BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022351
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 112/226 (49%), Gaps = 21/226 (9%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
W+ HMA A R + +++ L+DI+ E+ DARIP SS + + + RI++LNK D
Sbjct: 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI--LKNKPRIMLLNKADK 62
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASSDT 142
A ++W F+ Q S +NS N + + + + LQ +R +
Sbjct: 63 ADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRA-- 120
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ +++GIPNVGKS L N L K A +PG T +K+ +
Sbjct: 121 IRALIIGIPNVGKSTLINRL-----------AKKNIAKTGDRPGITTSQQWVKVGKE--L 167
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
+LDTPGIL P+ D V +LA+TGAI DS + +++A + L L
Sbjct: 168 ELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFL 213
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 104/204 (50%), Gaps = 32/204 (15%)
Query: 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
WY H+ A R I D + LV+ ++EVRDAR PF++ + FS I++LNK+D+
Sbjct: 3 WYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV----DFSRKETIILLNKVDI 58
Query: 87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVM 146
A K+W+ FF +Q + +H + K LK K +D + V+
Sbjct: 59 ADEKTTKKWVEFFKKQGKRV--ITTHKGEPRKVLLK----------KLSFDRLA---RVL 103
Query: 147 LLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLD 206
++G+PN GKS + N L KGK R ++V QPG TK I + + + +LD
Sbjct: 104 IVGVPNTGKSTIINKL----------KGK-RASSVGAQPGITKGIQWFSLEN--GVKILD 150
Query: 207 TPGILPPEIHDVEVCSKLALTGAI 230
TPGIL I ++ +KL L G++
Sbjct: 151 TPGILYKNIFSEDLAAKLLLVGSL 174
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 17/93 (18%)
Query: 124 LQAHVRNLRKSDYDASS-----DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRH 178
L+ ++ L + D S D + V ++G PNVGKS L N++ R
Sbjct: 157 LETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKER----------- 205
Query: 179 ATVSPQPGETKDIYSLKIASHPNIYV-LDTPGI 210
A VSP PG T+D ++ YV +DT G+
Sbjct: 206 ALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL 238
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 11/47 (23%)
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKD 190
TV+++G PNVGKS L N L K + A V + G T+D
Sbjct: 3 TVLIVGRPNVGKSTLFNKLV-----------KKKKAIVEDEEGVTRD 38
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 15/77 (19%)
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN--- 201
V ++G PNVGKS L N+L +G + + +SP+ G T+ + L + + PN
Sbjct: 13 VAIVGKPNVGKSTLLNNL--LGT---------KVSIISPKAGTTR-MRVLGVKNIPNEAQ 60
Query: 202 IYVLDTPGILPPEIHDV 218
I LDTPGI P+ DV
Sbjct: 61 IIFLDTPGIYEPKKSDV 77
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 15/77 (19%)
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN--- 201
V ++G PNVGKS L N+L +G + + +SP+ G T+ + L + + PN
Sbjct: 12 VAIVGKPNVGKSTLLNNL--LGT---------KVSIISPKAGTTR-MRVLGVKNIPNEAQ 59
Query: 202 IYVLDTPGILPPEIHDV 218
I LDTPGI P+ DV
Sbjct: 60 IIFLDTPGIYEPKKSDV 76
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 14/68 (20%)
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNI 202
V ++G PNVGKS+L N+ Q R A V+ PG T+D+ L + P +
Sbjct: 227 VAIVGRPNVGKSSLLNAWSQSDR-----------AIVTDLPGTTRDVVESQLVVGGIP-V 274
Query: 203 YVLDTPGI 210
VLDT GI
Sbjct: 275 QVLDTAGI 282
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 17/92 (18%)
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGET-KDIYSLKIASHPNIY 203
V ++G PNVGKS L N+L + + A +SP+P T K + + I
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGV-----------KVAPISPRPQTTRKRLRGILTEGRRQIV 58
Query: 204 VLDTPGILPP-----EIHDVEVCSKLALTGAI 230
+DTPG+ P E D EV LA A+
Sbjct: 59 FVDTPGLHKPMDALGEFMDQEVYEALADVNAV 90
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY- 203
++++G PNVGKS L N L R A V+ PG T+D+ S +I ++
Sbjct: 246 MVIVGKPNVGKSTLLNRLLNEDR-----------AIVTDIPGTTRDVISEEIVIRGILFR 294
Query: 204 VLDTPGI 210
++DT G+
Sbjct: 295 IVDTAGV 301
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 61/135 (45%), Gaps = 18/135 (13%)
Query: 78 ILVLNKMDLASPTQFKEWI-TFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDY 136
+L +NK+D T+ + I F+ + ++ + + + L + H +N+ ++ Y
Sbjct: 135 VLAVNKLD---NTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKY 191
Query: 137 DASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI 196
+ + + L+G PNVGKS+L N++ R+ VS G T+D
Sbjct: 192 N--EEVIQFCLIGRPNVGKSSLVNAMLGEERV-----------IVSNVAGTTRDAVDTSF 238
Query: 197 ASHPNIYVL-DTPGI 210
+ +V+ DT G+
Sbjct: 239 TYNQQEFVIVDTAGM 253
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKD-IYSLKIASHPNI 202
V ++G PNVGKS + N + A E R + V PG T+D IYS + +
Sbjct: 25 VVAIVGRPNVGKSTIFNRI-------AGE----RISIVEDTPGVTRDRIYSSAEWLNYDF 73
Query: 203 YVLDTPGI 210
++DT GI
Sbjct: 74 NLIDTGGI 81
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
V+++G PNVGKS+L N L K R A V+ PG T+D+ + + ++
Sbjct: 4 VVIVGRPNVGKSSLFNRLL-----------KKRSAVVADVPGVTRDLKEGVVETDRGRFL 52
Query: 205 L-DTPGI 210
L DT G+
Sbjct: 53 LVDTGGL 59
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 14/73 (19%)
Query: 141 DTVTVMLLGIPNVGKSALANSL--HQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
+++TV++LG VGKS+ NSL Q+ R++ + LR VS G
Sbjct: 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG------------ 82
Query: 199 HPNIYVLDTPGIL 211
I ++DTPG++
Sbjct: 83 GFTINIIDTPGLV 95
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 14/73 (19%)
Query: 141 DTVTVMLLGIPNVGKSALANSL--HQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
+++TV++LG VGKS+ NSL Q+ R++ + LR VS G
Sbjct: 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG------------ 82
Query: 199 HPNIYVLDTPGIL 211
I ++DTPG++
Sbjct: 83 GFTINIIDTPGLV 95
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 14/73 (19%)
Query: 141 DTVTVMLLGIPNVGKSALANSL--HQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
+++TV++LG VGKS+ NSL Q+ R++ + LR VS G
Sbjct: 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG------------ 82
Query: 199 HPNIYVLDTPGIL 211
I ++DTPG++
Sbjct: 83 GFTINIIDTPGLV 95
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 14/73 (19%)
Query: 141 DTVTVMLLGIPNVGKSALANSL--HQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS 198
+++TV++LG VGKS+ NSL Q+ R++ + LR VS G
Sbjct: 34 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG------------ 81
Query: 199 HPNIYVLDTPGIL 211
I ++DTPG++
Sbjct: 82 GFTINIIDTPGLV 94
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 21/124 (16%)
Query: 186 GETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDS--------FVGG 237
G D L A NI V TPG+L ++ D+ + LA+ +GD + G
Sbjct: 101 GVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRLVREGRWAAG 160
Query: 238 KELAQYFLGILNFSDEYKKWAKFSINQINKPLTLHHKADQSS------GSESGMIW-KRQ 290
++L L S + K+ + QI + L +A S + SG+ W Q
Sbjct: 161 EQLP------LGHSPKGKRIGVLGLGQIGRALASRAEAFGXSVRYWNRSTLSGVDWIAHQ 214
Query: 291 NPTD 294
+P D
Sbjct: 215 SPVD 218
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 78 ILVLNKMDLASP-------TQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130
I+V NK+DL Q KE++ +N P +++H++ N+ LK +Q +
Sbjct: 139 IIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198
Query: 131 LRKSDYDAS 139
K D DA+
Sbjct: 199 -PKRDPDAT 206
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 119 EFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANS 161
+ L + H +N+ ++ Y+ + + L+G PNVGKS+L N+
Sbjct: 154 DLLDAVAEHFKNIPETKYN--EEVIQFCLIGRPNVGKSSLVNA 194
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKD-IYSLKIASHPNI 202
V ++G PNVGKS + N + A E R + V PG T+D IYS + +
Sbjct: 5 VVAIVGRPNVGKSTIFNRI-------AGE----RISIVEDTPGVTRDRIYSSAEWLNYDF 53
Query: 203 YVLDTPGI 210
++DT GI
Sbjct: 54 NLIDTGGI 61
>pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 76/182 (41%), Gaps = 34/182 (18%)
Query: 46 VDIILEVRDARIPFSSEF--DQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQN 103
VD ++ V ++P +S + D+ + ++V+NKMDL ++ + +
Sbjct: 85 VDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYS 144
Query: 104 --CPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANS 161
P ++ ++E ++L+ + + G+ VGKS+L N+
Sbjct: 145 GLYPIVKTSAKTGMGIEELKEYLKGKISTM----------------AGLSGVGKSSLLNA 188
Query: 162 LHQIGRITAAE-KGKL---RHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHD 217
++ ++ +E KL RH T + Q + YV+DTPG EI+D
Sbjct: 189 INPGLKLRVSEVSEKLQRGRHTTTTAQ------LLKFDFGG----YVVDTPGFANLEIND 238
Query: 218 VE 219
+E
Sbjct: 239 IE 240
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Query: 145 VMLLGIPNVGKSALANS-LHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
+ ++G PNVGKS L N L Q IT+ + RH V ++ IY
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE----------GAYQAIY 60
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGD 232
V DTPG+ E + A + +IGD
Sbjct: 61 V-DTPGLHMEEKRAINRLMNKAASSSIGD 88
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Query: 145 VMLLGIPNVGKSALANS-LHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
+ ++G PNVGKS L N L Q IT+ + RH V ++ IY
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE----------GAYQAIY 57
Query: 204 VLDTPGILPPEIHDVEVCSKLALTGAIGD 232
V DTPG+ E + A + +IGD
Sbjct: 58 V-DTPGLHMEEKRAINRLMNKAASSSIGD 85
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKD-IYSLKIAS 198
S+ V+ ++ G PN GKS L N+L +G+ A VS PG T+D I I
Sbjct: 231 SEGVSTVIAGKPNAGKSTLLNTL--LGQ---------ERAIVSHMPGTTRDYIEECFIHD 279
Query: 199 HPNIYVLDTPGI 210
+ DT G+
Sbjct: 280 KTMFRLTDTAGL 291
>pdb|1QPA|A Chain A, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
pdb|1QPA|B Chain B, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
Length = 345
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 193 SLKIASHPNIYVLDTPGILPPEI--HDVEVCSKLALTGAIGDSFVGGKELAQYFLG 246
S++ HPNI + + I P I H V +A GA+G S G Q+FLG
Sbjct: 77 SIETTYHPNIGLDEVVAIQKPFIAKHGVTPGDFIAFAGAVGVSNCPGAPQMQFFLG 132
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 147 LLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPG 186
++G+PNVGKS L N+L + G E T+ P G
Sbjct: 7 IVGLPNVGKSTLFNALTKAG----IEAANYPFCTIEPNTG 42
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 13/69 (18%)
Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
T++L G PNVGKS+ N + + + V TK++Y N Y
Sbjct: 31 TIILSGAPNVGKSSFMNIVSR------------ANVDVQSYSFTTKNLYVGHFDHKLNKY 78
Query: 204 -VLDTPGIL 211
++DTPG+L
Sbjct: 79 QIIDTPGLL 87
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLK 195
+ V ++G+PNVGKS L N+L + + A V P E + +Y+L+
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQ 54
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLK 195
+ V ++G+PNVGKS L N+L + + A V P E + +Y+L+
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQ 54
>pdb|2YU1|A Chain A, Crystal Structure Of Hjhdm1a Complexed With
A-ketoglutarate
pdb|2YU2|A Chain A, Crystal Structure Of Hjhdm1a Without A-Ketoglutarate
Length = 451
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 210 ILPPEIHDVEVCSKLALTGAIGDSFVGGK 238
++PP H++E+ L+G+ GD F+G +
Sbjct: 233 LIPPTAHNLELYENWLLSGSQGDIFLGDR 261
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
V +G NVGKS+L N+L + A VS PG+T+ I + S Y
Sbjct: 26 VAFVGRSNVGKSSLLNALFN-----------RKIAFVSKTPGKTRSINFYLVNSK--YYF 72
Query: 205 LDTPG 209
+D PG
Sbjct: 73 VDLPG 77
>pdb|3MD0|A Chain A, Crystal Structure Of ArginineORNITHINE TRANSPORT SYSTEM
ATPASE FROM Mycobacterium Tuberculosis Bound To Gdp (A
Ras-Like Gtpase Superfamily Protein)
pdb|3P32|A Chain A, Hydrolysis Of Gtp To Gdp By An Mcm-Associated And Meab-
And Mmaa-Like G-Protein From Mycobacterium Tuberculosis
pdb|4GT1|A Chain A, Crystal Structure Of A Meab- And Mmaa-Like Gtpase From
Mycobacterium Tuberculosis Bound To 2'-Deoxyguanosine
Diphosphate
Length = 355
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 17/74 (22%)
Query: 145 VMLLGIPNVGKSALANSL--HQIGRITAAEKGKLRHATVSPQPGETKDIYSL-------- 194
V + G+P VGKS +L H I E+G R A ++ P T+ S+
Sbjct: 82 VGITGVPGVGKSTAIEALGMHLI------ERGH-RVAVLAVDPSSTRTGGSILGDKTRMA 134
Query: 195 KIASHPNIYVLDTP 208
++A HPN Y+ +P
Sbjct: 135 RLAVHPNAYIRPSP 148
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGE-TKDIYSLKIASHPN 201
V V L G PNVGK++L N+L + A G TV + G T Y++ + P
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPG----VTVEKKEGVFTYKGYTINLIDLPG 61
Query: 202 IYVL 205
Y L
Sbjct: 62 TYSL 65
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 14/68 (20%)
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNI 202
V++ G PN GKS+L N+L GR A V+ G T+D+ + I P +
Sbjct: 7 VVIAGRPNAGKSSLLNAL--AGR---------EAAIVTDIAGTTRDVLREHIHIDGMP-L 54
Query: 203 YVLDTPGI 210
+++DT G+
Sbjct: 55 HIIDTAGL 62
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 14/68 (20%)
Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNI 202
V++ G PN GKS+L N+L GR A V+ G T+D+ + I P +
Sbjct: 7 VVIAGRPNAGKSSLLNAL--AGR---------EAAIVTDIAGTTRDVLREHIHIDGXP-L 54
Query: 203 YVLDTPGI 210
+++DT G+
Sbjct: 55 HIIDTAGL 62
>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 137 DASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI 196
+ S + V + G GKS+ N+L IG E+G + V T + + K
Sbjct: 64 EIDSSVLNVAVTGETGSGKSSFINTLRGIGN---EEEGAAKTGVVEV----TMERHPYKH 116
Query: 197 ASHPNIYVLDTPGI----LPPEIH 216
+ PN+ D PGI PP+ +
Sbjct: 117 PNIPNVVFWDLPGIGSTNFPPDTY 140
>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 422
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 137 DASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI 196
+ S + V + G GKS+ N+L IG E+G + V T + + K
Sbjct: 64 EIDSSVLNVAVTGETGSGKSSFINTLRGIGN---EEEGAAKTGVVEV----TMERHPYKH 116
Query: 197 ASHPNIYVLDTPGI----LPPEIH 216
+ PN+ D PGI PP+ +
Sbjct: 117 PNIPNVVFWDLPGIGSTNFPPDTY 140
>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 137 DASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI 196
+ S + V + G GKS+ N+L IG E+G + V T + + K
Sbjct: 64 EIDSSVLNVAVTGETGSGKSSFINTLRGIGN---EEEGAAKTGVVEV----TMERHPYKH 116
Query: 197 ASHPNIYVLDTPGI----LPPEIH 216
+ PN+ D PGI PP+ +
Sbjct: 117 PNIPNVVFWDLPGIGSTNFPPDTY 140
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 137 DASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI 196
+ S + V + G GKS+ N+L IG E+G + V T + + K
Sbjct: 64 EIDSSVLNVAVTGETGSGKSSFINTLRGIGN---EEEGAAKTGVVEV----TMERHPYKH 116
Query: 197 ASHPNIYVLDTPGI----LPPEIH 216
+ PN+ D PGI PP+ +
Sbjct: 117 PNIPNVVFWDLPGIGSTNFPPDTY 140
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGE-TKDIYSLKIASHPN 201
V V L G PNVGK++L N+L + A G TV + G T Y++ + P
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPG----VTVEKKEGVFTYKGYTINLIDLPG 61
Query: 202 IYVL 205
Y L
Sbjct: 62 TYSL 65
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
+ ++L+G GKSA NS+ +GR K+ H+ + + K +
Sbjct: 30 LRIVLVGKTGAGKSATGNSI--LGR-------KVFHSGTAAKSITKKCEKRSSSWKETEL 80
Query: 203 YVLDTPGILPPEIHDVEVCSKL 224
V+DTPGI E+ + E ++
Sbjct: 81 VVVDTPGIFDTEVPNAETSKEI 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,912,585
Number of Sequences: 62578
Number of extensions: 355964
Number of successful extensions: 1097
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1075
Number of HSP's gapped (non-prelim): 44
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)