
Length = 284
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 117/231 (50%), Gaps = 27/231 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A R + +++ VD++LEVRDARIP ++ HHP R+LV+
Sbjct: 5 WYPGHIAKAERKLKEQLKRVDVVLEVRDARIPLAT-------HHPQVPMWVGEKARVLVI 57
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEF-LKFLQAHVR-NLRKSDYDAS 139
N+MD+ SP K W +F+ Q + N+ + +V+ + A V+ N R+ D
Sbjct: 58 NRMDMISPRVRKVWEEWFEAQGEVPYFTNAQHGQSVEAVAIAARDAGVKLNQRRRDRGML 117
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
V + +G PNVGKSAL N L +GR R + + G T+ + ++I+
Sbjct: 118 PRPVRAVAIGFPNVGKSALINRL--LGR---------RVVDSARRAGVTRSLQWIRISEE 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNF 250
I +LD PG++P I + E KLA+ IG++ + +A + +L +
Sbjct: 167 --IELLDAPGVIPTRIENQEDAEKLAICEDIGEAAYDNQGIAAAMVDLLTY 215
>gi|192362386|ref|YP_001981932.1| ribosomal biogenesis GTPase [Cellvibrio japonicus Ueda107]
gi|190688551|gb|ACE86229.1| predicted GTPase [Cellvibrio japonicus Ueda107]
Length = 312
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 117/236 (49%), Gaps = 34/236 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + IA+ MP VD+I+EV DAR+PFSSE LR P I +LNK
Sbjct: 6 WFPGHMHKARKDIAEVMPHVDVIIEVIDARLPFSSENPLVPALRGEKPL-----IKLLNK 60
Query: 84 MDLASPTQFKEWITFFDQQN-CPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + W+ +Q+ + V+ + ++ L+ + + V ++ A +
Sbjct: 61 ADLADPATTQRWVEHLEQERGVKALPVSQQRPEQIRNLLQLVTSLVSERQREVRPARA-- 118
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
M++GIPNVGKS + N+L GR+ A + G TK +K+ + I
Sbjct: 119 ---MIMGIPNVGKSTIINTLA--GRVI---------AKTGNEAGVTKAQQKIKLEN--GI 162
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWA 258
+ DTPG L P++ +LA+TGAI D+ ++A Y + +Y KWA
Sbjct: 163 LLTDTPGFLWPKLSPPSCGYRLAITGAIKDTVFDYADIALY-------AADYLKWA 211
>gi|357637896|ref|ZP_09135769.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
urinalis 2285-97]
gi|418416463|ref|ZP_12989662.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
urinalis FB127-CNA-2]
gi|357586350|gb|EHJ55758.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
urinalis 2285-97]
gi|410874281|gb|EKS22212.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
urinalis FB127-CNA-2]
Length = 285
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 120/234 (51%), Gaps = 19/234 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSLNPML--TKIVGDKPKLMILNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN-LRK-SDYDASSDTVT 144
A + K+W F++++ + +NS + VK+ +A + + L+K D T+
Sbjct: 64 ADSQRTKQWRDFYEKKGIKTLSINSKEQSTVKKVTDAAKALMTDKLKKLEDRGIQKQTLR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPN GK+ L N L GK + A V +PG TK LK S+ ++ +
Sbjct: 124 TMIIGIPNAGKTTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDLEI 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKK 256
LDTPGIL P+ D +V KLALTGAI D + ++ + L N+ + KK
Sbjct: 171 LDTPGILWPKFEDEQVGLKLALTGAIKDQLLPMDDVTIFGLNFFKNNYPERLKK 224
>gi|417925852|ref|ZP_12569267.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna
SY403409CC001050417]
gi|341590777|gb|EGS34008.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna
SY403409CC001050417]
Length = 285
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 121/248 (48%), Gaps = 25/248 (10%)
Query: 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLN 82
WY HM A I + M LVDI+L + D+RI SS + + P ++++LN
Sbjct: 7 NWYPGHMKKAIDKIKENMKLVDIVLVLVDSRIVKSSMNPVIEDILKDKP-----QLILLN 61
Query: 83 KMDLASPTQFKEWITFFDQQNC---PSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS 139
KMD+A P + WI +F ++N P G N N D ++ K + V + RK D +
Sbjct: 62 KMDMADPKITQNWINYFAKKNITALPIDGKNGKNLDKIEPTTKKILEDVLSNRK-DKNIK 120
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
S+ + +M++GIPNVGKS + N L + A PG T+ ++I
Sbjct: 121 SEIIRMMIVGIPNVGKSTIINKLSN-----------RQSAKTGNTPGVTRTNQWIRIKGK 169
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAK 259
+ +LDTPG+L P+ D E+ LA TGAI D + + LA + L D +
Sbjct: 170 --MELLDTPGVLWPKFEDNEIGLNLAFTGAIKDEILDEENLAYKLIEKLMSIDPQILEKR 227
Query: 260 FSINQINK 267
+S++ NK
Sbjct: 228 YSVDTQNK 235
>gi|161507469|ref|YP_001577423.1| GTP binding protein [Lactobacillus helveticus DPC 4571]
gi|160348458|gb|ABX27132.1| GTP binding protein [Lactobacillus helveticus DPC 4571]
Length = 283
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 118/241 (48%), Gaps = 26/241 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + D++ L+D+++EV DARIP SS + L + P I++LNK
Sbjct: 6 WYPGHMNKARNQLEDKLGLIDVLVEVLDARIPESSRNPMIEDLVGNKP-----HIIILNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRK--SDYDASSD 141
DLA P K W ++S + N+++ + ++ K AS+
Sbjct: 61 ADLADPVLTKNWSAKLSGPGKYVLAIDSLHNTNMQKLISMVKKAAAEKTKKLEARGASNP 120
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
T+ + L GIPN GKS + N L +GR AE G +PG TK L+ +S N
Sbjct: 121 TIRIALAGIPNCGKSTIINRL--VGR-NVAEVGN--------KPGVTKGQRWLRTSS--N 167
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY-KKWAKF 260
I VLDTPGIL P+ D EV KLA GAI DS ++A Y L N Y K KF
Sbjct: 168 IQVLDTPGILWPKFSDQEVGYKLAAFGAIKDSVFHADDVALYVLE--NLRQHYLKDLTKF 225
Query: 261 S 261
S
Sbjct: 226 S 226
>gi|170726382|ref|YP_001760408.1| ribosomal biogenesis GTPase [Shewanella woodyi ATCC 51908]
gi|169811729|gb|ACA86313.1| GTP-binding protein HSR1-related [Shewanella woodyi ATCC 51908]
Length = 312
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 117/227 (51%), Gaps = 31/227 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + I + MP VD+++EV DARIP+SSE LR P I +LNK
Sbjct: 5 WYPGHMHKARKEIEEVMPQVDLVIEVLDARIPYSSENPVVSSLRGDKPC-----IKLLNK 59
Query: 84 MDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + WI + + +Q + + + VK+ + V + K + D
Sbjct: 60 SDLADPETTQRWIEYLEREQGVKAMAITTLQAAQVKKIPDLCRKFVPSRDKIEKD----- 114
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS + N+L GR T A+ G +P TK +I I
Sbjct: 115 IRTMIMGIPNVGKSTIINTLA--GR-TIAKTGN--------EPAVTK--VQQRINLRNGI 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKEL----AQYFL 245
+ DTPGIL P++ + + +LA+TGAI D+ + +++ A+YFL
Sbjct: 162 VLSDTPGILWPKVDNEKSSYRLAITGAIKDTAMEYEDVAMFAAEYFL 208
>gi|414154250|ref|ZP_11410569.1| Ribosome biogenesis GTPase A [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
gi|411454041|emb|CCO08473.1| Ribosome biogenesis GTPase A [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
Length = 286
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 124/242 (51%), Gaps = 25/242 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + + + LVD+ +E+ DARIP SS +Q+ P R++VLNK
Sbjct: 7 WFPGHMARARRQVQEALKLVDVAIELLDARIPVSSGNPLINQILGQKP-----RLVVLNK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV--RNLRKSDYDASSD 141
DLA P K W+ ++ +++ + +KE + A V + + +
Sbjct: 62 SDLADPALTKLWLKALERPGVKVIALDTLKGEGLKEVPRAAAALVAEQMAKLAARGRRPR 121
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ ++LGIPNVGKS+ N L +GR AA+ G L PG TK +++ +
Sbjct: 122 AIRCLVLGIPNVGKSSFINRL--VGR-KAAKTGDL--------PGVTKGQQWIRVQG--S 168
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKKWAK 259
+ +LDTPGIL P+ D +V KLA+TGAI + E+A LG L ++ D K+ +
Sbjct: 169 LELLDTPGILWPKFEDPQVGYKLAITGAIKEQVFDIYEVAVRLLGWLASHYPDRLKERYR 228
Query: 260 FS 261
S
Sbjct: 229 LS 230
>gi|384135042|ref|YP_005517756.1| ribosome biogenesis GTP-binding protein YlqF [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
gi|339289127|gb|AEJ43237.1| ribosome biogenesis GTP-binding protein YlqF [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 298
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 24/228 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R +A+ + +D+++E+ DAR+P SS D+L H P R++VL +
Sbjct: 11 WFPGHMAKAKRLMAEELRGIDVVVELADARLPVSSRSPVLDELARHKP-----RLVVLTR 65
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN-LRKSDYDASSDT 142
+DLA P W+ F ++ + VN+ + ++EF + L V + + ++
Sbjct: 66 IDLADPRCTDRWVERFHREGVIAIPVNARSGQGLREFRRALDEVVEDKMDRARARGIERA 125
Query: 143 VTV-MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
VT M+ GIPNVGKS N L GR A +PG T+ + +++ +
Sbjct: 126 VTRGMICGIPNVGKSTFVNQLA--GRAV---------AKTGDRPGVTRALQWIRVG---H 171
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+LDTPG+L P++ + E KLA +GAI + E+ Y L L+
Sbjct: 172 TELLDTPGVLAPKLANDEQGLKLAASGAIKEEIFEAYEVCAYVLAYLS 219
>gi|403069205|ref|ZP_10910537.1| hypothetical protein ONdio_06380 [Oceanobacillus sp. Ndiop]
Length = 283
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 24/232 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ LVD ++E+ DAR P SS+ L +++VL K DL
Sbjct: 5 WFPGHMAKARREVEEKLKLVDFVMELVDARAPLSSQNPML--QQVLQHKSKMIVLMKKDL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFL----QAHVRNLRKSDYDASSDT 142
A P + ++WI F ++ P+ V+ +NK ++ ++ Q + L K
Sbjct: 63 ADPRETEKWINHFREKEVPAIAVDVNNKADINRVIQMAKELGQVKMEKLLKKGIKPRPS- 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
M++GIPNVGKS L N L A K + A +PG TK +K+ +
Sbjct: 122 -RAMIVGIPNVGKSTLINRL--------ANK---KIAKTGDRPGITKQQLWIKVKK--DF 167
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V +LA G I D + +++ + ++++ EY
Sbjct: 168 ELLDTPGILWPKFEDQTVGYRLAAIGTIKDQLLSLQDITAF---VIDYMREY 216
>gi|428279199|ref|YP_005560934.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. natto
BEST195]
gi|291484156|dbj|BAI85231.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. natto
BEST195]
Length = 282
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 112/226 (49%), Gaps = 21/226 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ L+DI+ E+ DARIP SS + + + RI++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI--LKNKPRIMLLNKADK 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASSDT 142
A + W F++Q S +NS N + + + + LQ +R +
Sbjct: 63 ADAAVTQRWKEHFEKQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRA-- 120
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ +++GIPNVGKS L N L K A +PG T +K+ +
Sbjct: 121 IRALIIGIPNVGKSTLINRL-----------AKKNIAKTGDRPGITTSQQWVKVGKE--L 167
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+LDTPGIL P+ D V +LA+TGAI DS + +++A + L L
Sbjct: 168 ELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFL 213
>gi|81428605|ref|YP_395605.1| GTP-binding protein [Lactobacillus sakei subsp. sakei 23K]
gi|78610247|emb|CAI55296.1| Putative GTP-binding protein [Lactobacillus sakei subsp. sakei 23K]
Length = 282
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 109/213 (51%), Gaps = 23/213 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HMA A + I +R+ VD+ILE+ DAR+P SS +L + P +L++NK
Sbjct: 5 WYPGHMAKAQKQIKERLKAVDLILEIVDARVPESSINPMIQELGQNKPI-----LLIMNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV--RNLRKSDYDASSD 141
D+A P + ++WI F ++ + +++ +K + K Q + + +K +
Sbjct: 60 ADMADPRRTQQWIETFKKRGITAIALDAQHKAKLPMIEKVAQEILAEKLAKKRAKGIRNP 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M +G+PNVGKS + N L Q A +PG TK+ LK
Sbjct: 120 VIRAMCVGVPNVGKSTILNRLVQKN-----------IAVTGNRPGVTKNQQWLKAGQ--T 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSF 234
+ +LDTPG+L P+ D + SKLALTGAI D+
Sbjct: 167 LELLDTPGVLWPKFEDPTIGSKLALTGAISDAI 199
>gi|374287713|ref|YP_005034798.1| putative GTPase [Bacteriovorax marinus SJ]
gi|301166254|emb|CBW25829.1| putative GTPase [Bacteriovorax marinus SJ]
Length = 324
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 118/232 (50%), Gaps = 25/232 (10%)
Query: 23 KGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLN 82
K W+ HMA A + + +++ +VDI+LE+RDARIP S + L+ + R++VLN
Sbjct: 42 KAFNWFPGHMAKAMKQVGEKLKMVDIVLELRDARIPLLSGNEDLK--KVLGNKCRLIVLN 99
Query: 83 KMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
K++L P + +W +FD +N +++ V K + R + ++ AS +
Sbjct: 100 KVNLCDPEKLADWKKWFDDNGEHHIFINVLDRNAV----KLITEKSREIVVANRIASGGS 155
Query: 143 ------VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI 196
+M++G+PN GKS L NSL G + A +PG T+ +K+
Sbjct: 156 GEKTRKFRMMMVGLPNTGKSTLINSL-----------GGRKAAKSGDKPGLTQSQQWIKL 204
Query: 197 ASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
A +I +LDTPGI+P +I E L T AI D +G +E+A + + L
Sbjct: 205 AG--DIELLDTPGIMPRKIETREEGMWLCATHAIKDQILGQEEVACFVVEYL 254
>gi|239623746|ref|ZP_04666777.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239521777|gb|EEQ61643.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 287
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 113/227 (49%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A RA+ + + L+D+++E+ DAR+P SS + D L R+++LNK
Sbjct: 5 WYPGHMTKAKRAMKEDIKLIDLVIELVDARVPLSSRNPDIDDL-----AKGKARMVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DLA +W +F+ +N + V+S NK +K+ +Q + + D +
Sbjct: 60 SDLADERVNAQWAAWFEAKNIHAVKVDSRNKGTLKQVQSVVQEACKEKIERDRKRGIMNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS NS G+ A K PG TK +++ +
Sbjct: 120 PIRTMVVGIPNVGKSTFINSFA--GKACAKTGNK---------PGVTKGNQWIRL--NKT 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P D V KLAL G+I D + +LA + IL
Sbjct: 167 LELLDTPGILWPRFEDQSVGLKLALIGSINDQILNKDDLACQCIRIL 213
>gi|119946103|ref|YP_943783.1| ribosomal biogenesis GTPase [Psychromonas ingrahamii 37]
gi|119864707|gb|ABM04184.1| Ras superfamily GTP-binding protein YlqF [Psychromonas ingrahamii
37]
Length = 312
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 117/236 (49%), Gaps = 29/236 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + I + +P VDII+EV DARIP+SSE +R + P I VLNK
Sbjct: 8 WFPGHMHKAHKQIKEVLPQVDIIIEVVDARIPYSSENPLIAHIRENTPC-----IKVLNK 62
Query: 84 MDLASPTQFKEWITFFDQ-QNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P +WIT+ +Q Q + + + + V + K + + + D
Sbjct: 63 SDLADPEITAQWITYLEQEQGIKALAITTSKPEQVHQITKLCEQMLPHKLGQD-----KQ 117
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS + N L RI A +P TK +++ S I
Sbjct: 118 IRAMIMGIPNVGKSTIINILAD--RII---------AKTGNEPAVTKQQQRIRLPS--GI 164
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKK 256
+ DTPG L P+I + +LA+TGAI D+ + +++A Y L N+ + KK
Sbjct: 165 MLSDTPGFLWPKIENANSGYRLAVTGAIKDTAIEYEDIAYYAAEYLLANYPERLKK 220
>gi|302380886|ref|ZP_07269348.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna
ACS-171-V-Col3]
gi|302311264|gb|EFK93283.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna
ACS-171-V-Col3]
Length = 285
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 122/248 (49%), Gaps = 25/248 (10%)
Query: 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLN 82
WY HM A I + M LVDI+L + D+RI SS + + P ++++LN
Sbjct: 7 NWYPGHMKKAIDKIKENMKLVDIVLVLVDSRIVRSSMNPVIEDILKDKP-----QLILLN 61
Query: 83 KMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEF---LKFLQAHVRNLRKSDYDAS 139
KMD+A P + WI +F ++N + ++S N N+ + K + V + RK D +
Sbjct: 62 KMDMADPKITQNWINYFAKKNITALPIDSKNGKNLDKIEPTTKKILEDVLSSRK-DKNIK 120
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
S+ + +M++GIPNVGKS + N L + A PG T+ ++I
Sbjct: 121 SEIIRMMIVGIPNVGKSTIINKLSN-----------RQSAKTGNTPGVTRTNQWIRIKGK 169
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAK 259
+ +LDTPG+L P+ D E+ LA TGAI D + + LA + L D +
Sbjct: 170 --MELLDTPGVLWPKFEDNEIGLNLAFTGAIKDEILDEENLAYKLIEKLMSIDSQILEKR 227
Query: 260 FSINQINK 267
+S++ NK
Sbjct: 228 YSVDTQNK 235
>gi|297544724|ref|YP_003677026.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842499|gb|ADH61015.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 277
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 120/240 (50%), Gaps = 17/240 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA + + I + LVD+I E+ DARIP SS + + + +R+++LNK DL
Sbjct: 4 WYPGHMAKSKKEIVSNLKLVDVIYEIVDARIPKSSRNPDIDD--IVKNKKRLILLNKADL 61
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN-LRKSDYDASSDTVTV 145
A WI +F ++ + VNS +KE + Q ++ L K +
Sbjct: 62 ADDVITDLWIEYFKEKGIEAIKVNSITGFGLKEINEATQRVCQDILEKKRQKGMIPRLRG 121
Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVL 205
+++G+PNVGKS N L IG + A +PG T+ ++ +K P +L
Sbjct: 122 IIVGVPNVGKSTFINKL--IGS---------KRAKTGDKPGVTRTLHWIK---TPYFDIL 167
Query: 206 DTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQI 265
DTPGIL P+ D E LA+TGAI D + +E+A + +L + +++ I++I
Sbjct: 168 DTPGILWPKFDDKETGIMLAITGAIKDEILNIEEIALNLVAVLKKYYPHYLMSRYKIDKI 227
>gi|345017764|ref|YP_004820117.1| hypothetical protein Thewi_1411 [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344033107|gb|AEM78833.1| LOW QUALITY PROTEIN: hypothetical protein Thewi_1411
[Thermoanaerobacter wiegelii Rt8.B1]
Length = 277
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 113/223 (50%), Gaps = 17/223 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA + + I + LVD++ E+ DARIP SS + + + +RI++LNK DL
Sbjct: 4 WYPGHMAKSKKEIVSNLKLVDVVYEIVDARIPKSSRNPDIDDI--VKNKKRIILLNKADL 61
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN-LRKSDYDASSDTVTV 145
A WI +F ++ + VNS +KE + Q ++ L K +
Sbjct: 62 ADDVITDLWIEYFKEKGIEAVKVNSITGFGLKEINEATQRVCQDILDKKKQKGMIPRLRG 121
Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVL 205
M++G+PNVGKS N L IG + A +PG T+ ++ +K P +L
Sbjct: 122 MIVGVPNVGKSTFINKL--IGS---------KRAKTGDKPGVTRALHWIK---TPYFDLL 167
Query: 206 DTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
DTPGIL P+ D +V LA+TGAI D + +E+A + IL
Sbjct: 168 DTPGILWPKFDDKKVGVMLAITGAIKDEILDIEEIALNLVAIL 210
>gi|357038748|ref|ZP_09100545.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
gibsoniae DSM 7213]
gi|355359540|gb|EHG07302.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
gibsoniae DSM 7213]
Length = 282
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 113/226 (50%), Gaps = 23/226 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA A R + + +VD+++E+ DARIP SS + + R++VLNK DL
Sbjct: 5 WYPGHMAKARRQVQQNLQMVDVVIELLDARIPASSRNPDI--NAILKDKPRLVVLNKSDL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS---SDTV 143
A P W+ +F + P+ V++H+ VK+ + + + K Y A +
Sbjct: 63 ADPEITAVWLDYFTSKGLPAVAVDAHHGAGVKKMVALTERLAQPAIKK-YMARGRLARLA 121
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++G+PNVGKS L N L GK + A +PG T+ +K+ +
Sbjct: 122 RCMVVGVPNVGKSMLINRLA----------GK-KAARTGNRPGVTRGEQWIKLGG--KLE 168
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKE----LAQYFL 245
+LDTPGIL P+ D E KLA+TGAI + +E L Q+ L
Sbjct: 169 LLDTPGILWPKFEDPETAYKLAVTGAIKEQIYNPEEICTKLVQWLL 214
>gi|291542666|emb|CBL15776.1| Ras superfamily GTP-binding protein YlqF [Ruminococcus bromii
L2-63]
Length = 290
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 120/235 (51%), Gaps = 28/235 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HM R I + LVD + E+ DARIP SS + +L + P R+++LNK
Sbjct: 9 WFPGHMTKTKRQIQSSLKLVDAVAEIIDARIPVSSRNPDLAKLVQNKP-----RVILLNK 63
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEF---LKFLQAHVRNLRKSDYDASS 140
D+A+ T K WI +F +QN + V+ + + +F + + +H + R + +
Sbjct: 64 CDMANQTATKMWIDYFKKQNLVAIPVDCKSGRGLDKFAPAVNTVMSH-KIARLKEKGMVN 122
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
T+ +M++GIPNVGKS+ N + + R A V +PG T+ IA
Sbjct: 123 PTIRIMIVGIPNVGKSSFINKMVKKNR-----------AKVEDRPGVTRGNQWYTIAK-- 169
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYK 255
N+ +LDTPG+L P+ D V LA TGA+ D + + LA + +L+F E K
Sbjct: 170 NLEMLDTPGVLWPKFDDKTVGEHLAFTGAVKDQILDIELLA---VRLLDFIKELK 221
>gi|307244391|ref|ZP_07526502.1| ribosome biogenesis GTP-binding protein YlqF [Peptostreptococcus
stomatis DSM 17678]
gi|306492210|gb|EFM64252.1| ribosome biogenesis GTP-binding protein YlqF [Peptostreptococcus
stomatis DSM 17678]
Length = 294
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 108/214 (50%), Gaps = 23/214 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM + + + LVD+++E+ DARIP SS + D+L P RI++LNK
Sbjct: 17 WYPGHMKKTRELVQNNLKLVDVVIELLDARIPLSSKNPDIDRLVGDKP-----RIVLLNK 71
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKS--DYDASSD 141
D+ W+ +F +++ + +N+ V + + +A R++ +S +
Sbjct: 72 ADMCEKPAIDAWVAYFAKEDVKAIPINAMTGTGVNKVISECKAVTRSMMESLAEKGRRER 131
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ +M++G+PNVGKS+L N L GR R +PG TK +KI +
Sbjct: 132 AIRIMIVGVPNVGKSSLINKLS--GR---------RSTQTGDRPGVTKGKQWVKIRG--D 178
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFV 235
+ +LDTPGIL P+ D EV LA T AI D +
Sbjct: 179 MELLDTPGILWPKFEDQEVALNLAFTRAIKDEIL 212
>gi|209809448|ref|YP_002264986.1| ribosomal biogenesis GTPase [Aliivibrio salmonicida LFI1238]
gi|208011010|emb|CAQ81423.1| putative GTP-binding protein [Aliivibrio salmonicida LFI1238]
Length = 311
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 113/226 (50%), Gaps = 27/226 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + IA+ +P +D+I+EV DARIPFSSE LR P I VLNK
Sbjct: 5 WYPGHMHKAQKEIAEVIPKMDVIIEVLDARIPFSSENPMIASLRQDKPC-----IKVLNK 59
Query: 84 MDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + WI + +Q + V ++N D + + ++ + V +A
Sbjct: 60 RDLADPEVTQLWIEHLEKEQGVTAMAVTTNNPDEIHKIMERCRKLV-----PHREAMGKN 114
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
V M++GIPNVGKS + N+L GR+ A QP T+ +I +
Sbjct: 115 VRTMIMGIPNVGKSTIINTLA--GRMI---------AITGNQPAVTR--RQQRINLQNGV 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ DTPGIL P++ + +LA TGA+ D+ + E+A Y + L
Sbjct: 162 VLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYL 207
>gi|345019909|ref|ZP_08783522.1| hypothetical protein OTW25_01110 [Ornithinibacillus scapharcae
TW25]
Length = 282
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 113/226 (50%), Gaps = 21/226 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R I +++ LVD ++E+ DAR P SS+ L + ++++L K DL
Sbjct: 5 WFPGHMAKARREIEEKLKLVDFVMELVDARAPLSSQNPML--QQVLQNKSKMILLMKRDL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFL----QAHVRNLRKSDYDASSDT 142
A EWI +F +++ P+ VN ++K +V + ++ Q + L + +
Sbjct: 63 ADVQVTNEWIKYFQERDIPALAVNVNDKSDVNKVIQLAKELGQKKLDKLIQKGIQPRAS- 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
M++GIPNVGKS L N L A K + A V +PG TK +K+
Sbjct: 122 -RAMIVGIPNVGKSTLINRL--------ANK---KIAKVGDRPGVTKQQLWIKVKKE--F 167
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+LDTPGIL P+ D V +LA G I D + +++ + + L
Sbjct: 168 ELLDTPGILWPKFEDQTVGYRLAAIGTIKDQLLSLQDIVVFVIRYL 213
>gi|258511349|ref|YP_003184783.1| ribosome biogenesis GTP-binding protein YlqF [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478075|gb|ACV58394.1| ribosome biogenesis GTP-binding protein YlqF [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 292
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 28/230 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R +A+ + +D+++E+ DAR+P SS D+L + P R++VL +
Sbjct: 5 WFPGHMAKAKRLMAEELRGIDVVVELADARLPVSSRSPVLDELARNKP-----RLMVLTR 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLK----FLQAHVRNLRKSDYDAS 139
+DLA P ++W+ F ++ + VN+ ++EF + F++A + R + +
Sbjct: 60 VDLADPHCTEQWVERFQREGVIAIPVNARTGQGLREFRRALDEFVEAKMNRARARGIERA 119
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
M+ GIPNVGKS N L GR A +PG T+ + +++
Sbjct: 120 --VTRGMICGIPNVGKSTFVNQLA--GRAV---------AKTGDRPGVTRSLQWIRVG-- 164
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+LDTPG+L P++ + E KLA +GA+ + E+ Y L L+
Sbjct: 165 -RTELLDTPGVLAPKLANDEQGLKLAASGAVKEEIFEAYEVCAYVLAYLS 213
>gi|383936786|ref|ZP_09990206.1| ribosome biogenesis GTPase A [Rheinheimera nanhaiensis E407-8]
gi|383702113|dbj|GAB60297.1| ribosome biogenesis GTPase A [Rheinheimera nanhaiensis E407-8]
Length = 311
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 114/223 (51%), Gaps = 31/223 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + IA+ MP VDII+E+ DARIPFSSE QLR P I VLNK
Sbjct: 5 WFPGHMHKARKEIAEVMPQVDIIIEMLDARIPFSSENPLVPQLRRGTPC-----IKVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQN-CPSFGVNSHNKDNVKEFLKFLQAHV--RNLRKSDYDASS 140
DLA P W+ FD Q+ + ++ N + ++ L+ + RNL A
Sbjct: 60 ADLADPALTARWVAHFDSQSGIKAIPISQQNPEQIRALLQLCNEMLPERNLDIRGARA-- 117
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
M++GIPNVGKS L N+L GR T A+ G + G TK +K+ +
Sbjct: 118 -----MIMGIPNVGKSTLINTLA--GR-TIAKTGN--------EAGVTKMQQRIKLDN-- 159
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
N+ + DTPG L P++ +LA+TGAI D+ ++A +
Sbjct: 160 NVILTDTPGFLWPKLSPPTCGYRLAVTGAIKDTVFDYADIAMF 202
>gi|224476369|ref|YP_002633975.1| ribosomal biogenesis GTPase [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420976|emb|CAL27790.1| putative GTPase [Staphylococcus carnosus subsp. carnosus TM300]
Length = 289
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 120/234 (51%), Gaps = 29/234 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D++ + P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNSMIDEVIQNKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLR-KSDYDASSD- 141
D+A+ ++ +W +F + V++ + +K+ QA + + K + D +
Sbjct: 60 KDMANLSEISKWKDYFRSKGYYPVAVDAKHGKGLKQ---VEQAAIEATKEKFERDKAKGL 116
Query: 142 ---TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
+ M++GIPNVGKS L N L A K A PG TK +K+
Sbjct: 117 KPRAIRAMIVGIPNVGKSTLINKL--------ANKA---IAKTGNTPGVTKQQQWIKVGK 165
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSD 252
++ +LDTPGIL P+ D V KL+LTGAI DS V ++A Y L D
Sbjct: 166 --SLQLLDTPGILWPKFEDQTVGKKLSLTGAIKDSIVHLDDVAIYGLDFFKEHD 217
>gi|210615858|ref|ZP_03290820.1| hypothetical protein CLONEX_03039 [Clostridium nexile DSM 1787]
gi|210150061|gb|EEA81070.1| hypothetical protein CLONEX_03039 [Clostridium nexile DSM 1787]
Length = 283
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 118/247 (47%), Gaps = 23/247 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A R + + + L+D+++E+ DAR+P SS + D+L + R+++LNK
Sbjct: 5 WYPGHMTKAKRMMQENIKLIDLVIELVDARVPISSRNPDIDELGKNKA-----RLILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DLA Q W +F ++ VNS +K +Q + + D +
Sbjct: 60 SDLAEDKQNDAWAEYFKKKGFAVVKVNSKKGGGIKSIQGVIQEACKEKMERDRKRGILNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M++GIPNVGKS NSL G+ A K PG TK +++ + N
Sbjct: 120 PVRAMVVGIPNVGKSTFINSLA--GKACAKTGNK---------PGVTKGKQWIRL--NKN 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
+ +LDTPGIL P+ D V +LA G+I D + +ELA + + K++
Sbjct: 167 VELLDTPGILWPKFEDQTVGLRLAFIGSIKDEILNTEELAAELIQFMKKHYAGVLAEKYA 226
Query: 262 INQINKP 268
I ++ P
Sbjct: 227 ITEVEDP 233
>gi|227879126|ref|ZP_03997010.1| GTP-binding protein [Lactobacillus crispatus JV-V01]
gi|256850242|ref|ZP_05555671.1| GTP binding protein [Lactobacillus crispatus MV-1A-US]
gi|293380235|ref|ZP_06626316.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
crispatus 214-1]
gi|312977294|ref|ZP_07789042.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
crispatus CTV-05]
gi|423318747|ref|ZP_17296624.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
crispatus FB049-03]
gi|423321615|ref|ZP_17299486.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
crispatus FB077-07]
gi|227861283|gb|EEJ68918.1| GTP-binding protein [Lactobacillus crispatus JV-V01]
gi|256712879|gb|EEU27871.1| GTP binding protein [Lactobacillus crispatus MV-1A-US]
gi|290923202|gb|EFE00124.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
crispatus 214-1]
gi|310895725|gb|EFQ44791.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
crispatus CTV-05]
gi|405593395|gb|EKB66845.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
crispatus FB049-03]
gi|405593736|gb|EKB67176.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
crispatus FB077-07]
Length = 279
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 122/246 (49%), Gaps = 25/246 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + D++ L+D+++EV DARIP +S + L + P I++LNK
Sbjct: 6 WYPGHMNKARNQLEDKLGLIDVLVEVLDARIPQASRNPMIEGLVGNKP-----HIIILNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
DLA P K W N ++S + N+++ + ++ + AS+
Sbjct: 61 ADLADPVLTKAWAAELAGDNKYVLALDSLHNTNMQKLVSLVKKAAAAKTEKLEARGASNP 120
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
T+ + L GIPN GKS + N L +GR A V +PG TK LK ++ N
Sbjct: 121 TIRIALAGIPNCGKSTVINRL--VGR---------NVAEVGNKPGVTKGQRWLK--TNAN 167
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKWAK 259
I VLDTPGIL P+ D EV KLA GAI DS ++A + L L ++ + K++K
Sbjct: 168 IQVLDTPGILWPKFSDQEVGYKLAAFGAIKDSVFHADDVALFVLKNLREFYAKDLLKFSK 227
Query: 260 FSINQI 265
QI
Sbjct: 228 LPEQQI 233
>gi|227513335|ref|ZP_03943384.1| GTP-binding protein [Lactobacillus buchneri ATCC 11577]
gi|227524478|ref|ZP_03954527.1| GTP-binding protein [Lactobacillus hilgardii ATCC 8290]
gi|227083208|gb|EEI18520.1| GTP-binding protein [Lactobacillus buchneri ATCC 11577]
gi|227088348|gb|EEI23660.1| GTP-binding protein [Lactobacillus hilgardii ATCC 8290]
Length = 290
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 109/224 (48%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + + LVDI+ EV DARIP++S E ++ P + +L K
Sbjct: 7 WFPGHMAKAIRQFEENIGLVDIVFEVIDARIPYASQNPEVARITGEKP-----HLFILTK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV--RNLRKSDYDASSD 141
DLA P + W+ F + P+ V++ K N+ L + + + R+
Sbjct: 62 KDLADPRLTQRWLDSFKSKGQPAIAVDAKTKFNIGNVLSVISPLLSEKLAREEQKGMKKR 121
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ + +G+PNVGKS + N L + R R A V +PG TK LK
Sbjct: 122 PIRAISVGVPNVGKSTVLNRL--VNR---------RAAQVGNRPGVTKGQQWLKAGKE-- 168
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ E +KLALTGAI DS ++A + L
Sbjct: 169 LELLDTPGILWPKFESQETANKLALTGAIKDSVFASDDIALFGL 212
>gi|406670839|ref|ZP_11078084.1| ribosome biogenesis GTP-binding protein YlqF [Facklamia hominis
CCUG 36813]
gi|405582355|gb|EKB56361.1| ribosome biogenesis GTP-binding protein YlqF [Facklamia hominis
CCUG 36813]
Length = 282
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 114/236 (48%), Gaps = 31/236 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRN---HHPFSSSRRILVLNK 83
WY HMA A R +++ LVD+++E+ DARIP SS RN +L+LNK
Sbjct: 6 WYPGHMAKAKREAQEKIKLVDLVIELADARIPESS-----RNPIIQEIIGQKPSLLILNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
DLA P + W ++ Q + +++ + + K + +Q +++ ++
Sbjct: 61 ADLADPATTRAWEDYYRSQGQQALSLDAQHLRSTKAINRVIQDQMQDFFAKRKAKGIKPR 120
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ +M+LGIPNVGKS L N +G+ A +PG TK LKI
Sbjct: 121 AIRLMILGIPNVGKSTLINRF--VGK---------NQAQTGNKPGVTKAQRWLKIGKE-- 167
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELA--------QYFLGILN 249
+LDTPGIL P+ D LALTGAI D + +ELA Q++ G+L
Sbjct: 168 FELLDTPGILWPKFEDPMTGHHLALTGAIKDQLLPMQELALVLIEQLRQHYPGLLE 223
>gi|157375773|ref|YP_001474373.1| ribosomal biogenesis GTPase [Shewanella sediminis HAW-EB3]
gi|157318147|gb|ABV37245.1| GTP-binding protein, HSR1-related [Shewanella sediminis HAW-EB3]
Length = 312
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 117/227 (51%), Gaps = 31/227 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + I + MP VD+++EV DARIP+SSE LR P I +LNK
Sbjct: 5 WYPGHMHKARKEIEEVMPQVDLVIEVLDARIPYSSENPVVSTLRGDKPC-----IKLLNK 59
Query: 84 MDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + WI + + +Q + + + VK+ + V + K + D
Sbjct: 60 SDLADPETTQRWIEYLEREQGVKAMAITTLQAAQVKKIPDLCRKFVPSRDKLEKD----- 114
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS + N+L GR T A+ G +P TK +I I
Sbjct: 115 IRTMIMGIPNVGKSTIINTLA--GR-TIAKTGN--------EPAVTK--VQQRINLRNGI 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKEL----AQYFL 245
+ DTPGIL P++ + + +LA+TGAI D+ + +++ A+YFL
Sbjct: 162 VLSDTPGILWPKVDNEKSSYRLAITGAIKDTAMEYEDVAMFAAEYFL 208
>gi|366053163|ref|ZP_09450885.1| GTP-binding protein YlqF [Lactobacillus suebicus KCTC 3549]
Length = 289
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 108/219 (49%), Gaps = 17/219 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R I ++M LVDI+ E+ DAR+P+SS +++ +L++ K+DL
Sbjct: 6 WFPGHMAKALRQIREQMSLVDIVFELVDARLPYSSLNPEIKK--AMGDKPHVLIMTKLDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A +WI +F P V+S ++ K Q + + + D S +
Sbjct: 64 ADNNITNDWINYFTDHGLPVIAVDSRDRKVASIVTKKAQEVLSDKIAKNEDKGLSKRAIR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M +G+PNVGKS L N L K A +PG T L+++S N+ +
Sbjct: 124 AMCVGVPNVGKSTLLNHL-----------VKRNVANTGNRPGVTTGQQWLRLSS--NLEL 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
LDTPG+L P+ E+ KLAL+G I DS ++A +
Sbjct: 171 LDTPGVLWPKFQTQEIGVKLALSGTIKDSLFPKDDVALF 209
>gi|255655269|ref|ZP_05400678.1| putative GTPase [Clostridium difficile QCD-23m63]
gi|296451254|ref|ZP_06892994.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
NAP08]
gi|296880394|ref|ZP_06904357.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
NAP07]
gi|296259860|gb|EFH06715.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
NAP08]
gi|296428635|gb|EFH14519.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
NAP07]
Length = 298
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 120/242 (49%), Gaps = 23/242 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM + + + L+D+++E+ DARIPFSS + D+L P R++VLNK
Sbjct: 18 WYPGHMKKTKELVKNNLKLIDVVIELLDARIPFSSKNPDIDRLVGDKP-----RVVVLNK 72
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKS--DYDASSD 141
D+A + +WI ++ + N + V++ + + ++ + R S D
Sbjct: 73 SDMADKDKLNQWIEYYKKINIKAIPVDTIKGVGINKIIEECKNVTREKMSSLKDKGRKER 132
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ +M++G+PNVGKS+L N L GR + +PG TK +++ N
Sbjct: 133 AIRIMIVGVPNVGKSSLINKLT--GR---------KSTQTGDKPGVTKGKQWVRLKG--N 179
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
+ +LDTPGIL P+ D EV LA + AI D + + LA + L + K A++
Sbjct: 180 LELLDTPGILWPKFEDQEVALNLAFSRAIKDEILDTETLALKLIEKLMKIEPEKLKARYK 239
Query: 262 IN 263
++
Sbjct: 240 LD 241
>gi|320168383|gb|EFW45282.1| mitochondrial GTPase 1 [Capsaspora owczarzaki ATCC 30864]
Length = 359
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 117/240 (48%), Gaps = 12/240 (5%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA R IA + +D ++EV DAR+P S L+ S+ L+LNKMDL
Sbjct: 20 WFPGHMARGMREIARNLQHIDYVIEVHDARVPVSGRNPLLQALQKPST----LLLNKMDL 75
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV-RNLRKSDYDASSDTVTV 145
P K + N V + ++ L + H+ N+ D + +
Sbjct: 76 GDPAVNKIAKARLHEINPRHNVVLTSATLRLERALTLVVDHILANVPAERADKDGEGIHA 135
Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYV 204
M++G+PNVGKS+ N+L R+ E + A V P PG T+ + L I+ P I +
Sbjct: 136 MIVGMPNVGKSSTINALR---RLLTGEGAR---AKVGPIPGITRAVMQPLHISRDPKIML 189
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
+DTPGI+ P I +VEV KLA G D VG +A Y L LN ++ +++++Q
Sbjct: 190 IDTPGIMAPHIPNVEVGLKLAAVGTFIDHQVGEALIADYILFSLNLRRKFDYVKRYNMDQ 249
>gi|86606591|ref|YP_475354.1| ribosomal biogenesis GTPase [Synechococcus sp. JA-3-3Ab]
gi|86555133|gb|ABD00091.1| GTPase family protein [Synechococcus sp. JA-3-3Ab]
Length = 289
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 110/224 (49%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY H+A A + +++ LVD+ +EV DARIP +S E D+ P R+L LN+
Sbjct: 8 WYPGHVAKAIGQLREQLRLVDVAIEVVDARIPLASRHPELDKWLGEKP-----RLLALNR 62
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFL--QAHVRNLRKSDYDASSD 141
D + K W F QQ P + N + + V + + N R+ +
Sbjct: 63 ADSIAARDLKAWQEHFSQQGIPVYPTNGQSGEGVPRLKQAILQMGQAVNERRQRWGMRPR 122
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V +++G PNVGKSAL N L +GR R + +PG T+ + +++
Sbjct: 123 AVRAVVVGFPNVGKSALLNRL--LGR---------RAVESAARPGVTRQLQWVRLGGE-- 169
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LD+PGILPP + D + S LA+ IG + +++A YF+
Sbjct: 170 LDLLDSPGILPPSLPDQQAASLLAICDDIGAAAYDPEQVAAYFV 213
>gi|320168412|gb|EFW45311.1| mitochondrial GTPase 1 [Capsaspora owczarzaki ATCC 30864]
Length = 359
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 117/240 (48%), Gaps = 12/240 (5%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA R IA + +D ++EV DAR+P S L+ S+ L+LNKMDL
Sbjct: 20 WFPGHMARGMREIARNLQHIDYVIEVHDARVPVSGRNPLLQALQKPST----LLLNKMDL 75
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV-RNLRKSDYDASSDTVTV 145
P K + N V + ++ L + H+ N+ D + +
Sbjct: 76 GDPAVNKIAKARLHEINPRHNVVLTSATLRLERALTLVVDHILANVPAERADKDGEGIHA 135
Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYV 204
M++G+PNVGKS+ N+L R+ E + A V P PG T+ + L I+ P I +
Sbjct: 136 MIVGMPNVGKSSTINALR---RLLTGEGAR---AKVGPIPGITRAVMQPLHISRDPKIML 189
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
+DTPGI+ P I +VEV KLA G D VG +A Y L LN ++ +++++Q
Sbjct: 190 IDTPGIMAPHIPNVEVGLKLAAVGTFIDHQVGEALIADYILFSLNLRRKFDYVKRYNMDQ 249
>gi|334119114|ref|ZP_08493201.1| ribosome biogenesis GTP-binding protein YlqF [Microcoleus vaginatus
FGP-2]
gi|333458585|gb|EGK87202.1| ribosome biogenesis GTP-binding protein YlqF [Microcoleus vaginatus
FGP-2]
Length = 284
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 19/225 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H+A A RA+ +++ VD++LEVRDARIP ++ Q+ + R+LV+N+MD+
Sbjct: 5 WYPGHIAKAERALKEQLKRVDVVLEVRDARIPLATFHPQMPSW--VGGKARVLVINRMDM 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNS---HNKDNVKEFLKFLQAHVRNLRKSDYDASSDTV 143
+P + W T+F+ Q ++ N+ H D V + ++ + N R+ D V
Sbjct: 63 ITPRSREAWETWFEAQGETAYFTNAEHGHGVDAVADAVQNAGVQL-NQRRFDRGMLPRPV 121
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
+++G PNVGKSAL N L +GR R + + G TK + ++I+ I
Sbjct: 122 RAVVMGFPNVGKSALINRL--LGR---------RVVDSARRAGVTKSLRWIRISDE--IE 168
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+LD PG++P I++ E KLA+ IG++ + +A + +L
Sbjct: 169 LLDAPGVIPTRINNQENALKLAICEDIGEAAYDNQVVAAAMVDLL 213
>gi|428769845|ref|YP_007161635.1| Ras superfamily GTP-binding protein YlqF [Cyanobacterium aponinum
PCC 10605]
gi|428684124|gb|AFZ53591.1| Ras superfamily GTP-binding protein YlqF [Cyanobacterium aponinum
PCC 10605]
Length = 280
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 17/224 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H++ A R + +++ VD++LEVRDARIP +S QL+ R+LVLN+ D+
Sbjct: 6 WYPGHISKAERQLKEQLKRVDVVLEVRDARIPLASHHPQLKQW--IGDKPRLLVLNREDM 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVR--NLRKSDYDASSDTVT 144
S + KEW +F Q F N+ + VK K Q+ + N R+ V
Sbjct: 64 ISDSLRKEWQEWFGAQGEIPFFTNAKDGKGVKAVKKASQSMEKQVNERRRSRGMLPRPVR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
+++G PNVGKSAL N L Q + +A K G TK + ++I+ + +
Sbjct: 124 AVVIGFPNVGKSALINRLLQRKIVASARKA-----------GVTKQLQWVRISDQ--LEL 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
LD PG++P ++ + E KLA+ IG++ + +A F+ +L
Sbjct: 171 LDAPGVIPWKLENQEDALKLAICEDIGEAAYDNQLVAADFVDLL 214
>gi|402836326|ref|ZP_10884866.1| ribosome biogenesis GTP-binding protein YlqF [Mogibacterium sp.
CM50]
gi|402271422|gb|EJU20666.1| ribosome biogenesis GTP-binding protein YlqF [Mogibacterium sp.
CM50]
Length = 295
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 115/232 (49%), Gaps = 25/232 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRN---HHPFSSSRRILVLNK 83
WY HM I + + VD+++E+ D+RIP SS RN + +R+++L K
Sbjct: 7 WYPGHMKKTRELIQENLKTVDLVVEIVDSRIPLSS-----RNPIIEELVAGKKRVVILGK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTV 143
DLA + EW F + + V+S N DN+K F L + + + A +
Sbjct: 62 FDLADESVTMEWKAFLGRNGIIALPVDSRNGDNIKAFYTILDKYQQE--RDRERALKRPL 119
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
+M++G+PNVGKS+ N L IGR + A +PG TK + +A+ +
Sbjct: 120 RMMIVGVPNVGKSSFINRL--IGR---------KSAKTGDRPGVTKGKQWVTLAN--GMQ 166
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDE 253
+LDTPGIL P+ + V LA G+I D + ++LA L +L N+ DE
Sbjct: 167 LLDTPGILWPKFEEPGVGLNLAFCGSIKDEILNVQDLAFELLKVLRANYPDE 218
>gi|297587482|ref|ZP_06946126.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna ATCC
53516]
gi|297574171|gb|EFH92891.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna ATCC
53516]
Length = 285
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 122/249 (48%), Gaps = 27/249 (10%)
Query: 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLN 82
WY HM A I + M LVDI+L + D+RI SS + + P ++++LN
Sbjct: 7 NWYPGHMKKAIDKIKENMKLVDIVLVLVDSRIVKSSMNPVIEDILKDKP-----QLILLN 61
Query: 83 KMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEF----LKFLQAHVRNLRKSDYDA 138
KMD+A P + WI +F ++N + ++S N N+ + K L+ + N + D +
Sbjct: 62 KMDMADPKITQNWINYFAKKNITALPIDSKNGRNLDKIEPTAKKILEDVLAN--RKDKNI 119
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
S+ + +M++GIPNVGKS + N L + A PG T+ ++I
Sbjct: 120 KSEIIRMMIVGIPNVGKSTIINKLSN-----------RQSAKTGNTPGVTRSNQWIRIKG 168
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWA 258
+ +LDTPG+L P+ D E+ LA TGAI D + + LA + L D
Sbjct: 169 K--MELLDTPGVLWPKFEDNEIGLNLAFTGAIKDEILDEENLAYKLIEKLMSIDPQILEK 226
Query: 259 KFSINQINK 267
++S++ NK
Sbjct: 227 RYSVDTQNK 235
>gi|398310701|ref|ZP_10514175.1| GTPase YlqF [Bacillus mojavensis RO-H-1]
Length = 282
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 111/226 (49%), Gaps = 21/226 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ L+DI+ E+ DARIP SS + + + RI++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI--LKNKPRIMLLNKADK 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASSDT 142
A ++W F+ Q S +NS N + + + LQ +R +
Sbjct: 63 ADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKDILQEKFDRMRAKGVKPRA-- 120
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ +++GIPNVGKS L N L K A +PG T +K+ +
Sbjct: 121 IRALIIGIPNVGKSTLINRL-----------AKKNIAKTGDRPGITTSQQWVKVGKE--L 167
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+LDTPGIL P+ D V +LA+TGAI DS + +++A + L L
Sbjct: 168 ELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFL 213
>gi|126698855|ref|YP_001087752.1| GTPase, MG442 type [Clostridium difficile 630]
gi|115250292|emb|CAJ68114.1| putative GTPase, MG442 type [Clostridium difficile 630]
Length = 289
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 120/242 (49%), Gaps = 23/242 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM + + + L+D+++E+ DARIPFSS + D+L P R++VLNK
Sbjct: 9 WYPGHMKKTKELVKNNLKLIDVVIELLDARIPFSSKNPDIDRLVGDKP-----RVVVLNK 63
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKS--DYDASSD 141
D+A + +WI ++ + N + V++ + + ++ + R S D
Sbjct: 64 SDMADRDKLNQWIEYYKKINIKAIPVDTIKGVGINKIIEECKNVTREKMSSLKDKGRKER 123
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ +M++G+PNVGKS+L N L GR + +PG TK +++ N
Sbjct: 124 AIRIMIVGVPNVGKSSLINKLT--GR---------KSTQTGDKPGVTKGKQWVRLKG--N 170
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
+ +LDTPGIL P+ D EV LA + AI D + + LA + L + K A++
Sbjct: 171 LELLDTPGILWPKFEDQEVALNLAFSRAIKDEILDTETLALRLIEKLMKIEPEKLKARYK 230
Query: 262 IN 263
++
Sbjct: 231 LD 232
>gi|443632726|ref|ZP_21116905.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
gi|443347549|gb|ELS61607.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
Length = 282
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 113/227 (49%), Gaps = 21/227 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ L+DI+ E+ DARIP SS + + + RI++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI--LKNKPRIMLLNKADK 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASSDT 142
A ++W F+++ S +NS N + + + + LQ +R +
Sbjct: 63 ADAAVTQQWKEHFEKEGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRA-- 120
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ +++GIPNVGKS L N L K A +PG T +K+ +
Sbjct: 121 IRALIIGIPNVGKSTLINRL-----------AKKNIAKTGDRPGITTSQQWVKVGKE--L 167
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+LDTPGIL P+ D V +LA+TGAI DS + +++A + L L
Sbjct: 168 ELLDTPGILWPKFQDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLE 214
>gi|326389497|ref|ZP_08211064.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
ethanolicus JW 200]
gi|325994502|gb|EGD52927.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
ethanolicus JW 200]
Length = 277
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 113/223 (50%), Gaps = 17/223 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA + + I + LVD++ E+ DARIP SS + + + +RI++LNK DL
Sbjct: 4 WYPGHMAKSKKEIVSNLKLVDVVYEIVDARIPKSSRNPDIDDI--VKNKKRIILLNKADL 61
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN-LRKSDYDASSDTVTV 145
A WI +F ++ + VNS +KE + Q ++ L K +
Sbjct: 62 ADDVITDLWIEYFKEKGIEAVKVNSITGFGLKEINEATQRVCQDILDKKKQKGMIPRLRG 121
Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVL 205
M++G+PNVGKS N L IG + A +PG T+ ++ +K P +L
Sbjct: 122 MIVGVPNVGKSTFINKL--IGS---------KRAKTGDKPGVTRALHWIK---TPYFDLL 167
Query: 206 DTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
DTPGIL P+ D +V LA+TGAI D + +E+A + IL
Sbjct: 168 DTPGILWPKFDDKKVGIMLAITGAIKDEILDIEEIALNLVAIL 210
>gi|255100275|ref|ZP_05329252.1| putative GTPase [Clostridium difficile QCD-63q42]
gi|255306215|ref|ZP_05350387.1| putative GTPase [Clostridium difficile ATCC 43255]
gi|423090845|ref|ZP_17079131.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
70-100-2010]
gi|357555960|gb|EHJ37582.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
70-100-2010]
Length = 298
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 120/242 (49%), Gaps = 23/242 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM + + + L+D+++E+ DARIPFSS + D+L P R++VLNK
Sbjct: 18 WYPGHMKKTKELVKNNLKLIDVVIELLDARIPFSSKNPDIDRLVGDKP-----RVVVLNK 72
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKS--DYDASSD 141
D+A + +WI ++ + N + V++ + + ++ + R S D
Sbjct: 73 SDMADRDKLNQWIEYYKKINIKAIPVDTIKGVGINKIIEECKNVTREKMSSLKDKGRKER 132
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ +M++G+PNVGKS+L N L GR + +PG TK +++ N
Sbjct: 133 AIRIMIVGVPNVGKSSLINKLT--GR---------KSTQTGDKPGVTKGKQWVRLKG--N 179
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
+ +LDTPGIL P+ D EV LA + AI D + + LA + L + K A++
Sbjct: 180 LELLDTPGILWPKFEDQEVALNLAFSRAIKDEILDTETLALRLIEKLMKIEPEKLKARYK 239
Query: 262 IN 263
++
Sbjct: 240 LD 241
>gi|187934506|ref|YP_001885449.1| ribosomal biogenesis GTPase [Clostridium botulinum B str. Eklund
17B]
gi|187722659|gb|ACD23880.1| GTP-binding protein [Clostridium botulinum B str. Eklund 17B]
Length = 285
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/271 (32%), Positives = 132/271 (48%), Gaps = 37/271 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HM R I + + LVD ++E+RDARIP SS + D L P RI++LNK
Sbjct: 5 WFPGHMKKTQREIKENLKLVDAVIEIRDARIPRSSANPDIDSLLQGKP-----RIILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
DL KEWI + + VN D LK ++ + +L K +D
Sbjct: 60 SDLTEGKVTKEWIKHLTKDDVKVLEVNCLKGDG----LKAIKPMLLSLLKEKHDRLRAKG 115
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ T VM++GIPNVGKS N ++ R + A+ G +PG TK +K
Sbjct: 116 MVNITTRVMVVGIPNVGKSTFIN---KMARNSIAKTG--------DKPGVTKSKQWIK-- 162
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYK 255
+ I +LDTPG+L P D E LA TGAI D + +EL+ + L + D K
Sbjct: 163 TSIGIELLDTPGVLWPRFEDEETALNLAFTGAIKDEIMDIEELSYKLVERLQSFYKDNLK 222
Query: 256 KWAKFSINQINK-PL-TLHHKADQSSGSESG 284
+ ++ I+++++ PL TL+ A + SG
Sbjct: 223 E--RYKIDEVSEDPLETLNAIAKKRGTLVSG 251
>gi|169335924|ref|ZP_02863117.1| hypothetical protein ANASTE_02359 [Anaerofustis stercorihominis DSM
17244]
gi|169258662|gb|EDS72628.1| ribosome biogenesis GTP-binding protein YlqF [Anaerofustis
stercorihominis DSM 17244]
Length = 275
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 127/260 (48%), Gaps = 32/260 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA ATR I + + VD+I+++ DAR SE F+++ N + I V NK
Sbjct: 5 WYPGHMAKATRLIKEDLKNVDVIIKLLDARAVIRSENKDFNKIINQK-----KSIKVFNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTV 143
DLA + EWI +F N F V++ NK + + + +L N R ++ V
Sbjct: 60 TDLADDNKTAEWIKYFKDNNEDVFFVDALNKKGLNDVVNYLNDIKVNFR------ANREV 113
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPNVGKS N+ I R + A G T+S Q I Y
Sbjct: 114 RAMVVGIPNVGKSMFINA---ITRKSNARTGNKPGVTLSKQW----------IKVKGEFY 160
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKK--WAKFS 261
+LDTPG+LPP+ ++E LA G++ ++ + +ELA + L D+Y ++
Sbjct: 161 LLDTPGVLPPKFDNIEDGVCLASIGSVKETILDREELALKLIEFL--IDKYPNDLINRYK 218
Query: 262 INQINK-PLTLHHKADQSSG 280
++ ++K PL ++ + G
Sbjct: 219 LDSVDKLPLEVYEDIGRKRG 238
>gi|423082353|ref|ZP_17070945.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
002-P50-2011]
gi|423087745|ref|ZP_17076131.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
050-P50-2011]
gi|357544059|gb|EHJ26065.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
050-P50-2011]
gi|357548679|gb|EHJ30539.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
002-P50-2011]
Length = 298
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 120/242 (49%), Gaps = 23/242 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM + + + L+D+++E+ DARIPFSS + D+L P R++VLNK
Sbjct: 18 WYPGHMKKTKELVKNNLKLIDVVIELLDARIPFSSKNPDIDRLVGDKP-----RVVVLNK 72
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKS--DYDASSD 141
D+A + +WI ++ + N + V++ + + ++ + R S D
Sbjct: 73 SDMADRDKLNQWIEYYKKINIKAIPVDTIKGVGINKIIEECKNVTREKMSSLKDKGRKER 132
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ +M++G+PNVGKS+L N L GR + +PG TK +++ N
Sbjct: 133 AIRIMIVGVPNVGKSSLINKLT--GR---------KSTQTGDKPGVTKGKQWVRLKG--N 179
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
+ +LDTPGIL P+ D EV LA + AI D + + LA + L + K A++
Sbjct: 180 LELLDTPGILWPKFEDQEVALNLAFSRAIKDEILDTETLALRLIEKLMKIEPEKLKARYK 239
Query: 262 IN 263
++
Sbjct: 240 LD 241
>gi|392309932|ref|ZP_10272466.1| GTPase YlqF [Pseudoalteromonas citrea NCIMB 1889]
Length = 314
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 108/224 (48%), Gaps = 33/224 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A I + MP +D+I+EV DARIP+SSE LR P I +LNK
Sbjct: 5 WFPGHMNKARNEIKEIMPQMDVIIEVLDARIPYSSENPMVSALREDKPV-----IKILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNK----DNVKEFLKFLQAHVRNLRKSDYDAS 139
DLA P W+ + +Q++ H+K + E K L H + K
Sbjct: 60 ADLADPVMTDRWMKYLEQESGVKAVAFGHDKAAEVHKINELCKKLAPHKVGIDKQ----- 114
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS L N+L GRI A +P TK +K+
Sbjct: 115 ---LKAMIMGIPNVGKSTLINTLA--GRIV---------AKTGNEPAVTKAQQRIKLED- 159
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
I + DTPG+L P++ + +LA TGAI D+ + +E+A Y
Sbjct: 160 -GIMLYDTPGMLWPKVENENSGYRLAATGAIRDTAIDYEEVASY 202
>gi|322516897|ref|ZP_08069795.1| ribosome biogenesis GTP-binding protein YlqF, partial
[Streptococcus vestibularis ATCC 49124]
gi|322124553|gb|EFX96032.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
vestibularis ATCC 49124]
Length = 277
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 114/219 (52%), Gaps = 21/219 (9%)
Query: 31 HMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT 90
HM+ A R + + + VD + + DAR+P SS+ L ++L+LNK DLA
Sbjct: 3 HMSKARRQVQENLKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLLILNKADLADSN 60
Query: 91 QFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDTVTVM 146
+ KEW ++F+ Q + +NS + VK + K L A ++ LR+ +T+ M
Sbjct: 61 RTKEWRSYFETQGIKTLAINSKEQSTVKLVTDAAKSLMADKIQRLRERGI--QKETLRTM 118
Query: 147 LLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLD 206
++GIPN GKS L N L GK + A V +PG TK LK S+ ++ +LD
Sbjct: 119 IIGIPNAGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKDLEILD 165
Query: 207 TPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
TPGIL P+ D V KLALTGAI D + E+ + L
Sbjct: 166 TPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGL 204
>gi|308068633|ref|YP_003870238.1| GTPase [Paenibacillus polymyxa E681]
gi|305857912|gb|ADM69700.1| Predicted GTPase [Paenibacillus polymyxa E681]
Length = 299
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 116/234 (49%), Gaps = 38/234 (16%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A R I ++ L+D+++E+ DAR+P SS D + P R+++LNK
Sbjct: 18 WFPGHMTRARRQIEAKLKLIDLVIELIDARLPLSSRNPMIDDILQGKP-----RMIILNK 72
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEF-----LKFLQAHVRNLRKSDYDA 138
DLA P ++WI +F +Q + V++ +KE L + R +RK
Sbjct: 73 ADLADPVVSQQWIAYFKEQGHVALPVDATTGTGLKEIPIQAKLLLKEKIDRQIRKG---M 129
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
+ + +++GIPNVGKS L N + GR AA +PG TK +KI
Sbjct: 130 NPRPMRGLIVGIPNVGKSTLINRMA--GRNIAA---------TGDRPGVTKAQQWIKIGE 178
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGD--------SFVGGKELAQYF 244
I +LDTPGIL P+ D V +LA+TGAI + +F K L QY+
Sbjct: 179 ---IELLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNVEDIAFFATKYLVQYY 229
>gi|292670871|ref|ZP_06604297.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas noxia
ATCC 43541]
gi|292647492|gb|EFF65464.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas noxia
ATCC 43541]
Length = 299
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 108/210 (51%), Gaps = 17/210 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A R + + + LVD+++E+ DARIP SS LR + R++VLNK DL
Sbjct: 14 WYPGHMRKAERLVKENLKLVDVVVELLDARIPMSSANPVLR--EIVNGKPRLIVLNKADL 71
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDASSDTVT 144
A T + W+ +F + + V++ VKE ++ + A + + + A +
Sbjct: 72 ADETATRAWVKYFAAEGLTAVPVDAVKGRGVKELVQAIAKCAKPKTDKLVHHGAKARAAR 131
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M+LGIPNVGKS+L N R++ K K V +PG T+ +++ + + +
Sbjct: 132 CMILGIPNVGKSSLIN------RLSGGSKTK-----VENRPGVTRAKQWIRLGAQ--LEL 178
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSF 234
LD PGIL P+ D LA TGAI D+
Sbjct: 179 LDMPGILWPKFEDQHAALHLAFTGAINDNV 208
>gi|296133540|ref|YP_003640787.1| ribosome biogenesis GTP-binding protein YlqF [Thermincola potens
JR]
gi|296032118|gb|ADG82886.1| ribosome biogenesis GTP-binding protein YlqF [Thermincola potens
JR]
Length = 286
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 122/248 (49%), Gaps = 18/248 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM A + + + + +VDI++E+ DARIP SS L R++ LNK DL
Sbjct: 9 WFPGHMVKAKKMVRENLKIVDIVIELVDARIPSSSRNPDL--QEILQGKPRVVALNKADL 66
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRK--SDYDASSDTVT 144
A + W F + C + +NS V++ + + + + + +
Sbjct: 67 ADQNLTERWTQVFTRDGCNAVAINSTTGQGVEKLVALTKKAGEPVMQKLAAKGRKPRPIR 126
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
VM+LGIPNVGKS+L N L A KG R +PG T+ +++ ++ +
Sbjct: 127 VMILGIPNVGKSSLINKL--------AGKGATRTGD---RPGVTRGKQWIRVGR--DMEL 173
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
LDTPGIL P+ D EV KLA+TGAI + + +++ L L K A++ ++
Sbjct: 174 LDTPGILWPKFDDPEVGFKLAVTGAIKEEVINVEQVVLKLLKYLKDMHPEKLKARYKLDS 233
Query: 265 IN-KPLTL 271
++ KP+ +
Sbjct: 234 LSEKPVEI 241
>gi|386313544|ref|YP_006009709.1| ribosome biogenesis GTP-binding protein YlqF [Shewanella
putrefaciens 200]
gi|319426169|gb|ADV54243.1| ribosome biogenesis GTP-binding protein YlqF [Shewanella
putrefaciens 200]
Length = 313
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 116/227 (51%), Gaps = 31/227 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + I + MP VD+++EV DARIP+SSE QLR P I +LNK
Sbjct: 5 WYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVAQLRGDKPC-----IKLLNK 59
Query: 84 MDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P +WI + + +Q + + + VK+ + V + K++ D
Sbjct: 60 SDLADPEITAQWIEYLEREQGVKATAITTLQAAMVKKIPDLCRKLVPSRDKTEKD----- 114
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS + N+L GR+ A +P TK +I I
Sbjct: 115 IRTMIMGIPNVGKSTIINTLA--GRVI---------AKTGNEPAVTKT--QQRINLRNGI 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKEL----AQYFL 245
+ DTPGIL P++ + +LA+TGAI D+ + +++ A+YFL
Sbjct: 162 VLSDTPGILWPKVDNEASSYRLAVTGAIKDTAMEYEDVALFAAKYFL 208
>gi|73662832|ref|YP_301613.1| ribosomal biogenesis GTPase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72495347|dbj|BAE18668.1| putative GTPase [Staphylococcus saprophyticus subsp. saprophyticus
ATCC 15305]
Length = 286
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 120/231 (51%), Gaps = 23/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D++ P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVIQQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLK--FLQAHVRNLRKSDYDASSD 141
D+A+ + ++W ++F ++ +++ + +K+ + + ++ +
Sbjct: 60 KDMANLKELEKWESYFKEKGFYPVAIDAKHGKGLKQVEQTAIKATKEKFEKEKQKGLTPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS L N L + A+ G PG TK +K+ +
Sbjct: 120 AIRAMIVGIPNVGKSTLINKL---ANKSIAKTGN--------TPGVTKQQQWIKVGQ--S 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSD 252
+ +LDTPGIL P+ D V KL++TGAI DS V E+A Y L + D
Sbjct: 167 LQLLDTPGILWPKFEDQLVGKKLSVTGAIKDSIVHLDEVAIYALDFMKAHD 217
>gi|414074437|ref|YP_006999654.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. cremoris
UC509.9]
gi|413974357|gb|AFW91821.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 282
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 115/234 (49%), Gaps = 25/234 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM+ A R + + + VD ++E+ DAR+P SS Q+ P RI+ LNK
Sbjct: 5 WFPGHMSKARRQVQENLKYVDFVIELVDARLPMSSRNPMLGQIIGDKP-----RIIALNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD--ASSD 141
DLA ++ EWI +FD Q + +NS + K + + + D + +
Sbjct: 60 ADLADSSKVAEWIEYFDGQGFVTLAINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHT 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
T+ M++GIPN GKS L N L GK + A +PG TK I ++
Sbjct: 120 TLRTMIIGIPNAGKSTLMNRL----------AGK-KVAVTGNRPGVTKG--QQWIRTNKE 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYK 255
+ +LDTPGIL P+ D V KLALTGAI D + E+ + G+ +F Y+
Sbjct: 167 LELLDTPGILWPKFEDQLVGLKLALTGAIKDDLLPMDEVTIF--GLNHFLKNYR 218
>gi|385838407|ref|YP_005876037.1| 50S ribosomal subunit maturation GTPase RbgA [Lactococcus lactis
subsp. cremoris A76]
gi|358749635|gb|AEU40614.1| 50S ribosomal subunit maturation GTPase RbgA [Lactococcus lactis
subsp. cremoris A76]
Length = 282
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 115/234 (49%), Gaps = 25/234 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM+ A R + + + VD ++E+ DAR+P SS Q+ P RI+ LNK
Sbjct: 5 WFPGHMSKARRQVQENLKYVDFVIELVDARLPMSSRNPMLGQIIGDKP-----RIIALNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD--ASSD 141
DLA ++ EWI +FD Q + +NS + K + + + D + +
Sbjct: 60 ADLADSSKVAEWIEYFDGQGFVTLAINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHT 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
T+ M++GIPN GKS L N L GK + A +PG TK I ++
Sbjct: 120 TLRTMIIGIPNAGKSTLMNRL----------AGK-KVAVTGNRPGVTKG--QQWIRTNKE 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYK 255
+ +LDTPGIL P+ D V KLALTGAI D + E+ + G+ +F Y+
Sbjct: 167 LELLDTPGILWPKFEDQLVGLKLALTGAIKDDLLPMDEVTIF--GLNHFLKNYR 218
>gi|343515074|ref|ZP_08752134.1| ribosomal biogenesis GTPase [Vibrio sp. N418]
gi|342798885|gb|EGU34478.1| ribosomal biogenesis GTPase [Vibrio sp. N418]
Length = 311
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 120/246 (48%), Gaps = 33/246 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + IA+ +P +D+I+EV DARIPFSSE +LR P + VLNK
Sbjct: 5 WFPGHMHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMISELRGDKPV-----VKVLNK 59
Query: 84 MDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKF---LQAHVRNLRKSDYDAS 139
DLA P + WI + +QN + + + V++ L+ L H + K+
Sbjct: 60 RDLADPEMTQLWIEHLEKEQNVKAMAITTSQPQEVQKILELCRKLAPHREEIGKN----- 114
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS + NSL GR A QP T+ +I
Sbjct: 115 ---IRTMIMGIPNVGKSTIINSLA--GRTI---------AITGNQPAVTR--RQQRINLQ 158
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAK 259
+ + DTPGIL P++ + +LA TGA+ D+ + E+A Y + L + K +
Sbjct: 159 NGVVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAQAYPEKLKER 218
Query: 260 FSINQI 265
+ I ++
Sbjct: 219 YQIEEL 224
>gi|294141330|ref|YP_003557308.1| GTP-binding protein [Shewanella violacea DSS12]
gi|293327799|dbj|BAJ02530.1| GTP-binding protein [Shewanella violacea DSS12]
Length = 312
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 115/227 (50%), Gaps = 31/227 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + I + MP VD+++EV DARIP+SSE LR P I +LNK
Sbjct: 5 WYPGHMHKARKEIEEVMPQVDLVIEVLDARIPYSSENPVVSTLRGDKPC-----IKLLNK 59
Query: 84 MDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + WI + + +Q + + + VK+ + V + K + D
Sbjct: 60 SDLADPEVTQRWIEYLEREQGVKAMAITTLQAAQVKKIPDLCRKFVPSRDKLEKD----- 114
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS + N+L GR+ A +P TK +I I
Sbjct: 115 IRTMIMGIPNVGKSTIINTLA--GRMI---------AKTGNEPAVTK--VQQRINLRNGI 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKEL----AQYFL 245
+ DTPGIL P++ + + +LA+TGAI D+ + +++ A+YFL
Sbjct: 162 VLSDTPGILWPKVDNEKSSYRLAITGAIKDTAMEYEDVAMFAAEYFL 208
>gi|303234815|ref|ZP_07321440.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna
BVS033A4]
gi|302493933|gb|EFL53714.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna
BVS033A4]
Length = 285
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 122/248 (49%), Gaps = 25/248 (10%)
Query: 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLN 82
WY HM A I + M LVDI+L + D+RI SS + + P ++++LN
Sbjct: 7 NWYPGHMKKAIDKIKENMKLVDIVLVLVDSRIVRSSMNPVIEDILKDKP-----QLILLN 61
Query: 83 KMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEF---LKFLQAHVRNLRKSDYDAS 139
KMD+A P + WI +F ++N + ++S N N+ + K + V + RK D +
Sbjct: 62 KMDMADPKITQNWINYFAKKNITALPIDSKNGKNLDKIEPTTKKILEDVLSSRK-DKNIK 120
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
S+ + +M++GIPNVGKS + N L + A PG T+ ++I
Sbjct: 121 SEIIRMMIVGIPNVGKSTIINKLSN-----------RQSAKTGNTPGVTRTNQWIRIKGK 169
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAK 259
+ +LDTPG+L P+ D E+ LA TGAI D + + LA + L D +
Sbjct: 170 --MELLDTPGVLWPKFEDNEIGLNLAFTGAIKDEILDEENLAYKLIEKLMSIDPQILEKR 227
Query: 260 FSINQINK 267
+S++ NK
Sbjct: 228 YSVDTQNK 235
>gi|428318775|ref|YP_007116657.1| Ras superfamily GTP-binding protein YlqF [Oscillatoria
nigro-viridis PCC 7112]
gi|428242455|gb|AFZ08241.1| Ras superfamily GTP-binding protein YlqF [Oscillatoria
nigro-viridis PCC 7112]
Length = 288
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 120/229 (52%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A RA+ +++ VD++LEVRDARIP ++ +HP R+LV+
Sbjct: 5 WYPGHIAKAERALKEQLKRVDVVLEVRDARIPLAT-------YHPQMPSWVGGKARVLVI 57
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ-AHVR-NLRKSDYDAS 139
N++D+ +P + W T+F+ Q ++ N+ + V +Q A V+ N R+ D
Sbjct: 58 NRIDMITPRAREAWETWFETQGETAYFTNAEHGQGVDAVADAVQNAGVQLNKRRFDRGML 117
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
V +++G PNVGKSAL N L +GR R + + G TK + ++I+
Sbjct: 118 PRPVRAVVMGFPNVGKSALINRL--LGR---------RVVDSARRAGVTKSLRWIRISDE 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
I +LD PG++P I++ E KLA+ IG++ + +A + +L
Sbjct: 167 --IELLDAPGVIPTRINNQENALKLAICEDIGEAAYDNQVVAAAMVDLL 213
>gi|325661110|ref|ZP_08149737.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 4_1_37FAA]
gi|325472617|gb|EGC75828.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 4_1_37FAA]
Length = 283
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 111/227 (48%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A R + + + L+D+++E+ DARIP SS + D+L + R+++LNK
Sbjct: 5 WYPGHMTKAKRMMQENIKLIDLVIELVDARIPVSSRNPDIDELGKNKA-----RLILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DLA Q W +F ++ VNS +K +Q + + D +
Sbjct: 60 SDLAEEKQNDAWAEYFKEKGFSVVKVNSKRGGGIKSIQGVIQEACKEKIERDRKRGILNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M++GIPNVGKS N+L G+ A K PG TK +++ + N
Sbjct: 120 PVRAMVVGIPNVGKSTFINALA--GKACAKTGNK---------PGVTKGKQWIRL--NKN 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P+ D V +LA G+I D + +ELA + L
Sbjct: 167 VELLDTPGILWPKFEDQTVGLRLAFIGSIKDEILNTEELAMEMITFL 213
>gi|418637478|ref|ZP_13199798.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
lugdunensis VCU139]
gi|374838986|gb|EHS02518.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
lugdunensis VCU139]
Length = 294
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 115/234 (49%), Gaps = 37/234 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R + +++ VD++ E+ DARIP+SS D + P R+++LNK
Sbjct: 5 WYPGHMAKAKREVTEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKS 134
D+ + + +W +F +Q V++ + N+K KF + + L+
Sbjct: 60 KDMTNLKEMSKWEHYFVEQGFYPVAVDAKHGKNLKGVEAAAIEATKDKFAKEQAKGLKPR 119
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ M++GIPNVGKS L N L R A+ G +PG TK +
Sbjct: 120 -------AIRAMIVGIPNVGKSTLINKL---ARKNIAQTGN--------KPGVTKQQQWI 161
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
K+ + +LDTPGIL P+ D V KL+LTGAI DS V ++A + L L
Sbjct: 162 KVGK--VLQLLDTPGILWPKFEDELVGKKLSLTGAIKDSIVHLDDVAIFGLNFL 213
>gi|395755858|ref|XP_002833652.2| PREDICTED: mitochondrial GTPase 1-like isoform 1 [Pongo abelii]
Length = 210
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 114/216 (52%), Gaps = 25/216 (11%)
Query: 43 MPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFF 99
+ LVD I+EV DARIP S F + P +LVLNKMDLA T+ ++ +
Sbjct: 5 LKLVDCIIEVHDARIPLSGRNPLFQETLGLKP-----HLLVLNKMDLADLTEQQKIMQHL 59
Query: 100 DQQNCPSFGVNSHNKD-NVKEFLKFLQAHV----RNLRKSDYDASSDTVTVMLLGIPNVG 154
+ + + + KD NVK+ + + + R R+ + + +M++G+PNVG
Sbjct: 60 EGEGLKNVIFTNCVKDENVKQIIPMVTELIGRSHRYHRRENLEYC-----IMVIGVPNVG 114
Query: 155 KSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYVLDTPGILPP 213
KS+L NSL R KGK V +PG T+ + S ++++ P +++LDTPG+L P
Sbjct: 115 KSSLINSL----RRQHLRKGK--ATRVGGEPGITRAVMSKIQVSERPLLFLLDTPGVLAP 168
Query: 214 EIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
I VE KLAL G + D VG + +A Y L LN
Sbjct: 169 RIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 204
>gi|195978101|ref|YP_002123345.1| ribosomal biogenesis GTPase [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|195974806|gb|ACG62332.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus equi
subsp. zooepidemicus MGCS10565]
Length = 284
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 118/231 (51%), Gaps = 22/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R + + + VD + + DAR+P SS+ L ++++LNK DL
Sbjct: 6 WFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMLLNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASSDTV 143
A T K+W ++++Q + +N+ + VK E K L A + R + +T+
Sbjct: 64 ADNTHTKKWQQYYEKQGIKTLAINAKEQATVKRVTEAAKELMADKLH-RLRERGIQKETL 122
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPN GKS L N L GK + ATV +PG TK LK S+ +
Sbjct: 123 RTMIIGIPNAGKSTLMNRLA----------GK-KIATVGNKPGVTKGQQWLK--SNKELE 169
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+LDTPGIL P+ D V KLALTGAI D + E+ + LN+ +Y
Sbjct: 170 ILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFG---LNYFKKY 217
>gi|343512416|ref|ZP_08749545.1| ribosomal biogenesis GTPase [Vibrio scophthalmi LMG 19158]
gi|342795394|gb|EGU31124.1| ribosomal biogenesis GTPase [Vibrio scophthalmi LMG 19158]
Length = 314
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 120/246 (48%), Gaps = 33/246 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + IA+ +P +D+I+EV DARIPFSSE +LR P + VLNK
Sbjct: 8 WFPGHMHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMISELRGDKPV-----VKVLNK 62
Query: 84 MDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKF---LQAHVRNLRKSDYDAS 139
DLA P + WI + +QN + + + V++ L+ L H + K+
Sbjct: 63 RDLADPEMTQLWIEHLEKEQNVKAMAITTSQPQEVQKILELCRKLAPHREEIGKN----- 117
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS + NSL GR A QP T+ +I
Sbjct: 118 ---IRTMIMGIPNVGKSTIINSLA--GRTI---------AITGNQPAVTR--RQQRINLQ 161
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAK 259
+ + DTPGIL P++ + +LA TGA+ D+ + E+A Y + L + K +
Sbjct: 162 NGVVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAQAYPEKLKER 221
Query: 260 FSINQI 265
+ I ++
Sbjct: 222 YQIEEL 227
>gi|315658467|ref|ZP_07911339.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
lugdunensis M23590]
gi|315496796|gb|EFU85119.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
lugdunensis M23590]
Length = 295
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 115/234 (49%), Gaps = 37/234 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R + +++ VD++ E+ DARIP+SS D + P R+++LNK
Sbjct: 6 WYPGHMAKAKRKVTEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKP-----RVVILNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKS 134
D+ + + +W +F +Q V++ + N+K KF + + L+
Sbjct: 61 KDMTNLKEMSKWEHYFVEQGFYPVAVDAKHGKNLKGVEAAAIEATKDKFAKEQAKGLKPR 120
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ M++GIPNVGKS L N L R A+ G +PG TK +
Sbjct: 121 -------AIRAMIVGIPNVGKSTLINKL---ARKNIAQTGN--------KPGVTKQQQWI 162
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
K+ + +LDTPGIL P+ D V KL+LTGAI DS V ++A + L L
Sbjct: 163 KVGK--VLQLLDTPGILWPKFEDELVGKKLSLTGAIKDSIVHLDDVAIFGLNFL 214
>gi|319788757|ref|YP_004090072.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus albus 7]
gi|315450624|gb|ADU24186.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus albus 7]
Length = 298
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 121/250 (48%), Gaps = 25/250 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA R +A M LVD ++E+ DARIP+SS E ++ + P R+++LNK
Sbjct: 9 WFPGHMAKTRRIMASNMKLVDAVVEITDARIPYSSRNPEIKKICGNKP-----RMVLLNK 63
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV-RNLRKSDYDA-SSD 141
D A WI ++ QQ P+ + + NV +F L+ + + K D +
Sbjct: 64 ADSADADVTSMWIEYYKQQGVPALATDCRSGRNVNKFYPMLKELLSEQIEKWDTRGMTGR 123
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ +M++GIPNVGKS+ N R+ A + A V +PG T+ +A
Sbjct: 124 PIRMMIVGIPNVGKSSFIN------RLAGA-----KMAKVEDRPGVTRG--KQWVALEDG 170
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKKWAK 259
+LD PG+L P+ D V +LA TGA+ D + + LA L L ++ D
Sbjct: 171 FELLDMPGVLWPKFDDKLVGERLAFTGAVKDVILDTEYLACRLLEYLAEDYPDLLTDRYG 230
Query: 260 FSINQINKPL 269
S+ + +P+
Sbjct: 231 ISLEDLPEPM 240
>gi|116512137|ref|YP_809353.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. cremoris
SK11]
gi|116107791|gb|ABJ72931.1| Ras superfamily GTP-binding protein YlqF [Lactococcus lactis subsp.
cremoris SK11]
Length = 283
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 115/234 (49%), Gaps = 25/234 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM+ A R + + + VD ++E+ DAR+P SS Q+ P RI+ LNK
Sbjct: 6 WFPGHMSKARRQVQENLKYVDFVIELVDARLPMSSRNPMLGQIIGDKP-----RIVALNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD--ASSD 141
DLA ++ EWI +FD Q + +NS + K + + + D + +
Sbjct: 61 ADLADSSKVAEWIEYFDGQGFVTLAINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHT 120
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
T+ M++GIPN GKS L N L GK + A +PG TK I ++
Sbjct: 121 TLRTMIIGIPNAGKSTLMNRL----------AGK-KVAVTGNRPGVTKG--QQWIRTNKE 167
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYK 255
+ +LDTPGIL P+ D V KLALTGAI D + E+ + G+ +F Y+
Sbjct: 168 LELLDTPGILWPKFEDQLVGLKLALTGAIKDDLLPMDEVTIF--GLNHFLKNYR 219
>gi|406837520|ref|ZP_11097114.1| GTPase [Lactobacillus vini DSM 20605]
Length = 287
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 118/227 (51%), Gaps = 30/227 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A R I + + L+DI LE+ DAR+P S+ Q+ ++ +L+L K DL
Sbjct: 6 WYPGHMVKAIRQIKENLRLIDIALELTDARLPESARNPQI--EALLANKPSLLILTKSDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHN------KDNVKEFL--KFLQAHVRNLRKSDYDA 138
A+P + W+ ++ QQ P+ +NS N + +++ L K A + L+K A
Sbjct: 64 ANPRATQAWLNYYQQQQQPAIAINSLNLKPKLLEKKIEQILAVKIKSAQEKGLQKKRLRA 123
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
+ LGIPNVGKS L N H +G+ + A +PG TK LK +
Sbjct: 124 -------LCLGIPNVGKSTLLN--HLVGK---------KAAQTGDRPGVTKAQQWLK--A 163
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
N+ +LDTPG+L P+ + + KLALTGAI D+ V ++A + L
Sbjct: 164 GKNLDLLDTPGVLWPKFENQIIGQKLALTGAIKDTLVAVDDIALFAL 210
>gi|428213287|ref|YP_007086431.1| ribosome biogenesis GTP-binding protein YlqF [Oscillatoria
acuminata PCC 6304]
gi|428001668|gb|AFY82511.1| ribosome biogenesis GTP-binding protein YlqF [Oscillatoria
acuminata PCC 6304]
Length = 287
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 118/234 (50%), Gaps = 27/234 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H++ A + +A+++ LVD++LEVRDARIP S+ HHP S R+L++
Sbjct: 8 WYPGHISKAEKQLAEQLKLVDVVLEVRDARIPLST-------HHPQVPQWVGSKSRVLII 60
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAH--VRNLRKSDYDAS 139
N++D P W +F +Q + N+ + +K K + N R+ D
Sbjct: 61 NRVDTILPPLRDRWHLWFQRQGETPYFTNAQDGTGIKAISKAAKEAGIALNQRRLDRGMR 120
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
V +++G PNVGKSAL N L +GR R + + G TK + ++I+
Sbjct: 121 PRAVRAVVIGFPNVGKSALINRL--VGR---------RVVESARRAGVTKQLRWVRISDE 169
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDE 253
+ +LD PG++P ++ D + KLA+ IG++ + +A F+ ++ +E
Sbjct: 170 --LELLDAPGVIPSKLEDQDAALKLAICDDIGEAAYDNQRVAWAFVDMVKDIEE 221
>gi|387813286|ref|YP_005428768.1| hypothetical protein MARHY0863 [Marinobacter hydrocarbonoclasticus
ATCC 49840]
gi|381338298|emb|CCG94345.1| conserved hypothetical protein, putative GTPase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 307
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 116/220 (52%), Gaps = 25/220 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + I MP +D+I+EV DARIPFSSE LR P I VLNK
Sbjct: 5 WFPGHMHKARKEIKKVMPQMDLIIEVVDARIPFSSENPLVPSLRGDTPL-----IKVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTV 143
DLA P ++W+ + +Q+ +HN+ +E L L+ + +D +
Sbjct: 60 RDLADPVITEQWLAWLEQERGVRAVTLTHNQR--QEALGILK--LAEEMTPGHDRQKSAL 115
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
VM+LGIPNVGKS L N+L GR AA+ G +P T+ ++K+ N+
Sbjct: 116 RVMILGIPNVGKSTLINTLA--GR-PAAKTGN--------EPAVTRAQQAIKLPD--NVL 162
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
+ DTPG L P++ V+ +LA+TGAI + + +++A +
Sbjct: 163 LYDTPGFLWPKLSPVQCGYRLAITGAIRSAVLDFEDVALF 202
>gi|331085162|ref|ZP_08334248.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 9_1_43BFAA]
gi|330407945|gb|EGG87435.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 9_1_43BFAA]
Length = 283
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 111/227 (48%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A R + + + L+D+++E+ DARIP SS + D+L + R+++LNK
Sbjct: 5 WYPGHMTKAKRMMQENIKLIDLVIELVDARIPVSSRNPDIDELGKNKA-----RLILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DLA Q W +F ++ VNS +K +Q + + D +
Sbjct: 60 SDLAEEKQNDAWAEYFKEKGFSVVKVNSKRGGGIKSIQGVIQEACKEKIERDRKRGILNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M++GIPNVGKS N+L G+ A K PG TK +++ + N
Sbjct: 120 PVRAMVVGIPNVGKSTFINALA--GKACAKTGNK---------PGVTKGKQWIRL--NKN 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P+ D V +LA G+I D + +ELA + L
Sbjct: 167 VELLDTPGILWPKFEDQTVGLRLAFIGSIKDEILNTEELAMEMITFL 213
>gi|255281040|ref|ZP_05345595.1| ribosome biogenesis GTP-binding protein YlqF [Bryantella
formatexigens DSM 14469]
gi|255268488|gb|EET61693.1| ribosome biogenesis GTP-binding protein YlqF [Marvinbryantia
formatexigens DSM 14469]
Length = 294
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 112/227 (49%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A R + + + L+D+I+E+ DARIP SS + D+L + R+L+LNK
Sbjct: 5 WYPGHMTKAKRMMQEDIKLIDVIIELVDARIPQSSRNPDIDELGKNRA-----RVLLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DLA + WI F + + ++S K+ + + LQ R + D +
Sbjct: 60 ADLADAAGCEAWIEHFRAKGYYAVALDSRRKNGMNALGRVLQEACREKIERDRKRGILNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M+ GIPNVGKS N+ GR A +PG TK +++ + N
Sbjct: 120 PVRAMVAGIPNVGKSTFINTYA--GRACA---------KTGNRPGVTKGKQWIRL--NKN 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P+ D V +LAL G+I D + +ELA + L
Sbjct: 167 VELLDTPGILWPKFEDQTVGLRLALIGSIRDEILNTEELALELITFL 213
>gi|443648941|ref|ZP_21130123.1| ribosome biogenesis GTP-binding protein YlqF [Microcystis
aeruginosa DIANCHI905]
gi|159026387|emb|CAO90485.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443335054|gb|ELS49537.1| ribosome biogenesis GTP-binding protein YlqF [Microcystis
aeruginosa DIANCHI905]
Length = 279
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A R + + + LVD++LEVRDARIP +S HHP + R+L+L
Sbjct: 6 WYPGHIAKAERKLKEHLKLVDVVLEVRDARIPLAS-------HHPQVDDWIGNKPRLLIL 58
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDAS 139
N++D+ + ++W+T+F Q + N+ + VK +K + N ++
Sbjct: 59 NRLDMIPESAQQQWVTWFKSQGETVYFTNAKQGERVKAIIKAAEKIGDEINQKRQLRGML 118
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
V +++G PNVGKSAL N L +GR A + + G T+ + ++I+
Sbjct: 119 PRPVRAVVIGFPNVGKSALINRL--LGRKVVAS---------ARRAGVTRQLQWVRISD- 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LD PG++P + + + KLA+ IGD+ + +A F+ +L
Sbjct: 167 -TLELLDAPGVIPSRLENQKDAVKLAICEDIGDAGYDNQRIAAAFVDLL 214
>gi|169824228|ref|YP_001691839.1| putative GTPase [Finegoldia magna ATCC 29328]
gi|167831033|dbj|BAG07949.1| putative GTPase [Finegoldia magna ATCC 29328]
Length = 285
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 122/248 (49%), Gaps = 25/248 (10%)
Query: 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLN 82
WY HM A I + M LVDI+L + D+RI SS + + P ++++LN
Sbjct: 7 NWYPGHMKKAIDKIKENMKLVDIVLVLVDSRIVKSSMNPVIEDILKDKP-----QLILLN 61
Query: 83 KMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEF---LKFLQAHVRNLRKSDYDAS 139
KMD+A P + WI +F ++N + ++S N N+ + K + V + RK D +
Sbjct: 62 KMDMADPKITQNWINYFAKKNITALPIDSKNGKNLDKIEPTTKKILEDVLSSRK-DKNIK 120
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
S+ + +M++GIPNVGKS + N L + A PG T+ ++I
Sbjct: 121 SEIIRMMIVGIPNVGKSTIINKLSN-----------RQSAKTGNTPGVTRTNQWIRIKGK 169
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAK 259
+ +LDTPG+L P+ D E+ LA TGAI D + + LA + L D +
Sbjct: 170 --MELLDTPGVLWPKFEDNEIGLNLAFTGAIKDEILDEENLAYKLIEKLMSIDPQILEKR 227
Query: 260 FSINQINK 267
+S++ NK
Sbjct: 228 YSVDTQNK 235
>gi|126174081|ref|YP_001050230.1| ribosomal biogenesis GTPase [Shewanella baltica OS155]
gi|153000407|ref|YP_001366088.1| ribosomal biogenesis GTPase [Shewanella baltica OS185]
gi|160875004|ref|YP_001554320.1| ribosomal biogenesis GTPase [Shewanella baltica OS195]
gi|373949221|ref|ZP_09609182.1| ribosome biogenesis GTP-binding protein YlqF [Shewanella baltica
OS183]
gi|378708247|ref|YP_005273141.1| ribosome biogenesis GTP-binding protein YlqF [Shewanella baltica
OS678]
gi|386324939|ref|YP_006021056.1| ribosome biogenesis GTP-binding protein YlqF [Shewanella baltica
BA175]
gi|386340841|ref|YP_006037207.1| ribosome biogenesis GTP-binding protein YlqF [Shewanella baltica
OS117]
gi|418024893|ref|ZP_12663874.1| ribosome biogenesis GTP-binding protein YlqF [Shewanella baltica
OS625]
gi|125997286|gb|ABN61361.1| GTP-binding protein, HSR1-related [Shewanella baltica OS155]
gi|151365025|gb|ABS08025.1| GTP-binding protein HSR1-related [Shewanella baltica OS185]
gi|160860526|gb|ABX49060.1| GTP-binding protein HSR1-related [Shewanella baltica OS195]
gi|315267236|gb|ADT94089.1| ribosome biogenesis GTP-binding protein YlqF [Shewanella baltica
OS678]
gi|333819084|gb|AEG11750.1| ribosome biogenesis GTP-binding protein YlqF [Shewanella baltica
BA175]
gi|334863242|gb|AEH13713.1| ribosome biogenesis GTP-binding protein YlqF [Shewanella baltica
OS117]
gi|353535748|gb|EHC05309.1| ribosome biogenesis GTP-binding protein YlqF [Shewanella baltica
OS625]
gi|373885821|gb|EHQ14713.1| ribosome biogenesis GTP-binding protein YlqF [Shewanella baltica
OS183]
Length = 313
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 116/227 (51%), Gaps = 31/227 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + I + MP VD+++EV DARIP+SSE QLR P I +LNK
Sbjct: 5 WYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVAQLRGDKPC-----IKLLNK 59
Query: 84 MDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P +WI + + +Q + + + VK+ + V + K++ D
Sbjct: 60 SDLADPEITAQWIEYLEREQGVKATAITTLQAAMVKKIPDICRKLVPSRDKTEKD----- 114
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS + N+L GR+ A +P TK +I I
Sbjct: 115 IRTMIMGIPNVGKSTIINTLA--GRVI---------AKTGNEPAVTKT--QQRINLRNGI 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKEL----AQYFL 245
+ DTPGIL P++ + +LA+TGAI D+ + +++ A+YFL
Sbjct: 162 VLSDTPGILWPKVDNEASSYRLAVTGAIKDTAMEYEDVALFAAKYFL 208
>gi|425446401|ref|ZP_18826405.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 9443]
gi|389733392|emb|CCI02838.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 9443]
Length = 279
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A R + + + LVD++LEVRDARIP +S HHP + R+L+L
Sbjct: 6 WYPGHIAKAERKLKEHLKLVDVVLEVRDARIPLAS-------HHPQVDDWIGNKPRLLIL 58
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDAS 139
N++D+ + ++W+T+F Q + N+ + VK +K + N ++
Sbjct: 59 NRLDMIPESAQQQWVTWFKSQGETVYFTNAKQGERVKAIIKAAEKIGDEINQKRQIRGML 118
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
V +++G PNVGKSAL N L +GR A + + G T+ + ++I+
Sbjct: 119 PRPVRAVVIGFPNVGKSALINRL--LGRKVVAS---------ARRAGVTRQLQWVRISD- 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LD PG++P + + + KLA+ IGD+ + +A F+ +L
Sbjct: 167 -TLELLDAPGVIPSRLENQKDAVKLAICEDIGDAGYDNQRIAAAFVDLL 214
>gi|217973604|ref|YP_002358355.1| ribosomal biogenesis GTPase [Shewanella baltica OS223]
gi|217498739|gb|ACK46932.1| GTP1/OBG protein [Shewanella baltica OS223]
Length = 313
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 116/227 (51%), Gaps = 31/227 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + I + MP VD+++EV DARIP+SSE QLR P I +LNK
Sbjct: 5 WYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVAQLRGDKPC-----IKLLNK 59
Query: 84 MDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P +WI + + +Q + + + VK+ + V + K++ D
Sbjct: 60 SDLADPEITAQWIEYLEREQGVKATAITTLQAAMVKKIPDICRKLVPSRDKTEKD----- 114
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS + N+L GR+ A +P TK +I I
Sbjct: 115 IRTMIMGIPNVGKSTIINTLA--GRVI---------AKTGNEPAVTKT--QQRINLRNGI 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKEL----AQYFL 245
+ DTPGIL P++ + +LA+TGAI D+ + +++ A+YFL
Sbjct: 162 VLSDTPGILWPKVDNEASSYRLAVTGAIKDTAMEYEDVALFAAKYFL 208
>gi|425473004|ref|ZP_18851750.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 9701]
gi|389880715|emb|CCI38591.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 9701]
Length = 279
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A R + + + LVD++LEVRDARIP +S HHP + R+L+L
Sbjct: 6 WYPGHIAKAERKLKEHLKLVDVVLEVRDARIPLAS-------HHPQLDDWIGNKPRLLIL 58
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDAS 139
N++D+ + ++W+T+F Q + N+ + VK +K + N ++
Sbjct: 59 NRLDMIPESAQQQWVTWFKSQGETVYFTNAKQGERVKAIIKAAEKIGDEINQKRQIRGML 118
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
V +++G PNVGKSAL N L +GR A + + G T+ + ++I+
Sbjct: 119 PRPVRAVVIGFPNVGKSALINRL--LGRKVVAS---------ARRAGVTRQLQWVRISD- 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LD PG++P + + + KLA+ IGD+ + +A F+ +L
Sbjct: 167 -TLELLDAPGVIPSRLENQKDAVKLAICEDIGDAGYDNQRIAAAFVDLL 214
>gi|425457270|ref|ZP_18836976.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 9807]
gi|389801423|emb|CCI19422.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 9807]
Length = 279
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A R + + + LVD++LEVRDARIP +S HHP + R+L+L
Sbjct: 6 WYPGHIAKAERKLKEHLKLVDVVLEVRDARIPLAS-------HHPQVDDWIGNKPRLLIL 58
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDAS 139
N++D+ + ++W+T+F Q + N+ + VK +K + N ++
Sbjct: 59 NRLDMIPESAQQQWVTWFKSQGKTVYFTNAKQGERVKAIIKAAEKIGDEINQKRQLRGML 118
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
V +++G PNVGKSAL N L +GR A + + G T+ + ++I+
Sbjct: 119 PRPVRAVVIGFPNVGKSALINRL--LGRKVVAS---------ARRAGVTRQLQWVRISD- 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LD PG++P + + + KLA+ IGD+ + +A F+ +L
Sbjct: 167 -TLELLDAPGVIPSRLENQKDAVKLAICEDIGDAGYDNQRIAAAFVDLL 214
>gi|254974803|ref|ZP_05271275.1| putative GTPase [Clostridium difficile QCD-66c26]
gi|255092191|ref|ZP_05321669.1| putative GTPase [Clostridium difficile CIP 107932]
gi|255313930|ref|ZP_05355513.1| putative GTPase [Clostridium difficile QCD-76w55]
gi|255516609|ref|ZP_05384285.1| putative GTPase [Clostridium difficile QCD-97b34]
gi|255649709|ref|ZP_05396611.1| putative GTPase [Clostridium difficile QCD-37x79]
gi|306519822|ref|ZP_07406169.1| putative GTPase [Clostridium difficile QCD-32g58]
gi|384360454|ref|YP_006198306.1| GTPase [Clostridium difficile BI1]
Length = 298
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 23/242 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM + + + L+D+++E+ DARIPFSS + D+L P R++VLNK
Sbjct: 18 WYPGHMKKTKELVKNNLKLIDVVIELLDARIPFSSKNPDIDRLVGDKP-----RVVVLNK 72
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKS--DYDASSD 141
D+A + +WI ++ + N + V++ + ++ + R S D
Sbjct: 73 SDMADRDKLNQWIEYYKKINIKAIPVDTIKGVGINNIIEECKNVTREKMSSLKDKGRKER 132
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ +M++G+PNVGKS+L N L GR + +PG TK +++ N
Sbjct: 133 AIRIMIVGVPNVGKSSLINKLT--GR---------KSTQTGDKPGVTKGKQWVRLKG--N 179
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
+ +LDTPGIL P+ D EV LA + AI D + + LA + L + K A++
Sbjct: 180 LELLDTPGILWPKFEDQEVALNLAFSRAIKDEILDTETLALRLIEKLMKIEPEKLKARYK 239
Query: 262 IN 263
++
Sbjct: 240 LD 241
>gi|127512518|ref|YP_001093715.1| ribosomal biogenesis GTPase [Shewanella loihica PV-4]
gi|126637813|gb|ABO23456.1| GTP-binding protein, HSR1-related [Shewanella loihica PV-4]
Length = 313
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 118/227 (51%), Gaps = 31/227 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + IA+ MP VD+++EV DARIP+SSE LR + P I +LNK
Sbjct: 5 WFPGHMHKARKEIAEVMPQVDLVIEVLDARIPYSSENPMVTSLRGNRPC-----IKLLNK 59
Query: 84 MDLASPTQFKEWITFFDQ-QNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + WI + +Q Q + + + V++ + + V + K + D
Sbjct: 60 SDLADPEITQRWIDYLEQEQGVKAMAITTLQAAQVRKVPELCRKLVPSRDKIEKD----- 114
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS + N+L GR+ A +P TK + + + I
Sbjct: 115 IRTMIMGIPNVGKSTIINTLA--GRVI---------AKTGNEPAVTKTQQRINLKN--GI 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKEL----AQYFL 245
+ DTPGIL P++ + +LA+TGAI D+ + +++ A+YFL
Sbjct: 162 VLSDTPGILWPKVDNEASGYRLAVTGAIKDTAMEYEDVAMFAAEYFL 208
>gi|157962329|ref|YP_001502363.1| ribosomal biogenesis GTPase [Shewanella pealeana ATCC 700345]
gi|157847329|gb|ABV87828.1| GTP-binding protein HSR1-related [Shewanella pealeana ATCC 700345]
Length = 312
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 115/227 (50%), Gaps = 31/227 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + I + MP VD+++EV DARIP+SSE LR P I +LNK
Sbjct: 5 WYPGHMHKARKEIEEVMPQVDLVIEVLDARIPYSSENPMVQTLRGDKPC-----IKLLNK 59
Query: 84 MDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + WI + + +Q + + + VK+ + V + K + D
Sbjct: 60 SDLADPETTQRWIEYLEREQGVKAMAITTLQAGQVKKIPDLCRKFVPSRDKIEKD----- 114
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS + N+L GR+ A +P TK +I I
Sbjct: 115 IRTMIMGIPNVGKSTIINTLA--GRMI---------AKTGNEPAVTKT--QQRINLRNGI 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKEL----AQYFL 245
+ DTPGIL P++ + + +LA+TGAI D+ + +++ A+YFL
Sbjct: 162 VLSDTPGILWPKVDNEKSSYRLAVTGAIKDTAMEYEDVAMFAAEYFL 208
>gi|256847170|ref|ZP_05552616.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
coleohominis 101-4-CHN]
gi|256715834|gb|EEU30809.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
coleohominis 101-4-CHN]
Length = 290
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 112/225 (49%), Gaps = 17/225 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R I ++M LVDI+ E+ DARIP+SS+ ++ R+L+L K DL
Sbjct: 6 WFPGHMAKALRQIREQMSLVDIVFELVDARIPYSSQNPEV--ARAAGDKPRLLILTKTDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDY--DASSDTVT 144
A P +EW+ FF + P ++S ++ K + Q+ + + ++ +
Sbjct: 64 ADPQVTQEWLNFFAHHDQPVLALDSRGRNVAKVVTQKAQSILVDKLAAEQAKGMKKRAIR 123
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M +G+PNVGKS L N H + + AA + PG T L+ S + +
Sbjct: 124 AMCVGVPNVGKSTLLN--HLVKKNVAATGNR---------PGVTTGQQWLR--SSAQLEL 170
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
LDTPG+L P+ + LALTGAI DS ++A + L L
Sbjct: 171 LDTPGVLWPKFATERQGTLLALTGAIKDSLFAKDDVALFALHYLR 215
>gi|425449737|ref|ZP_18829572.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 7941]
gi|389769738|emb|CCI05506.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 7941]
Length = 279
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A R + + + LVD++LEVRDARIP +S HHP + R+L+L
Sbjct: 6 WYPGHIAKAERKLKEHLKLVDVVLEVRDARIPLAS-------HHPQVDDWIGNKPRLLIL 58
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDAS 139
N++D+ + ++W+T+F Q + N+ + VK +K + N ++
Sbjct: 59 NRLDMIPESAQQQWVTWFKSQGETVYFTNAKQGERVKAIIKAAEKIGDEINQKRQLRGML 118
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
V +++G PNVGKSAL N L +GR A + + G T+ + ++I+
Sbjct: 119 PRPVRAVVIGFPNVGKSALINRL--LGRKVVAS---------ARRAGVTRQLQWVRISD- 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LD PG++P + + + KLA+ IGD+ + +A F+ +L
Sbjct: 167 -TLELLDAPGVIPSRLENQKDAVKLAICEDIGDAGYDNQRIAAAFVDLL 214
>gi|381204932|ref|ZP_09912003.1| GTPase YlqF [SAR324 cluster bacterium JCVI-SC AAA005]
Length = 294
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 130/243 (53%), Gaps = 26/243 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM A R + D++ VD+++E+RDAR+P +S+ L+N ++ +++ NK L
Sbjct: 17 WFPGHMRKALRGVGDQIKRVDVVIELRDARLPITSQNPDLQNL--LNNKPSLILFNKSGL 74
Query: 87 ASPTQFKEWITFFDQQNC-PSFGVNSHNKDNVKEF----LKFLQAHVRNLRKSDYDASSD 141
A +Q K+W + F ++ P V+ + + + ++ +Q+ NL++
Sbjct: 75 ADSSQIKKWESKFKNESTKPFVFVDVKKRKGLSQIIPISIRLVQSRWENLKRRGIRPP-- 132
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ +M++GIPNVGKS+L N+L + G A + G P+PG T+ + I N
Sbjct: 133 VLRLMVIGIPNVGKSSLINALARRG---ATQTG--------PKPGVTR--HPEWIVLGQN 179
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYF--LGILNFSDEYKKWAK 259
+LDTPGIL P+I + L L G+I D VG + L+ Y +G + F +++ + +
Sbjct: 180 AELLDTPGILWPKIQNTIDGLNLTLIGSIRDEIVGAESLSNYLIQIGKIRFPEKFSE--R 237
Query: 260 FSI 262
+SI
Sbjct: 238 YSI 240
>gi|343498815|ref|ZP_08736831.1| GTPase YlqF [Vibrio tubiashii ATCC 19109]
gi|418477959|ref|ZP_13047075.1| GTPase YlqF [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342823915|gb|EGU58503.1| GTPase YlqF [Vibrio tubiashii ATCC 19109]
gi|384574387|gb|EIF04858.1| GTPase YlqF [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 314
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 122/243 (50%), Gaps = 27/243 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + IA+ +P +D+I+EV DARIPFSSE +L+ P + VLNK
Sbjct: 8 WFPGHMHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMIAELKGDKPV-----VKVLNK 62
Query: 84 MDLASPTQFKEWITFFDQQ-NCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + WI F+++ N + + + V++ ++ VR L + +
Sbjct: 63 RDLADPELTQLWIDHFEKEHNVKAIAITTSQPQEVQKIMEL----VRKLAPHREEIGKNI 118
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
T M++GIPNVGKS + NSL GR A QP T+ +I I
Sbjct: 119 RT-MIMGIPNVGKSTIINSLA--GRTI---------AVTGNQPAVTR--RQQRINLQNGI 164
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262
+ DTPGIL P++ + +LA TGA+ D+ + E+A Y + L + + A++ I
Sbjct: 165 VLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKAYPQRLQARYEI 224
Query: 263 NQI 265
++
Sbjct: 225 EEL 227
>gi|425467123|ref|ZP_18846407.1| GTPase family protein [Microcystis aeruginosa PCC 9809]
gi|389830197|emb|CCI28014.1| GTPase family protein [Microcystis aeruginosa PCC 9809]
Length = 279
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 116/229 (50%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A R + + + LVD++LEVRDARIP +S HHP + R+L+L
Sbjct: 6 WYPGHIAKAERKLKEHLKLVDVVLEVRDARIPLAS-------HHPQVDDWIGNKPRLLIL 58
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDAS 139
N++D+ + ++W+T+F Q + N+ + VK +K + N ++
Sbjct: 59 NRLDMIPESAHQQWVTWFKSQGKTVYFTNAKQGERVKAIIKAAEKIGDEINQKRQLRGML 118
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
V +++G PNVGKSAL N L +GR A + + G T+ + ++I+
Sbjct: 119 PRPVRAVVIGFPNVGKSALINRL--LGRKVVAS---------ARRAGVTRQLQWVRISD- 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LD PG++P + + KLA+ IGD+ + +A F+ +L
Sbjct: 167 -TLELLDAPGVIPSRLDNQRDAVKLAICEDIGDAGYDNQRIAAAFVDLL 214
>gi|227824784|ref|ZP_03989616.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|352683803|ref|YP_004895787.1| hypothetical protein Acin_0404 [Acidaminococcus intestini RyC-MR95]
gi|226905283|gb|EEH91201.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|350278457|gb|AEQ21647.1| conserved hypothetical protein [Acidaminococcus intestini RyC-MR95]
Length = 290
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 118/240 (49%), Gaps = 39/240 (16%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM A R + + +VD+++E+ DARIP +S L+ S +I+ LNK D+
Sbjct: 14 WFPGHMTKAKRQMESELRMVDVVVELLDARIPRASANPLLKGL--IGSKVKIVALNKTDM 71
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL------------KFLQAHVRNLRKS 134
A P K W+T+F + + V+ VK L K+L+ VRN
Sbjct: 72 ADPLATKAWLTYFKEAGLKALEVDCQKGRGVKALLTAMREAGQPVIDKWLKKGVRN---- 127
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ +M++GIPNVGKS L N + +G+ AA + + PG T++ +
Sbjct: 128 ------HPIRIMIVGIPNVGKSTLINRI--LGKNKAAAQNR---------PGVTRNTQWV 170
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+I N+ +LDTPG+L P+ VE LA+TGAI + V +E+A L +L Y
Sbjct: 171 EIGK--NLELLDTPGVLWPKFEKVETGFHLAVTGAIKED-VFDREMAASIL-LLRLKKRY 226
>gi|260682865|ref|YP_003214150.1| GTPase [Clostridium difficile CD196]
gi|260686463|ref|YP_003217596.1| GTPase [Clostridium difficile R20291]
gi|260209028|emb|CBA62129.1| putative GTPase [Clostridium difficile CD196]
gi|260212479|emb|CBE03390.1| putative GTPase [Clostridium difficile R20291]
Length = 301
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 23/242 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM + + + L+D+++E+ DARIPFSS + D+L P R++VLNK
Sbjct: 21 WYPGHMKKTKELVKNNLKLIDVVIELLDARIPFSSKNPDIDRLVGDKP-----RVVVLNK 75
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKS--DYDASSD 141
D+A + +WI ++ + N + V++ + ++ + R S D
Sbjct: 76 SDMADRDKLNQWIEYYKKINIKAIPVDTIKGVGINNIIEECKNVTREKMSSLKDKGRKER 135
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ +M++G+PNVGKS+L N L GR + +PG TK +++ N
Sbjct: 136 AIRIMIVGVPNVGKSSLINKL--TGR---------KSTQTGDKPGVTKGKQWVRLKG--N 182
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
+ +LDTPGIL P+ D EV LA + AI D + + LA + L + K A++
Sbjct: 183 LELLDTPGILWPKFEDQEVALNLAFSRAIKDEILDTETLALRLIEKLMKIEPEKLKARYK 242
Query: 262 IN 263
++
Sbjct: 243 LD 244
>gi|15673276|ref|NP_267450.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. lactis
Il1403]
gi|385830824|ref|YP_005868637.1| Ribosome biogenesis GTPase A [Lactococcus lactis subsp. lactis
CV56]
gi|12724271|gb|AAK05392.1|AE006361_8 GTP-binding protein [Lactococcus lactis subsp. lactis Il1403]
gi|326406832|gb|ADZ63903.1| Ribosome biogenesis GTPase A [Lactococcus lactis subsp. lactis
CV56]
Length = 282
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 110/228 (48%), Gaps = 27/228 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM+ A R + + + VD ++E+ DAR+P SS Q+ P RI+ LNK
Sbjct: 5 WFPGHMSKARRQVQENLKYVDFVIELVDARLPISSRNPMLGQIIGDKP-----RIIALNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD--ASSD 141
DLA +WI FFD+Q + +NS + K + + + D + +
Sbjct: 60 ADLADSNAVAQWIEFFDEQGFVTLAINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHT 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
T+ M++GIPN GKS L N L GK + A +PG TK I ++
Sbjct: 120 TLRTMIIGIPNAGKSTLMNRLA----------GK-KVAVTGNRPGVTKG--QQWIRTNKE 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELA----QYFL 245
+ +LDTPGIL P+ D V KLALTGAI D + E+ YFL
Sbjct: 167 LELLDTPGILWPKFEDQLVGLKLALTGAIKDDLLPMDEVTIFGLNYFL 214
>gi|374296156|ref|YP_005046347.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
clariflavum DSM 19732]
gi|359825650|gb|AEV68423.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
clariflavum DSM 19732]
Length = 290
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 120/244 (49%), Gaps = 37/244 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HMA R +A+ + LVD+++E+ DARIP SS +FD + + P +I+VLNK
Sbjct: 5 WYPGHMAKTRRILAENIKLVDVVIELLDARIPISSKNPDFDDIFKNKP-----KIIVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS---- 139
DLA W +++ + + ++S N+ L+ +++L K +
Sbjct: 60 SDLADEKISSSWSKWYNSKGYANIFIDSIKGKNI----NLLKNKMQDLMKDKIERDKLKG 115
Query: 140 --SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
S + M++GIPNVGKS+L N + GR +A +PG T+ + +
Sbjct: 116 RISRPIRTMIVGIPNVGKSSLINKIA--GRASAV---------TGDRPGVTRGKQWINV- 163
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL------NFS 251
+ I +LDTPGIL P+ + EV LA+TGAI D + ELA L N
Sbjct: 164 -NDKIQLLDTPGILWPKFENPEVGINLAITGAIKDDVIDTVELASILFEKLARLYPKNLM 222
Query: 252 DEYK 255
+ YK
Sbjct: 223 ERYK 226
>gi|375008175|ref|YP_004981808.1| ribosome biogenesis GTPase A [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359287024|gb|AEV18708.1| Ribosome biogenesis GTPase A [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 288
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 34/234 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+ E+ DAR+P SS D + P R+++LNK
Sbjct: 8 WFPGHMAKAKREVQEKLKLIDVAFELLDARLPMSSRNPMIDDILGQKP-----RLILLNK 62
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
D+A ++WI +F Q + +++ + V++ + A + + K ++
Sbjct: 63 ADMADEAVTEQWIRYFHDQGRLALPIDAQSGTGVRQ----IAAAAKEMVKDKFEKMRAKG 118
Query: 139 --SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRH-ATVSPQPGETKDIYSLK 195
+ V +++GIPNVGKS L N L RH A +PG TK +K
Sbjct: 119 IKNPRPVRALIVGIPNVGKSTLINRLAG------------RHIAKTGDKPGVTKAQQWIK 166
Query: 196 IASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ + +LDTPGIL P+ D +V KLA+TGAI D + +++A Y L L+
Sbjct: 167 VGKE--MELLDTPGILWPKFEDEDVGYKLAVTGAIKDEILNLQDVAVYALRFLS 218
>gi|425436382|ref|ZP_18816818.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 9432]
gi|440752137|ref|ZP_20931340.1| ribosome biogenesis GTP-binding protein YlqF [Microcystis
aeruginosa TAIHU98]
gi|389678912|emb|CCH92274.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 9432]
gi|440176630|gb|ELP55903.1| ribosome biogenesis GTP-binding protein YlqF [Microcystis
aeruginosa TAIHU98]
Length = 279
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A R + + + LVD++LEVRDARIP +S HHP + R+L+L
Sbjct: 6 WYPGHIAKAERKLKEHLKLVDVVLEVRDARIPLAS-------HHPQVDDWIGNKPRLLIL 58
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDAS 139
N++D+ + ++W+T+F Q + N+ + VK +K + N ++
Sbjct: 59 NRLDMIPESAQQQWVTWFKSQGETVYFTNAKQGERVKAIIKAAEKIGDEINQKRQLRGML 118
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
V +++G PNVGKSAL N L +GR A + + G T+ + ++I+
Sbjct: 119 PRPVRAVVIGFPNVGKSALINRL--LGRKVVAS---------ARRAGVTRQLQWVRISD- 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LD PG++P + + + KLA+ IGD+ + +A F+ +L
Sbjct: 167 -TLELLDAPGVIPSRLENQKDAVKLAICEDIGDAGYDNQRIAAAFVDLL 214
>gi|343506580|ref|ZP_08744057.1| ribosomal biogenesis GTPase [Vibrio ichthyoenteri ATCC 700023]
gi|342802290|gb|EGU37726.1| ribosomal biogenesis GTPase [Vibrio ichthyoenteri ATCC 700023]
Length = 311
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 117/243 (48%), Gaps = 27/243 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + IA+ +P +D+I+EV DARIPFSSE +LR P I VLNK
Sbjct: 5 WFPGHMHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMISELRGEKPV-----IKVLNK 59
Query: 84 MDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + WI + +QN + + + V++ L+ + +
Sbjct: 60 RDLADPEMTQLWIEHLEKEQNVKAMAITTSQPQEVQKILELCRKMA-----PHREEIGKN 114
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS + NSL GR A QP T+ +I +
Sbjct: 115 IRTMIMGIPNVGKSTIINSLA--GRTI---------AITGNQPAVTR--RQQRINLQNGV 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262
+ DTPGIL P++ + +LA TGA+ D+ + E+A Y + L + + ++ I
Sbjct: 162 VLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAQAYPERLKERYQI 221
Query: 263 NQI 265
++
Sbjct: 222 EEL 224
>gi|422343784|ref|ZP_16424711.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas noxia
F0398]
gi|355378200|gb|EHG25391.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas noxia
F0398]
Length = 310
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 108/210 (51%), Gaps = 17/210 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A R + + + LVD+++E+ DARIP SS LR + R++VLNK DL
Sbjct: 25 WYPGHMRKAERLVKENLKLVDVVVELLDARIPMSSANPVLR--EIVNGKPRLIVLNKADL 82
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDASSDTVT 144
A T + W+ +F + + V++ VKE ++ + A + + + A +
Sbjct: 83 ADETATRAWVKYFAAEGLTAVPVDAVKGRGVKELVQAIAKCAKPKTDKLVHHGAKARAAR 142
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M+LGIPNVGKS+L N R++ K K V +PG T+ +++ + + +
Sbjct: 143 CMILGIPNVGKSSLIN------RLSGGSKTK-----VENRPGITRAKQWIRLGAQ--LEL 189
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSF 234
LD PGIL P+ D LA TGAI D+
Sbjct: 190 LDMPGILWPKFEDQNAALHLAFTGAINDNV 219
>gi|357637618|ref|ZP_09135493.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus macacae
NCTC 11558]
gi|357586072|gb|EHJ53275.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus macacae
NCTC 11558]
Length = 283
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 131/290 (45%), Gaps = 57/290 (19%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM+ A R I + + +D + + DAR+P SS+ L + ++LVLNK DL
Sbjct: 6 WFPGHMSKARRQIQENLKYIDFVTILADARLPLSSQNPML--NKIVGDKSKLLVLNKADL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEF----LKFLQAHVRNLRKSDYDASSDT 142
A + +W ++ ++ +N+ + +K+ + A +L K S+
Sbjct: 64 ADKQETAKWCAYYKKEGLKVLAINAKEQGVIKQINGAAKALMSAKFEHLHKKG--IQSNM 121
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS L N L GK + A+V +PG TK LK ++ ++
Sbjct: 122 MRTMIIGIPNVGKSTLMNRLA----------GK-KIASVGNKPGITKGQQWLK--TNKDL 168
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKE----------------LAQYFLG 246
+LDTPGIL P+ D V KLALTGAI D+ + E L +YF G
Sbjct: 169 EILDTPGILWPKFEDQFVGLKLALTGAIKDNILPMDEVTIFGLNYFKKHYPERLQEYFNG 228
Query: 247 I----------------LNFSDEYKKWAKFSINQINK----PLTLHHKAD 276
I L F D+Y ++ F I + P TL D
Sbjct: 229 IDLSEEAPEIIMNMTQKLGFRDDYDRFYSFFIKAVRNGKLGPYTLDKVVD 278
>gi|260101618|ref|ZP_05751855.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
helveticus DSM 20075]
gi|417007631|ref|ZP_11945406.1| GTP binding protein [Lactobacillus helveticus MTCC 5463]
gi|260084581|gb|EEW68701.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
helveticus DSM 20075]
gi|328467372|gb|EGF38450.1| GTP binding protein [Lactobacillus helveticus MTCC 5463]
Length = 283
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 118/241 (48%), Gaps = 26/241 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + D++ L+D+++EV DARIP SS + L + P I++LNK
Sbjct: 6 WYPGHMNKARNQLEDKLGLIDVLVEVLDARIPESSRNPMIEDLVGNKP-----HIIILNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRK--SDYDASSD 141
DLA P K W ++S + N+++ + ++ K AS+
Sbjct: 61 ADLADPVLTKNWSAKLSGPGKYVLAIDSLHNTNMQKLISMVKKAAAEKTKKLEARGASNP 120
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
T+ + L GIPN GKS + N L +GR AE G +PG TK L+ ++ N
Sbjct: 121 TIRIALAGIPNCGKSTIINRL--VGR-NVAEVGN--------KPGVTKGQRWLRTSN--N 167
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY-KKWAKF 260
I VLDTPGIL P+ D EV KLA GAI DS ++A Y L N Y K KF
Sbjct: 168 IQVLDTPGILWPKFSDQEVGYKLAAFGAIKDSVFHADDVALYVLE--NLRQHYLKDLTKF 225
Query: 261 S 261
S
Sbjct: 226 S 226
>gi|166364230|ref|YP_001656503.1| ribosomal biogenesis GTPase [Microcystis aeruginosa NIES-843]
gi|166086603|dbj|BAG01311.1| GTPase family protein [Microcystis aeruginosa NIES-843]
Length = 279
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 116/229 (50%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A R + + + LVD++LEVRDARIP +S HHP + R+L+L
Sbjct: 6 WYPGHIAKAERKLKEHLKLVDVVLEVRDARIPLAS-------HHPQVDDWIGNKPRLLIL 58
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDAS 139
N++D+ + ++W+T+F Q + N+ + VK +K + N ++
Sbjct: 59 NRLDMIPESAHQQWVTWFKSQGKTVYFTNAKQGERVKAIIKAAEKIGDEINQKRQLRGML 118
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
V +++G PNVGKSAL N L +GR A + + G T+ + ++I+
Sbjct: 119 PRPVRAVVIGFPNVGKSALINRL--LGRKVVAS---------ARRAGVTRQLQWVRISD- 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LD PG++P + + KLA+ IGD+ + +A F+ +L
Sbjct: 167 -TLELLDAPGVIPSRLDNQRDAVKLAICEDIGDAGYDNQRIAAAFVDLL 214
>gi|402818516|ref|ZP_10868099.1| ribosome biogenesis GTPase A [Paenibacillus alvei DSM 29]
gi|402503982|gb|EJW14514.1| ribosome biogenesis GTPase A [Paenibacillus alvei DSM 29]
Length = 292
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 112/225 (49%), Gaps = 25/225 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM A R I +++ L+D+ +E+ DAR+P SS + + + R++++NK DL
Sbjct: 5 WFPGHMTRARRQIQEKLKLIDVAIELLDARLPMSSRNPMI--NDILGNKPRLIIMNKCDL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ASS 140
A P +W+ +F + V++ NV + + R L + +
Sbjct: 63 ADPDVTAKWMKYFRNEGHAVIAVDASTGSNVSQ----IPGEARKLLEEKFQKQIAKGMKP 118
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
V +++GIPNVGKS L N L GR AA +PG TK +++ S
Sbjct: 119 RPVRALIVGIPNVGKSTLINKLA--GRTVAA---------TGDRPGVTKGQQWIRVGSE- 166
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ D EV +LA TGAI + + +++A Y L
Sbjct: 167 -MELLDTPGILWPKFEDQEVGYRLATTGAIREEILNVEDIAFYAL 210
>gi|425461781|ref|ZP_18841255.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 9808]
gi|389825303|emb|CCI25027.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 9808]
Length = 279
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A R + + + LVD++LEVRDARIP +S HHP + R+L+L
Sbjct: 6 WYPGHIAKAERKLKEHLKLVDVVLEVRDARIPLAS-------HHPQVDDWIGNKPRLLIL 58
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDAS 139
N++D+ + ++W+T+F Q + N+ + VK +K + N ++
Sbjct: 59 NRLDMIPESAQQQWVTWFKSQGETVYFTNAKQGERVKAIIKAAEKIGDEINQKRQLRGML 118
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
V +++G PNVGKSAL N L +GR A + + G T+ + ++I+
Sbjct: 119 PRPVRAVVIGFPNVGKSALINRL--LGRKVVAS---------ARRAGVTRQLQWVRISD- 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LD PG++P + + + KLA+ IGD+ + +A F+ +L
Sbjct: 167 -TLELLDAPGVIPSRLENQKDAVKLAICEDIGDAGYDNQRIAAAFVDLL 214
>gi|323691867|ref|ZP_08106121.1| ribosomal biogenesis GTPase [Clostridium symbiosum WAL-14673]
gi|323504074|gb|EGB19882.1| ribosomal biogenesis GTPase [Clostridium symbiosum WAL-14673]
Length = 284
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 112/227 (49%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A RA+ + + L+D+++E+ DAR+P S + D+L + RI++LNK
Sbjct: 5 WYPGHMTKAKRAMKEDIKLIDLVIELVDARVPLGSRNPDIDELAKNKG-----RIILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DLA ++W +F ++ VN+ + +K+ +Q R + D +
Sbjct: 60 SDLADEKYNEKWTAWFQEKGFHVIKVNARSGMGLKQIQPLVQEACREKIERDRKRGILNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M++GIPNVGKS NS GK T +PG TK +++ +
Sbjct: 120 PVRTMVVGIPNVGKSTFINSFA----------GKACTKT-GNKPGVTKGNQWIRL--NKT 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P D EV KLA G+I D + +ELA L L
Sbjct: 167 LELLDTPGILWPRFEDQEVGLKLAFIGSINDEIIDKEELAAELLKFL 213
>gi|146292852|ref|YP_001183276.1| ribosomal biogenesis GTPase [Shewanella putrefaciens CN-32]
gi|145564542|gb|ABP75477.1| GTP-binding protein, HSR1-related [Shewanella putrefaciens CN-32]
Length = 313
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 116/227 (51%), Gaps = 31/227 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + I + MP VD+++EV DARIP+SSE QLR P I +LNK
Sbjct: 5 WYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVAQLRGDKPC-----IKLLNK 59
Query: 84 MDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P +WI + + +Q + + + VK+ + V + K++ D
Sbjct: 60 SDLADPEITAQWIEYLEREQGVKATAITTLQAAMVKKIPDLCRKLVPSRDKTEKD----- 114
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS + N+L GR+ A +P TK +I I
Sbjct: 115 IRTMIMGIPNVGKSTIINTLA--GRVI---------AKTGNEPAVTKT--QQRINLRNGI 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKEL----AQYFL 245
+ DTPGIL P++ + +LA+TGAI D+ + +++ A+YFL
Sbjct: 162 VLSDTPGILWPKVDNEASSYRLAVTGAIKDTAMEYEDVALFAAKYFL 208
>gi|253578397|ref|ZP_04855669.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850715|gb|EES78673.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 283
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A R + + + L+D+I+E+ DAR+P SS + D+L + R+++LNK
Sbjct: 7 WYPGHMTKAKRQMQEDIKLIDLIIELVDARVPLSSRNPDIDELGKNKS-----RLILLNK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD--YDASSD 141
DLA Q + W T+F + V+S N +K +Q + + D +
Sbjct: 62 SDLADERQNEAWKTYFQAKGFYVVKVDSRNGSGMKAINNVIQEACKEKIERDRRRGIKNR 121
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS N+ GR A K PG TK +++ +
Sbjct: 122 PIRAMVVGIPNVGKSTFINTFA--GRACAKTGNK---------PGVTKGKQWIRL--NKG 168
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P+ D +V +LA G+I D + +ELA + + L
Sbjct: 169 VELLDTPGILWPKFEDQQVGIRLACVGSIKDDILNMEELALWLIDYL 215
>gi|120599077|ref|YP_963651.1| ribosomal biogenesis GTPase [Shewanella sp. W3-18-1]
gi|120559170|gb|ABM25097.1| GTP-binding protein, HSR1-related [Shewanella sp. W3-18-1]
Length = 313
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 116/227 (51%), Gaps = 31/227 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + I + MP VD+++EV DARIP+SSE QLR P I +LNK
Sbjct: 5 WYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVAQLRGDKPC-----IKLLNK 59
Query: 84 MDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P +WI + + +Q + + + VK+ + V + K++ D
Sbjct: 60 SDLADPEITAQWIEYLEREQGVKATAITTLQAAMVKKIPDLCRKLVPSRDKTEKD----- 114
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS + N+L GR+ A +P TK +I I
Sbjct: 115 IRTMIMGIPNVGKSTIINTLA--GRVI---------AKTGNEPAVTKT--QQRINLRNGI 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKEL----AQYFL 245
+ DTPGIL P++ + +LA+TGAI D+ + +++ A+YFL
Sbjct: 162 VLSDTPGILWPKVDNEASSYRLAVTGAIKDTAMEYEDVALFAAKYFL 208
>gi|297584020|ref|YP_003699800.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus
selenitireducens MLS10]
gi|297142477|gb|ADH99234.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus
selenitireducens MLS10]
Length = 285
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 115/234 (49%), Gaps = 31/234 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R + +++ +D+++EV DAR P +S D++ P R+++LNK
Sbjct: 5 WYPGHMAKARRQVQEKIKQIDVVIEVCDARAPLASRNPLVDEMTRSKP-----RLMLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
DLA P ++W +F++Q V++ +K+ + V L K Y+
Sbjct: 60 SDLADPEMNRKWADYFEKQGDAVLIVDAQKGKGIKD----IPGKVNELAKPLYEKWARKK 115
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ + +++GIPN GKS + N L GK R + +PG TK +K+
Sbjct: 116 VNPRPIRALIIGIPNAGKSTVINRLA----------GK-RITKIGDKPGVTKAQQWIKVD 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFS 251
++ LDTPGIL P+ D V LALTGAI + +E A Y L L+ S
Sbjct: 165 RQLDL--LDTPGILWPKFEDPHVGQMLALTGAIKEEIFDYEESAVYLLRFLSQS 216
>gi|392940892|ref|ZP_10306536.1| LOW QUALITY PROTEIN: ribosome biogenesis GTP-binding protein YlqF
[Thermoanaerobacter siderophilus SR4]
gi|392292642|gb|EIW01086.1| LOW QUALITY PROTEIN: ribosome biogenesis GTP-binding protein YlqF
[Thermoanaerobacter siderophilus SR4]
Length = 277
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 112/223 (50%), Gaps = 17/223 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA + + I + LVD++ E+ DARIP SS + + +RI++LNK DL
Sbjct: 4 WYPGHMAKSKKEIVSNLKLVDVVYEIVDARIPKSSRNPDIDDI--VKIKKRIILLNKADL 61
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN-LRKSDYDASSDTVTV 145
A WI +F ++ + VNS +KE + Q ++ L K +
Sbjct: 62 ADDVITDLWIEYFKEKGIEAVKVNSITGFGLKEINEATQRVCQDILDKKKQKGMIPRLRG 121
Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVL 205
M++G+PNVGKS N L IG + A +PG T+ ++ +K P +L
Sbjct: 122 MIVGVPNVGKSTFINKL--IGS---------KRAKTGDKPGVTRALHWIK---TPYFDLL 167
Query: 206 DTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
DTPGIL P+ D +V LA+TGAI D + +E+A + IL
Sbjct: 168 DTPGILWPKFDDKKVGIMLAITGAIKDEILDIEEIALNLVAIL 210
>gi|71280798|ref|YP_268441.1| ribosomal biogenesis GTPase [Colwellia psychrerythraea 34H]
gi|71146538|gb|AAZ27011.1| GTP-binding protein [Colwellia psychrerythraea 34H]
Length = 310
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 112/222 (50%), Gaps = 28/222 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + I + +P +D+++EV DAR+PFSSE ++R P I +LNK
Sbjct: 5 WFPGHMHKAQKEIKEILPQIDVVIEVCDARLPFSSENPMITEIRGDKPL-----IKILNK 59
Query: 84 MDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P K W+ + + Q N + + + K + ++ V N D
Sbjct: 60 SDLADPESTKVWLDYLESQHNVKAIALTTEQPSVAKNLVNLIRKLVPN-----KDEEGKQ 114
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS L N+L +G+ A V +P TK +++ +
Sbjct: 115 INAMIMGIPNVGKSTLLNTL--VGKA---------KAKVGNEPAVTKGQQRIRLEE--GL 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYF 244
Y+ DTPG+L P+I + +LA++GA+ D+ ++A YF
Sbjct: 162 YLFDTPGMLWPKIANENSGYRLAVSGAVKDTAFDHDDIA-YF 202
>gi|323484794|ref|ZP_08090151.1| hypothetical protein HMPREF9474_01902 [Clostridium symbiosum
WAL-14163]
gi|355627810|ref|ZP_09049441.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
7_3_54FAA]
gi|323401900|gb|EGA94241.1| hypothetical protein HMPREF9474_01902 [Clostridium symbiosum
WAL-14163]
gi|354820135|gb|EHF04561.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
7_3_54FAA]
Length = 284
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 112/227 (49%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A RA+ + + L+D+++E+ DAR+P S + D+L + RI++LNK
Sbjct: 5 WYPGHMTKAKRAMKEDIKLIDLVIELVDARVPLGSRNPDIDELAKNKG-----RIILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DLA ++W +F ++ VN+ + +K+ +Q R + D +
Sbjct: 60 SDLADERYNEKWTAWFQEKGFHVIKVNARSGMGLKQIQPLVQEACREKIERDRKRGILNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M++GIPNVGKS NS GK T +PG TK +++ +
Sbjct: 120 PVRTMVVGIPNVGKSTFINSFA----------GKACTKT-GNKPGVTKGNQWIRL--NKT 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P D EV KLA G+I D + +ELA L L
Sbjct: 167 LELLDTPGILWPRFEDQEVGLKLAFIGSINDEIIDKEELAAELLKFL 213
>gi|373494759|ref|ZP_09585358.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium infirmum
F0142]
gi|371967803|gb|EHO85271.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium infirmum
F0142]
Length = 280
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 113/233 (48%), Gaps = 25/233 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM I + LVDI++EV DARIP SS D+L + +RI++LNK
Sbjct: 8 WYPGHMKKTRELITSNLKLVDIVIEVIDARIPVSSRNPVIDEL-----TAGKQRIIILNK 62
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTV 143
DLA + K W+ ++S + +KE L + ++ K +
Sbjct: 63 SDLADGNETKRWMEKLGTDGIKVMTLDSMHGVGIKELLNLMTKIQDDINKD--RVRKKNL 120
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
+M++G+PNVGKS+L N L GK + A +PG TK L +++ +
Sbjct: 121 RLMIVGVPNVGKSSLINRLT----------GK-KSAKTGDKPGVTKGKQWLTLSN--GMQ 167
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKK 256
+LDTPGIL P+ D V KLA G+I D + + LA + +L DEY K
Sbjct: 168 LLDTPGILWPKFEDESVGIKLAFCGSIKDEILDLETLALRLIELL--QDEYPK 218
>gi|402834432|ref|ZP_10883034.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp. CM52]
gi|402278050|gb|EJU27116.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp. CM52]
Length = 276
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 108/213 (50%), Gaps = 17/213 (7%)
Query: 39 IADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITF 98
+ + + LVD+++E+ DARIP +S LR R++ LNK DLA K W+ +
Sbjct: 1 MEENLKLVDVVVELLDARIPAASANPMLR--EIVGDKPRVVALNKRDLADEKMTKCWLEY 58
Query: 99 FDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDASSDTVTVMLLGIPNVGKS 156
F Q P+ ++S ++E L ++ A R R ++ VM+LGIPNVGKS
Sbjct: 59 FRAQKLPAVALDSVTGKGMRELLALIEKAAKHRTERLVSKGVAARKARVMILGIPNVGKS 118
Query: 157 ALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIH 216
+L N R+ A K K + +PG T+ ++I + ++ +LDTPGIL P+
Sbjct: 119 SLIN------RLAGAAKAK-----TADKPGVTRAKQWIRIGA--DVDLLDTPGILWPKFE 165
Query: 217 DVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
D V KLA TGA+ D + +A L L
Sbjct: 166 DRAVGLKLAFTGAVNDEIYDLENVAHLLLAALR 198
>gi|24374133|ref|NP_718176.1| 50s ribosomal subunit maturation GTPase RbgA [Shewanella oneidensis
MR-1]
gi|24348629|gb|AAN55620.1| 50s ribosomal subunit maturation GTPase RbgA [Shewanella oneidensis
MR-1]
Length = 313
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 125/247 (50%), Gaps = 31/247 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + I + MP VD+++EV DARIP+SSE +LR P I +LNK
Sbjct: 5 WYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVSKLRGDKPC-----IKLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKE-FLKFLQAHVRNLRKSDYDASSDT 142
DLA P +WI + +++ GV + ++ LK L R L S D +
Sbjct: 60 SDLADPEVTAQWIEYLEREQ----GVKATAITTLQPGMLKMLPDLCRKLVPS-RDKTEKD 114
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS + N+L GR+ A +P TK +I I
Sbjct: 115 IRTMIMGIPNVGKSTIINTLA--GRVI---------AKTGNEPAVTKT--QQRINLRNGI 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKK--WAKF 260
+ DTPGIL P++ + +LA+TGAI D+ + +++A + G F Y K ++
Sbjct: 162 VLSDTPGILWPKVDNEASSYRLAVTGAIKDTAMEYEDVALFAAGY--FLKAYPKEICERY 219
Query: 261 SINQINK 267
+I+++ K
Sbjct: 220 NISELPK 226
>gi|449464824|ref|XP_004150129.1| PREDICTED: ribosome biogenesis GTPase A-like [Cucumis sativus]
gi|449507918|ref|XP_004163166.1| PREDICTED: ribosome biogenesis GTPase A-like [Cucumis sativus]
Length = 370
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 112/225 (49%), Gaps = 19/225 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H+A + + D++ L+D+++EVRDARIP S+ Q+ + RRILVLN+ D+
Sbjct: 95 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPMSTSHPQMDAW--LGNRRRILVLNREDM 152
Query: 87 ASPTQFKEWITFFDQQNCP-SFGVNSHNKDNVK--EFLKFLQAHVRNLRKSDYDASSDTV 143
S W T+F +Q F H +K K L A V N+++ V
Sbjct: 153 ISSADRNAWATYFTRQGIKVVFSNGQHGMGTMKLGRLAKTLAADV-NVKRRAKGLLPRAV 211
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
++G PNVGKS+L N L K R +P+PG T+++ ++ + ++
Sbjct: 212 RAGIVGYPNVGKSSLINRLL-----------KRRMCPAAPRPGVTRELKWVRFGN--DLE 258
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+LD+PGI+P I D KLA+ IG+ ++A + IL
Sbjct: 259 LLDSPGIIPMRISDQTAAIKLAICDDIGERSYNAADVAAILVQIL 303
>gi|354559594|ref|ZP_08978841.1| ribosome biogenesis GTP-binding protein YlqF [Desulfitobacterium
metallireducens DSM 15288]
gi|353541231|gb|EHC10700.1| ribosome biogenesis GTP-binding protein YlqF [Desulfitobacterium
metallireducens DSM 15288]
Length = 274
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 117/224 (52%), Gaps = 24/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + D++ VD+++E+ DAR+P SS QL P +I++LNK
Sbjct: 5 WFPGHMAKAKRLLLDQLKWVDVVVELGDARVPESSRNPLLQQLIKDKP-----KIVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV--RNLRKSDYDASSD 141
DLA P W+ ++ P V++ V + + L+ + + R + +
Sbjct: 60 ADLADPQWTDIWLNEL-KKTSPVLAVSATAGFGVGKIVPELERLMAGKQERMAAKGVRAR 118
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
++ M++GIPN+GKS+L N L T + K K +PG T+ ++I H
Sbjct: 119 SIRAMVIGIPNIGKSSLINQL------TGSAKAK-----TGNKPGVTRGNQWIRI--HDK 165
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ ++DTPG+L P+ D EV +KLA TG I D + +EL+++ L
Sbjct: 166 VELMDTPGLLWPKFEDPEVGNKLAATGTIRDEVLNQEELSEWLL 209
>gi|325262273|ref|ZP_08129010.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp. D5]
gi|324032105|gb|EGB93383.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp. D5]
Length = 283
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 110/230 (47%), Gaps = 23/230 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A R + + + L+D+++E+ DARIP SS E D L + R+++LNK
Sbjct: 5 WYPGHMTKAKRMMQENIKLIDLVIELVDARIPVSSRNPEIDDLGKNKA-----RLILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DLA W +F + VNS +K +Q + + D +
Sbjct: 60 SDLAEDKWNDAWAEYFKGKGYSVVKVNSKKGGGIKSIQGVIQEACKEKIERDRKRGILNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M++GIPNVGKS N+L GK T +PG TK +++ + N
Sbjct: 120 PVRAMVVGIPNVGKSTFINALA----------GKACTKT-GNKPGVTKGKQWIRL--NKN 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFS 251
+ +LDTPGIL P+ D V +LA G+I D + +ELA +G L S
Sbjct: 167 VELLDTPGILWPKFEDQTVGLRLAFIGSIKDEILNSEELAMELIGFLKQS 216
>gi|313892603|ref|ZP_07826190.1| ribosome biogenesis GTP-binding protein YlqF [Dialister
microaerophilus UPII 345-E]
gi|313119000|gb|EFR42205.1| ribosome biogenesis GTP-binding protein YlqF [Dialister
microaerophilus UPII 345-E]
Length = 286
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 17/243 (6%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA R I + + VD+ +E+ DARIP SS + N + RI+VLNK DL
Sbjct: 5 WFPGHMAKTKRLITEHLKAVDVAVELLDARIPMSSANPMVENL--VQNKPRIIVLNKSDL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSDTVT 144
A ++WI +F ++N V+++N + K+ + ++ + + + + +V
Sbjct: 63 ADVKITEKWIEYFKKENIDVIPVSTYNGKDKKKLINLIREKAKPVLEKWQRRGLKNRSVR 122
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
+M+LGIPNVGKS L N L + + PG TK ++++S + +
Sbjct: 123 IMILGIPNVGKSTLINFLSGS-----------KATRTANTPGHTKGKQWVRLSS--GLDL 169
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
LDTPG+L P+ D KLA TGAI E+ L L K+ I
Sbjct: 170 LDTPGVLWPKFEDQNAALKLAATGAIAGEIFDSYEVVTTLLAALKEISPQILKEKYDIED 229
Query: 265 INK 267
+N+
Sbjct: 230 VNQ 232
>gi|403378827|ref|ZP_10920884.1| protein RbgA [Paenibacillus sp. JC66]
Length = 286
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 113/223 (50%), Gaps = 29/223 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A R I ++ ++D+ +E+ DARIP +S D + P R+++LNK
Sbjct: 5 WFPGHMTRARRQIEAKLNIIDMAIELMDARIPLASRNPMIDDILQRKP-----RLILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN-----LRKSDYDA 138
DLA W++FF +Q + V+S + VKE + +A + + +RK
Sbjct: 60 ADLADAQVTARWVSFFQEQGIEALPVDSVSGTRVKEIVPACKALLADKIEAQIRKG---M 116
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
+ +++GIPNVGKS L N L GR + A +PG TK ++I
Sbjct: 117 KPRPIRALIVGIPNVGKSTLINRLA--GR---------KAAITGDRPGVTKGQQWIRIGG 165
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELA 241
+ +LDTPGIL P+ D +V +LA TGAI D + +++A
Sbjct: 166 E--LELLDTPGILWPKFEDQQVGIRLAATGAIKDELLHQQDIA 206
>gi|91086203|ref|XP_971754.1| PREDICTED: similar to Mitochondrial GTPase 1, mitochondrial
precursor (GTP-binding protein 7) [Tribolium castaneum]
gi|270010239|gb|EFA06687.1| hypothetical protein TcasGA2_TC009617 [Tribolium castaneum]
Length = 317
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 115/240 (47%), Gaps = 18/240 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMD 85
W+ HM + + ++ +D I+EV DARIP S + + S + ILVLNK+D
Sbjct: 24 WFPGHMGRGLKQMQHKLRSIDCIIEVHDARIPISGRNTDFK--YTISGIKPHILVLNKVD 81
Query: 86 LAS----PTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSD 141
L P+ F +N VK Q ++N + + + D
Sbjct: 82 LIDKKLIPSIKNRLKNEF--ENVVFTNCKDQQCKGVKTLFPLAQNLIKNSDRFNRSQAED 139
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHP 200
VM++G+PNVGKS+L N+L R+ KG H V PG T+ + + +K++ P
Sbjct: 140 Q-CVMIIGVPNVGKSSLINAL----RVRNLHKGNATH--VGATPGITRSVLTKIKMSEDP 192
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKF 260
Y+LDTPGIL P+I EV KLAL I D VG +A Y L LN + Y + KF
Sbjct: 193 LCYMLDTPGILTPKIESAEVGLKLALCATIQDHLVGEGVIADYLLFWLNKNGHY-NYVKF 251
>gi|392552881|ref|ZP_10300018.1| GTPase YlqF [Pseudoalteromonas spongiae UST010723-006]
Length = 314
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 109/228 (47%), Gaps = 41/228 (17%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A I + MP +D+I+EV DARIP+SSE LR P I +LNK
Sbjct: 5 WFPGHMNKARNEIKEIMPQMDVIIEVLDARIPYSSENPMVGDLRGDKPV-----IKILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDN--------VKEFLKFLQAHVRNLRKSD 135
DLA P K W+T+ +++ GV + DN + + K L H K
Sbjct: 60 ADLADPEMTKAWMTYLERE----AGVKTLPLDNNKSSEVHLINDLCKKLVPHKVGADKQ- 114
Query: 136 YDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLK 195
+ M++GIPNVGKS L N+L GRI A +P TK K
Sbjct: 115 -------IKAMIMGIPNVGKSTLINTLA--GRIV---------AKTGNEPAVTK--AQQK 154
Query: 196 IASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
I I + DTPG+L P++ + +LA TGAI D+ + +E+A Y
Sbjct: 155 IRLEDGIMLYDTPGMLWPKVENENSGYRLAATGAIRDTAINYEEVASY 202
>gi|390629742|ref|ZP_10257734.1| GTP-binding protein RbgA [Weissella confusa LBAE C39-2]
gi|390484914|emb|CCF30082.1| GTP-binding protein RbgA [Weissella confusa LBAE C39-2]
Length = 292
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 112/237 (47%), Gaps = 34/237 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + + + VDI+ E+ DARIP SS E D++ P R+LV+ K
Sbjct: 7 WFPGHMAKAFRLMRENLKYVDIVFELVDARIPVSSRNPELDEVLGQKP-----RLLVMTK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT- 142
DLA P + K W +F+ Q +++ + + R + + A +
Sbjct: 62 TDLADPERTKAWKKYFEAQGMEVVALDTRGHKTPQ----IMTKAARKVLADKWAALEEKG 117
Query: 143 -----VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ ++ GIPNVGKS L N L +T A +PG TK + LK
Sbjct: 118 VKDKPIRALVAGIPNVGKSTLLNHL-----VTK------NVAITGDRPGVTKKLQWLKTP 166
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+ N+ +LDTPG+L P+ D V LA+TGAI D + ++A L L F EY
Sbjct: 167 T--NLELLDTPGVLWPKFEDQRVGEHLAMTGAIKDQLINQDDIA---LATLKFMREY 218
>gi|357616532|gb|EHJ70245.1| mitochondrial GTPase 1 [Danaus plexippus]
Length = 335
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 120/234 (51%), Gaps = 13/234 (5%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM + + ++ VD ++EV DARIPFS + + + ILV NK DL
Sbjct: 26 WFPGHMNKGLKQMQRKLKSVDCVIEVHDARIPFSGR-NPIFTSTITGAKPHILVFNKKDL 84
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD--YDASSDT-V 143
P + ++ V ++ KD LK L+ + +L K+ Y+ S +
Sbjct: 85 TIPKLLPKVKDQLREEEGIQNVVFTNCKDQSCRGLKSLRPLIVDLIKNSNRYNRSEEIDY 144
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHAT-VSPQPGETKDIYS-LKIASHPN 201
VM++G+PNVGKS+L N L + +RHA V G T+ + + +KI ++P
Sbjct: 145 NVMIIGVPNVGKSSLINMLR-------STYMHVRHALPVGAVAGVTRSLMTKMKINNNPK 197
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYK 255
I++ DTPGIL P + DVE+ KLAL ++ D VG + +A Y L LN + +K
Sbjct: 198 IFMFDTPGILEPSVKDVEMGLKLALCASLQDHLVGEEAIADYLLYWLNSHNNFK 251
>gi|117920838|ref|YP_870030.1| ribosomal biogenesis GTPase [Shewanella sp. ANA-3]
gi|117613170|gb|ABK48624.1| GTP-binding [Shewanella sp. ANA-3]
Length = 313
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 125/247 (50%), Gaps = 31/247 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + I + MP VD+++EV DARIP+SSE +LR P I +LNK
Sbjct: 5 WYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVSKLRGDKPC-----IKLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKE-FLKFLQAHVRNLRKSDYDASSDT 142
DLA P +WI + +++ GV + ++ LK L R L S D +
Sbjct: 60 SDLADPEITAQWIEYLEREQ----GVKATAITTLQPGMLKMLPDLCRKLVPS-RDKTEKD 114
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS + N+L GR+ A +P TK +I I
Sbjct: 115 IRTMIMGIPNVGKSTIINTLA--GRVI---------AKTGNEPAVTKS--QQRINLRNGI 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKK--WAKF 260
+ DTPGIL P++ + +LA+TGAI D+ + +++A + G F Y K ++
Sbjct: 162 VLSDTPGILWPKVDNEASSYRLAVTGAIKDTAMEYEDVALFAAGY--FLKAYPKEICERY 219
Query: 261 SINQINK 267
+I+++ K
Sbjct: 220 NISELPK 226
>gi|194744004|ref|XP_001954488.1| GF18288 [Drosophila ananassae]
gi|190627525|gb|EDV43049.1| GF18288 [Drosophila ananassae]
Length = 322
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 119/252 (47%), Gaps = 16/252 (6%)
Query: 19 VSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-R 77
V K+ W+ HM + I ++ VD I+E+ DARIP + Q + S +
Sbjct: 14 VPAKQRINWFPGHMTKGMKQIQQKLRNVDCIVEIHDARIPLAGRNSQFFDTITGSGVKPH 73
Query: 78 ILVLNKMDLASPTQFKEWITFFDQQNCPSFG----VNSHNKDNVKEFLKFLQAHVRNLRK 133
ILVLNK+DL P + K + QQ P N ++ N L L R + +
Sbjct: 74 ILVLNKVDLLGPKKQKSVLQQLRQQQ-PELKNILFTNCKDQRN-HGVLDILPLATRLVNE 131
Query: 134 SDYDASSDTV--TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDI 191
S + T VM++G+PNVGKS++ N L + K A V + G T+ +
Sbjct: 132 SSRFNRTQTTENNVMIIGVPNVGKSSIINVLRNV------HLKKKSAARVGAEAGITRAV 185
Query: 192 -YSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNF 250
+KI +P +Y++DTPGIL P I D E+ KLAL G + D VG +A Y L LN
Sbjct: 186 GERIKIQENPPVYMIDTPGILQPSIKDDEMGMKLALVGCLPDHIVGEDLIADYLLYWLNT 245
Query: 251 SDEYKKWAKFSI 262
+Y K +
Sbjct: 246 HRKYAYVEKLHL 257
>gi|169830847|ref|YP_001716829.1| HSR1-like GTP-binding protein [Candidatus Desulforudis audaxviator
MP104C]
gi|169637691|gb|ACA59197.1| GTP-binding protein, HSR1-related [Candidatus Desulforudis
audaxviator MP104C]
Length = 284
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 110/225 (48%), Gaps = 23/225 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA R I +++ L D++ E+ DARIP SS ++L H P RIL+L K
Sbjct: 5 WYPGHMAKTKRLIREQLRLCDLVFELADARIPQSSRNPVLNELTAHKP-----RILILTK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTV 143
DLA PT+ EWI F Q P+ N+ + ++ + VR+L K+
Sbjct: 60 PDLADPTRTGEWIEVFGTQGIPALKFNAVRGG--ESGIRTVMRTVRDLLKNPAGNRPRAY 117
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
+ +GIPNVGKS+ N R+T R A PG T+ +++ +
Sbjct: 118 RAVTVGIPNVGKSSFIN------RLTGQ-----RVAQTGKAPGTTRGKQWIRVNRW--LE 164
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+LDTPG L P++ V KLA TGAI + +E+A + + L
Sbjct: 165 LLDTPGTLWPKLGSPAVGFKLAATGAIREEVFSREEVAGWLVSWL 209
>gi|329121229|ref|ZP_08249856.1| ribosome biogenesis GTP-binding protein YlqF [Dialister
micraerophilus DSM 19965]
gi|327470163|gb|EGF15626.1| ribosome biogenesis GTP-binding protein YlqF [Dialister
micraerophilus DSM 19965]
Length = 286
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 17/243 (6%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA R I + + VD+ +E+ DARIP SS + N + RI+VLNK DL
Sbjct: 5 WFPGHMAKTKRLITEHLKAVDVAVELLDARIPMSSANPMVENL--VQNKPRIIVLNKSDL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSDTVT 144
A ++WI +F ++N V+++N + K+ + ++ + + + + +V
Sbjct: 63 ADVKITEKWIEYFKKENIDVIPVSTYNGKDKKKLINLIREKAKPVLEKWQRRGLKNRSVR 122
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
+M+LGIPNVGKS L N L + + PG TK ++++S + +
Sbjct: 123 IMILGIPNVGKSTLINFLSGS-----------KATRTANTPGHTKGKQWVRLSS--GLDL 169
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
LDTPG+L P+ D KLA TGAI E+ L L K+ I
Sbjct: 170 LDTPGVLWPKFEDQNAALKLAATGAIAGEIFDSYEVVTTLLAALKEISPQILKEKYDIED 229
Query: 265 INK 267
+N+
Sbjct: 230 VNQ 232
>gi|262046366|ref|ZP_06019328.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
crispatus MV-3A-US]
gi|260573237|gb|EEX29795.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
crispatus MV-3A-US]
Length = 279
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 121/246 (49%), Gaps = 25/246 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + D++ L+D+ +EV DARIP +S + L + P I++LNK
Sbjct: 6 WYPGHMNKARNQLEDKLGLIDVWVEVLDARIPQASRNPMIEGLVGNKP-----HIIILNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
DLA P K W N ++S + N+++ + ++ + AS+
Sbjct: 61 ADLADPVLTKAWAAELAGDNKYVLALDSLHNTNMQKLVSLVKKAAAAKTEKLEARGASNP 120
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
T+ + L GIPN GKS + N L +GR A V +PG TK LK ++ N
Sbjct: 121 TIRIALAGIPNCGKSTVINRL--VGR---------NVAEVGNKPGVTKGQRWLK--TNAN 167
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKWAK 259
I VLDTPGIL P+ D EV KLA GAI DS ++A + L L ++ + K++K
Sbjct: 168 IQVLDTPGILWPKFSDQEVGYKLAAFGAIKDSVFHADDVALFVLKNLREFYAKDLLKFSK 227
Query: 260 FSINQI 265
QI
Sbjct: 228 LPEQQI 233
>gi|425441787|ref|ZP_18822054.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 9717]
gi|389717396|emb|CCH98497.1| Similar to tr|Q4C7Z2|Q4C7Z2_CROWT GTP-binding [Microcystis
aeruginosa PCC 9717]
Length = 279
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 116/229 (50%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A R + + + LVD++LEVRDARIP +S HHP + R+L+L
Sbjct: 6 WYPGHIAKAERKLKEHLKLVDVVLEVRDARIPLAS-------HHPQVDDWIGNKPRLLIL 58
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDAS 139
N++D+ + ++W+T+F Q + N+ + VK +K + N ++
Sbjct: 59 NRLDMIPESAQQQWVTWFKSQGKTVYFTNAKQGERVKAIIKAAEKIGDEINQKRQLRGML 118
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
V +++G PNVGKSAL N L +GR A + + G T+ + ++I+
Sbjct: 119 PRPVRAVVIGFPNVGKSALINRL--LGRKVVAS---------ARRAGVTRQLQWVRISD- 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LD PG++P + + KLA+ IGD+ + +A F+ +L
Sbjct: 167 -TLELLDAPGVIPSRLDNQRDAVKLAICEDIGDAGYDNQRIAAAFVDLL 214
>gi|260777528|ref|ZP_05886422.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio
coralliilyticus ATCC BAA-450]
gi|260607194|gb|EEX33468.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio
coralliilyticus ATCC BAA-450]
Length = 314
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 114/229 (49%), Gaps = 33/229 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + I + +P VD+I+EV DARIPFSSE ++R P + VLNK
Sbjct: 8 WFPGHMHKARKEIEEAIPQVDVIIEVLDARIPFSSENPMISEIRGEKPV-----VKVLNK 62
Query: 84 MDLASPTQFKEWITFFDQQ-NCPSFGVNSHNKDNVKEFLKF---LQAHVRNLRKSDYDAS 139
DLA P + WI F+++ N + + + N V + L+ L H + K+
Sbjct: 63 RDLADPELTQLWIEHFEKEHNVKAMAITTSNTQEVNKILELCRKLAPHREEIGKN----- 117
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS + N+L GR A QP T+ +I
Sbjct: 118 ---IRTMIMGIPNVGKSTIINTLA--GRTIAV---------TGNQPAVTR--RQQRINLQ 161
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
I + DTPGIL P++ + +LA TGA+ D+ + +E+A Y + L
Sbjct: 162 NGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYEEVAFYTVEYL 210
>gi|422304696|ref|ZP_16392037.1| GTPase family protein [Microcystis aeruginosa PCC 9806]
gi|389790101|emb|CCI13969.1| GTPase family protein [Microcystis aeruginosa PCC 9806]
Length = 279
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A R + + + LVD++LEVRDARIP +S HHP + R+L+L
Sbjct: 6 WYPGHIAKAERKLKEHLKLVDVVLEVRDARIPLAS-------HHPQVDDWIGNKPRLLIL 58
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDAS 139
N++D+ + ++W+T+F Q + N+ + VK +K + N ++
Sbjct: 59 NRLDMIPESAQQQWVTWFKSQGETVYFTNAKQGERVKAIIKAAEKIGDEINQKRQLRGML 118
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
V +++G PNVGKSAL N L +GR A + + G T+ + ++I+
Sbjct: 119 PRPVRAVVIGFPNVGKSALINRL--LGRKVVAS---------ARRAGVTRQLQWVRISD- 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LD PG++P + + + KLA+ IGD+ + +A F+ +L
Sbjct: 167 -TLELLDAPGVIPSRLDNQKDAVKLAICEDIGDAGYDNQRIAAAFVDLL 214
>gi|162447203|ref|YP_001620335.1| GTPase [Acholeplasma laidlawii PG-8A]
gi|161985310|gb|ABX80959.1| GTPase, YlqF-like protein [Acholeplasma laidlawii PG-8A]
Length = 286
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 120/235 (51%), Gaps = 30/235 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HM + R I +++ L+D++ + DAR+PFSS E ++ P +L+ NK
Sbjct: 6 WFPGHMFKSLREIKEKIKLMDMVFLLVDARLPFSSMNPEILKIVGDKP-----TLLLFNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDAS 139
+DLA +W+ F++ Q + +NS++ NV + + L+ + LR +
Sbjct: 61 IDLADRKTVDKWVEFYEAQGFYTLLINSNDGFNVNKIYSRSKEILEEKI--LRSKNKGMK 118
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
D V M+LGIPNVGKS L N L ++K V +PG TK +KI +
Sbjct: 119 FDRVRGMILGIPNVGKSTLINKL-------VSKKA----TNVGNKPGVTKSQQWIKI--N 165
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
P+ +LDTPG+L P+ D V LA+TGAI D + ++ Y +N+ EY
Sbjct: 166 PHFELLDTPGVLWPKFEDETVGFALAITGAIKDDTLPMNQVVIY---AINYLKEY 217
>gi|282901743|ref|ZP_06309658.1| GTP-binding protein [Cylindrospermopsis raciborskii CS-505]
gi|281193360|gb|EFA68342.1| GTP-binding protein [Cylindrospermopsis raciborskii CS-505]
Length = 296
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 113/230 (49%), Gaps = 27/230 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A + + +++ VD+ILEVRDARIP S+ HHP + R+LV+
Sbjct: 14 WYPGHIAKAEKNLKEQLKRVDVILEVRDARIPLST-------HHPQVKEWIGNKSRVLVI 66
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDAS 139
N++D+ P W + +Q + N+ + K Q L R+
Sbjct: 67 NRLDMILPQVKSIWSEWLKKQGEVPYFANAQQGQGITAIAKAAQIAGTELNERRKQRGML 126
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
V +++G PNVGKSAL N L +G+ R + +PG T+ + +KI+ H
Sbjct: 127 PRPVRAVVIGFPNVGKSALINRL--LGK---------RVVESAARPGVTRQLRWVKISEH 175
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ +LD PGI+P + D + KLA+ IG++ + +A F+ ++N
Sbjct: 176 --LELLDAPGIIPSRLEDQQAAVKLAICDDIGEASYDNQLIAAAFVDMVN 223
>gi|113970523|ref|YP_734316.1| ribosomal biogenesis GTPase [Shewanella sp. MR-4]
gi|114047758|ref|YP_738308.1| ribosomal biogenesis GTPase [Shewanella sp. MR-7]
gi|113885207|gb|ABI39259.1| GTP-binding [Shewanella sp. MR-4]
gi|113889200|gb|ABI43251.1| GTP-binding protein [Shewanella sp. MR-7]
Length = 313
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 125/247 (50%), Gaps = 31/247 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + I + MP VD+++EV DARIP+SSE +LR P I +LNK
Sbjct: 5 WYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVSKLRGDKPC-----IKLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKE-FLKFLQAHVRNLRKSDYDASSDT 142
DLA P +WI + +++ GV + ++ LK L R L S D +
Sbjct: 60 SDLADPDITAQWIEYLEREQ----GVKATAITTLQPGMLKMLPDLCRKLVPS-RDKTEKD 114
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS + N+L GR+ A +P TK +I I
Sbjct: 115 IRTMIMGIPNVGKSTIINTLA--GRVI---------AKTGNEPAVTKS--QQRINLRNGI 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKK--WAKF 260
+ DTPGIL P++ + +LA+TGAI D+ + +++A + G F Y K ++
Sbjct: 162 VLSDTPGILWPKVDNEASSYRLAVTGAIKDTAMEYEDVALFAAGY--FLKAYPKEICERY 219
Query: 261 SINQINK 267
+I+++ K
Sbjct: 220 NISELPK 226
>gi|403515130|ref|YP_006655950.1| GTP binding protein [Lactobacillus helveticus R0052]
gi|403080568|gb|AFR22146.1| GTP binding protein [Lactobacillus helveticus R0052]
Length = 283
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 117/241 (48%), Gaps = 26/241 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + D++ L+D+ +EV DARIP SS + L + P I++LNK
Sbjct: 6 WYPGHMNRARNQLEDKLGLIDVWVEVLDARIPESSRNPMIEDLVGNKP-----HIIILNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRK--SDYDASSD 141
DLA P K W ++S + N+++ + ++ K AS+
Sbjct: 61 ADLADPVLTKNWSAKLSGPGKYVLSIDSLHNTNMQKLISMVKKAAAEKTKKLEARGASNP 120
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
T+ + L GIPN GKS + N L +GR AE G +PG TK L+ +S N
Sbjct: 121 TIRIALAGIPNCGKSTIINRL--VGR-NVAEVGN--------KPGVTKGQRWLRTSS--N 167
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY-KKWAKF 260
I VLDTPGIL P+ D EV KLA GAI DS ++A Y L N Y K KF
Sbjct: 168 IQVLDTPGILWPKFSDQEVGYKLAAFGAIKDSVFHADDVALYVLE--NLRQHYLKDLTKF 225
Query: 261 S 261
S
Sbjct: 226 S 226
>gi|119775128|ref|YP_927868.1| ribosomal biogenesis GTPase [Shewanella amazonensis SB2B]
gi|119767628|gb|ABM00199.1| GTP-binding protein [Shewanella amazonensis SB2B]
Length = 314
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 118/232 (50%), Gaps = 28/232 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + IA+ MP VD+++EV DARIP+SSE +LR P I +LNK
Sbjct: 5 WYPGHMHKAQKEIAEAMPQVDLVIEVLDARIPYSSENPMVAKLRGDKPC-----IKLLNK 59
Query: 84 MDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + WI + +Q + V + ++K + L VR L + D +
Sbjct: 60 CDLADPAITEAWIAHLEKEQGVKAMAVTTLQPGHLKTVIPEL---VRKL-VPERDRADKD 115
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS + N+L GR+ A +P TK + + + I
Sbjct: 116 IRTMIMGIPNVGKSTIINTLA--GRVI---------AKTGNEPAVTKAQQRINLKN--GI 162
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+ DTPGIL P++ + +LA+TGAI D+ + +++A + F D Y
Sbjct: 163 VLSDTPGILWPKVDNEASSYRLAVTGAIKDTAMEYEDVALFAAAF--FRDAY 212
>gi|355677530|ref|ZP_09060433.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium citroniae
WAL-17108]
gi|354813095|gb|EHE97708.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium citroniae
WAL-17108]
Length = 282
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 113/227 (49%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A RA+ + + L+D+++E+ DAR+P SS + D L + R+++LNK
Sbjct: 5 WYPGHMTKAKRAMKEDIKLIDLVIELVDARVPLSSRNPDIDSL-----AAGKARMVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DLA +W +F+ + +++ NK +K+ +Q R+ + D +
Sbjct: 60 SDLADERLNAQWAAWFEAKGIHVVKIDARNKGTLKQVQGVVQQACRDKIERDRKRGILNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS NS G+ A K PG TK +++ +
Sbjct: 120 PIRTMVVGIPNVGKSTFINSFA--GKACAKTGNK---------PGVTKGNQWIRL--NKT 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P D V KLAL G+I D + ELA + IL
Sbjct: 167 LELLDTPGILWPRFDDQSVGLKLALIGSINDQILNKDELAGQCIRIL 213
>gi|380017946|ref|XP_003692903.1| PREDICTED: mitochondrial GTPase 1-like [Apis florea]
Length = 324
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 123/248 (49%), Gaps = 24/248 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM + + ++ VD I+EV DARIP S + N I +LNK+DL
Sbjct: 24 WFPGHMGKGLKQMRHQLKNVDCIIEVHDARIPISGHYADFNNVLT-GLKPHIFILNKIDL 82
Query: 87 ASPTQFKEWITFFDQQNCPS----FGVNSHNKDNVK-----EFLKFLQAHVRNLRKSDYD 137
S +FK+ I C + F + N NVK E + Q ++N + +
Sbjct: 83 -SDMRFKDSII-----ECLNKKGLFNILFTNFKNVKCEGVRELIPLAQKLIKNSNRYNRS 136
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKI 196
S + +M++GIPNVGKS+L N R+ + K V G T+ + + +KI
Sbjct: 137 EES-SFQMMIIGIPNVGKSSLIN------RLRSNILHKSNAVQVGGIAGITRSVSTRVKI 189
Query: 197 ASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKK 256
+ +PNIYVLDTPGIL P+I+D+ KLAL + D VG + LA + L LN + ++
Sbjct: 190 SENPNIYVLDTPGILIPKINDINTGLKLALASCMQDHLVGPELLADFLLFWLNKHERFEY 249
Query: 257 WAKFSINQ 264
K + +
Sbjct: 250 VQKLGLTK 257
>gi|91793658|ref|YP_563309.1| ribosomal biogenesis GTPase [Shewanella denitrificans OS217]
gi|91715660|gb|ABE55586.1| GTP-binding [Shewanella denitrificans OS217]
Length = 313
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 113/227 (49%), Gaps = 31/227 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + I + MP VD+++EV DARIP+SSE QLR P I +LNK
Sbjct: 5 WYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMIAQLRGDKPC-----IKLLNK 59
Query: 84 MDLASPTQFKEWITFFDQ-QNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P +WI + +Q Q + + + VK + V + D +
Sbjct: 60 ADLADPEITAQWIEYLEQEQGVKASAITTLQPGMVKRIPDICRKLVPH-----RDITEKD 114
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS + N+L GR+ A +P TK+ +I I
Sbjct: 115 IRTMIMGIPNVGKSTIINTLA--GRVI---------AKTGNEPAVTKN--QQRINLRNGI 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKEL----AQYFL 245
+ DTPGIL P++ + +LA+TGAI D+ + +++ A YFL
Sbjct: 162 VLSDTPGILWPKVDNEASSYRLAVTGAIKDTAMEYEDVALFAAAYFL 208
>gi|315652840|ref|ZP_07905814.1| ribosome biogenesis GTP-binding protein YlqF [Lachnoanaerobaculum
saburreum DSM 3986]
gi|315485042|gb|EFU75450.1| ribosome biogenesis GTP-binding protein YlqF [Lachnoanaerobaculum
saburreum DSM 3986]
Length = 281
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 106/217 (48%), Gaps = 17/217 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A RA++D + LVDII+E+ DAR P + ++ S RI++LNK DL
Sbjct: 5 WYPGHMIKAKRAMSDVIKLVDIIIEMTDARAPEAGRNPEIMELGADKS--RIIILNKADL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD--ASSDTVT 144
A+ W +F+ +Q ++S + V +K + + R+ D + V
Sbjct: 63 ANELANNRWASFYKEQGYECMFMDSRKNNGVGVLIKAIDNVSKKKRERDAKRGIKNRPVR 122
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M+ GIPNVGKS L NS+ GR A K PG TK +K+ I +
Sbjct: 123 AMVAGIPNVGKSTLINSVS--GRAMAKTGNK---------PGVTKGNQWIKLKGQ--IEL 169
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELA 241
LDTPGIL P+ D V +A G+I D + +EL
Sbjct: 170 LDTPGILWPKFEDERVGEMIAFIGSINDMIIDIRELG 206
>gi|256843159|ref|ZP_05548647.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
crispatus 125-2-CHN]
gi|256614579|gb|EEU19780.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
crispatus 125-2-CHN]
Length = 279
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 122/246 (49%), Gaps = 25/246 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + D++ L+D+++EV DARIP +S + L + P I++LNK
Sbjct: 6 WYPGHMNKARNQLEDKLGLIDVLVEVLDARIPQASRNPMIEGLVGNKP-----HIIILNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
DLA P K W N ++S + N+++ + ++ + AS+
Sbjct: 61 ADLADPVLTKAWAAELAGDNKYVLALDSLHNTNMQKLVSLVKKAAAAKTEKLEARGASNP 120
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
T+ + L GIPN GKS + N L +G+ A V +PG TK LK ++ N
Sbjct: 121 TIRIALAGIPNCGKSTVINRL--VGQ---------NVAEVGNKPGVTKGQRWLK--TNAN 167
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKWAK 259
I VLDTPGIL P+ D EV KLA GAI DS ++A + L L ++ + K++K
Sbjct: 168 IQVLDTPGILWPKFSDQEVGYKLAAFGAIKDSVFHADDVALFVLKNLREFYAKDLLKFSK 227
Query: 260 FSINQI 265
QI
Sbjct: 228 LPEQQI 233
>gi|227529207|ref|ZP_03959256.1| GTP-binding protein [Lactobacillus vaginalis ATCC 49540]
gi|227350882|gb|EEJ41173.1| GTP-binding protein [Lactobacillus vaginalis ATCC 49540]
Length = 290
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 113/231 (48%), Gaps = 31/231 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R I ++MPLVDI+ E+ DAR+P+SS+ ++ R+L++ K DL
Sbjct: 6 WFPGHMAKALRQIREQMPLVDIVFELVDARVPYSSQNPEI--ALAAGDKPRLLIMTKTDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKD-------NVKEFL--KFLQAHVRNLRKSDYD 137
A + EW+T+F + N P ++S ++ KE L K + + L+K
Sbjct: 64 ADSKRLGEWLTYFKEHNQPVLALDSRQQNVSKIVTAKSKEILHDKLAEEAAKGLKKR--- 120
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ M +G+PNVGKS L N L K A +PG T L+
Sbjct: 121 ----PIRAMCVGVPNVGKSTLLNHLV-----------KKNVAVTGNRPGVTTGQQWLR-- 163
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
S + +LDTPG+L + + + LAL+GAI DS ++A + L L
Sbjct: 164 SSAELELLDTPGVLWHKFASQKQGTMLALSGAIKDSLYAKDDVALFALDYL 214
>gi|326791385|ref|YP_004309206.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
lentocellum DSM 5427]
gi|326542149|gb|ADZ84008.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
lentocellum DSM 5427]
Length = 284
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 110/224 (49%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM R I + + LVDI++E+ DAR P+S+ + D+L + RI++LNK
Sbjct: 5 WYPGHMTKTKRLIEENIKLVDIVIELLDARAPYSTKNPDIDKLAQN-----KMRIIILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASS--D 141
DLA + KEWI ++ N + + +KE K + ++ + D
Sbjct: 60 ADLADESITKEWIKWYSAHNVKVVPIIATTGKGIKEVTKIAEDLLKEKIERDRARGRIYR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS NSL +G+ TA +PG T+ +KI
Sbjct: 120 PIRAMIVGIPNVGKSTFINSL--VGKGTAK---------TGDKPGVTRGKQWVKIKK--G 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LD PGIL P+ D V LA G+I D+ + ++LA + L
Sbjct: 167 FELLDMPGILWPKFEDQMVARHLAYIGSINDNILDNRQLAIHLL 210
>gi|399889398|ref|ZP_10775275.1| GTPase YlqF [Clostridium arbusti SL206]
Length = 284
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 120/240 (50%), Gaps = 37/240 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA R I + + LVD ++E+RD+RI SS E + + P RI++LNK
Sbjct: 7 WFPGHMAKTRREIKENLKLVDAVIEIRDSRIVQSSANPEINTICKDKP-----RIILLNK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
DL+ K WI + N + +NS N LK ++ + NL K D
Sbjct: 62 CDLSEEKVTKAWINTLSKDNVRALAINSLNGIG----LKNIKGELDNLLKEKIDRLKQKG 117
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ + VM++GIPNVGKS+ N ++ + TAA+ G +PG T+ +K
Sbjct: 118 VMNVIIRVMVVGIPNVGKSSFIN---KMAKNTAAKIG--------DKPGVTRTKQWIK-- 164
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
+ I ++DTPG+L P+ + +V LA TGAI D + +ELA LN + +K+
Sbjct: 165 TKIGIELMDTPGVLWPKFEEKKVGLNLAFTGAIKDEIMDVEELA------LNLVERLQKY 218
>gi|355562898|gb|EHH19492.1| hypothetical protein EGK_20212, partial [Macaca mulatta]
gi|355783223|gb|EHH65144.1| hypothetical protein EGM_18499, partial [Macaca fascicularis]
Length = 297
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 113/215 (52%), Gaps = 23/215 (10%)
Query: 43 MPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFF 99
+ LVD I+EV DARIP S F + P +LVLNKMDLA T+ ++ +
Sbjct: 9 LKLVDCIIEVHDARIPLSGRNPLFQETLGLKP-----HLLVLNKMDLADLTEQQKIMQRL 63
Query: 100 DQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSD---YDASSDTVTVMLLGIPNVGK 155
+ + + + KD NVK+ + V L S + + +M++G+PNVGK
Sbjct: 64 EGEGLKNVIFTNCLKDENVKQIIPM----VTELMGSSPRYHRGENLEYCIMVIGVPNVGK 119
Query: 156 SALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYVLDTPGILPPE 214
S+L NSL R KGK A V +PG T+ + S ++++ P +++LDTPG+L P
Sbjct: 120 SSLINSL----RRQHLRKGK--AARVGGEPGITRAVMSRIQVSERPLMFLLDTPGVLAPR 173
Query: 215 IHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
I VE KLAL G + D VG + +A Y L LN
Sbjct: 174 IESVETGLKLALCGTVLDHLVGEETMADYLLFTLN 208
>gi|149190206|ref|ZP_01868481.1| ribosomal biogenesis GTPase [Vibrio shilonii AK1]
gi|148835953|gb|EDL52915.1| ribosomal biogenesis GTPase [Vibrio shilonii AK1]
Length = 312
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 110/224 (49%), Gaps = 33/224 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + I + +P +D+I+EV DARIPFSSE QLR P + VLNK
Sbjct: 5 WFPGHMHKARKEIEEVIPQIDVIIEVLDARIPFSSENPMISQLRGDKPV-----VKVLNK 59
Query: 84 MDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKF---LQAHVRNLRKSDYDAS 139
DLA P + + WI + +Q + + + N V + L+ L H + K+
Sbjct: 60 RDLADPEKTELWIEHLEKEQGVKAMAITTSNSQEVHKILELCRKLAPHREEIGKN----- 114
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS + N+L GR A QP T+ +I
Sbjct: 115 ---IRTMIMGIPNVGKSTIINTL--AGRTI---------AVTGNQPAVTR--RQQRINLQ 158
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
I + DTPGIL P++ + +LA TGA+ D+ + E+A Y
Sbjct: 159 NGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAIEYDEVAFY 202
>gi|347750516|ref|YP_004858081.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus coagulans
36D1]
gi|347583034|gb|AEO99300.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus coagulans
36D1]
Length = 279
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 111/230 (48%), Gaps = 27/230 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ LVDI+ E+ DARIP SS D+L P RI +LNK
Sbjct: 6 WFPGHMAKARREVTEKLKLVDIVFELLDARIPVSSANPMLDELIQQKP-----RIKLLNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKF----LQAHVRNLRKSDYDAS 139
D+A P W+ N +++ + + + +K L+ +R
Sbjct: 61 ADMADPAATARWLEKLSGGNTHVLAIDAQSGKGLDKMVKLAEQILEPKWERMRAKGIRPR 120
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ + M++GIPNVGKS L N L GK A PG TK +K+
Sbjct: 121 A--IRAMIVGIPNVGKSTLINRLA----------GK-NIAKTGNTPGVTKAQAWIKVGK- 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ +LDTPGIL P+ D E KLALTGAI D+ + ++++ + L L
Sbjct: 167 -TMELLDTPGILWPKFEDKETGYKLALTGAIKDTILNLQDVSVFGLRFLE 215
>gi|408789568|ref|ZP_11201223.1| 50S ribosomal subunit maturation GTPase RbgA ( YlqF) [Lactobacillus
florum 2F]
gi|408521174|gb|EKK21160.1| 50S ribosomal subunit maturation GTPase RbgA ( YlqF) [Lactobacillus
florum 2F]
Length = 289
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 110/210 (52%), Gaps = 25/210 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + + +VD++ E+ DARIP SS E ++ + P R+L+L K
Sbjct: 7 WFPGHMAKAIRQFEENIKVVDVVFEILDARIPISSINPEITRISRNKP-----RLLILTK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHN---KDNVKEFLKFLQAHVRNLRKSDYDASS 140
DLA P K+W+ +F +Q + +++ + V++ K L A+ + +++ S
Sbjct: 62 ADLADPQLTKQWLLWFQKQGQAAITIDAKTPGVQKKVEQAAKRLLANKLSQQQAK-GFSP 120
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ + +G+PNVGKS L N L I R R A V +PG TK L H
Sbjct: 121 QKIKAICVGVPNVGKSTLLNQL--INR---------RSAPVGNRPGVTKGQQWLTGNGH- 168
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAI 230
+ +LDTPGIL P+ D V KLALTGAI
Sbjct: 169 -LELLDTPGILWPKFADQRVAEKLALTGAI 197
>gi|350533429|ref|ZP_08912370.1| GTPase YlqF [Vibrio rotiferianus DAT722]
Length = 314
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 122/243 (50%), Gaps = 27/243 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + IA+ +P +D+I+EV DARIPFSSE +L+ P + VLNK
Sbjct: 8 WFPGHMHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMIAELKGDKPV-----VKVLNK 62
Query: 84 MDLASPTQFKEWITFFDQQ-NCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + WI F+++ N + + + + V++ ++ VR L + +
Sbjct: 63 RDLADPELTQVWIDHFEKEHNVKAIAITTSQQSEVQKIMEL----VRKLAPHREEIGKNI 118
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
T M++GIPNVGKS + N+L GR A QP T+ +I I
Sbjct: 119 RT-MIMGIPNVGKSTIINTLA--GRTI---------AVTGNQPAVTR--RQQRINLQNGI 164
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262
+ DTPGIL P++ + +LA TGA+ D+ + E+A Y + L K ++ I
Sbjct: 165 VLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAAHYPEKLKERYQI 224
Query: 263 NQI 265
+++
Sbjct: 225 DEL 227
>gi|282897399|ref|ZP_06305401.1| GTP-binding protein [Raphidiopsis brookii D9]
gi|281198051|gb|EFA72945.1| GTP-binding protein [Raphidiopsis brookii D9]
Length = 296
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 113/230 (49%), Gaps = 27/230 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A + + +++ VD++LEVRDARIP S+ HHP + R+LV+
Sbjct: 14 WYPGHIAKAEKNLKEQLKRVDVVLEVRDARIPLST-------HHPQVKEWIGNKSRVLVI 66
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDAS 139
N++D+ P W + +Q + N+ + K Q L R+
Sbjct: 67 NRLDMILPQVKSIWSEWLKKQGEVPYFANAQQGQGITAIAKAAQIAGTELNERRKQRGML 126
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
V +++G PNVGKSAL N L +G+ R + +PG T+ + +KI+ H
Sbjct: 127 PRPVRAVVIGFPNVGKSALINRL--LGK---------RVVESAARPGVTRQLRWVKISEH 175
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+ +LD PGI+P + D + KLA+ IG++ + +A F+ ++N
Sbjct: 176 --LELLDAPGIIPSRLEDQQAAVKLAICDDIGEASYDNQLIAAAFVDMVN 223
>gi|359403592|ref|ZP_09196496.1| GTP-binding protein [Spiroplasma melliferum KC3]
gi|438119591|ref|ZP_20871711.1| ribosomal biogenesis GTPase [Spiroplasma melliferum IPMB4A]
gi|358832823|gb|EHK51927.1| GTP-binding protein [Spiroplasma melliferum KC3]
gi|434155339|gb|ELL44292.1| ribosomal biogenesis GTPase [Spiroplasma melliferum IPMB4A]
Length = 296
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 27/222 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A + I ++ L+D+++E+ D+RIPFSS D LR P ++++LNK
Sbjct: 7 WFPGHMAKAIKQIDEQSKLIDLVIEIVDSRIPFSSSNPLVDNLRGLKP-----KLIILNK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV---RNLRKSDYDASS 140
DLA P K W+ ++ Q ++S + + K ++ + HV + R + S
Sbjct: 62 KDLADPVVIKAWLEYYQSQQIAVLPLDSKHGNITKLIIEKI-YHVLSGKIERDQNRGIKS 120
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHAT-VSPQPGETKDIYSLKIASH 199
+ VM++GIPNVGKS N+L + R++T V +PG TK LK+
Sbjct: 121 PKLKVMVIGIPNVGKSTFINALIK------------RNSTRVGNKPGVTKGQQWLKLNHQ 168
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELA 241
I ++DTPGIL P+I+D +V LA T +I + + +E+
Sbjct: 169 --IDLVDTPGILWPKINDPQVAINLAFTRSIKEDILPKEEIC 208
>gi|390440761|ref|ZP_10228966.1| GTPase family protein [Microcystis sp. T1-4]
gi|389835929|emb|CCI33092.1| GTPase family protein [Microcystis sp. T1-4]
Length = 279
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 116/229 (50%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A R + + + LVD++LEVRDARIP +S HHP + R+L+L
Sbjct: 6 WYPGHIAKAERKLKEHLKLVDVVLEVRDARIPLAS-------HHPQVDDWIGNKPRLLIL 58
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDAS 139
N++D+ + ++W+T+F Q + N+ + VK +K + N ++
Sbjct: 59 NRLDMIPESAQQQWVTWFKSQGETVYFTNAKQGERVKAIIKAAEKIGDAINQKRQLRGML 118
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
V +++G PNVGKSAL N L +GR A + + G T+ + ++I+
Sbjct: 119 PRPVRAVVIGFPNVGKSALINRL--LGRKVVAS---------ARRAGVTRQLQWVRISD- 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LD PG++P + + + KLA+ IGD+ + + F+ +L
Sbjct: 167 -TLELLDAPGVIPSRLDNQKDAVKLAICEDIGDAGYDNQRIGAAFVDLL 214
>gi|347532233|ref|YP_004838996.1| ribosomal biogenesis GTPase [Roseburia hominis A2-183]
gi|345502381|gb|AEN97064.1| ribosomal biogenesis GTPase [Roseburia hominis A2-183]
Length = 285
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 115/228 (50%), Gaps = 25/228 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQL-RNHHPFSSSRRILVLN 82
WY HM A R + + + L+D+++E+ DARIP SS + D+L RN R++++N
Sbjct: 5 WYPGHMTKAKRQMQEDIKLIDLVIELVDARIPLSSRNPDIDELGRNKA------RLILMN 58
Query: 83 KMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--S 140
K DLA K W +F ++ ++S N++ +K+ + + + D +
Sbjct: 59 KSDLADEEAGKLWSAYFQKKGYYVVSLDSRNRNGMKQVTAVVMEACKEKIERDRKRGIMN 118
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
V M++GIPNVGKS NS GK A +PG TK +++ +
Sbjct: 119 RPVRAMVVGIPNVGKSTFINSYA----------GKA-CAKTGNKPGVTKGKQWIRL--NK 165
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
N+ +LDTPGIL P+ D V KLAL GAI D + EL+ + +L
Sbjct: 166 NVELLDTPGILWPKFEDQTVGLKLALIGAIKDEILNIDELSLELIKVL 213
>gi|427737499|ref|YP_007057043.1| ribosome biogenesis GTP-binding protein YlqF [Rivularia sp. PCC
7116]
gi|427372540|gb|AFY56496.1| ribosome biogenesis GTP-binding protein YlqF [Rivularia sp. PCC
7116]
Length = 296
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 117/234 (50%), Gaps = 27/234 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A R + +++ LVD++LEVRDARIP S+ HHP R+L++
Sbjct: 14 WYPGHIAKAERQLKEQLKLVDVVLEVRDARIPSST-------HHPQVSEWIGDKARLLII 66
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQA--HVRNLRKSDYDAS 139
N++D+ S + W +F N N+ V K Q+ N R+ + +
Sbjct: 67 NRLDMISSEARELWTDYFRANNEVPIFTNAKQGKGVNGVAKAAQSAGSQVNERRKEREML 126
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ +++G PNVGKSAL N L +G+ R + +PG T+ + ++I+
Sbjct: 127 PRPIRAVVIGFPNVGKSALINRL--LGK---------RVVQSAARPGVTRSLRWVRISKE 175
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDE 253
N+ LD PG++P ++ + E KLA+ IG++ +++A F+ I+ E
Sbjct: 176 LNL--LDAPGVIPLKLENQEAALKLAICDDIGEASYDNQKVAAAFVDIVGEMQE 227
>gi|110004282|emb|CAK98620.1| putative gtp binding protein [Spiroplasma citri]
Length = 296
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 27/222 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A + I ++ L+D+++E+ D+RIPFSS D LR P ++++LNK
Sbjct: 7 WFPGHMAKAIKQIDEQSKLIDLVIEIVDSRIPFSSSNPLVDNLRGLKP-----KLIILNK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV---RNLRKSDYDASS 140
DLA P K W+ ++ Q ++S + + K ++ + HV + R + S
Sbjct: 62 KDLADPVVIKAWLEYYQSQQIAVLPLDSKHGNITKLIIEKI-YHVLSGKIERDQNRGIKS 120
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHAT-VSPQPGETKDIYSLKIASH 199
+ VM++GIPNVGKS N+L + R++T V +PG TK LK+
Sbjct: 121 PKLKVMVIGIPNVGKSTFINALIK------------RNSTRVGNKPGVTKGQQWLKLNHQ 168
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELA 241
I ++DTPGIL P+I+D +V LA T +I + + +E+
Sbjct: 169 --IDLVDTPGILWPKINDPQVAINLAFTRSIKEDILPKEEIC 208
>gi|37676238|ref|NP_936634.1| ribosomal biogenesis GTPase [Vibrio vulnificus YJ016]
gi|37200779|dbj|BAC96604.1| predicted GTPase [Vibrio vulnificus YJ016]
Length = 339
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 121/256 (47%), Gaps = 36/256 (14%)
Query: 6 SSLFKLAREIGTAVSQKKGG---------GWYGPHMAAATRAIADRMPLVDIILEVRDAR 56
S LF+ R + ++KG W+ HM A + IA+ +P +D+I+EV DAR
Sbjct: 3 SQLFRQIRYVFRQTKKQKGQFIQMVNNSIQWFPGHMHKAQKEIAEAIPQIDVIIEVLDAR 62
Query: 57 IPFSSE---FDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD-QQNCPSFGVNSH 112
IPFSSE ++R P + VLNK DLA P + WI + +QN + + +
Sbjct: 63 IPFSSENPLISKIRGEKPV-----VKVLNKRDLADPELTELWIEHLEKEQNVKAMAITTS 117
Query: 113 NKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAE 172
V + L+ R L + + + M++GIPNVGKS + N+L GR
Sbjct: 118 QTQEVHKILEL----CRKLAPHREEVGKN-IRTMIMGIPNVGKSTIINTL--AGRAI--- 167
Query: 173 KGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGD 232
A QP T+ +I I + DTPGIL P++ + +LA TGA+ D
Sbjct: 168 ------AQTGNQPAVTR--RQQRINLQNGIVLSDTPGILWPKVENPHSGFRLAATGAVKD 219
Query: 233 SFVGGKELAQYFLGIL 248
+ + E+A Y + L
Sbjct: 220 TAMEYDEVAFYTVEYL 235
>gi|153832059|ref|ZP_01984726.1| GTP-binding protein [Vibrio harveyi HY01]
gi|156977301|ref|YP_001448207.1| ribosomal biogenesis GTPase [Vibrio harveyi ATCC BAA-1116]
gi|148871674|gb|EDL70515.1| GTP-binding protein [Vibrio harveyi HY01]
gi|156528895|gb|ABU73980.1| hypothetical protein VIBHAR_06087 [Vibrio harveyi ATCC BAA-1116]
Length = 314
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 122/243 (50%), Gaps = 27/243 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + IA+ +P +D+I+EV DARIPFSSE +L+ P + VLNK
Sbjct: 8 WFPGHMHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMIAELKGDKPV-----VKVLNK 62
Query: 84 MDLASPTQFKEWITFFDQQ-NCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + WI F+++ N + + + + V++ ++ VR L + +
Sbjct: 63 RDLADPELTQVWIDHFEKEHNVKAIAITTSQQSEVQKIMEL----VRKLAPHREEIGKNI 118
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
T M++GIPNVGKS + N+L GR A QP T+ +I I
Sbjct: 119 RT-MIMGIPNVGKSTIINALA--GRTI---------AVTGNQPAVTR--RQQRINLQNGI 164
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262
+ DTPGIL P++ + +LA TGA+ D+ + E+A Y + L K ++ I
Sbjct: 165 VLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAAHYPEKLKERYQI 224
Query: 263 NQI 265
+++
Sbjct: 225 DEL 227
>gi|444428555|ref|ZP_21223876.1| GTPase YlqF [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|444238216|gb|ELU49835.1| GTPase YlqF [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 311
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 122/243 (50%), Gaps = 27/243 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + IA+ +P +D+I+EV DARIPFSSE +L+ P + VLNK
Sbjct: 5 WFPGHMHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMIAELKGDKPV-----VKVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQ-NCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + WI F+++ N + + + + V++ ++ VR L + +
Sbjct: 60 RDLADPELTQVWIDHFEKEHNVKAIAITTSQQSEVQKIMEL----VRKLAPHREEIGKNI 115
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
T M++GIPNVGKS + N+L GR A QP T+ +I I
Sbjct: 116 RT-MIMGIPNVGKSTIINALA--GRTI---------AVTGNQPAVTR--RQQRINLQNGI 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262
+ DTPGIL P++ + +LA TGA+ D+ + E+A Y + L K ++ I
Sbjct: 162 VLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAAHYPKKLKERYQI 221
Query: 263 NQI 265
+++
Sbjct: 222 DEL 224
>gi|452825102|gb|EME32101.1| GTP-binding family protein isoform 1 [Galdieria sulphuraria]
Length = 338
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 108/221 (48%), Gaps = 17/221 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H+A A R + D++ LVD++LEVRDARIP S+E +L++ +R++VLN+ D+
Sbjct: 57 WYPGHIAKAERVLKDKLRLVDVVLEVRDARIPKSTEHPELQSW--LGEKKRLVVLNRRDM 114
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFL--QAHVRNLRKSDYDASSDTVT 144
WI QQ F N+ + ++ K L N ++ +V
Sbjct: 115 VPQEALSVWIKTIKQQGFEVFDTNAKLGNGIQRLRKALIFCGKAINEKRRVKGLLPRSVH 174
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++G PNVGKSAL N L + R A + + PG T+ ++++ I +
Sbjct: 175 CMIVGYPNVGKSALINRL--VNRAIAKSQNR---------PGVTRTFQWIQVSDQ--IQL 221
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
LD+PGI+PP++ KLA IG + +A L
Sbjct: 222 LDSPGIIPPKLVSQSSAEKLAFCNDIGSGSYDNQVVASALL 262
>gi|300854481|ref|YP_003779465.1| GTP-binding protein [Clostridium ljungdahlii DSM 13528]
gi|300434596|gb|ADK14363.1| predicted GTP-binding protein [Clostridium ljungdahlii DSM 13528]
Length = 284
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 113/228 (49%), Gaps = 31/228 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA R + + LVD ++E+RDARI SS E D + P RI++LNK
Sbjct: 5 WFPGHMAKTKREMKQNLKLVDAVIEIRDARIIRSSKNPEVDDICGSKP-----RIILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSD-- 141
DL+ + K+WI + +N + VNS N + +K ++ + L K +D ++
Sbjct: 60 NDLSEDSVTKKWIKYLSNKNIKALAVNS----NTGQGIKSIKPLLDELLKEKHDRMNNKG 115
Query: 142 ----TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
T VM++GIPNVGKS+ N + K A +PG T+ +K
Sbjct: 116 ILGITDRVMVVGIPNVGKSSFINKM-----------AKNSIAKTGDKPGVTRSKQWIK-- 162
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ I ++DTPGIL P++ E LA TGAI D + +ELA L
Sbjct: 163 TKLGIELMDTPGILWPKLESQETQLHLAFTGAIKDEIMDIEELALSLL 210
>gi|187918499|ref|YP_001884062.1| ribosomal biogenesis GTPase [Borrelia hermsii DAH]
gi|119861347|gb|AAX17142.1| GTP-binding protein [Borrelia hermsii DAH]
Length = 283
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 120/237 (50%), Gaps = 16/237 (6%)
Query: 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMD 85
W+ HM A I + +I+LE+ DAR P SS+ S+ +I++LNK D
Sbjct: 6 NWFPGHMKRALDLIQANLKRTNIVLEILDARAPMSSKNPLTEKIIKNSNKDKIILLNKSD 65
Query: 86 LASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTV 145
L + +W +F+ N + K K+ + ++ + N++K ++ + V
Sbjct: 66 LVKTREILKWREYFETLGNNVLITNIYKKGMKKQIIDNIKK-IANVKK--IKTYTEKIKV 122
Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVL 205
+++G+PNVGKS++ N L +G+ + +V+ +PG T++I LK+ NI+
Sbjct: 123 LVIGVPNVGKSSIINLL--VGK---------KSTSVANKPGHTRNIQILKVNEEINIF-- 169
Query: 206 DTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262
D PGIL + D E+ KLA+ I + + ELA Y L ++ +++ K K+SI
Sbjct: 170 DMPGILWHNLEDQEIAKKLAILDMIKNEIIDNTELALYLLKEMHINNKNKLLNKYSI 226
>gi|333985347|ref|YP_004514557.1| ribosome biogenesis GTP-binding protein YlqF [Methylomonas
methanica MC09]
gi|333809388|gb|AEG02058.1| ribosome biogenesis GTP-binding protein YlqF [Methylomonas
methanica MC09]
Length = 302
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 116/226 (51%), Gaps = 27/226 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A++ I + +P +D+++E+ DARIPFSS+ +LR P I VL+K
Sbjct: 6 WYPGHMHKASKEIKETLPNIDLLIEILDARIPFSSQNPMLAELRGDKP-----TIRVLSK 60
Query: 84 MDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
+DLA P ++W T + +Q + V + + D +K+ + + + S+
Sbjct: 61 IDLADPELTRQWQTHLELEQGVKTLAVTTQHPDKIKQIIDLCGKML-----PEKSESNKV 115
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS + N L GR T A+ G +P TK +I NI
Sbjct: 116 IRTMIMGIPNVGKSTIINVLA--GR-TIAKTGN--------EPAVTK--MQQRINLKNNI 162
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ DTPG+L P + + +LA+TGAI D+ ++A + L L
Sbjct: 163 VLSDTPGVLWPNVENRNSGYRLAVTGAIKDTAFQHDDIALFALDYL 208
>gi|302847670|ref|XP_002955369.1| hypothetical protein VOLCADRAFT_121416 [Volvox carteri f.
nagariensis]
gi|300259441|gb|EFJ43669.1| hypothetical protein VOLCADRAFT_121416 [Volvox carteri f.
nagariensis]
Length = 434
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 108/222 (48%), Gaps = 19/222 (8%)
Query: 32 MAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ 91
MA A + + R+ ++D+++EVRDAR+P SS + P RR++VLNK+DLA T
Sbjct: 1 MAKALKLMEQRIKMIDVLVEVRDARLPLSSANPDIARLAP--RKRRLIVLNKIDLADHTA 58
Query: 92 FKEWITFFDQQN---CPSFGVNSHNKDNVKE-FLKFLQAHVRNLRKSDYDASS------- 140
K T Q P + V + L +LQ A S
Sbjct: 59 TKAACTLLQSQGHVVVPCVATREGSAGRVLDAVLDWLQTQYSPACPPSASAPSSSSSSAS 118
Query: 141 --DTVTVMLLGIPNVGKSALANSLHQIGR---ITAAEKGKLRHATVSPQPGETKDIYSLK 195
D +M+ G PN GKSAL N+L + + + ++ R A P PG T+ + K
Sbjct: 119 HPDLSLMMVAGAPNTGKSALINALKRAAQKEGLLEGDQAFQRTARSGPLPGVTRQLGGFK 178
Query: 196 IASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGG 237
+ P +YVLDTPG+LPP + D V +LALTG + + VGG
Sbjct: 179 VCRSPLLYVLDTPGVLPPALPDEGVAVRLALTGLMPGA-VGG 219
>gi|281491814|ref|YP_003353794.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. lactis
KF147]
gi|281375528|gb|ADA65038.1| Ribosomal biogenesis GTPase [Lactococcus lactis subsp. lactis
KF147]
Length = 282
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 110/228 (48%), Gaps = 27/228 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM+ A R + + + VD ++E+ DAR+P SS Q+ P RI+ LNK
Sbjct: 5 WFPGHMSKARRQVQENLKYVDFVIELVDARLPISSRNPMLGQIIGDKP-----RIIALNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD--ASSD 141
DLA +WI +FD+Q + +NS + K + + + D + +
Sbjct: 60 ADLADSNAVAQWIEYFDEQGFITLAINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHT 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
T+ M++GIPN GKS L N L GK + A +PG TK I ++
Sbjct: 120 TLRTMIIGIPNAGKSTLMNRLA----------GK-KVAVTGNRPGVTKG--QQWIRTNKE 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELA----QYFL 245
+ +LDTPGIL P+ D V KLALTGAI D + E+ YFL
Sbjct: 167 LELLDTPGILWPKFEDQLVGLKLALTGAIKDDLLPMDEVTIFGLNYFL 214
>gi|410658771|ref|YP_006911142.1| 50S ribosomal subunit maturation GTPase RbgA [Dehalobacter sp. DCA]
gi|410661761|ref|YP_006914132.1| 50S ribosomal subunit maturation GTPase RbgA [Dehalobacter sp. CF]
gi|409021126|gb|AFV03157.1| 50S ribosomal subunit maturation GTPase RbgA [Dehalobacter sp. DCA]
gi|409024117|gb|AFV06147.1| 50S ribosomal subunit maturation GTPase RbgA [Dehalobacter sp. CF]
Length = 273
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 118/239 (49%), Gaps = 20/239 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A R + +++ VDI++E+ DAR+P SS L+ +L + DL
Sbjct: 5 WYPGHMTRAKRKLEEQLAWVDIVMELGDARLPLSSRNPLLKQLLGNKLRLLLLNKS--DL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRK--SDYDASSDTVT 144
A + +W+ ++ P ++S VK+ + L+ + + R+ + +
Sbjct: 63 ADKKRIDQWLVKLGKEG-PVLAISSMTSIGVKKIVPLLEELMTDKRERLAARGVRGRPIR 121
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
VM++GIPN+GKS L N L T + K +PG T+ ++I H + +
Sbjct: 122 VMVVGIPNIGKSTLINQL------TGGSQAK-----TGNKPGVTRGNQWIRI--HDKVEL 168
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKKWAKFS 261
LDTPG+L P+ D EV KLA+TGA+ D +ELAQ+ L L N+ E + + K
Sbjct: 169 LDTPGMLWPKFDDPEVGRKLAVTGAVRDEVFDQEELAQWLLAWLKQNYPQELQSFYKLE 227
>gi|221485677|gb|EEE23958.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 459
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 109/233 (46%), Gaps = 17/233 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM AT AI + VD ++EVRDAR P +S L +R++VLNK DL
Sbjct: 127 WFPAHMNRATVAIEKNLKHVDCVVEVRDARAPLTSGNSFLTERLASRGVKRLVVLNKADL 186
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVM 146
+ P + V + + F HV+ K+ V ++
Sbjct: 187 VHKRDGLRAQAVLEDAGLPCLLTCAPELKRVSKVVDFALEHVQPKFKTI------GVWML 240
Query: 147 LLGIPNVGKSALANSLHQIGRITAAEKG----------KLRHATVSPQPGETKDIYSLKI 196
L+G+PN GKS+L N++ ++ + A+ G K A PG TKD+ + +I
Sbjct: 241 LVGLPNTGKSSLLNAMKRLA-VNASRYGSPSNKLVEGVKRTRARAGKAPGLTKDVSAFQI 299
Query: 197 ASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
++ P ++ DTPGI+ P++ D EV KLA G I D G +A Y L LN
Sbjct: 300 SNKPRLFCYDTPGIMLPKMKDAEVNLKLAALGCIDDHRAGEMYVADYILYHLN 352
>gi|229829014|ref|ZP_04455083.1| hypothetical protein GCWU000342_01099 [Shuttleworthia satelles DSM
14600]
gi|229792177|gb|EEP28291.1| hypothetical protein GCWU000342_01099 [Shuttleworthia satelles DSM
14600]
Length = 281
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 118/235 (50%), Gaps = 32/235 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HM A R + + + L+D+++E+ DARIP +S E DQL R+++LNK
Sbjct: 5 WFPGHMTKAKRQMQEDIKLIDLVIELLDARIPLASRNPEIDQLARDKA-----RMILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFL-----QAHVRNLRKSDYDA 138
DL+ P W +F++Q ++S + K K + + R+LR+
Sbjct: 60 ADLSDPKMTSRWKEYFERQGMTVLALDSRSASLRKPMQKAIMDATEKKRARDLRRG---I 116
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
+ V M+ GIPNVGKS L NSL GR AA G +PG TK + +
Sbjct: 117 KNRPVRAMIAGIPNVGKSTLINSLA--GR-AAARTGN--------KPGVTKGKQWIHL-- 163
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDE 253
NI +LDTPGIL P+ D E LA+ GAI D + ++L+ L +++F E
Sbjct: 164 RDNIDLLDTPGILWPKFEDQETGIHLAMIGAISDHVLQVEDLS---LKVIHFLRE 215
>gi|225019935|ref|ZP_03709127.1| hypothetical protein CLOSTMETH_03889 [Clostridium methylpentosum
DSM 5476]
gi|224947299|gb|EEG28508.1| hypothetical protein CLOSTMETH_03889 [Clostridium methylpentosum
DSM 5476]
Length = 356
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 121/261 (46%), Gaps = 36/261 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM R I +PLVD+++E+ DARIP SS D+L P RI++LNK
Sbjct: 70 WFPGHMKKTERMIEKNLPLVDVVVEIIDARIPASSRNPVLDKLIQGKP-----RIVLLNK 124
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
D+A + W+ +F + ++ N+K+ ++ + L +++ S
Sbjct: 125 CDVADLNFTRRWVEYFQSVGIAALAIDCQTGKNLKQVQPLIRQVLVELIQKRASKGMSGR 184
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M++GIPNVGKS N + GK A V +PG T+ + I + +
Sbjct: 185 IVRAMVVGIPNVGKSTFINKMA---------GGK--RAKVEDRPGVTRGKQWVHIDN--D 231
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
I +LD PG+L P+ D +V LA TGA+ D V + LA L L S+ Y K
Sbjct: 232 IDLLDMPGVLCPKFEDPQVGVHLAWTGAVKDDVVDVELLAMNLLEYL--SENYPKL---- 285
Query: 262 INQINKPLTLHHKADQSSGSE 282
LT K +SG E
Sbjct: 286 -------LTERFKLGDTSGME 299
>gi|388600804|ref|ZP_10159200.1| GTPase YlqF [Vibrio campbellii DS40M4]
Length = 311
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 122/243 (50%), Gaps = 27/243 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + IA+ +P +D+I+EV DARIPFSSE +L+ P + VLNK
Sbjct: 5 WFPGHMHKAQKEIAEVIPQIDVIIEVLDARIPFSSENPMIAELKGDKPV-----VKVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQ-NCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + WI F+++ N + + + + V++ ++ VR L + +
Sbjct: 60 RDLADPELTQVWIDHFEKEHNVKAIAITTSQQSEVQKIMEL----VRKLAPHREEIGKNI 115
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
T M++GIPNVGKS + N+L GR A QP T+ +I I
Sbjct: 116 RT-MIMGIPNVGKSTIINALA--GRTI---------AVTGNQPAVTR--RQQRINLQNGI 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262
+ DTPGIL P++ + +LA TGA+ D+ + E+A Y + L K ++ I
Sbjct: 162 VLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAAHYPEKLKERYQI 221
Query: 263 NQI 265
+++
Sbjct: 222 DEL 224
>gi|346308009|ref|ZP_08850137.1| ribosome biogenesis GTP-binding protein YlqF [Dorea formicigenerans
4_6_53AFAA]
gi|345904364|gb|EGX74112.1| ribosome biogenesis GTP-binding protein YlqF [Dorea formicigenerans
4_6_53AFAA]
Length = 284
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 114/227 (50%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A R + + + L+D+I+E+ DAR+P SS + D+L + R+++LNK
Sbjct: 5 WYPGHMTKAKRMMQENIKLIDLIIELVDARVPLSSRNPDIDELGKNKA-----RLIILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DLA + W +F ++ VNS VK +Q + + D +
Sbjct: 60 SDLAEERWNEAWTEYFKKKGFHVVKVNSRKGGGVKSVQSVIQEACKAKIERDRKRGILNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M++GIPNVGKS NSL G+ AA+ G +PG TK +++ +
Sbjct: 120 PVRAMVVGIPNVGKSTFINSLA--GK-AAAKTGN--------KPGVTKGKQWIRL--NKQ 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P+ D V +LAL G+I D + +ELA + L
Sbjct: 167 VELLDTPGILWPKFEDQTVGLRLALIGSIKDEVLQTEELAAELIRFL 213
>gi|166031982|ref|ZP_02234811.1| hypothetical protein DORFOR_01684 [Dorea formicigenerans ATCC
27755]
gi|166028435|gb|EDR47192.1| ribosome biogenesis GTP-binding protein YlqF [Dorea formicigenerans
ATCC 27755]
Length = 284
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 114/227 (50%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A R + + + L+D+I+E+ DAR+P SS + D+L + R+++LNK
Sbjct: 5 WYPGHMTKAKRMMQENIKLIDLIIELVDARVPLSSRNPDIDELGKNKA-----RLIILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DLA + W +F ++ VNS VK +Q + + D +
Sbjct: 60 SDLAEERWNEAWTEYFKKKGFHVVKVNSRKGGGVKSVQSVIQEACKAKIERDRKRGILNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M++GIPNVGKS NSL G+ AA+ G +PG TK +++ +
Sbjct: 120 PVRAMVVGIPNVGKSTFINSLA--GK-AAAKTGN--------KPGVTKGKQWIRL--NKQ 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P+ D V +LAL G+I D + +ELA + L
Sbjct: 167 VELLDTPGILWPKFEDQTVGLRLALIGSIKDEVLQTEELAAELIRFL 213
>gi|290968506|ref|ZP_06560045.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera genomosp.
type_1 str. 28L]
gi|290781502|gb|EFD94091.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera genomosp.
type_1 str. 28L]
Length = 287
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 127/260 (48%), Gaps = 46/260 (17%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R I + + L+D+++E+ DARIP+SS L + P ++VLNK
Sbjct: 5 WYPGHMAKAKRLIQEHLKLIDVVVELVDARIPWSSTNPMIGTLIGNKP-----SVVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ-------AHVRNLRKSDY 136
DLA + + WI ++++ +NS + K+ + ++ AH R
Sbjct: 60 ADLADAAEVRAWIQQYEREGRQVVALNSKEGKSGKKLVAVIRQSAAPKLAHWRQ-----R 114
Query: 137 DASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI 196
+ +V M+LGIPNVGKS L N L GR A + +PGETK + +
Sbjct: 115 GLKNRSVRTMILGIPNVGKSTLINRLA--GRNV---------AKTADKPGETKGKQWVHL 163
Query: 197 ASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKK 256
+ ++ LDTPG+L P++ + +LA TGAI D+ + + +L E ++
Sbjct: 164 GEYLDL--LDTPGVLWPKLENQVSAYRLAATGAISDTVFDRQTV------VLQLLAELRQ 215
Query: 257 W------AKFSINQI-NKPL 269
W +FS+ Q+ + PL
Sbjct: 216 WYPQELQRRFSLEQLGDTPL 235
>gi|237842815|ref|XP_002370705.1| GTPase domain-containing protein [Toxoplasma gondii ME49]
gi|211968369|gb|EEB03565.1| GTPase domain-containing protein [Toxoplasma gondii ME49]
Length = 452
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 109/233 (46%), Gaps = 17/233 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM AT AI + VD ++EVRDAR P +S L +R++VLNK DL
Sbjct: 120 WFPAHMNRATVAIEKNLKHVDCVVEVRDARAPLTSGNSFLTERLASRGVKRLVVLNKADL 179
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVM 146
+ P + V + + F HV+ K+ V ++
Sbjct: 180 VHKRDGLRAQAVLEDAGLPCLLTCAPELKRVSKVVDFALEHVQPKFKTI------GVWML 233
Query: 147 LLGIPNVGKSALANSLHQIGRITAAEKG----------KLRHATVSPQPGETKDIYSLKI 196
L+G+PN GKS+L N++ ++ + A+ G K A PG TKD+ + +I
Sbjct: 234 LVGLPNTGKSSLLNAMKRLA-VNASRYGSPSNKLVEGVKRTRARAGKAPGLTKDVSAFQI 292
Query: 197 ASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
++ P ++ DTPGI+ P++ D EV KLA G I D G +A Y L LN
Sbjct: 293 SNKPRLFCYDTPGIMLPKMKDAEVNLKLAALGCIDDHRAGEMYVADYILYHLN 345
>gi|365853584|ref|ZP_09393851.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
parafarraginis F0439]
gi|363712209|gb|EHL95908.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
parafarraginis F0439]
Length = 296
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 115/242 (47%), Gaps = 23/242 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + + LVDI+ EV DARIP +S E ++ P + +L K
Sbjct: 13 WFPGHMAKAIRQFEENVSLVDIVFEVIDARIPLTSQNPEVARITGEKP-----HLFILTK 67
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV--RNLRKSDYDASSD 141
DLA + W+ +F P+ V++ + N+ + L + + + R+
Sbjct: 68 KDLADREATQRWLAYFKDHGQPAIAVDAKDHFNINDVLSVINPIMSPKLAREEQKGMKKR 127
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ + +G+PNVGKS + N L + R R A V +PG TK LK
Sbjct: 128 PIRAVSVGVPNVGKSTVLNRL--VNR---------RAAQVGNRPGVTKGQQWLKAGKK-- 174
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
+ +LDTPGIL P+ E+ +KLALTGAI DS ++A + L + A++
Sbjct: 175 LELLDTPGILWPKFASQEIANKLALTGAIKDSVFASDDIALFGLKHFRARHRDQLMARYR 234
Query: 262 IN 263
+N
Sbjct: 235 LN 236
>gi|260773776|ref|ZP_05882691.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio metschnikovii
CIP 69.14]
gi|260610737|gb|EEX35941.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio metschnikovii
CIP 69.14]
Length = 314
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 109/226 (48%), Gaps = 27/226 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + I + +P +D+I+EV DARIP+SSE QLR P I VLNK
Sbjct: 8 WFPGHMHKARKEIEEAIPQIDVIIEVLDARIPYSSENPLISQLRGDKPC-----IKVLNK 62
Query: 84 MDLASPTQFKEWITFFDQ-QNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + WI +Q Q + + + N V L+ + V +
Sbjct: 63 RDLADPEMTELWIAHLEQEQGVKAMAITTANPQEVHRILELCRKMV-----PHREEVGKN 117
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
V M++GIPNVGKS + N+L GR A QP T+ +I +
Sbjct: 118 VRTMIMGIPNVGKSTIINTL--AGRAI---------AQTGNQPAVTR--RQQRINLQNGV 164
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ DTPGIL P++ + +LA TGAI D+ + +++A Y + L
Sbjct: 165 VLSDTPGILWPKVENPHSGFRLAATGAIKDTAMEYEDVAFYTVEYL 210
>gi|251797463|ref|YP_003012194.1| GTP-binding protein HSR1-related [Paenibacillus sp. JDR-2]
gi|247545089|gb|ACT02108.1| GTP-binding protein HSR1-related [Paenibacillus sp. JDR-2]
Length = 296
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 119/236 (50%), Gaps = 31/236 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A R I +++ L+DI +E+ DARIP SS D++ P R++VLNK
Sbjct: 5 WFPGHMTRAKRQIQEKLKLIDIAIELLDARIPLSSRNPMVDEILGGKP-----RLIVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEF----LKFLQAHV-RNLRKSDYDA 138
+DLA P ++WI +F + + V+S V + + LQ + R L K
Sbjct: 60 LDLADPRVTEQWIDYFKYEGHETVAVDSSTGTRVGDIPVKAKEILQEKIDRQLAKG---M 116
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
+ + +++GIPNVGKS L N L GR A +PG TK +K
Sbjct: 117 NPRAIRGLIVGIPNVGKSTLINRLA--GR---------NIAITGDKPGVTKGQQWIKTTF 165
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
++ +LDTPGIL P+ D V +LA+TGAI + + +++A F + ++ Y
Sbjct: 166 --DMDLLDTPGILWPKFEDELVGYRLAMTGAIREQILNVEDIA--FFAVRELAERY 217
>gi|452825101|gb|EME32100.1| GTP-binding family protein isoform 2 [Galdieria sulphuraria]
Length = 356
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 104/207 (50%), Gaps = 17/207 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H+A A R + D++ LVD++LEVRDARIP S+E +L++ +R++VLN+ D+
Sbjct: 57 WYPGHIAKAERVLKDKLRLVDVVLEVRDARIPKSTEHPELQSW--LGEKKRLVVLNRRDM 114
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFL--QAHVRNLRKSDYDASSDTVT 144
WI QQ F N+ + ++ K L N ++ +V
Sbjct: 115 VPQEALSVWIKTIKQQGFEVFDTNAKLGNGIQRLRKALIFCGKAINEKRRVKGLLPRSVH 174
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++G PNVGKSAL N L + R A + + PG T+ ++++ I +
Sbjct: 175 CMIVGYPNVGKSALINRL--VNRAIAKSQNR---------PGVTRTFQWIQVSDQ--IQL 221
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIG 231
LD+PGI+PP++ KLA IG
Sbjct: 222 LDSPGIIPPKLVSQSSAEKLAFCNDIG 248
>gi|354807458|ref|ZP_09040925.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
curvatus CRL 705]
gi|354514040|gb|EHE86020.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
curvatus CRL 705]
Length = 282
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 117/233 (50%), Gaps = 25/233 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HMA A + I +R+ VD+ILE+ DAR+P SS +L + P +L++NK
Sbjct: 5 WYPGHMAKAQKQIKERLKAVDLILEIVDARVPESSINPMIAELGQNKP-----TLLIMNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSD 141
D+A + ++WI F ++ + +++ +K + + K Q + + +K +
Sbjct: 60 ADMADAKRTQQWIETFKKRGITAIALDAQHKSKLPQIEKVAQEILADKLAKKRAKGILNP 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M +G+PNVGKS + N L Q A +PG TK+ LK +
Sbjct: 120 VIRAMCVGVPNVGKSTILNRLVQKN-----------IAVTGNRPGVTKNQQWLKAGQ--S 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+ +LDTPG+L P+ D V +KLALTGAI D+ ++ Y L F D Y
Sbjct: 167 LELLDTPGVLWPKFEDPAVGNKLALTGAISDAIYHPDDVVVYALDY--FKDFY 217
>gi|323493947|ref|ZP_08099064.1| GTPase YlqF [Vibrio brasiliensis LMG 20546]
gi|323311888|gb|EGA65035.1| GTPase YlqF [Vibrio brasiliensis LMG 20546]
Length = 311
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 121/246 (49%), Gaps = 33/246 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + I + +P VD+I+EV DARIPFSSE ++R P + VLNK
Sbjct: 5 WFPGHMHKARKEIEEAIPQVDVIIEVLDARIPFSSENPMISEIRGDKPV-----VKVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQ-NCPSFGVNSHNKDNVKEFLKF---LQAHVRNLRKSDYDAS 139
DLA P + WI F+++ N + + + N V + L+ L H + K+
Sbjct: 60 RDLADPELTQLWIDHFEKENNVKAMAITTSNVQEVNKILELCRKLAPHREEIGKN----- 114
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS + N+L GR A QP T+ +I
Sbjct: 115 ---IRTMIMGIPNVGKSTIINTLA--GRTVAV---------TGNQPAVTR--RQQRINLQ 158
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAK 259
I + DTPGIL P++ + +LA TGA+ D+ + E+A Y + L + + +
Sbjct: 159 NGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKAYPERLQER 218
Query: 260 FSINQI 265
+ I+++
Sbjct: 219 YQIDEL 224
>gi|335429710|ref|ZP_08556608.1| GTPase YlqF [Haloplasma contractile SSD-17B]
gi|334889720|gb|EGM28005.1| GTPase YlqF [Haloplasma contractile SSD-17B]
Length = 295
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 116/224 (51%), Gaps = 17/224 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ LVDII E+RDARIP+SS + + + R+++LNK +
Sbjct: 11 WFPGHMAKARRQVEEKLKLVDIIYELRDARIPYSSSNPMMGD--IIKNKPRLILLNKAKM 68
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRK--SDYDASSDTVT 144
A + +EWI ++ + ++S + N+ + +K + +++ + +
Sbjct: 69 ADEDKTEEWINYYKDNGIIALDIDSISGYNMPKIIKKSREVLKDQLEKQQQKGLKQQNIK 128
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPNVGKS N+L K + A +PG TK + + + + +
Sbjct: 129 AMIIGIPNVGKSTFINTL-----------AKRKVARTGDRPGVTKAQQWITVGN--GLQL 175
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
LDTPGIL P+ + +V KLA+TGAI D + ++ Y L L
Sbjct: 176 LDTPGILWPKFEEQKVGFKLAITGAIKDQILHLDDITIYALDFL 219
>gi|198450767|ref|XP_001358117.2| GA14342 [Drosophila pseudoobscura pseudoobscura]
gi|338818379|sp|Q29AU5.2|MTG1_DROPS RecName: Full=Mitochondrial GTPase 1; Flags: Precursor
gi|198131183|gb|EAL27254.2| GA14342 [Drosophila pseudoobscura pseudoobscura]
Length = 320
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 115/245 (46%), Gaps = 16/245 (6%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMD 85
W+ HM R I ++ VD I+E+ D+RIP + Q + S + ILVLNK+D
Sbjct: 22 WFPGHMNKGMRQIQQKLRNVDCIVEIHDSRIPLAGRNSQFFDTITGSGVKPHILVLNKVD 81
Query: 86 LASPTQFKEWITFFDQQ-----NCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD-AS 139
L P Q + + +Q N V + L V + S Y+ A
Sbjct: 82 LLGPKQQRSVLQQLRRQQPELKNILFTNCKDQRNHGVLDILPLATQLVGD--SSRYNRAQ 139
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDI-YSLKIAS 198
S +M++G+PNVGKS++ N L + K A V + G T+ + +KI
Sbjct: 140 SAEHNIMIIGVPNVGKSSIINVLRNV------HLKKRSAARVGAEAGVTRAVGERIKIQE 193
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWA 258
P +Y++DTPGIL P + D E+ KLAL G + D VG +A Y L LN Y+
Sbjct: 194 KPAVYMIDTPGILQPSVTDDEMGMKLALVGCLPDHIVGEDLIADYLLYWLNKHRRYEYVE 253
Query: 259 KFSIN 263
K S++
Sbjct: 254 KLSLS 258
>gi|89895336|ref|YP_518823.1| hypothetical protein DSY2590 [Desulfitobacterium hafniense Y51]
gi|89334784|dbj|BAE84379.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 276
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 20/222 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ VD+++E+ DAR+P SS L+ +I++LNK+DL
Sbjct: 5 WFPGHMAKAKRLLLEQLRWVDVVIELGDARLPESSRNPLLQEM--LGDKPKIIILNKVDL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P + W Q N P V++ N V + + + L AH + + + + ++
Sbjct: 63 ADPYWTEIWTRKLRQAN-PVLAVSATNGAGVGKIVPEVERLMAH-KIEKWTAKGIRARSI 120
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
VM++GIPN GKS+L N+L I +A+ A +PG T+ ++I H +
Sbjct: 121 RVMIVGIPNCGKSSLVNNL-----IGSAK------AKTGNKPGVTRGNQWIRI--HERVE 167
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPG+L P+ D EV KL GAI D + +EL+ + L
Sbjct: 168 LLDTPGLLWPKFEDPEVGKKLGAVGAIRDEVLNLEELSLWVL 209
>gi|331269648|ref|YP_004396140.1| HSR1-like GTP-binding protein [Clostridium botulinum BKT015925]
gi|329126198|gb|AEB76143.1| GTP-binding protein, HSR1-related protein [Clostridium botulinum
BKT015925]
Length = 280
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 119/241 (49%), Gaps = 37/241 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA R I + + VDI++E+RDARI SS + D + + P RI++LNK
Sbjct: 5 WFPGHMAKTRREIKENLKFVDIVIEIRDARIVKSSANPDIDDICKNKP-----RIILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQ-------NCPSF-GVNSHNKDNVKEFLKFLQAHVRNLRKSD 135
DL+ KEWI + NC + G+NS K + + LK Q H R K
Sbjct: 60 SDLSEEKVTKEWIKKLSNEFIRVASVNCVTGKGLNSI-KPMINDLLK--QKHDRLRAKGV 116
Query: 136 YDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLK 195
+ T M++GIPNVGKS+ N + K A V +PG TK+ +K
Sbjct: 117 VNI---TTRAMVVGIPNVGKSSFINKM-----------AKNNTAKVGDKPGVTKNKQWIK 162
Query: 196 IASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYK 255
+ I +LDTPG+L P+ D +V LA TGAI D + + LA +G L +EY
Sbjct: 163 --TKMGIELLDTPGVLWPKFEDEQVGLNLAFTGAIKDEIMDIETLAFKLIGKL--QEEYP 218
Query: 256 K 256
K
Sbjct: 219 K 219
>gi|336436401|ref|ZP_08616113.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 1_4_56FAA]
gi|336007266|gb|EGN37291.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 1_4_56FAA]
Length = 282
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A R + + M L+D+++E+ DAR+P SS + D+L + R+++LNK
Sbjct: 5 WYPGHMTKAKRMMQENMKLIDLVIELVDARVPVSSRNPDLDELGKNKA-----RLILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DLA W +F ++ +N+ +K +Q + + D +
Sbjct: 60 SDLAEERMNDVWAAYFKEKGYSVVKLNAKKGGGIKSIQGVIQEACKEKIERDRKRGILNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M++GIPNVGKS N+L GK A +PG TK +++ + N
Sbjct: 120 PVRAMVVGIPNVGKSTFINALA----------GKA-CAKTGNKPGVTKGKQWIRL--NKN 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LDTPGIL P+ D V +LA G+I D + +ELA G L
Sbjct: 167 VELLDTPGILWPKFEDQTVGLRLAWIGSIKDEILNTEELAAELTGFL 213
>gi|375262989|ref|YP_005025219.1| GTPase YlqF [Vibrio sp. EJY3]
gi|369843416|gb|AEX24244.1| GTPase YlqF [Vibrio sp. EJY3]
Length = 314
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 117/246 (47%), Gaps = 33/246 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + I + +P VD+I+EV DARIPFSSE Q+R P + VLNK
Sbjct: 8 WFPGHMHKARKEIEEAIPQVDVIIEVLDARIPFSSENPLISQIRGDKPV-----VKVLNK 62
Query: 84 MDLASPTQFKEWITFFDQ-QNCPSFGVNSHNKDNVKEFLKF---LQAHVRNLRKSDYDAS 139
DLA P + WI +Q QN + + + V + ++ L H + K+
Sbjct: 63 RDLADPEMTQLWIDHLEQEQNVKAMAITTSEPQEVHKIMELCRKLAPHREEIGKN----- 117
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS + N+L GR A QP T+ +I
Sbjct: 118 ---IRTMIMGIPNVGKSTIINTLA--GRTIAV---------TGNQPAVTR--RQQRINLQ 161
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAK 259
I + DTPGIL P++ + +LA TGA+ D+ + E+A Y + L K +
Sbjct: 162 NGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTIEYLAAQYPEKLKQR 221
Query: 260 FSINQI 265
+ I ++
Sbjct: 222 YQIEEL 227
>gi|323497165|ref|ZP_08102185.1| GTPase YlqF [Vibrio sinaloensis DSM 21326]
gi|323317740|gb|EGA70731.1| GTPase YlqF [Vibrio sinaloensis DSM 21326]
Length = 311
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 120/246 (48%), Gaps = 33/246 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + I + +P VD+I+EV DARIPFSSE +LR P + VLNK
Sbjct: 5 WFPGHMHKARKEIEEAIPQVDVIIEVLDARIPFSSENPMISELRGDKPV-----VKVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQ-NCPSFGVNSHNKDNVKEFLKF---LQAHVRNLRKSDYDAS 139
DLA P + WI F+++ N + + + N V + L+ L H + K+
Sbjct: 60 RDLADPELTELWIEHFEKENNVKAMAITTSNVQEVNKILELCRKLAPHREEIGKN----- 114
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS + N+L GR A QP T+ +I
Sbjct: 115 ---IRTMIMGIPNVGKSTIINTLA--GRSV---------AVTGNQPAVTR--RQQRINLQ 158
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAK 259
I + DTPGIL P++ + +LA TGA+ D+ + E+A Y + L + + +
Sbjct: 159 NGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKAYPQRLQER 218
Query: 260 FSINQI 265
+ I ++
Sbjct: 219 YQIEEL 224
>gi|148544007|ref|YP_001271377.1| GTP-binding protein YlqF [Lactobacillus reuteri DSM 20016]
gi|184153401|ref|YP_001841742.1| GTPase [Lactobacillus reuteri JCM 1112]
gi|227364920|ref|ZP_03848965.1| GTP-binding protein [Lactobacillus reuteri MM2-3]
gi|325682455|ref|ZP_08161972.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus reuteri
MM4-1A]
gi|148531041|gb|ABQ83040.1| Ras superfamily GTP-binding protein YlqF [Lactobacillus reuteri DSM
20016]
gi|183224745|dbj|BAG25262.1| GTPase [Lactobacillus reuteri JCM 1112]
gi|227070067|gb|EEI08445.1| GTP-binding protein [Lactobacillus reuteri MM2-3]
gi|324978294|gb|EGC15244.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus reuteri
MM4-1A]
Length = 290
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 33/232 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R I ++MPLVDI+ E+ DAR+P+SS+ ++ ++L++ K DL
Sbjct: 6 WFPGHMAKALRQIREQMPLVDILFELVDARVPYSSQNPEV--ALAAGEKPKLLIMTKTDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNV--------KEFL--KFLQAHVRNLRKSDY 136
A + EWI +F+Q N P ++S ++NV KE L K + + ++K
Sbjct: 64 ADQKRLNEWIKYFEQHNQPVLALDSR-QNNVAKVVTAKSKEILKDKLAEEKAKGMKKR-- 120
Query: 137 DASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI 196
+ M +G+PNVGKS L N H + + AA + PG T L+
Sbjct: 121 -----PIRAMCVGVPNVGKSTLLN--HLVKKNVAATGNR---------PGVTTGQQWLR- 163
Query: 197 ASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
S + +LDTPG+L + + LALTGAI DS ++A + L L
Sbjct: 164 -SSAELELLDTPGVLWHKFATPKQGIMLALTGAIKDSLYAKDDVALFALDYL 214
>gi|357057766|ref|ZP_09118624.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas infelix
ATCC 43532]
gi|355375014|gb|EHG22305.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas infelix
ATCC 43532]
Length = 300
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 107/210 (50%), Gaps = 17/210 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A R + + + LVD+++E+ DARIP SS LR R++VLNK DL
Sbjct: 15 WYPGHMRKAERLVKENLKLVDVVVELLDARIPMSSANPVLR--EIVGDKPRVIVLNKADL 72
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDASSDTVT 144
A + W+ +F + V++ VKE ++ + A + + + A +
Sbjct: 73 ADEAATRAWVKYFAAGGISAVPVDAVKGRGVKELVQAIAKCAKPKTDKLVQHGAKARAAR 132
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M+LGIPNVGKS+L N R++ K K+ + +PG T+ +++ + + +
Sbjct: 133 CMILGIPNVGKSSLIN------RLSGGAKTKVEN-----RPGVTRAKQWIRLGAQ--LEL 179
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSF 234
LD PGIL P+ D + LA TGAI D+
Sbjct: 180 LDMPGILWPKFEDRQAALHLAFTGAINDNV 209
>gi|336311698|ref|ZP_08566659.1| 50S ribosomal subunit maturation GTPase RbgA [Shewanella sp. HN-41]
gi|335864812|gb|EGM69881.1| 50S ribosomal subunit maturation GTPase RbgA [Shewanella sp. HN-41]
Length = 313
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 116/227 (51%), Gaps = 31/227 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + I + MP VD+++EV DARIP+SSE +LR P I +LNK
Sbjct: 5 WYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVAKLRGDKPC-----IKLLNK 59
Query: 84 MDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P +WI + + +Q + + + VK+ + V + K++ D
Sbjct: 60 SDLADPEVTAQWIEYLEREQGVKATAITTLQAAMVKKIPDICRKLVPSRDKTEKD----- 114
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS + N+L GR+ A +P TK +I I
Sbjct: 115 IRTMIMGIPNVGKSTIINTLA--GRVI---------AKTGNEPAVTKT--QQRINLRNGI 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKEL----AQYFL 245
+ DTPGIL P++ + +LA+TGAI D+ + +++ A+YFL
Sbjct: 162 VLSDTPGILWPKVDNEASSYRLAVTGAIKDTAMEYEDVALFAAKYFL 208
>gi|120555289|ref|YP_959640.1| ribosomal biogenesis GTPase [Marinobacter aquaeolei VT8]
gi|120325138|gb|ABM19453.1| Ras superfamily GTP-binding protein YlqF [Marinobacter aquaeolei
VT8]
Length = 307
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 116/220 (52%), Gaps = 25/220 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + I MP +D+I+EV DARIPFSSE LR P I VLNK
Sbjct: 5 WFPGHMHKARKEIKKVMPQMDLIIEVVDARIPFSSENPLVPSLRGDTPL-----IKVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTV 143
DLA P ++W+ + +++ +HN+ +E L L+ + +D +
Sbjct: 60 RDLADPVITEQWLAWLERERGVRAVTLTHNQR--QEALGILK--LAEEMTPGHDRQKSAL 115
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
VM+LGIPNVGKS L N+L GR AA+ G +P T+ ++K+ N+
Sbjct: 116 RVMILGIPNVGKSTLINTLA--GR-PAAKTGN--------EPAVTRAQQAIKLPD--NVL 162
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
+ DTPG L P++ V+ +LA+TGAI + + +++A +
Sbjct: 163 LYDTPGFLWPKLSPVQCGYRLAVTGAIRSAVLDFEDVALF 202
>gi|336317734|ref|ZP_08572585.1| ribosome biogenesis GTP-binding protein YlqF [Rheinheimera sp.
A13L]
gi|335878081|gb|EGM76029.1| ribosome biogenesis GTP-binding protein YlqF [Rheinheimera sp.
A13L]
Length = 311
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 106/211 (50%), Gaps = 27/211 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + IA+ MP VDII+E+ DARIPFSSE +LR P I VLNK
Sbjct: 5 WFPGHMHKARKEIAEVMPQVDIIIEMLDARIPFSSENPLVPELRGDTPV-----IKVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQN-CPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P W+ F+Q+ + ++ N + +K L+ N D +
Sbjct: 60 ADLADPAVTALWVERFEQEKGIKAIPISQQNPEQIKALLQLC-----NQMLPDRNLDIRG 114
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
M++GIPNVGKS + N+L GR T A+ G + G TK +I N+
Sbjct: 115 ARAMIMGIPNVGKSTIINTLA--GR-TIAKTGN--------EAGVTK--IQQRIRLDNNV 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDS 233
+ DTPG L P++ +LA+TGAI D+
Sbjct: 162 ILTDTPGFLWPKLSPASCGYRLAVTGAIKDT 192
>gi|167037683|ref|YP_001665261.1| HSR1-like GTP-binding protein [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|320116098|ref|YP_004186257.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166856517|gb|ABY94925.1| GTP-binding protein, HSR1-related [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929189|gb|ADV79874.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 277
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 111/223 (49%), Gaps = 17/223 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA + + I + LVD++ E+ DARIP SS + + + +RI++LNK DL
Sbjct: 4 WYPGHMAKSKKEIVSNLKLVDVVYEIVDARIPKSSRNPDIDDI--VKNKKRIILLNKADL 61
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN-LRKSDYDASSDTVTV 145
A WI +F + + VNS +KE + ++ L K +
Sbjct: 62 ADDVITDLWIEYFKGKGIEAVKVNSITGFGLKEINEATNKVCQDILEKKKQKGMIPRLRG 121
Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVL 205
M++G+PNVGKS N L IG + A +PG T+ ++ +K P +L
Sbjct: 122 MIVGVPNVGKSTFINKL--IGS---------KRAKTGDKPGVTRALHWIK---TPYFDLL 167
Query: 206 DTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
DTPGIL P+ D +V LA+TGAI D + +E+A + IL
Sbjct: 168 DTPGILWPKFDDKKVGIMLAITGAIKDEILDIEEIALNLVAIL 210
>gi|34849441|gb|AAP58940.1| putative GTPase [Spiroplasma kunkelii CR2-3x]
Length = 296
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 137/280 (48%), Gaps = 51/280 (18%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A + I ++ L+D+I+E+ D+RIPFSS D LR P ++++LNK
Sbjct: 7 WFPGHMAKAIKQIDEQSKLIDLIIEIVDSRIPFSSSNPLVDNLRGLKP-----KLIILNK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYDASS 140
DLA P K W ++ Q ++S + + K E + F+ A + R + S
Sbjct: 62 KDLADPVAIKAWFKYYQSQQIAVLPLDSKHGNITKLIIEKIYFVLAG-KIERNQNRGIKS 120
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHAT-VSPQPGETKDIYSLKIASH 199
+ VM++GIPNVGKS N+L + R++T V +PG TK LK+
Sbjct: 121 PKLKVMVIGIPNVGKSTFINALIK------------RNSTRVGNKPGVTKGQQWLKLNHQ 168
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELA--------QYFLGIL--- 248
I ++DTPGIL P+I+D +V LA +I + + +E+ +Y+ +L
Sbjct: 169 --IDLVDTPGILWPKINDPQVAINLAFIRSIKEDILPKEEICLAAIKWMHKYYFSLLVKQ 226
Query: 249 -------NF--SDEYKKWAKFSINQINKPLTLHHKADQSS 279
NF +DE K + + Q N+ HK D+ +
Sbjct: 227 YHLLPSDNFDVTDEQKLFELLLVMQKNR----FHKVDEDN 262
>gi|163801603|ref|ZP_02195501.1| ribosomal biogenesis GTPase [Vibrio sp. AND4]
gi|159174520|gb|EDP59322.1| ribosomal biogenesis GTPase [Vibrio sp. AND4]
Length = 314
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 121/243 (49%), Gaps = 27/243 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + IA+ +P +D+I+EV DARIPFSSE +L+ P + VLNK
Sbjct: 8 WFPGHMHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMIAELKGDKPV-----VKVLNK 62
Query: 84 MDLASPTQFKEWITFFDQQ-NCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + WI F+++ N + + + V++ ++ VR L + +
Sbjct: 63 RDLADPQLTQVWIDHFEKEHNVKAIAITTSQSQEVQKIMEL----VRKLAPHREEIGKNI 118
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
T M++GIPNVGKS + N+L GR A QP T+ +I I
Sbjct: 119 RT-MIMGIPNVGKSTIINALA--GRTI---------AVTGNQPAVTR--RQQRINLQNGI 164
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262
+ DTPGIL P++ + +LA TGA+ D+ + E+A Y + L K ++ I
Sbjct: 165 VLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAAHYPEKLKERYQI 224
Query: 263 NQI 265
+++
Sbjct: 225 DEL 227
>gi|227543434|ref|ZP_03973483.1| GTP-binding protein [Lactobacillus reuteri CF48-3A]
gi|338204384|ref|YP_004650529.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus reuteri
SD2112]
gi|227186586|gb|EEI66657.1| GTP-binding protein [Lactobacillus reuteri CF48-3A]
gi|336449624|gb|AEI58239.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus reuteri
SD2112]
Length = 290
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 33/232 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R I ++MPLVDI+ E+ DAR+P+SS+ ++ ++L++ K DL
Sbjct: 6 WFPGHMAKALRQIREQMPLVDILFELVDARVPYSSQNPEV--ALAAGEKPKLLIMTKTDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNV--------KEFL--KFLQAHVRNLRKSDY 136
A + EWI +F+Q N P ++S ++NV KE L K + + ++K
Sbjct: 64 ADQKRLNEWIKYFEQHNQPVLALDSR-QNNVAKVVTAKSKEILKDKLAEEKAKGMKKR-- 120
Query: 137 DASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI 196
+ M +G+PNVGKS L N H + + AA + PG T L+
Sbjct: 121 -----PIRAMCVGVPNVGKSTLLN--HLVKKNVAATGNR---------PGVTTGQQWLR- 163
Query: 197 ASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
S + +LDTPG+L + + LALTGAI DS ++A + L L
Sbjct: 164 -SSAELELLDTPGVLWHKFATPKQGIMLALTGAIKDSLYAKDDVALFALDYL 214
>gi|114562663|ref|YP_750176.1| ribosomal biogenesis GTPase [Shewanella frigidimarina NCIMB 400]
gi|114333956|gb|ABI71338.1| GTP-binding [Shewanella frigidimarina NCIMB 400]
Length = 313
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 115/226 (50%), Gaps = 31/226 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + I + MP VD+++EV DARIP+SSE QLR P I +LNK
Sbjct: 5 WYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVSQLRGDKPC-----IKLLNK 59
Query: 84 MDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHV--RNLRKSDYDASS 140
DLA P +WI + + +Q + + S VK + V R++ + D
Sbjct: 60 SDLADPKVTAQWIEYLEREQGVQASAITSLQPSMVKSIPDLCRKLVPHRDIMEKD----- 114
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ M++GIPNVGKS + N+L GR T A+ G +P T+ +I
Sbjct: 115 --IRTMIMGIPNVGKSTIINTLA--GR-TIAKTGN--------EPAVTR--RQQRINLRN 159
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLG 246
I + DTPGIL P++ + +LA+TGAI D+ + +++A + G
Sbjct: 160 GIVLSDTPGILWPKVDNEASSYRLAVTGAIKDTAMEYEDVAMFAAG 205
>gi|374673347|dbj|BAL51238.1| GTP-binding protein [Lactococcus lactis subsp. lactis IO-1]
Length = 282
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 109/228 (47%), Gaps = 27/228 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM+ A R + + + VD ++E+ DAR+P SS Q+ P RI+ LNK
Sbjct: 5 WFPGHMSKARRQVQENLKYVDFVIELVDARLPISSRNPMLGQIIGDKP-----RIIALNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD--ASSD 141
DLA +WI +FD Q + +NS + K + + + D + +
Sbjct: 60 ADLADSNAVAQWIEYFDDQGFITLAINSKEEYTAKRLTVAAKKLMTDKVAHDKERGIAHT 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
T+ M++GIPN GKS L N L GK + A +PG TK I ++
Sbjct: 120 TLRTMIIGIPNAGKSTLMNRLA----------GK-KVAVTGNRPGVTKG--QQWIRTNKE 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELA----QYFL 245
+ +LDTPGIL P+ D V KLALTGAI D + E+ YFL
Sbjct: 167 LELLDTPGILWPKFEDQLVGLKLALTGAIKDDLLPMDEVTIFGLNYFL 214
>gi|255524251|ref|ZP_05391210.1| GTP1/OBG protein [Clostridium carboxidivorans P7]
gi|296185373|ref|ZP_06853783.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
carboxidivorans P7]
gi|255512076|gb|EET88357.1| GTP1/OBG protein [Clostridium carboxidivorans P7]
gi|296050207|gb|EFG89631.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
carboxidivorans P7]
Length = 280
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 116/237 (48%), Gaps = 33/237 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA R I + + LVD I+E+RDARI SS + D L + P RI++LNK
Sbjct: 5 WFPGHMAKTRREIKENLKLVDAIIEIRDARIVRSSKNPDIDDLCGNKP-----RIILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL------RKSDYD 137
DL+ KEWI + N VN E LK ++A V L RK
Sbjct: 60 SDLSEDKVTKEWIKTLSKDNIRVLTVNCIT----GEGLKSIKAVVNELLQEKHERKKAKG 115
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ T VM++GIPNVGKS+ N ++ + + A+ G +PG T+ +K
Sbjct: 116 IVNITDRVMVVGIPNVGKSSFIN---KVAKSSIAKTG--------DRPGVTRSRQWIK-- 162
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
+ I ++DTPGIL P++ E LA TGAI D + +ELA + D+Y
Sbjct: 163 TKIGIELMDTPGILWPKLESEETQLNLAFTGAIKDEVMDIEELALKL--VERLQDKY 217
>gi|392426853|ref|YP_006467847.1| Ras superfamily GTP-binding protein YlqF [Desulfosporosinus
acidiphilus SJ4]
gi|391356816|gb|AFM42515.1| Ras superfamily GTP-binding protein YlqF [Desulfosporosinus
acidiphilus SJ4]
Length = 276
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 131/245 (53%), Gaps = 24/245 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + D++ VD+++E+ DARIP SS L H +++L+LNK DL
Sbjct: 5 WFPGHMAKARRLLTDQLKWVDVVIELADARIPASSRNPLL--HEMLGKKQKLLLLNKADL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN--LRKSDYDASSDTVT 144
A P ++W+ + P++ +++ + VK+ + L++ VR+ + ++ +
Sbjct: 63 ADPAWTQKWLEKL-RTKSPAYALSAATGNGVKQIVPALESLVRSKQAKLAEKGVRPQLIK 121
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
VM++GIPN+GKS+L N L T + K V +PG T+ ++I H + +
Sbjct: 122 VMIVGIPNIGKSSLINQL------TGGSQAK-----VGNKPGVTRGNQWVRI--HDRVEL 168
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
LDTPG+L P+ D E+ KLA GAI D +EL+ + + D K + S+N+
Sbjct: 169 LDTPGMLWPKFEDQEIGRKLAALGAIKDEVFDVEELSIWIM------DWLKANSPQSLNR 222
Query: 265 INKPL 269
+P+
Sbjct: 223 YQEPV 227
>gi|359393420|ref|ZP_09186473.1| Ribosome biosis GTPase A [Halomonas boliviensis LC1]
gi|357970667|gb|EHJ93112.1| Ribosome biosis GTPase A [Halomonas boliviensis LC1]
Length = 310
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 120/246 (48%), Gaps = 36/246 (14%)
Query: 32 MAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNKMDLAS 88
M A R IA+ +P +D+++EV DAR+P+SS +L H P + +L++ DLA
Sbjct: 1 MNKARRQIAEVLPEIDVVIEVLDARLPYSSANPMLAELTRHKPV-----LKILSRADLAD 55
Query: 89 PTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVML 147
P + EW+ +FD Q+N + V + N +K+ K +R +D D V VM+
Sbjct: 56 PERTAEWVAYFDAQENMRALAVTTTNTRELKKIPKLCHELAGAVR-ADRD-----VRVMV 109
Query: 148 LGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDT 207
+GIPNVGKS L N L GR + A +P TK ++I + + DT
Sbjct: 110 MGIPNVGKSTLINGLA--GR---------KIAKTGNEPAVTKRQQKVRIDGR--VALTDT 156
Query: 208 PGILPPEIHDVEVCSKLALTGAIGDS--------FVGGKELAQYFLGILNFSDEYKKWAK 259
PG+L P+I D +LA TGAI D+ V ELA+ + L + K+
Sbjct: 157 PGVLWPKIEDQASAYRLAATGAIRDTAIEYADVAIVTSAELAKRYPEALTERYKLKELPP 216
Query: 260 FSINQI 265
++ I
Sbjct: 217 YAAPDI 222
>gi|194467935|ref|ZP_03073921.1| GTP-binding protein HSR1-related [Lactobacillus reuteri 100-23]
gi|194452788|gb|EDX41686.1| GTP-binding protein HSR1-related [Lactobacillus reuteri 100-23]
Length = 290
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 33/232 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R I ++MPLVDI+ E+ DAR+P+SS+ ++ ++L++ K DL
Sbjct: 6 WFPGHMAKALRQIREQMPLVDILFELVDARVPYSSQNPEV--ALAAGEKPKLLIMTKTDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNV--------KEFL--KFLQAHVRNLRKSDY 136
A + EWI +F+Q N P ++S ++NV KE L K + + ++K
Sbjct: 64 ADQKRLNEWIKYFEQHNQPVLALDSR-QNNVAKVVTAKSKEILKDKLAEEKAKGMKKR-- 120
Query: 137 DASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI 196
+ M +G+PNVGKS L N H + + AA + PG T L+
Sbjct: 121 -----PIRAMCVGVPNVGKSTLLN--HLVKKNVAATGNR---------PGVTTGQQWLR- 163
Query: 197 ASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
S + +LDTPG+L + + LALTGAI DS ++A + L L
Sbjct: 164 -SSAKLELLDTPGVLWHKFATPKQGIMLALTGAIKDSLYAKDDVALFALDYL 214
>gi|188588618|ref|YP_001920596.1| ribosomal biogenesis GTPase [Clostridium botulinum E3 str. Alaska
E43]
gi|251780773|ref|ZP_04823693.1| GTP-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|188498899|gb|ACD52035.1| GTP-binding protein [Clostridium botulinum E3 str. Alaska E43]
gi|243085088|gb|EES50978.1| GTP-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 285
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 114/244 (46%), Gaps = 37/244 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HM R I + + LVD ++E+RDARIP SS + D L P RI++LNK
Sbjct: 5 WFPGHMKKTQREIKENLKLVDAVIEIRDARIPRSSANPDIDSLLQGKP-----RIILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
DL K+WI + VN D LK ++ + +L K +D
Sbjct: 60 SDLTEGKVTKDWIKHLTKDEVRVLEVNCLKGDG----LKAIKPMLLSLLKEKHDRLRAKG 115
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ T VM++GIPNVGKS N ++ R + A+ G +PG TK +K
Sbjct: 116 MVNITTRVMVVGIPNVGKSTFIN---KMARNSIAKTGD--------RPGVTKSKQWIK-- 162
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL------NFS 251
+ I +LDTPG+L P D E LA TGAI D + +EL+ + L N
Sbjct: 163 TSIGIELLDTPGVLWPRFEDEETALNLAFTGAIKDEIMDIEELSYKLVERLQSFYTANLK 222
Query: 252 DEYK 255
+ YK
Sbjct: 223 ERYK 226
>gi|119476186|ref|ZP_01616538.1| GTP-binding protein [marine gamma proteobacterium HTCC2143]
gi|119450813|gb|EAW32047.1| GTP-binding protein [marine gamma proteobacterium HTCC2143]
Length = 307
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 133/258 (51%), Gaps = 34/258 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + I + +P + +I+EV DARIPFSSE +LR P I VL K
Sbjct: 5 WFPGHMNKARKQIKELLPQIHLIIEVLDARIPFSSENPMIAELRGDKPC-----IKVLTK 59
Query: 84 MDLASPTQFKEWITFFDQQN-CPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + W+ + D+Q + V + D +++ + + + + DA +
Sbjct: 60 SDLADPKITERWLQYLDKQKGIKAIAVTTKQPDIIRQLVPLCRKML-----PERDAGHND 114
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ VM++GIPNVGKS L N+L G+ T A+ G +P TK +I I
Sbjct: 115 IHVMIMGIPNVGKSTLINTLA--GK-TIAKTGN--------EPAVTKG--QQRINLRNGI 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY---FLGILNFSDEYK-KWA 258
+ DTPG+L P++ + +LA TGAI D+ + +++A + FL +LN+ + + ++
Sbjct: 162 MLFDTPGMLWPKVESEKSSYRLATTGAIKDTAMSYEDVAFFAADFL-LLNYPERLRERYQ 220
Query: 259 KFSI--NQINKPLTLHHK 274
I N+++ T+ HK
Sbjct: 221 MIDIPDNELDLLETIGHK 238
>gi|312883732|ref|ZP_07743453.1| ribosomal biogenesis GTPase [Vibrio caribbenthicus ATCC BAA-2122]
gi|309368615|gb|EFP96146.1| ribosomal biogenesis GTPase [Vibrio caribbenthicus ATCC BAA-2122]
Length = 314
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 115/229 (50%), Gaps = 33/229 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + I + +P VD+I+EV DARIPFSSE +LR P + VLNK
Sbjct: 8 WFPGHMHKARKEIEEAIPQVDVIIEVLDARIPFSSENPMISELRGDKPV-----VKVLNK 62
Query: 84 MDLASPTQFKEWITFFDQQ-NCPSFGVNSHNKDNVKEFLKF---LQAHVRNLRKSDYDAS 139
DLA P K WI F+++ N + + + + V + L+ L H + KS
Sbjct: 63 RDLADPELTKLWIDHFEKENNIKAIAITTSSVQEVNKILELCRKLAPHREEIGKS----- 117
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS + N+L GR A+ G QP T+ +I
Sbjct: 118 ---IRTMIMGIPNVGKSTIINTLA--GR-AVAQTGN--------QPAVTR--RQQRINLQ 161
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ + DTPGIL P++ + +LA TGA+ D+ + E+A Y + L
Sbjct: 162 NGVVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYL 210
>gi|269118825|ref|YP_003307002.1| GTP-binding protein HSR1-like protein [Sebaldella termitidis ATCC
33386]
gi|268612703|gb|ACZ07071.1| GTP-binding protein HSR1-related protein [Sebaldella termitidis
ATCC 33386]
Length = 285
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 114/223 (51%), Gaps = 19/223 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM IA+ + +VD+++EV DARIP SS+ + + +R+ VLNK+DL
Sbjct: 5 WYPGHMKKTKETIAENLKIVDLVIEVLDARIPLSSKNPDI--SKLAKNKKRLTVLNKVDL 62
Query: 87 ASPTQFKEWITFFDQQNCPSF--GVNSHNKDNVKEFLKFL-QAHVRNLRKSDYDASSDT- 142
A + + W +F + + + +++ N+ E + + + ++ L K+ T
Sbjct: 63 ADEREVENWKEYFIRNDISDYVLAISAEKGTNLNELKRIVDEIYIEKLEKAKKKGLRKTE 122
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
V ++ GIPNVGKS L N GK + A V +PG T+ +K + +
Sbjct: 123 VRALIAGIPNVGKSKLINKFA----------GKTK-ARVGDKPGFTRGKQWVK--ASEKL 169
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPG+L P+ D EV LA+TG+I D + +E+ F+
Sbjct: 170 ELLDTPGVLWPKFDDPEVGYSLAITGSIKDDILPIEEVVSVFI 212
>gi|407716755|ref|YP_006838035.1| 50S ribosomal subunit maturation GTPase RbgA [Cycloclasticus sp.
P1]
gi|407257091|gb|AFT67532.1| 50S ribosomal subunit maturation GTPase RbgA [Cycloclasticus sp.
P1]
Length = 306
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 115/229 (50%), Gaps = 35/229 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRR-----ILVL 81
WY HM A + I R+P VD+ +EV DARIP+SSE +P +S R I +L
Sbjct: 5 WYPGHMHKAQKEIKQRLPEVDMFIEVLDARIPYSSE-------NPMLASIRADKPCIKIL 57
Query: 82 NKMDLASPTQFKEWITFFDQ-QNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASS 140
NK DLA + K W + ++ +N + +N + + ++ Q V N
Sbjct: 58 NKTDLAQADKTKAWQEYLERNKNTKTLALNLNQPNKSEQIFSLCQKLVPN-----KGTKI 112
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+T ++ GIPNVGKS L N+L GR T A+ G T + Q +I
Sbjct: 113 SPITCLITGIPNVGKSTLINTLA--GR-TIAKTGNEPAVTQTQQ----------RIDLGN 159
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKEL----AQYFL 245
NI + DTPG+L P++ + + +LA+TGAI D+ + ++ A+YFL
Sbjct: 160 NIILFDTPGLLWPKVENEDSGYRLAITGAIKDTAIEYDDIAYYAAEYFL 208
>gi|397905566|ref|ZP_10506420.1| 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Caloramator australicus RC3]
gi|397161400|emb|CCJ33754.1| 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Caloramator australicus RC3]
Length = 290
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 113/224 (50%), Gaps = 23/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM R IAD + +D++LE+ DARIP SS + D + + P RI++LNK
Sbjct: 5 WYPGHMVKTKRLIADSLKFIDVVLELLDARIPISSKNPDVDSIIKNKP-----RIILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
+LA P KEWI ++ + ++ + N+ + ++ +++ R
Sbjct: 60 SELADPLITKEWIAYYKNNGISALDIDCISGKNINKIYPLIKEILKDKIERTQQKGIIGR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ ++LGIPNVGKS N +I + ++A+ G +PG TK+ +K+ +
Sbjct: 120 PIRALVLGIPNVGKSTFIN---KIAKKSSAQTGD--------RPGVTKNKQWIKV--NKE 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPGIL P+ D +V LA +I + + EL+ FL
Sbjct: 167 FELLDTPGILWPKFDDEKVALHLAYVKSIKEEILDVVELSIKFL 210
>gi|87118180|ref|ZP_01074079.1| putative GTPase YlqF [Marinomonas sp. MED121]
gi|86165814|gb|EAQ67080.1| putative GTPase YlqF [Marinomonas sp. MED121]
Length = 317
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 117/226 (51%), Gaps = 37/226 (16%)
Query: 32 MAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNKMDLAS 88
M A R I D M VDI++EV DARIP SS+ QLR P + +LNK DLA
Sbjct: 1 MNKARREIEDVMTQVDIVIEVLDARIPDSSQNPMLSQLRGDVPV-----LRLLNKKDLAD 55
Query: 89 PTQFKEWITFFDQQNC----PSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVT 144
T+ + W+T + + P ++ + +VK+++ L H K +
Sbjct: 56 ETRIQTWLTHWQEAESITAKPFSTLDKQDLASVKQWVAKLVPHRGTAEKP--------IR 107
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M+ GIPNVGKS+L N+L +GR R A V +P TK LK++ P +
Sbjct: 108 AMIAGIPNVGKSSLMNAL--LGR---------RVAKVGDEPAVTKAQQKLKVS--PGFVL 154
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELA----QYFLG 246
LDTPGIL P+I + + +LA+TGA+ D+ + +++A +F+G
Sbjct: 155 LDTPGILWPKIENPKASYRLAVTGAVRDTAIDYQDVALVGLDFFIG 200
>gi|399910213|ref|ZP_10778527.1| ribosomal biogenesis GTPase [Halomonas sp. KM-1]
Length = 326
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 106/214 (49%), Gaps = 28/214 (13%)
Query: 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLN 82
GWY HM A R I + +P +D+ +EV DAR+P+SS L H P + +L+
Sbjct: 3 GWYPGHMNKARRQIQEALPEIDVAIEVLDARLPYSSANPMLAGLTRHKPV-----LKILS 57
Query: 83 KMDLASPTQFKEWITFFDQ-QNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSD 141
+ DLA P +EW+ FD + + V + N +K K +R +D D
Sbjct: 58 RADLADPELTREWVEHFDSLPDTRALAVTTTNARELKRIPKLCHELAGQVR-ADRD---- 112
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V VM++GIPNVGKS L N L GK A +P TK ++IA
Sbjct: 113 -VRVMIMGIPNVGKSTLINGL----------AGKA-IAKTGNEPAVTKRQQKVRIAGR-- 158
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFV 235
+ ++DTPG+L P+I D +LA +GAI D+ +
Sbjct: 159 VALIDTPGVLWPKIEDQASAYRLAASGAIRDTAI 192
>gi|258539617|ref|YP_003174116.1| GTP-binding protein [Lactobacillus rhamnosus Lc 705]
gi|385835265|ref|YP_005873039.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
rhamnosus ATCC 8530]
gi|257151293|emb|CAR90265.1| GTP-binding protein [Lactobacillus rhamnosus Lc 705]
gi|355394756|gb|AER64186.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
rhamnosus ATCC 8530]
Length = 285
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 105/215 (48%), Gaps = 29/215 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A + + +++ VD+ILEV DAR P SS D+L P RI++LNK
Sbjct: 5 WFPGHMAKARKQVQEKIKQVDLILEVVDARTPESSRNPMLDELVGDKP-----RIIILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL-----RKSDYDA 138
DLA P EW+ ++ Q + +++ + K + QA + + RK
Sbjct: 60 QDLADPVLTNEWVRYYQTQGFAAIAIDAQ---HAKRLQQIPQAAAKLMAEKIARKKARGI 116
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
+ + M +GIPNVGKS + N L + A +PG TK+ LK +
Sbjct: 117 RNPMIKAMCIGIPNVGKSTVLNRLV-----------RKNIAVTGNKPGVTKNQQWLKASD 165
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDS 233
N +LDTPGIL P+ + +LA TGAI D+
Sbjct: 166 --NFQLLDTPGILWPKFASQTIGMRLAFTGAIADA 198
>gi|326430802|gb|EGD76372.1| hypothetical protein PTSG_01072 [Salpingoeca sp. ATCC 50818]
Length = 388
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 120/243 (49%), Gaps = 26/243 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMAA RA+ + D +LEV DAR+PF Q + + + RIL+LNK DL
Sbjct: 22 WFPGHMAAGLRAMQKNLRRCDCVLEVHDARVPFIGRNPQFKY---LAGTPRILLLNKADL 78
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKS-------DYDAS 139
A Q +E + C G ++ D + QA VR + + D S
Sbjct: 79 APTPQPEEKEAIMHE--CLPNGELVYS-DVLYISCGKKQADVRQVMPAVLKSIGKDVLDS 135
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIAS 198
+ +++ G+PNVGKS+L N+L R A K K A +PG T+ + +KI
Sbjct: 136 RQHLRLLIAGMPNVGKSSLVNTL----RSVLANKRKC--ARTGDRPGVTRTVQQDVKIHD 189
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYF------LGILNFSD 252
P +Y+LDTPG++ P++ + + LA+ G + D VG + +A Y LGI ++ D
Sbjct: 190 DPPVYILDTPGVMIPDLDNQDHAMTLAMLGTLRDELVGEEHVADYLLFSLNQLGIFSYVD 249
Query: 253 EYK 255
Y+
Sbjct: 250 RYR 252
>gi|421768951|ref|ZP_16205660.1| 50S ribosomal subunit maturation GTPase RbgA [Lactobacillus
rhamnosus LRHMDP2]
gi|421771214|ref|ZP_16207874.1| GTP-binding protein [Lactobacillus rhamnosus LRHMDP3]
gi|411185347|gb|EKS52475.1| 50S ribosomal subunit maturation GTPase RbgA [Lactobacillus
rhamnosus LRHMDP2]
gi|411185800|gb|EKS52926.1| GTP-binding protein [Lactobacillus rhamnosus LRHMDP3]
Length = 285
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 105/215 (48%), Gaps = 29/215 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A + + +++ VD+ILEV DAR P SS D+L P RI++LNK
Sbjct: 5 WFPGHMAKARKQVQEKIKQVDLILEVVDARTPESSRNPMLDELVGDKP-----RIIILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL-----RKSDYDA 138
DLA P EW+ ++ Q + +++ + K + QA + + RK
Sbjct: 60 QDLADPVLTNEWVRYYQTQGFAAIAIDAQ---HAKRLQQIPQAAAKLMAEKIARKKARGI 116
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
+ + M +GIPNVGKS + N L + A +PG TK+ LK +
Sbjct: 117 RNPMIKAMCIGIPNVGKSTVLNRLV-----------RKNIAVTGNKPGVTKNQQWLKASD 165
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDS 233
N +LDTPGIL P+ + +LA TGAI D+
Sbjct: 166 --NFQLLDTPGILWPKFASQTIGMRLAFTGAIADA 198
>gi|167768003|ref|ZP_02440056.1| hypothetical protein CLOSS21_02546 [Clostridium sp. SS2/1]
gi|317498403|ref|ZP_07956698.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 5_1_63FAA]
gi|429761259|ref|ZP_19293689.1| ribosome biogenesis GTP-binding protein YlqF [Anaerostipes hadrus
DSM 3319]
gi|167710332|gb|EDS20911.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
SS2/1]
gi|291561005|emb|CBL39805.1| ribosome biogenesis GTP-binding protein YlqF [butyrate-producing
bacterium SSC/2]
gi|316894297|gb|EFV16484.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 5_1_63FAA]
gi|429184283|gb|EKY25306.1| ribosome biogenesis GTP-binding protein YlqF [Anaerostipes hadrus
DSM 3319]
Length = 286
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 118/242 (48%), Gaps = 33/242 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A R + + M L+DI++E+ DARIP SS + DQL ++ R+++LNK
Sbjct: 5 WYPGHMTKAKRMMQENMKLIDIMIELVDARIPLSSRNPDIDQL-----AANKSRLILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD--ASSD 141
D+A +W +F ++ N+ + VK + + + D +
Sbjct: 60 TDMADERVTAQWEEYFKEKGFYVARTNARSGKGVKGTQAIVMDACKEKLERDRKRGIKNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M+ GIPNVGKS NSL +G+ K PG TK +K+ + N
Sbjct: 120 PIRAMIAGIPNVGKSTFINSL--VGKACTKTGNK---------PGVTKGKQWIKL--NKN 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELA--------QYFLGILNFSDE 253
I +LDTPGIL P+ D +V +LAL G+I D + E+A ++ GIL +D
Sbjct: 167 IELLDTPGILWPKFEDQQVGLRLALIGSIRDEILNQDEMAIELIEYLKNHYQGIL--ADR 224
Query: 254 YK 255
Y+
Sbjct: 225 YQ 226
>gi|392971848|ref|ZP_10337240.1| possible GTP-binding protein [Staphylococcus equorum subsp. equorum
Mu2]
gi|403046828|ref|ZP_10902297.1| ribosomal biogenesis GTPase [Staphylococcus sp. OJ82]
gi|392509561|emb|CCI60530.1| possible GTP-binding protein [Staphylococcus equorum subsp. equorum
Mu2]
gi|402763524|gb|EJX17617.1| ribosomal biogenesis GTPase [Staphylococcus sp. OJ82]
Length = 286
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 114/231 (49%), Gaps = 23/231 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++ + VD++ E+ DARIP+SS D++ P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEELKKVDVVFELVDARIPYSSRNPMIDEVIQQKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKF-LQAHVRNLRKSDYDA-SSD 141
D+A+ + +W +F + +++ + +K + ++A K
Sbjct: 60 KDMANLKELVKWENYFKGKGFYPVAIDAKHGKGLKLVEQAAIKATTEKFEKEKQKGLKPR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS L N L A K + PG TK +K+ +
Sbjct: 120 AIRAMIVGIPNVGKSTLINKL--------ANKSVTKTGNT---PGVTKQQQWIKVGK--S 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSD 252
+ +LDTPGIL P+ D V KL++TGAI DS V E+A Y L + D
Sbjct: 167 LQLLDTPGILWPKFEDQLVGKKLSITGAIKDSIVHLDEVAIYGLEFMKAHD 217
>gi|386859876|ref|YP_006272582.1| GTP-binding protein [Borrelia crocidurae str. Achema]
gi|384934757|gb|AFI31430.1| Conserved hypothetical GTP-binding protein [Borrelia crocidurae
str. Achema]
Length = 283
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 119/237 (50%), Gaps = 16/237 (6%)
Query: 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMD 85
W+ HM A I + +I+LE+ DAR PFSS+ + S+ +I++LNK D
Sbjct: 6 NWFPGHMKRALELIQINIKKTNIVLEILDARAPFSSKNPLIETIIKNSNKDKIILLNKSD 65
Query: 86 LASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTV 145
L + +W +F+ N + K K+ + ++ + N +K + + V
Sbjct: 66 LVQEGEILKWKKYFETLGNNVLITNIYKKGIKKQIINNIR-KIANTKK--IKTYKEKIKV 122
Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVL 205
+++G+PNVGKS++ N L +G+ + +V+ +PG TK+I LK+ NI+
Sbjct: 123 LVIGVPNVGKSSIINLL--VGK---------KSTSVANKPGHTKNIQILKVNEDINIF-- 169
Query: 206 DTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262
D PGIL + + E+ KLA+ I + + ELA Y L ++ ++ K K++I
Sbjct: 170 DMPGILWHNLENQEIAKKLAILDMIKNEIIDNTELALYLLKEMHIKNKTKLIGKYNI 226
>gi|312622767|ref|YP_004024380.1| ribosome biogenesis GTP-binding protein ylqf [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203234|gb|ADQ46561.1| ribosome biogenesis GTP-binding protein YlqF [Caldicellulosiruptor
kronotskyensis 2002]
Length = 282
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 112/223 (50%), Gaps = 16/223 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A R I D +D+ L + DAR P SS +QL +I VLNK DL
Sbjct: 5 WYPGHMQKAKREILDLNKYIDLYLILLDARAPLSSRNEQL--ESLIKDKPKIYVLNKSDL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN-LRKSDYDASSDTVTV 145
A T+ +E++ +F + N + ++S NVK LK + +++ + ++ +
Sbjct: 63 ADETKNQEFVKYFQENNQVAVCIDSLKGTNVKNILKIAENLLKDKIEEAKQKGRKKIIRF 122
Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVL 205
+LGIPNVGKS L N +IT + K A +PG T+ +KI + +L
Sbjct: 123 GVLGIPNVGKSTLIN------KITNSAK-----ARTGDRPGVTRAKQWIKINDY--FEML 169
Query: 206 DTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
DTPGIL P++ D V KL G+I + + +A+ +G++
Sbjct: 170 DTPGILVPKLEDDNVAIKLCAIGSIKEDLFDKELVAKKTIGMI 212
>gi|167747196|ref|ZP_02419323.1| hypothetical protein ANACAC_01910 [Anaerostipes caccae DSM 14662]
gi|167654156|gb|EDR98285.1| ribosome biogenesis GTP-binding protein YlqF [Anaerostipes caccae
DSM 14662]
Length = 291
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 109/227 (48%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A R + + + L+DI++E+ DARIPF S + DQL + R+++LNK
Sbjct: 12 WYPGHMTKAKRMMQENIKLIDIVIELVDARIPFGSRNPDIDQL-----AQNKSRLILLNK 66
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD--ASSD 141
DLA + + W +F + VNS VK + R + D +
Sbjct: 67 TDLADSRKTELWEQYFKDRGFFVGKVNSQKGTGVKAVQGIVMEACREKIERDRKRGIKNR 126
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M+ GIPNVGKS NSL GK T +PG TK +K+ + N
Sbjct: 127 PVRAMIAGIPNVGKSTFINSLA----------GKACTKT-GNKPGVTKGKQWIKL--NKN 173
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
I +LDTPGIL P+ D V LAL G+I + + +E+A + L
Sbjct: 174 IELLDTPGILWPKFEDQTVGLHLALIGSIKEEILNQEEMAMELIPFL 220
>gi|404492367|ref|YP_006716473.1| ribosomal biogenesis GTPase [Pelobacter carbinolicus DSM 2380]
gi|77544470|gb|ABA88032.1| ribosomal biogenesis GTPase [Pelobacter carbinolicus DSM 2380]
Length = 280
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 111/222 (50%), Gaps = 28/222 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM +A + IA+ MP +D+++EV DAR+P +S ++R P I VLNK
Sbjct: 4 WFPGHMHSARQQIAEAMPKIDLVIEVLDARLPMASSNPLLAEMRGVKPC-----IKVLNK 58
Query: 84 MDLASPTQFKEWITFFDQ--QNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSD 141
DLA P EW+ FF+ + + +N+ K + ++ ++ V
Sbjct: 59 NDLADPEVTGEWVRFFESRGKGMKALAINATRKAELTRLVRLSRSLV-----PHRGGPGK 113
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ +M++GIPNVGKS L N+L GR + A V +P T+ + + +
Sbjct: 114 PLRIMIVGIPNVGKSTLINTL--CGR---------KIAKVGDKPAITRSAQQVDLRN--G 160
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
I + DTPG+L P + D LA TGAIGD+ + + +A +
Sbjct: 161 ILLFDTPGVLAPNLEDQRGAMCLAATGAIGDNAMDHERIAAF 202
>gi|389575883|ref|ZP_10165911.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium
cellulosolvens 6]
gi|389311368|gb|EIM56301.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium
cellulosolvens 6]
Length = 285
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 110/220 (50%), Gaps = 23/220 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A R + + + L+D+I+E+ DARIPFS +R + R+++LNK DL
Sbjct: 5 WYPGHMTKAKRQMQEDLKLIDLIIELIDARIPFSGRNPDIRTMG--NGKARLIILNKADL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV-----RNLRKSDYDASSD 141
A ++W+ ++ +Q ++ N+ ++K+ +Q RNLR+ +
Sbjct: 63 ADERLNRKWMEYYKEQGAQVMLTDARNRGSLKQIQPLIQEACKEKIERNLRRG---IKNK 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M+ GIPNVGKS NS+ GK T +PG TK + + +
Sbjct: 120 PIRAMVAGIPNVGKSTFINSVS----------GKASTKT-GNKPGVTKGKQWIHL--NKG 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELA 241
+ +LDTPGIL P D E ++A G++ D + +EL+
Sbjct: 167 LDLLDTPGILWPRFDDPEAGVRMAFIGSVNDEILQLEELS 206
>gi|332981642|ref|YP_004463083.1| ribosome biogenesis GTP-binding protein YlqF [Mahella australiensis
50-1 BON]
gi|332699320|gb|AEE96261.1| ribosome biogenesis GTP-binding protein YlqF [Mahella australiensis
50-1 BON]
Length = 277
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 108/225 (48%), Gaps = 28/225 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A + + LVDI++EV D+R P SS D++ H RI+VLNK
Sbjct: 5 WYPGHMARALEDMKKFIRLVDIVIEVVDSRAPISSRDAVLDKMIGHKA-----RIIVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTV 143
DLA W+ + ++ + +N+ + ++ + LK + V N K
Sbjct: 60 ADLADKRAVDTWLKYLKSKDVKAVAINAKSGADISK-LKDIMRSVENQHK-----DRRVK 113
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
M++GIPNVGKS + N+L K R V +PG T+ + K+
Sbjct: 114 NAMIVGIPNVGKSTILNAL-----------AKSRRTQVGARPGITRQVGWFKV---DEFQ 159
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
++DTPGIL P + + V LA GAI D+ V +E+A L IL
Sbjct: 160 IMDTPGILKPNLKNEIVKLHLACIGAIDDAAVDIEEIAVSLLDIL 204
>gi|15895038|ref|NP_348387.1| ribosomal biogenesis GTPase [Clostridium acetobutylicum ATCC 824]
gi|15024731|gb|AAK79727.1|AE007685_3 Predicted GTPase, YLQF B.subtilis ortholog [Clostridium
acetobutylicum ATCC 824]
Length = 283
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 126/248 (50%), Gaps = 27/248 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA TR I + + LVD ++E+RDARI +SS + + + P RI++LNK
Sbjct: 8 WFPGHMAKTTREIRENLKLVDAVIEIRDARIVYSSSNPDINSICKDKP-----RIILLNK 62
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNS---HNKDNVKEFL-KFLQAHVRNLRKSDYDAS 139
DLA + W+ ++ + VN+ +++K L + L+ + N+ +
Sbjct: 63 FDLAEKSITDNWVKALSSESIRAIPVNALEGRGLNSIKPALNELLKPKLDNM--AAKGIQ 120
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ + VM++GIPNVGKS+ N + K + A V +PG TK +K ++
Sbjct: 121 NYIIRVMVVGIPNVGKSSFINKM-----------AKNKVAKVGNKPGVTKSKQWIK--TN 167
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAK 259
I ++DTPG+L P+ D +V LA TGAI D + +ELA + L + K +
Sbjct: 168 IGIELMDTPGVLWPKFQDQKVGLNLAFTGAIKDEIMDIEELALKLVQFLQKNYPEKLMER 227
Query: 260 FSINQINK 267
+ + IN+
Sbjct: 228 YKLEDINE 235
>gi|452822796|gb|EME29812.1| GTP-binding protein [Galdieria sulphuraria]
Length = 319
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 113/237 (47%), Gaps = 22/237 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM A+R I +++ L DII+EVRDARIP +S + P + RI++LNK DL
Sbjct: 14 WFPGHMYKASREIKEKLALADIIIEVRDARIPLTSAAVAEVSQLPSRTIPRIILLNKADL 73
Query: 87 ASPTQFKEWITFFDQQNCPS-------FGVNSHNKDNVKEFLKFLQA-HVRNLRKSDYDA 138
+ P + + + S F ++++ L L A VR K
Sbjct: 74 SEPLLLSKAMCRLAKGGLKSSYCSILPFSCKQVQRNHISSVLDTLAAVPVRKRLK----- 128
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRH-------ATVSPQPGETKDI 191
S V+++G+PNVGKS+ N L + R + + H A V PG TK++
Sbjct: 129 -SLPTKVIVIGVPNVGKSSFINLLQRHCR-NQWKDIPVEHTIDDGGVAKVGKHPGVTKNV 186
Query: 192 YSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
++ P IY+LD+PG++ P + E KL +TG I D V Q+ L +L
Sbjct: 187 AGFVVSHQPYIYMLDSPGVMYPRLDSWESGMKLIITGCIRDQSVDSIAACQFLLNML 243
>gi|336126178|ref|YP_004578134.1| GTP-binding protein [Vibrio anguillarum 775]
gi|335343895|gb|AEH35177.1| GTP-binding protein [Vibrio anguillarum 775]
Length = 314
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 123/243 (50%), Gaps = 27/243 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + I + +P VD+I+EV DARIPFSSE LR + P + VLNK
Sbjct: 8 WFPGHMHKARKEIEEVIPQVDVIIEVLDARIPFSSENPLISHLRGNKPC-----VKVLNK 62
Query: 84 MDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + WI F+ +Q + V + N V + ++ R L + +
Sbjct: 63 RDLADPEMTQLWIDHFEKEQGVKAMAVTTSNPQEVHKIMEL----CRKLAPHREEVGKNI 118
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
T M++GIPNVGKS + N+L GR A+ G QP T+ + + + I
Sbjct: 119 RT-MIMGIPNVGKSTIINTL--AGR-AVAQTGN--------QPAVTRRQQRINLQN--GI 164
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262
+ DTPGIL P++ + +LA TGA+ D+ + +++A Y + L + + ++ I
Sbjct: 165 VLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYEDVAFYTVEYLAQAYPERLQERYQI 224
Query: 263 NQI 265
+++
Sbjct: 225 DEL 227
>gi|71066536|ref|YP_265263.1| ribosomal biogenesis GTPase [Psychrobacter arcticus 273-4]
gi|71039521|gb|AAZ19829.1| Ras superfamily GTP-binding protein YlqF [Psychrobacter arcticus
273-4]
Length = 318
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 108/221 (48%), Gaps = 27/221 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A I + MP +D+++EV DARIP+SSE LR P I +LNK
Sbjct: 9 WFPGHMNKARNEIKEIMPQMDVVIEVIDARIPYSSENPMVAALRGEKPV-----IKILNK 63
Query: 84 MDLASPTQFKEWITFFDQQN-CPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + W+ + +QQN + ++ ++VK + + V N +
Sbjct: 64 ADLADPELTQAWMDYLEQQNGVKAIACDTDKANDVKRIIAICKQLVPN-----KVGTGRQ 118
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS L N+L GR A +P TK +K+ +I
Sbjct: 119 IKAMIMGIPNVGKSTLINTLA--GRAV---------ARTGDEPAVTKSQQLIKL--DDDI 165
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
+ DTPG+L P++ + +LA TG I D+ ++A Y
Sbjct: 166 MLYDTPGMLWPKVENENSGYRLAATGGIRDTAFDFADVASY 206
>gi|27366530|ref|NP_762057.1| GTPase YlqF [Vibrio vulnificus CMCP6]
gi|27358096|gb|AAO07047.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio vulnificus
CMCP6]
Length = 314
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 111/226 (49%), Gaps = 27/226 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + IA+ +P +D+I+EV DARIPFSSE ++R P + VLNK
Sbjct: 8 WFPGHMHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPLISKIRGEKPV-----VKVLNK 62
Query: 84 MDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + WI + +QN + + + V + L+ R L + +
Sbjct: 63 RDLADPELTELWIEHLEKEQNVKAMAITTSQTQEVHKILEL----CRKLAPHREEVGKN- 117
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS + N+L GR A QP T+ +I I
Sbjct: 118 IRTMIMGIPNVGKSTIINTL--AGRAI---------AQTGNQPAVTR--RQQRINLQNGI 164
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ DTPGIL P++ + +LA TGA+ D+ + E+A Y + L
Sbjct: 165 VLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYL 210
>gi|227499924|ref|ZP_03930017.1| GTP-binding protein [Anaerococcus tetradius ATCC 35098]
gi|227218033|gb|EEI83306.1| GTP-binding protein [Anaerococcus tetradius ATCC 35098]
Length = 280
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 24/224 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM I D + LVD++LE+ D+RIP SS D++ P RI+++NK
Sbjct: 7 WFPGHMKKTKEIIIDNLKLVDVVLEIIDSRIPISSRNPMIDEIIADKP-----RIIIMNK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT- 142
DL+ P K+WI F ++ P+ +NS V K + +++ K + + + D
Sbjct: 62 SDLSDPEVNKKWIAKFKEEGIPAILMNSKENVPVDRIYKEAKILLKDKFKKNEEKNIDNP 121
Query: 143 -VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ +M++G+PN GKS N L K + A V +PG T+ +K S N
Sbjct: 122 LIRMMIVGVPNSGKSTFINKL-----------SKKKGAKVGNRPGITQSKQWIKAGS--N 168
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
I +LDTPGIL P+ + ++ L+ T AI D + ++L FL
Sbjct: 169 IQLLDTPGILWPKFEE-KIGLHLSFTNAIRDEVLNIEDLTLKFL 211
>gi|359439776|ref|ZP_09229708.1| ribosome biogenesis GTPase A [Pseudoalteromonas sp. BSi20429]
gi|358038380|dbj|GAA65957.1| ribosome biogenesis GTPase A [Pseudoalteromonas sp. BSi20429]
Length = 314
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 109/227 (48%), Gaps = 39/227 (17%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A I + MP +D+I+EV DARIP+SSE LR P I +LNK
Sbjct: 5 WFPGHMNKARNEIKEIMPQMDVIIEVLDARIPYSSENPMVATLREGKPV-----IKILNK 59
Query: 84 MDLASPTQFKEWITFFDQQN---CPSFGVNSHNK----DNVKEFLKFLQAHVRNLRKSDY 136
DLA P + W +F+Q+N SFG H+K + E K L H K
Sbjct: 60 ADLADPKMTQIWKDYFEQENGVKAISFG---HDKAAEVSRINELCKKLVPHKVGADKQ-- 114
Query: 137 DASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI 196
+ M++GIPNVGKS L N L GRI A +P TK +K+
Sbjct: 115 ------IKAMIMGIPNVGKSTLINVLA--GRIV---------AKTGNEPAVTKAQQRIKL 157
Query: 197 ASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
I + DTPG+L P++ + +L TGAI D+ + +E+A Y
Sbjct: 158 ED--GIMLYDTPGMLWPKVENENSGYRLGATGAIRDTALEYEEVASY 202
>gi|317473603|ref|ZP_07932892.1| ribosome biogenesis GTP-binding protein YlqF [Anaerostipes sp.
3_2_56FAA]
gi|316898893|gb|EFV20918.1| ribosome biogenesis GTP-binding protein YlqF [Anaerostipes sp.
3_2_56FAA]
Length = 284
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 109/227 (48%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A R + + + L+DI++E+ DARIPF S + DQL + R+++LNK
Sbjct: 5 WYPGHMTKAKRMMQENIKLIDIVIELVDARIPFGSRNPDIDQLAQNKS-----RLILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD--ASSD 141
DLA + + W +F + VNS VK + R + D +
Sbjct: 60 TDLADSRKTELWEQYFKDRGFFVGKVNSQKGTGVKAVQGIVMEACREKIERDRKRGIKNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M+ GIPNVGKS NSL GK T +PG TK +K+ + N
Sbjct: 120 PVRAMIAGIPNVGKSTFINSLA----------GKACTKT-GNKPGVTKGKQWIKL--NKN 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
I +LDTPGIL P+ D V LAL G+I + + +E+A + L
Sbjct: 167 IELLDTPGILWPKFEDQTVGLHLALIGSIKEEILNQEEMAMELIPFL 213
>gi|385330377|ref|YP_005884328.1| GTP-binding protein, ribosome biogenesis, YlqF [Marinobacter
adhaerens HP15]
gi|311693527|gb|ADP96400.1| GTP-binding protein, ribosome biogenesis, YlqF [Marinobacter
adhaerens HP15]
Length = 312
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 115/220 (52%), Gaps = 25/220 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + I MP +D+I+EV DARIPFSSE LR P I VLNK
Sbjct: 5 WFPGHMHKARKEIKKVMPQMDLIIEVVDARIPFSSENPLVPALRGDTPL-----IKVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTV 143
DLA P ++W+ + +++ +HN+ N E L L+ + +D +
Sbjct: 60 RDLADPEITEQWLAWIEKERGVRAITLTHNQRN--EALSILK--LAEEMTPGHDRQKSAL 115
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
VM+LGIPNVGKS L N+L GR AA+ G +P T+ ++K+ + NI
Sbjct: 116 RVMILGIPNVGKSTLINTLA--GR-PAAKTGN--------EPAVTRAQQAIKLPN--NIL 162
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
+ DTPG L P++ +LA+TGAI + + +++A +
Sbjct: 163 LYDTPGFLWPKLSPEACGYRLAVTGAIRSAVLDFEDVAMF 202
>gi|350402770|ref|XP_003486596.1| PREDICTED: mitochondrial GTPase 1-like isoform 1 [Bombus impatiens]
Length = 322
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 121/244 (49%), Gaps = 16/244 (6%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM + + ++ VD I+EV DARIP S + N I VLNKMDL
Sbjct: 25 WFPGHMGKGLKNMQKQLKNVDCIIEVHDARIPVSGHYADYSNTLT-GLKPHIFVLNKMDL 83
Query: 87 ASPTQFKEWIT-FFDQQNCPSFGVNSHNK---DNVKEFLKFLQAHVRNLRKSDYDASSDT 142
A +FK I +Q+ + S + KE L Q ++ + + A +
Sbjct: 84 AD-MKFKNSIVENLNQKGLSNILFTSFRNVKCEGAKELLPLAQKLIKESNRHN-RAHESS 141
Query: 143 VTVMLLGIPNVGKSALANSL-HQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHP 200
+M++G+PNVGKS+L N L + I R ++A V G T+ + + +K++ P
Sbjct: 142 FQIMIIGVPNVGKSSLINRLRNNILRKSSA-------VPVGGIAGITRSVSTRVKVSEKP 194
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKF 260
+IYVLDTPGIL P++ ++ KLAL G + D +G + LA + L LN ++ K
Sbjct: 195 DIYVLDTPGILTPKVDNMHTGLKLALVGCMQDHLIGPEILADFLLFWLNKQKRFEYVEKL 254
Query: 261 SINQ 264
+ +
Sbjct: 255 ELRE 258
>gi|319937634|ref|ZP_08012038.1| ribosomal biogenesis GTPase [Coprobacillus sp. 29_1]
gi|319807276|gb|EFW03888.1| ribosomal biogenesis GTPase [Coprobacillus sp. 29_1]
Length = 300
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 119/236 (50%), Gaps = 31/236 (13%)
Query: 22 KKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRI 78
K G W+ HMA A R I++RM ++DI++E+ D+R P+SS+ + + N P R+
Sbjct: 12 KSGINWFPGHMAKARREISERMKVIDIVIELVDSRAPYSSKNPMLNDIINQKP-----RL 66
Query: 79 LVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLR-KSDYD 137
+VL K D++ + K+W+ +++ + VN N E+ K ++ + L+ K D +
Sbjct: 67 IVLTKKDMSDDEKTKQWVHYYESIGYQAMSVNLK---NFNEYQKIIEKCRKVLKPKMDKE 123
Query: 138 ASSD----TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVS-PQPGETKDIY 192
+ + M+LGIPNVGKS N L R ATV+ +PG TK
Sbjct: 124 KARGIKPRAIRAMVLGIPNVGKSTFINKLAN------------RKATVTGNKPGVTKAQQ 171
Query: 193 SLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+++A ++ DTPG+L P+ D + +AL G+I + +L Y + L
Sbjct: 172 IIRVAKDFELF--DTPGVLWPKFEDEHIARNIALLGSIKQDILPLDDLFVYVMTYL 225
>gi|210622539|ref|ZP_03293232.1| hypothetical protein CLOHIR_01180 [Clostridium hiranonis DSM 13275]
gi|210154174|gb|EEA85180.1| hypothetical protein CLOHIR_01180 [Clostridium hiranonis DSM 13275]
Length = 297
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 120/244 (49%), Gaps = 23/244 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM + + LVD+++E+ D+RIP+SS + D L P R+++LNK
Sbjct: 18 WYPGHMKKTKDLMKANLKLVDVVVELLDSRIPYSSKNPDIDTLMAGKP-----RVVLLNK 72
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKS--DYDASSD 141
D++ + +WI ++ +Q + +++ V + + V++ S +
Sbjct: 73 SDISDRAKLNKWINYYKEQGIKAIPIDAMKGTGVNRIVDECKNAVKDKMDSLKEKGRKER 132
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ +M++G+PNVGKS+L N L GR R +PG TK +K+ N
Sbjct: 133 AIRIMIVGVPNVGKSSLINKLT--GR---------RSTQTGDRPGVTKGKQWVKL--RGN 179
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
+ +LDTPGIL P+ D +V LA T AI D + + LA + L + K A++
Sbjct: 180 LELLDTPGILWPKFEDQDVALNLAFTRAIKDEILDVETLALRLIEKLMVIEPEKLAARYK 239
Query: 262 INQI 265
++++
Sbjct: 240 LDEL 243
>gi|94499432|ref|ZP_01305969.1| putative GTPase YlqF [Bermanella marisrubri]
gi|94428186|gb|EAT13159.1| putative GTPase YlqF [Oceanobacter sp. RED65]
Length = 302
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 27/221 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + I + + +D+++EV DAR+P+SSE L P + +LNK
Sbjct: 5 WFPGHMHRARKQILETIANIDLVIEVLDARLPYSSENPIIPDLLKDRPC-----LKLLNK 59
Query: 84 MDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + W+ +F+ ++N + + +K VK ++ + R+ S +
Sbjct: 60 TDLADPELTQVWLDYFNSRENTRAIALTGLDKKQVKRITQYCHEMLPERRE-----SKKS 114
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS L N+L GR T A+ G L T PQ +I + I
Sbjct: 115 IRTMIVGIPNVGKSTLINTLA--GR-TVAKAGNLPALTRHPQ----------QIKINDGI 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
+ DTPGIL P+IH+V+ +LA +GA+ D+ + E+A++
Sbjct: 162 VLSDTPGILWPKIHNVKSGFRLAASGAVRDTALDYFEVAEF 202
>gi|428222409|ref|YP_007106579.1| ribosome biogenesis GTP-binding protein YlqF [Synechococcus sp. PCC
7502]
gi|427995749|gb|AFY74444.1| ribosome biogenesis GTP-binding protein YlqF [Synechococcus sp. PCC
7502]
Length = 286
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 113/209 (54%), Gaps = 17/209 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H+A A +A+++++ VD+++EVRDARIP +S ++ S +LV+N++D+
Sbjct: 13 WYPGHIAKAEKALSEQLKRVDVVIEVRDARIPIASTHPKIATWTEGRS--HLLVMNRLDM 70
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ-AHVR-NLRKSDYDASSDTVT 144
S K+ +F+QQ F N+ + D +K+ LK Q A +R N R+ V
Sbjct: 71 ISGLHQKQLQRWFNQQEQEVFFTNAKDGDGIKQLLKAAQVAGIRVNERRHSRGMLPRPVR 130
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
++G PNVGKSAL N L + R R A S +PG T+ + ++I+ I +
Sbjct: 131 AAVIGFPNVGKSALINRL--LNR---------RVAESSNRPGVTRQLRWIRISD--AIEL 177
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDS 233
LDTPG LP + D + KLA+ IG +
Sbjct: 178 LDTPGNLPSLLGDQDAAVKLAICDDIGQA 206
>gi|295696076|ref|YP_003589314.1| ribosome biogenesis GTP-binding protein YlqF [Kyrpidia tusciae DSM
2912]
gi|295411678|gb|ADG06170.1| ribosome biogenesis GTP-binding protein YlqF [Kyrpidia tusciae DSM
2912]
Length = 290
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 115/234 (49%), Gaps = 31/234 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +A + VD++LE+ DARIP +S +L P R++V+ +
Sbjct: 5 WYPGHMAKARREVATAIRWVDVVLELVDARIPSASRNPVLGELIGDKP-----RLIVMTR 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL------RKSDYD 137
DLA P + WI FF +Q + V++ + L+ + VR L R
Sbjct: 60 DDLADPDVSRRWIGFFARQGGRAVAVDARSGRG----LRGIGGAVRELAAPSVERWKKRG 115
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ V V++LGIPNVGKS+L N L GR +AA+ G L T + Q T + + L
Sbjct: 116 VRNRGVRVLILGIPNVGKSSLINRLA--GR-SAAKTGDLPGVTRAQQWIRTSEGFEL--- 169
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFS 251
LDTPGIL P+ D E LA TGAI + + +++A + L +
Sbjct: 170 -------LDTPGILWPKFEDPETGLLLAATGAIKEEILPLEDVAVFLFKRLQLT 216
>gi|291563276|emb|CBL42092.1| ribosome biogenesis GTP-binding protein YlqF [butyrate-producing
bacterium SS3/4]
Length = 287
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 108/220 (49%), Gaps = 23/220 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A RA+ + + LVD+++E+ DAR P +S + D L + R+++LNK
Sbjct: 5 WYPGHMTKAKRAMKEDVKLVDLVIELVDARAPLASRNPDIDSL-----AAGKGRVILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DLAS WIT+F+ Q +++ K +K+ +Q + + D +
Sbjct: 60 ADLASEKANAAWITYFESQGFQVMKIDARAKATLKQLNALIQEACKEKIERDRRRGILNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M++GIPNVGKS NS GK A +PG TK +++ +
Sbjct: 120 PVRAMVVGIPNVGKSTFINSFA----------GKA-AAKTGNKPGVTKGNQWIRL--NKQ 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELA 241
+ +LDTPGIL P+ D V LA G+I D + ELA
Sbjct: 167 VELLDTPGILWPKFEDQRVGLLLAFLGSINDEILEKDELA 206
>gi|335049776|ref|ZP_08542762.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera sp. UPII
199-6]
gi|333762271|gb|EGL39775.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera sp. UPII
199-6]
Length = 287
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 127/260 (48%), Gaps = 46/260 (17%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R I + + ++D+++E+ DARIP+SS L + P ++VLNK
Sbjct: 5 WYPGHMAKAKRLIQEHLKMIDVVVELVDARIPWSSTNPMIGTLIGNKP-----SVVVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ-------AHVRNLRKSDY 136
DLA + + WI ++++ +NS + K+ + ++ AH R
Sbjct: 60 ADLADAAEVQAWIQQYEREGRQVVALNSKEGKSGKKLVAVIRRLAAPKLAHWRQ-----R 114
Query: 137 DASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI 196
+ +V M+LGIPNVGKS L N L GR A + +PGETK + +
Sbjct: 115 GLKNRSVRTMILGIPNVGKSTLINRLA--GRNV---------AKTADKPGETKGKQWVHL 163
Query: 197 ASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKK 256
+ ++ LDTPG+L P++ + +LA TGAI D+ + + +L E ++
Sbjct: 164 GEYLDL--LDTPGVLWPKLENQVSAYRLAATGAISDTVFDRQTV------VLQLLAELRQ 215
Query: 257 W------AKFSINQI-NKPL 269
W +FS+ Q+ + PL
Sbjct: 216 WYPQELQRRFSLEQLGDTPL 235
>gi|395240791|ref|ZP_10417815.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
gigeriorum CRBIP 24.85]
gi|394475573|emb|CCI87792.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
gigeriorum CRBIP 24.85]
Length = 279
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 123/252 (48%), Gaps = 28/252 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + D++ L+D+I+EV DARIP +S +L P I++LNK
Sbjct: 6 WYPGHMNKARNQLEDKLNLIDVIVEVLDARIPQASRNPMIGELVGQKP-----HIVILNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDASSD 141
DLA P K W + ++S + N++ + ++ + + D A +
Sbjct: 61 ADLADPVLTKFWQKELQKTANYVIAMDSLHNTNMQGLIHLIKKAGSAKTKKFEDKGAVNP 120
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
T+ + GIPN GKS + N L +GR A V +PG TK LK S N
Sbjct: 121 TIRIAFAGIPNCGKSTIINRL--VGR---------NVAEVGNKPGVTKGQTWLKTKS--N 167
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKWA- 258
I +LDTPGIL P+ D +V KLA GAI D+ ++A + L +L + ++ K+A
Sbjct: 168 IQILDTPGILWPKFDDQQVGYKLAAFGAIKDTVFHADDVALFVLELLRKYYLNDLIKFAR 227
Query: 259 --KFSINQINKP 268
K + QI+ P
Sbjct: 228 SNKEELEQISNP 239
>gi|257061869|ref|YP_003139757.1| ribosomal biogenesis GTPase [Cyanothece sp. PCC 8802]
gi|256592035|gb|ACV02922.1| GTP-binding protein HSR1-related [Cyanothece sp. PCC 8802]
Length = 281
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 119/231 (51%), Gaps = 31/231 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H++ A R + +++ VD++LEV DARIP +S HHP RILV+
Sbjct: 6 WYPGHISKAERQLKEQLNRVDVVLEVLDARIPLAS-------HHPQIPQWIGQKPRILVI 58
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDAS 139
N++D+ ++W+++F N + N+ VK LK Q N R+ D
Sbjct: 59 NRVDMIPDFVRQQWLSWFTHNNETPYFTNAKQGTGVKAILKAAQQTGVAMNQRRHDRGMR 118
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGR--ITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
V +++G+PNVGKSAL N L +GR + +A + G T+ + ++I+
Sbjct: 119 PRPVRAVVIGMPNVGKSALINRL--LGRKIVESARRA-----------GVTRQLRWVRIS 165
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
I +LD+PG++P ++ + + +KLA+ IG++ +E+A + +L
Sbjct: 166 EA--IELLDSPGVIPGKLENQKDAAKLAICEDIGEAAYDNQEMAAILVDLL 214
>gi|261250990|ref|ZP_05943564.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio orientalis CIP
102891 = ATCC 33934]
gi|417955274|ref|ZP_12598294.1| GTPase YlqF [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|260937863|gb|EEX93851.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio orientalis CIP
102891 = ATCC 33934]
gi|342813330|gb|EGU48301.1| GTPase YlqF [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 311
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 113/226 (50%), Gaps = 27/226 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + IA+ +P +D+I+EV DARIPFSSE +L+ P + VLNK
Sbjct: 5 WFPGHMHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMIAELKGDKPV-----VKVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQ-NCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + WI F+++ N + + + + V ++ VR L + +
Sbjct: 60 RDLADPELTQLWIDHFEKEHNVKAIAITTSQQQEVNRIMEL----VRKLAPHREEIGKNI 115
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
T M++GIPNVGKS + N+L GR A QP T+ +I I
Sbjct: 116 RT-MIMGIPNVGKSTIINALA--GRTI---------AVTGNQPAVTR--RQQRINLQNGI 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ DTPGIL P++ + +LA TGA+ D+ + E+A Y + L
Sbjct: 162 VLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYL 207
>gi|72025788|ref|XP_793548.1| PREDICTED: mitochondrial GTPase 1-like [Strongylocentrotus
purpuratus]
Length = 301
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 118/244 (48%), Gaps = 34/244 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA + + + M VD ++EV DAR+PF+ R F +L+LNK DL
Sbjct: 21 WFPSHMARSMKKMQGSMKKVDCVVEVHDARLPFAGRNPAFRE--TFGIKPHLLILNKKDL 78
Query: 87 ASPTQFK------------EWITFFD--QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLR 132
A E + F + QQN PS K V + ++ R R
Sbjct: 79 ADTASSNDIRKRLQEEGGIEHVMFTNCVQQNSPS------AKKIVPTVIDIIEGGERFNR 132
Query: 133 KSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY 192
+ + S +M++GIPNVGKS+L N+L +I ++GK V PG T+ +
Sbjct: 133 TENQEYS-----IMVVGIPNVGKSSLINALRRI----HVKRGK--GTKVGRLPGVTRSLM 181
Query: 193 S-LKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFS 251
+ ++ P +++ DTPGI P I +VEV KLA+ G + D VG + +A Y L LN
Sbjct: 182 QKILVSEQPRMWLFDTPGITTPFIQNVEVGMKLAMMGTLQDHMVGTELIADYVLFTLNRL 241
Query: 252 DEYK 255
+++
Sbjct: 242 QKFR 245
>gi|403357291|gb|EJY78272.1| GTPase, putative [Oxytricha trifallax]
Length = 307
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 119/248 (47%), Gaps = 22/248 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM A + D + D+ +EVRDARIP++S +L+N+ P +R++V NKMDL
Sbjct: 19 WFPGHMKKAMLGLEDELKKADLFIEVRDARIPYTSYNSELQNYIP-QKMKRLVVFNKMDL 77
Query: 87 ASPTQFKEWITFFDQ---------QNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD 137
A+ + I Q Q + +++ NV++ L+F+ K +
Sbjct: 78 ANEKKTLSIIKDIQQKHLEQNKNAQPLETIHLSTKKNVNVQKLLQFV--------KQNIS 129
Query: 138 ASSDTVT--VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLK 195
TV +M+ GIPNVGKS + NSL + A+ + A V P TK I K
Sbjct: 130 PQFKTVGAWIMIGGIPNVGKSTIINSLRKKDEDLASRSDR-SGAKVGGIPCITKSITGFK 188
Query: 196 IASHPNIYVLDTPGILPPEIHD-VEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
I S P Y++DTPGI+ P++ + E KL I D V + + Y L LN +
Sbjct: 189 IISDPPTYIMDTPGIIQPKLRENSEDGLKLCACNNIRDGIVELENVCDYILWKLNKEGVF 248
Query: 255 KKWAKFSI 262
+F++
Sbjct: 249 AYVNRFNL 256
>gi|260588680|ref|ZP_05854593.1| ribosome biogenesis GTP-binding protein YlqF [Blautia hansenii DSM
20583]
gi|331081971|ref|ZP_08331099.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 6_1_63FAA]
gi|260541155|gb|EEX21724.1| ribosome biogenesis GTP-binding protein YlqF [Blautia hansenii DSM
20583]
gi|330405566|gb|EGG85096.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 6_1_63FAA]
Length = 281
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 108/211 (51%), Gaps = 23/211 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A R + + + L+D+I+EV DARIPFSS + D+L + R+++LNK
Sbjct: 5 WYPGHMTKAKRMMQENIKLIDLIIEVVDARIPFSSRNPDIDELGKNKA-----RLILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DLA + ++W +F + +N+ + +K L + + + D +
Sbjct: 60 SDLADERENEKWAEYFKSKGYYVVKLNAKSGAGIKGVLPVVMESCKEKLERDRKRGIINR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M++GIPNVGKS N+ GK T +PG TK ++I + N
Sbjct: 120 PIRAMVVGIPNVGKSTFINAFA----------GKACTKT-GNKPGVTKGKQWIRI--NKN 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGD 232
+ +LDTPGIL P+ D V +KLA+ G+I D
Sbjct: 167 VELLDTPGILWPKFEDQSVGAKLAMVGSIKD 197
>gi|417752384|ref|ZP_12400594.1| ribosome biogenesis GTP-binding protein YlqF, partial
[Streptococcus dysgalactiae subsp. equisimilis SK1249]
gi|333771839|gb|EGL48742.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
Length = 267
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 109/213 (51%), Gaps = 21/213 (9%)
Query: 37 RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWI 96
R + + + VD + + DAR+P SS+ L ++++LNK DLA T+ KEW
Sbjct: 1 RQVQENLKHVDFVTILVDARLPLSSQNPML--TKIVGDKPKLMILNKADLADATRTKEWK 58
Query: 97 TFFDQQNCPSFGVNSHNKDNVK---EFLKFLQA-HVRNLRKSDYDASSDTVTVMLLGIPN 152
+++ Q + +NS + VK E K L A ++ LR D +T+ M++GIPN
Sbjct: 59 AYYESQGIKTLAINSKEQSTVKKVTEAAKELMADKIKRLR--DRGIQKETLRTMIIGIPN 116
Query: 153 VGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP 212
GKS L N L GK + A V +PG TK LK S+ + +LDTPGIL
Sbjct: 117 AGKSTLMNRLA----------GK-KIAVVGNKPGVTKGQQWLK--SNKELEILDTPGILW 163
Query: 213 PEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
P+ D V KLALTGAI D + E+ + L
Sbjct: 164 PKFEDELVGLKLALTGAIKDQLLPMDEVTIFGL 196
>gi|334705475|ref|ZP_08521341.1| GTPase YlqF [Aeromonas caviae Ae398]
Length = 316
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 111/221 (50%), Gaps = 27/221 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + IA+ MP VD+I+E+ DARIPFSSE +LR P I VLNK
Sbjct: 5 WFPGHMHKARKEIAEVMPQVDVIIEMLDARIPFSSENPLVPELRGETPV-----IKVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQN-CPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + W+ +Q+ + + + +K+ L L + +++
Sbjct: 60 ADLADPEITELWVAHMEQEKGIKALPLTQQEPEKIKQLLTLCHEM---LPERNFELRG-- 114
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
V M++GIPNVGKS L N+L GRI A + G TK +K+ +H +
Sbjct: 115 VRAMIMGIPNVGKSTLINTLA--GRII---------AKTGNEAGVTKSQQRIKLDNH--V 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
+ DTPG L P+++ +LA+T AI D+ ++A +
Sbjct: 162 ILTDTPGFLWPKLNPPSCGYRLAITAAIKDTVFDYADIAMF 202
>gi|363888720|ref|ZP_09316098.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium CM5]
gi|361967341|gb|EHL20163.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium CM5]
Length = 285
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 121/254 (47%), Gaps = 30/254 (11%)
Query: 19 VSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSS 75
+ +K WY HM I + LV++++E+ DAR P SS + D + N
Sbjct: 1 MEEKNSINWYPGHMKKTREEIVKNIKLVNLVVEIVDARAPISSKNPDIDSMIN-----GK 55
Query: 76 RRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFL-QAHVRNLRKS 134
+++VL K DLA ++I+++ ++ S VN+ K + + + L Q N +K+
Sbjct: 56 SKLVVLTKKDLADEENIGKFISYYKEKGIKSVAVNATKKSGISQLINILEQIKEENYQKN 115
Query: 135 DYDAS-SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS 193
+ +M++GIPNVGKS L N + IG+ + A PG TK
Sbjct: 116 KAKGIIKKPLRIMIVGIPNVGKSTLINQI--IGK---------KSAKTGNMPGITKSQQW 164
Query: 194 LKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDE 253
LKI +I +LDTPGIL P+I D KLA G+I D + E+ + + F E
Sbjct: 165 LKIKG--DIELLDTPGILWPKIEDKFTAQKLAFLGSIRDQVI---EIEDIYYEFIKFLIE 219
Query: 254 YKK----WAKFSIN 263
KK + +F IN
Sbjct: 220 NKKQKNLFEEFEIN 233
>gi|119491444|ref|ZP_01623463.1| GTP-binding protein [Lyngbya sp. PCC 8106]
gi|119453439|gb|EAW34602.1| GTP-binding protein [Lyngbya sp. PCC 8106]
Length = 277
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 125/263 (47%), Gaps = 32/263 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A R + +++ VD++LEVRDARIP ++ HHP S ++LV+
Sbjct: 5 WYPGHIAKAERNLQEQLKRVDVVLEVRDARIPLTT-------HHPQVPQWVGSKAKVLVI 57
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ---AHVRNLRKSDYDA 138
N+MD+ S ++W +F +Q + NS V E K + V R+S
Sbjct: 58 NRMDMISLEVKQQWEDWFMEQGETPYFTNSQKGQGVAEVAKAARKVGVEVNQKRRS-RGM 116
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
V +++G PNVGKSAL N L + + +A + G T+ + ++I+
Sbjct: 117 LPRPVRAVVMGFPNVGKSALINRLLKRKVVDSARRA-----------GVTRSLRWVRISD 165
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY---FLGILNFSDEYK 255
I +LD PG++P I++ E KLA+ IG++ +E+A FL L +
Sbjct: 166 Q--IELLDAPGVIPARINNEEKALKLAVCEDIGEASYENQEVAAALVEFLLDLGLESKLG 223
Query: 256 KWAKFSINQINKPLTLHHKADQS 278
F+ + I + LH A S
Sbjct: 224 DRYNFTPDNITGEVYLHQLASHS 246
>gi|363895220|ref|ZP_09322240.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium ACC19a]
gi|361959977|gb|EHL13238.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium ACC19a]
Length = 285
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 121/254 (47%), Gaps = 30/254 (11%)
Query: 19 VSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSS 75
+ +K WY HM I + LV++++E+ DAR P SS + D + N
Sbjct: 1 MEEKNSINWYPGHMKKTREEIVKNIKLVNLVVEIVDARAPISSKNPDIDSMIN-----GK 55
Query: 76 RRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFL-QAHVRNLRKS 134
+++VL K DLA ++I+++ ++ S VN+ K + + + L Q N +K+
Sbjct: 56 SKLVVLTKKDLADEENIGKFISYYKEKGIKSVAVNATKKSGISQLINILEQIKEENYQKN 115
Query: 135 DYDAS-SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS 193
+ +M++GIPNVGKS L N + IG+ + A PG TK
Sbjct: 116 KAKGIIKKPLRIMIVGIPNVGKSTLINQI--IGK---------KSAKTGNMPGITKSQQW 164
Query: 194 LKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDE 253
LKI +I +LDTPGIL P+I D KLA G+I D + E+ + + F E
Sbjct: 165 LKIKG--DIELLDTPGILWPKIEDKFTAQKLAFLGSIRDQVI---EIEDIYYEFIKFLIE 219
Query: 254 YKK----WAKFSIN 263
KK + +F IN
Sbjct: 220 NKKQKNLFEEFKIN 233
>gi|358451363|ref|ZP_09161797.1| GTPase YlqF [Marinobacter manganoxydans MnI7-9]
gi|357224596|gb|EHJ03127.1| GTPase YlqF [Marinobacter manganoxydans MnI7-9]
Length = 289
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 115/220 (52%), Gaps = 25/220 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + I MP +D+I+EV DARIPFSSE LR P I VLNK
Sbjct: 5 WFPGHMHKARKEIKKVMPQMDLIIEVVDARIPFSSENPLVPALRGDTPL-----IKVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTV 143
DLA P ++W+ + +++ +HN+ N E L L+ + +D +
Sbjct: 60 RDLADPEITEQWLAWLEKERGVRAITLTHNQRN--EALSILK--LAEEMTPGHDRQKSAL 115
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
VM+LGIPNVGKS L N+L GR AA+ G +P T+ ++K+ + NI
Sbjct: 116 RVMILGIPNVGKSTLINTLA--GR-PAAKTGN--------EPAVTRAQQAIKLPN--NIL 162
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
+ DTPG L P++ +LA+TGAI + + +++A +
Sbjct: 163 LYDTPGFLWPKLSPEACGYRLAVTGAIRSAVLDFEDVAMF 202
>gi|51892611|ref|YP_075302.1| hypothetical protein STH1473 [Symbiobacterium thermophilum IAM
14863]
gi|51856300|dbj|BAD40458.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 286
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 23/227 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + + PLVD++LE+ DAR P +S + L H P ++L+LNK
Sbjct: 4 WFPGHMAKARRILQENAPLVDVVLEIVDARCPLASRNPDLMALVAHKP-----QVLILNK 58
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFL-QAHVRNLRK-SDYDASSD 141
DLA P + W+ ++ P+ +++ +E L + +A LR +
Sbjct: 59 ADLADPAATRLWVERLNEPGRPAVALDAVRGTGAREVLAAIRRAFAPVLRAWTAKGRKPR 118
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
VM +GIPNVGKS+ N R+ A R A V +PG T+ ++I +
Sbjct: 119 PARVMAVGIPNVGKSSAIN------RLVGA-----RRAPVGDKPGVTRGKQWIRIGK--D 165
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ +LD PGIL P+ D LA TGAI D +E+A + L ++
Sbjct: 166 VELLDMPGILVPKFEDQRDGLLLAATGAIKDEVFDQREVANHLLHLI 212
>gi|366085997|ref|ZP_09452482.1| GTP-binding protein [Lactobacillus zeae KCTC 3804]
Length = 286
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 117/240 (48%), Gaps = 31/240 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A + + +++ VD+ILEV DAR P SS D++ P R+++LNK
Sbjct: 6 WFPGHMAKARKQVQEKIKQVDLILEVVDARTPESSRNPMLDEIIGEKP-----RMMILNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKF---LQAHVRNLRKSDYDASS 140
DLA P +EW+ ++ Q + ++ + +++ + L A + RK +
Sbjct: 61 QDLADPALTREWVQYYQDQGFAAIATDAQHAKRLQQIPQLATKLMAE-KIARKKARGIRN 119
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ M +GIPNVGKS + N L + R A K PG TK+ LK +
Sbjct: 120 PMIKAMCIGIPNVGKSTVLNRL--VHRNIAVTGNK---------PGVTKNQQWLKASD-- 166
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSF----VGGKELAQYFLGILNFSDEYKK 256
N +LDTPGIL P+ + +LA TGAI D+ V G YF+ ++ D KK
Sbjct: 167 NFQLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQEDVVGLYGLTYFMA--HYPDALKK 224
>gi|167040344|ref|YP_001663329.1| HSR1-like GTP-binding protein [Thermoanaerobacter sp. X514]
gi|300914428|ref|ZP_07131744.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
sp. X561]
gi|307724336|ref|YP_003904087.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
sp. X513]
gi|166854584|gb|ABY92993.1| GTP-binding protein, HSR1-related [Thermoanaerobacter sp. X514]
gi|300889363|gb|EFK84509.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
sp. X561]
gi|307581397|gb|ADN54796.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
sp. X513]
Length = 277
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 17/223 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA + + I + LVD++ E+ DARIP SS + + + +R+++LNK DL
Sbjct: 4 WYPGHMAKSKKEIVSNLKLVDVVYEIVDARIPKSSRNPDIDDI--VKNKKRLILLNKADL 61
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN-LRKSDYDASSDTVTV 145
A WI +F + + VNS +KE + ++ L K +
Sbjct: 62 ADDVITDLWIEYFKGKGIEAVKVNSITGFGLKEINEATNKVCQDILEKKKQKGMIPRLRG 121
Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVL 205
M++G+PNVGKS N L IG + A +PG T+ ++ +K P +L
Sbjct: 122 MIVGVPNVGKSTFINKL--IGS---------KRAKTGDKPGVTRALHWIK---TPYFDLL 167
Query: 206 DTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
DTPGIL P+ D +V LA+TGAI D + +E+A + IL
Sbjct: 168 DTPGILWPKFDDKKVGIMLAITGAIKDEILDIEEIALNLVAIL 210
>gi|414160551|ref|ZP_11416817.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
simulans ACS-120-V-Sch1]
gi|410878071|gb|EKS25960.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
simulans ACS-120-V-Sch1]
Length = 289
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 118/227 (51%), Gaps = 29/227 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HMA A R +++++ VD++ E+ DARIP+SS D++ + P R+++LNK
Sbjct: 5 WYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVIQNKP-----RVVILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLR-KSDYDASSD- 141
D+A+ + +W +F + V++ + +K QA V+ + K + D +
Sbjct: 60 KDMANLNETAKWEDYFRSKGYFPVSVDAKHGKGLKS---VEQAAVQATKEKFERDKAKGL 116
Query: 142 ---TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
+ M++GIPNVGKS L N L A K A PG TK +K+
Sbjct: 117 KPRAIRAMIVGIPNVGKSTLINKL--------ANKA---IAKTGNTPGVTKQQQWIKVGK 165
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
++ +LDTPGIL P+ D V KL+LTGAI DS V ++A + L
Sbjct: 166 --SLQLLDTPGILWPKFEDQTVGKKLSLTGAIKDSIVHLDDVAIFGL 210
>gi|332711377|ref|ZP_08431309.1| Ras superfamily GTP-binding protein YlqF [Moorea producens 3L]
gi|332349926|gb|EGJ29534.1| Ras superfamily GTP-binding protein YlqF [Moorea producens 3L]
Length = 288
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 128/263 (48%), Gaps = 28/263 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H+A A R + +++ VD++LEVRDARIP S+ Q + R+LV+N++D+
Sbjct: 5 WYPGHIAKAERELKEQLKRVDVVLEVRDARIPLSTNHPQ--TDQWVGNKTRVLVINRVDM 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ--AHVRNLRKSDYDASSDTVT 144
P + W ++F +Q + N+ ++ K Q N R+ V
Sbjct: 63 IDPRMRQLWESWFQKQGDIPYFTNAQQGKGIRAVAKAAQTAGEEINRRRRSRGMRPRPVR 122
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
+++G PNVGKSAL N L +GR R + +PG T+ + ++I+ + +
Sbjct: 123 AVVIGFPNVGKSALINRL--LGR---------RVVESARRPGVTRQLRWIRISDQ--LEL 169
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
LD PG++P ++++ + KLA+ IG++ + +A + L D+ K++ +
Sbjct: 170 LDAPGVIPAKLNNQQQALKLAICDDIGEASYDNQRVATALVAFLKDLDKMKEYTLLLKSS 229
Query: 265 INK-------PLT----LHHKAD 276
+ K PLT LH AD
Sbjct: 230 LEKRYQLDPNPLTAEDYLHGLAD 252
>gi|414071675|ref|ZP_11407638.1| 50S ribosomal subunit maturation GTPase RbgA [Pseudoalteromonas sp.
Bsw20308]
gi|410805865|gb|EKS11868.1| 50S ribosomal subunit maturation GTPase RbgA [Pseudoalteromonas sp.
Bsw20308]
Length = 314
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 109/227 (48%), Gaps = 39/227 (17%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A I + MP +D+I+EV DARIP+SSE LR P I +LNK
Sbjct: 5 WFPGHMNKARNEIKEIMPQMDVIIEVLDARIPYSSENPMVATLREGKPV-----IKILNK 59
Query: 84 MDLASPTQFKEWITFFDQQN---CPSFGVNSHNK----DNVKEFLKFLQAHVRNLRKSDY 136
DLA P + W +F+Q+N SFG H+K + E K L H K
Sbjct: 60 ADLADPKMTQIWKDYFEQENGVKAISFG---HDKAAEVHRINELCKKLVPHKVGADKQ-- 114
Query: 137 DASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI 196
+ M++GIPNVGKS L N L GRI A +P TK +K+
Sbjct: 115 ------IKAMIMGIPNVGKSTLINVLA--GRIV---------AKTGNEPAVTKAQQRIKL 157
Query: 197 ASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
I + DTPG+L P++ + +L TGAI D+ + +E+A Y
Sbjct: 158 ED--GIMLYDTPGMLWPKVENENSGYRLGATGAIRDTALEYEEVASY 202
>gi|332533502|ref|ZP_08409365.1| 50S ribosomal subunit maturation GTPase RbgA [Pseudoalteromonas
haloplanktis ANT/505]
gi|332037049|gb|EGI73507.1| 50S ribosomal subunit maturation GTPase RbgA [Pseudoalteromonas
haloplanktis ANT/505]
Length = 314
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 109/227 (48%), Gaps = 39/227 (17%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A I + MP +D+I+EV DARIP+SSE LR P I +LNK
Sbjct: 5 WFPGHMNKARNEIKEIMPQMDVIIEVLDARIPYSSENPMVATLREGKPV-----IKILNK 59
Query: 84 MDLASPTQFKEWITFFDQQN---CPSFGVNSHNK----DNVKEFLKFLQAHVRNLRKSDY 136
DLA P + W +F+Q+N SFG H+K + E K L H K
Sbjct: 60 ADLADPKMTQIWKDYFEQENGVKAISFG---HDKAAEVHRINELCKKLVPHKVGADKQ-- 114
Query: 137 DASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI 196
+ M++GIPNVGKS L N L GRI A +P TK +K+
Sbjct: 115 ------IKAMIMGIPNVGKSTLINVLA--GRIV---------AKTGNEPAVTKAQQRIKL 157
Query: 197 ASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
I + DTPG+L P++ + +L TGAI D+ + +E+A Y
Sbjct: 158 ED--GIMLYDTPGMLWPKVENENSGYRLGATGAIRDTALEYEEVASY 202
>gi|86146683|ref|ZP_01065004.1| putative GTPase YlqF [Vibrio sp. MED222]
gi|85835530|gb|EAQ53667.1| putative GTPase YlqF [Vibrio sp. MED222]
Length = 311
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 113/231 (48%), Gaps = 37/231 (16%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRR-----ILVL 81
W+ HM A + I + +P VD+I+EV DARIPFSSE +P SS R + VL
Sbjct: 5 WFPGHMHKARKEIEEVIPQVDVIIEVLDARIPFSSE-------NPMISSLRGDKPCVKVL 57
Query: 82 NKMDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYD 137
NK DLA P + WI F+ +Q + + + K+ V E ++ L H + K+
Sbjct: 58 NKRDLADPELTERWIEHFEKEQGVKAIAITTSAKEEVNHVMELVRKLAPHREQMGKN--- 114
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ M++GIPNVGKS + N L GR A QP T+ +I
Sbjct: 115 -----IRTMIMGIPNVGKSTIINCL--AGRTI---------AVTGNQPAVTR--RQQRIN 156
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ + DTPGIL P++ + +LA TGA+ D+ + E+A Y + L
Sbjct: 157 LQNGVILSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYL 207
>gi|424043235|ref|ZP_17780875.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HENC-03]
gi|408889367|gb|EKM27786.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HENC-03]
Length = 314
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 122/243 (50%), Gaps = 27/243 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + IA+ +P +D+I+EV DARIPFSSE +L+ P + VLNK
Sbjct: 8 WFPGHMHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMIAELKGDKPV-----VKVLNK 62
Query: 84 MDLASPTQFKEWITFFDQQ-NCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + WI F+++ N + + + + E LK ++ VR L + +
Sbjct: 63 RDLADPELTQVWIDHFEKEHNVKAIAITTSQQ---AEVLKIMEL-VRKLAPHREEIGKNI 118
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
T M++GIPNVGKS + N+L GR A QP T+ +I I
Sbjct: 119 RT-MIMGIPNVGKSTIINALA--GRTI---------AVTGNQPAVTR--RQQRINLQNGI 164
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262
+ DTPGIL P++ + +LA TGA+ D+ + E+A Y + L K ++ I
Sbjct: 165 VLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAAHYPEKLKERYQI 224
Query: 263 NQI 265
+++
Sbjct: 225 DEL 227
>gi|153854844|ref|ZP_01996067.1| hypothetical protein DORLON_02072 [Dorea longicatena DSM 13814]
gi|149752546|gb|EDM62477.1| ribosome biogenesis GTP-binding protein YlqF [Dorea longicatena DSM
13814]
Length = 282
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 121/257 (47%), Gaps = 23/257 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
WY HM A R + + + L+D+++E+ DAR+P SS + D+L + R+++LNK
Sbjct: 5 WYPGHMTKAKRMMQENIKLIDLVIELVDARVPISSRNPDIDELGKNKA-----RLILLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDAS--SD 141
DLA W +F ++ VNS +K +Q + + D +
Sbjct: 60 SDLAEDKWNDAWSEYFREKGFSVVKVNSKKGGGIKSINGVIQEACKEKIERDRKRGILNR 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
V M++GIPNVGKS N+L G+ A K PG TK +++ + N
Sbjct: 120 PVRAMVVGIPNVGKSTFINALA--GKACAKTGNK---------PGVTKGKQWIRL--NKN 166
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
+ +LDTPGIL P D V KLA G+I D + +ELA + +N + K++
Sbjct: 167 VELLDTPGILWPRFEDQAVGLKLAFIGSIKDEILQTEELAAELVKFMNENYPGVLENKYN 226
Query: 262 INQINKPLTLHHKADQS 278
+ + P + K +S
Sbjct: 227 VEEDTDPYGMLEKIAES 243
>gi|315918507|ref|ZP_07914747.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563]
gi|317059682|ref|ZP_07924167.1| GTP-binding protein [Fusobacterium sp. 3_1_5R]
gi|313685358|gb|EFS22193.1| GTP-binding protein [Fusobacterium sp. 3_1_5R]
gi|313692382|gb|EFS29217.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563]
Length = 294
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 115/225 (51%), Gaps = 23/225 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPF--SSSRRILVLNKM 84
WY HM I + MPL+D++LE+ DARIP SS+ + P + +RI+VLNK
Sbjct: 6 WYPGHMKKTKDLIKENMPLIDVVLEIVDARIPISSKNPDI----PVFAKNKKRIVVLNKS 61
Query: 85 DLASPTQFKEWITFF--DQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DL ++ +W +F ++ +++ NVK+ + + + Y
Sbjct: 62 DLMEKSELSKWKEYFLKVEKADAVVEISAETGYNVKQLYACIDKVSKEKKDKLYAKGLKK 121
Query: 143 VT--VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
V +++LGIPNVGKS L N + +G+ +A V +PG TK +K+
Sbjct: 122 VNIRIIVLGIPNVGKSRLINRI--VGKNSAG---------VGNKPGFTKGKQWVKLKD-- 168
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+ +LDTPGIL P+ + EV LA+TGAI D + +E+A FL
Sbjct: 169 GLELLDTPGILWPKFENREVGFHLAMTGAIKDEILPLEEVACAFL 213
>gi|302389635|ref|YP_003825456.1| ribosome biogenesis GTP-binding protein YlqF [Thermosediminibacter
oceani DSM 16646]
gi|302200263|gb|ADL07833.1| ribosome biogenesis GTP-binding protein YlqF [Thermosediminibacter
oceani DSM 16646]
Length = 279
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 108/226 (47%), Gaps = 31/226 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HMA R I + + LVD++LE+ DAR P S+ + H S + ++++NK DL
Sbjct: 5 WYPGHMAKTRRIIKENLRLVDVVLEIVDARAPKSTHIPDI--HDLIGSKKLLIIMNKADL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVK---EFLKFLQAHV-RNLRKSDYDASSDT 142
A + W++FF S V+S + K EF K L + R LR
Sbjct: 63 ADEKTTERWVSFFADNGMDSLSVDSRRRVGFKKLNEFAKELSGKIKRPLRG--------- 113
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+++G+PNVGKS+ N + A KG A +PG T+ LK
Sbjct: 114 ---IVVGVPNVGKSSFINQI-------AGRKG----AKTGNKPGITRGKMWLKAGDK--F 157
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+LDTPGIL P+I + V KLA G I + + +E++ +G L
Sbjct: 158 ELLDTPGILWPKIEEEAVGLKLAFLGCIKEELLNVEEISLKLIGFL 203
>gi|91225489|ref|ZP_01260611.1| putative GTPase YlqF [Vibrio alginolyticus 12G01]
gi|254229237|ref|ZP_04922656.1| GTPase of unknown function subfamily, putative [Vibrio sp. Ex25]
gi|262395587|ref|YP_003287440.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio sp. Ex25]
gi|269967447|ref|ZP_06181505.1| hypothetical protein VMC_29350 [Vibrio alginolyticus 40B]
gi|91189852|gb|EAS76125.1| putative GTPase YlqF [Vibrio alginolyticus 12G01]
gi|151938322|gb|EDN57161.1| GTPase of unknown function subfamily, putative [Vibrio sp. Ex25]
gi|262339181|gb|ACY52975.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio sp. Ex25]
gi|269827945|gb|EEZ82221.1| hypothetical protein VMC_29350 [Vibrio alginolyticus 40B]
Length = 314
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 122/248 (49%), Gaps = 37/248 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + I + +P VD+I+EV DARIPFSSE Q+R P + VLNK
Sbjct: 8 WFPGHMHKARKEIEEAIPQVDVIIEVLDARIPFSSENPLISQIRGDKPV-----VKVLNK 62
Query: 84 MDLASPTQFKEWITFFDQ-QNCPSFGVNSHNKDNV---KEFLKFLQAHVRNLRKSDYDAS 139
DLA P + WI +Q Q+ + + + V E + L H + K+
Sbjct: 63 RDLADPELTQLWIEHLEQEQHVKAMAITTSEPQEVHRIMELCRKLAPHREEIGKN----- 117
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS + N+L GR A QP T+ +I
Sbjct: 118 ---IRTMIMGIPNVGKSTIINTL--AGRTIAV---------TGNQPAVTR--RQQRINLQ 161
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKKW 257
I + DTPGIL P++ + +LA TGA+ D+ + E+A Y + L +++D+ K+
Sbjct: 162 NGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTIEYLAAHYADKLKE- 220
Query: 258 AKFSINQI 265
++ I ++
Sbjct: 221 -RYQIEEL 227
>gi|93007107|ref|YP_581544.1| ribosomal biogenesis GTPase [Psychrobacter cryohalolentis K5]
gi|92394785|gb|ABE76060.1| Ras superfamily GTP-binding protein YlqF [Psychrobacter
cryohalolentis K5]
Length = 318
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 108/221 (48%), Gaps = 27/221 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A I + MP +D+++EV DARIP+SSE LR P I +LNK
Sbjct: 9 WFPGHMNKARNEIKEIMPQMDVVIEVIDARIPYSSENPMVAALRGEKPV-----IKILNK 63
Query: 84 MDLASPTQFKEWITFFDQQN-CPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + W+ + +QQN + ++ ++VK + + V N +
Sbjct: 64 ADLADPELTQAWMDYLEQQNGVKAIACDTDKANDVKRIIAICKQLVPN-----KVGTGRQ 118
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS L N+L GR A +P TK +K+ +I
Sbjct: 119 IKAMIMGIPNVGKSTLINTLA--GRAV---------ARTGDEPAVTKSQQLIKL--DDDI 165
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
+ DTPG+L P++ + +LA TG I D+ ++A Y
Sbjct: 166 MLYDTPGMLWPKVENENSGYRLAATGGIRDTAFDFADVAGY 206
>gi|377830814|ref|ZP_09813805.1| GTP-binding protein [Lactobacillus mucosae LM1]
gi|377555262|gb|EHT16950.1| GTP-binding protein [Lactobacillus mucosae LM1]
Length = 290
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 111/234 (47%), Gaps = 37/234 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R I ++MPLVDI+ E+ DAR+P+SS E D P R+L+L K
Sbjct: 6 WFPGHMAKALRQIREQMPLVDIVFELVDARVPYSSQNPEVDLAAGDKP-----RLLILTK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNK-------DNVKEFL--KFLQAHVRNLRKS 134
DLA P KEW+ +F P ++S + + K+ L K + ++K
Sbjct: 61 TDLADPEVTKEWLQYFKDHGQPVLALDSRARSVAKTVTNAAKQVLAEKLANEQAKGMKKR 120
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ M +G+PNVGKS L N H + + AA + PG T L
Sbjct: 121 -------AIRAMCVGVPNVGKSTLLN--HLVKKNVAATGNR---------PGVTTGQQWL 162
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ S + +LDTPG+L + + LAL+GAI DS ++A + L L
Sbjct: 163 R--SSAELELLDTPGVLWHKFATEKEGLMLALSGAIKDSLFAKDDVALFALQYL 214
>gi|17228240|ref|NP_484788.1| ribosomal biogenesis GTPase [Nostoc sp. PCC 7120]
gi|17130090|dbj|BAB72702.1| all0745 [Nostoc sp. PCC 7120]
Length = 293
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 115/234 (49%), Gaps = 27/234 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A + + +++ VD++ EVRDARIP ++ HHP + RILVL
Sbjct: 14 WYPGHIAKAEKNLKEQLSRVDVVFEVRDARIPLAT-------HHPQIDEWVGNKARILVL 66
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAH--VRNLRKSDYDAS 139
N++D+ P WI +F + + N+ + V K QA N R+ D
Sbjct: 67 NRLDMIPPQVRSLWIDYFQNRGEVPYCTNAQHGQGVVGVAKAAQAAGVELNQRRRDRGML 126
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
V +++G PNVGKSAL N L +G+ R + +PG T+ + ++I+
Sbjct: 127 PRAVRAVVIGFPNVGKSALINRL--LGK---------RVVESAARPGVTRQLRWVRISDQ 175
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDE 253
+ +LD PG++P ++ + E KLA+ IG + + +A + ++N E
Sbjct: 176 --LELLDAPGVIPVKLGNQEAAVKLAICDDIGQASYDNQLVAAALIDLVNSLQE 227
>gi|118485967|gb|ABK94828.1| unknown [Populus trichocarpa]
Length = 367
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 113/226 (50%), Gaps = 19/226 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H+A + + +++ L+D+++EVRDARIP S+ Q+ + +RILVLN+ D+
Sbjct: 93 WYPGHIAKTEKELKEQLKLMDVVIEVRDARIPLSTTHPQMDAW--LGNRKRILVLNREDM 150
Query: 87 ASPTQFKEWITFFDQQNCP---SFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTV 143
S W T+F +Q S G + F K L A V N+++ + V
Sbjct: 151 ISKADRNAWATYFARQGIKVVLSNGQLGMGTMKLSRFAKSLAASV-NVKRREKGLLPRPV 209
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
++G PNVGKS+L N L K R +P+PG T+++ ++ + ++
Sbjct: 210 RAGIVGYPNVGKSSLINRLL-----------KRRMCPAAPRPGVTRELRWVRFGN--DLE 256
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+LD+PGI+P I D KLA+ IG+ ++A + IL
Sbjct: 257 LLDSPGIIPMRISDQSAAIKLAICDDIGERSYDVTDVAAILVQILT 302
>gi|423332731|ref|ZP_17310513.1| GTPase [Lactobacillus reuteri ATCC 53608]
gi|337727849|emb|CCC02937.1| GTPase [Lactobacillus reuteri ATCC 53608]
Length = 290
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 115/232 (49%), Gaps = 33/232 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R I ++MPLVDI+ E+ DAR+P+SS+ ++ ++L++ K DL
Sbjct: 6 WFPGHMAKALRQIREQMPLVDILFELVDARVPYSSQNPEV--ALAAGEKPKLLIMTKTDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNV--------KEFL--KFLQAHVRNLRKSDY 136
A + EWI +F+Q N P ++S ++NV KE L K + + ++K
Sbjct: 64 ADQKRLNEWIKYFEQHNQPVLALDSR-QNNVAKVVTARSKEILKGKLAEEKAKGMKKR-- 120
Query: 137 DASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI 196
+ M +G+PNVGKS L N H + + AA + PG T L+
Sbjct: 121 -----PIRAMCVGVPNVGKSTLLN--HLVKKNVAATGNR---------PGVTTGQQWLR- 163
Query: 197 ASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
S + +LDTPG+L + + LALTGAI DS ++A L L
Sbjct: 164 -SSAELELLDTPGVLWHKFATPKQGIMLALTGAIKDSLYAKDDVALLALDYL 214
>gi|330448111|ref|ZP_08311759.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328492302|dbj|GAA06256.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 316
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 112/229 (48%), Gaps = 26/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HM A + I + +P VD+I+EV DARIPFSSE ++ + + VLNK DL
Sbjct: 7 WFPGHMHKARKEIEEALPKVDVIIEVLDARIPFSSENPLIKTFRDKNDKPVVKVLNKRDL 66
Query: 87 ASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTV 145
A P + WI + +QN + + + N + V + + R L +A +
Sbjct: 67 ADPEMTQLWIEHLEKEQNVKAIAITTENINEVNQIMDL----CRKLAPHREEAGK-KIRT 121
Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVL 205
M++GIPNVGKS + N+L GR A QP T+ + + + + +
Sbjct: 122 MIMGIPNVGKSTIINALA--GRTV---------AITGNQPAVTRQQQRINLDN--GVLLS 168
Query: 206 DTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
DTPGIL P++ + +LA TGAI D+ A ++ + F+ EY
Sbjct: 169 DTPGILWPKVENPHSGFRLAATGAIKDT-------AMDYIDVAFFTIEY 210
>gi|432115360|gb|ELK36777.1| Mitochondrial GTPase 1 [Myotis davidii]
Length = 301
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 112/209 (53%), Gaps = 10/209 (4%)
Query: 43 MPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQ 102
+ LVD I+EV DARI F++ + L + VLNKMDLA + ++ I +++
Sbjct: 5 LKLVDCIVEVHDARISFAAGRNPL-FQETLGIKPHLFVLNKMDLADLKEKQKIIRHLERE 63
Query: 103 NCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANS 161
+ + KD N+K+ + + + N + + + +M++G+PNVGKS+L NS
Sbjct: 64 GLKNVIFTNCIKDENIKQVIPKVTELIGNSYRY-HRGENVEFCIMVIGVPNVGKSSLINS 122
Query: 162 LHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYVLDTPGILPPEIHDVEV 220
L R KGK V +PG T+ + S ++++ P +++LDTPG+L P I VE
Sbjct: 123 L----RRQHLRKGK--ATRVGSEPGITRAVMSKIQVSERPLMFLLDTPGVLAPRIESVET 176
Query: 221 CSKLALTGAIGDSFVGGKELAQYFLGILN 249
KLAL G + D VG + LA Y L LN
Sbjct: 177 GLKLALCGTVLDHLVGEETLADYLLYTLN 205
>gi|359454317|ref|ZP_09243602.1| ribosome biogenesis GTPase A [Pseudoalteromonas sp. BSi20495]
gi|358048609|dbj|GAA79851.1| ribosome biogenesis GTPase A [Pseudoalteromonas sp. BSi20495]
Length = 314
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 109/227 (48%), Gaps = 39/227 (17%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A I + MP +D+I+EV DARIP+SSE LR P I +LNK
Sbjct: 5 WFPGHMNKARNEIKEIMPQMDVIIEVLDARIPYSSENPMVATLREGKPV-----IKILNK 59
Query: 84 MDLASPTQFKEWITFFDQQN---CPSFGVNSHNK----DNVKEFLKFLQAHVRNLRKSDY 136
DLA P + W +F+Q+N SFG H+K + E K L H K
Sbjct: 60 ADLADPKMTQIWKDYFEQENGVKAISFG---HDKAAEVHRINELCKKLVPHKVGADKQ-- 114
Query: 137 DASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI 196
+ M++GIPNVGKS L N L GRI A +P TK +K+
Sbjct: 115 ------IKAMIMGIPNVGKSTLINVLA--GRIV---------AKTGNEPAVTKAQQRIKL 157
Query: 197 ASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
I + DTPG+L P++ + +L TGAI D+ + +E+A Y
Sbjct: 158 ED--GIMLYDTPGMLWPKVENENSGYRLGATGAIRDTALEYEEVASY 202
>gi|359436029|ref|ZP_09226159.1| ribosome biogenesis GTPase A [Pseudoalteromonas sp. BSi20311]
gi|358029314|dbj|GAA62408.1| ribosome biogenesis GTPase A [Pseudoalteromonas sp. BSi20311]
Length = 317
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 110/229 (48%), Gaps = 33/229 (14%)
Query: 22 KKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRI 78
+ G W+ HM A I + MP +D+I+EV DARIP+SSE LR P I
Sbjct: 3 RTGIQWFPGHMNKARNEIKEIMPQMDVIIEVLDARIPYSSENPMVATLREGKPV-----I 57
Query: 79 LVLNKMDLASPTQFKEWITFFDQQN---CPSFGVNSHNK-DNVKEFLKFLQAHVRNLRKS 134
+LNK DLA P + W +F+Q+N +FG + + + E K L H K
Sbjct: 58 KILNKADLADPKMTQTWKDYFEQENGVKAIAFGNDKAAEVHRINELCKKLVPHKVGADKQ 117
Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
+ M++GIPNVGKS L N L GRI A +P TK +
Sbjct: 118 --------IKAMIMGIPNVGKSTLINVLA--GRIV---------AKTGNEPAVTKAQQRI 158
Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
K+ I + DTPG+L P++ + +L TGAI D+ + +E+A Y
Sbjct: 159 KLDD--GIMLYDTPGMLWPKVENENSGYRLGATGAIRDTAIEYEEVASY 205
>gi|195443902|ref|XP_002069628.1| GK11624 [Drosophila willistoni]
gi|194165713|gb|EDW80614.1| GK11624 [Drosophila willistoni]
Length = 323
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 123/271 (45%), Gaps = 22/271 (8%)
Query: 1 MATSSSSLFKLAREIGTAVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFS 60
M S+SS F+ V K+ W+ HM R I R+ VD ++E+ D+RIP +
Sbjct: 1 MTASASSAFRQV----FRVPSKQRINWFPGHMTKGMRQIQQRLRNVDCVVEIHDSRIPIA 56
Query: 61 SEFDQLRNHHPFSSSR-RILVLNKMDLASPTQFKEWITFFDQQNCPSFG----VNSHNKD 115
Q + S + ILVLNKMDL Q + Q P N ++
Sbjct: 57 GRNSQFFDTITGSGVKPHILVLNKMDLLDNKQQRSIRQQLRSQQ-PELRHILFTNCKDQR 115
Query: 116 NVKEFLKFLQAHVRNLRKSDY--DASSDTVTVMLLGIPNVGKSALANSLHQI--GRITAA 171
N L L R + +S A S +M++G+PNVGKS++ N L + R +AA
Sbjct: 116 N-HGVLDILPLATRLISESSRFNRAQSAEHNIMIIGVPNVGKSSVINVLRNVHLKRKSAA 174
Query: 172 EKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIG 231
G A ++ GE +KI P +Y++DTPGIL P I D E+ KLAL G +
Sbjct: 175 RVGA--EAGITRAVGE-----RIKIQEQPAVYMIDTPGILQPSISDDEMGMKLALVGCLP 227
Query: 232 DSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262
D VG +A Y L LN + K +
Sbjct: 228 DHIVGEDLIADYLLYWLNRHQRFDYVKKLHL 258
>gi|418070623|ref|ZP_12707898.1| GTP-binding protein [Lactobacillus rhamnosus R0011]
gi|357540043|gb|EHJ24060.1| GTP-binding protein [Lactobacillus rhamnosus R0011]
Length = 285
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 105/215 (48%), Gaps = 29/215 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A + + +++ VD+ILEV DAR P SS D+L P R+++LNK
Sbjct: 5 WFPGHMAKARKQVQEKIKQVDLILEVVDARTPESSRNPMLDELVGDKP-----RLIILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL-----RKSDYDA 138
DLA P EW+ ++ Q + +++ + K + QA + + RK
Sbjct: 60 QDLADPVLTNEWVRYYQTQGFAAIAIDAQ---HAKRLQQIPQAAAKLMAEKIARKKARGI 116
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
+ + M +GIPNVGKS + N L + A +PG TK+ LK +
Sbjct: 117 RNPMIKAMCIGIPNVGKSTVLNRLV-----------RKNIAVTGNKPGVTKNQQWLKASD 165
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDS 233
N +LDTPGIL P+ + +LA TGAI D+
Sbjct: 166 --NFQLLDTPGILWPKFASQTIGMRLAFTGAIADA 198
>gi|167756890|ref|ZP_02429017.1| hypothetical protein CLORAM_02439 [Clostridium ramosum DSM 1402]
gi|237734600|ref|ZP_04565081.1| ribosomal biogenesis GTPase [Mollicutes bacterium D7]
gi|365832610|ref|ZP_09374141.1| ribosome biogenesis GTP-binding protein YlqF [Coprobacillus sp.
3_3_56FAA]
gi|374625647|ref|ZP_09698063.1| ribosome biogenesis GTP-binding protein YlqF [Coprobacillus sp.
8_2_54BFAA]
gi|167703065|gb|EDS17644.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium ramosum
DSM 1402]
gi|229382420|gb|EEO32511.1| ribosomal biogenesis GTPase [Coprobacillus sp. D7]
gi|365260189|gb|EHM90154.1| ribosome biogenesis GTP-binding protein YlqF [Coprobacillus sp.
3_3_56FAA]
gi|373915307|gb|EHQ47078.1| ribosome biogenesis GTP-binding protein YlqF [Coprobacillus sp.
8_2_54BFAA]
Length = 288
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 115/233 (49%), Gaps = 35/233 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R I+++M L+DI++E+ DAR P SS+ F+++ N+ P R++V+ K
Sbjct: 7 WFPGHMAKARREISEKMKLIDIVIELVDARAPLSSKNPMFNEICNNKP-----RLIVMTK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHN-------KDNVKEFLKFLQAHVRNLRKSDY 136
DLA +WI +F + + VN N D KE LK + R++
Sbjct: 62 KDLADSKATSKWIEYFKGKGIYAICVNLKNFNEYQLVIDVCKEILK-----EKMEREAKR 116
Query: 137 DASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVS-PQPGETKDIYSLK 195
+ M+LGIPNVGKS N L + R ATV+ +PG TK ++
Sbjct: 117 GLKPRAMRAMVLGIPNVGKSTFINRLAK------------RKATVTGNRPGVTKAQQIIR 164
Query: 196 IASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ ++ DTPG+L P+ D+ V +AL G+I + EL Y + L
Sbjct: 165 VDKDFELF--DTPGVLWPKFDDLNVARNIALIGSIKQDILPLDELFIYAVNYL 215
>gi|300173224|ref|YP_003772390.1| GTP-binding protein RbgA [Leuconostoc gasicomitatum LMG 18811]
gi|299887603|emb|CBL91571.1| GTP-binding protein RbgA [Leuconostoc gasicomitatum LMG 18811]
Length = 284
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 110/225 (48%), Gaps = 23/225 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + + + LVD+I E+ DARIP SS E D+L P R+L++ K
Sbjct: 7 WFPGHMAKAFRLMRENLKLVDVIFELVDARIPESSRNPEVDKLIGSKP-----RLLIMTK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV--RNLRKSDYDASSD 141
DLA P Q + W F+ + +++ + + +K + V + ++
Sbjct: 62 ADLADPEQIRAWKARFESEGHTVLVLDTRDPRTPQLVIKAARRAVASKKAAQTARGIQDQ 121
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ M+ GIPNVGKS L N L A++ PG TK I LK +
Sbjct: 122 PIRAMITGIPNVGKSTLLNHLVMKNVAPTADR-----------PGVTKKIAWLKTPT--K 168
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLG 246
+ +LD+PG+L P+ D + KLALTGA+ D+ + A + +G
Sbjct: 169 LDLLDSPGVLWPKFEDQVIGMKLALTGAVKDTIFAKDDAALFLIG 213
>gi|218676387|ref|YP_002395206.1| ribosomal biogenesis GTPase [Vibrio splendidus LGP32]
gi|218324655|emb|CAV26234.1| putative GTPase [Vibrio splendidus LGP32]
Length = 343
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 113/231 (48%), Gaps = 37/231 (16%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRR-----ILVL 81
W+ HM A + I + +P VD+I+EV DARIPFSSE +P SS R + VL
Sbjct: 37 WFPGHMHKARKEIEEVIPQVDVIIEVLDARIPFSSE-------NPMISSLRGDKPCVKVL 89
Query: 82 NKMDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVK---EFLKFLQAHVRNLRKSDYD 137
NK DLA P + WI F+ +Q + + + K+ V E ++ L H + K+
Sbjct: 90 NKRDLADPELTERWIEHFEKEQGVKAIAITTSAKEEVNHVMELVRKLAPHREQMGKN--- 146
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ M++GIPNVGKS + N L GR A QP T+ +I
Sbjct: 147 -----IRTMIMGIPNVGKSTIINCL--AGRTI---------AVTGNQPAVTRR--QQRIN 188
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ + DTPGIL P++ + +LA TGA+ D+ + E+A Y + L
Sbjct: 189 LQNGVILSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYL 239
>gi|148977011|ref|ZP_01813657.1| putative GTPase YlqF [Vibrionales bacterium SWAT-3]
gi|417950166|ref|ZP_12593293.1| GTPase YlqF [Vibrio splendidus ATCC 33789]
gi|145963671|gb|EDK28932.1| putative GTPase YlqF [Vibrionales bacterium SWAT-3]
gi|342807107|gb|EGU42308.1| GTPase YlqF [Vibrio splendidus ATCC 33789]
Length = 311
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 112/228 (49%), Gaps = 31/228 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRR-----ILVL 81
W+ HM A + I + +P VD+I+EV DARIPFSSE +P SS R + VL
Sbjct: 5 WFPGHMHKARKEIEEVIPQVDVIIEVLDARIPFSSE-------NPMISSLRGDKPCVKVL 57
Query: 82 NKMDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASS 140
NK DLA P + WI F+ +Q + + + K+ V ++ VR L +
Sbjct: 58 NKRDLADPELTERWIEHFEKEQGVKAIAITTSVKEEVNHIMEL----VRKLAPHREEIGK 113
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ T M++GIPNVGKS + N L GR A QP T+ +I
Sbjct: 114 NIRT-MIMGIPNVGKSTIINCL--AGRTI---------AVTGNQPAVTR--RQQRINLQN 159
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ + DTPGIL P++ + +LA TGA+ D+ + E+A Y + L
Sbjct: 160 GVILSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYL 207
>gi|239631518|ref|ZP_04674549.1| ras superfamily protein-binding protein YlqF [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|417980689|ref|ZP_12621369.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei 12A]
gi|239525983|gb|EEQ64984.1| ras superfamily protein-binding protein YlqF [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|410525012|gb|EKP99919.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei 12A]
Length = 286
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 112/234 (47%), Gaps = 27/234 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A + + +++ VDI+LEV DAR P SS D+L P RI+VLNK
Sbjct: 6 WFPGHMAKARKQVQEKIKQVDIVLEVVDARTPESSRNPMLDELVADKP-----RIMVLNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKF---LQAHVRNLRKSDYDASS 140
DLA P W+ ++ Q + +++ + +++ + L A + RK +
Sbjct: 61 QDLADPALTAAWVQYYQDQGFAAIAIDAQHAKRLQQIPQLATKLMAE-KIARKKARGIRN 119
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ M +GIPNVGKS + N L + R A K PG TK+ LK +
Sbjct: 120 PMIKAMCIGIPNVGKSTVLNRL--VRRNIAVTGNK---------PGVTKNQQWLKASD-- 166
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
N +LDTPGIL P+ + +LA TGAI D+ + Y G+ F Y
Sbjct: 167 NFQLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQEDMVGLY--GLTYFMAHY 218
>gi|334340375|ref|YP_004545355.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
ruminis DSM 2154]
gi|334091729|gb|AEG60069.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
ruminis DSM 2154]
Length = 283
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 122/245 (49%), Gaps = 23/245 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + + + LVD+ +E+ DARIP SSE Q+ + P R+++LNK
Sbjct: 7 WFPGHMAKARRQVQEALKLVDVAVELLDARIPLSSENPMIGQILGNKP-----RVIILNK 61
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV--RNLRKSDYDASSD 141
DLA P K W ++ V++ + +KE K V + + + +
Sbjct: 62 SDLADPGLTKAWQKKLERDQVKVIAVDTLKGEGLKEVPKAANLLVAEQMAKLAAKGRRAR 121
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
M+LGIPNVGKS+ N L +GR A + G L PG TK +++ +
Sbjct: 122 AARCMVLGIPNVGKSSFINRL--VGR-RATKTGDL--------PGVTKGQQWIRLEG--S 168
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
+ +LDTPGIL P+ D +V KLA+TGA+ + E+A L L ++ K ++
Sbjct: 169 LELLDTPGILWPKFEDPQVGFKLAVTGAVKEQVFDVYEVALKLLQWLVETNPEKIKERYR 228
Query: 262 INQIN 266
+ +N
Sbjct: 229 LTDLN 233
>gi|224085461|ref|XP_002307583.1| predicted protein [Populus trichocarpa]
gi|222857032|gb|EEE94579.1| predicted protein [Populus trichocarpa]
Length = 387
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 113/226 (50%), Gaps = 19/226 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H+A + + +++ L+D+++EVRDARIP S+ Q+ + +RILVLN+ D+
Sbjct: 93 WYPGHIAKTEKELKEQLKLMDVVIEVRDARIPLSTTHPQMDAW--LGNRKRILVLNREDM 150
Query: 87 ASPTQFKEWITFFDQQNCP---SFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTV 143
S W T+F +Q S G + F K L A V N+++ + V
Sbjct: 151 ISKADRNAWATYFARQGIKVVLSNGQLGMGTMKLSRFAKSLAASV-NVKRREKGLLPRPV 209
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
++G PNVGKS+L N L K R +P+PG T+++ ++ + ++
Sbjct: 210 RAGIVGYPNVGKSSLINRLL-----------KRRMCPAAPRPGVTRELRWVRFGN--DLE 256
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
+LD+PGI+P I D KLA+ IG+ ++A + IL
Sbjct: 257 LLDSPGIIPMRISDQSAAIKLAICDDIGERSYDVTDVAAILVQILT 302
>gi|384247552|gb|EIE21038.1| GTPase [Coccomyxa subellipsoidea C-169]
Length = 310
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 110/211 (52%), Gaps = 21/211 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H+A A R + +++ +VD++LEVRDARIP S+ QL + R+L+LN++D+
Sbjct: 32 WYPGHIARAERRLKEQLGMVDVVLEVRDARIPMSTCHSQLAKW--CGTKPRLLLLNRVDM 89
Query: 87 ASPTQFKEWITFFDQQNCPSF---GVNSHNKDNVKEFLKFLQAHVR-NLRKSDYDASSDT 142
S + W F QQ P GV+ V++ L A V N ++ +
Sbjct: 90 ISESDRSAWTRHFKQQKTPVLWTDGVSGLGSGQVRK--AALDASVAINAKRRNRGLMPRP 147
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
V +++G PNVGKSAL N L + R R +P+PG T+D+ ++ S ++
Sbjct: 148 VRAVMIGFPNVGKSALINRL--LNR---------RVCRSAPKPGVTRDLRWNRLGS--DL 194
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDS 233
+LD PG++P D + +LA+ IG++
Sbjct: 195 DLLDAPGVIPASFTDQQAAQRLAVCNDIGEA 225
>gi|254424502|ref|ZP_05038220.1| GTPase, putative [Synechococcus sp. PCC 7335]
gi|196191991|gb|EDX86955.1| GTPase, putative [Synechococcus sp. PCC 7335]
Length = 296
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 17/229 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H+A A +A+ +++ VD++LEVRDARIP ++ L +R+LV+N++D+
Sbjct: 8 WYPGHIAKAEKALQEQIKRVDVVLEVRDARIPLATLHPDL--DRWLGDKKRVLVVNRVDM 65
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNV--KEFLKFLQAHVRNLRKSDYDASSDTVT 144
+P W +F ++ N++ V N R+ D S V
Sbjct: 66 IAPQMRDRWQAWFKANGQTAYYTNANQGKGVGQIAKAAQQAGAAMNQRRKDRGMRSRPVR 125
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
+++G PNVGKSAL N L + + +A K G T+ + ++I+ I +
Sbjct: 126 AVVIGFPNVGKSALINRLLKRKIVESARKA-----------GITRQLRWVRISDE--IEL 172
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDE 253
LD PGI+P ++ D + KLA+ IG++ + +A F+ +L D+
Sbjct: 173 LDAPGIIPAQLTDQKAALKLAICDDIGEAAYDTQRVAAAFVELLKELDQ 221
>gi|384422850|ref|YP_005632209.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae
LMA3984-4]
gi|327485558|gb|AEA79964.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae
LMA3984-4]
Length = 314
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 110/226 (48%), Gaps = 27/226 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + I + +P VD+I+EV DARIPFSSE +R P + VLNK
Sbjct: 8 WFPGHMHKARKEIEEAIPQVDVIIEVLDARIPFSSENPLISHIRGEKPC-----VKVLNK 62
Query: 84 MDLASPTQFKEWITFFDQQN-CPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + WIT +Q+ + + + N V + L+ R L + +
Sbjct: 63 RDLADPELTELWITHLEQEKGVKAMAITTSNPQEVHKILEL----CRKLAPQREEIGKN- 117
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ M++GIPNVGKS + N+L GR A QP T+ +I I
Sbjct: 118 IRTMIMGIPNVGKSTIINTL--AGRAI---------AQTGNQPAVTR--RQQRINLQNGI 164
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ DTPGIL P++ + +LA TGA+ D+ + E+A Y + L
Sbjct: 165 VLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYL 210
>gi|199599537|ref|ZP_03212925.1| Predicted GTPase [Lactobacillus rhamnosus HN001]
gi|258508403|ref|YP_003171154.1| GTP-binding protein [Lactobacillus rhamnosus GG]
gi|385828073|ref|YP_005865845.1| putative GTPase [Lactobacillus rhamnosus GG]
gi|199589578|gb|EDY97696.1| Predicted GTPase [Lactobacillus rhamnosus HN001]
gi|257148330|emb|CAR87303.1| GTP-binding protein [Lactobacillus rhamnosus GG]
gi|259649718|dbj|BAI41880.1| putative GTPase [Lactobacillus rhamnosus GG]
Length = 285
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 105/215 (48%), Gaps = 29/215 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A + + +++ VD+ILEV DAR P SS D+L P R+++LNK
Sbjct: 5 WFPGHMAKARKQVQEKIKQVDLILEVVDARTPESSRNPMLDELVGDKP-----RLIILNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL-----RKSDYDA 138
DLA P EW+ ++ Q + +++ + K + QA + + RK
Sbjct: 60 QDLADPVLTNEWVRYYQTQGFAAIAIDAQ---HAKRLQQIPQAAAKLMAEKIARKKARGI 116
Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
+ + M +GIPNVGKS + N L + A +PG TK+ LK +
Sbjct: 117 RNPMIKAMCIGIPNVGKSTVLNRLV-----------RKNIAVTGNKPGVTKNQQWLKASD 165
Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDS 233
N +LDTPGIL P+ + +LA TGAI D+
Sbjct: 166 --NFQLLDTPGILWPKFASQTIGMRLAFTGAIADA 198
>gi|451972911|ref|ZP_21926112.1| putative GTPase YlqF [Vibrio alginolyticus E0666]
gi|451931213|gb|EMD78906.1| putative GTPase YlqF [Vibrio alginolyticus E0666]
Length = 314
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 122/248 (49%), Gaps = 37/248 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + I + +P VD+I+EV DARIPFSSE Q+R P + VLNK
Sbjct: 8 WFPGHMHKARKEIEEAIPQVDVIIEVLDARIPFSSENPLISQIRGDKPV-----VKVLNK 62
Query: 84 MDLASPTQFKEWITFFDQ-QNCPSFGVNSHNKDNV---KEFLKFLQAHVRNLRKSDYDAS 139
DLA P + WI +Q Q+ + + + V E + L H + K+
Sbjct: 63 RDLADPELTQLWIEHLEQEQHVKAMAITTSEPQEVHRIMELCRKLAPHREEIGKN----- 117
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS + N+L GR A QP T+ +I
Sbjct: 118 ---IRTMIMGIPNVGKSTIINTL--AGRTI---------AVTGNQPAVTR--RQQRINLQ 161
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKKW 257
I + DTPGIL P++ + +LA TGA+ D+ + E+A Y + L +++D+ K+
Sbjct: 162 NGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTIEYLAAHYADKLKE- 220
Query: 258 AKFSINQI 265
++ I ++
Sbjct: 221 -RYQIEEL 227
>gi|229918611|ref|YP_002887257.1| GTP-binding protein HSR1-related [Exiguobacterium sp. AT1b]
gi|229470040|gb|ACQ71812.1| GTP-binding protein HSR1-related [Exiguobacterium sp. AT1b]
Length = 286
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 111/222 (50%), Gaps = 22/222 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HMA A R + +++ L+D+++E+ DAR+P SS D++ P R++VLNK
Sbjct: 5 WFPGHMAKARRQVTEKLKLIDVVIELVDARVPQSSRNPMVDEITAGKP-----RLIVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
D+A P W+ ++ V++ + +K+ + Q ++ R + +
Sbjct: 60 ADMADPVVTDAWLRALKREEVEVVAVDAKHSKGLKQLITGAQKLMKEKHDRMREKGRNPG 119
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ +++GIPNVGKS L N L GR A +PG TK +K+
Sbjct: 120 PIRALIIGIPNVGKSTLINRLA--GR---------NIAITGDRPGVTKRQQWIKMKGG-E 167
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
+ +LDTPGIL P+ D V +LA TGAI D + ++A Y
Sbjct: 168 MELLDTPGILWPKFEDQLVGYRLAATGAIKDEILNLDDIALY 209
>gi|126660249|ref|ZP_01731365.1| hypothetical protein CY0110_06809 [Cyanothece sp. CCY0110]
gi|126618488|gb|EAZ89241.1| hypothetical protein CY0110_06809 [Cyanothece sp. CCY0110]
Length = 278
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 116/229 (50%), Gaps = 27/229 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVL 81
WY H+A A R + +++ VD+I EV DARIP +S HHP R+LVL
Sbjct: 6 WYPGHIAKAERQLKEQLNRVDVIFEVLDARIPLAS-------HHPDVPQWIGDKPRLLVL 58
Query: 82 NKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ-AHVR-NLRKSDYDAS 139
N+MD+ + ++W+ +F Q + N+ +K K Q A V+ N R+ D
Sbjct: 59 NRMDMIPESVRQDWLNWFAAQGEKIYYTNAKQGKGIKPLTKAAQGAGVQMNQRRCDRGMR 118
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
V +++G PNVGKSAL N L +GR A R A G T+ + ++I+
Sbjct: 119 PRAVRAVVIGFPNVGKSALINRL--LGRKVVASA---RRA------GVTRQLQWIRISD- 166
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
++ +LD PGI+P ++ + E KLA+ IG++ +++ + +L
Sbjct: 167 -SLELLDAPGIIPAKLDNQEDAVKLAICEDIGEAAYDNQQIGAALVDLL 214
>gi|259503397|ref|ZP_05746299.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus antri
DSM 16041]
gi|259168642|gb|EEW53137.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus antri
DSM 16041]
Length = 290
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 114/231 (49%), Gaps = 31/231 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R I ++MPLVDI+ E+ DAR+P+SS+ ++ R+L++ K DL
Sbjct: 6 WFPGHMAKALRQIREQMPLVDIVFELVDARVPYSSQNPEV--ALAAGEKPRLLIMTKTDL 63
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNS--HNKDNV-----KEFL--KFLQAHVRNLRKSDYD 137
A P + EW FF Q P ++S HN + KE L + +Q + L+K
Sbjct: 64 ADPDRLAEWQRFFADQGQPVLALDSRRHNVSKLVTAKSKEILHDQLVQEAAKGLKKR--- 120
Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
+ M +G+PNVGKS L N L + A+ G +PG T L+
Sbjct: 121 ----PIRAMCVGVPNVGKSTLLNHLV---KKNVAQTGN--------RPGVTTGQQWLR-- 163
Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
S + +LDTPG+L + + LAL+GAI DS ++A + L L
Sbjct: 164 SSAELELLDTPGVLWHKFASPKRGVMLALSGAIKDSLYPKDDVALFALAYL 214
>gi|254506641|ref|ZP_05118782.1| GTP-binding protein [Vibrio parahaemolyticus 16]
gi|219550514|gb|EED27498.1| GTP-binding protein [Vibrio parahaemolyticus 16]
Length = 311
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 114/226 (50%), Gaps = 27/226 (11%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + IA+ +P +D+I+EV DARIPFSSE +L+ P + VLNK
Sbjct: 5 WFPGHMHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMIAELKGDKPV-----VKVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQ-NCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P + WI F+++ N + + + + V + ++ VR L + +
Sbjct: 60 RDLADPELTQLWIDHFEKEHNVKAIAITTSQQAEVNKIMEL----VRKLAPHREEIGKNI 115
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
T M++GIPNVGKS + N+L GR A QP T+ +I I
Sbjct: 116 RT-MIMGIPNVGKSTIINALA--GRTI---------AVTGNQPAVTR--RQQRINLQNGI 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ DTPGIL P++ + +LA TGA+ D+ + E+A Y + L
Sbjct: 162 VLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYL 207
>gi|385813926|ref|YP_005850319.1| GTP binding protein [Lactobacillus helveticus H10]
gi|323466645|gb|ADX70332.1| GTP binding protein [Lactobacillus helveticus H10]
Length = 283
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 117/241 (48%), Gaps = 26/241 (10%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + D++ L+D+++EV DARIP SS + L + P I++LNK
Sbjct: 6 WYPGHMNKARNQLEDKLGLIDVLVEVLDARIPESSRNPMIEDLVGNKP-----HIIILNK 60
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRK--SDYDASSD 141
DLA P K ++S + N+++ + ++ K AS+
Sbjct: 61 ADLADPVLTKNLSAKLSGPGKYVLAIDSLHNTNMQKLISMVKKAAAEKTKKLEARGASNP 120
Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
T+ + L GIPN GKS + N L +GR AE G +PG TK L+ +S N
Sbjct: 121 TIRIALAGIPNCGKSTIINRL--VGR-NVAEVGN--------KPGVTKGQRWLRTSS--N 167
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY-KKWAKF 260
I VLDTPGIL P+ D EV KLA GAI DS ++A Y L N Y K KF
Sbjct: 168 IQVLDTPGILWPKFSDQEVGYKLAAFGAIKDSVFHADDVALYVLE--NLRQHYLKDLTKF 225
Query: 261 S 261
S
Sbjct: 226 S 226
>gi|430750335|ref|YP_007213243.1| ribosome biogenesis GTP-binding protein YlqF [Thermobacillus
composti KWC4]
gi|430734300|gb|AGA58245.1| ribosome biogenesis GTP-binding protein YlqF [Thermobacillus
composti KWC4]
Length = 292
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 116/244 (47%), Gaps = 36/244 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A R I +++ +D ++E+ DAR+P SS D++ P R+++LNK
Sbjct: 5 WFPGHMTRARRQIQEKLKQIDAVIELLDARVPHSSRNPMIDEILRGKP-----RLVLLNK 59
Query: 84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
DLA WI F + S V++ +KE + A V+ L ++
Sbjct: 60 ADLADQRATDRWIAAFREDGLDSLAVDAAGGQGIKE----ISARVKKLVAPQWERMAARG 115
Query: 138 -ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI 196
V V+++GIPNVGKS L N L GR AA +PG TK +K+
Sbjct: 116 VVKPRAVRVLIVGIPNVGKSTLINRLA--GRSVAA---------TGDRPGVTKGQQWIKV 164
Query: 197 ASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKK 256
+ +LDTPGIL P+ D V +LA+ G+I + + +E+A F + + +Y
Sbjct: 165 GGE--MELLDTPGILWPKFDDQTVGMRLAVIGSIREEILNLEEIA--FFAVKTLAGKY-- 218
Query: 257 WAKF 260
W F
Sbjct: 219 WDAF 222
>gi|344943912|ref|ZP_08783198.1| ribosome biogenesis GTP-binding protein YlqF [Methylobacter
tundripaludum SV96]
gi|344259570|gb|EGW19843.1| ribosome biogenesis GTP-binding protein YlqF [Methylobacter
tundripaludum SV96]
Length = 306
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 114/236 (48%), Gaps = 37/236 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + + + +P VD+I+E+ DARIPFSS+ LR P I VL+K
Sbjct: 5 WYPGHMHKAGKEVKEILPQVDLIIEILDARIPFSSQNPMLAALRGDKPC-----IKVLSK 59
Query: 84 MDLASPTQFKEWITFFDQ-QNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P ++W T+ +Q Q + + + + +++ + + N ASSD
Sbjct: 60 SDLADPVVTQQWQTYLEQEQGVKTLALTTEQPEKMRQLTELCHKMLPN------KASSDK 113
Query: 143 -VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
+ +++GIPNVGKS L N L GR+ A +P TK + I
Sbjct: 114 PIHTLIMGIPNVGKSTLINILA--GRMIAK---------TGNEPAITKTQQRIDIGH--G 160
Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDS--------FVGGKELAQYFLGILN 249
I +LDTPG+L P + + +LA TGAI D+ F + L QY+ +L
Sbjct: 161 IILLDTPGMLWPNVENKNSGYRLATTGAIKDTAISHENVAFFAAEYLLQYYPDLLQ 216
>gi|219669770|ref|YP_002460205.1| GTP1/OBG protein [Desulfitobacterium hafniense DCB-2]
gi|219540030|gb|ACL21769.1| GTP1/OBG protein [Desulfitobacterium hafniense DCB-2]
Length = 276
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 118/222 (53%), Gaps = 20/222 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ VD+++E+ DAR+P SS L+ +I++LNK+DL
Sbjct: 5 WFPGHMAKAKRLLLEQLRWVDVVIELGDARLPESSRNPLLQEM--LGDKPKIIILNKVDL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---KFLQAHVRNLRKSDYDASSDTV 143
A P + W Q N P V++ + V + + + L AH + + + + ++
Sbjct: 63 ADPYWTEIWTRKLRQSN-PVLAVSATSGAGVGKIVPEVERLMAH-KIEKWTAKGIRARSI 120
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
VM++GIPN GKS+L N+L I +A+ A +PG T+ ++I H +
Sbjct: 121 RVMIVGIPNCGKSSLVNNL-----IGSAK------AKTGNKPGVTRGNQWIRI--HERVE 167
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LDTPG+L P+ D EV KL GAI D + +EL+ + L
Sbjct: 168 LLDTPGLLWPKFEDPEVGKKLGAVGAIRDEVLNLEELSLWVL 209
>gi|84387450|ref|ZP_00990469.1| putative GTPase YlqF [Vibrio splendidus 12B01]
gi|84377703|gb|EAP94567.1| putative GTPase YlqF [Vibrio splendidus 12B01]
Length = 311
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 111/228 (48%), Gaps = 31/228 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRR-----ILVL 81
W+ HM A + I + +P VD+I+EV DARIPFSSE +P SS R + VL
Sbjct: 5 WFPGHMHKARKEIEEVIPQVDVIIEVLDARIPFSSE-------NPMISSLRGDKPCVKVL 57
Query: 82 NKMDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASS 140
NK DLA P + WI F+ +Q + + + K+ V ++ VR L +
Sbjct: 58 NKRDLADPELTERWIEHFEKEQGVKAIAITTSVKEEVNHVMEL----VRKL-APHREQMG 112
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
+ M++GIPNVGKS + N L GR A QP T+ +I
Sbjct: 113 KNIRTMIMGIPNVGKSTIINCL--AGRTI---------AVTGNQPAVTR--RQQRINLQN 159
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+ + DTPGIL P++ + +LA TGA+ D+ + E+A Y + L
Sbjct: 160 GVILSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYL 207
>gi|359444944|ref|ZP_09234704.1| ribosome biogenesis GTPase A [Pseudoalteromonas sp. BSi20439]
gi|358041191|dbj|GAA70953.1| ribosome biogenesis GTPase A [Pseudoalteromonas sp. BSi20439]
Length = 314
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 108/224 (48%), Gaps = 33/224 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A I + MP +D+I+EV DARIP+SSE LR P I +LNK
Sbjct: 5 WFPGHMNKARNEIKEIMPQMDVIIEVLDARIPYSSENPMVATLREGKPV-----IKILNK 59
Query: 84 MDLASPTQFKEWITFFDQQN---CPSFGVNSHNK-DNVKEFLKFLQAHVRNLRKSDYDAS 139
DLA P + W +F+Q+N +FG + + + E K L H K
Sbjct: 60 ADLADPKMTQTWKDYFEQENGVKAIAFGNDKAAEVHRINELCKKLVPHKVGADKQ----- 114
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS L N L GRI A +P TK +K+
Sbjct: 115 ---IKAMIMGIPNVGKSTLINVLA--GRIV---------AKTGNEPAVTKAQQRIKLDD- 159
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
I + DTPG+L P++ + +L TGAI D+ + +E+A Y
Sbjct: 160 -GIMLYDTPGMLWPKVENENSGYRLGATGAIRDTAIEYEEVASY 202
>gi|153954033|ref|YP_001394798.1| ribosomal biogenesis GTPase [Clostridium kluyveri DSM 555]
gi|219854647|ref|YP_002471769.1| hypothetical protein CKR_1304 [Clostridium kluyveri NBRC 12016]
gi|146346914|gb|EDK33450.1| Predicted GTP-binding protein [Clostridium kluyveri DSM 555]
gi|219568371|dbj|BAH06355.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 280
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 109/224 (48%), Gaps = 17/224 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA R I + + LVD+++E+RDARI +S+ + S RI++LNK DL
Sbjct: 5 WFPGHMARTKREIKENLKLVDVVVEIRDARIIKASKNPDI--ESICGSKPRIILLNKSDL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV--RNLRKSDYDASSDTVT 144
+ + K+WI++ + N VN + +K L + ++ R +
Sbjct: 63 SEESITKQWISYLLEDNVRVLAVNCNTGQGLKSIRPMLNELLEEKHNRMKKKGVAKIVDR 122
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
M++GIPNVGKS+ N + K A + +PG TK +K + I +
Sbjct: 123 AMVVGIPNVGKSSFINKM-----------AKSSIAKIGDRPGVTKSKQWIK--TKLGIEL 169
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+DTPGIL P++ E LA TGAI D + + LA L +L
Sbjct: 170 MDTPGILWPKLESEETQLNLAFTGAIKDEIMDIENLALMLLKVL 213
>gi|315128116|ref|YP_004070119.1| ribosomal biogenesis GTPase [Pseudoalteromonas sp. SM9913]
gi|315016629|gb|ADT69967.1| ribosomal biogenesis GTPase [Pseudoalteromonas sp. SM9913]
Length = 314
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 108/224 (48%), Gaps = 33/224 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A I + MP +D+I+EV DARIP+SSE LR P I +LNK
Sbjct: 5 WFPGHMNKARNEIKEIMPQMDVIIEVLDARIPYSSENPMVATLREGKPV-----IKILNK 59
Query: 84 MDLASPTQFKEWITFFDQQN---CPSFGVNSHNK-DNVKEFLKFLQAHVRNLRKSDYDAS 139
DLA P + W +F+Q+N +FG + + + E K L H K
Sbjct: 60 ADLADPKMTQTWKDYFEQENGVKAIAFGNDKAAEVHRINELCKKLVPHKVGADKQ----- 114
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS L N L GRI A +P TK +K+
Sbjct: 115 ---IKAMIMGIPNVGKSTLINVLA--GRIV---------AKTGNEPAVTKAQQRIKLDD- 159
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
I + DTPG+L P++ + +L TGAI D+ + +E+A Y
Sbjct: 160 -GIMLYDTPGMLWPKVENENSGYRLGATGAIRDTAIEYEEVASY 202
>gi|86608130|ref|YP_476892.1| ribosomal biogenesis GTPase [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86556672|gb|ABD01629.1| GTPase family protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 283
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 109/222 (49%), Gaps = 19/222 (8%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H+A A + + + VD ++EV DARIP +S +L R+L LN+ D
Sbjct: 8 WYPGHIAKAIGQLREELQRVDAVIEVLDARIPLASRHPELGRW--LGEKPRLLALNRADC 65
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNV---KEFLKFLQAHVRNLRKSDYDASSDTV 143
K W +F +Q P + N + + V K+ + L V N R+ V
Sbjct: 66 IEAGDLKAWQEYFLRQGIPVYPTNGRSGEGVNRLKQAVLHLGQSV-NTRRQQRGMRPRAV 124
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
+++G PNVGKSAL N L +GR R A + +PG T+ + +++ +
Sbjct: 125 RAVVVGFPNVGKSALLNRL--LGR---------RAAESAARPGVTRQLRWVRLGGE--LD 171
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
+LD+PGI+PP + D + S LA+ IG++ + +A +FL
Sbjct: 172 LLDSPGIIPPSLPDQQAASLLAICDDIGEAAYDPERVAAHFL 213
>gi|443315548|ref|ZP_21045033.1| ribosome biogenesis GTP-binding protein YlqF [Leptolyngbya sp. PCC
6406]
gi|442784861|gb|ELR94716.1| ribosome biogenesis GTP-binding protein YlqF [Leptolyngbya sp. PCC
6406]
Length = 279
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 110/225 (48%), Gaps = 17/225 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H+A A +A+ D++ VD++LEVRDARIP ++ ++++ +LV+N++D+
Sbjct: 7 WYPGHIAKAEKALLDQLKRVDVVLEVRDARIPLATRHPRIQDW--IGEKGHVLVMNRVDM 64
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAH--VRNLRKSDYDASSDTVT 144
S W T+ QQ + N+ V Q N R+ V
Sbjct: 65 ISTEGRAAWETWLRQQGQVPYFANAQQGKGVSAIAHVAQKAGIAVNERRLSRGMRPRPVR 124
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
+++G PNVGKSAL N L + + +A + G T+ + ++I+ + +
Sbjct: 125 AVVIGFPNVGKSALINRLLKRKVVASARRA-----------GITRQLRWIRISDQ--LEL 171
Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
LD PGILP +IHD + KLA+ IG++ + +A + +L
Sbjct: 172 LDAPGILPAQIHDQDAALKLAICDDIGEASYDNQRVAAALVDLLK 216
>gi|392556943|ref|ZP_10304080.1| GTPase YlqF [Pseudoalteromonas undina NCIMB 2128]
Length = 314
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 108/224 (48%), Gaps = 33/224 (14%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A I + MP +D+I+EV DARIP+SSE LR P I +LNK
Sbjct: 5 WFPGHMNKARNEIKEIMPQMDVIIEVLDARIPYSSENPMVATLREGKPV-----IKILNK 59
Query: 84 MDLASPTQFKEWITFFDQQN---CPSFGVNSHNK-DNVKEFLKFLQAHVRNLRKSDYDAS 139
DLA P + W +F+Q+N +FG + + + E K L H K
Sbjct: 60 ADLADPKMTQTWKDYFEQENGVKAIAFGNDKAAEVHRINELCKKLVPHKVGADKQ----- 114
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
+ M++GIPNVGKS L N L GRI A +P TK +K+
Sbjct: 115 ---IKAMIMGIPNVGKSTLINVLA--GRIV---------AKTGNEPAVTKAQQRIKLDD- 159
Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
I + DTPG+L P++ + +L TGAI D+ + +E+A Y
Sbjct: 160 -GIMLYDTPGMLWPKVENENSGYRLGATGAIRDTAIEYEEVASY 202
>gi|312127967|ref|YP_003992841.1| ribosome biogenesis gtp-binding protein ylqf [Caldicellulosiruptor
hydrothermalis 108]
gi|311777986|gb|ADQ07472.1| ribosome biogenesis GTP-binding protein YlqF [Caldicellulosiruptor
hydrothermalis 108]
Length = 282
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 112/223 (50%), Gaps = 16/223 (7%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY HM A R I + +D+ L + DAR P SS +QL +I VLNK DL
Sbjct: 5 WYPGHMQKAKREILELNKYIDLYLILLDARAPLSSRNEQL--EALIKDKPKIYVLNKSDL 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN-LRKSDYDASSDTVTV 145
A T+ +E++ +F + N + ++S NVK LK + +++ + ++ +
Sbjct: 63 ADETKNQEFVKYFQENNQVAVCIDSLKGTNVKNILKIAENLLKDKIEEAKQKGRKKIIRF 122
Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVL 205
+LGIPNVGKS L N +IT + K A +PG T+ +KI + +L
Sbjct: 123 GVLGIPNVGKSTLIN------KITNSAK-----ARTGDKPGVTRAKQWIKINDY--FEML 169
Query: 206 DTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
DTPGIL P++ D V KL G+I + + +A+ +G++
Sbjct: 170 DTPGILVPKLEDDTVALKLCAIGSIKEELFNKELVAKKTIGMI 212
>gi|117620997|ref|YP_857295.1| ribosomal biogenesis GTPase [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|117562404|gb|ABK39352.1| GTP-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 316
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 110/223 (49%), Gaps = 31/223 (13%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A + IA+ MP VD+I+E+ DARIPFSSE +LR P I VLNK
Sbjct: 5 WFPGHMHKARKEIAEVMPQVDVIIEMLDARIPFSSENPLVPELRGDTPV-----IKVLNK 59
Query: 84 MDLASPTQFKEWITFFDQQN-CPSFGVNSHNKDNVKEFLKFLQAHV--RNLRKSDYDASS 140
DLA P + W+ +Q+ + + + +K+ L + RNL
Sbjct: 60 ADLADPEITELWVAHMEQEKGIKALPLTQQEPEKIKQLLTLCHEMLPERNLELRG----- 114
Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
V M++GIPNVGKS L N+L GRI A + G TK +K+ +
Sbjct: 115 --VRAMIMGIPNVGKSTLINTLA--GRII---------ARTGNEAGVTKSQQRIKLDN-- 159
Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
N+ + DTPG L P+++ +LA+T AI D+ ++A +
Sbjct: 160 NVILTDTPGFLWPKLNPPSCGYRLAITAAIKDTVFDYADIAMF 202
>gi|78485398|ref|YP_391323.1| ribosomal biogenesis GTPase [Thiomicrospira crunogena XCL-2]
gi|78363684|gb|ABB41649.1| Ras superfamily GTP-binding protein YlqF [Thiomicrospira crunogena
XCL-2]
Length = 315
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 110/221 (49%), Gaps = 27/221 (12%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
WY HM A + I + +P VD+I+EV DARIPFSSE LR P + + NK
Sbjct: 5 WYPGHMHKAQKEIREILPQVDMIIEVLDARIPFSSENPMIANLRGDKPT-----LKIFNK 59
Query: 84 MDLASPTQFKEWITFFDQ-QNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P Q + W +F+Q +N + +N+ D + L ++ + RK++ S
Sbjct: 60 SDLADPAQTEAWQAYFEQSKNIKTLALNAQQADRKIQVLGIIKKMIP--RKAE---SVKV 114
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ +++GIPNVGKS L N+L A +P TK + +K+ I
Sbjct: 115 IHALIMGIPNVGKSTLINTL-----------ASRPIAKTGNEPAVTKILQRIKLED--GI 161
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
+ D+PG+L P I + +LA+TG I ++ ++A Y
Sbjct: 162 TLFDSPGMLWPNIENEHSGYRLAITGGIKETAFELPDIASY 202
>gi|333368596|ref|ZP_08460773.1| ribosome biogenesis GTP-binding protein YlqF [Psychrobacter sp.
1501(2011)]
gi|332976790|gb|EGK13620.1| ribosome biogenesis GTP-binding protein YlqF [Psychrobacter sp.
1501(2011)]
Length = 323
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 111/221 (50%), Gaps = 22/221 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
W+ HM A I + MP +D+++EV DARIPFSSE LRN+ I +LNK
Sbjct: 9 WFPGHMNKARNEIKEIMPEMDVVIEVIDARIPFSSENPMVADLRNNKHGGQKPVIKILNK 68
Query: 84 MDLASPTQFKEWITFFDQQN-CPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDT 142
DLA P WI +QQ+ + + + ++V++ ++ + V N +
Sbjct: 69 ADLADPEMTAAWIDHLEQQSQVKAIACDDNKANDVQKIIQLCKHLVPN-----KVGTGRQ 123
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ V+++GIPNVGKS L N+L GR A +P TK +KI + +I
Sbjct: 124 IKVLIMGIPNVGKSTLINTLA--GRSI---------AKTGDEPAVTKSQQLIKIDN--DI 170
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQY 243
+ DTPG+L P+I + +LA TG I D+ ++A Y
Sbjct: 171 MLYDTPGMLWPKIENPNSGFRLAATGGIKDTAFDFSDVAGY 211
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,638,160,616
Number of Sequences: 23463169
Number of extensions: 186498198
Number of successful extensions: 616083
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1720
Number of HSP's successfully gapped in prelim test: 2845
Number of HSP's that attempted gapping in prelim test: 606172
Number of HSP's gapped (non-prelim): 5747
length of query: 298
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 157
effective length of database: 9,050,888,538
effective search space: 1420989500466
effective search space used: 1420989500466
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.9 bits)