Query 022351
Match_columns 298
No_of_seqs 364 out of 3242
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 02:52:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2485 Conserved ATP/GTP bind 100.0 1.8E-43 3.9E-48 313.0 21.0 249 7-264 5-260 (335)
2 PRK09563 rbgA GTPase YlqF; Rev 100.0 1.4E-41 3E-46 309.1 24.3 234 25-273 4-241 (287)
3 TIGR03596 GTPase_YlqF ribosome 100.0 2.6E-41 5.6E-46 305.7 24.5 234 25-273 1-238 (276)
4 COG1161 Predicted GTPases [Gen 100.0 2.3E-35 5E-40 271.6 20.3 209 23-248 12-226 (322)
5 cd01856 YlqF YlqF. Proteins o 100.0 6.6E-32 1.4E-36 227.6 20.1 170 27-211 1-171 (171)
6 cd01858 NGP_1 NGP-1. Autoanti 100.0 1.3E-29 2.9E-34 210.6 17.2 153 39-210 2-157 (157)
7 KOG2484 GTPase [General functi 100.0 8.1E-30 1.8E-34 232.2 12.2 222 20-263 121-358 (435)
8 PRK12289 GTPase RsgA; Reviewed 100.0 2.6E-29 5.7E-34 233.2 15.3 184 39-270 83-280 (352)
9 TIGR00157 ribosome small subun 100.0 3.4E-29 7.3E-34 222.7 13.3 193 40-277 31-233 (245)
10 cd01857 HSR1_MMR1 HSR1/MMR1. 100.0 2.9E-27 6.2E-32 193.2 15.8 138 36-213 2-141 (141)
11 PRK12288 GTPase RsgA; Reviewed 100.0 1.8E-27 3.8E-32 220.9 15.6 188 42-277 117-319 (347)
12 cd04178 Nucleostemin_like Nucl 99.9 6.4E-27 1.4E-31 197.3 15.9 145 47-210 1-172 (172)
13 COG1160 Predicted GTPases [Gen 99.9 1.7E-27 3.6E-32 222.0 13.0 168 33-215 71-241 (444)
14 KOG1424 Predicted GTP-binding 99.9 4.8E-27 1E-31 219.9 15.5 172 33-217 162-376 (562)
15 cd01849 YlqF_related_GTPase Yl 99.9 4.2E-26 9.1E-31 189.2 16.9 151 47-210 1-155 (155)
16 PRK00098 GTPase RsgA; Reviewed 99.9 3.2E-26 7E-31 209.2 14.9 190 42-277 77-278 (298)
17 cd01859 MJ1464 MJ1464. This f 99.9 2.3E-25 5E-30 184.7 18.1 152 38-210 5-156 (156)
18 cd01855 YqeH YqeH. YqeH is an 99.9 1.3E-25 2.9E-30 192.2 16.9 158 35-210 24-190 (190)
19 COG1162 Predicted GTPases [Gen 99.9 7E-26 1.5E-30 202.8 15.3 195 37-276 71-277 (301)
20 cd01854 YjeQ_engC YjeQ/EngC. 99.9 5E-26 1.1E-30 206.9 13.1 195 41-275 74-273 (287)
21 KOG2423 Nucleolar GTPase [Gene 99.9 2.1E-25 4.6E-30 202.7 14.6 193 30-245 198-395 (572)
22 PRK13796 GTPase YqeH; Provisio 99.9 1.1E-23 2.5E-28 197.4 19.2 156 36-213 59-223 (365)
23 TIGR03597 GTPase_YqeH ribosome 99.9 3.1E-23 6.8E-28 194.1 19.4 158 34-213 52-217 (360)
24 TIGR03594 GTPase_EngA ribosome 99.9 1.9E-20 4.1E-25 179.4 17.8 167 33-214 66-234 (429)
25 PRK01889 GTPase RsgA; Reviewed 99.8 2E-21 4.4E-26 181.5 9.3 151 43-218 110-265 (356)
26 PRK03003 GTP-binding protein D 99.8 1.9E-20 4E-25 181.5 15.4 163 35-212 107-271 (472)
27 PF03193 DUF258: Protein of un 99.8 6.9E-22 1.5E-26 163.5 4.2 141 93-277 2-149 (161)
28 PRK00093 GTP-binding protein D 99.8 5.5E-20 1.2E-24 176.6 17.1 163 36-214 71-235 (435)
29 PRK09518 bifunctional cytidyla 99.8 1.8E-19 3.8E-24 182.5 16.5 165 35-213 344-511 (712)
30 COG0486 ThdF Predicted GTPase 99.5 1.1E-14 2.5E-19 136.7 7.4 93 140-252 215-308 (454)
31 PF02421 FeoB_N: Ferrous iron 99.5 1.2E-13 2.5E-18 114.2 7.3 64 143-218 1-65 (156)
32 COG1159 Era GTPase [General fu 99.5 1.3E-13 2.7E-18 123.1 7.5 68 141-219 5-73 (298)
33 COG1084 Predicted GTPase [Gene 99.4 9.1E-14 2E-18 125.2 5.4 70 140-221 166-236 (346)
34 COG0218 Predicted GTPase [Gene 99.4 9.2E-13 2E-17 111.7 9.8 66 140-217 22-87 (200)
35 KOG1191 Mitochondrial GTPase [ 99.4 1.4E-12 3E-17 122.8 8.0 64 140-214 266-330 (531)
36 COG1160 Predicted GTPases [Gen 99.3 1E-12 2.2E-17 123.3 3.8 60 143-214 4-65 (444)
37 PF01926 MMR_HSR1: 50S ribosom 99.3 4.9E-12 1.1E-16 99.3 6.7 61 144-215 1-62 (116)
38 TIGR00436 era GTP-binding prot 99.2 4.8E-11 1.1E-15 107.7 8.0 60 144-214 2-62 (270)
39 COG1163 DRG Predicted GTPase [ 99.2 7.9E-12 1.7E-16 112.4 1.1 117 142-280 63-180 (365)
40 cd01852 AIG1 AIG1 (avrRpt2-ind 99.1 9E-11 2E-15 100.8 7.4 63 143-216 1-65 (196)
41 cd01853 Toc34_like Toc34-like 99.1 1.2E-10 2.5E-15 103.9 8.1 64 140-214 29-93 (249)
42 PF00009 GTP_EFTU: Elongation 99.1 2.2E-10 4.8E-15 97.7 8.1 103 26-129 75-187 (188)
43 PRK12298 obgE GTPase CgtA; Rev 99.1 1.1E-10 2.4E-15 110.4 6.5 59 144-214 161-221 (390)
44 KOG1423 Ras-like GTPase ERA [C 99.1 1.5E-10 3.3E-15 103.4 6.2 65 140-215 70-135 (379)
45 PTZ00258 GTP-binding protein; 99.0 3.4E-10 7.3E-15 106.6 6.9 63 140-214 19-99 (390)
46 TIGR03156 GTP_HflX GTP-binding 99.0 7.8E-10 1.7E-14 103.4 9.1 60 141-212 188-249 (351)
47 PRK05291 trmE tRNA modificatio 99.0 1.1E-09 2.3E-14 105.8 9.1 63 140-213 213-276 (449)
48 PRK00089 era GTPase Era; Revie 99.0 7.6E-10 1.7E-14 100.9 7.7 62 142-214 5-67 (292)
49 TIGR00450 mnmE_trmE_thdF tRNA 99.0 1.2E-09 2.6E-14 105.2 9.3 63 140-213 201-264 (442)
50 cd01900 YchF YchF subfamily. 99.0 5.2E-10 1.1E-14 100.9 5.8 58 145-214 1-76 (274)
51 TIGR03598 GTPase_YsxC ribosome 99.0 1.9E-09 4.2E-14 91.0 8.7 64 140-215 16-79 (179)
52 TIGR00991 3a0901s02IAP34 GTP-b 99.0 1.5E-09 3.2E-14 98.9 8.4 65 140-215 36-101 (313)
53 PRK12299 obgE GTPase CgtA; Rev 99.0 7.7E-10 1.7E-14 102.7 6.7 59 143-213 159-219 (335)
54 PRK09601 GTP-binding protein Y 99.0 8.1E-10 1.7E-14 102.9 6.7 59 143-213 3-79 (364)
55 cd04165 GTPBP1_like GTPBP1-lik 99.0 3.8E-09 8.3E-14 92.8 9.7 100 26-126 89-220 (224)
56 PRK15494 era GTPase Era; Provi 99.0 2E-09 4.3E-14 100.3 8.2 63 141-214 51-114 (339)
57 COG1159 Era GTPase [General fu 98.9 8.6E-09 1.9E-13 92.4 11.6 95 36-130 76-173 (298)
58 PRK00454 engB GTP-binding prot 98.9 2.9E-09 6.4E-14 90.7 8.3 63 140-214 22-84 (196)
59 COG0370 FeoB Fe2+ transport sy 98.9 3.7E-09 8E-14 103.8 9.7 63 143-217 4-67 (653)
60 PF05049 IIGP: Interferon-indu 98.9 1.5E-09 3.3E-14 101.2 6.4 88 117-218 17-104 (376)
61 PRK12297 obgE GTPase CgtA; Rev 98.9 2.1E-09 4.5E-14 102.6 6.9 57 144-212 160-218 (424)
62 cd04171 SelB SelB subfamily. 98.9 8E-09 1.7E-13 84.9 9.6 100 26-125 55-162 (164)
63 cd04164 trmE TrmE (MnmE, ThdF, 98.9 3.4E-09 7.3E-14 86.3 7.2 62 142-214 1-63 (157)
64 TIGR00993 3a0901s04IAP86 chlor 98.9 2.9E-09 6.3E-14 104.7 7.9 65 141-216 117-182 (763)
65 PRK15467 ethanolamine utilizat 98.9 2.4E-08 5.2E-13 82.9 11.9 94 34-130 53-148 (158)
66 PRK04213 GTP-binding protein; 98.9 3.5E-09 7.5E-14 90.9 7.1 57 141-212 8-64 (201)
67 cd01894 EngA1 EngA1 subfamily. 98.9 2E-08 4.2E-13 81.9 11.1 88 37-127 68-156 (157)
68 PRK11058 GTPase HflX; Provisio 98.9 3.9E-09 8.5E-14 101.1 7.9 58 143-212 198-257 (426)
69 cd01889 SelB_euk SelB subfamil 98.9 9.3E-09 2E-13 87.8 9.1 101 28-129 75-186 (192)
70 PF04548 AIG1: AIG1 family; I 98.9 2.3E-09 5E-14 93.4 5.5 66 143-218 1-67 (212)
71 PRK12296 obgE GTPase CgtA; Rev 98.9 2.5E-09 5.5E-14 103.5 6.2 59 143-213 160-219 (500)
72 TIGR02729 Obg_CgtA Obg family 98.9 3.1E-09 6.6E-14 98.6 6.2 59 143-213 158-218 (329)
73 cd01890 LepA LepA subfamily. 98.9 7.4E-09 1.6E-13 86.8 7.9 101 27-128 72-176 (179)
74 cd01898 Obg Obg subfamily. Th 98.9 3.3E-09 7.1E-14 88.1 5.6 57 144-212 2-60 (170)
75 cd01888 eIF2_gamma eIF2-gamma 98.9 1.5E-08 3.3E-13 87.5 9.8 101 28-129 90-199 (203)
76 KOG1489 Predicted GTP-binding 98.8 8.3E-10 1.8E-14 99.2 1.0 100 143-264 197-303 (366)
77 KOG1490 GTP-binding protein CR 98.8 2.6E-09 5.7E-14 101.0 4.3 93 140-252 166-259 (620)
78 TIGR02528 EutP ethanolamine ut 98.8 4.6E-08 1E-12 79.0 11.0 87 36-125 53-141 (142)
79 PF10662 PduV-EutP: Ethanolami 98.8 4.1E-08 8.8E-13 79.8 10.5 86 37-125 55-142 (143)
80 TIGR00436 era GTP-binding prot 98.8 2.3E-08 5.1E-13 90.2 9.9 94 36-130 70-165 (270)
81 KOG1486 GTP-binding protein DR 98.8 1E-09 2.2E-14 95.7 0.5 116 141-278 61-177 (364)
82 cd01897 NOG NOG1 is a nucleola 98.8 9.2E-09 2E-13 85.3 6.3 57 144-212 2-59 (168)
83 COG0536 Obg Predicted GTPase [ 98.8 1.8E-09 4E-14 98.0 2.1 59 144-214 161-221 (369)
84 TIGR03156 GTP_HflX GTP-binding 98.8 5E-08 1.1E-12 91.3 11.1 96 27-126 250-349 (351)
85 cd04163 Era Era subfamily. Er 98.8 2.1E-08 4.5E-13 82.0 7.5 63 142-215 3-66 (168)
86 cd01878 HflX HflX subfamily. 98.8 2.2E-08 4.8E-13 86.2 8.0 60 141-212 40-101 (204)
87 PRK00089 era GTPase Era; Revie 98.8 8.9E-08 1.9E-12 87.3 12.1 95 36-130 75-172 (292)
88 COG2262 HflX GTPases [General 98.8 1.2E-07 2.5E-12 88.4 12.6 118 25-154 251-372 (411)
89 TIGR00475 selB selenocysteine- 98.8 4.1E-08 9E-13 97.6 10.3 115 16-131 41-168 (581)
90 cd01895 EngA2 EngA2 subfamily. 98.8 2E-08 4.4E-13 82.9 6.9 61 142-213 2-63 (174)
91 cd01894 EngA1 EngA1 subfamily. 98.7 1.4E-08 3.1E-13 82.7 5.7 57 146-213 1-58 (157)
92 COG3596 Predicted GTPase [Gene 98.7 8.2E-09 1.8E-13 91.4 4.5 68 140-218 37-105 (296)
93 cd04104 p47_IIGP_like p47 (47- 98.7 2.2E-08 4.7E-13 86.2 7.1 67 143-216 2-68 (197)
94 KOG1547 Septin CDC10 and relat 98.7 4.9E-08 1.1E-12 84.8 9.0 87 115-213 27-117 (336)
95 cd00881 GTP_translation_factor 98.7 3.5E-08 7.6E-13 83.0 7.9 100 28-128 69-186 (189)
96 PTZ00327 eukaryotic translatio 98.7 5.1E-08 1.1E-12 94.1 9.8 104 26-130 122-234 (460)
97 PRK09602 translation-associate 98.7 1.9E-08 4.1E-13 95.5 6.7 60 143-214 2-86 (396)
98 cd01878 HflX HflX subfamily. 98.7 1.8E-07 3.8E-12 80.5 12.0 91 34-127 109-203 (204)
99 cd04124 RabL2 RabL2 subfamily. 98.7 5.2E-08 1.1E-12 80.7 8.4 104 26-130 53-159 (161)
100 PRK09554 feoB ferrous iron tra 98.7 2.4E-08 5.2E-13 102.0 7.6 59 143-213 4-63 (772)
101 cd01896 DRG The developmentall 98.7 2.3E-08 5.1E-13 88.4 6.6 58 144-213 2-60 (233)
102 PRK10512 selenocysteinyl-tRNA- 98.7 9.3E-08 2E-12 95.6 11.2 103 27-130 57-167 (614)
103 KOG1249 Predicted GTPases [Gen 98.7 3.2E-08 6.8E-13 94.5 7.4 168 16-196 71-267 (572)
104 COG0486 ThdF Predicted GTPase 98.7 7E-08 1.5E-12 91.3 9.6 123 4-130 230-377 (454)
105 cd01851 GBP Guanylate-binding 98.7 3.8E-08 8.3E-13 86.5 7.4 69 140-217 5-77 (224)
106 cd01879 FeoB Ferrous iron tran 98.7 1.6E-08 3.6E-13 82.6 4.4 55 147-214 1-57 (158)
107 smart00177 ARF ARF-like small 98.7 6.6E-08 1.4E-12 81.4 8.2 103 26-128 61-173 (175)
108 cd04149 Arf6 Arf6 subfamily. 98.7 5.4E-08 1.2E-12 81.4 7.6 99 27-125 58-166 (168)
109 cd01876 YihA_EngB The YihA (En 98.7 4.2E-08 9.1E-13 80.4 6.7 58 145-214 2-59 (170)
110 PLN00223 ADP-ribosylation fact 98.7 1E-07 2.2E-12 80.9 9.0 104 26-129 65-178 (181)
111 PRK15494 era GTPase Era; Provi 98.7 8.4E-08 1.8E-12 89.4 9.2 94 36-130 122-217 (339)
112 cd04158 ARD1 ARD1 subfamily. 98.7 5.1E-08 1.1E-12 81.4 7.0 105 26-130 47-162 (169)
113 cd04154 Arl2 Arl2 subfamily. 98.7 6E-08 1.3E-12 81.2 7.3 99 27-125 63-171 (173)
114 cd01881 Obg_like The Obg-like 98.7 2.4E-08 5.3E-13 83.1 4.8 54 147-212 1-56 (176)
115 cd04157 Arl6 Arl6 subfamily. 98.7 7.9E-08 1.7E-12 79.0 7.8 99 26-125 49-160 (162)
116 cd04150 Arf1_5_like Arf1-Arf5- 98.7 6.8E-08 1.5E-12 80.0 7.1 100 26-125 48-157 (159)
117 cd00880 Era_like Era (E. coli 98.6 2.2E-07 4.7E-12 74.9 9.8 92 36-127 66-162 (163)
118 cd01899 Ygr210 Ygr210 subfamil 98.6 3.9E-08 8.5E-13 90.7 5.9 57 145-213 1-82 (318)
119 cd04151 Arl1 Arl1 subfamily. 98.6 1E-07 2.3E-12 78.4 7.9 96 29-125 51-156 (158)
120 cd04163 Era Era subfamily. Er 98.6 2.1E-07 4.5E-12 76.0 9.6 91 37-127 74-167 (168)
121 cd04160 Arfrp1 Arfrp1 subfamil 98.6 8.1E-08 1.8E-12 79.5 7.2 98 27-125 55-165 (167)
122 cd01884 EF_Tu EF-Tu subfamily. 98.6 1.4E-07 3.1E-12 81.1 8.9 90 27-117 71-171 (195)
123 PTZ00099 rab6; Provisional 98.6 1.3E-07 2.9E-12 79.9 8.5 105 26-130 33-143 (176)
124 cd04145 M_R_Ras_like M-Ras/R-R 98.6 1.2E-07 2.5E-12 78.1 7.9 101 27-127 55-162 (164)
125 cd04156 ARLTS1 ARLTS1 subfamil 98.6 9.8E-08 2.1E-12 78.4 7.4 100 26-125 48-158 (160)
126 TIGR03594 GTPase_EngA ribosome 98.6 1.7E-07 3.8E-12 89.9 10.1 93 38-130 247-345 (429)
127 cd04127 Rab27A Rab27a subfamil 98.6 2.6E-07 5.6E-12 77.6 9.9 103 26-128 67-176 (180)
128 cd01895 EngA2 EngA2 subfamily. 98.6 2.5E-07 5.4E-12 76.3 9.7 88 39-126 78-172 (174)
129 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.6 1.8E-07 3.8E-12 79.4 8.9 105 26-130 56-171 (183)
130 cd01891 TypA_BipA TypA (tyrosi 98.6 1.1E-07 2.3E-12 81.4 7.6 93 27-119 70-172 (194)
131 PRK09866 hypothetical protein; 98.6 2.5E-07 5.3E-12 91.1 10.9 89 38-126 251-350 (741)
132 cd04171 SelB SelB subfamily. 98.6 7.8E-08 1.7E-12 79.0 6.4 59 144-211 2-62 (164)
133 cd04119 RJL RJL (RabJ-Like) su 98.6 2.6E-07 5.5E-12 76.1 9.4 103 26-128 53-166 (168)
134 cd01887 IF2_eIF5B IF2/eIF5B (i 98.6 8E-08 1.7E-12 79.4 6.4 56 144-211 2-61 (168)
135 cd04138 H_N_K_Ras_like H-Ras/N 98.6 1.8E-07 4E-12 76.5 8.4 101 27-127 54-160 (162)
136 smart00178 SAR Sar1p-like memb 98.6 1.3E-07 2.8E-12 80.3 7.3 101 26-126 65-182 (184)
137 cd01887 IF2_eIF5B IF2/eIF5B (i 98.6 3.1E-07 6.7E-12 75.9 9.4 99 29-128 58-165 (168)
138 cd01898 Obg Obg subfamily. Th 98.6 1.3E-07 2.9E-12 78.3 7.1 91 37-127 70-169 (170)
139 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.6 1.4E-07 3E-12 79.2 7.1 96 29-125 67-172 (174)
140 PTZ00133 ADP-ribosylation fact 98.6 2.6E-07 5.6E-12 78.4 8.8 104 27-130 66-179 (182)
141 PRK04000 translation initiatio 98.6 3.4E-07 7.3E-12 87.6 10.6 102 28-130 92-202 (411)
142 PRK12296 obgE GTPase CgtA; Rev 98.6 4.8E-07 1E-11 87.8 11.5 93 38-130 229-341 (500)
143 cd01862 Rab7 Rab7 subfamily. 98.6 5.6E-07 1.2E-11 74.6 10.3 104 27-130 54-168 (172)
144 TIGR00231 small_GTP small GTP- 98.6 1.7E-07 3.7E-12 75.4 7.0 58 143-212 2-62 (161)
145 cd04101 RabL4 RabL4 (Rab-like4 98.6 3.8E-07 8.3E-12 75.1 9.2 102 26-127 56-162 (164)
146 PRK00093 GTP-binding protein D 98.6 3.5E-07 7.5E-12 88.0 10.2 93 38-130 248-345 (435)
147 KOG0462 Elongation factor-type 98.6 1.7E-07 3.6E-12 89.9 7.7 120 10-130 101-236 (650)
148 TIGR03680 eif2g_arch translati 98.6 3E-07 6.4E-12 87.9 9.6 102 27-129 86-196 (406)
149 cd01897 NOG NOG1 is a nucleola 98.6 4.1E-07 8.9E-12 75.3 9.3 83 45-127 79-166 (168)
150 cd04164 trmE TrmE (MnmE, ThdF, 98.6 5.1E-07 1.1E-11 73.3 9.7 85 36-127 71-155 (157)
151 PRK12299 obgE GTPase CgtA; Rev 98.6 3.4E-07 7.4E-12 85.1 9.6 94 37-130 228-329 (335)
152 cd00879 Sar1 Sar1 subfamily. 98.6 2.3E-07 4.9E-12 78.7 7.8 101 27-127 68-189 (190)
153 cd04128 Spg1 Spg1p. Spg1p (se 98.6 3.4E-07 7.3E-12 77.8 8.8 105 26-130 53-167 (182)
154 COG0012 Predicted GTPase, prob 98.6 8.1E-08 1.7E-12 88.8 5.3 60 142-213 2-80 (372)
155 TIGR02729 Obg_CgtA Obg family 98.5 2.8E-07 6.1E-12 85.5 8.7 92 37-128 227-328 (329)
156 cd04139 RalA_RalB RalA/RalB su 98.5 5.7E-07 1.2E-11 73.8 9.6 101 28-129 55-162 (164)
157 cd04121 Rab40 Rab40 subfamily. 98.5 4.6E-07 1E-11 77.5 9.3 103 26-130 59-168 (189)
158 cd01861 Rab6 Rab6 subfamily. 98.5 2E-07 4.4E-12 76.5 6.8 55 144-210 2-59 (161)
159 smart00173 RAS Ras subfamily o 98.5 3.5E-07 7.6E-12 75.4 8.2 103 27-129 53-162 (164)
160 cd01879 FeoB Ferrous iron tran 98.5 5.4E-07 1.2E-11 73.5 9.1 82 44-127 73-155 (158)
161 PTZ00369 Ras-like protein; Pro 98.5 3.5E-07 7.5E-12 77.9 8.2 104 27-130 58-168 (189)
162 cd01865 Rab3 Rab3 subfamily. 98.5 8.8E-07 1.9E-11 73.4 10.3 104 26-129 54-163 (165)
163 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.5 6.9E-07 1.5E-11 75.0 9.7 105 26-130 54-165 (172)
164 cd04136 Rap_like Rap-like subf 98.5 3.5E-07 7.6E-12 75.1 7.8 101 27-127 54-161 (163)
165 smart00175 RAB Rab subfamily o 98.5 7.8E-07 1.7E-11 73.0 9.8 104 26-129 53-162 (164)
166 cd04107 Rab32_Rab38 Rab38/Rab3 98.5 6.7E-07 1.5E-11 76.9 9.7 105 26-130 54-169 (201)
167 cd04175 Rap1 Rap1 subgroup. T 98.5 3.2E-07 7E-12 75.8 7.4 103 26-128 53-162 (164)
168 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.5 4.5E-07 9.7E-12 75.1 8.2 99 28-128 58-163 (166)
169 smart00176 RAN Ran (Ras-relate 98.5 5.2E-07 1.1E-11 77.9 8.7 103 26-130 48-155 (200)
170 cd04120 Rab12 Rab12 subfamily. 98.5 6.3E-07 1.4E-11 77.5 9.3 104 26-129 53-163 (202)
171 cd04109 Rab28 Rab28 subfamily. 98.5 6.6E-07 1.4E-11 77.9 9.5 105 26-130 54-167 (215)
172 cd01863 Rab18 Rab18 subfamily. 98.5 5.8E-07 1.3E-11 73.8 8.6 100 27-126 54-159 (161)
173 cd00878 Arf_Arl Arf (ADP-ribos 98.5 3.8E-07 8.3E-12 74.8 7.4 97 28-125 50-156 (158)
174 cd01850 CDC_Septin CDC/Septin. 98.5 3.6E-07 7.8E-12 82.8 7.8 24 141-164 3-26 (276)
175 cd01892 Miro2 Miro2 subfamily. 98.5 1.9E-07 4.2E-12 78.1 5.6 103 26-128 58-165 (169)
176 PRK04213 GTP-binding protein; 98.5 9.4E-07 2E-11 75.7 9.8 88 42-130 87-193 (201)
177 cd04108 Rab36_Rab34 Rab34/Rab3 98.5 1.2E-06 2.5E-11 73.4 10.2 105 26-130 53-166 (170)
178 cd04147 Ras_dva Ras-dva subfam 98.5 7.7E-07 1.7E-11 76.4 9.3 103 27-129 52-163 (198)
179 cd04106 Rab23_lke Rab23-like s 98.5 9.8E-07 2.1E-11 72.5 9.4 101 26-126 55-160 (162)
180 cd04122 Rab14 Rab14 subfamily. 98.5 8.3E-07 1.8E-11 73.6 9.0 103 26-128 55-163 (166)
181 PF00735 Septin: Septin; Inte 98.5 3.1E-07 6.7E-12 83.4 6.9 24 142-165 4-27 (281)
182 PRK12736 elongation factor Tu; 98.5 1.1E-06 2.3E-11 83.7 10.9 102 27-129 81-201 (394)
183 cd01867 Rab8_Rab10_Rab13_like 98.5 1.1E-06 2.4E-11 72.9 9.8 103 26-128 56-164 (167)
184 PF02421 FeoB_N: Ferrous iron 98.5 2.9E-08 6.2E-13 82.2 -0.0 80 43-124 76-156 (156)
185 cd04123 Rab21 Rab21 subfamily. 98.5 1.1E-06 2.4E-11 71.7 9.5 101 26-127 53-160 (162)
186 cd00877 Ran Ran (Ras-related n 98.5 5E-07 1.1E-11 75.3 7.5 103 26-130 53-160 (166)
187 PRK05433 GTP-binding protein L 98.5 9.3E-07 2E-11 88.3 10.6 101 29-130 82-185 (600)
188 cd04166 CysN_ATPS CysN_ATPS su 98.5 1.2E-07 2.7E-12 82.2 3.8 68 144-211 1-88 (208)
189 cd01861 Rab6 Rab6 subfamily. 98.5 5.8E-07 1.3E-11 73.7 7.6 101 26-126 53-159 (161)
190 cd04112 Rab26 Rab26 subfamily. 98.4 1.4E-06 3E-11 74.3 10.0 101 28-130 57-164 (191)
191 TIGR01393 lepA GTP-binding pro 98.4 9.2E-07 2E-11 88.2 10.0 99 29-130 78-181 (595)
192 cd01881 Obg_like The Obg-like 98.4 6.6E-07 1.4E-11 74.3 7.7 89 38-126 67-174 (176)
193 cd01866 Rab2 Rab2 subfamily. 98.4 5E-07 1.1E-11 75.2 6.8 59 142-210 4-63 (168)
194 cd01863 Rab18 Rab18 subfamily. 98.4 4.9E-07 1.1E-11 74.3 6.7 59 143-211 1-60 (161)
195 PRK12298 obgE GTPase CgtA; Rev 98.4 1.2E-06 2.6E-11 83.1 10.2 94 37-130 229-334 (390)
196 cd00880 Era_like Era (E. coli 98.4 4E-07 8.7E-12 73.3 5.9 60 147-217 1-62 (163)
197 cd04144 Ras2 Ras2 subfamily. 98.4 1E-06 2.2E-11 75.0 8.7 104 27-130 52-164 (190)
198 cd01860 Rab5_related Rab5-rela 98.4 5.8E-07 1.3E-11 73.9 6.8 58 143-210 2-60 (163)
199 PRK12297 obgE GTPase CgtA; Rev 98.4 1.4E-06 3E-11 83.4 10.3 91 37-130 228-328 (424)
200 PRK11058 GTPase HflX; Provisio 98.4 2.3E-06 5E-11 82.1 11.8 97 31-130 262-363 (426)
201 PRK03003 GTP-binding protein D 98.4 1.4E-06 3E-11 84.9 10.4 90 41-130 289-383 (472)
202 PRK00454 engB GTP-binding prot 98.4 1.7E-06 3.7E-11 73.5 9.8 87 43-129 104-194 (196)
203 PRK13768 GTPase; Provisional 98.4 7.6E-07 1.6E-11 79.7 7.8 93 37-129 118-247 (253)
204 cd01868 Rab11_like Rab11-like. 98.4 1.9E-06 4E-11 71.2 9.5 102 26-127 56-163 (165)
205 cd04118 Rab24 Rab24 subfamily. 98.4 1.6E-06 3.5E-11 73.7 9.3 105 26-130 54-167 (193)
206 cd04119 RJL RJL (RabJ-Like) su 98.4 6.7E-07 1.4E-11 73.6 6.7 22 143-164 1-22 (168)
207 cd04111 Rab39 Rab39 subfamily. 98.4 1.9E-06 4.1E-11 74.9 9.8 105 26-130 56-167 (211)
208 cd01866 Rab2 Rab2 subfamily. 98.4 1.4E-06 3.1E-11 72.5 8.6 103 26-128 57-165 (168)
209 cd00154 Rab Rab family. Rab G 98.4 1E-06 2.3E-11 71.2 7.6 96 29-125 57-158 (159)
210 KOG1491 Predicted GTP-binding 98.4 4.4E-07 9.6E-12 82.5 5.8 62 140-213 18-97 (391)
211 PF00025 Arf: ADP-ribosylation 98.4 2.3E-07 4.9E-12 78.3 3.7 102 26-127 62-174 (175)
212 cd04159 Arl10_like Arl10-like 98.4 1E-06 2.3E-11 71.3 7.5 98 28-126 51-158 (159)
213 cd04176 Rap2 Rap2 subgroup. T 98.4 7.6E-07 1.6E-11 73.4 6.8 101 27-127 54-161 (163)
214 PRK05291 trmE tRNA modificatio 98.4 1.2E-06 2.5E-11 84.8 9.0 87 36-130 285-371 (449)
215 cd04114 Rab30 Rab30 subfamily. 98.4 2.1E-06 4.5E-11 71.1 9.4 101 27-127 61-167 (169)
216 cd00154 Rab Rab family. Rab G 98.4 6.8E-07 1.5E-11 72.3 6.2 58 143-211 1-60 (159)
217 cd01868 Rab11_like Rab11-like. 98.4 8.2E-07 1.8E-11 73.3 6.8 60 143-212 4-64 (165)
218 PLN03118 Rab family protein; P 98.4 1.8E-06 4E-11 74.8 9.3 105 26-130 66-178 (211)
219 cd04110 Rab35 Rab35 subfamily. 98.4 1.9E-06 4E-11 74.1 9.2 102 28-130 62-168 (199)
220 CHL00071 tufA elongation facto 98.4 1.8E-06 3.8E-11 82.7 9.8 89 26-115 80-179 (409)
221 cd04162 Arl9_Arfrp2_like Arl9/ 98.4 4.9E-07 1.1E-11 75.2 5.3 100 26-125 48-162 (164)
222 cd04113 Rab4 Rab4 subfamily. 98.4 1.9E-06 4.1E-11 70.8 8.7 97 29-126 57-159 (161)
223 PLN03118 Rab family protein; P 98.4 7.9E-07 1.7E-11 77.1 6.7 61 141-212 13-74 (211)
224 TIGR00092 GTP-binding protein 98.4 5.1E-07 1.1E-11 84.4 5.5 60 143-213 3-80 (368)
225 COG4917 EutP Ethanolamine util 98.4 6E-06 1.3E-10 65.0 10.6 87 37-126 56-143 (148)
226 cd04155 Arl3 Arl3 subfamily. 98.4 9.2E-07 2E-11 73.6 6.6 58 140-211 12-69 (173)
227 cd01860 Rab5_related Rab5-rela 98.4 2E-06 4.2E-11 70.7 8.4 100 28-128 57-162 (163)
228 cd01864 Rab19 Rab19 subfamily. 98.4 1.2E-06 2.5E-11 72.6 7.0 22 142-163 3-24 (165)
229 cd01893 Miro1 Miro1 subfamily. 98.4 1.3E-06 2.8E-11 72.5 7.3 102 26-127 51-162 (166)
230 PLN03071 GTP-binding nuclear p 98.4 1.2E-06 2.6E-11 76.6 7.4 103 26-130 66-173 (219)
231 cd04161 Arl2l1_Arl13_like Arl2 98.4 1.4E-06 3.1E-11 72.6 7.5 99 27-125 48-165 (167)
232 cd04132 Rho4_like Rho4-like su 98.3 1.5E-06 3.4E-11 73.4 7.8 105 26-130 53-168 (187)
233 cd01864 Rab19 Rab19 subfamily. 98.3 2.8E-06 6.1E-11 70.2 9.2 98 28-126 59-163 (165)
234 KOG0075 GTP-binding ADP-ribosy 98.3 2.5E-06 5.3E-11 68.8 8.3 105 25-129 68-182 (186)
235 cd04126 Rab20 Rab20 subfamily. 98.3 1.6E-06 3.5E-11 76.0 7.8 105 26-130 48-191 (220)
236 smart00175 RAB Rab subfamily o 98.3 1.1E-06 2.3E-11 72.2 6.4 22 143-164 1-22 (164)
237 TIGR00437 feoB ferrous iron tr 98.3 8.2E-07 1.8E-11 88.6 6.4 53 149-213 1-54 (591)
238 cd04113 Rab4 Rab4 subfamily. 98.3 1.2E-06 2.5E-11 72.1 6.3 59 143-211 1-60 (161)
239 KOG2486 Predicted GTPase [Gene 98.3 9.5E-07 2.1E-11 78.5 6.0 65 140-215 134-198 (320)
240 PRK09518 bifunctional cytidyla 98.3 2.6E-06 5.7E-11 86.9 10.1 91 40-130 527-622 (712)
241 COG0532 InfB Translation initi 98.3 2.4E-06 5.2E-11 82.1 9.0 99 28-129 62-170 (509)
242 TIGR02836 spore_IV_A stage IV 98.3 9.9E-07 2.1E-11 82.9 6.2 76 140-215 15-106 (492)
243 cd01889 SelB_euk SelB subfamil 98.3 6.3E-07 1.4E-11 76.5 4.6 64 143-211 1-79 (192)
244 COG0218 Predicted GTPase [Gene 98.3 7E-06 1.5E-10 70.0 10.8 98 33-130 91-198 (200)
245 cd04166 CysN_ATPS CysN_ATPS su 98.3 1.8E-06 3.9E-11 74.9 7.4 91 28-119 84-184 (208)
246 TIGR00485 EF-Tu translation el 98.3 3.2E-06 6.8E-11 80.5 9.7 88 27-115 81-179 (394)
247 cd04140 ARHI_like ARHI subfami 98.3 1.4E-06 3E-11 72.3 6.3 100 27-126 54-162 (165)
248 COG2229 Predicted GTPase [Gene 98.3 5.6E-06 1.2E-10 69.3 9.8 98 28-126 75-175 (187)
249 cd04155 Arl3 Arl3 subfamily. 98.3 2.9E-06 6.2E-11 70.6 8.3 100 26-125 62-171 (173)
250 cd01867 Rab8_Rab10_Rab13_like 98.3 1.7E-06 3.8E-11 71.8 6.9 60 142-211 3-63 (167)
251 PLN03110 Rab GTPase; Provision 98.3 5.8E-06 1.3E-10 72.1 10.5 106 26-131 65-176 (216)
252 TIGR01394 TypA_BipA GTP-bindin 98.3 2E-06 4.3E-11 85.8 8.4 102 28-130 71-192 (594)
253 cd01862 Rab7 Rab7 subfamily. 98.3 1.7E-06 3.7E-11 71.7 6.7 22 143-164 1-22 (172)
254 TIGR02034 CysN sulfate adenyly 98.3 3.2E-06 6.9E-11 80.8 9.4 91 28-119 87-187 (406)
255 TIGR00487 IF-2 translation ini 98.3 2.3E-06 5E-11 85.2 8.7 98 28-126 142-247 (587)
256 cd00876 Ras Ras family. The R 98.3 4.1E-06 8.9E-11 68.2 8.8 98 28-126 54-158 (160)
257 PRK12735 elongation factor Tu; 98.3 4.2E-06 9.1E-11 79.7 10.1 103 26-129 80-203 (396)
258 KOG1487 GTP-binding protein DR 98.3 2.4E-07 5.1E-12 81.4 1.4 114 143-278 60-174 (358)
259 cd04125 RabA_like RabA-like su 98.3 6.6E-06 1.4E-10 69.8 10.1 103 27-130 54-163 (188)
260 cd04145 M_R_Ras_like M-Ras/R-R 98.3 1.8E-06 4E-11 70.9 6.5 23 142-164 2-24 (164)
261 cd04115 Rab33B_Rab33A Rab33B/R 98.3 7E-06 1.5E-10 68.4 10.1 102 26-127 55-167 (170)
262 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.3 2.1E-06 4.6E-11 71.0 6.8 21 143-163 3-23 (166)
263 PRK00049 elongation factor Tu; 98.3 5.1E-06 1.1E-10 79.1 10.3 103 26-129 80-203 (396)
264 KOG2655 Septin family protein 98.3 1.6E-06 3.5E-11 80.3 6.5 69 140-213 19-92 (366)
265 cd01865 Rab3 Rab3 subfamily. 98.3 2.2E-06 4.8E-11 71.0 6.7 21 143-163 2-22 (165)
266 CHL00189 infB translation init 98.3 3.8E-06 8.3E-11 85.2 9.6 100 28-128 302-409 (742)
267 cd01883 EF1_alpha Eukaryotic e 98.3 2.6E-06 5.6E-11 74.5 7.3 91 27-118 83-194 (219)
268 PRK12317 elongation factor 1-a 98.3 1.2E-06 2.6E-11 84.2 5.7 72 140-211 4-95 (425)
269 cd04154 Arl2 Arl2 subfamily. 98.3 2E-06 4.3E-11 71.9 6.2 58 140-211 12-69 (173)
270 TIGR03598 GTPase_YsxC ribosome 98.3 3.9E-06 8.5E-11 70.8 8.1 75 44-118 99-179 (179)
271 COG3276 SelB Selenocysteine-sp 98.3 9E-06 2E-10 76.5 11.0 114 15-129 40-162 (447)
272 cd00881 GTP_translation_factor 98.2 1.3E-06 2.9E-11 73.2 5.2 21 144-164 1-21 (189)
273 TIGR00491 aIF-2 translation in 98.2 6E-06 1.3E-10 82.1 10.4 102 27-129 74-216 (590)
274 cd00882 Ras_like_GTPase Ras-li 98.2 6.3E-06 1.4E-10 65.2 8.7 96 29-125 53-156 (157)
275 cd01871 Rac1_like Rac1-like su 98.2 2.5E-06 5.3E-11 71.8 6.5 101 26-126 53-172 (174)
276 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.2 6.5E-06 1.4E-10 72.8 9.4 105 25-129 64-188 (232)
277 COG5019 CDC3 Septin family pro 98.2 2.6E-06 5.7E-11 78.5 6.9 26 140-165 21-46 (373)
278 cd01875 RhoG RhoG subfamily. 98.2 3.6E-06 7.8E-11 71.9 7.4 104 26-129 55-177 (191)
279 COG2262 HflX GTPases [General 98.2 4.4E-06 9.5E-11 78.1 8.4 61 140-212 190-252 (411)
280 PLN03127 Elongation factor Tu; 98.2 5.3E-06 1.1E-10 80.2 9.3 103 26-129 129-252 (447)
281 cd04130 Wrch_1 Wrch-1 subfamil 98.2 1.8E-06 3.8E-11 72.2 5.3 99 27-125 53-170 (173)
282 cd04156 ARLTS1 ARLTS1 subfamil 98.2 2.5E-06 5.5E-11 69.9 6.0 55 144-211 1-55 (160)
283 cd04143 Rhes_like Rhes_like su 98.2 9E-06 2E-10 72.5 9.9 103 26-128 52-170 (247)
284 cd04138 H_N_K_Ras_like H-Ras/N 98.2 2.6E-06 5.7E-11 69.5 6.0 22 143-164 2-23 (162)
285 cd01884 EF_Tu EF-Tu subfamily. 98.2 3E-06 6.6E-11 72.9 6.6 66 142-211 2-76 (195)
286 cd04146 RERG_RasL11_like RERG/ 98.2 3.1E-06 6.7E-11 70.0 6.4 102 27-128 52-163 (165)
287 CHL00071 tufA elongation facto 98.2 3.2E-06 6.8E-11 80.9 7.3 71 139-210 9-85 (409)
288 cd04118 Rab24 Rab24 subfamily. 98.2 2.9E-06 6.2E-11 72.2 6.3 21 143-163 1-21 (193)
289 cd04116 Rab9 Rab9 subfamily. 98.2 3.6E-06 7.9E-11 69.8 6.8 23 141-163 4-26 (170)
290 cd04157 Arl6 Arl6 subfamily. 98.2 2.4E-06 5.2E-11 70.0 5.6 57 144-212 1-57 (162)
291 cd04159 Arl10_like Arl10-like 98.2 2.5E-06 5.5E-11 69.0 5.6 54 145-211 2-55 (159)
292 cd01876 YihA_EngB The YihA (En 98.2 1.3E-05 2.8E-10 65.4 9.9 86 42-127 78-169 (170)
293 cd04116 Rab9 Rab9 subfamily. 98.2 8.6E-06 1.9E-10 67.6 8.9 100 27-126 59-168 (170)
294 smart00174 RHO Rho (Ras homolo 98.2 2.8E-06 6E-11 70.8 5.9 103 26-128 50-171 (174)
295 cd04117 Rab15 Rab15 subfamily. 98.2 9.2E-06 2E-10 67.1 8.9 100 26-126 53-159 (161)
296 PRK05306 infB translation init 98.2 3.8E-06 8.3E-11 85.8 7.9 98 29-127 345-450 (787)
297 cd04142 RRP22 RRP22 subfamily. 98.2 1.4E-05 3.1E-10 68.8 10.3 90 39-128 74-173 (198)
298 cd04124 RabL2 RabL2 subfamily. 98.2 3.5E-06 7.7E-11 69.6 6.3 22 143-164 1-22 (161)
299 COG1217 TypA Predicted membran 98.2 4E-06 8.6E-11 79.2 7.2 120 10-130 47-196 (603)
300 cd04106 Rab23_lke Rab23-like s 98.2 4E-06 8.7E-11 68.8 6.5 22 143-164 1-22 (162)
301 cd04160 Arfrp1 Arfrp1 subfamil 98.2 2.8E-06 6E-11 70.2 5.5 21 144-164 1-21 (167)
302 TIGR00483 EF-1_alpha translati 98.2 5.7E-06 1.2E-10 79.6 8.4 90 29-119 93-197 (426)
303 KOG1145 Mitochondrial translat 98.2 9.3E-06 2E-10 78.1 9.6 98 28-128 208-315 (683)
304 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.2 4.4E-06 9.5E-11 70.1 6.7 57 141-211 14-70 (174)
305 PRK12317 elongation factor 1-a 98.2 4E-06 8.6E-11 80.6 7.3 91 28-119 91-195 (425)
306 cd04122 Rab14 Rab14 subfamily. 98.2 4.7E-06 1E-10 69.0 6.7 21 143-163 3-23 (166)
307 cd04123 Rab21 Rab21 subfamily. 98.2 4.7E-06 1E-10 68.0 6.6 21 144-164 2-22 (162)
308 cd00878 Arf_Arl Arf (ADP-ribos 98.2 2.9E-06 6.4E-11 69.5 5.4 55 144-212 1-55 (158)
309 cd01886 EF-G Elongation factor 98.2 3.2E-06 6.9E-11 76.4 6.0 69 144-212 1-76 (270)
310 cd04142 RRP22 RRP22 subfamily. 98.2 3.4E-06 7.4E-11 72.6 5.8 57 144-212 2-61 (198)
311 TIGR00450 mnmE_trmE_thdF tRNA 98.2 1.8E-05 3.9E-10 76.4 11.3 88 37-130 274-361 (442)
312 cd04115 Rab33B_Rab33A Rab33B/R 98.2 5.7E-06 1.2E-10 68.9 6.9 22 143-164 3-24 (170)
313 cd04177 RSR1 RSR1 subgroup. R 98.1 7.6E-06 1.6E-10 68.0 7.6 102 26-127 53-162 (168)
314 smart00178 SAR Sar1p-like memb 98.1 4.9E-06 1.1E-10 70.6 6.5 59 140-212 15-73 (184)
315 cd01874 Cdc42 Cdc42 subfamily. 98.1 4.5E-06 9.8E-11 70.2 6.3 101 26-126 53-172 (175)
316 cd04125 RabA_like RabA-like su 98.1 4.7E-06 1E-10 70.7 6.4 58 143-211 1-60 (188)
317 cd04133 Rop_like Rop subfamily 98.1 3.6E-06 7.8E-11 71.2 5.6 103 26-128 53-172 (176)
318 cd00157 Rho Rho (Ras homology) 98.1 2.6E-06 5.6E-11 70.5 4.7 100 26-125 52-169 (171)
319 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.1 6.1E-06 1.3E-10 70.1 7.0 101 26-126 57-177 (182)
320 cd01891 TypA_BipA TypA (tyrosi 98.1 3.3E-06 7.1E-11 72.2 5.3 69 144-212 4-77 (194)
321 COG0481 LepA Membrane GTPase L 98.1 3E-06 6.4E-11 80.3 5.4 116 10-130 50-187 (603)
322 PLN03108 Rab family protein; P 98.1 1.1E-05 2.4E-10 69.9 8.7 103 26-128 59-167 (210)
323 cd04140 ARHI_like ARHI subfami 98.1 4.7E-06 1E-10 69.0 6.0 22 143-164 2-23 (165)
324 cd04137 RheB Rheb (Ras Homolog 98.1 1.6E-05 3.6E-10 66.6 9.4 103 27-130 55-164 (180)
325 cd04149 Arf6 Arf6 subfamily. 98.1 5.5E-06 1.2E-10 69.2 6.5 58 141-212 8-65 (168)
326 cd04134 Rho3 Rho3 subfamily. 98.1 4E-06 8.6E-11 71.4 5.5 104 26-129 52-174 (189)
327 PRK05124 cysN sulfate adenylyl 98.1 5.7E-06 1.2E-10 80.6 7.2 90 28-120 114-216 (474)
328 PRK12735 elongation factor Tu; 98.1 4.8E-06 1E-10 79.3 6.5 71 136-210 6-85 (396)
329 cd04175 Rap1 Rap1 subgroup. T 98.1 5.3E-06 1.2E-10 68.4 6.0 21 143-163 2-22 (164)
330 cd00157 Rho Rho (Ras homology) 98.1 4.9E-06 1.1E-10 68.8 5.8 22 143-164 1-22 (171)
331 cd04101 RabL4 RabL4 (Rab-like4 98.1 8.4E-06 1.8E-10 67.1 7.2 21 143-163 1-21 (164)
332 cd04112 Rab26 Rab26 subfamily. 98.1 6E-06 1.3E-10 70.4 6.4 20 144-163 2-21 (191)
333 cd04110 Rab35 Rab35 subfamily. 98.1 6.4E-06 1.4E-10 70.8 6.6 23 141-163 5-27 (199)
334 KOG0078 GTP-binding protein SE 98.1 1.1E-05 2.4E-10 68.9 7.9 105 25-129 64-174 (207)
335 smart00173 RAS Ras subfamily o 98.1 4.5E-06 9.7E-11 68.7 5.4 21 144-164 2-22 (164)
336 KOG1489 Predicted GTP-binding 98.1 3.6E-06 7.8E-11 76.1 5.0 94 31-126 259-364 (366)
337 COG5257 GCD11 Translation init 98.1 1.1E-05 2.3E-10 73.2 7.9 104 26-130 91-203 (415)
338 PRK05506 bifunctional sulfate 98.1 1.1E-05 2.3E-10 81.5 8.9 91 28-119 111-211 (632)
339 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.1 8.4E-06 1.8E-10 69.0 7.0 22 142-163 3-24 (183)
340 cd04148 RGK RGK subfamily. Th 98.1 1.5E-05 3.2E-10 69.8 8.7 89 42-130 68-164 (221)
341 PRK14845 translation initiatio 98.1 1.3E-05 2.9E-10 83.9 9.7 101 28-129 533-673 (1049)
342 cd01873 RhoBTB RhoBTB subfamil 98.1 6.8E-06 1.5E-10 70.6 6.4 100 25-126 69-193 (195)
343 cd04177 RSR1 RSR1 subgroup. R 98.1 6.1E-06 1.3E-10 68.6 5.9 21 143-163 2-22 (168)
344 PRK10218 GTP-binding protein; 98.1 7.9E-06 1.7E-10 81.6 7.6 102 28-130 75-196 (607)
345 cd04139 RalA_RalB RalA/RalB su 98.1 6.1E-06 1.3E-10 67.6 5.8 20 144-163 2-21 (164)
346 cd04127 Rab27A Rab27a subfamil 98.1 8.7E-06 1.9E-10 68.2 6.8 22 142-163 4-25 (180)
347 cd00877 Ran Ran (Ras-related n 98.1 8.2E-06 1.8E-10 67.9 6.6 20 144-163 2-21 (166)
348 KOG0084 GTPase Rab1/YPT1, smal 98.1 2.3E-05 5E-10 66.3 9.1 105 25-130 61-173 (205)
349 PRK15467 ethanolamine utilizat 98.1 4.4E-06 9.5E-11 69.3 4.8 20 144-163 3-22 (158)
350 cd01890 LepA LepA subfamily. 98.1 5.1E-06 1.1E-10 69.5 5.2 21 144-164 2-22 (179)
351 TIGR00487 IF-2 translation ini 98.1 7.4E-06 1.6E-10 81.6 7.2 61 140-212 85-147 (587)
352 cd04114 Rab30 Rab30 subfamily. 98.1 1.1E-05 2.3E-10 66.8 7.0 22 142-163 7-28 (169)
353 TIGR00231 small_GTP small GTP- 98.1 1.1E-05 2.4E-10 64.7 7.0 83 42-125 70-160 (161)
354 PRK00049 elongation factor Tu; 98.1 7.8E-06 1.7E-10 77.9 7.0 71 136-210 6-85 (396)
355 cd04137 RheB Rheb (Ras Homolog 98.1 6.7E-06 1.5E-10 69.0 5.7 22 143-164 2-23 (180)
356 cd04107 Rab32_Rab38 Rab38/Rab3 98.1 1.1E-05 2.4E-10 69.2 7.2 21 143-163 1-21 (201)
357 KOG0094 GTPase Rab6/YPT6/Ryh1, 98.1 4.4E-05 9.4E-10 64.6 10.3 105 26-130 75-186 (221)
358 cd04136 Rap_like Rap-like subf 98.1 7.7E-06 1.7E-10 67.1 5.7 21 143-163 2-22 (163)
359 cd00876 Ras Ras family. The R 98.1 6.1E-06 1.3E-10 67.2 5.0 21 144-164 1-21 (160)
360 KOG0092 GTPase Rab5/YPT51 and 98.1 4.9E-06 1.1E-10 70.1 4.5 104 26-130 58-168 (200)
361 cd00879 Sar1 Sar1 subfamily. 98.1 1E-05 2.2E-10 68.5 6.6 57 140-210 17-73 (190)
362 PTZ00141 elongation factor 1- 98.0 1.6E-05 3.5E-10 76.8 8.7 92 27-119 91-203 (446)
363 PRK04004 translation initiatio 98.0 2.4E-05 5.2E-10 78.0 10.1 101 27-128 76-217 (586)
364 cd04131 Rnd Rnd subfamily. Th 98.0 1E-05 2.2E-10 68.4 6.4 101 26-126 53-173 (178)
365 PTZ00133 ADP-ribosylation fact 98.0 1.6E-05 3.5E-10 67.3 7.6 58 140-211 15-72 (182)
366 cd04135 Tc10 TC10 subfamily. 98.0 1.1E-05 2.4E-10 67.1 6.5 101 27-127 53-172 (174)
367 PLN03126 Elongation factor Tu; 98.0 2.1E-05 4.5E-10 76.6 9.3 89 26-115 149-248 (478)
368 cd01893 Miro1 Miro1 subfamily. 98.0 8.5E-06 1.8E-10 67.6 5.7 21 144-164 2-22 (166)
369 PLN03071 GTP-binding nuclear p 98.0 1.3E-05 2.8E-10 70.1 7.1 63 140-212 11-74 (219)
370 COG0536 Obg Predicted GTPase [ 98.0 9.9E-06 2.2E-10 74.0 6.4 90 42-131 234-335 (369)
371 KOG0072 GTP-binding ADP-ribosy 98.0 1.7E-05 3.6E-10 63.9 6.9 111 20-130 60-180 (182)
372 PLN03110 Rab GTPase; Provision 98.0 1.2E-05 2.6E-10 70.1 6.7 61 141-211 11-72 (216)
373 TIGR00437 feoB ferrous iron tr 98.0 2E-05 4.3E-10 78.8 9.1 83 43-127 70-153 (591)
374 cd04109 Rab28 Rab28 subfamily. 98.0 1.4E-05 3E-10 69.5 7.0 56 143-210 1-60 (215)
375 PRK12736 elongation factor Tu; 98.0 1.3E-05 2.9E-10 76.3 7.2 71 136-210 6-85 (394)
376 cd04111 Rab39 Rab39 subfamily. 98.0 1.5E-05 3.3E-10 69.2 6.9 22 143-164 3-24 (211)
377 cd04151 Arl1 Arl1 subfamily. 98.0 1E-05 2.3E-10 66.4 5.6 20 144-163 1-20 (158)
378 cd01870 RhoA_like RhoA-like su 98.0 1.4E-05 3E-10 66.6 6.3 102 26-127 53-173 (175)
379 cd04161 Arl2l1_Arl13_like Arl2 98.0 1.2E-05 2.5E-10 67.1 5.9 53 144-210 1-53 (167)
380 cd04132 Rho4_like Rho4-like su 98.0 1.3E-05 2.7E-10 67.8 6.1 22 143-164 1-22 (187)
381 PLN03127 Elongation factor Tu; 98.0 1.5E-05 3.3E-10 77.0 7.3 69 139-211 58-135 (447)
382 cd04108 Rab36_Rab34 Rab34/Rab3 98.0 1.7E-05 3.6E-10 66.4 6.5 21 144-164 2-22 (170)
383 TIGR02528 EutP ethanolamine ut 98.0 7.2E-06 1.6E-10 66.0 4.1 20 144-163 2-21 (142)
384 PTZ00369 Ras-like protein; Pro 98.0 1.4E-05 3.1E-10 67.9 6.2 23 141-163 4-26 (189)
385 cd04176 Rap2 Rap2 subgroup. T 98.0 1.5E-05 3.3E-10 65.5 6.1 21 143-163 2-22 (163)
386 KOG0076 GTP-binding ADP-ribosy 98.0 7.2E-06 1.6E-10 68.0 3.9 106 25-130 72-188 (197)
387 cd04135 Tc10 TC10 subfamily. 98.0 1.7E-05 3.6E-10 66.0 6.3 22 143-164 1-22 (174)
388 PLN03108 Rab family protein; P 98.0 1.7E-05 3.8E-10 68.7 6.6 61 141-211 5-66 (210)
389 cd04117 Rab15 Rab15 subfamily. 98.0 1.8E-05 4E-10 65.3 6.4 20 144-163 2-21 (161)
390 PRK09554 feoB ferrous iron tra 98.0 4.1E-05 8.8E-10 78.6 10.1 84 43-128 83-167 (772)
391 smart00177 ARF ARF-like small 98.0 2E-05 4.4E-10 66.1 6.7 58 141-212 12-69 (175)
392 cd04158 ARD1 ARD1 subfamily. 97.9 1.8E-05 3.9E-10 65.9 5.9 20 144-163 1-20 (169)
393 PLN00043 elongation factor 1-a 97.9 3.2E-05 7E-10 74.8 8.4 92 26-118 90-202 (447)
394 cd04146 RERG_RasL11_like RERG/ 97.9 1.1E-05 2.4E-10 66.6 4.4 20 144-163 1-20 (165)
395 PRK05506 bifunctional sulfate 97.9 1.3E-05 2.8E-10 80.9 5.7 25 140-164 22-46 (632)
396 cd04150 Arf1_5_like Arf1-Arf5- 97.9 2.3E-05 5E-10 64.7 6.1 55 143-211 1-55 (159)
397 cd04144 Ras2 Ras2 subfamily. 97.9 1.5E-05 3.2E-10 67.9 5.1 20 144-163 1-20 (190)
398 cd04148 RGK RGK subfamily. Th 97.9 2.3E-05 4.9E-10 68.7 6.2 20 144-163 2-21 (221)
399 CHL00189 infB translation init 97.9 1.4E-05 3.1E-10 81.1 5.5 60 140-211 242-306 (742)
400 smart00174 RHO Rho (Ras homolo 97.9 2E-05 4.3E-10 65.5 5.5 20 145-164 1-20 (174)
401 PRK05306 infB translation init 97.9 2E-05 4.3E-10 80.7 6.5 61 140-212 288-349 (787)
402 PF10662 PduV-EutP: Ethanolami 97.9 1.5E-05 3.2E-10 64.8 4.5 21 144-164 3-23 (143)
403 cd04168 TetM_like Tet(M)-like 97.9 3.2E-05 7E-10 68.5 7.1 59 29-88 72-130 (237)
404 KOG0093 GTPase Rab3, small G p 97.9 3.2E-05 7E-10 62.5 6.2 105 25-130 73-184 (193)
405 KOG1423 Ras-like GTPase ERA [C 97.9 3.2E-05 6.8E-10 69.8 6.5 95 35-129 145-271 (379)
406 cd04168 TetM_like Tet(M)-like 97.9 3E-05 6.4E-10 68.8 6.4 21 144-164 1-21 (237)
407 TIGR00491 aIF-2 translation in 97.9 2.3E-05 5.1E-10 78.0 6.3 22 143-164 5-26 (590)
408 cd04170 EF-G_bact Elongation f 97.9 2.1E-05 4.5E-10 70.9 5.4 21 144-164 1-21 (268)
409 PF08477 Miro: Miro-like prote 97.9 3.1E-05 6.7E-10 60.3 5.6 21 144-164 1-21 (119)
410 cd04129 Rho2 Rho2 subfamily. 97.9 2.7E-05 5.8E-10 66.1 5.6 90 41-130 68-174 (187)
411 TIGR00485 EF-Tu translation el 97.8 3.8E-05 8.3E-10 73.1 7.1 69 139-211 9-86 (394)
412 KOG0461 Selenocysteine-specifi 97.8 0.00016 3.4E-09 66.3 10.4 103 27-130 76-194 (522)
413 cd01870 RhoA_like RhoA-like su 97.8 3.3E-05 7.1E-10 64.3 5.8 21 144-164 3-23 (175)
414 KOG0073 GTP-binding ADP-ribosy 97.8 8.1E-05 1.8E-09 61.3 7.7 106 25-130 63-179 (185)
415 cd04105 SR_beta Signal recogni 97.8 4.4E-05 9.5E-10 66.0 6.7 56 144-212 2-60 (203)
416 PLN00223 ADP-ribosylation fact 97.8 5E-05 1.1E-09 64.3 6.7 56 141-210 16-71 (181)
417 COG2895 CysN GTPases - Sulfate 97.8 4.4E-05 9.5E-10 70.1 6.4 89 26-117 91-191 (431)
418 KOG0410 Predicted GTP binding 97.8 3.8E-05 8.3E-10 69.8 5.9 61 140-212 176-238 (410)
419 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.8 8E-05 1.7E-09 65.4 7.9 102 26-127 53-174 (222)
420 PTZ00132 GTP-binding nuclear p 97.8 0.00014 3E-09 63.1 9.4 121 26-159 62-192 (215)
421 cd01882 BMS1 Bms1. Bms1 is an 97.8 4.9E-05 1.1E-09 66.8 6.5 57 140-210 37-93 (225)
422 KOG0070 GTP-binding ADP-ribosy 97.8 3.8E-05 8.2E-10 64.3 5.3 106 25-130 64-179 (181)
423 TIGR00484 EF-G translation elo 97.8 3.7E-05 8E-10 78.3 6.3 71 142-213 10-88 (689)
424 cd04126 Rab20 Rab20 subfamily. 97.8 4.4E-05 9.5E-10 66.9 5.9 21 143-163 1-21 (220)
425 cd01892 Miro2 Miro2 subfamily. 97.8 7.4E-05 1.6E-09 62.4 7.0 24 140-163 2-25 (169)
426 cd01874 Cdc42 Cdc42 subfamily. 97.8 6.3E-05 1.4E-09 63.2 6.6 21 143-163 2-22 (175)
427 cd04130 Wrch_1 Wrch-1 subfamil 97.8 6.4E-05 1.4E-09 62.7 6.6 22 143-164 1-22 (173)
428 cd01886 EF-G Elongation factor 97.8 4.9E-05 1.1E-09 68.7 6.3 83 29-112 72-158 (270)
429 cd04103 Centaurin_gamma Centau 97.8 6E-05 1.3E-09 62.3 6.3 86 41-126 61-156 (158)
430 cd01883 EF1_alpha Eukaryotic e 97.8 3.9E-05 8.5E-10 67.0 5.3 68 144-211 1-88 (219)
431 cd04162 Arl9_Arfrp2_like Arl9/ 97.8 5E-05 1.1E-09 63.0 5.7 20 145-164 2-21 (164)
432 cd00882 Ras_like_GTPase Ras-li 97.8 2.1E-05 4.6E-10 62.2 3.3 18 147-164 1-18 (157)
433 cd04169 RF3 RF3 subfamily. Pe 97.7 6.1E-05 1.3E-09 68.0 6.5 21 144-164 4-24 (267)
434 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.7 6.2E-05 1.3E-09 63.0 6.1 21 143-163 3-23 (172)
435 cd04147 Ras_dva Ras-dva subfam 97.7 4.5E-05 9.8E-10 65.3 5.1 21 144-164 1-21 (198)
436 PF00009 GTP_EFTU: Elongation 97.7 1.9E-05 4.2E-10 67.1 2.7 70 142-211 3-81 (188)
437 PF00071 Ras: Ras family; Int 97.7 8.7E-05 1.9E-09 60.8 6.4 21 144-164 1-21 (162)
438 PRK00007 elongation factor G; 97.7 5.3E-05 1.2E-09 77.2 6.1 71 142-212 10-87 (693)
439 PRK12739 elongation factor G; 97.7 0.00011 2.3E-09 75.0 8.1 62 27-89 79-140 (691)
440 PTZ00132 GTP-binding nuclear p 97.7 0.00012 2.6E-09 63.5 7.2 24 140-163 7-30 (215)
441 cd04134 Rho3 Rho3 subfamily. 97.7 8.2E-05 1.8E-09 63.3 5.9 20 144-163 2-21 (189)
442 TIGR00475 selB selenocysteine- 97.7 7E-05 1.5E-09 74.8 6.1 58 144-210 2-60 (581)
443 cd01871 Rac1_like Rac1-like su 97.7 9.6E-05 2.1E-09 62.1 6.1 21 143-163 2-22 (174)
444 cd04121 Rab40 Rab40 subfamily. 97.7 0.00012 2.7E-09 62.5 6.8 23 141-163 5-27 (189)
445 COG1100 GTPase SAR1 and relate 97.7 9.5E-05 2.1E-09 63.9 6.0 22 143-164 6-27 (219)
446 TIGR00483 EF-1_alpha translati 97.6 9.7E-05 2.1E-09 71.1 6.5 71 140-210 5-95 (426)
447 PLN03126 Elongation factor Tu; 97.6 0.00011 2.4E-09 71.5 6.7 71 140-210 79-154 (478)
448 PRK12739 elongation factor G; 97.6 7.5E-05 1.6E-09 76.1 5.7 72 141-212 7-85 (691)
449 cd04167 Snu114p Snu114p subfam 97.6 9E-05 2E-09 64.3 5.4 58 29-87 79-136 (213)
450 cd04128 Spg1 Spg1p. Spg1p (se 97.6 0.00015 3.3E-09 61.4 6.7 22 143-164 1-22 (182)
451 cd04131 Rnd Rnd subfamily. Th 97.6 0.00016 3.4E-09 61.1 6.7 22 143-164 2-23 (178)
452 cd04120 Rab12 Rab12 subfamily. 97.6 0.00014 3E-09 62.9 6.5 20 144-163 2-21 (202)
453 KOG1144 Translation initiation 97.6 0.00019 4.2E-09 71.4 8.1 110 20-130 537-688 (1064)
454 PRK00741 prfC peptide chain re 97.6 0.00023 4.9E-09 70.2 8.7 59 29-88 87-145 (526)
455 PF00071 Ras: Ras family; Int 97.6 0.00012 2.6E-09 59.9 5.8 94 34-128 60-160 (162)
456 PRK04004 translation initiatio 97.6 0.00013 2.9E-09 72.8 7.0 24 141-164 5-28 (586)
457 cd01882 BMS1 Bms1. Bms1 is an 97.6 0.00019 4.2E-09 63.0 7.3 85 27-115 89-182 (225)
458 KOG0098 GTPase Rab2, small G p 97.6 0.00012 2.5E-09 61.6 5.4 104 25-129 58-168 (216)
459 PRK09866 hypothetical protein; 97.6 0.0002 4.3E-09 71.1 7.9 24 141-164 68-91 (741)
460 PRK05124 cysN sulfate adenylyl 97.6 0.00015 3.2E-09 70.7 6.9 25 140-164 25-49 (474)
461 smart00053 DYNc Dynamin, GTPas 97.6 0.00037 8E-09 61.8 8.8 78 121-210 4-135 (240)
462 COG0370 FeoB Fe2+ transport sy 97.6 5.6E-05 1.2E-09 74.9 3.9 109 18-129 53-164 (653)
463 cd04102 RabL3 RabL3 (Rab-like3 97.6 0.00017 3.7E-09 62.3 6.3 21 143-163 1-21 (202)
464 cd01896 DRG The developmentall 97.6 0.0005 1.1E-08 60.8 9.4 49 75-128 177-225 (233)
465 cd01885 EF2 EF2 (for archaea a 97.5 0.00013 2.8E-09 64.1 5.4 58 29-87 81-138 (222)
466 PRK10512 selenocysteinyl-tRNA- 97.5 0.00015 3.2E-09 72.8 6.5 58 144-210 2-61 (614)
467 cd04143 Rhes_like Rhes_like su 97.5 0.00013 2.9E-09 65.0 5.6 20 144-163 2-21 (247)
468 KOG0071 GTP-binding ADP-ribosy 97.5 0.0002 4.4E-09 57.5 5.9 104 25-128 64-177 (180)
469 TIGR02034 CysN sulfate adenyly 97.5 0.00013 2.8E-09 69.8 5.5 68 143-210 1-90 (406)
470 TIGR00503 prfC peptide chain r 97.5 0.00044 9.5E-09 68.3 8.9 60 27-87 86-145 (527)
471 cd04129 Rho2 Rho2 subfamily. 97.5 0.00022 4.8E-09 60.4 6.0 21 143-163 2-22 (187)
472 cd04167 Snu114p Snu114p subfam 97.5 0.00011 2.5E-09 63.7 3.9 21 144-164 2-22 (213)
473 PRK12740 elongation factor G; 97.5 0.00024 5.1E-09 72.3 6.8 60 28-88 67-126 (668)
474 COG5256 TEF1 Translation elong 97.4 0.00043 9.2E-09 65.0 7.5 91 26-119 90-201 (428)
475 PF09439 SRPRB: Signal recogni 97.4 0.00011 2.3E-09 62.4 3.1 58 144-213 5-62 (181)
476 KOG1249 Predicted GTPases [Gen 97.4 0.00013 2.7E-09 70.3 3.8 140 74-231 243-396 (572)
477 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 97.4 0.00035 7.5E-09 59.3 6.2 24 141-164 4-27 (182)
478 cd04133 Rop_like Rop subfamily 97.4 0.00034 7.3E-09 59.1 5.9 21 143-163 2-22 (176)
479 KOG3859 Septins (P-loop GTPase 97.4 0.00053 1.2E-08 61.2 7.2 66 140-213 40-108 (406)
480 cd04169 RF3 RF3 subfamily. Pe 97.4 0.0005 1.1E-08 62.1 6.9 61 28-89 78-138 (267)
481 KOG0080 GTPase Rab18, small G 97.3 0.00057 1.2E-08 56.2 6.3 56 143-209 12-69 (209)
482 cd01875 RhoG RhoG subfamily. 97.3 0.00043 9.3E-09 59.0 6.0 22 142-163 3-24 (191)
483 PRK13351 elongation factor G; 97.3 0.00071 1.5E-08 69.0 8.5 60 29-89 81-140 (687)
484 PF00025 Arf: ADP-ribosylation 97.3 0.00047 1E-08 58.0 6.0 57 140-210 12-68 (175)
485 cd04104 p47_IIGP_like p47 (47- 97.3 0.002 4.4E-08 55.2 10.0 86 43-130 78-185 (197)
486 PF00350 Dynamin_N: Dynamin fa 97.3 0.0002 4.3E-09 59.3 3.5 20 145-164 1-20 (168)
487 PRK00007 elongation factor G; 97.3 0.00043 9.3E-09 70.6 6.7 61 29-90 83-143 (693)
488 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.3 0.00048 1E-08 60.5 6.1 22 143-164 2-23 (222)
489 cd01885 EF2 EF2 (for archaea a 97.3 0.00054 1.2E-08 60.1 6.1 21 144-164 2-22 (222)
490 TIGR00073 hypB hydrogenase acc 97.3 0.0012 2.5E-08 57.2 8.1 54 74-127 148-205 (207)
491 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.3 0.00055 1.2E-08 60.5 6.1 23 141-163 12-34 (232)
492 cd01888 eIF2_gamma eIF2-gamma 97.2 0.0005 1.1E-08 59.3 5.1 23 143-165 1-23 (203)
493 KOG1532 GTPase XAB1, interacts 97.2 0.0014 3.1E-08 58.5 8.0 84 47-130 149-265 (366)
494 PTZ00141 elongation factor 1- 97.2 0.00079 1.7E-08 65.2 6.8 71 140-210 5-95 (446)
495 cd04102 RabL3 RabL3 (Rab-like3 97.2 0.0018 4E-08 55.9 8.4 103 26-128 58-196 (202)
496 TIGR01393 lepA GTP-binding pro 97.2 0.0006 1.3E-08 68.3 6.0 66 144-213 5-83 (595)
497 PLN00023 GTP-binding protein; 97.2 0.00096 2.1E-08 61.6 6.8 24 141-164 20-43 (334)
498 cd04170 EF-G_bact Elongation f 97.2 0.0015 3.3E-08 58.7 8.1 60 29-89 72-131 (268)
499 TIGR00484 EF-G translation elo 97.2 0.00059 1.3E-08 69.6 5.9 61 28-89 82-142 (689)
500 KOG1191 Mitochondrial GTPase [ 97.2 0.0011 2.3E-08 63.6 7.1 126 5-130 282-451 (531)
No 1
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=100.00 E-value=1.8e-43 Score=313.00 Aligned_cols=249 Identities=39% Similarity=0.618 Sum_probs=203.2
Q ss_pred hHHHHHhhhcceecccCC---CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEec
Q 022351 7 SLFKLAREIGTAVSQKKG---GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNK 83 (298)
Q Consensus 7 ~~~~~~~~~g~~~~~~~~---~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK 83 (298)
-+|.+|+++|.+.+-..+ .+||||||+++++++++.++.+|+||+|.|||.|++++++.+.+++. .++.|||+||
T Consensus 5 ~~~s~~~~~~~~~~~~~~~~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~--~k~riiVlNK 82 (335)
T KOG2485|consen 5 KTWSIAREAGDAVIFAKYNMPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLP--PKPRIIVLNK 82 (335)
T ss_pred HHHHHHHHhhhcccccccCCccccCchHHHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcC--CCceEEEEec
Confidence 579999999887765554 79999999999999999999999999999999999999999998854 8999999999
Q ss_pred CCCCChhhHHHHHHHHHccCC-CEEEEecCCCc--CHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHH
Q 022351 84 MDLASPTQFKEWITFFDQQNC-PSFGVNSHNKD--NVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALAN 160 (298)
Q Consensus 84 ~DL~~~~~~~~~~~~~~~~~~-~vi~iSa~~~~--gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN 160 (298)
+||+++.+....+++++..+. .++..+|.... ++..++..+.....++.+. ........+++|+|.||||||||||
T Consensus 83 ~DLad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~-irt~~~~~~vmVvGvPNVGKSsLIN 161 (335)
T KOG2485|consen 83 MDLADPKEQKKIIQYLEWQNLESYIKLDCNKDCNKQVSPLLKILTILSEELVRF-IRTLNSEYNVMVVGVPNVGKSSLIN 161 (335)
T ss_pred ccccCchhhhHHHHHHHhhcccchhhhhhhhhhhhccccHHHHHHHHHHHHHHh-hcccCCceeEEEEcCCCCChHHHHH
Confidence 999997777788888864443 34444444333 3555555444333332110 0113467899999999999999999
Q ss_pred HHhhhcchhhhhcCCccceeecCCCCeeeeeEE-EEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCCChHH
Q 022351 161 SLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKE 239 (298)
Q Consensus 161 ~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~~~~~ 239 (298)
++..... .+.+.++++..||+|+.+.. +++...+.+|++||||++.|...+.|.+++||++|+++++++.+..
T Consensus 162 a~r~~~L------rk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~~lKLAL~g~Vkd~~V~~~~ 235 (335)
T KOG2485|consen 162 ALRNVHL------RKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVEDGLKLALCGLVKDHLVGEET 235 (335)
T ss_pred HHHHHHh------hhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHHHhhhhhhcccccccccCHHH
Confidence 9974211 23588999999999999986 8888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCchhHHHhhcccC
Q 022351 240 LAQYFLGILNFSDEYKKWAKFSINQ 264 (298)
Q Consensus 240 ~~~~~l~~l~~~~~~~~~~~~~~~~ 264 (298)
+|||+|+++|....+.++..+..-.
T Consensus 236 ~adylL~~lN~~~~~~y~~~l~~~~ 260 (335)
T KOG2485|consen 236 IADYLLYLLNSHSDFSYVKDLKPGS 260 (335)
T ss_pred HHHHHHHHHhccCcchhHHHhccCC
Confidence 9999999999998887776665544
No 2
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=100.00 E-value=1.4e-41 Score=309.12 Aligned_cols=234 Identities=35% Similarity=0.525 Sum_probs=196.2
Q ss_pred CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC
Q 022351 25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC 104 (298)
Q Consensus 25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~ 104 (298)
++||||||+++++++++.++.+|+||+|+|++.|.++.++.+..++. ++|+++|+||+||.+....+.|.++++..+.
T Consensus 4 ~~wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~ 81 (287)
T PRK09563 4 IQWFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADPEVTKKWIEYFEEQGI 81 (287)
T ss_pred CcCcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCHHHHHHHHHHHHHcCC
Confidence 79999999999999999999999999999999999988887777643 7999999999999877667789888865567
Q ss_pred CEEEEecCCCcCHHHHHHHHHHHHHhhhhcc--CCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeec
Q 022351 105 PSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD--YDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVS 182 (298)
Q Consensus 105 ~vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~--~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~ 182 (298)
+++++|+.++.|+++|++.+.+.+++..... .......++++++|.||||||||||+|.+ .+.+.++
T Consensus 82 ~vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~-----------~~~~~~~ 150 (287)
T PRK09563 82 KALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAG-----------KKIAKTG 150 (287)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhc-----------CCccccC
Confidence 7899999999999999999988876532110 01124568999999999999999999983 5667899
Q ss_pred CCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCCChHHHHHHHHHHHccCCchhHHHhhcc
Q 022351 183 PQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262 (298)
Q Consensus 183 ~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 262 (298)
+.||+|++.+.+.+. .+++|+||||+..|...+.+.+.++|++|+|+++.++...+++|++++++..........+..
T Consensus 151 ~~~g~T~~~~~~~~~--~~~~l~DtPGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~l~~~y~~ 228 (287)
T PRK09563 151 NRPGVTKAQQWIKLG--KGLELLDTPGILWPKLEDQEVGLKLALTGAIKDEALDLEEVAIFALEYLSKHYPERLKERYKL 228 (287)
T ss_pred CCCCeEEEEEEEEeC--CcEEEEECCCcCCCCCCcHHHHHHHHHhCCcchhhcChHHHHHHHHHHHHhhCHHHHHHHhCC
Confidence 999999999877664 359999999999999999999999999999999999999999999999998776555555554
Q ss_pred c--CCCccccccc
Q 022351 263 N--QINKPLTLHH 273 (298)
Q Consensus 263 ~--~~~~~~~~~~ 273 (298)
+ ..++.++|+.
T Consensus 229 ~~~~~~~~~~l~~ 241 (287)
T PRK09563 229 DELPEDILELLEA 241 (287)
T ss_pred CCCCCCHHHHHHH
Confidence 3 2355566653
No 3
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=100.00 E-value=2.6e-41 Score=305.73 Aligned_cols=234 Identities=33% Similarity=0.524 Sum_probs=195.5
Q ss_pred CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC
Q 022351 25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC 104 (298)
Q Consensus 25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~ 104 (298)
++||||||+++++++.+.++.+|+|++|+|++.|.++.++.+.+++ .++|+++|+||+||.+.+....|.++++..+.
T Consensus 1 ~~WfpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~ 78 (276)
T TIGR03596 1 IQWFPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLADPAVTKQWLKYFEEKGI 78 (276)
T ss_pred CccChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccCCHHHHHHHHHHHHHcCC
Confidence 5899999999999999999999999999999999998888877765 37899999999999877667788888865566
Q ss_pred CEEEEecCCCcCHHHHHHHHHHHHHhhhhc--cCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeec
Q 022351 105 PSFGVNSHNKDNVKEFLKFLQAHVRNLRKS--DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVS 182 (298)
Q Consensus 105 ~vi~iSa~~~~gi~~L~~~l~~~i~~~~~~--~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~ 182 (298)
+++++||.++.|+++|++.+.+.+++.... ........++++++|.||||||||||+|. +.+.+.++
T Consensus 79 ~vi~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~-----------~~~~~~~~ 147 (276)
T TIGR03596 79 KALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLA-----------GKKVAKVG 147 (276)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHh-----------CCCccccC
Confidence 789999999999999999998877653210 00112356899999999999999999998 35668889
Q ss_pred CCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCCChHHHHHHHHHHHccCCchhHHHhhcc
Q 022351 183 PQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262 (298)
Q Consensus 183 ~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 262 (298)
+.||+|+..+.+.+. .+++|+||||+..|.+.+.+.+.++|++|+|+++.++..+.++|++++++..........+..
T Consensus 148 ~~~g~T~~~~~~~~~--~~~~l~DtPG~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~~~~~~~l~~~~~~~l~~~y~i 225 (276)
T TIGR03596 148 NRPGVTKGQQWIKLS--DGLELLDTPGILWPKFEDQEVGLKLAATGAIKDEALDLEDVALFLLEYLLEHYPERLKERYKL 225 (276)
T ss_pred CCCCeecceEEEEeC--CCEEEEECCCcccCCCCchHHHHHHHHhCCcccccCChHHHHHHHHHHHHhhCHHHHHHHhCc
Confidence 999999999887764 359999999999999999999999999999999999999999999999998876554455554
Q ss_pred cC--CCccccccc
Q 022351 263 NQ--INKPLTLHH 273 (298)
Q Consensus 263 ~~--~~~~~~~~~ 273 (298)
+. .++.++|+.
T Consensus 226 ~~~~~~~~~~l~~ 238 (276)
T TIGR03596 226 DELPEDIVELLEA 238 (276)
T ss_pred CCCCCCHHHHHHH
Confidence 42 355566663
No 4
>COG1161 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=2.3e-35 Score=271.64 Aligned_cols=209 Identities=35% Similarity=0.545 Sum_probs=178.8
Q ss_pred CCCccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHcc
Q 022351 23 KGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQ 102 (298)
Q Consensus 23 ~~~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~ 102 (298)
..++||||||.++++++.+.++.+|+|++|+||++|.++.++.+.++. .+++.++|+||+||++....++|.+++...
T Consensus 12 ~~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v--~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~ 89 (322)
T COG1161 12 NKIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIV--KEKPKLLVLNKADLAPKEVTKKWKKYFKKE 89 (322)
T ss_pred ccccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHH--ccCCcEEEEehhhcCCHHHHHHHHHHHHhc
Confidence 357999999999999999999999999999999999999999998884 467779999999999999999999999765
Q ss_pred -CCCEEEEecCCCcCHHHHHHHHHH----HHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCcc
Q 022351 103 -NCPSFGVNSHNKDNVKEFLKFLQA----HVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLR 177 (298)
Q Consensus 103 -~~~vi~iSa~~~~gi~~L~~~l~~----~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~ 177 (298)
+...+.+++..+.+...+...+.. .+..+.+. .......++++||.||||||||||+|+ +.+
T Consensus 90 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~--~~~~~~~~v~vvG~PNVGKSslIN~L~-----------~k~ 156 (322)
T COG1161 90 EGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKK--GLLKRKIRVGVVGYPNVGKSTLINRLL-----------GKK 156 (322)
T ss_pred CCCccEEEEeecccCccchHHHHHHHHHHHHHHHhhc--CCCccceEEEEEcCCCCcHHHHHHHHh-----------ccc
Confidence 567889999988887777754432 22222211 112345899999999999999999999 356
Q ss_pred ceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCCC-hhhhhhhhhhcccccCCCChHHHHHHHHHHH
Q 022351 178 HATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHD-VEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248 (298)
Q Consensus 178 ~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~~-~~~~~~la~~~~i~~~~~~~~~~~~~~l~~l 248 (298)
.+++|+.||+|++.+.+++..+ ++|+||||+..|...+ ...+.+++..++|++.......++.+++..+
T Consensus 157 ~~~~s~~PG~Tk~~q~i~~~~~--i~LlDtPGii~~~~~~~~~v~~~l~~~~~Ik~~~~~~~~v~~~~~~~~ 226 (322)
T COG1161 157 VAKTSNRPGTTKGIQWIKLDDG--IYLLDTPGIIPPKFDDDELVLLKLAPKGEIKDPVLPADEVAERLLGGL 226 (322)
T ss_pred ceeeCCCCceecceEEEEcCCC--eEEecCCCcCCCCccchHHHhhccccccccCccccChHHHHHHHHhhh
Confidence 7999999999999999988654 9999999999999988 8889999999999999999999988888766
No 5
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=100.00 E-value=6.6e-32 Score=227.65 Aligned_cols=170 Identities=42% Similarity=0.693 Sum_probs=137.9
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCE
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPS 106 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~v 106 (298)
||||||+++++++++.++++|+|++|+|++.|....+..+...+ .++|+++|+||+|+.+.+....|.++++..+..+
T Consensus 1 ~~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~v 78 (171)
T cd01856 1 WFPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADPKKTKKWLKYFESKGEKV 78 (171)
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeE
Confidence 99999999999999999999999999999988777666555543 4689999999999987666667777776555678
Q ss_pred EEEecCCCcCHHHHHHHHHHHHHhhhhc-cCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCC
Q 022351 107 FGVNSHNKDNVKEFLKFLQAHVRNLRKS-DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQP 185 (298)
Q Consensus 107 i~iSa~~~~gi~~L~~~l~~~i~~~~~~-~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~p 185 (298)
+.+||+++.|+++|.+.+.+.++...+. ........++++++|.||||||||+|+|.+ .....+++.|
T Consensus 79 i~iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~-----------~~~~~~~~~~ 147 (171)
T cd01856 79 LFVNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRG-----------KKVAKVGNKP 147 (171)
T ss_pred EEEECCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhC-----------CCceeecCCC
Confidence 9999999999999999998876421110 001224457999999999999999999993 3456889999
Q ss_pred CeeeeeEEEEEccCCCEEEEeCCCCC
Q 022351 186 GETKDIYSLKIASHPNIYVLDTPGIL 211 (298)
Q Consensus 186 g~T~~~~~~~~~~~~~~~liDTPGi~ 211 (298)
|+|+..+.+.+. ..++++||||+.
T Consensus 148 ~~T~~~~~~~~~--~~~~~iDtpG~~ 171 (171)
T cd01856 148 GVTKGIQWIKIS--PGIYLLDTPGIL 171 (171)
T ss_pred CEEeeeEEEEec--CCEEEEECCCCC
Confidence 999999887664 469999999984
No 6
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.97 E-value=1.3e-29 Score=210.57 Aligned_cols=153 Identities=25% Similarity=0.455 Sum_probs=124.4
Q ss_pred HHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCC--CCCcEEEEEecCCCCChhhHHHHHHHHHccC-CCEEEEecCCCc
Q 022351 39 IADRMPLVDIILEVRDARIPFSSEFDQLRNHHPF--SSSRRILVLNKMDLASPTQFKEWITFFDQQN-CPSFGVNSHNKD 115 (298)
Q Consensus 39 i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~--~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~-~~vi~iSa~~~~ 115 (298)
+++.++.+|+|++|+|++.|+...+..+.+++.. .++|+++|+||+|+.+++....|...+.+.. ..++++||+.+.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccc
Confidence 5678999999999999999987777777665432 3589999999999998877778888885432 235789999999
Q ss_pred CHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEE
Q 022351 116 NVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLK 195 (298)
Q Consensus 116 gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~ 195 (298)
|+++|++.+.+..... ......+++++|.||||||||||+|+ +.+.+.+++.||+|++.+.+.
T Consensus 82 ~~~~L~~~l~~~~~~~------~~~~~~~v~~~G~~nvGKStliN~l~-----------~~~~~~~~~~~g~T~~~~~~~ 144 (157)
T cd01858 82 GKGSLIQLLRQFSKLH------SDKKQISVGFIGYPNVGKSSIINTLR-----------SKKVCKVAPIPGETKVWQYIT 144 (157)
T ss_pred cHHHHHHHHHHHHhhh------ccccceEEEEEeCCCCChHHHHHHHh-----------cCCceeeCCCCCeeEeEEEEE
Confidence 9999999998765421 11346789999999999999999998 357789999999999988776
Q ss_pred EccCCCEEEEeCCCC
Q 022351 196 IASHPNIYVLDTPGI 210 (298)
Q Consensus 196 ~~~~~~~~liDTPGi 210 (298)
.. .+++|+||||+
T Consensus 145 ~~--~~~~liDtPGi 157 (157)
T cd01858 145 LM--KRIYLIDCPGV 157 (157)
T ss_pred cC--CCEEEEECcCC
Confidence 53 35999999997
No 7
>KOG2484 consensus GTPase [General function prediction only]
Probab=99.96 E-value=8.1e-30 Score=232.19 Aligned_cols=222 Identities=24% Similarity=0.353 Sum_probs=169.6
Q ss_pred cccCCCccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccC--CCCCCcEEEEEecCCCCChhhHHHHHH
Q 022351 20 SQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHH--PFSSSRRILVLNKMDLASPTQFKEWIT 97 (298)
Q Consensus 20 ~~~~~~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l--~~~~k~~IiVlNK~DL~~~~~~~~~~~ 97 (298)
.+.....|.+++.....+.+++.++.+|+||+|+|||+|++++..+..+++ ..+++.+|+|+||+||+|.+.+++|+.
T Consensus 121 ~~~~~~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~ 200 (435)
T KOG2484|consen 121 EEYENALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLV 200 (435)
T ss_pred HHhhhhccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHH
Confidence 445567899999888899999999999999999999999999998887764 235699999999999999999999999
Q ss_pred HHHccCCCEEEEecCCC-------------cCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhh
Q 022351 98 FFDQQNCPSFGVNSHNK-------------DNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 98 ~~~~~~~~vi~iSa~~~-------------~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
|+++.+..+.+.++... .|.+.++..+.++-.. ..-...++++|+|.|||||||+||+|.+
T Consensus 201 YLr~~~ptv~fkast~~~~~~~~~~~~s~c~gae~l~~~lgny~~~------~~lk~sIrvGViG~PNVGKSSvINsL~~ 274 (435)
T KOG2484|consen 201 YLRREGPTVAFKASTQMQNSNSKNLQSSVCFGAETLMKVLGNYCRK------GELKTSIRVGIIGYPNVGKSSVINSLKR 274 (435)
T ss_pred HHHhhCCcceeecccccccccccccccchhhhHHHHHHHhcCcccc------cccCcceEeeeecCCCCChhHHHHHHHH
Confidence 99766655554433221 1344444444332111 1124578999999999999999999983
Q ss_pred hcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccC-CCChHHHHHH
Q 022351 165 IGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDS-FVGGKELAQY 243 (298)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~-~~~~~~~~~~ 243 (298)
.+.+.+++.||+|+.++.+++.. ++.|+|.||+..+...+.+ .+++..|++.+ ..++...+.+
T Consensus 275 -----------~k~C~vg~~pGvT~smqeV~Ldk--~i~llDsPgiv~~~~~~~~---~~~Lrn~~~i~~~~dp~~~v~~ 338 (435)
T KOG2484|consen 275 -----------RKACNVGNVPGVTRSMQEVKLDK--KIRLLDSPGIVPPSIDEKD---ALALRNCIPIGKVADPVTPVSC 338 (435)
T ss_pred -----------hccccCCCCccchhhhhheeccC--CceeccCCceeecCCCccc---hhhhhcccccccccCccchHHH
Confidence 67799999999999999987654 5999999999998776544 68889999877 5566666777
Q ss_pred HHHHHccCCchhHHHhhccc
Q 022351 244 FLGILNFSDEYKKWAKFSIN 263 (298)
Q Consensus 244 ~l~~l~~~~~~~~~~~~~~~ 263 (298)
+|..+....-...|......
T Consensus 339 iL~~~~~e~~~~~Y~~~~~~ 358 (435)
T KOG2484|consen 339 ILKRCSKESRSVLYNIPSIR 358 (435)
T ss_pred HHHHhhHHHHHHHhcCCCcc
Confidence 77766654434444443333
No 8
>PRK12289 GTPase RsgA; Reviewed
Probab=99.96 E-value=2.6e-29 Score=233.17 Aligned_cols=184 Identities=22% Similarity=0.239 Sum_probs=145.2
Q ss_pred HHHhcCCCCeEEEEEeCCCCCCcccHHHhccC---CCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCc
Q 022351 39 IADRMPLVDIILEVRDARIPFSSEFDQLRNHH---PFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKD 115 (298)
Q Consensus 39 i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l---~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~ 115 (298)
.+..+.++|.|++|+|+..|.... ..+.+++ ...++|+++|+||+||++.+..+.|.+.|...+++++++||.++.
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~-~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~ 161 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDP-WQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGI 161 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCH-HHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCC
Confidence 345689999999999998764322 1222222 235899999999999998777788888887778899999999999
Q ss_pred CHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCC-------ee
Q 022351 116 NVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPG-------ET 188 (298)
Q Consensus 116 gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg-------~T 188 (298)
|+++|++.+.. ..++|+|.||||||||||+|++ .....++..+| ||
T Consensus 162 GI~eL~~~L~~----------------ki~v~iG~SgVGKSSLIN~L~~-----------~~~~~t~~vs~~~~rGrHTT 214 (352)
T PRK12289 162 GLEALLEQLRN----------------KITVVAGPSGVGKSSLINRLIP-----------DVELRVGKVSGKLGRGRHTT 214 (352)
T ss_pred CHHHHhhhhcc----------------ceEEEEeCCCCCHHHHHHHHcC-----------ccccccccccCCCCCCCCcC
Confidence 99998888742 1479999999999999999983 44566677777 88
Q ss_pred eeeEEEEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCCChHHHHHHHHHHHc----cCCchhHHHhhcccC
Q 022351 189 KDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN----FSDEYKKWAKFSINQ 264 (298)
Q Consensus 189 ~~~~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~----~~~~~~~~~~~~~~~ 264 (298)
++.+.+.+..+ .+|+|||||..+++. +++.+++.||.++-. ....|++|.|.++|+
T Consensus 215 ~~~~l~~l~~g--~~liDTPG~~~~~l~------------------~~~~~l~~~F~e~~~~~~~~~CrF~dC~H~~EPg 274 (352)
T PRK12289 215 RHVELFELPNG--GLLADTPGFNQPDLD------------------CSPRELAHYFPEARQRLAQGNCQFNDCLHRDEPN 274 (352)
T ss_pred ceeEEEECCCC--cEEEeCCCccccccc------------------cCHHHHHhhHHHHHHhHhhCceEccCCccCCCCC
Confidence 98888776543 599999999998873 246677888877765 357899999999999
Q ss_pred CCcccc
Q 022351 265 INKPLT 270 (298)
Q Consensus 265 ~~~~~~ 270 (298)
|.|+.-
T Consensus 275 CaV~~~ 280 (352)
T PRK12289 275 CAVRGD 280 (352)
T ss_pred hhhhhh
Confidence 999863
No 9
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.96 E-value=3.4e-29 Score=222.72 Aligned_cols=193 Identities=21% Similarity=0.249 Sum_probs=146.3
Q ss_pred HHhcCCCCeEEEEEeCCCCCCcccHHHhccC---CCCCCcEEEEEecCCCCChhhH-HHHHHHHHccCCCEEEEecCCCc
Q 022351 40 ADRMPLVDIILEVRDARIPFSSEFDQLRNHH---PFSSSRRILVLNKMDLASPTQF-KEWITFFDQQNCPSFGVNSHNKD 115 (298)
Q Consensus 40 ~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l---~~~~k~~IiVlNK~DL~~~~~~-~~~~~~~~~~~~~vi~iSa~~~~ 115 (298)
+.++.++|.++.|+|+++|..+.+. +.+++ ...+.|+++|+||+||.+.... .++.+.+...+++++.+||+++.
T Consensus 31 r~~~~n~D~viiV~d~~~p~~s~~~-l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~ 109 (245)
T TIGR00157 31 RPIVANIDQIVIVSSAVLPELSLNQ-LDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQD 109 (245)
T ss_pred CcccccCCEEEEEEECCCCCCCHHH-HHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCch
Confidence 3579999999999999988755432 22222 2367999999999999764433 36777776778899999999999
Q ss_pred CHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeec----CCCCeeeee
Q 022351 116 NVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVS----PQPGETKDI 191 (298)
Q Consensus 116 gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~----~~pg~T~~~ 191 (298)
|+++|.+.+.+ ..++++|.||||||||||+|++... .+...++ ....||++.
T Consensus 110 gi~eLf~~l~~----------------~~~~~~G~sgvGKStLiN~L~~~~~--------~~t~~i~~~~~~G~hTT~~~ 165 (245)
T TIGR00157 110 GLKELIEALQN----------------RISVFAGQSGVGKSSLINALDPSVK--------QQVNDISSKLGLGKHTTTHV 165 (245)
T ss_pred hHHHHHhhhcC----------------CEEEEECCCCCCHHHHHHHHhhhhh--------ccccceeccCCCCCCcCCce
Confidence 99998887641 2689999999999999999984110 1111222 223478888
Q ss_pred EEEEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCCChHHHHHHHHHHHcc--CCchhHHHhhcccCCCccc
Q 022351 192 YSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNF--SDEYKKWAKFSINQINKPL 269 (298)
Q Consensus 192 ~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~~~~~~~~~ 269 (298)
+.+.+. +.+|+|||||..+++.+ +++++++.||.++... ...|++|.|.++|+|+|++
T Consensus 166 ~l~~l~---~~~liDtPG~~~~~l~~-----------------~~~~~~~~~f~e~~~~~~~C~f~~C~H~~ep~C~v~~ 225 (245)
T TIGR00157 166 ELFHFH---GGLIADTPGFNEFGLWH-----------------LEPEQLTQGFVEFRDYLGECKFRDCLHQSEPGCAVRQ 225 (245)
T ss_pred EEEEcC---CcEEEeCCCccccCCCC-----------------CCHHHHHHhCHHHHHHhCCCCCCCCccCCCCCChHHH
Confidence 887762 36999999999999876 4567788888887664 4688999999999999999
Q ss_pred ccccccCC
Q 022351 270 TLHHKADQ 277 (298)
Q Consensus 270 ~~~~~~~~ 277 (298)
.++...-.
T Consensus 226 a~~~g~i~ 233 (245)
T TIGR00157 226 AVEQGEIS 233 (245)
T ss_pred HHHcCCCC
Confidence 98865443
No 10
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.95 E-value=2.9e-27 Score=193.20 Aligned_cols=138 Identities=30% Similarity=0.463 Sum_probs=117.0
Q ss_pred HHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCC--CCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCC
Q 022351 36 TRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFS--SSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHN 113 (298)
Q Consensus 36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~--~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~ 113 (298)
++.+++.++++|+|++|+|++.|....+..+.+++... ++|+++|+||+|+.+++....|.++++..+.+++++||.+
T Consensus 2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~ 81 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALK 81 (141)
T ss_pred HHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecC
Confidence 46778899999999999999999888877777665433 8999999999999887777788888877778899999987
Q ss_pred CcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE
Q 022351 114 KDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS 193 (298)
Q Consensus 114 ~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~ 193 (298)
+.+ +++++|.||||||||+|+|++ .+...++..||+|++.+.
T Consensus 82 ~~~---------------------------~~~~~G~~~vGKstlin~l~~-----------~~~~~~~~~~~~~~~~~~ 123 (141)
T cd01857 82 ENA---------------------------TIGLVGYPNVGKSSLINALVG-----------KKKVSVSATPGKTKHFQT 123 (141)
T ss_pred CCc---------------------------EEEEECCCCCCHHHHHHHHhC-----------CCceeeCCCCCcccceEE
Confidence 654 579999999999999999983 455678999999999888
Q ss_pred EEEccCCCEEEEeCCCCCCC
Q 022351 194 LKIASHPNIYVLDTPGILPP 213 (298)
Q Consensus 194 ~~~~~~~~~~liDTPGi~~~ 213 (298)
+.+.. +++|+||||+..|
T Consensus 124 ~~~~~--~~~i~DtpG~~~p 141 (141)
T cd01857 124 IFLTP--TITLCDCPGLVFP 141 (141)
T ss_pred EEeCC--CEEEEECCCcCCC
Confidence 77743 6999999999875
No 11
>PRK12288 GTPase RsgA; Reviewed
Probab=99.95 E-value=1.8e-27 Score=220.94 Aligned_cols=188 Identities=17% Similarity=0.167 Sum_probs=142.9
Q ss_pred hcCCCCeEEEEEeCCCCCCcccHHHhcc---CCCCCCcEEEEEecCCCCChh---hHHHHHHHHHccCCCEEEEecCCCc
Q 022351 42 RMPLVDIILEVRDARIPFSSEFDQLRNH---HPFSSSRRILVLNKMDLASPT---QFKEWITFFDQQNCPSFGVNSHNKD 115 (298)
Q Consensus 42 ~l~~aDlVl~VvDa~~p~~~~~~~l~~~---l~~~~k~~IiVlNK~DL~~~~---~~~~~~~~~~~~~~~vi~iSa~~~~ 115 (298)
...++|.++.|.+.. |..+.. .+.++ ....++|+++|+||+||.+.. ....+.+.|...+++++.+||+++.
T Consensus 117 iaANvD~vlIV~s~~-p~~s~~-~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 117 IAANIDQIVIVSAVL-PELSLN-IIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEEccEEEEEEeCC-CCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 468899999998865 333221 22222 223678999999999998754 3456777776778899999999999
Q ss_pred CHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCC-------ee
Q 022351 116 NVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPG-------ET 188 (298)
Q Consensus 116 gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg-------~T 188 (298)
|+++|.+.+... .++|+|.||||||||||+|++ .....++..++ ||
T Consensus 195 GideL~~~L~~k----------------i~~~vG~sgVGKSTLiN~Ll~-----------~~~~~t~~is~~~~rGrHTT 247 (347)
T PRK12288 195 GLEELEAALTGR----------------ISIFVGQSGVGKSSLINALLP-----------EAEILVGDVSDNSGLGQHTT 247 (347)
T ss_pred CHHHHHHHHhhC----------------CEEEECCCCCCHHHHHHHhcc-----------ccceeeccccCcCCCCcCce
Confidence 999999887521 478999999999999999983 33444554443 67
Q ss_pred eeeEEEEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCCChHHHHHHHHHHHc--cCCchhHHHhhcccCCC
Q 022351 189 KDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKWAKFSINQIN 266 (298)
Q Consensus 189 ~~~~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~--~~~~~~~~~~~~~~~~~ 266 (298)
+..+.+.+.. +..|+|||||...++.+ ++++.+..||.++.. ....|++|.|.++|+|+
T Consensus 248 ~~~~l~~l~~--~~~liDTPGir~~~l~~-----------------~~~~~l~~~F~ei~~~~~~CrF~dC~H~~EpgCa 308 (347)
T PRK12288 248 TAARLYHFPH--GGDLIDSPGVREFGLWH-----------------LEPEQVTQGFVEFRDYLGTCKFRDCKHDDDPGCA 308 (347)
T ss_pred eeEEEEEecC--CCEEEECCCCCcccCCC-----------------CCHHHHHHhhHHHHHHhcCCCCCCCccCCCCCCh
Confidence 7777777743 35799999999998875 356778889988865 45789999999999999
Q ss_pred cccccccccCC
Q 022351 267 KPLTLHHKADQ 277 (298)
Q Consensus 267 ~~~~~~~~~~~ 277 (298)
|++.++...-.
T Consensus 309 V~~Av~~g~i~ 319 (347)
T PRK12288 309 LREAVEEGKIA 319 (347)
T ss_pred HHHHHHcCCCC
Confidence 99988765444
No 12
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.95 E-value=6.4e-27 Score=197.27 Aligned_cols=145 Identities=33% Similarity=0.517 Sum_probs=109.3
Q ss_pred CeEEEEEeCCCCCCcccHHHhcc--CCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCC-----------
Q 022351 47 DIILEVRDARIPFSSEFDQLRNH--HPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHN----------- 113 (298)
Q Consensus 47 DlVl~VvDa~~p~~~~~~~l~~~--l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~----------- 113 (298)
|+|++|+|++.|+.+.++.+.+. +...++|+|+|+||+||++++.+..|.+++++....+.+.|+..
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV 80 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence 89999999999999988888776 54567999999999999998889999999965432332333221
Q ss_pred --------------CcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccce
Q 022351 114 --------------KDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHA 179 (298)
Q Consensus 114 --------------~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~ 179 (298)
+.|.+.+++.+.+.... ......++++++|.||||||||||+|++ .+.+
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~vG~pnvGKSslin~l~~-----------~~~~ 143 (172)
T cd04178 81 KVEAASADLLRSSVCFGADCLLKLLKNYSRN------KDIKTSITVGVVGFPNVGKSSLINSLKR-----------SRAC 143 (172)
T ss_pred ccchhhhhhhhhccccCHHHHHHHHHHHhhc------cccccCcEEEEEcCCCCCHHHHHHHHhC-----------cccc
Confidence 22233444444332221 1123458999999999999999999993 5677
Q ss_pred eecCCCCeeeeeEEEEEccCCCEEEEeCCCC
Q 022351 180 TVSPQPGETKDIYSLKIASHPNIYVLDTPGI 210 (298)
Q Consensus 180 ~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi 210 (298)
.+++.||+|++.+.+.+. .+++|+||||+
T Consensus 144 ~~~~~pg~T~~~~~~~~~--~~~~l~DtPGi 172 (172)
T cd04178 144 NVGATPGVTKSMQEVHLD--KKVKLLDSPGI 172 (172)
T ss_pred eecCCCCeEcceEEEEeC--CCEEEEECcCC
Confidence 899999999999887764 36999999997
No 13
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.95 E-value=1.7e-27 Score=221.99 Aligned_cols=168 Identities=20% Similarity=0.278 Sum_probs=136.0
Q ss_pred HHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC-CEEEEec
Q 022351 33 AAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC-PSFGVNS 111 (298)
Q Consensus 33 ~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~-~vi~iSa 111 (298)
....++...++.+||+||+|+|++.+++..+..+.++++..++|+++|+||+|-...+ ....++| .+|+ +++++||
T Consensus 71 ~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e--~~~~efy-slG~g~~~~ISA 147 (444)
T COG1160 71 ELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAE--ELAYEFY-SLGFGEPVPISA 147 (444)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhh--hhHHHHH-hcCCCCceEeeh
Confidence 4445677788999999999999999999999999988876789999999999986332 3344556 5666 7899999
Q ss_pred CCCcCHHHHHHHHHHHHHhhhhccCCCC-CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeee
Q 022351 112 HNKDNVKEFLKFLQAHVRNLRKSDYDAS-SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKD 190 (298)
Q Consensus 112 ~~~~gi~~L~~~l~~~i~~~~~~~~~~~-~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~ 190 (298)
.+|.|+.+|++.+...++ ..+...... ..+++++++|.||||||||+|+|+ ++.++.+++.|||||+
T Consensus 148 ~Hg~Gi~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~il-----------geeR~Iv~~~aGTTRD 215 (444)
T COG1160 148 EHGRGIGDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSSLINAIL-----------GEERVIVSDIAGTTRD 215 (444)
T ss_pred hhccCHHHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchHHHHHhc-----------cCceEEecCCCCcccc
Confidence 999999999999998873 111111111 257999999999999999999999 4788999999999999
Q ss_pred eEEEEE-ccCCCEEEEeCCCCCCCCC
Q 022351 191 IYSLKI-ASHPNIYVLDTPGILPPEI 215 (298)
Q Consensus 191 ~~~~~~-~~~~~~~liDTPGi~~~~~ 215 (298)
.....+ .+++.+.+|||.|++....
T Consensus 216 ~I~~~~e~~~~~~~liDTAGiRrk~k 241 (444)
T COG1160 216 SIDIEFERDGRKYVLIDTAGIRRKGK 241 (444)
T ss_pred ceeeeEEECCeEEEEEECCCCCcccc
Confidence 886554 3455799999999987543
No 14
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.95 E-value=4.8e-27 Score=219.88 Aligned_cols=172 Identities=29% Similarity=0.422 Sum_probs=134.9
Q ss_pred HHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCC--CCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEe
Q 022351 33 AAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPF--SSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVN 110 (298)
Q Consensus 33 ~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~--~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iS 110 (298)
.+.|+++++.++++|+|+.|||||.|+..+.++|..+.+. ..|..++++||+||++++....|.+||...++++++.|
T Consensus 162 LE~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~S 241 (562)
T KOG1424|consen 162 LEIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFS 241 (562)
T ss_pred HHHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEe
Confidence 5789999999999999999999999999999999888654 45888999999999999999999999988889999999
Q ss_pred cCCC----------------cCHHHHHH------------HHH---HH---HHhhhhcc-C------CCCCCceEEEEEc
Q 022351 111 SHNK----------------DNVKEFLK------------FLQ---AH---VRNLRKSD-Y------DASSDTVTVMLLG 149 (298)
Q Consensus 111 a~~~----------------~gi~~L~~------------~l~---~~---i~~~~~~~-~------~~~~~~~~i~vvG 149 (298)
|... +++..-.. ... .. +......+ + ......++|++||
T Consensus 242 A~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VG 321 (562)
T KOG1424|consen 242 ALAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVG 321 (562)
T ss_pred cccccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeec
Confidence 8751 11111111 000 00 00000000 0 0112358999999
Q ss_pred CCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCCC
Q 022351 150 IPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHD 217 (298)
Q Consensus 150 ~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~~ 217 (298)
+|||||||+||+|. +.|...||..||.|++.|.+.+.. .+.|.|+||++.|++..
T Consensus 322 YPNVGKSSTINaLv-----------G~KkVsVS~TPGkTKHFQTi~ls~--~v~LCDCPGLVfPSf~~ 376 (562)
T KOG1424|consen 322 YPNVGKSSTINALV-----------GRKKVSVSSTPGKTKHFQTIFLSP--SVCLCDCPGLVFPSFSP 376 (562)
T ss_pred CCCCchhHHHHHHh-----------cCceeeeecCCCCcceeEEEEcCC--CceecCCCCccccCCCc
Confidence 99999999999999 378899999999999999987764 58999999999999876
No 15
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.94 E-value=4.2e-26 Score=189.19 Aligned_cols=151 Identities=30% Similarity=0.447 Sum_probs=117.3
Q ss_pred CeEEEEEeCCCCCCcccHHHh-ccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHcc-CCCEEEEecCCCcCHHHHHHHH
Q 022351 47 DIILEVRDARIPFSSEFDQLR-NHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQ-NCPSFGVNSHNKDNVKEFLKFL 124 (298)
Q Consensus 47 DlVl~VvDa~~p~~~~~~~l~-~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~-~~~vi~iSa~~~~gi~~L~~~l 124 (298)
|+|++|+|++.|....+..+. ..+...++|+++|+||+|+++.+.+..|+..+... +..++++||+++.|+++|.+.+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i 80 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAF 80 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHH
Confidence 799999999999888777666 34444689999999999998877777787666433 4568999999999999999988
Q ss_pred HHHHHhhhhcc--CCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCE
Q 022351 125 QAHVRNLRKSD--YDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202 (298)
Q Consensus 125 ~~~i~~~~~~~--~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~ 202 (298)
.+...+..+.. -.......+++++|.||||||||+|+|++ .+...++..||||++.+.+.+. .++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~-----------~~~~~~~~~~~~t~~~~~~~~~--~~~ 147 (155)
T cd01849 81 TKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLN-----------KLKLKVGNVPGTTTSQQEVKLD--NKI 147 (155)
T ss_pred HHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHc-----------cccccccCCCCcccceEEEEec--CCE
Confidence 66443211100 01124568999999999999999999993 4456689999999999887654 469
Q ss_pred EEEeCCCC
Q 022351 203 YVLDTPGI 210 (298)
Q Consensus 203 ~liDTPGi 210 (298)
+|+||||+
T Consensus 148 ~liDtPG~ 155 (155)
T cd01849 148 KLLDTPGI 155 (155)
T ss_pred EEEECCCC
Confidence 99999997
No 16
>PRK00098 GTPase RsgA; Reviewed
Probab=99.94 E-value=3.2e-26 Score=209.21 Aligned_cols=190 Identities=19% Similarity=0.218 Sum_probs=141.0
Q ss_pred hcCCCCeEEEEEeCCCCCCcccH--HHhccCCCCCCcEEEEEecCCCC-ChhhHHHHHHHHHccCCCEEEEecCCCcCHH
Q 022351 42 RMPLVDIILEVRDARIPFSSEFD--QLRNHHPFSSSRRILVLNKMDLA-SPTQFKEWITFFDQQNCPSFGVNSHNKDNVK 118 (298)
Q Consensus 42 ~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~~~~k~~IiVlNK~DL~-~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~ 118 (298)
.+.++|++++|+|+..|...... .+...+...++|+++|+||+||. +.+....|.+.++..+++++++||+++.|++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~ 156 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGLD 156 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccHH
Confidence 46999999999999877543321 12211224679999999999997 3444556777776678899999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCC-------eeeee
Q 022351 119 EFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPG-------ETKDI 191 (298)
Q Consensus 119 ~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg-------~T~~~ 191 (298)
+|++.+. +..++++|.||||||||||+|++. ....++..++ ||+..
T Consensus 157 ~L~~~l~----------------gk~~~~~G~sgvGKStlin~l~~~-----------~~~~~g~v~~~~~~G~htT~~~ 209 (298)
T PRK00098 157 ELKPLLA----------------GKVTVLAGQSGVGKSTLLNALAPD-----------LELKTGEISEALGRGKHTTTHV 209 (298)
T ss_pred HHHhhcc----------------CceEEEECCCCCCHHHHHHHHhCC-----------cCCCCcceeccCCCCCcccccE
Confidence 9888763 237899999999999999999841 2222333332 67777
Q ss_pred EEEEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCCChHHHHHHHHHHHc--cCCchhHHHhhcccCCCccc
Q 022351 192 YSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKWAKFSINQINKPL 269 (298)
Q Consensus 192 ~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~--~~~~~~~~~~~~~~~~~~~~ 269 (298)
+.+.+.. ..+|+||||+...++.. ++..++..+|..+-. ....+++|.|+++|+|.|.+
T Consensus 210 ~~~~~~~--~~~~~DtpG~~~~~~~~-----------------~~~~~~~~~f~~~~~~~~~c~f~~c~h~~ep~c~v~~ 270 (298)
T PRK00098 210 ELYDLPG--GGLLIDTPGFSSFGLHD-----------------LEAEELEHYFPEFRPLSGDCKFRNCTHLHEPGCAVKA 270 (298)
T ss_pred EEEEcCC--CcEEEECCCcCccCCCC-----------------CCHHHHHHHHHHHHHHhCCCCCCCCcCCCCCCChHHH
Confidence 7766643 36999999999887764 356667777766544 45678999999999999999
Q ss_pred ccccccCC
Q 022351 270 TLHHKADQ 277 (298)
Q Consensus 270 ~~~~~~~~ 277 (298)
.++.....
T Consensus 271 a~~~g~i~ 278 (298)
T PRK00098 271 AVEEGEIA 278 (298)
T ss_pred HHHcCCCC
Confidence 98865544
No 17
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.94 E-value=2.3e-25 Score=184.67 Aligned_cols=152 Identities=30% Similarity=0.428 Sum_probs=119.6
Q ss_pred HHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCcCH
Q 022351 38 AIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNV 117 (298)
Q Consensus 38 ~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi 117 (298)
.++..+.++|++++|+|++.|....+..+..++...++|+++|+||+|+.+......|..+....+.+++++||+++.|+
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi 84 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGT 84 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccH
Confidence 34456677999999999998877777666554434579999999999998765555554444344568999999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc
Q 022351 118 KEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197 (298)
Q Consensus 118 ~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~ 197 (298)
++|++.+.+.++.. ....+++++|.||||||||+|+|.+ .....+++.+|+|++.+.+...
T Consensus 85 ~~L~~~l~~~~~~~--------~~~~~~~~ig~~~~Gkssl~~~l~~-----------~~~~~~~~~~~~t~~~~~~~~~ 145 (156)
T cd01859 85 KILRRTIKELAKID--------GKEGKVGVVGYPNVGKSSIINALKG-----------RHSASTSPSPGYTKGEQLVKIT 145 (156)
T ss_pred HHHHHHHHHHHhhc--------CCCcEEEEECCCCCCHHHHHHHHhC-----------CCccccCCCCCeeeeeEEEEcC
Confidence 99999998877641 3457889999999999999999982 4466788999999887765543
Q ss_pred cCCCEEEEeCCCC
Q 022351 198 SHPNIYVLDTPGI 210 (298)
Q Consensus 198 ~~~~~~liDTPGi 210 (298)
.+++++||||+
T Consensus 146 --~~~~~~DtpGi 156 (156)
T cd01859 146 --SKIYLLDTPGV 156 (156)
T ss_pred --CCEEEEECcCC
Confidence 36999999996
No 18
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.94 E-value=1.3e-25 Score=192.17 Aligned_cols=158 Identities=25% Similarity=0.295 Sum_probs=117.5
Q ss_pred HHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhh----HHHHHH--HHHccCC---C
Q 022351 35 ATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ----FKEWIT--FFDQQNC---P 105 (298)
Q Consensus 35 ~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~----~~~~~~--~~~~~~~---~ 105 (298)
....+..+++++|+|++|+|++.+.......+... ..++|+++|+||+|+.+.+. .+.|.. .++..+. +
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKD 101 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCccc
Confidence 35666788999999999999998776666655332 25789999999999975432 233431 1122232 6
Q ss_pred EEEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCC
Q 022351 106 SFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQP 185 (298)
Q Consensus 106 vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~p 185 (298)
++++||+++.|+++|++.+.+.++. +.+++++|.||||||||||+|++....... ......++..|
T Consensus 102 i~~vSA~~~~gi~eL~~~l~~~l~~-----------~~~~~~~G~~nvGKStliN~l~~~~~~~~~---~~~~~~~~~~~ 167 (190)
T cd01855 102 VILISAKKGWGVEELINAIKKLAKK-----------GGDVYVVGATNVGKSTLINALLKKDNGKKK---LKDLLTTSPIP 167 (190)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhc-----------CCcEEEEcCCCCCHHHHHHHHHHhcccccc---cccccccCCCC
Confidence 8999999999999999999877642 358999999999999999999953211000 01346789999
Q ss_pred CeeeeeEEEEEccCCCEEEEeCCCC
Q 022351 186 GETKDIYSLKIASHPNIYVLDTPGI 210 (298)
Q Consensus 186 g~T~~~~~~~~~~~~~~~liDTPGi 210 (298)
|||++.+.+.+.. +++|+|||||
T Consensus 168 gtT~~~~~~~~~~--~~~~~DtPG~ 190 (190)
T cd01855 168 GTTLDLIKIPLGN--GKKLYDTPGI 190 (190)
T ss_pred CeeeeeEEEecCC--CCEEEeCcCC
Confidence 9999999887743 5899999997
No 19
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.94 E-value=7e-26 Score=202.76 Aligned_cols=195 Identities=21% Similarity=0.269 Sum_probs=152.1
Q ss_pred HHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccC---CCCCCcEEEEEecCCCCChhhHH--HHHHHHHccCCCEEEEec
Q 022351 37 RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHH---PFSSSRRILVLNKMDLASPTQFK--EWITFFDQQNCPSFGVNS 111 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l---~~~~k~~IiVlNK~DL~~~~~~~--~~~~~~~~~~~~vi~iSa 111 (298)
...+..+.++|-+++|+.+..|..+.+. +.++| ...+...+|++||+||++++... ++...|...|++++.+|+
T Consensus 71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~-ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~ 149 (301)
T COG1162 71 VLIRPPVANNDQAIIVVSLVDPDFNTNL-LDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSA 149 (301)
T ss_pred ceeCCcccccceEEEEEeccCCCCCHHH-HHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecC
Confidence 3445668889999999988888655432 22221 24688999999999999876554 566777788999999999
Q ss_pred CCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHh-----hhcchhhhhcCCccceeecCCCC
Q 022351 112 HNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLH-----QIGRITAAEKGKLRHATVSPQPG 186 (298)
Q Consensus 112 ~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~-----~~~~~~~~~~~~~~~~~~~~~pg 186 (298)
+++.++++|.+.+.. -..+++|+||||||||||+|. +++++|... ++++|+
T Consensus 150 ~~~~~~~~l~~~l~~----------------~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~-~rGkHT------- 205 (301)
T COG1162 150 KNGDGLEELAELLAG----------------KITVLLGQSGVGKSTLINALLPELNQKTGEISEKL-GRGRHT------- 205 (301)
T ss_pred cCcccHHHHHHHhcC----------------CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccC-CCCCCc-------
Confidence 999999998888742 267899999999999999997 356666543 345665
Q ss_pred eeeeeEEEEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCCChHHHHHHHHHHHcc--CCchhHHHhhcccC
Q 022351 187 ETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNF--SDEYKKWAKFSINQ 264 (298)
Q Consensus 187 ~T~~~~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~~~~ 264 (298)
|+....+.+.. +.+|||||||.+.++.. +.++++..||.++.+. ...|++|.|.++|+
T Consensus 206 -Tt~~~l~~l~~--gG~iiDTPGf~~~~l~~-----------------~~~e~l~~~F~ef~~~~~~CkFr~C~H~~EPg 265 (301)
T COG1162 206 -TTHVELFPLPG--GGWIIDTPGFRSLGLAH-----------------LEPEDLVQAFPEFAELARQCKFRDCTHTHEPG 265 (301)
T ss_pred -cceEEEEEcCC--CCEEEeCCCCCccCccc-----------------CCHHHHHHHhHHHHHHhcCCCCCCCCCCCCCC
Confidence 66666666643 47999999999998854 5688999999998877 56899999999999
Q ss_pred CCcccccccccC
Q 022351 265 INKPLTLHHKAD 276 (298)
Q Consensus 265 ~~~~~~~~~~~~ 276 (298)
|+|++.++....
T Consensus 266 Cav~~av~~g~i 277 (301)
T COG1162 266 CAVKAAVEEGEI 277 (301)
T ss_pred cHHHHHHHcCCC
Confidence 999999876543
No 20
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.93 E-value=5e-26 Score=206.90 Aligned_cols=195 Identities=18% Similarity=0.206 Sum_probs=142.4
Q ss_pred HhcCCCCeEEEEEeCCCCCCcccHHHhcc---CCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCcCH
Q 022351 41 DRMPLVDIILEVRDARIPFSSEFDQLRNH---HPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNV 117 (298)
Q Consensus 41 ~~l~~aDlVl~VvDa~~p~~~~~~~l~~~---l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi 117 (298)
..+.++|++++|+|++.|..+.. .+.++ +...++|+++|+||+||.+......|...+...+++++++||+++.|+
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~-~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi 152 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPR-LLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGL 152 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHH-HHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccH
Confidence 45899999999999998762211 22222 123679999999999998765444556656567889999999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc
Q 022351 118 KEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197 (298)
Q Consensus 118 ~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~ 197 (298)
++|...+.. ..++++|.+|||||||||+|++...... | .-....+..++||++.+.+.+.
T Consensus 153 ~~L~~~L~~----------------k~~~~~G~sg~GKSTlin~l~~~~~~~~---g-~v~~~~~~g~~tT~~~~~~~~~ 212 (287)
T cd01854 153 DELREYLKG----------------KTSVLVGQSGVGKSTLINALLPDLDLAT---G-EISEKLGRGRHTTTHRELFPLP 212 (287)
T ss_pred HHHHhhhcc----------------ceEEEECCCCCCHHHHHHHHhchhhccc---c-ceeccCCCCCcccceEEEEEcC
Confidence 998887742 3789999999999999999985211100 0 0001122344578888777664
Q ss_pred cCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCCChHHHHHHHHHHHcc--CCchhHHHhhcccCCCccccccccc
Q 022351 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNF--SDEYKKWAKFSINQINKPLTLHHKA 275 (298)
Q Consensus 198 ~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (298)
. ..+|+||||+..+.+.. ++..++..||.++... ...|++|.|.++|+|+|++.++...
T Consensus 213 ~--~~~liDtPG~~~~~~~~-----------------~~~~~~~~~f~~~~~~~~~C~F~~C~H~~Ep~Cav~~av~~g~ 273 (287)
T cd01854 213 G--GGLLIDTPGFREFGLLH-----------------IDPEELAHYFPEFRELAGQCKFRDCTHTNEPGCAVKAAVEAGE 273 (287)
T ss_pred C--CCEEEECCCCCccCCcc-----------------CCHHHHHHHhHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHcCC
Confidence 3 35899999998877543 3567788888877654 5689999999999999999988644
No 21
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=99.93 E-value=2.1e-25 Score=202.70 Aligned_cols=193 Identities=23% Similarity=0.412 Sum_probs=148.6
Q ss_pred hhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCC--CCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEE
Q 022351 30 PHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPF--SSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSF 107 (298)
Q Consensus 30 ghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~--~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi 107 (298)
|+-.+.+..+.+.|+.+|+||.|+|||+|+.++...+.++++. ..+..|+|+||+||++......|+..+. ..++.+
T Consensus 198 GQSkRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lS-keyPTi 276 (572)
T KOG2423|consen 198 GQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLS-KEYPTI 276 (572)
T ss_pred cchhHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHh-hhCcce
Confidence 5556778888899999999999999999999999988888764 4678999999999999999999999994 455655
Q ss_pred EE--ecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCC
Q 022351 108 GV--NSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQP 185 (298)
Q Consensus 108 ~i--Sa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~p 185 (298)
.+ |-.+..|-..|++.+.+...- ......+.|+|||+|||||||+||+|. +.+.+.+++.|
T Consensus 277 AfHAsi~nsfGKgalI~llRQf~kL------h~dkkqISVGfiGYPNvGKSSiINTLR-----------~KkVCkvAPIp 339 (572)
T KOG2423|consen 277 AFHASINNSFGKGALIQLLRQFAKL------HSDKKQISVGFIGYPNVGKSSIINTLR-----------KKKVCKVAPIP 339 (572)
T ss_pred eeehhhcCccchhHHHHHHHHHHhh------ccCccceeeeeecCCCCchHHHHHHHh-----------hcccccccCCC
Confidence 44 333445666777777765443 234667999999999999999999998 57899999999
Q ss_pred CeeeeeEEEEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCC-ChHHHHHHHH
Q 022351 186 GETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFV-GGKELAQYFL 245 (298)
Q Consensus 186 g~T~~~~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~-~~~~~~~~~l 245 (298)
|-|+-.|.+.+. +.++|||+||+..|.-.. + -.+.+.|.++-.-+ .++...+-+|
T Consensus 340 GETKVWQYItLm--krIfLIDcPGvVyps~ds-e--t~ivLkGvVRVenv~~pe~yi~~vl 395 (572)
T KOG2423|consen 340 GETKVWQYITLM--KRIFLIDCPGVVYPSSDS-E--TDIVLKGVVRVENVKNPEDYIDGVL 395 (572)
T ss_pred CcchHHHHHHHH--hceeEecCCCccCCCCCc-h--HHHHhhceeeeeecCCHHHHHHHHH
Confidence 999877754433 469999999999988633 2 23567777774444 3444333333
No 22
>PRK13796 GTPase YqeH; Provisional
Probab=99.92 E-value=1.1e-23 Score=197.38 Aligned_cols=156 Identities=23% Similarity=0.303 Sum_probs=120.3
Q ss_pred HHHHHHhcCCCC-eEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh----hhHHHHHHHH-HccCC---CE
Q 022351 36 TRAIADRMPLVD-IILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP----TQFKEWITFF-DQQNC---PS 106 (298)
Q Consensus 36 ~~~i~~~l~~aD-lVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~----~~~~~~~~~~-~~~~~---~v 106 (298)
.+.+.+.+..+| +|++|+|+.+...+..+.+.++. .++|+++|+||+||++. +.+.+|...+ +..++ ++
T Consensus 59 ~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v 136 (365)
T PRK13796 59 FLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDV 136 (365)
T ss_pred HHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcE
Confidence 344556666666 99999999988888888777763 47899999999999863 2345565544 33454 68
Q ss_pred EEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCC
Q 022351 107 FGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPG 186 (298)
Q Consensus 107 i~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg 186 (298)
+.+||+++.|+++|++.+.+.. .+.++++||.||||||||||+|++... +..+..++|..||
T Consensus 137 ~~vSAk~g~gI~eL~~~I~~~~------------~~~~v~vvG~~NvGKSTLiN~L~~~~~------~~~~~~~~s~~pG 198 (365)
T PRK13796 137 VLISAQKGHGIDELLEAIEKYR------------EGRDVYVVGVTNVGKSTLINRIIKEIT------GEKDVITTSRFPG 198 (365)
T ss_pred EEEECCCCCCHHHHHHHHHHhc------------CCCeEEEEcCCCCcHHHHHHHHHhhcc------CccceEEecCCCC
Confidence 9999999999999999987542 234799999999999999999985210 1235678999999
Q ss_pred eeeeeEEEEEccCCCEEEEeCCCCCCC
Q 022351 187 ETKDIYSLKIASHPNIYVLDTPGILPP 213 (298)
Q Consensus 187 ~T~~~~~~~~~~~~~~~liDTPGi~~~ 213 (298)
||++.+.+.+.. +.+|+||||+..+
T Consensus 199 TT~~~~~~~l~~--~~~l~DTPGi~~~ 223 (365)
T PRK13796 199 TTLDKIEIPLDD--GSFLYDTPGIIHR 223 (365)
T ss_pred ccceeEEEEcCC--CcEEEECCCcccc
Confidence 999999887654 3689999999754
No 23
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.91 E-value=3.1e-23 Score=194.14 Aligned_cols=158 Identities=25% Similarity=0.333 Sum_probs=122.7
Q ss_pred HHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh----hHHHHHH-HHHccCC---C
Q 022351 34 AATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT----QFKEWIT-FFDQQNC---P 105 (298)
Q Consensus 34 ~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~----~~~~~~~-~~~~~~~---~ 105 (298)
++.+.+..+...+++|++|+|+.+...+..+.+.+.+ .++|+++|+||+||++.. ...+|+. +++..++ +
T Consensus 52 ~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~ 129 (360)
T TIGR03597 52 DFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVD 129 (360)
T ss_pred HHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCc
Confidence 4455555667899999999999988888888887764 378999999999998643 3455553 3444555 5
Q ss_pred EEEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCC
Q 022351 106 SFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQP 185 (298)
Q Consensus 106 vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~p 185 (298)
++.+||+++.|++++++.+.+.. .+.++++||.||||||||||+|++... +..+..++|..|
T Consensus 130 i~~vSAk~g~gv~eL~~~l~~~~------------~~~~v~~vG~~nvGKStliN~l~~~~~------~~~~~~~~s~~p 191 (360)
T TIGR03597 130 IILVSAKKGNGIDELLDKIKKAR------------NKKDVYVVGVTNVGKSSLINKLLKQNN------GDKDVITTSPFP 191 (360)
T ss_pred EEEecCCCCCCHHHHHHHHHHHh------------CCCeEEEECCCCCCHHHHHHHHHhhcc------CCcceeeecCCC
Confidence 89999999999999999986542 135899999999999999999995211 112457899999
Q ss_pred CeeeeeEEEEEccCCCEEEEeCCCCCCC
Q 022351 186 GETKDIYSLKIASHPNIYVLDTPGILPP 213 (298)
Q Consensus 186 g~T~~~~~~~~~~~~~~~liDTPGi~~~ 213 (298)
|||++.+.+.+. .+++|+||||+...
T Consensus 192 gtT~~~~~~~~~--~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 192 GTTLDLIEIPLD--DGHSLYDTPGIINS 217 (360)
T ss_pred CeEeeEEEEEeC--CCCEEEECCCCCCh
Confidence 999999887663 34789999999875
No 24
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.85 E-value=1.9e-20 Score=179.43 Aligned_cols=167 Identities=21% Similarity=0.287 Sum_probs=126.8
Q ss_pred HHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC-CEEEEec
Q 022351 33 AAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC-PSFGVNS 111 (298)
Q Consensus 33 ~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~-~vi~iSa 111 (298)
.....++...+..+|+|++|+|++.+....+..+..+++..++|+++|+||+|+...+.. ..+++ ..++ +++++||
T Consensus 66 ~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~--~~~~~-~lg~~~~~~vSa 142 (429)
T TIGR03594 66 KQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV--AAEFY-SLGFGEPIPISA 142 (429)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc--HHHHH-hcCCCCeEEEeC
Confidence 445566778899999999999999888777777777766678999999999999764421 22333 4565 7999999
Q ss_pred CCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeee
Q 022351 112 HNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDI 191 (298)
Q Consensus 112 ~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~ 191 (298)
.++.|++++++.+.+.+++.... .......++++++|.||+|||||+|+|++ .....+++.||||++.
T Consensus 143 ~~g~gv~~ll~~i~~~l~~~~~~-~~~~~~~~~v~ivG~~~~GKSsLin~l~~-----------~~~~~~~~~~gtt~~~ 210 (429)
T TIGR03594 143 EHGRGIGDLLDAILELLPEEEEE-EEEEDGPIKIAIIGRPNVGKSTLVNALLG-----------EERVIVSDIAGTTRDS 210 (429)
T ss_pred CcCCChHHHHHHHHHhcCccccc-ccccCCceEEEEECCCCCCHHHHHHHHHC-----------CCeeecCCCCCceECc
Confidence 99999999999998776541110 11123458999999999999999999993 4456788999999987
Q ss_pred EEEEE-ccCCCEEEEeCCCCCCCC
Q 022351 192 YSLKI-ASHPNIYVLDTPGILPPE 214 (298)
Q Consensus 192 ~~~~~-~~~~~~~liDTPGi~~~~ 214 (298)
....+ ..+..+.++||||+....
T Consensus 211 ~~~~~~~~~~~~~liDT~G~~~~~ 234 (429)
T TIGR03594 211 IDIPFERNGKKYLLIDTAGIRRKG 234 (429)
T ss_pred EeEEEEECCcEEEEEECCCccccc
Confidence 64433 234468999999987643
No 25
>PRK01889 GTPase RsgA; Reviewed
Probab=99.85 E-value=2e-21 Score=181.51 Aligned_cols=151 Identities=22% Similarity=0.226 Sum_probs=100.0
Q ss_pred cCCCCeEEEEEeCCCCCCcccHHHhcc---CCCCCCcEEEEEecCCCCChh-hHHHHHHHHHccCCCEEEEecCCCcCHH
Q 022351 43 MPLVDIILEVRDARIPFSSEFDQLRNH---HPFSSSRRILVLNKMDLASPT-QFKEWITFFDQQNCPSFGVNSHNKDNVK 118 (298)
Q Consensus 43 l~~aDlVl~VvDa~~p~~~~~~~l~~~---l~~~~k~~IiVlNK~DL~~~~-~~~~~~~~~~~~~~~vi~iSa~~~~gi~ 118 (298)
+.++|.+++|+++..++... .+.++ +...+.+++||+||+||++.. ....++..+ ..+++++++|++++.|++
T Consensus 110 aANvD~vliV~s~~p~~~~~--~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~-~~g~~Vi~vSa~~g~gl~ 186 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLR--RIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL-APGVPVLAVSALDGEGLD 186 (356)
T ss_pred EEeCCEEEEEEecCCCCChh--HHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh-CCCCcEEEEECCCCccHH
Confidence 68999999999986333321 22222 223678999999999998752 222333334 567899999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceee-cCCCCeeeeeEEEEEc
Q 022351 119 EFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATV-SPQPGETKDIYSLKIA 197 (298)
Q Consensus 119 ~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~-~~~pg~T~~~~~~~~~ 197 (298)
+|..++. .+-+++++|.||+|||||+|+|++..... .+..... .....+|+..+.+.+.
T Consensus 187 ~L~~~L~---------------~g~~~~lvG~sgvGKStLin~L~g~~~~~-----~G~i~~~~~~g~~tt~~~~l~~l~ 246 (356)
T PRK01889 187 VLAAWLS---------------GGKTVALLGSSGVGKSTLVNALLGEEVQK-----TGAVREDDSKGRHTTTHRELHPLP 246 (356)
T ss_pred HHHHHhh---------------cCCEEEEECCCCccHHHHHHHHHHhcccc-----eeeEEECCCCCcchhhhccEEEec
Confidence 9888873 23478999999999999999998522110 0000000 0111244444444443
Q ss_pred cCCCEEEEeCCCCCCCCCCCh
Q 022351 198 SHPNIYVLDTPGILPPEIHDV 218 (298)
Q Consensus 198 ~~~~~~liDTPGi~~~~~~~~ 218 (298)
. +.+++||||+..+.+.+.
T Consensus 247 ~--~~~l~DtpG~~~~~l~~~ 265 (356)
T PRK01889 247 S--GGLLIDTPGMRELQLWDA 265 (356)
T ss_pred C--CCeecCCCchhhhcccCc
Confidence 3 358999999988777654
No 26
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=1.9e-20 Score=181.55 Aligned_cols=163 Identities=23% Similarity=0.226 Sum_probs=119.2
Q ss_pred HHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC-CEEEEecCC
Q 022351 35 ATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC-PSFGVNSHN 113 (298)
Q Consensus 35 ~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~-~vi~iSa~~ 113 (298)
...++..++..+|+||+|+|++.+.+..+..+..++...++|+++|+||+|+..... ...+.+ ..++ ..+++||++
T Consensus 107 ~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~--~~~~~~-~~g~~~~~~iSA~~ 183 (472)
T PRK03003 107 VAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA--DAAALW-SLGLGEPHPVSALH 183 (472)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch--hhHHHH-hcCCCCeEEEEcCC
Confidence 445566789999999999999987766566666665557899999999999864321 122233 3343 467999999
Q ss_pred CcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE
Q 022351 114 KDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS 193 (298)
Q Consensus 114 ~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~ 193 (298)
+.|+++|++.+.+.+.+..+. ........+|+++|.||||||||+|+|++ .....+++.||+|++...
T Consensus 184 g~gi~eL~~~i~~~l~~~~~~-~~~~~~~~kI~iiG~~nvGKSSLin~l~~-----------~~~~~~s~~~gtT~d~~~ 251 (472)
T PRK03003 184 GRGVGDLLDAVLAALPEVPRV-GSASGGPRRVALVGKPNVGKSSLLNKLAG-----------EERSVVDDVAGTTVDPVD 251 (472)
T ss_pred CCCcHHHHHHHHhhccccccc-ccccccceEEEEECCCCCCHHHHHHHHhC-----------CCcccccCCCCccCCcce
Confidence 999999999998777541111 01123468999999999999999999983 345568899999998764
Q ss_pred EEE-ccCCCEEEEeCCCCCC
Q 022351 194 LKI-ASHPNIYVLDTPGILP 212 (298)
Q Consensus 194 ~~~-~~~~~~~liDTPGi~~ 212 (298)
..+ ..+..+.|+||||+..
T Consensus 252 ~~~~~~~~~~~l~DTaG~~~ 271 (472)
T PRK03003 252 SLIELGGKTWRFVDTAGLRR 271 (472)
T ss_pred EEEEECCEEEEEEECCCccc
Confidence 322 2344688999999864
No 27
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.84 E-value=6.9e-22 Score=163.48 Aligned_cols=141 Identities=23% Similarity=0.391 Sum_probs=100.5
Q ss_pred HHHHHHHHccCCCEEEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhh-----hcc
Q 022351 93 KEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQ-----IGR 167 (298)
Q Consensus 93 ~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~-----~~~ 167 (298)
++|.+.|++.+++++.+|+++++|+++|.+.+.. -+++++|.+|||||||||+|+. ++.
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~----------------k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~ 65 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKG----------------KTSVLLGQSGVGKSSLINALLPEAKQKTGE 65 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT----------------SEEEEECSTTSSHHHHHHHHHTSS----S-
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC----------------CEEEEECCCCCCHHHHHHHHHhhcchhhhh
Confidence 5678889899999999999999999999988742 3789999999999999999984 233
Q ss_pred hhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCCChHHHHHHHHHH
Q 022351 168 ITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGI 247 (298)
Q Consensus 168 ~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~~l~~ 247 (298)
++... ++++| ||+..+.+.+.. +.+|||||||..+++.. +++++++.+|.++
T Consensus 66 is~~~-~rGkH--------TTt~~~l~~l~~--g~~iIDTPGf~~~~l~~-----------------~~~~~l~~~F~e~ 117 (161)
T PF03193_consen 66 ISEKT-GRGKH--------TTTHRELFPLPD--GGYIIDTPGFRSFGLWH-----------------IDPEELAQYFPEF 117 (161)
T ss_dssp ----------------------SEEEEEETT--SEEEECSHHHHT--GCC-----------------S-HHHHHHCSGGG
T ss_pred hhccc-CCCcc--------cCCCeeEEecCC--CcEEEECCCCCcccccc-----------------CCHHHHHHHHHHh
Confidence 33221 22333 466666666633 58999999999988875 4577888888877
Q ss_pred Hcc--CCchhHHHhhcccCCCcccccccccCC
Q 022351 248 LNF--SDEYKKWAKFSINQINKPLTLHHKADQ 277 (298)
Q Consensus 248 l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (298)
-.. ...|++|.|.++|+|+|++.++...-.
T Consensus 118 ~~~~~~CkF~~C~H~~Ep~CaV~~av~~g~i~ 149 (161)
T PF03193_consen 118 RPLAGQCKFRDCTHIHEPGCAVKAAVENGEIS 149 (161)
T ss_dssp HHHTTHSSSTTTTSSSSTT-HHHHHHHTTSS-
T ss_pred ccccCCCCccCCCCCCCCCChHHHHHHCCCCc
Confidence 664 468899999999999999999865443
No 28
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=5.5e-20 Score=176.62 Aligned_cols=163 Identities=21% Similarity=0.310 Sum_probs=121.0
Q ss_pred HHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC-CEEEEecCCC
Q 022351 36 TRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC-PSFGVNSHNK 114 (298)
Q Consensus 36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~-~vi~iSa~~~ 114 (298)
..+...++..+|++|+|+|++.+.+..+..+..++...++|+++|+||+|+...+ ....+++ ..++ +++++||.++
T Consensus 71 ~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~--~~~~~~~-~lg~~~~~~iSa~~g 147 (435)
T PRK00093 71 REQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE--ADAYEFY-SLGLGEPYPISAEHG 147 (435)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch--hhHHHHH-hcCCCCCEEEEeeCC
Confidence 3445567899999999999998877766666666655689999999999976532 2223333 4555 5899999999
Q ss_pred cCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEE
Q 022351 115 DNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194 (298)
Q Consensus 115 ~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~ 194 (298)
.|++++++.+......... .......++++++|.||+|||||+|+|++ .....+++.||+|++....
T Consensus 148 ~gv~~l~~~I~~~~~~~~~--~~~~~~~~~v~ivG~~n~GKStlin~ll~-----------~~~~~~~~~~gtt~~~~~~ 214 (435)
T PRK00093 148 RGIGDLLDAILEELPEEEE--EDEEDEPIKIAIIGRPNVGKSSLINALLG-----------EERVIVSDIAGTTRDSIDT 214 (435)
T ss_pred CCHHHHHHHHHhhCCcccc--ccccccceEEEEECCCCCCHHHHHHHHhC-----------CCceeecCCCCceEEEEEE
Confidence 9999999988763322100 01123578999999999999999999993 4567789999999987754
Q ss_pred EE-ccCCCEEEEeCCCCCCCC
Q 022351 195 KI-ASHPNIYVLDTPGILPPE 214 (298)
Q Consensus 195 ~~-~~~~~~~liDTPGi~~~~ 214 (298)
.+ ..+..+.++||||+....
T Consensus 215 ~~~~~~~~~~lvDT~G~~~~~ 235 (435)
T PRK00093 215 PFERDGQKYTLIDTAGIRRKG 235 (435)
T ss_pred EEEECCeeEEEEECCCCCCCc
Confidence 33 244468999999997654
No 29
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.82 E-value=1.8e-19 Score=182.52 Aligned_cols=165 Identities=21% Similarity=0.283 Sum_probs=121.9
Q ss_pred HHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC-CEEEEecCC
Q 022351 35 ATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC-PSFGVNSHN 113 (298)
Q Consensus 35 ~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~-~vi~iSa~~ 113 (298)
..+++..++..+|++|+|+|++.++...+..+..++...++|+++|+||+|+..... ...+++ ..+. ..+++||++
T Consensus 344 ~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~~ 420 (712)
T PRK09518 344 IASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY--DAAEFW-KLGLGEPYPISAMH 420 (712)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh--hHHHHH-HcCCCCeEEEECCC
Confidence 456667789999999999999987777766676666567899999999999865321 122333 2333 568999999
Q ss_pred CcCHHHHHHHHHHHHHhhhhc-cCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE
Q 022351 114 KDNVKEFLKFLQAHVRNLRKS-DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY 192 (298)
Q Consensus 114 ~~gi~~L~~~l~~~i~~~~~~-~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~ 192 (298)
+.|+++|++.+.+.++..... .+.......+|+++|.||||||||+|+|++ .....+++.||||++..
T Consensus 421 g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~-----------~~~~~v~~~~gtT~d~~ 489 (712)
T PRK09518 421 GRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTH-----------EERAVVNDLAGTTRDPV 489 (712)
T ss_pred CCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhC-----------ccccccCCCCCCCcCcc
Confidence 999999999998877541110 001123457999999999999999999983 44566789999999876
Q ss_pred EEEE-ccCCCEEEEeCCCCCCC
Q 022351 193 SLKI-ASHPNIYVLDTPGILPP 213 (298)
Q Consensus 193 ~~~~-~~~~~~~liDTPGi~~~ 213 (298)
...+ ..+..+.++||||+...
T Consensus 490 ~~~~~~~~~~~~liDTaG~~~~ 511 (712)
T PRK09518 490 DEIVEIDGEDWLFIDTAGIKRR 511 (712)
T ss_pred eeEEEECCCEEEEEECCCcccC
Confidence 4322 23446889999998753
No 30
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.53 E-value=1.1e-14 Score=136.69 Aligned_cols=93 Identities=29% Similarity=0.348 Sum_probs=71.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCCCCCCh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPPEIHDV 218 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~~~~~~ 218 (298)
..+++++++|.||||||||+|+|+ +..++.|++.||||||+....+. ++-++.|+||.|+++..-.-+
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~-----------~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE 283 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALL-----------GRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVE 283 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHh-----------cCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHH
Confidence 568999999999999999999999 36789999999999999854332 344699999999998655444
Q ss_pred hhhhhhhhhcccccCCCChHHHHHHHHHHHccCC
Q 022351 219 EVCSKLALTGAIGDSFVGGKELAQYFLGILNFSD 252 (298)
Q Consensus 219 ~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~~~~ 252 (298)
..++.-|.. ..+-||.+|+++|.+.
T Consensus 284 ~iGIeRs~~---------~i~~ADlvL~v~D~~~ 308 (454)
T COG0486 284 RIGIERAKK---------AIEEADLVLFVLDASQ 308 (454)
T ss_pred HHHHHHHHH---------HHHhCCEEEEEEeCCC
Confidence 445444443 3445667777777766
No 31
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.46 E-value=1.2e-13 Score=114.20 Aligned_cols=64 Identities=30% Similarity=0.428 Sum_probs=46.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCCCCCCh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPPEIHDV 218 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~~~~~~ 218 (298)
++|+++|.||||||||+|+|++ ....++++||+|.+.....+. .+..+.++||||+........
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg------------~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ 65 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTG------------AKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSE 65 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHT------------TSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSH
T ss_pred CEEEEECCCCCCHHHHHHHHHC------------CCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCc
Confidence 4799999999999999999993 347899999999988754333 334699999999987654443
No 32
>COG1159 Era GTPase [General function prediction only]
Probab=99.46 E-value=1.3e-13 Score=123.09 Aligned_cols=68 Identities=35% Similarity=0.512 Sum_probs=56.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE-EEEEccCCCEEEEeCCCCCCCCCCChh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY-SLKIASHPNIYVLDTPGILPPEIHDVE 219 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~-~~~~~~~~~~~liDTPGi~~~~~~~~~ 219 (298)
+...|+++|.||||||||+|+|+ +.+.+.+|+.|.|||+.. ++......++.++|||||..|...-.+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~-----------G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~ 73 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALV-----------GQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGE 73 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHh-----------cCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHH
Confidence 34678999999999999999999 478999999999999866 455556668999999999998554333
No 33
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.44 E-value=9.1e-14 Score=125.16 Aligned_cols=70 Identities=34% Similarity=0.476 Sum_probs=56.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCCCCCCh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPPEIHDV 218 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~~~~~~ 218 (298)
....++++.|+||||||||+++|. .....+.++|+||+.+..-++. ....+++|||||+.+-.+.+.
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT------------~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~Er 233 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLT------------TAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEER 233 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHh------------cCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHh
Confidence 356799999999999999999998 3457899999999998854443 344799999999999776655
Q ss_pred hhh
Q 022351 219 EVC 221 (298)
Q Consensus 219 ~~~ 221 (298)
+..
T Consensus 234 N~I 236 (346)
T COG1084 234 NEI 236 (346)
T ss_pred cHH
Confidence 443
No 34
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.42 E-value=9.2e-13 Score=111.68 Aligned_cols=66 Identities=29% Similarity=0.423 Sum_probs=56.0
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHD 217 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~~ 217 (298)
.....|+++|+||||||||||+|++ ....+.+|..||.|+.+..+.+.+. +.++|.||+..-..+.
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~----------~k~LArtSktPGrTq~iNff~~~~~--~~lVDlPGYGyAkv~k 87 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTN----------QKNLARTSKTPGRTQLINFFEVDDE--LRLVDLPGYGYAKVPK 87 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhC----------CcceeecCCCCCccceeEEEEecCc--EEEEeCCCcccccCCH
Confidence 4566899999999999999999993 3456999999999999999877643 8999999998866554
No 35
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.4e-12 Score=122.78 Aligned_cols=64 Identities=33% Similarity=0.540 Sum_probs=55.1
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILPPE 214 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~~ 214 (298)
..++.|+++|.||||||||+|+|. +..++.||+.||||||.....+ .++.+++|+||.|+++..
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~-----------~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~ 330 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALS-----------REDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREES 330 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHh-----------cCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccccc
Confidence 567999999999999999999998 4788999999999999885444 345579999999999933
No 36
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.31 E-value=1e-12 Score=123.30 Aligned_cols=60 Identities=37% Similarity=0.452 Sum_probs=50.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCCCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILPPE 214 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~~~ 214 (298)
..|++||.||||||||+|+|. +.+.+.|+++||+|||... ..+. +..+.+|||+|+....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~-----------g~r~AIV~D~pGvTRDr~y~~~~~~-~~~f~lIDTgGl~~~~ 65 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLT-----------GRRIAIVSDTPGVTRDRIYGDAEWL-GREFILIDTGGLDDGD 65 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHh-----------CCeeeEeecCCCCccCCccceeEEc-CceEEEEECCCCCcCC
Confidence 379999999999999999999 4788999999999999874 3333 3459999999998644
No 37
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.30 E-value=4.9e-12 Score=99.28 Aligned_cols=61 Identities=39% Similarity=0.530 Sum_probs=48.1
Q ss_pred EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILPPEI 215 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~~~ 215 (298)
+|+++|.||+|||||+|+|++ .+...++..|++|+......+ .....+.++||||+.....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~-----------~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~ 62 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG-----------KKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGES 62 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT-----------STSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSH
T ss_pred CEEEECCCCCCHHHHHHHHhc-----------cccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccch
Confidence 589999999999999999993 446789999999999854222 2333578999999987644
No 38
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.19 E-value=4.8e-11 Score=107.71 Aligned_cols=60 Identities=35% Similarity=0.557 Sum_probs=48.6
Q ss_pred EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE-EEEEccCCCEEEEeCCCCCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY-SLKIASHPNIYVLDTPGILPPE 214 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~-~~~~~~~~~~~liDTPGi~~~~ 214 (298)
+|+++|.||||||||+|+|++ .+.+.+++.|+||++.. .+......++.++||||+..+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~-----------~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~ 62 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHG-----------QKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK 62 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhC-----------CcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc
Confidence 689999999999999999993 56678999999999865 3333344568999999998763
No 39
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.15 E-value=7.9e-12 Score=112.45 Aligned_cols=117 Identities=21% Similarity=0.230 Sum_probs=85.9
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE-EEEEccCCCEEEEeCCCCCCCCCCChhh
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY-SLKIASHPNIYVLDTPGILPPEIHDVEV 220 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~-~~~~~~~~~~~liDTPGi~~~~~~~~~~ 220 (298)
..++++||+||||||||+|.|. +....++.+|+||..+. .+....+-+++|+|+|||....-....+
T Consensus 63 da~v~lVGfPsvGKStLL~~LT------------nt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~gr 130 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLT------------NTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGR 130 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHh------------CCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCC
Confidence 4699999999999999999998 34567889999998876 3434455679999999999865444322
Q ss_pred hhhhhhhcccccCCCChHHHHHHHHHHHccCCchhHHHhhcccCCCcccccccccCCCCC
Q 022351 221 CSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQINKPLTLHHKADQSSG 280 (298)
Q Consensus 221 ~~~la~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (298)
+. .+++..+-||.++.+++......+++.+-.+-.++.-+|.++++.-.+
T Consensus 131 G~----------~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I 180 (365)
T COG1163 131 GR----------QVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTI 180 (365)
T ss_pred cc----------eeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEE
Confidence 21 245667778888777777766666767666666666777777766543
No 40
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.15 E-value=9e-11 Score=100.81 Aligned_cols=63 Identities=22% Similarity=0.307 Sum_probs=46.4
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeec-CCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCCCCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVS-PQPGETKDIYSLKI-ASHPNIYVLDTPGILPPEIH 216 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~-~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~~~~ 216 (298)
++|+++|.||||||||+|+|++ .+...++ ..+|+|+.++.... ..+..+.||||||+..+...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg-----------~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~ 65 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILG-----------REVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVS 65 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhC-----------CCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCC
Confidence 3799999999999999999994 2222222 36688888775432 24557999999999987543
No 41
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.14 E-value=1.2e-10 Score=103.92 Aligned_cols=64 Identities=30% Similarity=0.410 Sum_probs=50.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILPPE 214 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~~ 214 (298)
...++|+++|.+|||||||+|+|++ .....++..+++|+..+.+.. ..+..+.+|||||+.+..
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg-----------~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~ 93 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFG-----------ERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESV 93 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhC-----------CCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcch
Confidence 5678999999999999999999993 445667777778887775543 344569999999998764
No 42
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.11 E-value=2.2e-10 Score=97.68 Aligned_cols=103 Identities=19% Similarity=0.147 Sum_probs=76.0
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh---hHHHHHHHH-Hc
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT---QFKEWITFF-DQ 101 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~---~~~~~~~~~-~~ 101 (298)
-.-||| ..+.+.+...+..+|++|+|+|+..++.....+....+...+.|+++++||+|+.... ..+++.+.+ +.
T Consensus 75 iDtPG~-~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~ 153 (188)
T PF00009_consen 75 IDTPGH-EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKE 153 (188)
T ss_dssp EEESSS-HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHH
T ss_pred cccccc-cceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhccc
Confidence 345899 4588888889999999999999998877766655555445789999999999998322 122333222 21
Q ss_pred c------CCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 102 Q------NCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 102 ~------~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
. ..+++++||.++.|+++|++.|.+++|
T Consensus 154 ~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 154 YGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 1 247999999999999999999987764
No 43
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.10 E-value=1.1e-10 Score=110.39 Aligned_cols=59 Identities=27% Similarity=0.354 Sum_probs=47.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE--ccCCCEEEEeCCCCCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI--ASHPNIYVLDTPGILPPE 214 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~--~~~~~~~liDTPGi~~~~ 214 (298)
.|++||.||||||||+|+|.+ . ...++++|+||+......+ .....+.++||||+..+.
T Consensus 161 dValVG~PNaGKSTLln~Lt~-----------~-k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a 221 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSA-----------A-KPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGA 221 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhC-----------C-cccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccc
Confidence 799999999999999999982 2 3588999999999875333 333359999999998754
No 44
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.09 E-value=1.5e-10 Score=103.40 Aligned_cols=65 Identities=26% Similarity=0.470 Sum_probs=53.9
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE-EEEEccCCCEEEEeCCCCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY-SLKIASHPNIYVLDTPGILPPEI 215 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~-~~~~~~~~~~~liDTPGi~~~~~ 215 (298)
.+.+.|+++|.||||||||+|.|. +.+.+.+|..+.|||.-. .+......++.++||||++.++.
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mi-----------g~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~ 135 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMI-----------GQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKM 135 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhh-----------CCccccccccccceeeeeeEEEecCceEEEEecCCcccccch
Confidence 456899999999999999999999 367888999999887755 44445566899999999998753
No 45
>PTZ00258 GTP-binding protein; Provisional
Probab=99.04 E-value=3.4e-10 Score=106.57 Aligned_cols=63 Identities=22% Similarity=0.378 Sum_probs=49.5
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccC----------------CC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASH----------------PN 201 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~----------------~~ 201 (298)
...++|++||.||||||||+|+|. +....++++||||+++.. +.+.+. .+
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt------------~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aq 86 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALC------------KQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQ 86 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHh------------cCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCC
Confidence 456899999999999999999997 234689999999988764 222221 24
Q ss_pred EEEEeCCCCCCCC
Q 022351 202 IYVLDTPGILPPE 214 (298)
Q Consensus 202 ~~liDTPGi~~~~ 214 (298)
+.++||||+....
T Consensus 87 i~lvDtpGLv~ga 99 (390)
T PTZ00258 87 LDITDIAGLVKGA 99 (390)
T ss_pred eEEEECCCcCcCC
Confidence 8999999998643
No 46
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.04 E-value=7.8e-10 Score=103.44 Aligned_cols=60 Identities=32% Similarity=0.368 Sum_probs=47.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~ 212 (298)
...+|+++|.||||||||+|+|.+ ....+++.||+|+++.. +.+.++..+.++||||+..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~------------~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~ 249 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTG------------ADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIR 249 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC------------CceeeccCCccccCCEEEEEEeCCCceEEEEecCcccc
Confidence 458999999999999999999982 23567888999998874 3343455799999999843
No 47
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.01 E-value=1.1e-09 Score=105.83 Aligned_cols=63 Identities=33% Similarity=0.480 Sum_probs=50.1
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPP 213 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~ 213 (298)
..+++|+++|.||||||||+|+|++ ...+.+++.||+|++.....+. .+..+.++||||+..+
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~-----------~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~ 276 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLG-----------EERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRET 276 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhC-----------CCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCC
Confidence 3568999999999999999999983 4456788999999987643332 3446899999999753
No 48
>PRK00089 era GTPase Era; Reviewed
Probab=99.01 E-value=7.6e-10 Score=100.88 Aligned_cols=62 Identities=37% Similarity=0.569 Sum_probs=49.5
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE-EEEccCCCEEEEeCCCCCCCC
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYVLDTPGILPPE 214 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~~~~liDTPGi~~~~ 214 (298)
...|+++|.||||||||+|+|+ +.+.+.+++.|+||+.... +....+.++.++||||+..+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~-----------g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~ 67 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALV-----------GQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK 67 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHh-----------CCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch
Confidence 4579999999999999999998 3567788999999987653 322333579999999998765
No 49
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.01 E-value=1.2e-09 Score=105.15 Aligned_cols=63 Identities=37% Similarity=0.469 Sum_probs=50.6
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPP 213 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~ 213 (298)
..+++|+++|.||||||||+|+|++ ...+.+++.||||++.....+. ++..+.++||||+...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~-----------~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~ 264 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLK-----------QDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREH 264 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhC-----------CCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccc
Confidence 4678999999999999999999993 4456788999999997753332 3346889999999764
No 50
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.99 E-value=5.2e-10 Score=100.88 Aligned_cols=58 Identities=28% Similarity=0.409 Sum_probs=44.7
Q ss_pred EEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCC----------------CEEEEe
Q 022351 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHP----------------NIYVLD 206 (298)
Q Consensus 145 i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~----------------~~~liD 206 (298)
+++||.||||||||+|+|.+ ....++++||||+++.. +.+...+ .+.++|
T Consensus 1 igivG~PN~GKSTLfn~Lt~------------~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD 68 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTK------------AGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVD 68 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhC------------CCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEE
Confidence 47999999999999999983 23478999999988763 3333221 389999
Q ss_pred CCCCCCCC
Q 022351 207 TPGILPPE 214 (298)
Q Consensus 207 TPGi~~~~ 214 (298)
|||+....
T Consensus 69 ~pGl~~~a 76 (274)
T cd01900 69 IAGLVKGA 76 (274)
T ss_pred CCCcCCCC
Confidence 99998643
No 51
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.98 E-value=1.9e-09 Score=91.03 Aligned_cols=64 Identities=30% Similarity=0.443 Sum_probs=50.9
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEI 215 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~ 215 (298)
....+|+++|.+|+|||||+|+|++ ......+++.+|+|+++..+... .++.++||||+.....
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~----------~~~~~~~~~~~~~t~~~~~~~~~--~~~~liDtpG~~~~~~ 79 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTN----------RKKLARTSKTPGRTQLINFFEVN--DGFRLVDLPGYGYAKV 79 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhC----------CCCcccccCCCCcceEEEEEEeC--CcEEEEeCCCCccccC
Confidence 4567999999999999999999983 22356678899999988766553 3699999999876543
No 52
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.98 E-value=1.5e-09 Score=98.92 Aligned_cols=65 Identities=28% Similarity=0.370 Sum_probs=47.7
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEE-EccCCCEEEEeCCCCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLK-IASHPNIYVLDTPGILPPEI 215 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~-~~~~~~~~liDTPGi~~~~~ 215 (298)
...++|+++|.+||||||++|+|++ .+.+.++..+++|.....+. ...+..+.+|||||+.+...
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG-----------~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~ 101 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIG-----------ERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGY 101 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhC-----------CCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHH
Confidence 4678999999999999999999993 44555666666655443221 23455799999999998643
No 53
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.98 E-value=7.7e-10 Score=102.74 Aligned_cols=59 Identities=24% Similarity=0.388 Sum_probs=47.6
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEE--EEccCCCEEEEeCCCCCCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL--KIASHPNIYVLDTPGILPP 213 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~--~~~~~~~~~liDTPGi~~~ 213 (298)
..|++||.||||||||+|+|.. ....++++|+||+.+... .+.....+.++||||+...
T Consensus 159 adVglVG~PNaGKSTLln~ls~------------a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~g 219 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSA------------AKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEG 219 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHc------------CCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCC
Confidence 3799999999999999999982 235689999999998743 3334456999999999764
No 54
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.98 E-value=8.1e-10 Score=102.94 Aligned_cols=59 Identities=27% Similarity=0.390 Sum_probs=46.8
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccC----------------CCEEE
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASH----------------PNIYV 204 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~----------------~~~~l 204 (298)
+++++||.||||||||+|+|.+ . .+.++++||||+++.. +.+... ..+.+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~-----------~-~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~l 70 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTK-----------A-GAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEF 70 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhC-----------C-CCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEE
Confidence 5899999999999999999982 2 3788999999988763 333321 14899
Q ss_pred EeCCCCCCC
Q 022351 205 LDTPGILPP 213 (298)
Q Consensus 205 iDTPGi~~~ 213 (298)
+||||+...
T Consensus 71 vD~pGL~~~ 79 (364)
T PRK09601 71 VDIAGLVKG 79 (364)
T ss_pred EECCCCCCC
Confidence 999999864
No 55
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.95 E-value=3.8e-09 Score=92.80 Aligned_cols=100 Identities=15% Similarity=0.107 Sum_probs=74.6
Q ss_pred ccchhhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHH----HH
Q 022351 26 GWYGPHMAAATRAIADRMP--LVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWIT----FF 99 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~--~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~----~~ 99 (298)
...||| .+..+.+...+. .+|++++|+|+..++...+..+..++...++|+++|+||+|+.+........+ .+
T Consensus 89 iDtpG~-~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L 167 (224)
T cd04165 89 IDLAGH-ERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETLKDLKRIL 167 (224)
T ss_pred EECCCc-HHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHHHHHHHh
Confidence 455898 566676666664 79999999999988777766666665557899999999999987654443333 33
Q ss_pred Hc--------------------------cCCCEEEEecCCCcCHHHHHHHHHH
Q 022351 100 DQ--------------------------QNCPSFGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 100 ~~--------------------------~~~~vi~iSa~~~~gi~~L~~~l~~ 126 (298)
.. ...+++.+||.+|+|+++|.++|..
T Consensus 168 ~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 168 KVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred cCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 21 0127899999999999999988864
No 56
>PRK15494 era GTPase Era; Provisional
Probab=98.95 E-value=2e-09 Score=100.31 Aligned_cols=63 Identities=33% Similarity=0.541 Sum_probs=49.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEE-EccCCCEEEEeCCCCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLK-IASHPNIYVLDTPGILPPE 214 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~-~~~~~~~~liDTPGi~~~~ 214 (298)
...+|+++|.||||||||+|+|++ .+.+.+++.|+||++..... ...+.++.++||||+..+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~-----------~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~ 114 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIG-----------EKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 114 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhC-----------CceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCc
Confidence 456899999999999999999983 55677889999998865322 2234478999999997643
No 57
>COG1159 Era GTPase [General function prediction only]
Probab=98.94 E-value=8.6e-09 Score=92.36 Aligned_cols=95 Identities=22% Similarity=0.299 Sum_probs=78.6
Q ss_pred HHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhh-HHHHHHHHHcc-C-CCEEEEecC
Q 022351 36 TRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ-FKEWITFFDQQ-N-CPSFGVNSH 112 (298)
Q Consensus 36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~-~~~~~~~~~~~-~-~~vi~iSa~ 112 (298)
.+.++..+..+|+|++|+|+..++...+..+.+.++..+.|+++++||+|...++. +....+++... . ..++++||+
T Consensus 76 ~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~ 155 (298)
T COG1159 76 NKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISAL 155 (298)
T ss_pred HHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecc
Confidence 35677889999999999999998888888877776655689999999999998766 45666666432 2 279999999
Q ss_pred CCcCHHHHHHHHHHHHHh
Q 022351 113 NKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 113 ~~~gi~~L~~~l~~~i~~ 130 (298)
++.+++.|++.+..++++
T Consensus 156 ~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 156 KGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred ccCCHHHHHHHHHHhCCC
Confidence 999999999999988765
No 58
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.94 E-value=2.9e-09 Score=90.69 Aligned_cols=63 Identities=30% Similarity=0.441 Sum_probs=50.0
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPE 214 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~ 214 (298)
....+|+++|.+|||||||+|+|++ ....+.+++.+|+|+.+..+.+ ..++.|+||||+....
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~----------~~~~~~~~~~~~~t~~~~~~~~--~~~l~l~DtpG~~~~~ 84 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTN----------RKNLARTSKTPGRTQLINFFEV--NDKLRLVDLPGYGYAK 84 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhC----------CCCcccccCCCCceeEEEEEec--CCeEEEeCCCCCCCcC
Confidence 4567999999999999999999983 2225677888999998876554 3469999999986543
No 59
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.93 E-value=3.7e-09 Score=103.81 Aligned_cols=63 Identities=33% Similarity=0.415 Sum_probs=50.8
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCCCCCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILPPEIHD 217 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~~~~~ 217 (298)
.+++++|.||||||||+|+|. +.+..++++||+|.+...-.. ..+..+.++|.||+.+.....
T Consensus 4 ~~valvGNPNvGKTtlFN~LT------------G~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S 67 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALT------------GANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYS 67 (653)
T ss_pred ceEEEecCCCccHHHHHHHHh------------ccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCC
Confidence 469999999999999999998 456889999999988764332 334469999999998865443
No 60
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.93 E-value=1.5e-09 Score=101.22 Aligned_cols=88 Identities=19% Similarity=0.328 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE
Q 022351 117 VKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI 196 (298)
Q Consensus 117 i~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~ 196 (298)
+.+....|++.+.... ...++|+|+|.+|+|||||||+|++.+.- ....+.++. ..||.....|..
T Consensus 17 ~~~~~s~i~~~l~~~~-------~~~l~IaV~G~sGsGKSSfINalrGl~~~------d~~aA~tGv-~etT~~~~~Y~~ 82 (376)
T PF05049_consen 17 LQEVVSKIREALKDID-------NAPLNIAVTGESGSGKSSFINALRGLGHE------DEGAAPTGV-VETTMEPTPYPH 82 (376)
T ss_dssp HHHHHHHHHHHHHHHH-------H--EEEEEEESTTSSHHHHHHHHTT--TT------STTS--SSS-HSCCTS-EEEE-
T ss_pred HHHHHHHHHHHHHHhh-------cCceEEEEECCCCCCHHHHHHHHhCCCCC------CcCcCCCCC-CcCCCCCeeCCC
Confidence 4555556665555432 35689999999999999999999976431 122333333 246777778877
Q ss_pred ccCCCEEEEeCCCCCCCCCCCh
Q 022351 197 ASHPNIYVLDTPGILPPEIHDV 218 (298)
Q Consensus 197 ~~~~~~~liDTPGi~~~~~~~~ 218 (298)
...+++.++|.||+..+.++..
T Consensus 83 p~~pnv~lWDlPG~gt~~f~~~ 104 (376)
T PF05049_consen 83 PKFPNVTLWDLPGIGTPNFPPE 104 (376)
T ss_dssp SS-TTEEEEEE--GGGSS--HH
T ss_pred CCCCCCeEEeCCCCCCCCCCHH
Confidence 7778999999999998876543
No 61
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.91 E-value=2.1e-09 Score=102.62 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=46.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE--ccCCCEEEEeCCCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI--ASHPNIYVLDTPGILP 212 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~--~~~~~~~liDTPGi~~ 212 (298)
.|++||.||||||||||+|.+ ....++++|+||+.+....+ .....+.++||||+..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~------------ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGlie 218 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSN------------AKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIE 218 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHc------------CCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcc
Confidence 799999999999999999982 33568899999999875333 3245799999999975
No 62
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.91 E-value=8e-09 Score=84.90 Aligned_cols=100 Identities=17% Similarity=0.184 Sum_probs=67.7
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCC-CCCcEEEEEecCCCCChhh----HHHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPF-SSSRRILVLNKMDLASPTQ----FKEWITFFD 100 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~-~~k~~IiVlNK~DL~~~~~----~~~~~~~~~ 100 (298)
-|...++.+....+...+..+|++++|+|++.+...........+.. ..+|+++|+||+|+.+... .+++.+.+.
T Consensus 55 ~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~ 134 (164)
T cd04171 55 FIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLA 134 (164)
T ss_pred EEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHH
Confidence 35544446677777788999999999999986433322221111111 2359999999999986532 233344443
Q ss_pred c---cCCCEEEEecCCCcCHHHHHHHHH
Q 022351 101 Q---QNCPSFGVNSHNKDNVKEFLKFLQ 125 (298)
Q Consensus 101 ~---~~~~vi~iSa~~~~gi~~L~~~l~ 125 (298)
. .+.+++++||+++.|++++++.+.
T Consensus 135 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 162 (164)
T cd04171 135 GTFLADAPIFPVSAVTGEGIEELKEYLD 162 (164)
T ss_pred hcCcCCCcEEEEeCCCCcCHHHHHHHHh
Confidence 3 356899999999999999988875
No 63
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.91 E-value=3.4e-09 Score=86.31 Aligned_cols=62 Identities=37% Similarity=0.526 Sum_probs=47.5
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCCC
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPPE 214 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~~ 214 (298)
+++|+++|.+|+|||||+|+|.+ ...+.+++.|++|++.....+. .+..+.++||||+....
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~ 63 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAG-----------RDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETE 63 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHC-----------CceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCc
Confidence 35899999999999999999983 3455677889999887643322 23368899999987643
No 64
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.91 E-value=2.9e-09 Score=104.66 Aligned_cols=65 Identities=26% Similarity=0.302 Sum_probs=47.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecC-CCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSP-QPGETKDIYSLKIASHPNIYVLDTPGILPPEIH 216 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~-~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~ 216 (298)
..++|+++|.|||||||++|+|++ .+...++. .|+||+.........+..+.||||||+......
T Consensus 117 fslrIvLVGKTGVGKSSLINSILG-----------ekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~d 182 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFG-----------EVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASD 182 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhc-----------cccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccc
Confidence 457999999999999999999993 33444444 467776433333334567999999999987543
No 65
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.90 E-value=2.4e-08 Score=82.92 Aligned_cols=94 Identities=22% Similarity=0.293 Sum_probs=68.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccC--CCEEEEec
Q 022351 34 AATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQN--CPSFGVNS 111 (298)
Q Consensus 34 ~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~--~~vi~iSa 111 (298)
+..+.+...+..+|++++|+|+..+.+.....+... ..++|+++++||+|+... ..+.+.+.+...+ .+++++||
T Consensus 53 ~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~~~~p~~~~Sa 129 (158)
T PRK15467 53 RWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDA-DVAATRKLLLETGFEEPIFELNS 129 (158)
T ss_pred HHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcc-cHHHHHHHHHHcCCCCCEEEEEC
Confidence 455666677899999999999987755444444443 246899999999998643 2333444444444 48999999
Q ss_pred CCCcCHHHHHHHHHHHHHh
Q 022351 112 HNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 112 ~~~~gi~~L~~~l~~~i~~ 130 (298)
++++|+++|++.+.+.+..
T Consensus 130 ~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 130 HDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred CCccCHHHHHHHHHHhchh
Confidence 9999999999999876643
No 66
>PRK04213 GTP-binding protein; Provisional
Probab=98.89 E-value=3.5e-09 Score=90.91 Aligned_cols=57 Identities=26% Similarity=0.397 Sum_probs=45.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~ 212 (298)
...+|+++|.+|||||||+|+|.+ . ...++..||+|++...+... ++.++||||+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~-----------~-~~~~~~~~~~t~~~~~~~~~---~~~l~Dt~G~~~ 64 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTG-----------K-KVRVGKRPGVTRKPNHYDWG---DFILTDLPGFGF 64 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC-----------C-CCccCCCCceeeCceEEeec---ceEEEeCCcccc
Confidence 457999999999999999999982 2 24577889999887655433 589999999754
No 67
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.89 E-value=2e-08 Score=81.86 Aligned_cols=88 Identities=17% Similarity=0.160 Sum_probs=67.1
Q ss_pred HHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC-CEEEEecCCCc
Q 022351 37 RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC-PSFGVNSHNKD 115 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~-~vi~iSa~~~~ 115 (298)
+.....+..+|++++|+|++.+....+..+..++...+.|+++|+||+|+.+.... ...+...+. +++.+|++++.
T Consensus 68 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~ 144 (157)
T cd01894 68 EQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPIPISAEHGR 144 (157)
T ss_pred HHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH---HHHHHhcCCCCeEEEecccCC
Confidence 34556788899999999998877666666655554567999999999999876543 222334454 78999999999
Q ss_pred CHHHHHHHHHHH
Q 022351 116 NVKEFLKFLQAH 127 (298)
Q Consensus 116 gi~~L~~~l~~~ 127 (298)
|++++++++.+.
T Consensus 145 gv~~l~~~l~~~ 156 (157)
T cd01894 145 GIGDLLDAILEL 156 (157)
T ss_pred CHHHHHHHHHhh
Confidence 999999988653
No 68
>PRK11058 GTPase HflX; Provisional
Probab=98.89 E-value=3.9e-09 Score=101.06 Aligned_cols=58 Identities=31% Similarity=0.316 Sum_probs=45.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~ 212 (298)
.+|+++|.||||||||+|+|.+ .+. .+++.||+|++... +.+.....+.++||||+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~-----------~~~-~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r 257 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITE-----------ARV-YAADQLFATLDPTLRRIDVADVGETVLADTVGFIR 257 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------Cce-eeccCCCCCcCCceEEEEeCCCCeEEEEecCcccc
Confidence 5899999999999999999982 233 37889999988764 3344434688999999844
No 69
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.88 E-value=9.3e-09 Score=87.83 Aligned_cols=101 Identities=22% Similarity=0.224 Sum_probs=69.6
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhH----HHHHHHHH---
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQF----KEWITFFD--- 100 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~----~~~~~~~~--- 100 (298)
.||| ....+.+...+..+|.+++|+|++.+..........+....++|+++|+||+|+...... +++.+.+.
T Consensus 75 tpG~-~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~ 153 (192)
T cd01889 75 CPGH-ASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTL 153 (192)
T ss_pred CCCc-HHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHH
Confidence 3566 456677777788899999999998765433322111212246899999999999854322 22222221
Q ss_pred ----ccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 101 ----QQNCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 101 ----~~~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
..+++++++||+++.|+++|++++..+++
T Consensus 154 ~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 154 EKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 23568999999999999999999987764
No 70
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.88 E-value=2.3e-09 Score=93.37 Aligned_cols=66 Identities=27% Similarity=0.375 Sum_probs=41.6
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEE-EccCCCEEEEeCCCCCCCCCCCh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLK-IASHPNIYVLDTPGILPPEIHDV 218 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~-~~~~~~~~liDTPGi~~~~~~~~ 218 (298)
++|+++|.+|+||||++|+|++ ...........++|+.++... ...+..+.||||||+.++...+.
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg----------~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~ 67 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILG----------KEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDE 67 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT----------SS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc----------ccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHH
Confidence 4799999999999999999994 222222223445666666433 23456799999999988776544
No 71
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.88 E-value=2.5e-09 Score=103.49 Aligned_cols=59 Identities=27% Similarity=0.394 Sum_probs=46.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPP 213 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~ 213 (298)
..|++||.||||||||||+|.. ....++++|+||+.+....+. .+..++|+||||+...
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~------------akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGlieg 219 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSA------------AKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPG 219 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhc------------CCccccccCcccccceEEEEEECCeEEEEEECCCCccc
Confidence 4899999999999999999982 245679999999987743332 2336899999999753
No 72
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.87 E-value=3.1e-09 Score=98.60 Aligned_cols=59 Identities=24% Similarity=0.407 Sum_probs=47.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILPP 213 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~~ 213 (298)
..|++||.||||||||+|+|.+ ....++++|+||+.+.. +.+.+...+.|+||||+.+.
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~------------~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~ 218 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSA------------AKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEG 218 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhc------------CCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccC
Confidence 4789999999999999999982 23568999999988774 33333357999999999764
No 73
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.86 E-value=7.4e-09 Score=86.82 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=67.5
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhh---HHHHHHHHHccC
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ---FKEWITFFDQQN 103 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~---~~~~~~~~~~~~ 103 (298)
|...++.+....+...+..+|++|+|+|++.+...........+...++|+++|+||+|+.+... .+++.+.+ ...
T Consensus 72 ~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~-~~~ 150 (179)
T cd01890 72 IDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVL-GLD 150 (179)
T ss_pred EECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHh-CCC
Confidence 54333356677777889999999999999876544332221111135789999999999864321 12222222 111
Q ss_pred -CCEEEEecCCCcCHHHHHHHHHHHH
Q 022351 104 -CPSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 104 -~~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
.+++.+||+++.|+++|++++.+.+
T Consensus 151 ~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 151 PSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred cccEEEeeccCCCCHHHHHHHHHhhC
Confidence 2489999999999999999987553
No 74
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.86 E-value=3.3e-09 Score=88.07 Aligned_cols=57 Identities=26% Similarity=0.440 Sum_probs=42.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~ 212 (298)
+|+++|.+|||||||+|+|.+ ....++..|++|++... +......++.++||||+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~------------~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 60 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISN------------AKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIE 60 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhc------------CCccccCCCccccCCcceEEEcCCCCeEEEEecCcccC
Confidence 589999999999999999983 22357778888876553 2222223689999999864
No 75
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.86 E-value=1.5e-08 Score=87.52 Aligned_cols=101 Identities=20% Similarity=0.259 Sum_probs=69.7
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-Ccc-cHHHhccCCCCCCcEEEEEecCCCCChhhHHH----HHHHHHc
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPF-SSE-FDQLRNHHPFSSSRRILVLNKMDLASPTQFKE----WITFFDQ 101 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~-~~~-~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~----~~~~~~~ 101 (298)
-||| .+....+...+..+|++++|+|+..+. ... ...+..+.....+|+++|+||+|+.+...... ..+.+..
T Consensus 90 tPG~-~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~ 168 (203)
T cd01888 90 CPGH-EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQIKKFVKG 168 (203)
T ss_pred CCCh-HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHHHHHHHHhc
Confidence 3666 667888888899999999999998752 222 22232221112357899999999987543322 2222322
Q ss_pred ---cCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 102 ---QNCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 102 ---~~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
.+.+++++||++++|+++|++++.+.++
T Consensus 169 ~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 169 TIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred cccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 2467999999999999999999987654
No 76
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.83 E-value=8.3e-10 Score=99.23 Aligned_cols=100 Identities=22% Similarity=0.252 Sum_probs=66.3
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCCCCCCChhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILPPEIHDVEV 220 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~~~~~~~~~ 220 (298)
..+++||+||+|||||+|+|.+ ....++.+++||..+.. +...+..++.+-|.|||+.-.- .+.
T Consensus 197 advGLVG~PNAGKSTLL~als~------------AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh--~nk 262 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSR------------AKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAH--MNK 262 (366)
T ss_pred cccceecCCCCcHHHHHHHhhc------------cCCcccccceeeeccccceeeccccceeEeccCcccccccc--ccC
Confidence 3789999999999999999983 33589999999988763 3334455699999999988543 334
Q ss_pred hhhhhhhcccccCCCChHHHHHHHHHHHccCCc-----hhHHHhhcccC
Q 022351 221 CSKLALTGAIGDSFVGGKELAQYFLGILNFSDE-----YKKWAKFSINQ 264 (298)
Q Consensus 221 ~~~la~~~~i~~~~~~~~~~~~~~l~~l~~~~~-----~~~~~~~~~~~ 264 (298)
+++..+... .+.++.+++++|.+.. ...|..|..+-
T Consensus 263 GlG~~FLrH--------iER~~~l~fVvD~s~~~~~~p~~~~~lL~~EL 303 (366)
T KOG1489|consen 263 GLGYKFLRH--------IERCKGLLFVVDLSGKQLRNPWQQLQLLIEEL 303 (366)
T ss_pred cccHHHHHH--------HHhhceEEEEEECCCcccCCHHHHHHHHHHHH
Confidence 444444433 3345555555555433 34444444443
No 77
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.83 E-value=2.6e-09 Score=101.00 Aligned_cols=93 Identities=28% Similarity=0.348 Sum_probs=65.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCCCCCCh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPPEIHDV 218 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~~~~~~ 218 (298)
...-+++++|+|||||||++|.+. .....+.++|+||+.+-.-++. .--..+++|||||....+.+.
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vt------------radvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdr 233 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVT------------RADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDR 233 (620)
T ss_pred CCcCeEEEecCCCCCcHhhccccc------------ccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhh
Confidence 345689999999999999999997 2346788999999886532221 111478999999999888877
Q ss_pred hhhhhhhhhcccccCCCChHHHHHHHHHHHccCC
Q 022351 219 EVCSKLALTGAIGDSFVGGKELAQYFLGILNFSD 252 (298)
Q Consensus 219 ~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~~~~ 252 (298)
+....++++. -..+...+||+++.++
T Consensus 234 N~IEmqsITA--------LAHLraaVLYfmDLSe 259 (620)
T KOG1490|consen 234 NIIEMQIITA--------LAHLRSAVLYFMDLSE 259 (620)
T ss_pred hHHHHHHHHH--------HHHhhhhheeeeechh
Confidence 6655555442 2344455667776654
No 78
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.82 E-value=4.6e-08 Score=78.97 Aligned_cols=87 Identities=18% Similarity=0.233 Sum_probs=62.1
Q ss_pred HHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh-hHHHHHHHHHccCC-CEEEEecCC
Q 022351 36 TRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT-QFKEWITFFDQQNC-PSFGVNSHN 113 (298)
Q Consensus 36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~-~~~~~~~~~~~~~~-~vi~iSa~~ 113 (298)
.+.+...+.++|++++|+|+..+.+..+..+... ..+|+++|+||+|+.+.. ..+...++++..+. +++.+||++
T Consensus 53 ~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 129 (142)
T TIGR02528 53 YSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVD 129 (142)
T ss_pred HHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCC
Confidence 4444456899999999999998876655544443 246999999999997532 22222333334444 789999999
Q ss_pred CcCHHHHHHHHH
Q 022351 114 KDNVKEFLKFLQ 125 (298)
Q Consensus 114 ~~gi~~L~~~l~ 125 (298)
+.|++++++++.
T Consensus 130 ~~gi~~l~~~l~ 141 (142)
T TIGR02528 130 EQGLEALVDYLN 141 (142)
T ss_pred CCCHHHHHHHHh
Confidence 999999988763
No 79
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.82 E-value=4.1e-08 Score=79.77 Aligned_cols=86 Identities=19% Similarity=0.250 Sum_probs=70.3
Q ss_pred HHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCC-ChhhHHHHHHHHHccCC-CEEEEecCCC
Q 022351 37 RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLA-SPTQFKEWITFFDQQNC-PSFGVNSHNK 114 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~-~~~~~~~~~~~~~~~~~-~vi~iSa~~~ 114 (298)
+.+.....+||+|++|.|+..+.....+.+... .++|+|-|+||+|+. +.+.++...+.++..|. ++|.+|+.++
T Consensus 55 ~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~---f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~ 131 (143)
T PF10662_consen 55 HALIVTAQDADVVLLLQDATEPRSVFPPGFASM---FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTG 131 (143)
T ss_pred HHHHHHHhhCCEEEEEecCCCCCccCCchhhcc---cCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCC
Confidence 334455668999999999999888888877765 579999999999998 45566666667766676 6899999999
Q ss_pred cCHHHHHHHHH
Q 022351 115 DNVKEFLKFLQ 125 (298)
Q Consensus 115 ~gi~~L~~~l~ 125 (298)
+|+++|.++|.
T Consensus 132 eGi~eL~~~L~ 142 (143)
T PF10662_consen 132 EGIEELKDYLE 142 (143)
T ss_pred cCHHHHHHHHh
Confidence 99999999885
No 80
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.81 E-value=2.3e-08 Score=90.22 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=69.2
Q ss_pred HHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH-ccCC-CEEEEecCC
Q 022351 36 TRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD-QQNC-PSFGVNSHN 113 (298)
Q Consensus 36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~-~~~~-~vi~iSa~~ 113 (298)
.+.+...+..+|++++|+|++.+.... ..+...+...++|+++|+||+|+.+..........+. ..++ +++++||++
T Consensus 70 ~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~ 148 (270)
T TIGR00436 70 MKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALT 148 (270)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCC
Confidence 345667889999999999998764433 4444444446799999999999986554444443332 2233 789999999
Q ss_pred CcCHHHHHHHHHHHHHh
Q 022351 114 KDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 114 ~~gi~~L~~~l~~~i~~ 130 (298)
+.|+++|++.+.+.+++
T Consensus 149 g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 149 GDNTSFLAAFIEVHLPE 165 (270)
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 99999999999887654
No 81
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.80 E-value=1e-09 Score=95.75 Aligned_cols=116 Identities=19% Similarity=0.234 Sum_probs=84.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE-EEEccCCCEEEEeCCCCCCCCCCChh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYVLDTPGILPPEIHDVE 219 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~~~~liDTPGi~~~~~~~~~ 219 (298)
...+++++|+|.||||||+..|.. .+...+.+.+||..... +.-.++-+++++|.|||.+..-....
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~------------T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkG 128 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITS------------THSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKG 128 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhc------------chhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCC
Confidence 346999999999999999999983 34555666667766552 32345567999999999986544433
Q ss_pred hhhhhhhhcccccCCCChHHHHHHHHHHHccCCchhHHHhhcccCCCcccccccccCCC
Q 022351 220 VCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQINKPLTLHHKADQS 278 (298)
Q Consensus 220 ~~~~la~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (298)
++ ..++...+-||++|.+|+......+-..+..+-.+|.-.|.++.++.
T Consensus 129 RG----------RQviavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pni 177 (364)
T KOG1486|consen 129 RG----------RQVIAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNI 177 (364)
T ss_pred CC----------ceEEEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCe
Confidence 22 22456677788899999888766656667777777778888888885
No 82
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.80 E-value=9.2e-09 Score=85.26 Aligned_cols=57 Identities=39% Similarity=0.606 Sum_probs=42.2
Q ss_pred EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILP 212 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~ 212 (298)
+|+++|.+|||||||+|+|.+ ....+++.|++|+++...... ...++.++||||+..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 59 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTR------------AKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLD 59 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhc------------CCCccCCCCCcccceeEEEEccCceEEEEEECCCcCC
Confidence 689999999999999999983 123356678888776643222 233689999999854
No 83
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.80 E-value=1.8e-09 Score=98.02 Aligned_cols=59 Identities=25% Similarity=0.408 Sum_probs=49.3
Q ss_pred EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccCCCEEEEeCCCCCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASHPNIYVLDTPGILPPE 214 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~~~~~liDTPGi~~~~ 214 (298)
.|++||+||+|||||||++. .-...++++|+||..+. .+.+.....+.+-|.||+++-.
T Consensus 161 DVGLVG~PNaGKSTlls~vS------------~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGA 221 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVS------------AAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGA 221 (369)
T ss_pred ccccccCCCCcHHHHHHHHh------------hcCCcccCCccccccCcccEEEecCCCcEEEecCccccccc
Confidence 68899999999999999997 34578999999998877 3555555569999999999854
No 84
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.78 E-value=5e-08 Score=91.33 Aligned_cols=96 Identities=20% Similarity=0.222 Sum_probs=67.5
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH----HHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHcc
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD----QLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQ 102 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~----~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~ 102 (298)
..|.++.+..+...+.+.++|+|++|+|++.|...... .+...+...++|+++|+||+|+.+...+.. +...
T Consensus 250 ~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~----~~~~ 325 (351)
T TIGR03156 250 DLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIER----LEEG 325 (351)
T ss_pred cCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHH----HHhC
Confidence 34656556667777789999999999999987543321 122222224789999999999976543322 1122
Q ss_pred CCCEEEEecCCCcCHHHHHHHHHH
Q 022351 103 NCPSFGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 103 ~~~vi~iSa~~~~gi~~L~~~l~~ 126 (298)
..+++++||+++.|+++|++.|.+
T Consensus 326 ~~~~i~iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 326 YPEAVFVSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred CCCEEEEEccCCCCHHHHHHHHHh
Confidence 246899999999999999998864
No 85
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.77 E-value=2.1e-08 Score=81.99 Aligned_cols=63 Identities=37% Similarity=0.517 Sum_probs=45.2
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCCCC
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILPPEI 215 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~~~ 215 (298)
..+|+++|.+|+|||||+|+|++ .+.+.+++.+++|+....... .....+.++||||+..+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 66 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVG-----------QKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKK 66 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhC-----------CceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchH
Confidence 35899999999999999999983 344555666677766543322 2234588999999876543
No 86
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.77 E-value=2.2e-08 Score=86.18 Aligned_cols=60 Identities=30% Similarity=0.350 Sum_probs=42.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~ 212 (298)
...+|+++|.+|||||||+|+|.+ ....+...+++|.+... +.+.+...+.++||||+..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~ 101 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTG------------ADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIR 101 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhc------------chhccCCccceeccceeEEEEecCCceEEEeCCCcccc
Confidence 347999999999999999999983 12234455566655443 3333333689999999865
No 87
>PRK00089 era GTPase Era; Reviewed
Probab=98.76 E-value=8.9e-08 Score=87.28 Aligned_cols=95 Identities=21% Similarity=0.234 Sum_probs=73.1
Q ss_pred HHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCC-ChhhHHHHHHHHHc-c-CCCEEEEecC
Q 022351 36 TRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLA-SPTQFKEWITFFDQ-Q-NCPSFGVNSH 112 (298)
Q Consensus 36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~-~~~~~~~~~~~~~~-~-~~~vi~iSa~ 112 (298)
.+.+...+..+|++++|+|+..++......+...+...++|+++|+||+|+. +........+.+.. . ..+++++||+
T Consensus 75 ~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~ 154 (292)
T PRK00089 75 NKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISAL 154 (292)
T ss_pred HHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCC
Confidence 3455677899999999999988666666666665544578999999999998 44555555555543 2 2478999999
Q ss_pred CCcCHHHHHHHHHHHHHh
Q 022351 113 NKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 113 ~~~gi~~L~~~l~~~i~~ 130 (298)
++.|+++|++.+.+.+++
T Consensus 155 ~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 155 KGDNVDELLDVIAKYLPE 172 (292)
T ss_pred CCCCHHHHHHHHHHhCCC
Confidence 999999999999887654
No 88
>COG2262 HflX GTPases [General function prediction only]
Probab=98.76 E-value=1.2e-07 Score=88.41 Aligned_cols=118 Identities=17% Similarity=0.101 Sum_probs=84.4
Q ss_pred CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH----HHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351 25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD----QLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD 100 (298)
Q Consensus 25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~----~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~ 100 (298)
+.-.|.++-.+++...+.+..+|++++|+|+++|...... .+..-+....+|.|+|+||+|++++......+...
T Consensus 251 I~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~- 329 (411)
T COG2262 251 IRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERG- 329 (411)
T ss_pred cccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhc-
Confidence 5777999999999999999999999999999998332211 12222223568999999999998766422222222
Q ss_pred ccCCCEEEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCc
Q 022351 101 QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVG 154 (298)
Q Consensus 101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvG 154 (298)
.. ..+++||+++.|++.|++.|...+... .......+.....|
T Consensus 330 -~~-~~v~iSA~~~~gl~~L~~~i~~~l~~~---------~~~~~l~lp~~~~~ 372 (411)
T COG2262 330 -SP-NPVFISAKTGEGLDLLRERIIELLSGL---------RTEVTLELPYTDAG 372 (411)
T ss_pred -CC-CeEEEEeccCcCHHHHHHHHHHHhhhc---------ccceEEEcCccccc
Confidence 12 589999999999999999999887752 12233455666666
No 89
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.75 E-value=4.1e-08 Score=97.64 Aligned_cols=115 Identities=17% Similarity=0.069 Sum_probs=80.3
Q ss_pred cceecccCC----CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCc-EEEEEecCCCCChh
Q 022351 16 GTAVSQKKG----GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMDLASPT 90 (298)
Q Consensus 16 g~~~~~~~~----~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~-~IiVlNK~DL~~~~ 90 (298)
|+..+..++ .-..||| .++.+.+...+..+|++++|+|+..+......+...++...+.| +++|+||+|+.+.+
T Consensus 41 ~~~~~~~~~~~v~~iDtPGh-e~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~ 119 (581)
T TIGR00475 41 GFAYFPLPDYRLGFIDVPGH-EKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEE 119 (581)
T ss_pred EEEEEEeCCEEEEEEECCCH-HHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHH
Confidence 444555554 2334777 77888888999999999999999986544333322232235677 99999999998765
Q ss_pred hHHH----HHHHHHcc----CCCEEEEecCCCcCHHHHHHHHHHHHHhh
Q 022351 91 QFKE----WITFFDQQ----NCPSFGVNSHNKDNVKEFLKFLQAHVRNL 131 (298)
Q Consensus 91 ~~~~----~~~~~~~~----~~~vi~iSa~~~~gi~~L~~~l~~~i~~~ 131 (298)
..+. ..+.+... +.+++++||+++.|++++.+.+...+...
T Consensus 120 ~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 120 EIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESL 168 (581)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhC
Confidence 3322 22222222 46899999999999999999998877654
No 90
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.75 E-value=2e-08 Score=82.85 Aligned_cols=61 Identities=31% Similarity=0.462 Sum_probs=45.7
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCC
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILPP 213 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~ 213 (298)
.++|+++|.+|+|||||+|+|++ .....++..|++|+......+ ..+..+.++||||+...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~ 63 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLG-----------EERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRK 63 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhC-----------ccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccc
Confidence 46899999999999999999983 334556677888877653222 23445889999998765
No 91
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.75 E-value=1.4e-08 Score=82.71 Aligned_cols=57 Identities=39% Similarity=0.518 Sum_probs=42.9
Q ss_pred EEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCC
Q 022351 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPP 213 (298)
Q Consensus 146 ~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~ 213 (298)
+++|.+|||||||+|+|.+ .....++..|++|++....... .+..+.++||||+...
T Consensus 1 ~l~G~~~~GKssl~~~l~~-----------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~ 58 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTG-----------RRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPD 58 (157)
T ss_pred CccCCCCCCHHHHHHHHhC-----------CcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCc
Confidence 4799999999999999983 3445667888999876643322 2346889999999764
No 92
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.75 E-value=8.2e-09 Score=91.45 Aligned_cols=68 Identities=31% Similarity=0.321 Sum_probs=48.0
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEE-EEccCCCEEEEeCCCCCCCCCCCh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL-KIASHPNIYVLDTPGILPPEIHDV 218 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~-~~~~~~~~~liDTPGi~~~~~~~~ 218 (298)
..++++.++|.+|+|||||||+|++ +....++..+-+|...... .-..+..+.|.||||+.+..-.|.
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~-----------~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~ 105 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQ-----------GEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDA 105 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHh-----------ccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhH
Confidence 5678999999999999999999994 3345555555444333221 112345799999999998766663
No 93
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.74 E-value=2.2e-08 Score=86.16 Aligned_cols=67 Identities=22% Similarity=0.305 Sum_probs=42.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIH 216 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~ 216 (298)
++|+++|.+|||||||+|+|++..... .....++ ...+|+....+.....+++.++||||+......
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~------~~~~~~~-~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~ 68 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEE------EGAAPTG-VVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFP 68 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCC------CCccccC-ccccccCceeeecCCCCCceEEeCCCCCcccCC
Confidence 589999999999999999998522100 0011111 222454444443333457899999999875443
No 94
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.74 E-value=4.9e-08 Score=84.78 Aligned_cols=87 Identities=20% Similarity=0.321 Sum_probs=53.5
Q ss_pred cCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeee-eeEE
Q 022351 115 DNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETK-DIYS 193 (298)
Q Consensus 115 ~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~-~~~~ 193 (298)
-|++.+++.+....-. ..-.++||+||.+|.|||||+|+|+....... .......-+.|.||- ....
T Consensus 27 vGidtI~~Qm~~k~mk--------~GF~FNIMVVgqSglgkstlinTlf~s~v~~~----s~~~~~~~p~pkT~eik~~t 94 (336)
T KOG1547|consen 27 VGIDTIIEQMRKKTMK--------TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDS----SSSDNSAEPIPKTTEIKSIT 94 (336)
T ss_pred ccHHHHHHHHHHHHHh--------ccCceEEEEEecCCCCchhhHHHHHHHHHhhc----cCCCcccCcccceEEEEeee
Confidence 4788888877654432 24568999999999999999999985332211 111122225555542 1111
Q ss_pred EEEccCC---CEEEEeCCCCCCC
Q 022351 194 LKIASHP---NIYVLDTPGILPP 213 (298)
Q Consensus 194 ~~~~~~~---~~~liDTPGi~~~ 213 (298)
..+..++ ++.+|||||+.+.
T Consensus 95 hvieE~gVklkltviDTPGfGDq 117 (336)
T KOG1547|consen 95 HVIEEKGVKLKLTVIDTPGFGDQ 117 (336)
T ss_pred eeeeecceEEEEEEecCCCcccc
Confidence 1122111 4889999999874
No 95
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.74 E-value=3.5e-08 Score=83.00 Aligned_cols=100 Identities=15% Similarity=0.120 Sum_probs=70.7
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHH----HHHHHHHc--
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFK----EWITFFDQ-- 101 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~----~~~~~~~~-- 101 (298)
.||+ ..........+..+|.+++|+|+..+.......+...+...++|+++|+||+|+..++... ...+.++.
T Consensus 69 tpG~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (189)
T cd00881 69 TPGH-EDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIG 147 (189)
T ss_pred CCCc-HHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHcccc
Confidence 3555 3455556677889999999999988765554444444334689999999999998643322 22223322
Q ss_pred ------------cCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351 102 ------------QNCPSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 102 ------------~~~~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
...+++++||+++.|++++++++.+.+
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 148 FISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred ccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 245789999999999999999987654
No 96
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.73 E-value=5.1e-08 Score=94.10 Aligned_cols=104 Identities=15% Similarity=0.166 Sum_probs=72.8
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCC-CCccc-HHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHH----H
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIP-FSSEF-DQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITF----F 99 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p-~~~~~-~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~----~ 99 (298)
..-||| +++.+.+...+..+|.+++|+|+..+ ..... +.+.......-+++|+|+||+|+.+.+..++..+. +
T Consensus 122 IDtPGH-~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l 200 (460)
T PTZ00327 122 VDCPGH-DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYEEIRNFV 200 (460)
T ss_pred eeCCCH-HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHHHHHHHH
Confidence 445898 67889999999999999999999874 33322 22221111133568899999999875543332222 2
Q ss_pred Hc---cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 100 DQ---QNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 100 ~~---~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.. ...+++++||.++.|++.|++.|.+.++.
T Consensus 201 ~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 201 KGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred HhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 21 34689999999999999999999876543
No 97
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.73 E-value=1.9e-08 Score=95.45 Aligned_cols=60 Identities=27% Similarity=0.398 Sum_probs=44.8
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEc--------------------c--
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIA--------------------S-- 198 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~--------------------~-- 198 (298)
++|++||.||||||||+|+|.+ ....++++|++|+++.. ..+. .
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~------------~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~ 69 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATL------------ADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGT 69 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhC------------CcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCc
Confidence 4799999999999999999983 23567899999987763 1210 0
Q ss_pred -CCCEEEEeCCCCCCCC
Q 022351 199 -HPNIYVLDTPGILPPE 214 (298)
Q Consensus 199 -~~~~~liDTPGi~~~~ 214 (298)
.-++.++||||+....
T Consensus 70 ~~~~i~i~D~aGl~~ga 86 (396)
T PRK09602 70 RFIPVELIDVAGLVPGA 86 (396)
T ss_pred ceeeEEEEEcCCcCCCc
Confidence 1247899999997643
No 98
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.72 E-value=1.8e-07 Score=80.52 Aligned_cols=91 Identities=21% Similarity=0.252 Sum_probs=64.0
Q ss_pred HHHHHHHHhcCCCCeEEEEEeCCCCCCcccH----HHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEE
Q 022351 34 AATRAIADRMPLVDIILEVRDARIPFSSEFD----QLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGV 109 (298)
Q Consensus 34 ~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~----~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~i 109 (298)
+....+...+..+|++++|+|++.+...... .+...+...++|+++|+||+|+.+..... ..+...+.+++.+
T Consensus 109 ~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~~~~~ 185 (204)
T cd01878 109 EAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPDAVFI 185 (204)
T ss_pred HHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCceEEE
Confidence 4444455567889999999999877544321 12222222468999999999998765433 2333445589999
Q ss_pred ecCCCcCHHHHHHHHHHH
Q 022351 110 NSHNKDNVKEFLKFLQAH 127 (298)
Q Consensus 110 Sa~~~~gi~~L~~~l~~~ 127 (298)
||+++.|++++.++|.+.
T Consensus 186 Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 186 SAKTGEGLDELLEAIEEL 203 (204)
T ss_pred EcCCCCCHHHHHHHHHhh
Confidence 999999999999988643
No 99
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.72 E-value=5.2e-08 Score=80.65 Aligned_cols=104 Identities=15% Similarity=0.116 Sum_probs=70.7
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhccCC--CCCCcEEEEEecCCCCChhhHHHHHHHHHcc
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRNHHP--FSSSRRILVLNKMDLASPTQFKEWITFFDQQ 102 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~~l~--~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~ 102 (298)
-|...+..+........+..+|++++|+|+..+.+..+ ..+...+. ..+.|+++|+||+|+.+.. ..+..++....
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~ 131 (161)
T cd04124 53 FWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV-TQKKFNFAEKH 131 (161)
T ss_pred EEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH-HHHHHHHHHHc
Confidence 46654446666666788999999999999987543222 11221111 1368999999999985432 22233333344
Q ss_pred CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 103 NCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 103 ~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+.+++.+||+++.|++++++.+.+.+.+
T Consensus 132 ~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 132 NLPLYYVSAADGTNVVKLFQDAIKLAVS 159 (161)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999998776543
No 100
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.72 E-value=2.4e-08 Score=101.99 Aligned_cols=59 Identities=27% Similarity=0.396 Sum_probs=47.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPP 213 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~ 213 (298)
.+|+++|.||||||||+|+|.+ .+..++++||+|.+.....+. .+..+.++||||+...
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg------------~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl 63 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTG------------ARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSL 63 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhC------------CCCccCCCCCceEeeEEEEEEcCceEEEEEECCCcccc
Confidence 5899999999999999999982 234689999999987643332 3346899999999764
No 101
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.72 E-value=2.3e-08 Score=88.36 Aligned_cols=58 Identities=31% Similarity=0.407 Sum_probs=44.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILPP 213 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~ 213 (298)
+++++|.||+|||||+|+|.+ ....++..|++|.++..-.+ ..+..+.++||||+...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg------------~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~ 60 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTN------------TKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHC------------CCccccCCCCccccceEEEEEECCeEEEEEECCCcccc
Confidence 689999999999999999983 23456788999977653222 23446889999998654
No 102
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.71 E-value=9.3e-08 Score=95.58 Aligned_cols=103 Identities=9% Similarity=0.010 Sum_probs=76.2
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCc-EEEEEecCCCCChhhHH----HHHHHHHc
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMDLASPTQFK----EWITFFDQ 101 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~-~IiVlNK~DL~~~~~~~----~~~~~~~~ 101 (298)
.-||| +++.+.+...+..+|++++|+|+..+......+...++...+.| +++|+||+|+.+.+..+ ++.+.+..
T Consensus 57 DtPGh-e~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~ 135 (614)
T PRK10512 57 DVPGH-EKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLRE 135 (614)
T ss_pred ECCCH-HHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence 45788 77888899999999999999999987666554444443334566 57999999998754433 23333333
Q ss_pred cC---CCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 102 QN---CPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 102 ~~---~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+ .+++++||+++.|+++|++.|.+....
T Consensus 136 ~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 136 YGFAEAKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 33 579999999999999999999876543
No 103
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=98.71 E-value=3.2e-08 Score=94.46 Aligned_cols=168 Identities=22% Similarity=0.176 Sum_probs=112.8
Q ss_pred cceecccCCCccchhhHHHHH----------HHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCC
Q 022351 16 GTAVSQKKGGGWYGPHMAAAT----------RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMD 85 (298)
Q Consensus 16 g~~~~~~~~~~wfpghm~~~~----------~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~D 85 (298)
|++.+..-..-||..||.... +...+..++--++..|+|..+.+.+..+.+...+ ..+..++..||+|
T Consensus 71 ~~~~~~~cpgc~~l~~~~~~~~~~v~~~~y~k~~~~~~~~~~~~~~vvd~~d~p~~i~p~~~~~v--~~~~~~v~~n~vd 148 (572)
T KOG1249|consen 71 GFLAAIVCPGCGFLEHMRAALAVPVVPGEYKKEKSEKQENPALARKVVDLSDEPCSIDPLLTNDV--GSPRLFVDGNKVD 148 (572)
T ss_pred cccccccCCcchHHHHhhhhccCccChhhhhhhhhhhhhcccceEEeeecccCccccccchhhcc--cCCceEeeccccc
Confidence 566666667889999986554 3344455565677888887765556666565542 3344799999999
Q ss_pred CCChhhHHHHHHHHH---c-----c----C------C-CEEEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEE
Q 022351 86 LASPTQFKEWITFFD---Q-----Q----N------C-PSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVM 146 (298)
Q Consensus 86 L~~~~~~~~~~~~~~---~-----~----~------~-~vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~ 146 (298)
+.+.+..--....+. . . + + .+..++++++.|+++|+-.|..... ....+.
T Consensus 149 l~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~~~f~~~~~~r~ktgyg~eeLI~~lvd~~d-----------f~Gdf~ 217 (572)
T KOG1249|consen 149 LLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPDFDFDHVDLIRAKTGYGIEELIVMLVDIVD-----------FRGDFY 217 (572)
T ss_pred cccccccchHHHHHHhhcccceeecccccCCCcccchhhhhhhhhhhcccHHHHHHHhhheee-----------ccCcee
Confidence 997654211111111 0 0 1 1 2456788999999999888865432 234688
Q ss_pred EEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE
Q 022351 147 LLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI 196 (298)
Q Consensus 147 vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~ 196 (298)
.+|..||||||++|+|++....+......-.+++++++||||.....+.+
T Consensus 218 lvg~tnvgks~~fn~ll~sD~c~~~~p~lVd~aT~~dwpgTtlsllkfpv 267 (572)
T KOG1249|consen 218 LVGATNVGKSTLFNALLESDLCSVNAPKLVDRATISDWPGTTLSLLKFPV 267 (572)
T ss_pred eeeecccchhhHHHHHhhhccccccccceeeeeecccCCccccchhhCcc
Confidence 99999999999999999765543332223457899999999988765544
No 104
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.70 E-value=7e-08 Score=91.33 Aligned_cols=123 Identities=18% Similarity=0.126 Sum_probs=90.8
Q ss_pred cchhHHHHHhhhcceecccCCCccc--h-----h-----------------h-HHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 022351 4 SSSSLFKLAREIGTAVSQKKGGGWY--G-----P-----------------H-MAAATRAIADRMPLVDIILEVRDARIP 58 (298)
Q Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~wf--p-----g-----------------h-m~~~~~~i~~~l~~aDlVl~VvDa~~p 58 (298)
-||-|-.|.++-=-++.+.+|++-. . + . -.-++++.++.+++||+|++|+|++.|
T Consensus 230 KSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~ 309 (454)
T COG0486 230 KSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQP 309 (454)
T ss_pred HHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCC
Confidence 3666777777777777777773211 0 0 0 034577888899999999999999998
Q ss_pred CCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 59 FSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 59 ~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+..+..+...+ ..++|+++|+||+||.+....... .+ ..+.+++.+|+++++|++.|.+.|.+.+..
T Consensus 310 ~~~~d~~~~~~~-~~~~~~i~v~NK~DL~~~~~~~~~--~~-~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 310 LDKEDLALIELL-PKKKPIIVVLNKADLVSKIELESE--KL-ANGDAIISISAKTGEGLDALREAIKQLFGK 377 (454)
T ss_pred CchhhHHHHHhc-ccCCCEEEEEechhcccccccchh--hc-cCCCceEEEEecCccCHHHHHHHHHHHHhh
Confidence 777777666622 468999999999999876543322 11 234578999999999999999999887754
No 105
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.70 E-value=3.8e-08 Score=86.49 Aligned_cols=69 Identities=23% Similarity=0.242 Sum_probs=49.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc----cCCCEEEEeCCCCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA----SHPNIYVLDTPGILPPEI 215 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~----~~~~~~liDTPGi~~~~~ 215 (298)
.+-..|+++|.+++|||||+|.|++.. .........+.||+.+...... .+..+.++||||+..+..
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~---------~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~ 75 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTL---------SGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRER 75 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCC---------CCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCcccc
Confidence 345688999999999999999999421 1333344557888887643222 234699999999998876
Q ss_pred CC
Q 022351 216 HD 217 (298)
Q Consensus 216 ~~ 217 (298)
..
T Consensus 76 ~~ 77 (224)
T cd01851 76 GE 77 (224)
T ss_pred Cc
Confidence 54
No 106
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.69 E-value=1.6e-08 Score=82.61 Aligned_cols=55 Identities=35% Similarity=0.521 Sum_probs=41.7
Q ss_pred EEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCCCC
Q 022351 147 LLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILPPE 214 (298)
Q Consensus 147 vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~~~ 214 (298)
++|.+|||||||+|++.+ . ...++..||+|++... +.+. +.++.++||||+....
T Consensus 1 l~G~~~~GKssl~~~~~~-----------~-~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~ 57 (158)
T cd01879 1 LVGNPNVGKTTLFNALTG-----------A-RQKVGNWPGVTVEKKEGRFKLG-GKEIEIVDLPGTYSLS 57 (158)
T ss_pred CCCCCCCCHHHHHHHHhc-----------C-cccccCCCCcccccceEEEeeC-CeEEEEEECCCccccC
Confidence 589999999999999983 2 2566778999988753 3333 3468999999987644
No 107
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.69 E-value=6.6e-08 Score=81.37 Aligned_cols=103 Identities=14% Similarity=0.034 Sum_probs=67.6
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc--ccHHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS--EFDQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFD 100 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~--~~~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~ 100 (298)
-|..++..+.......++..+|++|+|+|+..+.+- ....+..++.. .+.|++||.||+||......++..+.+.
T Consensus 61 l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~ 140 (175)
T smart00177 61 VWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLG 140 (175)
T ss_pred EEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhC
Confidence 466666566666667789999999999999875321 12223333221 3579999999999964322222222221
Q ss_pred -----ccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351 101 -----QQNCPSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 101 -----~~~~~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
...+.++.+||++|.|+++++++|.+.+
T Consensus 141 ~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 141 LHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred ccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 1122466899999999999999987653
No 108
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.69 E-value=5.4e-08 Score=81.40 Aligned_cols=99 Identities=14% Similarity=0.020 Sum_probs=64.4
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--cHHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHH-
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE--FDQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFD- 100 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~--~~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~- 100 (298)
|..++..+.......++..+|++++|+|+.++.+-. ...+.+.+.. .+.|+++|.||+|+......++..+.+.
T Consensus 58 ~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~ 137 (168)
T cd04149 58 WDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGL 137 (168)
T ss_pred EECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCC
Confidence 444444555555667889999999999998753221 1223333321 3689999999999864322222223221
Q ss_pred ----ccCCCEEEEecCCCcCHHHHHHHHH
Q 022351 101 ----QQNCPSFGVNSHNKDNVKEFLKFLQ 125 (298)
Q Consensus 101 ----~~~~~vi~iSa~~~~gi~~L~~~l~ 125 (298)
...+.++.+||+++.|+++++++|.
T Consensus 138 ~~~~~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 138 TRIRDRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred CccCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence 1223578999999999999998875
No 109
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.68 E-value=4.2e-08 Score=80.42 Aligned_cols=58 Identities=31% Similarity=0.470 Sum_probs=45.6
Q ss_pred EEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCC
Q 022351 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPE 214 (298)
Q Consensus 145 i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~ 214 (298)
|+++|.+|+|||||+|+|.+ .......++.+++|.....+.... .++++||||+....
T Consensus 2 i~l~G~~g~GKTtL~~~l~~----------~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~D~~g~~~~~ 59 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN----------RKKLARTSKTPGKTQLINFFNVND--KFRLVDLPGYGYAK 59 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc----------CCceeeecCCCCcceeEEEEEccC--eEEEecCCCccccc
Confidence 78999999999999999983 234556778888888776655433 68999999987653
No 110
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.68 E-value=1e-07 Score=80.89 Aligned_cols=104 Identities=13% Similarity=0.027 Sum_probs=69.3
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--cHHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE--FDQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFD 100 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~--~~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~ 100 (298)
-|..+++.+.......++..+|.+|+|+|++++.+-. ...+..++.. .+.|+++|.||+|+......++..+.+.
T Consensus 65 i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~ 144 (181)
T PLN00223 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG 144 (181)
T ss_pred EEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhC
Confidence 3655555666666677899999999999998653221 1223333221 3689999999999865443344444432
Q ss_pred cc-----CCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 101 QQ-----NCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 101 ~~-----~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
-. .+.++.+||++++|+++++++|.+.+.
T Consensus 145 l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 145 LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred ccccCCCceEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 11 123457899999999999999977654
No 111
>PRK15494 era GTPase Era; Provisional
Probab=98.67 E-value=8.4e-08 Score=89.44 Aligned_cols=94 Identities=16% Similarity=0.295 Sum_probs=68.9
Q ss_pred HHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccC--CCEEEEecCC
Q 022351 36 TRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQN--CPSFGVNSHN 113 (298)
Q Consensus 36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~--~~vi~iSa~~ 113 (298)
.+.....+..+|++++|+|+..++...+..+...+...+.|+++|+||+|+.+. ...+..+.+.... ..++++||++
T Consensus 122 ~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~~~~~i~~iSAkt 200 (339)
T PRK15494 122 VRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-YLNDIKAFLTENHPDSLLFPISALS 200 (339)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-cHHHHHHHHHhcCCCcEEEEEeccC
Confidence 344556789999999999998776655544544443456788999999999654 3344445554332 4689999999
Q ss_pred CcCHHHHHHHHHHHHHh
Q 022351 114 KDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 114 ~~gi~~L~~~l~~~i~~ 130 (298)
+.|+++++++|.+.+++
T Consensus 201 g~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 201 GKNIDGLLEYITSKAKI 217 (339)
T ss_pred ccCHHHHHHHHHHhCCC
Confidence 99999999999877654
No 112
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.67 E-value=5.1e-08 Score=81.41 Aligned_cols=105 Identities=12% Similarity=0.077 Sum_probs=68.3
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc--ccHHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS--EFDQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD 100 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~--~~~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~ 100 (298)
-|..++..+....+..++..+|.+++|+|+..+.+- ....+..++. ..+.|+++|.||+|+......++..+++.
T Consensus 47 l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~ 126 (169)
T cd04158 47 IWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLS 126 (169)
T ss_pred EEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhC
Confidence 355554455566666788999999999999875322 1122333322 13579999999999964322333333321
Q ss_pred --cc----CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 101 --QQ----NCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 101 --~~----~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+. .+.++.+||+++.|+++++++|.+.+.+
T Consensus 127 ~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 127 LHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred CccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence 11 1246678999999999999999876554
No 113
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.67 E-value=6e-08 Score=81.18 Aligned_cols=99 Identities=11% Similarity=0.110 Sum_probs=65.6
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH-
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD- 100 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~- 100 (298)
|..++..+........+..+|++++|+|+..+.+..+ ..+..++. ..+.|+++|+||+|+......++..+.+.
T Consensus 63 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~ 142 (173)
T cd04154 63 WDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALEL 142 (173)
T ss_pred EECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCc
Confidence 5444334455556678999999999999987522111 12222221 25789999999999975433333333332
Q ss_pred ----ccCCCEEEEecCCCcCHHHHHHHHH
Q 022351 101 ----QQNCPSFGVNSHNKDNVKEFLKFLQ 125 (298)
Q Consensus 101 ----~~~~~vi~iSa~~~~gi~~L~~~l~ 125 (298)
....+++.+||+++.|++++++++.
T Consensus 143 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 143 DKISSHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred cccCCCceEEEeccCCCCcCHHHHHHHHh
Confidence 2345799999999999999998874
No 114
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.67 E-value=2.4e-08 Score=83.09 Aligned_cols=54 Identities=35% Similarity=0.559 Sum_probs=40.3
Q ss_pred EEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCC
Q 022351 147 LLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 147 vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~ 212 (298)
++|.+|||||||+|+|.+ ... .++..|++|++... +.+..+.++.++||||+..
T Consensus 1 iiG~~~~GKStll~~l~~-----------~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~ 56 (176)
T cd01881 1 LVGLPNVGKSTLLNALTN-----------AKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIE 56 (176)
T ss_pred CCCCCCCcHHHHHHHHhc-----------CCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccch
Confidence 589999999999999983 222 56778888877653 2233255789999999854
No 115
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.66 E-value=7.9e-08 Score=78.96 Aligned_cols=99 Identities=15% Similarity=0.115 Sum_probs=65.0
Q ss_pred ccc-hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--cHHHhccC-----CCCCCcEEEEEecCCCCChhhHHHHHH
Q 022351 26 GWY-GPHMAAATRAIADRMPLVDIILEVRDARIPFSSE--FDQLRNHH-----PFSSSRRILVLNKMDLASPTQFKEWIT 97 (298)
Q Consensus 26 ~wf-pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~--~~~l~~~l-----~~~~k~~IiVlNK~DL~~~~~~~~~~~ 97 (298)
-|. ||+ .+....+...+..+|.+++|+|++++.... ...+..++ ...+.|+++|+||+|+.+.....++.+
T Consensus 49 l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~ 127 (162)
T cd04157 49 AFDMSGQ-GKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQ 127 (162)
T ss_pred EEECCCC-HhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHH
Confidence 344 454 556666677899999999999998754221 11122211 124789999999999976433333333
Q ss_pred HHH-----ccCCCEEEEecCCCcCHHHHHHHHH
Q 022351 98 FFD-----QQNCPSFGVNSHNKDNVKEFLKFLQ 125 (298)
Q Consensus 98 ~~~-----~~~~~vi~iSa~~~~gi~~L~~~l~ 125 (298)
.+. ...++++.+||+++.|+++++++|.
T Consensus 128 ~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 128 LLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 321 1123478899999999999999875
No 116
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.65 E-value=6.8e-08 Score=79.96 Aligned_cols=100 Identities=14% Similarity=0.045 Sum_probs=64.6
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC--cccHHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFS--SEFDQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFD 100 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~--~~~~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~ 100 (298)
-|..+...+.......++..+|++++|+|+..+.+ .....+..++.. .+.|++++.||+|+.+....++..+.+.
T Consensus 48 l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~ 127 (159)
T cd04150 48 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLG 127 (159)
T ss_pred EEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhC
Confidence 46544445666666778999999999999976422 111223333221 3589999999999964322223223321
Q ss_pred -----ccCCCEEEEecCCCcCHHHHHHHHH
Q 022351 101 -----QQNCPSFGVNSHNKDNVKEFLKFLQ 125 (298)
Q Consensus 101 -----~~~~~vi~iSa~~~~gi~~L~~~l~ 125 (298)
.....++.+||++|.|+++++++|.
T Consensus 128 ~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 128 LHSLRNRNWYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred ccccCCCCEEEEEeeCCCCCCHHHHHHHHh
Confidence 1223467899999999999998874
No 117
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.65 E-value=2.2e-07 Score=74.87 Aligned_cols=92 Identities=22% Similarity=0.233 Sum_probs=67.7
Q ss_pred HHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHH-----HHHccCCCEEEEe
Q 022351 36 TRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWIT-----FFDQQNCPSFGVN 110 (298)
Q Consensus 36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~-----~~~~~~~~vi~iS 110 (298)
...+...+..+|++++|+|+..+.......+.......+.|.++|+||+|+........+.. .....+.+++.+|
T Consensus 66 ~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 145 (163)
T cd00880 66 EELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVS 145 (163)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEe
Confidence 35666778899999999999987665555423322246899999999999988765555432 1113356899999
Q ss_pred cCCCcCHHHHHHHHHHH
Q 022351 111 SHNKDNVKEFLKFLQAH 127 (298)
Q Consensus 111 a~~~~gi~~L~~~l~~~ 127 (298)
+.++.|++++++.+...
T Consensus 146 a~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 146 ALTGEGIDELREALIEA 162 (163)
T ss_pred eeccCCHHHHHHHHHhh
Confidence 99999999999988643
No 118
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.64 E-value=3.9e-08 Score=90.70 Aligned_cols=57 Identities=25% Similarity=0.346 Sum_probs=42.8
Q ss_pred EEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEc--------------------cC---
Q 022351 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIA--------------------SH--- 199 (298)
Q Consensus 145 i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~--------------------~~--- 199 (298)
|+++|.||||||||+|+|.+ ....++++|++|+++.. ..+. ++
T Consensus 1 i~ivG~pnvGKStLfn~lt~------------~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 68 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATL------------ADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRY 68 (318)
T ss_pred CEEECCCCCCHHHHHHHHhC------------CCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCc
Confidence 47999999999999999983 33578999999987662 1210 11
Q ss_pred CCEEEEeCCCCCCC
Q 022351 200 PNIYVLDTPGILPP 213 (298)
Q Consensus 200 ~~~~liDTPGi~~~ 213 (298)
-.+.++||||+...
T Consensus 69 v~i~l~D~aGlv~g 82 (318)
T cd01899 69 VPVELIDVAGLVPG 82 (318)
T ss_pred ceEEEEECCCCCCC
Confidence 24889999999753
No 119
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.64 E-value=1e-07 Score=78.37 Aligned_cols=96 Identities=14% Similarity=0.099 Sum_probs=63.4
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--cHHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH---
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSE--FDQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD--- 100 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~--~~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~--- 100 (298)
||+ .+........+..+|++++|+|+..+.... ...+..++. ..++|+++|+||+|+.......+....+.
T Consensus 51 ~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~ 129 (158)
T cd04151 51 GGQ-TSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSE 129 (158)
T ss_pred CCC-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccc
Confidence 554 445555567799999999999998642211 122322222 14789999999999975432233333331
Q ss_pred --ccCCCEEEEecCCCcCHHHHHHHHH
Q 022351 101 --QQNCPSFGVNSHNKDNVKEFLKFLQ 125 (298)
Q Consensus 101 --~~~~~vi~iSa~~~~gi~~L~~~l~ 125 (298)
..+.+++++||+++.|+++++++|.
T Consensus 130 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 130 LKDRTWSIFKTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred cCCCcEEEEEeeccCCCCHHHHHHHHh
Confidence 1224699999999999999998874
No 120
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.64 E-value=2.1e-07 Score=75.95 Aligned_cols=91 Identities=24% Similarity=0.277 Sum_probs=69.4
Q ss_pred HHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCC-ChhhHHHHHHHHHccC--CCEEEEecCC
Q 022351 37 RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLA-SPTQFKEWITFFDQQN--CPSFGVNSHN 113 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~-~~~~~~~~~~~~~~~~--~~vi~iSa~~ 113 (298)
+.....+..+|++++|+|+..+.......+...+...+.|+++|+||+|+. .......+.+.+.... .+++.+|+++
T Consensus 74 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 153 (168)
T cd04163 74 KAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALK 153 (168)
T ss_pred HHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEecc
Confidence 344567899999999999998855555555444433568999999999998 4556666666665433 4789999999
Q ss_pred CcCHHHHHHHHHHH
Q 022351 114 KDNVKEFLKFLQAH 127 (298)
Q Consensus 114 ~~gi~~L~~~l~~~ 127 (298)
+.|++++.+.|.+.
T Consensus 154 ~~~~~~l~~~l~~~ 167 (168)
T cd04163 154 GENVDELLEEIVKY 167 (168)
T ss_pred CCChHHHHHHHHhh
Confidence 99999999988653
No 121
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.64 E-value=8.1e-08 Score=79.47 Aligned_cols=98 Identities=18% Similarity=0.237 Sum_probs=64.8
Q ss_pred cc-hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--cHHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351 27 WY-GPHMAAATRAIADRMPLVDIILEVRDARIPFSSE--FDQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD 100 (298)
Q Consensus 27 wf-pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~--~~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~ 100 (298)
|. ||+ ..........+..+|++++|+|+..+.... ...+..++. ..+.|+++++||+|+.+........+.+.
T Consensus 55 ~Dt~G~-~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~ 133 (167)
T cd04160 55 WDLGGQ-ESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQ 133 (167)
T ss_pred EECCCC-hhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhc
Confidence 44 555 455556667899999999999997653211 112222221 24789999999999866533333333332
Q ss_pred c-------cCCCEEEEecCCCcCHHHHHHHHH
Q 022351 101 Q-------QNCPSFGVNSHNKDNVKEFLKFLQ 125 (298)
Q Consensus 101 ~-------~~~~vi~iSa~~~~gi~~L~~~l~ 125 (298)
. .+.+++.+||+++.|+++++++|.
T Consensus 134 ~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 134 DKAEEIGRRDCLVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred cccccccCCceEEEEeeCCCCcCHHHHHHHHh
Confidence 1 234789999999999999998875
No 122
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.64 E-value=1.4e-07 Score=81.08 Aligned_cols=90 Identities=12% Similarity=-0.006 Sum_probs=63.5
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCc-EEEEEecCCCCChhhHH-----HHHHHHH
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMDLASPTQFK-----EWITFFD 100 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~-~IiVlNK~DL~~~~~~~-----~~~~~~~ 100 (298)
.-||| .++...+...+..+|++++|+|+..+.......+..++...++| +|+++||+|+...+... +..+.+.
T Consensus 71 DtPG~-~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~ 149 (195)
T cd01884 71 DCPGH-ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLS 149 (195)
T ss_pred ECcCH-HHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHH
Confidence 44888 46778888899999999999999887666655555444445676 67899999997543222 2223333
Q ss_pred ccC-----CCEEEEecCCCcCH
Q 022351 101 QQN-----CPSFGVNSHNKDNV 117 (298)
Q Consensus 101 ~~~-----~~vi~iSa~~~~gi 117 (298)
..+ .+++++||.+|.++
T Consensus 150 ~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 150 KYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HhcccccCCeEEEeeCccccCC
Confidence 333 47999999998763
No 123
>PTZ00099 rab6; Provisional
Probab=98.63 E-value=1.3e-07 Score=79.92 Aligned_cols=105 Identities=18% Similarity=0.086 Sum_probs=72.1
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC--CCCCcEEEEEecCCCCChh--hHHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP--FSSSRRILVLNKMDLASPT--QFKEWITFF 99 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~--~~~k~~IiVlNK~DL~~~~--~~~~~~~~~ 99 (298)
-|..++..+........+..+|++|+|+|+..+.+... ..+..++. ..+.|+++|.||+||.... ..++.....
T Consensus 33 iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e~~~~~ 112 (176)
T PTZ00099 33 LWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKA 112 (176)
T ss_pred EEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHHHHHHHH
Confidence 57766667777777788999999999999987532211 12222211 1357889999999996421 122223333
Q ss_pred HccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
...+..++.+||+++.|+++++++|.+.+++
T Consensus 113 ~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 113 QEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred HHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3345567899999999999999999988776
No 124
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.63 E-value=1.2e-07 Score=78.10 Aligned_cols=101 Identities=18% Similarity=0.009 Sum_probs=67.4
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHH
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFF 99 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~ 99 (298)
|...++.+........+..+|.+++|+|+.++.+... ..+.......+.|+++|+||+|+..... .+...+..
T Consensus 55 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~ 134 (164)
T cd04145 55 LDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELA 134 (164)
T ss_pred EECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHH
Confidence 4433335565666678899999999999987532111 1122222224789999999999965321 22223333
Q ss_pred HccCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351 100 DQQNCPSFGVNSHNKDNVKEFLKFLQAH 127 (298)
Q Consensus 100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~ 127 (298)
+..+.+++.+||+++.|++++++.+...
T Consensus 135 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 162 (164)
T cd04145 135 RKLKIPYIETSAKDRLNVDKAFHDLVRV 162 (164)
T ss_pred HHcCCcEEEeeCCCCCCHHHHHHHHHHh
Confidence 3456789999999999999999888654
No 125
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.63 E-value=9.8e-08 Score=78.40 Aligned_cols=100 Identities=14% Similarity=0.078 Sum_probs=64.4
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--cHHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE--FDQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFD 100 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~--~~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~ 100 (298)
-|..++..+........+..+|.+++|+|++.+.+.. ...+..++.. .+.|+++|+||+|+......++....+.
T Consensus 48 i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~ 127 (160)
T cd04156 48 VWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFK 127 (160)
T ss_pred EEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcC
Confidence 3444443455555567799999999999998764211 1223332221 4789999999999964322222222221
Q ss_pred ------ccCCCEEEEecCCCcCHHHHHHHHH
Q 022351 101 ------QQNCPSFGVNSHNKDNVKEFLKFLQ 125 (298)
Q Consensus 101 ------~~~~~vi~iSa~~~~gi~~L~~~l~ 125 (298)
..+.+++.+||++++|++++++.|.
T Consensus 128 ~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 128 LKKYCSDRDWYVQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred CcccCCCCcEEEEecccccCCChHHHHHHHh
Confidence 1233588899999999999998874
No 126
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.63 E-value=1.7e-07 Score=89.89 Aligned_cols=93 Identities=16% Similarity=0.171 Sum_probs=70.2
Q ss_pred HHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCC-ChhhHHHHHHHHHc-----cCCCEEEEec
Q 022351 38 AIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLA-SPTQFKEWITFFDQ-----QNCPSFGVNS 111 (298)
Q Consensus 38 ~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~-~~~~~~~~~~~~~~-----~~~~vi~iSa 111 (298)
+....+..+|++++|+|+..+.+..+..+...+...++|+++|+||+|+. +.+..+...+.+.. ...+++++||
T Consensus 247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA 326 (429)
T TIGR03594 247 RTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISA 326 (429)
T ss_pred HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeC
Confidence 33457899999999999998877766665555444689999999999998 44434444333321 1358999999
Q ss_pred CCCcCHHHHHHHHHHHHHh
Q 022351 112 HNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 112 ~~~~gi~~L~~~l~~~i~~ 130 (298)
+++.|++++++.+.+.+..
T Consensus 327 ~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 327 LTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887665
No 127
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.62 E-value=2.6e-07 Score=77.57 Aligned_cols=103 Identities=19% Similarity=0.083 Sum_probs=70.1
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-----HHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-----QLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITF 98 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-----~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~ 98 (298)
-|..+++.+........+..+|.+++|+|+..+.+..+. .+.......+.|+++|.||+|+.+... .+...+.
T Consensus 67 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~ 146 (180)
T cd04127 67 LWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKAL 146 (180)
T ss_pred EEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHH
Confidence 466555566666777889999999999999865332221 122211123678999999999965321 1222233
Q ss_pred HHccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351 99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
.+..+.+++.+||+++.|++++++.+.+.+
T Consensus 147 ~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 147 ADKYGIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 334567899999999999999999987654
No 128
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.62 E-value=2.5e-07 Score=76.31 Aligned_cols=88 Identities=16% Similarity=0.185 Sum_probs=64.5
Q ss_pred HHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh--hhHHHHHHHHHc-c----CCCEEEEec
Q 022351 39 IADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP--TQFKEWITFFDQ-Q----NCPSFGVNS 111 (298)
Q Consensus 39 i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~--~~~~~~~~~~~~-~----~~~vi~iSa 111 (298)
....+..+|++++|+|+..+.+.....+...+...++|+++++||+|+.+. .....+.+.+.+ . ..+++++||
T Consensus 78 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (174)
T cd01895 78 TLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA 157 (174)
T ss_pred HHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEec
Confidence 345678999999999999887665544444433357999999999999866 344444444422 1 347999999
Q ss_pred CCCcCHHHHHHHHHH
Q 022351 112 HNKDNVKEFLKFLQA 126 (298)
Q Consensus 112 ~~~~gi~~L~~~l~~ 126 (298)
+++.|++++.+.+..
T Consensus 158 ~~~~~i~~~~~~l~~ 172 (174)
T cd01895 158 LTGQGVDKLFDAIDE 172 (174)
T ss_pred cCCCCHHHHHHHHHH
Confidence 999999999988764
No 129
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.62 E-value=1.8e-07 Score=79.35 Aligned_cols=105 Identities=13% Similarity=-0.001 Sum_probs=67.3
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HH---HhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQ---LRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD 100 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~---l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~ 100 (298)
-|..+...+....+...+..+|++++|+|+..+..... .. +.......++|+++|+||+|+......+.....+.
T Consensus 56 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~ 135 (183)
T cd04152 56 FWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLA 135 (183)
T ss_pred EEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhC
Confidence 36544445555555677899999999999986522111 11 22222235789999999999864322222222221
Q ss_pred --cc----CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 101 --QQ----NCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 101 --~~----~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.. +.+++++||+++.|++++++.|.+.+.+
T Consensus 136 ~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 136 LHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred ccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHH
Confidence 11 2357899999999999999998877654
No 130
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.62 E-value=1.1e-07 Score=81.39 Aligned_cols=93 Identities=18% Similarity=0.120 Sum_probs=61.5
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh---hHHHHHHHHH---
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT---QFKEWITFFD--- 100 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~---~~~~~~~~~~--- 100 (298)
|...+..+....+...+..+|.+++|+|+..........+...+...++|+++|+||+|+.... ..+++.+.+.
T Consensus 70 ~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 149 (194)
T cd01891 70 VDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELG 149 (194)
T ss_pred EECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhC
Confidence 4443336677777888999999999999987543332232222223578999999999996432 2334444442
Q ss_pred ----ccCCCEEEEecCCCcCHHH
Q 022351 101 ----QQNCPSFGVNSHNKDNVKE 119 (298)
Q Consensus 101 ----~~~~~vi~iSa~~~~gi~~ 119 (298)
..+++++++||++|.|+.+
T Consensus 150 ~~~~~~~~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 150 ATEEQLDFPVLYASAKNGWASLN 172 (194)
T ss_pred CccccCccCEEEeehhccccccc
Confidence 2356899999999976533
No 131
>PRK09866 hypothetical protein; Provisional
Probab=98.62 E-value=2.5e-07 Score=91.11 Aligned_cols=89 Identities=16% Similarity=0.074 Sum_probs=65.4
Q ss_pred HHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCC--CcEEEEEecCCCCC-----hhhHHHHHH-HHHccC---CCE
Q 022351 38 AIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSS--SRRILVLNKMDLAS-----PTQFKEWIT-FFDQQN---CPS 106 (298)
Q Consensus 38 ~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~--k~~IiVlNK~DL~~-----~~~~~~~~~-~~~~~~---~~v 106 (298)
.+.+.+..+|+|++|+|+..+....+..+.+.++..+ .|+++|+||+|+.+ .+.+.+.+. .+.... ..+
T Consensus 251 ~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eI 330 (741)
T PRK09866 251 MLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQI 330 (741)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceE
Confidence 3446799999999999998877766766766655445 49999999999975 223333333 222212 269
Q ss_pred EEEecCCCcCHHHHHHHHHH
Q 022351 107 FGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 107 i~iSa~~~~gi~~L~~~l~~ 126 (298)
+++||+.+.|++.|++.|..
T Consensus 331 fPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 331 FPVSSMWGYLANRARHELAN 350 (741)
T ss_pred EEEeCCCCCCHHHHHHHHHh
Confidence 99999999999999998875
No 132
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.61 E-value=7.8e-08 Score=78.97 Aligned_cols=59 Identities=24% Similarity=0.263 Sum_probs=38.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGIL 211 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~ 211 (298)
.|+++|.+|||||||+|+|.+.. .........+++|.+... +.+..+..+.++||||..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~---------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~ 62 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE---------TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE 62 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc---------cccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH
Confidence 68999999999999999998310 011111234566766543 223224468999999963
No 133
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.61 E-value=2.6e-07 Score=76.07 Aligned_cols=103 Identities=14% Similarity=0.075 Sum_probs=68.3
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc-----cHHHhccCCC----CCCcEEEEEecCCCCChh--hHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE-----FDQLRNHHPF----SSSRRILVLNKMDLASPT--QFKE 94 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~-----~~~l~~~l~~----~~k~~IiVlNK~DL~~~~--~~~~ 94 (298)
-|..+...+........+..+|++|+|+|++.+.+.. ...+...... .+.|+++|.||+|+.+.. ..+.
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 132 (168)
T cd04119 53 FFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDE 132 (168)
T ss_pred EEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHH
Confidence 4554444555566667789999999999998753211 1122222221 468999999999997321 2222
Q ss_pred HHHHHHccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351 95 WITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 95 ~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
........+.+++.+||+++.|++++++.+.+.+
T Consensus 133 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 133 GRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred HHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 2233334567899999999999999999987543
No 134
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.61 E-value=8e-08 Score=79.39 Aligned_cols=56 Identities=25% Similarity=0.443 Sum_probs=39.8
Q ss_pred EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc----CCCEEEEeCCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS----HPNIYVLDTPGIL 211 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~----~~~~~liDTPGi~ 211 (298)
.|+++|.+|+|||||+|+|.. .+ ......+++|.+.....+.. +..+.++||||..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~-----------~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~ 61 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRK-----------TN-VAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE 61 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHh-----------cc-cccccCCCeEEeeccEEEecccCCcceEEEEeCCCcH
Confidence 589999999999999999983 11 12235567777665433322 4468999999964
No 135
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.61 E-value=1.8e-07 Score=76.48 Aligned_cols=101 Identities=18% Similarity=0.072 Sum_probs=68.6
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh-hHHHHHHHHH
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT-QFKEWITFFD 100 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~-~~~~~~~~~~ 100 (298)
|..++..+.......++..+|.+++|+|..++.+..+ ..+..+....+.|+++|.||+|+.... ......+..+
T Consensus 54 ~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~ 133 (162)
T cd04138 54 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAK 133 (162)
T ss_pred EECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHH
Confidence 6655556666666678999999999999876432111 112222223578999999999997532 1223333333
Q ss_pred ccCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351 101 QQNCPSFGVNSHNKDNVKEFLKFLQAH 127 (298)
Q Consensus 101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~ 127 (298)
..+.+++.+||+++.|++++++.+.+.
T Consensus 134 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 134 SYGIPYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred HhCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 456789999999999999999888653
No 136
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.59 E-value=1.3e-07 Score=80.33 Aligned_cols=101 Identities=17% Similarity=0.064 Sum_probs=66.6
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc--ccHHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS--EFDQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD 100 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~--~~~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~ 100 (298)
-|..++..+.......++..+|.+++|+|+..+..- ....+..++. ..++|+++|+||+|+......++..+.+.
T Consensus 65 ~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~ 144 (184)
T smart00178 65 TFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALG 144 (184)
T ss_pred EEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcC
Confidence 355444455666667889999999999999875221 1122333322 25789999999999853322233333331
Q ss_pred --c----------cCCCEEEEecCCCcCHHHHHHHHHH
Q 022351 101 --Q----------QNCPSFGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 101 --~----------~~~~vi~iSa~~~~gi~~L~~~l~~ 126 (298)
+ ....++.+||+++.|+++++++|.+
T Consensus 145 l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 145 LTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred CCcccccccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 1 1225899999999999999999864
No 137
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.59 E-value=3.1e-07 Score=75.86 Aligned_cols=99 Identities=16% Similarity=0.127 Sum_probs=65.4
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHH------
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFD------ 100 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~------ 100 (298)
||+ ..........+..+|++++|+|+..+...........+...++|+++|+||+|+.... ........+.
T Consensus 58 pG~-~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 136 (168)
T cd01887 58 PGH-EAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDE 136 (168)
T ss_pred CCc-HHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhcccccc
Confidence 565 3344444556789999999999987543332222223333679999999999997432 2222222221
Q ss_pred -ccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351 101 -QQNCPSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 101 -~~~~~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
....+++.+|+.++.|++++++++.+..
T Consensus 137 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 137 WGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred ccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 1134789999999999999999987654
No 138
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.59 E-value=1.3e-07 Score=78.30 Aligned_cols=91 Identities=22% Similarity=0.285 Sum_probs=62.4
Q ss_pred HHHHHhcCCCCeEEEEEeCCCC-CCccc-HH----HhccCC-CCCCcEEEEEecCCCCChhhHHHHHHHHHcc--CCCEE
Q 022351 37 RAIADRMPLVDIILEVRDARIP-FSSEF-DQ----LRNHHP-FSSSRRILVLNKMDLASPTQFKEWITFFDQQ--NCPSF 107 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p-~~~~~-~~----l~~~l~-~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~--~~~vi 107 (298)
....+.+..+|++++|+|++.+ ..... .. +..... ..++|+++|+||+|+.+......+...+... +.+++
T Consensus 70 ~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 149 (170)
T cd01898 70 HRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVF 149 (170)
T ss_pred HHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEE
Confidence 3444556789999999999876 22111 11 222111 1368999999999998766555555444332 56799
Q ss_pred EEecCCCcCHHHHHHHHHHH
Q 022351 108 GVNSHNKDNVKEFLKFLQAH 127 (298)
Q Consensus 108 ~iSa~~~~gi~~L~~~l~~~ 127 (298)
.+||+++.|++++++++.+.
T Consensus 150 ~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 150 PISALTGEGLDELLRKLAEL 169 (170)
T ss_pred EEecCCCCCHHHHHHHHHhh
Confidence 99999999999999888643
No 139
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.58 E-value=1.4e-07 Score=79.21 Aligned_cols=96 Identities=14% Similarity=0.097 Sum_probs=63.4
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--cHHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHH---
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSE--FDQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFD--- 100 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~--~~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~--- 100 (298)
||+ .+........+..+|++++|+|+..+.... ...+..++.. .+.|+++++||+|+......++..+.+.
T Consensus 67 ~G~-~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~ 145 (174)
T cd04153 67 GGQ-ESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTS 145 (174)
T ss_pred CCC-HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCccc
Confidence 454 455555667789999999999998653211 1223333221 3689999999999865322223333331
Q ss_pred --ccCCCEEEEecCCCcCHHHHHHHHH
Q 022351 101 --QQNCPSFGVNSHNKDNVKEFLKFLQ 125 (298)
Q Consensus 101 --~~~~~vi~iSa~~~~gi~~L~~~l~ 125 (298)
...++++++||+++.|+++++++|.
T Consensus 146 ~~~~~~~~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 146 IRDHTWHIQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred ccCCceEEEecccCCCCCHHHHHHHHh
Confidence 2234689999999999999998875
No 140
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.58 E-value=2.6e-07 Score=78.41 Aligned_cols=104 Identities=14% Similarity=0.081 Sum_probs=67.5
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc--ccHHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHHc
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS--EFDQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFDQ 101 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~--~~~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~~ 101 (298)
|..++..+.......++..+|++|+|+|+.++.+- ....+..++.. ...|+++|.||+|+.......+....+..
T Consensus 66 ~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~ 145 (182)
T PTZ00133 66 WDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGL 145 (182)
T ss_pred EECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCC
Confidence 55555456666667789999999999999764321 11223333222 35899999999998653222333333311
Q ss_pred -----cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 102 -----QNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 102 -----~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
..+.++.+||+++.|+++++++|.+.+..
T Consensus 146 ~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 146 HSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred CcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHH
Confidence 11235578999999999999999876543
No 141
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.58 E-value=3.4e-07 Score=87.58 Aligned_cols=102 Identities=18% Similarity=0.211 Sum_probs=70.5
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-CcccHHHhccCCCC-CCcEEEEEecCCCCChhhHH----HHHHHHHc
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPF-SSEFDQLRNHHPFS-SSRRILVLNKMDLASPTQFK----EWITFFDQ 101 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~-~~~~~~l~~~l~~~-~k~~IiVlNK~DL~~~~~~~----~~~~~~~~ 101 (298)
-||| .++...+...+..+|.+++|+|++.+. .........++... .+++++|+||+|+.+.+... +....+..
T Consensus 92 tPG~-~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~ 170 (411)
T PRK04000 92 APGH-ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKEFVKG 170 (411)
T ss_pred CCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHHHhcc
Confidence 3777 677888888888999999999999765 33322222222222 35789999999998654322 22222221
Q ss_pred ---cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 102 ---QNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 102 ---~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+.+++++||+++.|+++|++.|.+.++.
T Consensus 171 ~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 171 TVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred ccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 24578999999999999999999876653
No 142
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.57 E-value=4.8e-07 Score=87.84 Aligned_cols=93 Identities=19% Similarity=0.350 Sum_probs=66.0
Q ss_pred HHHHhcCCCCeEEEEEeCCC------CCCccc---HHHhccC----------CCCCCcEEEEEecCCCCChhhHHHH-HH
Q 022351 38 AIADRMPLVDIILEVRDARI------PFSSEF---DQLRNHH----------PFSSSRRILVLNKMDLASPTQFKEW-IT 97 (298)
Q Consensus 38 ~i~~~l~~aDlVl~VvDa~~------p~~~~~---~~l~~~l----------~~~~k~~IiVlNK~DL~~~~~~~~~-~~ 97 (298)
...+.++++|+||+|+|+.. |+.... .+|..+. ...++|+|+|+||+|+.+.....++ ..
T Consensus 229 ~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~ 308 (500)
T PRK12296 229 DFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRP 308 (500)
T ss_pred HHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHH
Confidence 44567889999999999964 222211 1233332 1246999999999999755433332 33
Q ss_pred HHHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 98 FFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 98 ~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+...+++++++||+++.|+++|+.+|.+.+..
T Consensus 309 ~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 309 ELEARGWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred HHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 454557789999999999999999999888766
No 143
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.57 E-value=5.6e-07 Score=74.62 Aligned_cols=104 Identities=16% Similarity=0.120 Sum_probs=68.7
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCC---CCCCcEEEEEecCCCCChh--hHHHHH
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHP---FSSSRRILVLNKMDLASPT--QFKEWI 96 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~---~~~k~~IiVlNK~DL~~~~--~~~~~~ 96 (298)
|..+.+..........+..+|.+|+|+|+..+.+..+ ..+...+. ..++|+++|+||+|+..+. ..+...
T Consensus 54 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 133 (172)
T cd01862 54 WDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQ 133 (172)
T ss_pred EeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHH
Confidence 4544445566666678999999999999987643111 11122111 1378999999999997321 122222
Q ss_pred HHHHccC-CCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 97 TFFDQQN-CPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 97 ~~~~~~~-~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
...+..+ .+++.+|+.++.|++++++.+.+.+-+
T Consensus 134 ~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 134 QWCQSNGNIPYFETSAKEAINVEQAFETIARKALE 168 (172)
T ss_pred HHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3333344 589999999999999999998876543
No 144
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.56 E-value=1.7e-07 Score=75.40 Aligned_cols=58 Identities=31% Similarity=0.453 Sum_probs=42.3
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cC--CCEEEEeCCCCCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SH--PNIYVLDTPGILP 212 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~--~~~~liDTPGi~~ 212 (298)
.+|+++|.+|+|||||+|+|.. .. ......|++|.+.....+. .+ ..+.++||||...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 62 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLG-----------NK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQED 62 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhC-----------CC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCccc
Confidence 5899999999999999999983 22 5556677888877653222 22 2478899999433
No 145
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.56 E-value=3.8e-07 Score=75.15 Aligned_cols=102 Identities=16% Similarity=0.087 Sum_probs=68.0
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHH-hccCC-CCCCcEEEEEecCCCCChhhHH--HHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQL-RNHHP-FSSSRRILVLNKMDLASPTQFK--EWITFFD 100 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l-~~~l~-~~~k~~IiVlNK~DL~~~~~~~--~~~~~~~ 100 (298)
-|..+++.+....+...+.++|++++|+|...+.+..+ ..+ ..+.. ..+.|+++|.||+|+.+...+. ....+..
T Consensus 56 i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 135 (164)
T cd04101 56 IFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQ 135 (164)
T ss_pred EEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHH
Confidence 57765556666667788999999999999976532111 111 11111 1368999999999997543221 1112222
Q ss_pred ccCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351 101 QQNCPSFGVNSHNKDNVKEFLKFLQAH 127 (298)
Q Consensus 101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~ 127 (298)
..+.+++.+||+++.|++++++.+.+.
T Consensus 136 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 136 ANQLKFFKTSALRGVGYEEPFESLARA 162 (164)
T ss_pred HcCCeEEEEeCCCCCChHHHHHHHHHH
Confidence 345678999999999999999888654
No 146
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.56 E-value=3.5e-07 Score=88.03 Aligned_cols=93 Identities=16% Similarity=0.205 Sum_probs=71.4
Q ss_pred HHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHc-----cCCCEEEEecC
Q 022351 38 AIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQ-----QNCPSFGVNSH 112 (298)
Q Consensus 38 ~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~-----~~~~vi~iSa~ 112 (298)
.....+..+|++|+|+|+..+.+..+..+..++...++|+++|+||+|+.+.+..+...+.+.. ...+++++||+
T Consensus 248 ~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~ 327 (435)
T PRK00093 248 RTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISAL 327 (435)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCC
Confidence 3445788999999999999988777766655544468999999999999865544444444321 13589999999
Q ss_pred CCcCHHHHHHHHHHHHHh
Q 022351 113 NKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 113 ~~~gi~~L~~~l~~~i~~ 130 (298)
++.|++++++.+.+....
T Consensus 328 ~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 328 TGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999877655
No 147
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=1.7e-07 Score=89.86 Aligned_cols=120 Identities=22% Similarity=0.189 Sum_probs=88.6
Q ss_pred HHHhhhcceecccCCC-------------ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCc
Q 022351 10 KLAREIGTAVSQKKGG-------------GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR 76 (298)
Q Consensus 10 ~~~~~~g~~~~~~~~~-------------~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~ 76 (298)
+|+||.|.+...+-.. -.-||| ..+.-.+.+.+..||-+|+||||..+...+-..-..+..+.+..
T Consensus 101 ~vERERGITIkaQtasify~~~~~ylLNLIDTPGH-vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~ 179 (650)
T KOG0462|consen 101 QVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH-VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLA 179 (650)
T ss_pred hhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc-ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCe
Confidence 6789999999887752 123899 56778888899999999999999987665443221111146889
Q ss_pred EEEEEecCCCCC--hhhHH-HHHHHHHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 77 RILVLNKMDLAS--PTQFK-EWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 77 ~IiVlNK~DL~~--~~~~~-~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+|.|+||+|+-. ++.+. ...+.|.....+++.+||++|.++++++++|.+.++.
T Consensus 180 iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 180 IIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred EEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCC
Confidence 999999999954 34333 3333443344589999999999999999999887654
No 148
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.56 E-value=3e-07 Score=87.87 Aligned_cols=102 Identities=20% Similarity=0.212 Sum_probs=70.7
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-CcccHHHhccCCC-CCCcEEEEEecCCCCChhhHH----HHHHHHH
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPF-SSEFDQLRNHHPF-SSSRRILVLNKMDLASPTQFK----EWITFFD 100 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~-~~~~~~l~~~l~~-~~k~~IiVlNK~DL~~~~~~~----~~~~~~~ 100 (298)
.-||| .++.+.+...+..+|.+++|+|++.+. .....+....+.. ..+++++++||+|+.+.+... +..+.+.
T Consensus 86 DtPGh-~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~ 164 (406)
T TIGR03680 86 DAPGH-ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEFVK 164 (406)
T ss_pred ECCCH-HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhhhh
Confidence 34777 678888888899999999999999764 3332222222112 346789999999998754322 2222222
Q ss_pred c---cCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 101 Q---QNCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 101 ~---~~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
. .+.+++++||+++.|+++|+++|...++
T Consensus 165 ~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 165 GTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred hcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 2 1457899999999999999999987654
No 149
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.56 E-value=4.1e-07 Score=75.29 Aligned_cols=83 Identities=17% Similarity=0.056 Sum_probs=56.8
Q ss_pred CCCeEEEEEeCCCCCCc-cc--HHHhccCCC--CCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCcCHHH
Q 022351 45 LVDIILEVRDARIPFSS-EF--DQLRNHHPF--SSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKE 119 (298)
Q Consensus 45 ~aDlVl~VvDa~~p~~~-~~--~~l~~~l~~--~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~ 119 (298)
.+|++++|+|+..+... .. ..+...+.. .+.|+++|+||+|+.+........++......+++.+||+++.|+++
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDE 158 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHH
Confidence 36899999999865431 11 122222222 37999999999999866544432233323456899999999999999
Q ss_pred HHHHHHHH
Q 022351 120 FLKFLQAH 127 (298)
Q Consensus 120 L~~~l~~~ 127 (298)
+++++.+.
T Consensus 159 l~~~l~~~ 166 (168)
T cd01897 159 VKNKACEL 166 (168)
T ss_pred HHHHHHHH
Confidence 99988654
No 150
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.56 E-value=5.1e-07 Score=73.31 Aligned_cols=85 Identities=19% Similarity=0.200 Sum_probs=65.2
Q ss_pred HHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCc
Q 022351 36 TRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKD 115 (298)
Q Consensus 36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~ 115 (298)
.......+.++|++++|+|+..+....+..+... ..++|+++|+||+|+.+.... .....+.+++.+||.++.
T Consensus 71 ~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 143 (157)
T cd04164 71 IERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGE 143 (157)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCC
Confidence 3455567889999999999998766655544433 367999999999999875543 222345689999999999
Q ss_pred CHHHHHHHHHHH
Q 022351 116 NVKEFLKFLQAH 127 (298)
Q Consensus 116 gi~~L~~~l~~~ 127 (298)
|++++.++|.+.
T Consensus 144 ~v~~l~~~l~~~ 155 (157)
T cd04164 144 GLDELKEALLEL 155 (157)
T ss_pred CHHHHHHHHHHh
Confidence 999999998764
No 151
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.56 E-value=3.4e-07 Score=85.15 Aligned_cols=94 Identities=19% Similarity=0.283 Sum_probs=64.8
Q ss_pred HHHHHhcCCCCeEEEEEeCCCCCCccc-HHH----hccCC-CCCCcEEEEEecCCCCChhhHH-HHHH-HHHccCCCEEE
Q 022351 37 RAIADRMPLVDIILEVRDARIPFSSEF-DQL----RNHHP-FSSSRRILVLNKMDLASPTQFK-EWIT-FFDQQNCPSFG 108 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l----~~~l~-~~~k~~IiVlNK~DL~~~~~~~-~~~~-~~~~~~~~vi~ 108 (298)
.++.+.+++++++++|+|+..+.+..+ ..+ ..+.. ..++|+++|+||+|+.+..... ...+ ++...+.++++
T Consensus 228 ~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~ 307 (335)
T PRK12299 228 HRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFL 307 (335)
T ss_pred HHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEE
Confidence 455667889999999999986432111 112 22211 1368999999999997654322 2222 23344578999
Q ss_pred EecCCCcCHHHHHHHHHHHHHh
Q 022351 109 VNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 109 iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+||++++|+++++++|.+.+.+
T Consensus 308 iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 308 ISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred EEcCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999887765
No 152
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.55 E-value=2.3e-07 Score=78.75 Aligned_cols=101 Identities=19% Similarity=0.156 Sum_probs=64.9
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc--ccHHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHHc
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS--EFDQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFDQ 101 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~--~~~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~ 101 (298)
|..+++.........++..+|.+++|+|+.++... ....+...+. ..+.|+++++||+|+......++..+.+..
T Consensus 68 ~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~ 147 (190)
T cd00879 68 FDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGL 147 (190)
T ss_pred EECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCc
Confidence 44333345555566788999999999999864221 1122222221 246899999999999643222333333311
Q ss_pred ----------------cCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351 102 ----------------QNCPSFGVNSHNKDNVKEFLKFLQAH 127 (298)
Q Consensus 102 ----------------~~~~vi~iSa~~~~gi~~L~~~l~~~ 127 (298)
...+++.+||+++.|++++++++.++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 148 YGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred ccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 11357899999999999999998653
No 153
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.55 E-value=3.4e-07 Score=77.76 Aligned_cols=105 Identities=15% Similarity=0.070 Sum_probs=67.3
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC-CCCCcEEEEEecCCCCCh----h--hHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP-FSSSRRILVLNKMDLASP----T--QFKEWI 96 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~-~~~k~~IiVlNK~DL~~~----~--~~~~~~ 96 (298)
-|..+...+........+..+|++++|+|..++.+..+ ..+..+.. ....+.++|.||+||... + ...+..
T Consensus 53 iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~ 132 (182)
T cd04128 53 IWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQA 132 (182)
T ss_pred EEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHH
Confidence 47766656665556678999999999999987643222 11111111 122334789999999521 1 111122
Q ss_pred -HHHHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 97 -TFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 97 -~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
++.+..+.+++.+||+++.|++++++.+.+.+.+
T Consensus 133 ~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 133 RKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 2223445678999999999999999998876654
No 154
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=8.1e-08 Score=88.76 Aligned_cols=60 Identities=27% Similarity=0.454 Sum_probs=46.3
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEcc----------C--C-----CE
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIAS----------H--P-----NI 202 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~----------~--~-----~~ 202 (298)
.+++++||.||||||||+|+|+. . .+..+++|+||.++.. +.+.. . + .+
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~-----------~-~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~v 69 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTK-----------A-GAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPV 69 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHc-----------C-CccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeee
Confidence 36899999999999999999993 2 2788999999988763 22211 1 1 48
Q ss_pred EEEeCCCCCCC
Q 022351 203 YVLDTPGILPP 213 (298)
Q Consensus 203 ~liDTPGi~~~ 213 (298)
.++|.+|+...
T Consensus 70 e~vDIAGLV~G 80 (372)
T COG0012 70 EFVDIAGLVKG 80 (372)
T ss_pred EEEEecccCCC
Confidence 89999999874
No 155
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.54 E-value=2.8e-07 Score=85.52 Aligned_cols=92 Identities=20% Similarity=0.343 Sum_probs=64.3
Q ss_pred HHHHHhcCCCCeEEEEEeCCCCCC--cc--cH----HHhccCC-CCCCcEEEEEecCCCCChhhHHHHHHHHH-ccCCCE
Q 022351 37 RAIADRMPLVDIILEVRDARIPFS--SE--FD----QLRNHHP-FSSSRRILVLNKMDLASPTQFKEWITFFD-QQNCPS 106 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p~~--~~--~~----~l~~~l~-~~~k~~IiVlNK~DL~~~~~~~~~~~~~~-~~~~~v 106 (298)
....+.++++|++++|+|+..... .. .. ++..+.. ..++|+++|+||+|+.+....+++.+.+. ..+.++
T Consensus 227 ~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~v 306 (329)
T TIGR02729 227 HRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPV 306 (329)
T ss_pred HHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcE
Confidence 345566889999999999985411 11 11 1222211 14789999999999987655555555553 335689
Q ss_pred EEEecCCCcCHHHHHHHHHHHH
Q 022351 107 FGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 107 i~iSa~~~~gi~~L~~~l~~~i 128 (298)
+++||++++|++++++.+.+.+
T Consensus 307 i~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 307 FPISALTGEGLDELLYALAELL 328 (329)
T ss_pred EEEEccCCcCHHHHHHHHHHHh
Confidence 9999999999999999987653
No 156
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.54 E-value=5.7e-07 Score=73.78 Aligned_cols=101 Identities=16% Similarity=0.025 Sum_probs=68.0
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--cHH---HhccCCCCCCcEEEEEecCCCCCh--hhHHHHHHHHH
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE--FDQ---LRNHHPFSSSRRILVLNKMDLASP--TQFKEWITFFD 100 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~--~~~---l~~~l~~~~k~~IiVlNK~DL~~~--~~~~~~~~~~~ 100 (298)
.||+ ..........+..+|.+++|+|...+.+.. ... +.......++|+++|+||+|+... ...........
T Consensus 55 ~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~ 133 (164)
T cd04139 55 TAGQ-EDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLAR 133 (164)
T ss_pred CCCh-hhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHH
Confidence 3454 555556667899999999999987653211 111 222211257999999999999762 12223333333
Q ss_pred ccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 101 QQNCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
..+.+++.+||+++.|++++++.+.+.+.
T Consensus 134 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 134 QWGVPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred HhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999876553
No 157
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.54 E-value=4.6e-07 Score=77.52 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=73.2
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITF 98 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~ 98 (298)
-|...++.+........+..+|.+|+|+|...+.+..+ .++... ..+.|++||.||+||.... ..++..++
T Consensus 59 iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~--~~~~piilVGNK~DL~~~~~v~~~~~~~~ 136 (189)
T cd04121 59 LWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEH--APGVPKILVGNRLHLAFKRQVATEQAQAY 136 (189)
T ss_pred EEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccchhccCCCHHHHHHH
Confidence 48876667766667778899999999999987644322 122222 2478999999999996421 12222333
Q ss_pred HHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+..+.+++.+||+++.|++++++.+.+.+..
T Consensus 137 a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 137 AERNGMTFFEVSPLCNFNITESFTELARIVLM 168 (189)
T ss_pred HHHcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 34456789999999999999999999876544
No 158
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.54 E-value=2e-07 Score=76.50 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=37.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccC-CCEEEEeCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASH-PNIYVLDTPGI 210 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~-~~~~liDTPGi 210 (298)
+|+++|.+|||||||+|+|++ .....+..|++|.+... +.+.+. -.+.++||||-
T Consensus 2 ki~liG~~~~GKSsli~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~ 59 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMY------------DTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ 59 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHc------------CCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCc
Confidence 689999999999999999983 12223455666655443 222221 14789999994
No 159
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.53 E-value=3.5e-07 Score=75.38 Aligned_cols=103 Identities=21% Similarity=0.104 Sum_probs=67.3
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHH
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFF 99 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~ 99 (298)
|..+.+.+........+..+|.+++|+|+..+.+... ..+.+.....+.|+++|.||+|+.+.. ..+......
T Consensus 53 ~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~ 132 (164)
T smart00173 53 LDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA 132 (164)
T ss_pred EECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH
Confidence 4444434555555567889999999999986532111 112222222468999999999997532 112222233
Q ss_pred HccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
+..+.+++.+||+++.|++++++.+.+.+.
T Consensus 133 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 133 RQWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred HHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 344578999999999999999999876553
No 160
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.53 E-value=5.4e-07 Score=73.54 Aligned_cols=82 Identities=16% Similarity=0.083 Sum_probs=58.4
Q ss_pred CCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH-ccCCCEEEEecCCCcCHHHHHH
Q 022351 44 PLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLK 122 (298)
Q Consensus 44 ~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~-~~~~~vi~iSa~~~~gi~~L~~ 122 (298)
+.+|++++|+|+..+... ..+...+...++|+++|+||+|+.+......+.+.+. ..+.+++++||.++.|++++++
T Consensus 73 ~~~d~vi~v~d~~~~~~~--~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~ 150 (158)
T cd01879 73 EKPDLIVNVVDATNLERN--LYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKD 150 (158)
T ss_pred CCCcEEEEEeeCCcchhH--HHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHH
Confidence 599999999999864321 2222222235799999999999976543333333332 3467899999999999999998
Q ss_pred HHHHH
Q 022351 123 FLQAH 127 (298)
Q Consensus 123 ~l~~~ 127 (298)
.+.+.
T Consensus 151 ~l~~~ 155 (158)
T cd01879 151 AIAEL 155 (158)
T ss_pred HHHHH
Confidence 88764
No 161
>PTZ00369 Ras-like protein; Provisional
Probab=98.53 E-value=3.5e-07 Score=77.90 Aligned_cols=104 Identities=21% Similarity=0.064 Sum_probs=69.3
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHH
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFF 99 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~ 99 (298)
|..++..+.......++..+|++++|+|+.++.+..+ ..+.+.....+.|+++|.||+|+.+... ........
T Consensus 58 ~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~ 137 (189)
T PTZ00369 58 LDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELA 137 (189)
T ss_pred EeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH
Confidence 6554446666666678999999999999987533111 1222222234789999999999854321 11222222
Q ss_pred HccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+..+.+++.+||+++.|+++++.++.+.+..
T Consensus 138 ~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 138 KSFGIPFLETSAKQRVNVDEAFYELVREIRK 168 (189)
T ss_pred HHhCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 3345688999999999999999988766544
No 162
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.52 E-value=8.8e-07 Score=73.41 Aligned_cols=104 Identities=15% Similarity=0.064 Sum_probs=68.8
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhccC---CCCCCcEEEEEecCCCCChhh--HHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRNHH---PFSSSRRILVLNKMDLASPTQ--FKEWITFF 99 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~~l---~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~ 99 (298)
-|..++..+........+..+|.+++|+|...+.+... ..+...+ .....|+++|.||+|+.+... .+...+..
T Consensus 54 l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~ 133 (165)
T cd01865 54 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLA 133 (165)
T ss_pred EEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHH
Confidence 45554445555556678999999999999876422111 1111111 113688999999999975432 22222333
Q ss_pred HccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
...+++++.+||+++.|++++++.+.+.+.
T Consensus 134 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 134 DQLGFEFFEASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred HHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345678999999999999999999876653
No 163
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.52 E-value=6.9e-07 Score=74.98 Aligned_cols=105 Identities=18% Similarity=0.096 Sum_probs=71.1
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-----HHhccCCCCCCcEEEEEecCCCCChhhH--HHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-----QLRNHHPFSSSRRILVLNKMDLASPTQF--KEWITF 98 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-----~l~~~l~~~~k~~IiVlNK~DL~~~~~~--~~~~~~ 98 (298)
-|..+...+........+..+|.+++|+|..++.+.... .+.......+.|+++|.||+|+.....+ ++..+.
T Consensus 54 i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~ 133 (172)
T cd04141 54 ILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNL 133 (172)
T ss_pred EEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHH
Confidence 466555566655566789999999999999876543321 1222212247899999999998543211 122222
Q ss_pred HHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+..+.+++.+||+++.|++++++++...+..
T Consensus 134 a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 134 AREFNCPFFETSAALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred HHHhCCEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 33456789999999999999999998765543
No 164
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.52 E-value=3.5e-07 Score=75.13 Aligned_cols=101 Identities=19% Similarity=0.072 Sum_probs=66.6
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhhH--HHHHHHH
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQF--KEWITFF 99 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~~--~~~~~~~ 99 (298)
|..+++.+.......++..+|.+++|+|..++.+..+ ..+.......+.|+++|.||+|+.+.... +......
T Consensus 54 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 133 (163)
T cd04136 54 LDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALA 133 (163)
T ss_pred EECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHH
Confidence 6665555555555677899999999999976533211 11222212246899999999999653221 1111222
Q ss_pred HccCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351 100 DQQNCPSFGVNSHNKDNVKEFLKFLQAH 127 (298)
Q Consensus 100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~ 127 (298)
+..+.+++.+||+++.|++++++++.+.
T Consensus 134 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 134 RQWGCPFYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred HHcCCeEEEecCCCCCCHHHHHHHHHHh
Confidence 2335678999999999999999988653
No 165
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.51 E-value=7.8e-07 Score=73.04 Aligned_cols=104 Identities=19% Similarity=0.091 Sum_probs=70.4
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-HH-hccC--CCCCCcEEEEEecCCCCChh--hHHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-QL-RNHH--PFSSSRRILVLNKMDLASPT--QFKEWITFF 99 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-~l-~~~l--~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~ 99 (298)
-|..+...+........+..+|++++|+|++++.+.... .+ ..+. ...+.|+++|.||+|+.+.. ..+...+..
T Consensus 53 l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~ 132 (164)
T smart00175 53 IWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFA 132 (164)
T ss_pred EEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHH
Confidence 444444456666677889999999999999875432211 11 1111 11478999999999987532 222233333
Q ss_pred HccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
+..+.+++.+|+.++.|++++++.+.+.+.
T Consensus 133 ~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 133 EEHGLPFFETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred HHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 345678999999999999999999987654
No 166
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.51 E-value=6.7e-07 Score=76.88 Aligned_cols=105 Identities=16% Similarity=0.084 Sum_probs=69.8
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCC---CCCCcEEEEEecCCCCCh--hhHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHP---FSSSRRILVLNKMDLASP--TQFKEW 95 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~---~~~k~~IiVlNK~DL~~~--~~~~~~ 95 (298)
-|..++..+........+..+|.+|+|+|...+.+-.+ ..+...+. ..+.|+++|.||+|+.+. ...++.
T Consensus 54 l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~ 133 (201)
T cd04107 54 LWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQM 133 (201)
T ss_pred EEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHH
Confidence 35544435555556678999999999999987643221 12222111 246899999999999631 122233
Q ss_pred HHHHHccC-CCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 96 ITFFDQQN-CPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 96 ~~~~~~~~-~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.++.+..+ ..++.+||+++.|+++++++|.+.+..
T Consensus 134 ~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 134 DQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred HHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 33333445 478999999999999999998876643
No 167
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.51 E-value=3.2e-07 Score=75.76 Aligned_cols=103 Identities=17% Similarity=0.029 Sum_probs=67.9
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhhH--HHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQF--KEWITF 98 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~~--~~~~~~ 98 (298)
-|..+++.+........+..+|.+++|+|...+.+..+ ..+.......+.|+++|.||+|+.+.... +...+.
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 132 (164)
T cd04175 53 ILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNL 132 (164)
T ss_pred EEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHH
Confidence 36655545555555667899999999999875432211 11222212357899999999999643211 111122
Q ss_pred HHccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351 99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
.+..+.+++.+||+++.|+++++.++.+.+
T Consensus 133 ~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 133 ARQWGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred HHHhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 234457899999999999999999987654
No 168
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.51 E-value=4.5e-07 Score=75.05 Aligned_cols=99 Identities=17% Similarity=0.144 Sum_probs=66.9
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--H---HHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHH
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--D---QLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFD 100 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~---~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~ 100 (298)
.||+ .+........+..+|.+++|+|+.++.+..+ . .+..+ ...+.|+++|.||+|+..... .+......+
T Consensus 58 ~~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~ 135 (166)
T cd01869 58 TAGQ-ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTDKRVVDYSEAQEFAD 135 (166)
T ss_pred CCCc-HhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEEChhcccccCCCHHHHHHHHH
Confidence 4565 4566666778999999999999976432111 1 11111 114689999999999864422 122223333
Q ss_pred ccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351 101 QQNCPSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
..+.+++.+||+++.|+++++..+.+.+
T Consensus 136 ~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 136 ELGIPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred HcCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence 4567899999999999999999887655
No 169
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.50 E-value=5.2e-07 Score=77.93 Aligned_cols=103 Identities=13% Similarity=0.088 Sum_probs=71.6
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD 100 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~ 100 (298)
-|..+...+.......++..+|++|+|+|+..+.+... ..+... ..+.|+++|.||+||.......+..+..+
T Consensus 48 iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~~~~~ 125 (200)
T smart00176 48 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKDRKVKAKSITFHR 125 (200)
T ss_pred EEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccCCHHHHHHHH
Confidence 57766656666666678999999999999987533221 112222 14789999999999864321122223333
Q ss_pred ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 101 QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
..++.++.+||+++.|+++++.++.+.+.+
T Consensus 126 ~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 126 KKNLQYYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred HcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 456789999999999999999999876643
No 170
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.50 E-value=6.3e-07 Score=77.51 Aligned_cols=104 Identities=14% Similarity=0.053 Sum_probs=71.5
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-HHhccC---CCCCCcEEEEEecCCCCChhhH--HHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-QLRNHH---PFSSSRRILVLNKMDLASPTQF--KEWITFF 99 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-~l~~~l---~~~~k~~IiVlNK~DL~~~~~~--~~~~~~~ 99 (298)
-|..+++.+.......++..+|.+|+|+|..++.+..+. .+...+ ...+.|+++|.||+||.....+ +...++.
T Consensus 53 iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a 132 (202)
T cd04120 53 IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFA 132 (202)
T ss_pred EEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHH
Confidence 588777777777777899999999999999876432221 111111 1246899999999999643322 1112222
Q ss_pred Hc-cCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 100 DQ-QNCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 100 ~~-~~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
++ .+..++.+||+++.|++++++++.+.+.
T Consensus 133 ~~~~~~~~~etSAktg~gV~e~F~~l~~~~~ 163 (202)
T cd04120 133 QQITGMRFCEASAKDNFNVDEIFLKLVDDIL 163 (202)
T ss_pred HhcCCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 22 2567899999999999999998876654
No 171
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.50 E-value=6.6e-07 Score=77.91 Aligned_cols=105 Identities=18% Similarity=0.115 Sum_probs=69.4
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCC--CCCCcEEEEEecCCCCChhh--HHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHP--FSSSRRILVLNKMDLASPTQ--FKEWI 96 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~--~~~k~~IiVlNK~DL~~~~~--~~~~~ 96 (298)
-|..++.......+...+..+|++|+|+|+..+.+..+ ..+..... ..+.|+++|.||+||..... .+...
T Consensus 54 i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~ 133 (215)
T cd04109 54 VWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHA 133 (215)
T ss_pred EEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHH
Confidence 46655556666667778999999999999987533221 11222211 12357899999999974321 12222
Q ss_pred HHHHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 97 TFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 97 ~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
...+..+.+++.+||+++.|++++++.+.+.+..
T Consensus 134 ~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 134 RFAQANGMESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2223345678999999999999999999876543
No 172
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.50 E-value=5.8e-07 Score=73.85 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=66.9
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh-hHHHHHHHHH
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT-QFKEWITFFD 100 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~-~~~~~~~~~~ 100 (298)
|..+...+........++.+|.+++|+|+..+.+... ..+..+....+.|+++|.||+|+.... ..+...++..
T Consensus 54 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~ 133 (161)
T cd01863 54 WDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR 133 (161)
T ss_pred EECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH
Confidence 3433335555556677899999999999876533211 112223223578999999999997332 2233333333
Q ss_pred ccCCCEEEEecCCCcCHHHHHHHHHH
Q 022351 101 QQNCPSFGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 101 ~~~~~vi~iSa~~~~gi~~L~~~l~~ 126 (298)
..+.+++.+|++++.|++++++.+.+
T Consensus 134 ~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 134 KHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred HcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 45678999999999999999988754
No 173
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.50 E-value=3.8e-07 Score=74.78 Aligned_cols=97 Identities=16% Similarity=0.106 Sum_probs=64.3
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhcc---CCCCCCcEEEEEecCCCCChhhHHHHHHHHH--
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNH---HPFSSSRRILVLNKMDLASPTQFKEWITFFD-- 100 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~---l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~-- 100 (298)
.||+ .+........+..+|++++|+|+..+..... ..+..+ ....+.|+++|+||+|+.......+..+.+.
T Consensus 50 ~~G~-~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~ 128 (158)
T cd00878 50 VGGQ-DKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLE 128 (158)
T ss_pred CCCC-hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChh
Confidence 4666 4444556678899999999999987522111 112221 1135789999999999976442333333332
Q ss_pred ---ccCCCEEEEecCCCcCHHHHHHHHH
Q 022351 101 ---QQNCPSFGVNSHNKDNVKEFLKFLQ 125 (298)
Q Consensus 101 ---~~~~~vi~iSa~~~~gi~~L~~~l~ 125 (298)
....+++.+||+++.|++++++.|.
T Consensus 129 ~~~~~~~~~~~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 129 KILGRRWHIQPCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred hccCCcEEEEEeeCCCCCCHHHHHHHHh
Confidence 1234689999999999999988875
No 174
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.49 E-value=3.6e-07 Score=82.84 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
-.++|+++|.+|+|||||+|+|++
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~ 26 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFN 26 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHc
Confidence 357999999999999999999985
No 175
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.49 E-value=1.9e-07 Score=78.06 Aligned_cols=103 Identities=17% Similarity=0.089 Sum_probs=65.0
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhccC-CCCCCcEEEEEecCCCCChhhH--HHHHHHHHc
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRNHH-PFSSSRRILVLNKMDLASPTQF--KEWITFFDQ 101 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~~l-~~~~k~~IiVlNK~DL~~~~~~--~~~~~~~~~ 101 (298)
-|..++..+.......++..+|++++|+|+.++.+... ..+...+ ...+.|+++|.||+|+.+.... ....++.+.
T Consensus 58 ~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~ 137 (169)
T cd01892 58 LREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRK 137 (169)
T ss_pred EEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHH
Confidence 35555545544444556899999999999987632211 1222222 1247899999999999643211 111122223
Q ss_pred cCC-CEEEEecCCCcCHHHHHHHHHHHH
Q 022351 102 QNC-PSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 102 ~~~-~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
.+. .++.+||+++.|++++++.+.+.+
T Consensus 138 ~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 138 LGLPPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred cCCCCCEEEEeccCccHHHHHHHHHHHh
Confidence 344 458999999999999999887654
No 176
>PRK04213 GTP-binding protein; Provisional
Probab=98.48 E-value=9.4e-07 Score=75.74 Aligned_cols=88 Identities=10% Similarity=0.025 Sum_probs=58.1
Q ss_pred hcCCCCeEEEEEeCCCCCCc-----------ccHHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHc--c----
Q 022351 42 RMPLVDIILEVRDARIPFSS-----------EFDQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQ--Q---- 102 (298)
Q Consensus 42 ~l~~aDlVl~VvDa~~p~~~-----------~~~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~--~---- 102 (298)
.+..+++|++|+|+...... .+..+...+...++|+++|+||+|+.+.. ..+++.+.+.. .
T Consensus 87 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 166 (201)
T PRK04213 87 NADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQW 166 (201)
T ss_pred hhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHHHHHHHHHHHhcCCcccccc
Confidence 45678999999998642111 11222333223579999999999997543 23344333321 0
Q ss_pred CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 103 NCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 103 ~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+.+++++||+++ |+++++++|.+.+.+
T Consensus 167 ~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 167 QDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred CCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 125899999999 999999999887655
No 177
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.48 E-value=1.2e-06 Score=73.43 Aligned_cols=105 Identities=23% Similarity=0.165 Sum_probs=69.2
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHh-ccCC---CCCCcEEEEEecCCCCChhhH---H-HHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLR-NHHP---FSSSRRILVLNKMDLASPTQF---K-EWI 96 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~-~~l~---~~~k~~IiVlNK~DL~~~~~~---~-~~~ 96 (298)
-|..+++.+........+..+|++++|+|+..+.+... ..+. .+.. ....|+++|.||+|+.+.... + ...
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~ 132 (170)
T cd04108 53 LWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAI 132 (170)
T ss_pred EEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHH
Confidence 57766656666666778999999999999976422211 1111 1111 123568999999999654221 1 111
Q ss_pred HHHHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 97 TFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 97 ~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
....+.+.+++.+||+++.|++++++.+.+.+.+
T Consensus 133 ~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 133 KLAAEMQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred HHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 2223345678999999999999999999887755
No 178
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.48 E-value=7.7e-07 Score=76.36 Aligned_cols=103 Identities=17% Similarity=0.074 Sum_probs=66.0
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCCh-hh--HHHHHHH
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASP-TQ--FKEWITF 98 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~-~~--~~~~~~~ 98 (298)
|..+++.+.......++..+|++++|+|+.++.+... ..+.......+.|+++|+||+|+.+. .. .+...+.
T Consensus 52 ~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~ 131 (198)
T cd04147 52 LDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALST 131 (198)
T ss_pred EECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHH
Confidence 5544434444444467899999999999986532221 12222222357999999999999753 21 1122222
Q ss_pred HH-ccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 99 FD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 99 ~~-~~~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
.. ..+..++.+||+++.|++++++++.+.+.
T Consensus 132 ~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 132 VELDWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred HHhhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 21 23457899999999999999999876543
No 179
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.48 E-value=9.8e-07 Score=72.47 Aligned_cols=101 Identities=16% Similarity=0.121 Sum_probs=68.0
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhccC--CCCCCcEEEEEecCCCCChhh--HHHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRNHH--PFSSSRRILVLNKMDLASPTQ--FKEWITFFD 100 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~~l--~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~ 100 (298)
-|..+.+.+........+..+|.+++|+|+..+.+... ..+...+ ...+.|+++|+||+|+..... .++.....+
T Consensus 55 i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~ 134 (162)
T cd04106 55 LWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAK 134 (162)
T ss_pred EeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHH
Confidence 35554446666666778999999999999976532211 1111111 124789999999999975322 222333344
Q ss_pred ccCCCEEEEecCCCcCHHHHHHHHHH
Q 022351 101 QQNCPSFGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 101 ~~~~~vi~iSa~~~~gi~~L~~~l~~ 126 (298)
..+++++.+|++++.|++++++.|.+
T Consensus 135 ~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 135 RLQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred HcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 55778999999999999999988753
No 180
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.48 E-value=8.3e-07 Score=73.58 Aligned_cols=103 Identities=14% Similarity=0.078 Sum_probs=68.1
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHh-cc--CCCCCCcEEEEEecCCCCChhh--HHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLR-NH--HPFSSSRRILVLNKMDLASPTQ--FKEWITFF 99 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~-~~--l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~ 99 (298)
-|..+.+.+........+..+|.+++|+|+.++.+... ..+. .. ....+.|+++|.||+|+..... .+...+..
T Consensus 55 i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~ 134 (166)
T cd04122 55 IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFA 134 (166)
T ss_pred EEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHH
Confidence 45544445666666778999999999999987533211 1111 11 1124678999999999965321 12223333
Q ss_pred HccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351 100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
+..+.+++.+||+++.|+++++..+...+
T Consensus 135 ~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 135 DENGLLFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred HHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34567899999999999999887776543
No 181
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.47 E-value=3.1e-07 Score=83.39 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhh
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
.++|+|+|.+|+|||||||+|++.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~ 27 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNS 27 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhc
Confidence 479999999999999999999964
No 182
>PRK12736 elongation factor Tu; Reviewed
Probab=98.47 E-value=1.1e-06 Score=83.69 Aligned_cols=102 Identities=13% Similarity=0.059 Sum_probs=71.8
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCc-EEEEEecCCCCChhhHH-----HHHHHHH
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMDLASPTQFK-----EWITFFD 100 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~-~IiVlNK~DL~~~~~~~-----~~~~~~~ 100 (298)
.-||| .++...+...+..+|++++|+|+..+......++..++...++| +|+++||+|+.+.+... +..+++.
T Consensus 81 DtPGh-~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~ 159 (394)
T PRK12736 81 DCPGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLS 159 (394)
T ss_pred ECCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 44888 57778888888999999999999987665555544444445777 57889999998543322 2223333
Q ss_pred ccC-----CCEEEEecCCCc--------CHHHHHHHHHHHHH
Q 022351 101 QQN-----CPSFGVNSHNKD--------NVKEFLKFLQAHVR 129 (298)
Q Consensus 101 ~~~-----~~vi~iSa~~~~--------gi~~L~~~l~~~i~ 129 (298)
..+ .+++++||.++. ++..|++.+.+.++
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 160 EYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 333 478999999973 57788888877664
No 183
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.47 E-value=1.1e-06 Score=72.94 Aligned_cols=103 Identities=19% Similarity=0.074 Sum_probs=68.1
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHh-cc--CCCCCCcEEEEEecCCCCChh--hHHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLR-NH--HPFSSSRRILVLNKMDLASPT--QFKEWITFF 99 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~-~~--l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~ 99 (298)
-|..++..+........+..+|++++|+|+.++.+-.. ..+. .+ ....+.|+++|.||+|+.... ..+...+..
T Consensus 56 l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~ 135 (167)
T cd01867 56 IWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALA 135 (167)
T ss_pred EEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHH
Confidence 45544445555556678999999999999976533111 1111 11 112468999999999997432 222233333
Q ss_pred HccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351 100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
+..+.+++.+||+++.|+++++..+.+.+
T Consensus 136 ~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 136 DEYGIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 34566889999999999999999887665
No 184
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.47 E-value=2.9e-08 Score=82.16 Aligned_cols=80 Identities=20% Similarity=0.140 Sum_probs=56.7
Q ss_pred cCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHH-HccCCCEEEEecCCCcCHHHHH
Q 022351 43 MPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFF-DQQNCPSFGVNSHNKDNVKEFL 121 (298)
Q Consensus 43 l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~-~~~~~~vi~iSa~~~~gi~~L~ 121 (298)
-.+.|+|+.|+|++.. .++..+...+.+.++|.++++||+|++....+.-..+.+ +..+.+++++||.+++|+++|+
T Consensus 76 ~~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~ 153 (156)
T PF02421_consen 76 SEKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELK 153 (156)
T ss_dssp HTSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH
T ss_pred hcCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHH
Confidence 3789999999999852 334444333335789999999999987654322111222 2357899999999999999998
Q ss_pred HHH
Q 022351 122 KFL 124 (298)
Q Consensus 122 ~~l 124 (298)
+.|
T Consensus 154 ~~I 156 (156)
T PF02421_consen 154 DAI 156 (156)
T ss_dssp HHH
T ss_pred hhC
Confidence 865
No 185
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.47 E-value=1.1e-06 Score=71.75 Aligned_cols=101 Identities=15% Similarity=0.070 Sum_probs=67.2
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITF 98 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~ 98 (298)
-|..+............+..+|.+++|+|+.++.+... ..+..... .+.|+++|+||+|+..... .+...+.
T Consensus 53 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~ 131 (162)
T cd04123 53 IWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEY 131 (162)
T ss_pred EEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHH
Confidence 45554444444455566889999999999876532111 11222221 3689999999999975322 2233333
Q ss_pred HHccCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351 99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAH 127 (298)
Q Consensus 99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~ 127 (298)
.+..+.+++.+|++++.|++++++++.+.
T Consensus 132 ~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 132 AKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 44456788999999999999999998654
No 186
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.47 E-value=5e-07 Score=75.29 Aligned_cols=103 Identities=13% Similarity=0.080 Sum_probs=68.2
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD 100 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~ 100 (298)
-|....+.+........+..+|++|+|+|...+.+..+ ..+... ..+.|+++|.||+|+..........+..+
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~piiiv~nK~Dl~~~~~~~~~~~~~~ 130 (166)
T cd00877 53 VWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CGNIPIVLCGNKVDIKDRKVKAKQITFHR 130 (166)
T ss_pred EEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhcccccCCHHHHHHHH
Confidence 45554444444434467889999999999986543222 112222 13799999999999974332122223333
Q ss_pred ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 101 QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
..+.+++.+||+++.|+++++++|.+.+.+
T Consensus 131 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 131 KKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred HcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 445679999999999999999999876643
No 187
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.46 E-value=9.3e-07 Score=88.30 Aligned_cols=101 Identities=16% Similarity=0.088 Sum_probs=70.6
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhh---HHHHHHHHHccCCC
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ---FKEWITFFDQQNCP 105 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~---~~~~~~~~~~~~~~ 105 (298)
||| ..+...+...+..+|.+|+|+|++.+..........++...+.|+++|+||+|+..... .+++.+.+.-...+
T Consensus 82 PGh-~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~ 160 (600)
T PRK05433 82 PGH-VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASD 160 (600)
T ss_pred CCc-HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcce
Confidence 677 56777888899999999999999987654433222222235789999999999864321 12222222111124
Q ss_pred EEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 106 SFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 106 vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
++++||+++.|+++|+++|.+.++.
T Consensus 161 vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 161 AVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred EEEEecCCCCCHHHHHHHHHHhCcc
Confidence 8999999999999999999887765
No 188
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.46 E-value=1.2e-07 Score=82.19 Aligned_cols=68 Identities=22% Similarity=0.209 Sum_probs=42.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhh-cchhhhh----------cCCc--c------ceeecCCCCeeeeeEEEEE-ccCCCEE
Q 022351 144 TVMLLGIPNVGKSALANSLHQI-GRITAAE----------KGKL--R------HATVSPQPGETKDIYSLKI-ASHPNIY 203 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~-~~~~~~~----------~~~~--~------~~~~~~~pg~T~~~~~~~~-~~~~~~~ 203 (298)
+|+++|.+|+|||||+|+|+.. +.+.... .++. + .......+|+|++.....+ ..+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 4799999999999999999743 2222100 0000 0 0011133788888765433 3445799
Q ss_pred EEeCCCCC
Q 022351 204 VLDTPGIL 211 (298)
Q Consensus 204 liDTPGi~ 211 (298)
|+||||..
T Consensus 81 liDTpG~~ 88 (208)
T cd04166 81 IADTPGHE 88 (208)
T ss_pred EEECCcHH
Confidence 99999974
No 189
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.46 E-value=5.8e-07 Score=73.74 Aligned_cols=101 Identities=17% Similarity=0.091 Sum_probs=67.3
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCCC--CCCcEEEEEecCCCCChh--hHHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHPF--SSSRRILVLNKMDLASPT--QFKEWITFF 99 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~~--~~k~~IiVlNK~DL~~~~--~~~~~~~~~ 99 (298)
-|..++..+....+...+..+|++++|+|+..+.+..+ ..+..+... .+.|+++|+||+|+.... ..+......
T Consensus 53 ~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~ 132 (161)
T cd01861 53 LWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKA 132 (161)
T ss_pred EEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHH
Confidence 46444446666677788999999999999986532211 112222111 358999999999995332 122222233
Q ss_pred HccCCCEEEEecCCCcCHHHHHHHHHH
Q 022351 100 DQQNCPSFGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~ 126 (298)
+..+.+++.+||+++.|++++.+++.+
T Consensus 133 ~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 133 KELNAMFIETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred HHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 344678899999999999999998865
No 190
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.45 E-value=1.4e-06 Score=74.26 Aligned_cols=101 Identities=10% Similarity=0.036 Sum_probs=67.8
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHH
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFD 100 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~ 100 (298)
.||+ .+........+..+|++++|+|+..+.+..+ ..+.... ..+.|+++|+||+|+..... .++......
T Consensus 57 t~G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~ 134 (191)
T cd04112 57 TAGQ-ERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGERLAK 134 (191)
T ss_pred CCCc-HHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHHHHH
Confidence 3555 4454555678899999999999976532111 1122221 23689999999999964321 122222223
Q ss_pred ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 101 QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
..+.+++.+||+++.|+++++..+.+.+.+
T Consensus 135 ~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 135 EYGVPFMETSAKTGLNVELAFTAVAKELKH 164 (191)
T ss_pred HcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 446689999999999999999999887765
No 191
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.44 E-value=9.2e-07 Score=88.24 Aligned_cols=99 Identities=16% Similarity=0.114 Sum_probs=70.5
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHH-HhccCCCCCCcEEEEEecCCCCChh--h-HHHHHHHHHccC-
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQ-LRNHHPFSSSRRILVLNKMDLASPT--Q-FKEWITFFDQQN- 103 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~-l~~~l~~~~k~~IiVlNK~DL~~~~--~-~~~~~~~~~~~~- 103 (298)
||| .++...+...+..+|.+|+|+|++.+....... +...+ ..+.|+++|+||+|+.... . .+++.+.+ ...
T Consensus 78 PG~-~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~~~ipiIiViNKiDl~~~~~~~~~~el~~~l-g~~~ 154 (595)
T TIGR01393 78 PGH-VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-ENDLEIIPVINKIDLPSADPERVKKEIEEVI-GLDA 154 (595)
T ss_pred CCc-HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-HcCCCEEEEEECcCCCccCHHHHHHHHHHHh-CCCc
Confidence 566 667788888999999999999999875544322 22222 2578999999999986432 1 12333333 111
Q ss_pred CCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 104 CPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 104 ~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+++++||+++.|+++|++.|.+.++.
T Consensus 155 ~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 155 SEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred ceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 248999999999999999999887764
No 192
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.44 E-value=6.6e-07 Score=74.34 Aligned_cols=89 Identities=19% Similarity=0.266 Sum_probs=60.8
Q ss_pred HHHHhcCCCCeEEEEEeCCCCC-----CcccH------HHhccCC------CCCCcEEEEEecCCCCChhhHHHHH--HH
Q 022351 38 AIADRMPLVDIILEVRDARIPF-----SSEFD------QLRNHHP------FSSSRRILVLNKMDLASPTQFKEWI--TF 98 (298)
Q Consensus 38 ~i~~~l~~aDlVl~VvDa~~p~-----~~~~~------~l~~~l~------~~~k~~IiVlNK~DL~~~~~~~~~~--~~ 98 (298)
.+...+..+|++++|+|+..+. ..... .+..... ..++|+++|+||+|+........+. ..
T Consensus 67 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~ 146 (176)
T cd01881 67 QFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVREL 146 (176)
T ss_pred HHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHH
Confidence 4456678899999999998763 22111 1111111 1378999999999998766555441 22
Q ss_pred HHccCCCEEEEecCCCcCHHHHHHHHHH
Q 022351 99 FDQQNCPSFGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~ 126 (298)
....+.+++.+||+++.|++++++.+..
T Consensus 147 ~~~~~~~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 147 ALEEGAEVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred hcCCCCCEEEEehhhhcCHHHHHHHHHh
Confidence 2234567999999999999999988753
No 193
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.44 E-value=5e-07 Score=75.19 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=37.5
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCC-CEEEEeCCCC
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP-NIYVLDTPGI 210 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~liDTPGi 210 (298)
.++++++|.||||||||+|++.+ ........+..|.+.....+.+.... .+.|+||||-
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 63 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTD----------KRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 63 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHc----------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 46899999999999999999983 11111122333444333334343222 4789999994
No 194
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.44 E-value=4.9e-07 Score=74.28 Aligned_cols=59 Identities=20% Similarity=0.329 Sum_probs=39.5
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGIL 211 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~ 211 (298)
++++++|.+|||||||+|+|.. ........+.+|.+.....+.+... -.+.++||||..
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTD----------DTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHc----------CCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCch
Confidence 3789999999999999999983 1122234455665555444433321 247899999954
No 195
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.44 E-value=1.2e-06 Score=83.08 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=64.4
Q ss_pred HHHHHhcCCCCeEEEEEeCCCC----CCcccHHHhccCCC-----CCCcEEEEEecCCCCChhhHHHHHHHHH-ccC--C
Q 022351 37 RAIADRMPLVDIILEVRDARIP----FSSEFDQLRNHHPF-----SSSRRILVLNKMDLASPTQFKEWITFFD-QQN--C 104 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p----~~~~~~~l~~~l~~-----~~k~~IiVlNK~DL~~~~~~~~~~~~~~-~~~--~ 104 (298)
..+.+.++++|++++|+|+... .......+.+.+.. .++|.++|+||+|+.+...+.+.++.+. ..+ .
T Consensus 229 ~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~ 308 (390)
T PRK12298 229 IRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEG 308 (390)
T ss_pred HHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCC
Confidence 3455678999999999998721 11111222222111 3689999999999987655544444432 223 3
Q ss_pred CEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 105 PSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 105 ~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+++++||+++.|+++|++.|.+.+++
T Consensus 309 ~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 309 PVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 68999999999999999999888765
No 196
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.43 E-value=4e-07 Score=73.27 Aligned_cols=60 Identities=37% Similarity=0.432 Sum_probs=43.5
Q ss_pred EEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc--cCCCEEEEeCCCCCCCCCCC
Q 022351 147 LLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA--SHPNIYVLDTPGILPPEIHD 217 (298)
Q Consensus 147 vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~--~~~~~~liDTPGi~~~~~~~ 217 (298)
++|.+|+|||||+|+|.+ ......+..+++|......... ....+.++||||+.......
T Consensus 1 i~G~~gsGKstl~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~ 62 (163)
T cd00880 1 LFGRTNAGKSSLLNALLG-----------QEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLG 62 (163)
T ss_pred CcCCCCCCHHHHHHHHhC-----------ccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccch
Confidence 589999999999999983 2334466777777776654332 24579999999998765433
No 197
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.43 E-value=1e-06 Score=75.04 Aligned_cols=104 Identities=13% Similarity=0.048 Sum_probs=68.8
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HH----HhccCC--CCCCcEEEEEecCCCCChhhH--HHHHH
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQ----LRNHHP--FSSSRRILVLNKMDLASPTQF--KEWIT 97 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~----l~~~l~--~~~k~~IiVlNK~DL~~~~~~--~~~~~ 97 (298)
|..+.+.+........+..+|++|+|+|...+.+... .. +..... ..+.|+++|.||+|+.....+ ....+
T Consensus 52 ~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~ 131 (190)
T cd04144 52 LDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAA 131 (190)
T ss_pred EECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHH
Confidence 6655546665555678999999999999876532211 11 211111 146899999999999643221 12222
Q ss_pred HHHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 98 FFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 98 ~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
..+..+.+++.+||+++.|+++++..+.+.+.+
T Consensus 132 ~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~ 164 (190)
T cd04144 132 LARRLGCEFIEASAKTNVNVERAFYTLVRALRQ 164 (190)
T ss_pred HHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 223346689999999999999999999876654
No 198
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.42 E-value=5.8e-07 Score=73.91 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=37.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCC-CEEEEeCCCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP-NIYVLDTPGI 210 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~liDTPGi 210 (298)
++++++|.+|||||||+|+|++ ........+.+|.+.....+.+.... .+.|+||||-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~----------~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~ 60 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVK----------NEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHc----------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCch
Confidence 5899999999999999999983 11112234444443333333333221 4779999994
No 199
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.42 E-value=1.4e-06 Score=83.37 Aligned_cols=91 Identities=15% Similarity=0.273 Sum_probs=60.9
Q ss_pred HHHHHhcCCCCeEEEEEeCCCCC--Cc--ccHHHhccCC-----CCCCcEEEEEecCCCCChh-hHHHHHHHHHccCCCE
Q 022351 37 RAIADRMPLVDIILEVRDARIPF--SS--EFDQLRNHHP-----FSSSRRILVLNKMDLASPT-QFKEWITFFDQQNCPS 106 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p~--~~--~~~~l~~~l~-----~~~k~~IiVlNK~DL~~~~-~~~~~~~~~~~~~~~v 106 (298)
....+.+++++++++|+|+.... .. ....+...+. ..++|.+||+||+||.... ..+.+.+ ..+.++
T Consensus 228 ~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~---~l~~~i 304 (424)
T PRK12297 228 HQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKE---KLGPKV 304 (424)
T ss_pred HHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHH---HhCCcE
Confidence 34456678899999999996431 11 1112222211 1479999999999984332 2223322 234679
Q ss_pred EEEecCCCcCHHHHHHHHHHHHHh
Q 022351 107 FGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 107 i~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+++||+++.|+++|++++.+.+.+
T Consensus 305 ~~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 305 FPISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999887765
No 200
>PRK11058 GTPase HflX; Provisional
Probab=98.42 E-value=2.3e-06 Score=82.11 Aligned_cols=97 Identities=18% Similarity=0.161 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH----HHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCC-
Q 022351 31 HMAAATRAIADRMPLVDIILEVRDARIPFSSEFD----QLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCP- 105 (298)
Q Consensus 31 hm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~----~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~- 105 (298)
...+.+....+.+..+|++|+|+|+..|....+. .+...+...++|+++|+||+|+.+.... ..+.. ..+.+
T Consensus 262 ~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~--~~~~~-~~~~~~ 338 (426)
T PRK11058 262 DLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP--RIDRD-EENKPI 338 (426)
T ss_pred HHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH--HHHHH-hcCCCc
Confidence 3334455566778999999999999887543332 1222222347899999999999754211 11111 23444
Q ss_pred EEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 106 SFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 106 vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
++.+||+++.|+++|++.|.+.+..
T Consensus 339 ~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 339 RVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 5889999999999999999887643
No 201
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.42 E-value=1.4e-06 Score=84.93 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=66.4
Q ss_pred HhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHH----HHHHHHHc-cCCCEEEEecCCCc
Q 022351 41 DRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFK----EWITFFDQ-QNCPSFGVNSHNKD 115 (298)
Q Consensus 41 ~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~----~~~~~~~~-~~~~vi~iSa~~~~ 115 (298)
..+..+|++++|+|+..+.+..+..+...+...++|+++|+||+||.+.+... ...+.+.. ...+++++||+++.
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~ 368 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGR 368 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCC
Confidence 46789999999999998877665555444334689999999999998643221 12222222 23478999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 022351 116 NVKEFLKFLQAHVRN 130 (298)
Q Consensus 116 gi~~L~~~l~~~i~~ 130 (298)
|++++++.+.+.+..
T Consensus 369 gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 369 AVDKLVPALETALES 383 (472)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999887765
No 202
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.42 E-value=1.7e-06 Score=73.53 Aligned_cols=87 Identities=14% Similarity=0.059 Sum_probs=62.6
Q ss_pred cCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHH----HHHHccCCCEEEEecCCCcCHH
Q 022351 43 MPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWI----TFFDQQNCPSFGVNSHNKDNVK 118 (298)
Q Consensus 43 l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~----~~~~~~~~~vi~iSa~~~~gi~ 118 (298)
.+.++++++|+|+..+.......+..++...+.|+++++||+|+.+....+... +.+.....+++++||+++.|++
T Consensus 104 ~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~ 183 (196)
T PRK00454 104 RENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGID 183 (196)
T ss_pred CccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHH
Confidence 345578999999887766554444444434578999999999998765433322 3332225689999999999999
Q ss_pred HHHHHHHHHHH
Q 022351 119 EFLKFLQAHVR 129 (298)
Q Consensus 119 ~L~~~l~~~i~ 129 (298)
++.+.|.+.+.
T Consensus 184 ~l~~~i~~~~~ 194 (196)
T PRK00454 184 ELRAAIAKWLA 194 (196)
T ss_pred HHHHHHHHHhc
Confidence 99999987764
No 203
>PRK13768 GTPase; Provisional
Probab=98.42 E-value=7.6e-07 Score=79.71 Aligned_cols=93 Identities=16% Similarity=0.171 Sum_probs=62.7
Q ss_pred HHHHHhcCC--CCeEEEEEeCCCCCCcccHHHhccCC-----CCCCcEEEEEecCCCCChhhHHHHHHHH----------
Q 022351 37 RAIADRMPL--VDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVLNKMDLASPTQFKEWITFF---------- 99 (298)
Q Consensus 37 ~~i~~~l~~--aDlVl~VvDa~~p~~~~~~~l~~~l~-----~~~k~~IiVlNK~DL~~~~~~~~~~~~~---------- 99 (298)
+.+.+.+.. .+++++|+|++.+....+.....++. ..++|+++|+||+|+.+..+.+....++
T Consensus 118 ~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l 197 (253)
T PRK13768 118 RKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEEL 197 (253)
T ss_pred HHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHH
Confidence 334444444 89999999998755444332222211 3589999999999998765443322222
Q ss_pred ------------------HccC--CCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 100 ------------------DQQN--CPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 100 ------------------~~~~--~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
++.+ .+++++|++++.|+++|+++|.+.++
T Consensus 198 ~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 198 KLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 1223 47899999999999999999987653
No 204
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.41 E-value=1.9e-06 Score=71.17 Aligned_cols=102 Identities=19% Similarity=0.068 Sum_probs=66.8
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHH-hccC--CCCCCcEEEEEecCCCCChh--hHHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQL-RNHH--PFSSSRRILVLNKMDLASPT--QFKEWITFF 99 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l-~~~l--~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~ 99 (298)
-|..+.+.+........+..++.+++|+|+.++.+..+ ..+ ..+. ...+.|+++|.||+|+.... ..+......
T Consensus 56 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~ 135 (165)
T cd01868 56 IWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFA 135 (165)
T ss_pred EEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHH
Confidence 45544445555556678899999999999986533221 111 1111 11358999999999996532 122223333
Q ss_pred HccCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351 100 DQQNCPSFGVNSHNKDNVKEFLKFLQAH 127 (298)
Q Consensus 100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~ 127 (298)
...+.+++.+||+++.|++++++.+.+.
T Consensus 136 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 136 EKNGLSFIETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred HHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3446679999999999999999988654
No 205
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.40 E-value=1.6e-06 Score=73.74 Aligned_cols=105 Identities=16% Similarity=0.078 Sum_probs=68.1
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhccCC--CCCCcEEEEEecCCCCChh----h--HHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRNHHP--FSSSRRILVLNKMDLASPT----Q--FKEWI 96 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~~l~--~~~k~~IiVlNK~DL~~~~----~--~~~~~ 96 (298)
-|..+...+........+..+|++++|+|...+.+..+ ..+...+. ..+.|+++|.||+|+.+.. . .++..
T Consensus 54 i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~ 133 (193)
T cd04118 54 IWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQ 133 (193)
T ss_pred EEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHH
Confidence 46554444444444567889999999999976532211 11222111 2368999999999986432 1 12222
Q ss_pred HHHHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 97 TFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 97 ~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
++....+.+++.+||+++.|++++++.+.+.+-.
T Consensus 134 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 134 DFADEIKAQHFETSSKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred HHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2233445678999999999999999999877644
No 206
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.40 E-value=6.7e-07 Score=73.57 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
++|+++|.+|||||||+|++++
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~ 22 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCE 22 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999999983
No 207
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.40 E-value=1.9e-06 Score=74.89 Aligned_cols=105 Identities=21% Similarity=0.114 Sum_probs=69.2
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITF 98 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~ 98 (298)
-|..+.+.+........+..+|.+++|+|..++.+..+ ..+.........|+++|.||+|+.+... .+...++
T Consensus 56 i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~ 135 (211)
T cd04111 56 LWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKL 135 (211)
T ss_pred EEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHH
Confidence 45544445565566678999999999999987532211 1122221123467789999999975321 1122222
Q ss_pred HHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+..+.+++.+||+++.|++++++.|.+.+.+
T Consensus 136 ~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~ 167 (211)
T cd04111 136 AKDLGMKYIETSARTGDNVEEAFELLTQEIYE 167 (211)
T ss_pred HHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 23445789999999999999999999887665
No 208
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.40 E-value=1.4e-06 Score=72.47 Aligned_cols=103 Identities=16% Similarity=0.071 Sum_probs=68.3
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhc-cC--CCCCCcEEEEEecCCCCChhh--HHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRN-HH--PFSSSRRILVLNKMDLASPTQ--FKEWITFF 99 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~-~l--~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~ 99 (298)
-|..++..+........++.+|++++|+|+.++.+... ..+.. +. ...+.|+++|.||+|+..... .+....+.
T Consensus 57 i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~ 136 (168)
T cd01866 57 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFA 136 (168)
T ss_pred EEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHH
Confidence 45544445555556678899999999999986432211 11111 11 124689999999999974321 22233334
Q ss_pred HccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351 100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
...+.+++.+||.++.|+++++..+...+
T Consensus 137 ~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 137 KEHGLIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 45567899999999999999998887654
No 209
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.40 E-value=1e-06 Score=71.20 Aligned_cols=96 Identities=20% Similarity=0.102 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhc-cCC--CCCCcEEEEEecCCCC-Chh-hHHHHHHHHHcc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRN-HHP--FSSSRRILVLNKMDLA-SPT-QFKEWITFFDQQ 102 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~-~l~--~~~k~~IiVlNK~DL~-~~~-~~~~~~~~~~~~ 102 (298)
||+ ..........++++|++++|+|+..+..... ..+.. +.. ..+.|+++++||+|+. +.. ..+...+.....
T Consensus 57 ~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 135 (159)
T cd00154 57 AGQ-ERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKEN 135 (159)
T ss_pred CCh-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHc
Confidence 454 5555667788999999999999986432111 11211 111 1368999999999996 222 223333334345
Q ss_pred CCCEEEEecCCCcCHHHHHHHHH
Q 022351 103 NCPSFGVNSHNKDNVKEFLKFLQ 125 (298)
Q Consensus 103 ~~~vi~iSa~~~~gi~~L~~~l~ 125 (298)
+.+++.+|+.++.|+++++++|.
T Consensus 136 ~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 136 GLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred CCeEEEEecCCCCCHHHHHHHHh
Confidence 67899999999999999988874
No 210
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.40 E-value=4.4e-07 Score=82.53 Aligned_cols=62 Identities=27% Similarity=0.442 Sum_probs=47.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE--cc----------CC------C
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI--AS----------HP------N 201 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~--~~----------~~------~ 201 (298)
...+++++||.|||||||++|+|.. ..+..+++|.+|.++..-++ .. ++ .
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~------------~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~ 85 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTK------------SKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAF 85 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhc------------CCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeee
Confidence 4457999999999999999999983 23448999999999874332 11 11 4
Q ss_pred EEEEeCCCCCCC
Q 022351 202 IYVLDTPGILPP 213 (298)
Q Consensus 202 ~~liDTPGi~~~ 213 (298)
+.++|..|+...
T Consensus 86 l~v~DIAGLvkG 97 (391)
T KOG1491|consen 86 LTVYDIAGLVKG 97 (391)
T ss_pred EEEEeecccccC
Confidence 889999999764
No 211
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.39 E-value=2.3e-07 Score=78.30 Aligned_cols=102 Identities=17% Similarity=0.180 Sum_probs=68.0
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC--cccHHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFS--SEFDQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD 100 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~--~~~~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~ 100 (298)
-|..|+.......+..++..+|.||+|+|+.++.. .....+..++. ..++|+++++||.|+.+....++..+.+.
T Consensus 62 ~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~ 141 (175)
T PF00025_consen 62 IWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLG 141 (175)
T ss_dssp EEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTT
T ss_pred EEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhh
Confidence 45544434444455578899999999999986531 11122333322 24799999999999875433344444332
Q ss_pred ------ccCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351 101 ------QQNCPSFGVNSHNKDNVKEFLKFLQAH 127 (298)
Q Consensus 101 ------~~~~~vi~iSa~~~~gi~~L~~~l~~~ 127 (298)
...+.++.+||.+|+|+.+.+++|.+.
T Consensus 142 l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 142 LEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp GGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred hhhcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 123468889999999999999999765
No 212
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.39 E-value=1e-06 Score=71.32 Aligned_cols=98 Identities=18% Similarity=0.214 Sum_probs=65.7
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH--
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD-- 100 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~-- 100 (298)
+||+ .+....+...+..+|.+++|+|+..+..... ..+..++. ..++|+++|+||+|+.+........+.+.
T Consensus 51 ~~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~ 129 (159)
T cd04159 51 LGGQ-PRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLK 129 (159)
T ss_pred CCCC-HhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcc
Confidence 3555 5555666788999999999999986422111 12222221 24789999999999976544444433331
Q ss_pred ---ccCCCEEEEecCCCcCHHHHHHHHHH
Q 022351 101 ---QQNCPSFGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 101 ---~~~~~vi~iSa~~~~gi~~L~~~l~~ 126 (298)
....+++.+|++++.|++++++++.+
T Consensus 130 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 130 SITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred cccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 12346799999999999999988853
No 213
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.39 E-value=7.6e-07 Score=73.36 Aligned_cols=101 Identities=16% Similarity=0.087 Sum_probs=66.8
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-H----HHhccCCCCCCcEEEEEecCCCCChhhH--HHHHHHH
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-D----QLRNHHPFSSSRRILVLNKMDLASPTQF--KEWITFF 99 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~----~l~~~l~~~~k~~IiVlNK~DL~~~~~~--~~~~~~~ 99 (298)
|...++.+.......++..+|.+++|+|..++.+-.+ . .+.......++|+++|.||+|+.+...+ .......
T Consensus 54 ~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~ 133 (163)
T cd04176 54 LDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALA 133 (163)
T ss_pred EECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHH
Confidence 7766556666666677899999999999987532111 1 1222211257899999999999643221 1111222
Q ss_pred HccCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351 100 DQQNCPSFGVNSHNKDNVKEFLKFLQAH 127 (298)
Q Consensus 100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~ 127 (298)
...+.+++.+||+++.|+++++.++.+.
T Consensus 134 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 134 EEWGCPFMETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred HHhCCEEEEecCCCCCCHHHHHHHHHHh
Confidence 2345678999999999999999888643
No 214
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.39 E-value=1.2e-06 Score=84.80 Aligned_cols=87 Identities=20% Similarity=0.343 Sum_probs=65.0
Q ss_pred HHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCc
Q 022351 36 TRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKD 115 (298)
Q Consensus 36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~ 115 (298)
++.....+..+|++++|+|+..+.+..+..+... ..++|+++|+||+|+.+..... ...+.+++.+||+++.
T Consensus 285 i~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~ 356 (449)
T PRK05291 285 IERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE------EENGKPVIRISAKTGE 356 (449)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh------hccCCceEEEEeeCCC
Confidence 3445667899999999999988765443333222 3578999999999997654322 2334578999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 022351 116 NVKEFLKFLQAHVRN 130 (298)
Q Consensus 116 gi~~L~~~l~~~i~~ 130 (298)
|+++|++.+.+.+..
T Consensus 357 GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 357 GIDELREAIKELAFG 371 (449)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999877643
No 215
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.39 E-value=2.1e-06 Score=71.08 Aligned_cols=101 Identities=17% Similarity=0.148 Sum_probs=66.0
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHh---ccCCCCCCcEEEEEecCCCCChhhH-HHHHHHHH-
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLR---NHHPFSSSRRILVLNKMDLASPTQF-KEWITFFD- 100 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~---~~l~~~~k~~IiVlNK~DL~~~~~~-~~~~~~~~- 100 (298)
|..+.+..........+..+|++++|+|++++.+... ..+. ......+.|+++|.||+|+.+...+ ....+.+.
T Consensus 61 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~ 140 (169)
T cd04114 61 WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSD 140 (169)
T ss_pred EECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHH
Confidence 4444335566666788999999999999876532211 1121 1112246889999999999754321 22223332
Q ss_pred ccCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351 101 QQNCPSFGVNSHNKDNVKEFLKFLQAH 127 (298)
Q Consensus 101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~ 127 (298)
.....++.+||+++.|++++++.+.+.
T Consensus 141 ~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 141 AQDMYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred HcCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 233578999999999999999988754
No 216
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.39 E-value=6.8e-07 Score=72.32 Aligned_cols=58 Identities=19% Similarity=0.263 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCcccee-ecCCCCeeeeeEEEEEcc-CCCEEEEeCCCCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHAT-VSPQPGETKDIYSLKIAS-HPNIYVLDTPGIL 211 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~-~~~~pg~T~~~~~~~~~~-~~~~~liDTPGi~ 211 (298)
++|+++|.+|||||||+|+|.. .+... ..+..|.+.....+.... .-.+.++||||..
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~-----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVD-----------GKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE 60 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHh-----------CcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChH
Confidence 3789999999999999999983 11111 123333333333333221 1247899999973
No 217
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.39 E-value=8.2e-07 Score=73.33 Aligned_cols=60 Identities=22% Similarity=0.253 Sum_probs=36.5
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGILP 212 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~~ 212 (298)
.+++++|.||||||||+|+|.+ ........+..|++.....+.+... -.+.++||||...
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 64 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTR----------NEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQER 64 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhc----------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHH
Confidence 5899999999999999999983 1111122233332222223333222 1478999999643
No 218
>PLN03118 Rab family protein; Provisional
Probab=98.38 E-value=1.8e-06 Score=74.78 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=70.1
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhc----cCCCCCCcEEEEEecCCCCChhhH--HHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRN----HHPFSSSRRILVLNKMDLASPTQF--KEWIT 97 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~----~l~~~~k~~IiVlNK~DL~~~~~~--~~~~~ 97 (298)
-|..+.+.+........+..+|.+++|+|+..+.+..+. .+.. +....+.|+++|.||+|+.....+ +....
T Consensus 66 l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~ 145 (211)
T PLN03118 66 IWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMA 145 (211)
T ss_pred EEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH
Confidence 344444466666667789999999999999865332221 1111 111245789999999999653221 22233
Q ss_pred HHHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 98 FFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 98 ~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.....+..++.+||+++.|++++++.|.+.+.+
T Consensus 146 ~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 146 LAKEHGCLFLECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 333456678999999999999999999877654
No 219
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.38 E-value=1.9e-06 Score=74.08 Aligned_cols=102 Identities=15% Similarity=0.058 Sum_probs=68.7
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHH-hccCC-CCCCcEEEEEecCCCCChhh--HHHHHHHHHcc
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQL-RNHHP-FSSSRRILVLNKMDLASPTQ--FKEWITFFDQQ 102 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l-~~~l~-~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~ 102 (298)
+||+ .+........+..+|.+++|+|+.++.+... ..+ ..+.. ....|+++|.||+|+.+... .+.........
T Consensus 62 ~~G~-~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~ 140 (199)
T cd04110 62 TAGQ-ERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQM 140 (199)
T ss_pred CCCc-hhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHc
Confidence 4454 4555556678999999999999987533211 111 11111 24689999999999975422 23333333345
Q ss_pred CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 103 NCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 103 ~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+.+++.+||+++.|++++++++.+.+-.
T Consensus 141 ~~~~~e~Sa~~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 141 GISLFETSAKENINVEEMFNCITELVLR 168 (199)
T ss_pred CCEEEEEECCCCcCHHHHHHHHHHHHHH
Confidence 6789999999999999999998876654
No 220
>CHL00071 tufA elongation factor Tu
Probab=98.38 E-value=1.8e-06 Score=82.66 Aligned_cols=89 Identities=12% Similarity=-0.031 Sum_probs=63.6
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCc-EEEEEecCCCCChhhHH-----HHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMDLASPTQFK-----EWITFF 99 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~-~IiVlNK~DL~~~~~~~-----~~~~~~ 99 (298)
..-||| .++.+.+...+..+|++++|+|+..+......++..++...++| +|+++||+|+.+.+... +..+++
T Consensus 80 iDtPGh-~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l 158 (409)
T CHL00071 80 VDCPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELL 158 (409)
T ss_pred EECCCh-HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 455898 57888888899999999999999987766655555544446778 66889999998654321 233334
Q ss_pred HccC-----CCEEEEecCCCc
Q 022351 100 DQQN-----CPSFGVNSHNKD 115 (298)
Q Consensus 100 ~~~~-----~~vi~iSa~~~~ 115 (298)
+..+ .+++++||.++.
T Consensus 159 ~~~~~~~~~~~ii~~Sa~~g~ 179 (409)
T CHL00071 159 SKYDFPGDDIPIVSGSALLAL 179 (409)
T ss_pred HHhCCCCCcceEEEcchhhcc
Confidence 3333 478999998775
No 221
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.38 E-value=4.9e-07 Score=75.23 Aligned_cols=100 Identities=13% Similarity=0.020 Sum_probs=64.4
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC-CCCCcEEEEEecCCCCChhhHHHHHHHH---
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP-FSSSRRILVLNKMDLASPTQFKEWITFF--- 99 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~-~~~k~~IiVlNK~DL~~~~~~~~~~~~~--- 99 (298)
-|..+.+.+.......++..+|.+++|+|+.++..... ..+..++. ..++|+++|.||+|+..........+.+
T Consensus 48 i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~ 127 (164)
T cd04162 48 LLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELE 127 (164)
T ss_pred EEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCCh
Confidence 45544445555556678999999999999987542111 12233322 2579999999999986544333322222
Q ss_pred ---HccCCCEEEEecCC------CcCHHHHHHHHH
Q 022351 100 ---DQQNCPSFGVNSHN------KDNVKEFLKFLQ 125 (298)
Q Consensus 100 ---~~~~~~vi~iSa~~------~~gi~~L~~~l~ 125 (298)
++.++.++.+||++ ++|++++++.+.
T Consensus 128 ~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 128 PIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred hhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence 23355678888887 888888877664
No 222
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.38 E-value=1.9e-06 Score=70.83 Aligned_cols=97 Identities=20% Similarity=0.048 Sum_probs=66.8
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHH-hcc--CCCCCCcEEEEEecCCCCChhh--HHHHHHHHHcc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQL-RNH--HPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQ 102 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l-~~~--l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~ 102 (298)
||+ .+........+..+|.+++|+|+..+.+..+ ..+ ... ....+.|+++|.||+|+..... .+.........
T Consensus 57 ~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~ 135 (161)
T cd04113 57 AGQ-ERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQEN 135 (161)
T ss_pred cch-HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHc
Confidence 454 5555666678899999999999987543222 112 111 2235789999999999975321 22333344445
Q ss_pred CCCEEEEecCCCcCHHHHHHHHHH
Q 022351 103 NCPSFGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 103 ~~~vi~iSa~~~~gi~~L~~~l~~ 126 (298)
+.+++.+||+++.|++++++.+.+
T Consensus 136 ~~~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 136 GLLFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999998864
No 223
>PLN03118 Rab family protein; Provisional
Probab=98.37 E-value=7.9e-07 Score=77.08 Aligned_cols=61 Identities=25% Similarity=0.329 Sum_probs=41.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGILP 212 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~~ 212 (298)
..++|+++|.+|||||||+|+|+. ......++..|++..+..+.+.+. ..+.|+||||...
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~-----------~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 74 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFIS-----------SSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER 74 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHh-----------CCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchh
Confidence 457999999999999999999983 222334445555444444444322 2478999999644
No 224
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.36 E-value=5.1e-07 Score=84.41 Aligned_cols=60 Identities=22% Similarity=0.303 Sum_probs=45.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccC----------------CCEEE
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASH----------------PNIYV 204 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~----------------~~~~l 204 (298)
+++++||.||||||||+|+|.+ .....++++|+||.++.. +.+.+. ..+.+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~-----------~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~ 71 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTN-----------LLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEF 71 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhC-----------CCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEE
Confidence 5899999999999999999983 233277888999887663 333332 14889
Q ss_pred EeCCCCCCC
Q 022351 205 LDTPGILPP 213 (298)
Q Consensus 205 iDTPGi~~~ 213 (298)
+|.||+...
T Consensus 72 ~DiaGlv~g 80 (368)
T TIGR00092 72 VDIAGLVGG 80 (368)
T ss_pred Eeccccccc
Confidence 999999874
No 225
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.36 E-value=6e-06 Score=64.95 Aligned_cols=87 Identities=21% Similarity=0.285 Sum_probs=71.4
Q ss_pred HHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC-CEEEEecCCCc
Q 022351 37 RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC-PSFGVNSHNKD 115 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~-~vi~iSa~~~~ 115 (298)
..+.-....+|++++|..+.+|.+...+-+... ..+|+|-|++|+||..+++++.....+.+.|. ++|.+|+..+.
T Consensus 56 ~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~---~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~ 132 (148)
T COG4917 56 HALITTLQDADVIIYVHAANDPESRFPPGFLDI---GVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQ 132 (148)
T ss_pred HHHHHHhhccceeeeeecccCccccCCcccccc---cccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcc
Confidence 345566889999999999999887777766664 56789999999999977777766666766665 78999999999
Q ss_pred CHHHHHHHHHH
Q 022351 116 NVKEFLKFLQA 126 (298)
Q Consensus 116 gi~~L~~~l~~ 126 (298)
|+++|+++|..
T Consensus 133 gv~~l~~~L~~ 143 (148)
T COG4917 133 GVEELVDYLAS 143 (148)
T ss_pred cHHHHHHHHHh
Confidence 99999998864
No 226
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.36 E-value=9.2e-07 Score=73.60 Aligned_cols=58 Identities=21% Similarity=0.361 Sum_probs=38.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGIL 211 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~ 211 (298)
...++++++|.+|||||||+|.|.+ .......+..|.+.. .+... +..+.++||||..
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~-----------~~~~~~~~t~g~~~~--~i~~~-~~~~~~~D~~G~~ 69 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLAS-----------EDISHITPTQGFNIK--TVQSD-GFKLNVWDIGGQR 69 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhc-----------CCCcccCCCCCcceE--EEEEC-CEEEEEEECCCCH
Confidence 4468999999999999999999983 222233344443322 22222 3357899999964
No 227
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.35 E-value=2e-06 Score=70.73 Aligned_cols=100 Identities=17% Similarity=0.074 Sum_probs=66.4
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHH-hccCC--CCCCcEEEEEecCCCCChh--hHHHHHHHHHc
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQL-RNHHP--FSSSRRILVLNKMDLASPT--QFKEWITFFDQ 101 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l-~~~l~--~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~ 101 (298)
.||+ .+........+..+|.+++|+|+..+.+-.. ..+ ..+.. ....|++++.||+|+.+.. ..+........
T Consensus 57 ~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~ 135 (163)
T cd01860 57 TAGQ-ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADE 135 (163)
T ss_pred CCch-HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHH
Confidence 4565 4455555567889999999999986532211 111 11111 1467899999999987322 22233333444
Q ss_pred cCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351 102 QNCPSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
.+.+++.+||+++.|++++++.+.+.+
T Consensus 136 ~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 136 NGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999987653
No 228
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.35 E-value=1.2e-06 Score=72.56 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHHh
Q 022351 142 TVTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~ 163 (298)
.++|+++|.+|+|||||+|++.
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~ 24 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFK 24 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999997
No 229
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.35 E-value=1.3e-06 Score=72.51 Aligned_cols=102 Identities=17% Similarity=0.043 Sum_probs=65.6
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC--CCCCcEEEEEecCCCCChhhH---HHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP--FSSSRRILVLNKMDLASPTQF---KEWITF 98 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~--~~~k~~IiVlNK~DL~~~~~~---~~~~~~ 98 (298)
-|.+.........+...+..+|++++|+|+..+.+... ..+...+. ..+.|+++|.||+|+.+.... +.....
T Consensus 51 i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~ 130 (166)
T cd01893 51 IVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLP 130 (166)
T ss_pred EEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHH
Confidence 45544334555556677899999999999987644332 11221111 247899999999999764321 221111
Q ss_pred H-Hcc-C-CCEEEEecCCCcCHHHHHHHHHHH
Q 022351 99 F-DQQ-N-CPSFGVNSHNKDNVKEFLKFLQAH 127 (298)
Q Consensus 99 ~-~~~-~-~~vi~iSa~~~~gi~~L~~~l~~~ 127 (298)
+ ... . .+++.+||+++.|++++.+.+...
T Consensus 131 ~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~ 162 (166)
T cd01893 131 IMNEFREIETCVECSAKTLINVSEVFYYAQKA 162 (166)
T ss_pred HHHHHhcccEEEEeccccccCHHHHHHHHHHH
Confidence 1 111 2 368899999999999999988754
No 230
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.35 E-value=1.2e-06 Score=76.59 Aligned_cols=103 Identities=12% Similarity=0.105 Sum_probs=70.1
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD 100 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~ 100 (298)
-|..+++.+.......++..+|.+|+|+|...+.+..+ ..+... ..+.|+++|.||+|+.......+...+.+
T Consensus 66 i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~~~~~ 143 (219)
T PLN03071 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR 143 (219)
T ss_pred EEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHHHHHH
Confidence 57666656665555567899999999999987533221 112222 24689999999999964321111223333
Q ss_pred ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 101 QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
..+.+++.+||+++.|+++++.+|.+.+.+
T Consensus 144 ~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 144 KKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred hcCCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 456678999999999999999998876643
No 231
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.35 E-value=1.4e-06 Score=72.60 Aligned_cols=99 Identities=14% Similarity=0.060 Sum_probs=64.8
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH-
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD- 100 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~- 100 (298)
|..+...+.......++..+|.+++|+|+..+....+ ..+..++. ..++|+++|+||+|+.......+..+.+.
T Consensus 48 ~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l 127 (167)
T cd04161 48 FDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSL 127 (167)
T ss_pred EECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCc
Confidence 5444445566667788999999999999987532211 11222222 14789999999999965443333333321
Q ss_pred -----ccC--CCEEEEecCCC------cCHHHHHHHHH
Q 022351 101 -----QQN--CPSFGVNSHNK------DNVKEFLKFLQ 125 (298)
Q Consensus 101 -----~~~--~~vi~iSa~~~------~gi~~L~~~l~ 125 (298)
+.+ +.++.+||++| .|+++-++||.
T Consensus 128 ~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 128 EKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred ccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 112 35677999998 78999999885
No 232
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.35 E-value=1.5e-06 Score=73.39 Aligned_cols=105 Identities=16% Similarity=0.092 Sum_probs=68.3
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChh------hHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPT------QFKEW 95 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~------~~~~~ 95 (298)
-|..+.+.+........+..+|++++|+|..++.+..+. .+...+. ..+.|+++|.||+|+.+.. .....
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~ 132 (187)
T cd04132 53 LWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQA 132 (187)
T ss_pred EEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHH
Confidence 455444455555555678999999999999865432221 1111111 2468999999999996532 11222
Q ss_pred HHHHHccCC-CEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 96 ITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 96 ~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+.....+. +++.+||+++.|+++++..+...+..
T Consensus 133 ~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 133 ESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred HHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 222233455 78999999999999999988876654
No 233
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.35 E-value=2.8e-06 Score=70.25 Aligned_cols=98 Identities=15% Similarity=0.089 Sum_probs=64.4
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhc-c--CCCCCCcEEEEEecCCCCChhh--HHHHHHHHHc
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRN-H--HPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQ 101 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~-~--l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~ 101 (298)
.||+ .+........+..+|++++|+|+..+.+... ..+.. + ....+.|+++|.||+|+..... .+...+..+.
T Consensus 59 ~~G~-~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 137 (165)
T cd01864 59 TAGQ-ERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEK 137 (165)
T ss_pred CCCh-HHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence 3454 5666666778899999999999987633211 11211 1 1124689999999999974421 1222222223
Q ss_pred cCC-CEEEEecCCCcCHHHHHHHHHH
Q 022351 102 QNC-PSFGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 102 ~~~-~vi~iSa~~~~gi~~L~~~l~~ 126 (298)
.+. .++.+||+++.|++++++.+.+
T Consensus 138 ~~~~~~~e~Sa~~~~~v~~~~~~l~~ 163 (165)
T cd01864 138 NGMLAVLETSAKESQNVEEAFLLMAT 163 (165)
T ss_pred cCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 333 5799999999999999988764
No 234
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.35 E-value=2.5e-06 Score=68.85 Aligned_cols=105 Identities=18% Similarity=0.158 Sum_probs=77.5
Q ss_pred CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC--cccHHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHH
Q 022351 25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFS--SEFDQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFF 99 (298)
Q Consensus 25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~--~~~~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~ 99 (298)
..|..|+..++.-.+..+...+++|+|++||.+|.. ..-.++..++. ..+.|.+++-||.|+...-.....++.+
T Consensus 68 klwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rm 147 (186)
T KOG0075|consen 68 KLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERM 147 (186)
T ss_pred EEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHh
Confidence 368888888888888889999999999999998632 12233444332 2579999999999997654444555544
Q ss_pred H-----ccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 100 D-----QQNCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 100 ~-----~~~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
. ....-++.+||+...+++.++++|.++-+
T Consensus 148 gL~sitdREvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 148 GLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred CccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 2 12235789999999999999999987654
No 235
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.34 E-value=1.6e-06 Score=76.00 Aligned_cols=105 Identities=16% Similarity=0.085 Sum_probs=67.9
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccC--CCCCCcEEEEEecCCCCCh------------
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHH--PFSSSRRILVLNKMDLASP------------ 89 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l--~~~~k~~IiVlNK~DL~~~------------ 89 (298)
-|..++..+.......++..+|++|+|+|+..+.+..+. .+..+. ...+.|+|+|.||+||...
T Consensus 48 iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~ 127 (220)
T cd04126 48 IWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGD 127 (220)
T ss_pred EEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccc
Confidence 466555455555556679999999999999875432221 122121 1246899999999999651
Q ss_pred -------h--hHHHHHHHHHccC--------------CCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 90 -------T--QFKEWITFFDQQN--------------CPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 90 -------~--~~~~~~~~~~~~~--------------~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
. ..++...+.++.+ .+++.+||+++.|+++++..+.+.+.+
T Consensus 128 ~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 128 RVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 0 1122222222222 468999999999999999988776543
No 236
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.34 E-value=1.1e-06 Score=72.20 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
++|+++|.||+|||||+|++.+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~ 22 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTD 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999999983
No 237
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.32 E-value=8.2e-07 Score=88.57 Aligned_cols=53 Identities=40% Similarity=0.528 Sum_probs=41.6
Q ss_pred cCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCC
Q 022351 149 GIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPP 213 (298)
Q Consensus 149 G~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~ 213 (298)
|.||||||||+|+|.+ ....+++.||+|.+.....+. ++.++.++||||....
T Consensus 1 G~pNvGKSSL~N~Ltg------------~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~ 54 (591)
T TIGR00437 1 GNPNVGKSTLFNALTG------------ANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSL 54 (591)
T ss_pred CCCCCCHHHHHHHHhC------------CCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCcccc
Confidence 8999999999999982 235788999999987643332 3346899999998764
No 238
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.32 E-value=1.2e-06 Score=72.07 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGIL 211 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~ 211 (298)
++++++|.+|||||||+|+|++. .......+..|.......+.+... -.+.++||||..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 60 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVEN----------KFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC----------CCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchH
Confidence 37899999999999999999831 111222222222222222333221 247899999963
No 239
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.32 E-value=9.5e-07 Score=78.47 Aligned_cols=65 Identities=26% Similarity=0.376 Sum_probs=50.1
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEI 215 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~ 215 (298)
.....+++.|.+|||||||||.+++.. ...-+.++.||-|+.++.+.+.. ..+++|.||+...+.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k---------~~~~t~k~K~g~Tq~in~f~v~~--~~~~vDlPG~~~a~y 198 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVK---------NIADTSKSKNGKTQAINHFHVGK--SWYEVDLPGYGRAGY 198 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhh---------hhhhhcCCCCccceeeeeeeccc--eEEEEecCCcccccC
Confidence 456799999999999999999998532 22233445899999999888754 499999999665443
No 240
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.32 E-value=2.6e-06 Score=86.93 Aligned_cols=91 Identities=13% Similarity=0.123 Sum_probs=66.6
Q ss_pred HHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH----cc-CCCEEEEecCCC
Q 022351 40 ADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD----QQ-NCPSFGVNSHNK 114 (298)
Q Consensus 40 ~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~----~~-~~~vi~iSa~~~ 114 (298)
...+..+|++++|+|+..+.+..+..+...+...++|+++|+||+||.+....+...+.+. .. ..+++++||+++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg 606 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTG 606 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCC
Confidence 3458999999999999988766655544433346899999999999986543322222221 11 237799999999
Q ss_pred cCHHHHHHHHHHHHHh
Q 022351 115 DNVKEFLKFLQAHVRN 130 (298)
Q Consensus 115 ~gi~~L~~~l~~~i~~ 130 (298)
.|+++|++.+.+.+..
T Consensus 607 ~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 607 WHTNRLAPAMQEALES 622 (712)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999887765
No 241
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=2.4e-06 Score=82.10 Aligned_cols=99 Identities=15% Similarity=0.122 Sum_probs=70.4
Q ss_pred chhhHHHHHHHHHH-hcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccC---
Q 022351 28 YGPHMAAATRAIAD-RMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQN--- 103 (298)
Q Consensus 28 fpghm~~~~~~i~~-~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~--- 103 (298)
-|||. ++-.|+. -.+-+|++++|+|+.+....+..+-.+.++..+.|+++++||+|..+.. .......+.+.|
T Consensus 62 TPGHe--AFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~n-p~~v~~el~~~gl~~ 138 (509)
T COG0532 62 TPGHE--AFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEAN-PDKVKQELQEYGLVP 138 (509)
T ss_pred CCcHH--HHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCC-HHHHHHHHHHcCCCH
Confidence 38994 3444444 3688999999999999887776655555556899999999999997432 122222222222
Q ss_pred ------CCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 104 ------CPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 104 ------~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
..++++||++|+|+++|+..+.-...
T Consensus 139 E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 139 EEWGGDVIFVPVSAKTGEGIDELLELILLLAE 170 (509)
T ss_pred hhcCCceEEEEeeccCCCCHHHHHHHHHHHHH
Confidence 25789999999999999998765443
No 242
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.32 E-value=9.9e-07 Score=82.92 Aligned_cols=76 Identities=13% Similarity=0.180 Sum_probs=51.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhh----hhcCCccceeecCCCC---eeeeeEE-----EEEccC----CCEE
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITA----AEKGKLRHATVSPQPG---ETKDIYS-----LKIASH----PNIY 203 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~----~~~~~~~~~~~~~~pg---~T~~~~~-----~~~~~~----~~~~ 203 (298)
...+.|+++|..|+|||||||++.+.-.++. ..+.+.+.-.+++.+| ||.++.. +.+... .++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 4568999999999999999999986422111 1111122335788899 7877653 223222 3699
Q ss_pred EEeCCCCCCCCC
Q 022351 204 VLDTPGILPPEI 215 (298)
Q Consensus 204 liDTPGi~~~~~ 215 (298)
+|||+|+...+.
T Consensus 95 lIDcvG~~v~Ga 106 (492)
T TIGR02836 95 LVDCVGYTVKGA 106 (492)
T ss_pred EEECCCcccCCC
Confidence 999999987543
No 243
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.31 E-value=6.3e-07 Score=76.46 Aligned_cols=64 Identities=28% Similarity=0.392 Sum_probs=39.6
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEc-------------cCCCEEEEeC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIA-------------SHPNIYVLDT 207 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~-------------~~~~~~liDT 207 (298)
++|+++|.+|+|||||+|+|++..... .-........+|+|.+... +.+. ....+.++||
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~-----~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt 75 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTA-----AFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDC 75 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchh-----hhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEEC
Confidence 379999999999999999998521000 0011122334566666542 2222 1336899999
Q ss_pred CCCC
Q 022351 208 PGIL 211 (298)
Q Consensus 208 PGi~ 211 (298)
||..
T Consensus 76 pG~~ 79 (192)
T cd01889 76 PGHA 79 (192)
T ss_pred CCcH
Confidence 9973
No 244
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.31 E-value=7e-06 Score=69.97 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=73.3
Q ss_pred HHHHHHHHHhcC---CCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH---c--cCC
Q 022351 33 AAATRAIADRMP---LVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD---Q--QNC 104 (298)
Q Consensus 33 ~~~~~~i~~~l~---~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~---~--~~~ 104 (298)
++..+.+.+++. +...++.|+|+|.++...+.++.+++...+.|+++|+||+|.++..+....+.... . ...
T Consensus 91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~ 170 (200)
T COG0218 91 EKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPD 170 (200)
T ss_pred HHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCc
Confidence 444455666654 35688999999999998888888887778999999999999998655443333222 1 122
Q ss_pred C--EEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 105 P--SFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 105 ~--vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
. ++.+|+.++.|++++...|.+.+.+
T Consensus 171 ~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 171 DQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred cceEEEEecccccCHHHHHHHHHHHhhc
Confidence 2 7889999999999999999877653
No 245
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.31 E-value=1.8e-06 Score=74.88 Aligned_cols=91 Identities=19% Similarity=0.246 Sum_probs=58.8
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCC-CcEEEEEecCCCCCh--hhHH----HHHHHHH
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSS-SRRILVLNKMDLASP--TQFK----EWITFFD 100 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~-k~~IiVlNK~DL~~~--~~~~----~~~~~~~ 100 (298)
-||| .++...+...+..+|++++|+|+..+..........++...+ +++|+|+||+|+... +... +..+.+.
T Consensus 84 TpG~-~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~ 162 (208)
T cd04166 84 TPGH-EQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAA 162 (208)
T ss_pred CCcH-HHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHH
Confidence 4676 556666777899999999999998876544433322222234 456778999999742 2111 2222223
Q ss_pred ccC---CCEEEEecCCCcCHHH
Q 022351 101 QQN---CPSFGVNSHNKDNVKE 119 (298)
Q Consensus 101 ~~~---~~vi~iSa~~~~gi~~ 119 (298)
..+ .+++++||+++.|+.+
T Consensus 163 ~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 163 KLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HcCCCCceEEEEeCCCCCCCcc
Confidence 334 3589999999999874
No 246
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.31 E-value=3.2e-06 Score=80.52 Aligned_cols=88 Identities=14% Similarity=0.020 Sum_probs=60.0
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEE-EEEecCCCCChhhHH-----HHHHHHH
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRI-LVLNKMDLASPTQFK-----EWITFFD 100 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~I-iVlNK~DL~~~~~~~-----~~~~~~~ 100 (298)
.-||| .++...+...+..+|.+++|+|++.+......+...++...+.|.+ +++||+|+.+.+... +..+.++
T Consensus 81 DtpGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~ 159 (394)
T TIGR00485 81 DCPGH-ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred ECCch-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 44888 5677888888899999999999998655554444443333567765 689999998643221 2223333
Q ss_pred ccC-----CCEEEEecCCCc
Q 022351 101 QQN-----CPSFGVNSHNKD 115 (298)
Q Consensus 101 ~~~-----~~vi~iSa~~~~ 115 (298)
..+ ++++++||.++.
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 160 EYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred hcCCCccCccEEECcccccc
Confidence 222 578999998764
No 247
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.30 E-value=1.4e-06 Score=72.26 Aligned_cols=100 Identities=15% Similarity=0.048 Sum_probs=63.0
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HH----HhccCC--CCCCcEEEEEecCCCCChhhH--HHHHH
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQ----LRNHHP--FSSSRRILVLNKMDLASPTQF--KEWIT 97 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~----l~~~l~--~~~k~~IiVlNK~DL~~~~~~--~~~~~ 97 (298)
|..+...+........+..+|.+++|+|...+.+..+ .. +..... ..+.|+++|.||+|+.+...+ +....
T Consensus 54 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~ 133 (165)
T cd04140 54 TDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAA 133 (165)
T ss_pred EECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHH
Confidence 4433334444444466789999999999986543221 11 211111 146899999999999652221 12122
Q ss_pred HHHccCCCEEEEecCCCcCHHHHHHHHHH
Q 022351 98 FFDQQNCPSFGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 98 ~~~~~~~~vi~iSa~~~~gi~~L~~~l~~ 126 (298)
+....+.+++.+||+++.|+++++++|.+
T Consensus 134 ~~~~~~~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 134 CATEWNCAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred HHHHhCCcEEEeecCCCCCHHHHHHHHHh
Confidence 22234567899999999999999998864
No 248
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.30 E-value=5.6e-06 Score=69.29 Aligned_cols=98 Identities=9% Similarity=0.038 Sum_probs=75.8
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCC-CcEEEEEecCCCCChhhHHHHHHHHHc--cCC
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSS-SRRILVLNKMDLASPTQFKEWITFFDQ--QNC 104 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~-k~~IiVlNK~DL~~~~~~~~~~~~~~~--~~~ 104 (298)
+||| .++.-.+.-..+.++-.++++|++.|.......+.+++.... .|++|..||.||.+..-.++..+++.. ...
T Consensus 75 tPGq-~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~ 153 (187)
T COG2229 75 TPGQ-ERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELLSV 153 (187)
T ss_pred CCCc-HHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhccCCC
Confidence 4899 778888888899999999999999988765555655544444 899999999999765545555566643 367
Q ss_pred CEEEEecCCCcCHHHHHHHHHH
Q 022351 105 PSFGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 105 ~vi~iSa~~~~gi~~L~~~l~~ 126 (298)
+++.+++..+++..+.+..+..
T Consensus 154 ~vi~~~a~e~~~~~~~L~~ll~ 175 (187)
T COG2229 154 PVIEIDATEGEGARDQLDVLLL 175 (187)
T ss_pred ceeeeecccchhHHHHHHHHHh
Confidence 8999999999998887776653
No 249
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.30 E-value=2.9e-06 Score=70.61 Aligned_cols=100 Identities=14% Similarity=0.089 Sum_probs=64.9
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--cHHHhccC---CCCCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE--FDQLRNHH---PFSSSRRILVLNKMDLASPTQFKEWITFFD 100 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~--~~~l~~~l---~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~ 100 (298)
-|..++..+....+...+..+|.+++|+|+..+.... ...+...+ ...+.|+++++||+|+......+...+.+.
T Consensus 62 ~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~ 141 (173)
T cd04155 62 VWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALN 141 (173)
T ss_pred EEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcC
Confidence 3444444455555667789999999999997642111 11222221 124689999999999976544444444432
Q ss_pred cc-----CCCEEEEecCCCcCHHHHHHHHH
Q 022351 101 QQ-----NCPSFGVNSHNKDNVKEFLKFLQ 125 (298)
Q Consensus 101 ~~-----~~~vi~iSa~~~~gi~~L~~~l~ 125 (298)
-. .++++.+||++++|+++++++|.
T Consensus 142 ~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 171 (173)
T cd04155 142 LHDLRDRTWHIQACSAKTGEGLQEGMNWVC 171 (173)
T ss_pred CcccCCCeEEEEEeECCCCCCHHHHHHHHh
Confidence 11 12467899999999999999885
No 250
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.30 E-value=1.7e-06 Score=71.77 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=36.6
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCC
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGIL 211 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~ 211 (298)
.++|+++|.+|||||||+|++... .-.....+..|++.....+.+.+. -.+.++||||..
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~----------~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 63 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSED----------SFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC----------cCCcccccCccceEEEEEEEECCEEEEEEEEeCCchH
Confidence 368999999999999999999831 111111222233333333333321 147899999953
No 251
>PLN03110 Rab GTPase; Provisional
Probab=98.30 E-value=5.8e-06 Score=72.10 Aligned_cols=106 Identities=11% Similarity=0.003 Sum_probs=70.2
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhccC---CCCCCcEEEEEecCCCCChhhH-HHHHHHH-
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRNHH---PFSSSRRILVLNKMDLASPTQF-KEWITFF- 99 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~~l---~~~~k~~IiVlNK~DL~~~~~~-~~~~~~~- 99 (298)
-|...+..+........+..+|.+++|+|...+.+..+ ..+...+ ...+.|+++|.||+|+.....+ .+....+
T Consensus 65 l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~ 144 (216)
T PLN03110 65 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALA 144 (216)
T ss_pred EEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHH
Confidence 45544446666666778999999999999986533221 1111111 1246899999999998643211 1112222
Q ss_pred HccCCCEEEEecCCCcCHHHHHHHHHHHHHhh
Q 022351 100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL 131 (298)
Q Consensus 100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~~ 131 (298)
...+++++.+||+++.|++++++.+...+.+.
T Consensus 145 ~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 145 EKEGLSFLETSALEATNVEKAFQTILLEIYHI 176 (216)
T ss_pred HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 23467899999999999999999998777653
No 252
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.30 E-value=2e-06 Score=85.80 Aligned_cols=102 Identities=20% Similarity=0.163 Sum_probs=74.4
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh---hhHHHHHHHHH----
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP---TQFKEWITFFD---- 100 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~---~~~~~~~~~~~---- 100 (298)
-||| ..+...+...+..+|.+++|+|+..+.......+...+...+.|+++++||+|+... +...+..+.+.
T Consensus 71 TPGh-~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~ 149 (594)
T TIGR01394 71 TPGH-ADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGA 149 (594)
T ss_pred CCCH-HHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcc
Confidence 4788 667788889999999999999998765554444444433467899999999998642 22334444442
Q ss_pred ---ccCCCEEEEecCCCc----------CHHHHHHHHHHHHHh
Q 022351 101 ---QQNCPSFGVNSHNKD----------NVKEFLKFLQAHVRN 130 (298)
Q Consensus 101 ---~~~~~vi~iSa~~~~----------gi~~L~~~l~~~i~~ 130 (298)
+..++++++||+++. |+..|++.+.+.++.
T Consensus 150 ~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 150 DDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred ccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 224578999999985 799999988887764
No 253
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.29 E-value=1.7e-06 Score=71.68 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
++|+++|.+|||||||+|+|..
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~ 22 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVN 22 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999999983
No 254
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.29 E-value=3.2e-06 Score=80.80 Aligned_cols=91 Identities=22% Similarity=0.225 Sum_probs=61.8
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCC-CCCcEEEEEecCCCCCh--hhHHHHHH----HHH
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPF-SSSRRILVLNKMDLASP--TQFKEWIT----FFD 100 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~-~~k~~IiVlNK~DL~~~--~~~~~~~~----~~~ 100 (298)
-||| .++.+.+...+..+|++++|+|+..+......+...++.. ..+++++++||+|+.+. +.++...+ +++
T Consensus 87 tPGh-~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~ 165 (406)
T TIGR02034 87 TPGH-EQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAE 165 (406)
T ss_pred CCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHHHHHHH
Confidence 3888 5677788888999999999999998776655433222212 23467889999999752 22222222 222
Q ss_pred ccC---CCEEEEecCCCcCHHH
Q 022351 101 QQN---CPSFGVNSHNKDNVKE 119 (298)
Q Consensus 101 ~~~---~~vi~iSa~~~~gi~~ 119 (298)
..+ .+++++||.++.|+++
T Consensus 166 ~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 166 QLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HcCCCCccEEEeecccCCCCcc
Confidence 223 3689999999998875
No 255
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.29 E-value=2.3e-06 Score=85.16 Aligned_cols=98 Identities=19% Similarity=0.196 Sum_probs=67.2
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCC--hhhHHHHHHHHH----c
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLAS--PTQFKEWITFFD----Q 101 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~--~~~~~~~~~~~~----~ 101 (298)
.||| ..+.......+..+|++++|+|+.++......+....+...+.|+++++||+|+.. .+.+...+..+. .
T Consensus 142 TPGh-e~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~ 220 (587)
T TIGR00487 142 TPGH-EAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPED 220 (587)
T ss_pred CCCC-cchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHh
Confidence 3787 45555556678999999999999876554443333333346799999999999954 223333222211 1
Q ss_pred c--CCCEEEEecCCCcCHHHHHHHHHH
Q 022351 102 Q--NCPSFGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 102 ~--~~~vi~iSa~~~~gi~~L~~~l~~ 126 (298)
. ..+++++||+++.|+++|++.+..
T Consensus 221 ~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 221 WGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred cCCCceEEEEECCCCCChHHHHHhhhh
Confidence 1 136899999999999999998864
No 256
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.29 E-value=4.1e-06 Score=68.24 Aligned_cols=98 Identities=18% Similarity=0.097 Sum_probs=65.4
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHH
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFD 100 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~ 100 (298)
+||+ ..........+..+|++++|+|...+.+..+ ..+.........|+++|+||+|+.... ..+.......
T Consensus 54 ~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 132 (160)
T cd00876 54 TAGQ-EEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK 132 (160)
T ss_pred CCCh-HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH
Confidence 4555 4444555677889999999999876532111 112222112479999999999997632 1223333333
Q ss_pred ccCCCEEEEecCCCcCHHHHHHHHHH
Q 022351 101 QQNCPSFGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 101 ~~~~~vi~iSa~~~~gi~~L~~~l~~ 126 (298)
..+.+++.+|++++.|++++++.|.+
T Consensus 133 ~~~~~~~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 133 EWGCPFIETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred HcCCcEEEeccCCCCCHHHHHHHHHh
Confidence 44578999999999999999998864
No 257
>PRK12735 elongation factor Tu; Reviewed
Probab=98.29 E-value=4.2e-06 Score=79.73 Aligned_cols=103 Identities=13% Similarity=0.045 Sum_probs=70.6
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEE-EEEecCCCCChhhHH-----HHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRI-LVLNKMDLASPTQFK-----EWITFF 99 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~I-iVlNK~DL~~~~~~~-----~~~~~~ 99 (298)
-.-||| .++...+...+..+|++++|+|+..+......++..++...+.|.+ +++||+|+.+.+... +...++
T Consensus 80 iDtPGh-~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l 158 (396)
T PRK12735 80 VDCPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELL 158 (396)
T ss_pred EECCCH-HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHH
Confidence 355888 5788888899999999999999987655544444333334577866 579999998543221 222233
Q ss_pred Hcc-----CCCEEEEecCCCc----------CHHHHHHHHHHHHH
Q 022351 100 DQQ-----NCPSFGVNSHNKD----------NVKEFLKFLQAHVR 129 (298)
Q Consensus 100 ~~~-----~~~vi~iSa~~~~----------gi~~L~~~l~~~i~ 129 (298)
... .++++++||.++. ++..|++.|.+.++
T Consensus 159 ~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 222 2578999999873 67888888877654
No 258
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.29 E-value=2.4e-07 Score=81.43 Aligned_cols=114 Identities=17% Similarity=0.159 Sum_probs=82.1
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE-EEEEccCCCEEEEeCCCCCCCCCCChhhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY-SLKIASHPNIYVLDTPGILPPEIHDVEVC 221 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~-~~~~~~~~~~~liDTPGi~~~~~~~~~~~ 221 (298)
.++.++|+|.|||||+++-|. +..+.+..+-|+|.... .+.-..+.++.|.|.|||.+.......++
T Consensus 60 a~vg~vgFPSvGksTl~~~l~------------g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg 127 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLT------------GTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRG 127 (358)
T ss_pred eeeeEEecCccchhhhhhhhc------------CCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCc
Confidence 389999999999999999998 34556677777774433 44335677899999999998655443333
Q ss_pred hhhhhhcccccCCCChHHHHHHHHHHHccCCchhHHHhhcccCCCcccccccccCCC
Q 022351 222 SKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQINKPLTLHHKADQS 278 (298)
Q Consensus 222 ~~la~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (298)
. .++...+-+.+++.+|+...+..+-..+..+-.++.-.|.+.+++.
T Consensus 128 ~----------qviavartcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i 174 (358)
T KOG1487|consen 128 K----------QVIAVARTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNI 174 (358)
T ss_pred c----------EEEEEeecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCc
Confidence 2 1334455566666777777777777777777778888888877775
No 259
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.28 E-value=6.6e-06 Score=69.76 Aligned_cols=103 Identities=19% Similarity=0.113 Sum_probs=67.9
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--H---HHhccCCCCCCcEEEEEecCCCCChhhH--HHHHHHH
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--D---QLRNHHPFSSSRRILVLNKMDLASPTQF--KEWITFF 99 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~---~l~~~l~~~~k~~IiVlNK~DL~~~~~~--~~~~~~~ 99 (298)
|..+...+........+..+|.+++|+|+..+.+..+ . .+..+ .....|+++|.||+|+.+...+ .....+.
T Consensus 54 ~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~-~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~ 132 (188)
T cd04125 54 WDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRY-ARENVIKVIVANKSDLVNNKVVDSNIAKSFC 132 (188)
T ss_pred EECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECCCCcccccCCHHHHHHHH
Confidence 5544445555566778999999999999986532111 1 11111 1235789999999999743211 1112222
Q ss_pred HccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
...+.+++.+||+++.|+++++..+...+..
T Consensus 133 ~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 133 DSLNIPFFETSAKQSINVEEAFILLVKLIIK 163 (188)
T ss_pred HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2346689999999999999999988776644
No 260
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.28 E-value=1.8e-06 Score=70.88 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHHhh
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.++++++|.+|||||||+|++++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~ 24 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQ 24 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHh
Confidence 36899999999999999999983
No 261
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.28 E-value=7e-06 Score=68.38 Aligned_cols=102 Identities=22% Similarity=0.184 Sum_probs=63.8
Q ss_pred ccchhhHHHHHH-HHHHhcCCCCeEEEEEeCCCCCCcccH-H----HhccCCCCCCcEEEEEecCCCCChhhH--HHHHH
Q 022351 26 GWYGPHMAAATR-AIADRMPLVDIILEVRDARIPFSSEFD-Q----LRNHHPFSSSRRILVLNKMDLASPTQF--KEWIT 97 (298)
Q Consensus 26 ~wfpghm~~~~~-~i~~~l~~aDlVl~VvDa~~p~~~~~~-~----l~~~l~~~~k~~IiVlNK~DL~~~~~~--~~~~~ 97 (298)
-|..+++.+... .+...+.++|.+++|+|+..+.+..+. . +.......+.|+++|.||+|+.....+ +...+
T Consensus 55 i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~ 134 (170)
T cd04115 55 LWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQR 134 (170)
T ss_pred EEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHH
Confidence 455444454443 455678999999999999865432221 1 122222246899999999998643221 12222
Q ss_pred HHHccCCCEEEEecCC---CcCHHHHHHHHHHH
Q 022351 98 FFDQQNCPSFGVNSHN---KDNVKEFLKFLQAH 127 (298)
Q Consensus 98 ~~~~~~~~vi~iSa~~---~~gi~~L~~~l~~~ 127 (298)
+.+....+++.+||++ +.++++++..+.+.
T Consensus 135 ~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~ 167 (170)
T cd04115 135 FADAHSMPLFETSAKDPSENDHVEAIFMTLAHK 167 (170)
T ss_pred HHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHH
Confidence 2233456889999998 77788877776544
No 262
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.28 E-value=2.1e-06 Score=71.00 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHHh
Q 022351 143 VTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~ 163 (298)
++++++|.+|||||||+|++.
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~ 23 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFA 23 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 589999999999999999998
No 263
>PRK00049 elongation factor Tu; Reviewed
Probab=98.27 E-value=5.1e-06 Score=79.14 Aligned_cols=103 Identities=13% Similarity=0.055 Sum_probs=71.9
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEE-EEEecCCCCChhh-HH----HHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRI-LVLNKMDLASPTQ-FK----EWITFF 99 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~I-iVlNK~DL~~~~~-~~----~~~~~~ 99 (298)
..-||| .++...+...+..+|++++|+|+..+.......+..++...+.|.+ +++||+|+.+.+. .+ +..+.+
T Consensus 80 iDtPG~-~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l 158 (396)
T PRK00049 80 VDCPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELL 158 (396)
T ss_pred EECCCH-HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHH
Confidence 345898 5788888888999999999999998766665555555444678876 5899999985432 21 222333
Q ss_pred Hcc-----CCCEEEEecCCCc----------CHHHHHHHHHHHHH
Q 022351 100 DQQ-----NCPSFGVNSHNKD----------NVKEFLKFLQAHVR 129 (298)
Q Consensus 100 ~~~-----~~~vi~iSa~~~~----------gi~~L~~~l~~~i~ 129 (298)
... ..+++++||.++. ++..|++.|.+.++
T Consensus 159 ~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 332 2478999998764 56778887776543
No 264
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=1.6e-06 Score=80.29 Aligned_cols=69 Identities=30% Similarity=0.332 Sum_probs=41.0
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEE--EEccC-C--CEEEEeCCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL--KIASH-P--NIYVLDTPGILPP 213 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~--~~~~~-~--~~~liDTPGi~~~ 213 (298)
+-.+++|++|.+|.|||||||+|+.+..... ......+..|-.|..+... .+..+ - ++.|+||||+.+.
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~-----~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~ 92 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGN-----REVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDA 92 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCC-----cccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccc
Confidence 4568999999999999999999996422211 1111122222223333322 12211 1 4889999999873
No 265
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.27 E-value=2.2e-06 Score=71.01 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHHh
Q 022351 143 VTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~ 163 (298)
++++++|.+|||||||+|++.
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~ 22 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYA 22 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 589999999999999999998
No 266
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.26 E-value=3.8e-06 Score=85.21 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=69.8
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHH----Hc
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFF----DQ 101 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~----~~ 101 (298)
.||| ..+...+...+..+|++|+|+|+.++......+....+...+.|+|+++||+|+.... .+...+..+ ..
T Consensus 302 TPGh-e~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~ 380 (742)
T CHL00189 302 TPGH-EAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEK 380 (742)
T ss_pred CCcH-HHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHh
Confidence 3677 5676767778999999999999987654443333333334679999999999996532 222222211 11
Q ss_pred cC--CCEEEEecCCCcCHHHHHHHHHHHH
Q 022351 102 QN--CPSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 102 ~~--~~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
.+ .+++++||+++.|+++|++.+..+.
T Consensus 381 ~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 381 WGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred hCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 22 4789999999999999999887654
No 267
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.26 E-value=2.6e-06 Score=74.51 Aligned_cols=91 Identities=18% Similarity=0.158 Sum_probs=57.7
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-------CcccHHHhccCCC-CCCcEEEEEecCCCCC----hhhHHH
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPF-------SSEFDQLRNHHPF-SSSRRILVLNKMDLAS----PTQFKE 94 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~-------~~~~~~l~~~l~~-~~k~~IiVlNK~DL~~----~~~~~~ 94 (298)
..||| ......+...+..+|++++|+|+..+. .........+... ..+|+++++||+|+.. ......
T Consensus 83 DtpG~-~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~ 161 (219)
T cd01883 83 DAPGH-RDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDE 161 (219)
T ss_pred ECCCh-HHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHHH
Confidence 34777 456777778889999999999998742 1111111111112 2368889999999973 222222
Q ss_pred HHH----HHHccC-----CCEEEEecCCCcCHH
Q 022351 95 WIT----FFDQQN-----CPSFGVNSHNKDNVK 118 (298)
Q Consensus 95 ~~~----~~~~~~-----~~vi~iSa~~~~gi~ 118 (298)
..+ .+...+ .+++++||++|.|++
T Consensus 162 i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 162 IKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 222 233332 469999999999976
No 268
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.26 E-value=1.2e-06 Score=84.16 Aligned_cols=72 Identities=29% Similarity=0.369 Sum_probs=46.7
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhh-cchhhh----------hcCCc--cceee------cCCCCeeeeeEEEEEc-cC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQI-GRITAA----------EKGKL--RHATV------SPQPGETKDIYSLKIA-SH 199 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~----------~~~~~--~~~~~------~~~pg~T~~~~~~~~~-~~ 199 (298)
.+.++++++|.+|+|||||+|+|+.. +.+... ..|+. +.+.+ -..+|+|+++....+. .+
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 46689999999999999999999842 222111 00110 00111 1268999998865543 34
Q ss_pred CCEEEEeCCCCC
Q 022351 200 PNIYVLDTPGIL 211 (298)
Q Consensus 200 ~~~~liDTPGi~ 211 (298)
..+.++||||..
T Consensus 84 ~~i~liDtpG~~ 95 (425)
T PRK12317 84 YYFTIVDCPGHR 95 (425)
T ss_pred eEEEEEECCCcc
Confidence 468999999964
No 269
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.25 E-value=2e-06 Score=71.93 Aligned_cols=58 Identities=22% Similarity=0.345 Sum_probs=37.6
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGIL 211 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~ 211 (298)
....+++++|.+|||||||+|+|.+ .......+..|... ..+.+. ...+.++||||..
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~-----------~~~~~~~~t~g~~~--~~~~~~-~~~l~l~D~~G~~ 69 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLG-----------EDIDTISPTLGFQI--KTLEYE-GYKLNIWDVGGQK 69 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHcc-----------CCCCCcCCccccce--EEEEEC-CEEEEEEECCCCH
Confidence 4557999999999999999999983 12222333333221 122222 3357899999964
No 270
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.25 E-value=3.9e-06 Score=70.75 Aligned_cols=75 Identities=13% Similarity=0.075 Sum_probs=54.0
Q ss_pred CCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhH----HHHHHHHHccC--CCEEEEecCCCcCH
Q 022351 44 PLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQF----KEWITFFDQQN--CPSFGVNSHNKDNV 117 (298)
Q Consensus 44 ~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~----~~~~~~~~~~~--~~vi~iSa~~~~gi 117 (298)
..+|.+++|+|++.++...+..+..++...++|+++|+||+|+.+.... +++.+.+...+ .+++++||++++|+
T Consensus 99 ~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 99 ENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGI 178 (179)
T ss_pred hhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCC
Confidence 4568999999999877766655544444467999999999999865432 33334443333 47999999999986
Q ss_pred H
Q 022351 118 K 118 (298)
Q Consensus 118 ~ 118 (298)
+
T Consensus 179 ~ 179 (179)
T TIGR03598 179 D 179 (179)
T ss_pred C
Confidence 3
No 271
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=9e-06 Score=76.53 Aligned_cols=114 Identities=14% Similarity=0.055 Sum_probs=84.4
Q ss_pred hcceecccCC----CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCC-CCCcEEEEEecCCCCCh
Q 022351 15 IGTAVSQKKG----GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPF-SSSRRILVLNKMDLASP 89 (298)
Q Consensus 15 ~g~~~~~~~~----~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~-~~k~~IiVlNK~DL~~~ 89 (298)
+|+..+.++. ...-||| .+.+..+...+.-.|..++|||+.+++..+.-+....+.. ..+..++|+||+|.+++
T Consensus 40 lg~~y~~~~d~~~~fIDvpgh-~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~ 118 (447)
T COG3276 40 LGFYYRKLEDGVMGFIDVPGH-PDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE 118 (447)
T ss_pred eeeEeccCCCCceEEeeCCCc-HHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH
Confidence 4677777664 3566899 7899999999999999999999987776655432222222 34555999999999987
Q ss_pred hhHHHHHHHHH----ccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 90 TQFKEWITFFD----QQNCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 90 ~~~~~~~~~~~----~~~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
+.++...+.+. -...+++.+|+.+++|+++|.+.|.+...
T Consensus 119 ~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 119 ARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred HHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 65554444332 12346799999999999999999998873
No 272
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.25 E-value=1.3e-06 Score=73.25 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~ 164 (298)
+|+++|.+|+|||||+|+|.+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~ 21 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLY 21 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHH
Confidence 479999999999999999985
No 273
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.24 E-value=6e-06 Score=82.15 Aligned_cols=102 Identities=14% Similarity=0.155 Sum_probs=68.0
Q ss_pred cc-hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhh--------------
Q 022351 27 WY-GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ-------------- 91 (298)
Q Consensus 27 wf-pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~-------------- 91 (298)
|. ||| ..+.......+..+|++++|+|++.+......+...++...+.|+++++||+|+.+...
T Consensus 74 iDTpG~-e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~ 152 (590)
T TIGR00491 74 IDTPGH-EAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQ 152 (590)
T ss_pred EECCCc-HhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhh
Confidence 54 555 56666666678999999999999876554444433333346889999999999974210
Q ss_pred ---H-HHH-------HHHHHcc---------------CCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 92 ---F-KEW-------ITFFDQQ---------------NCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 92 ---~-~~~-------~~~~~~~---------------~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
+ ..+ ...+.+. ..+++++||++|+|+++|+.++.....
T Consensus 153 ~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 153 EIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 0 000 0011111 247899999999999999998865443
No 274
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.24 E-value=6.3e-06 Score=65.23 Aligned_cols=96 Identities=21% Similarity=0.094 Sum_probs=65.3
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHH-----HhccCCCCCCcEEEEEecCCCCChhhHHHH---HHHHH
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQ-----LRNHHPFSSSRRILVLNKMDLASPTQFKEW---ITFFD 100 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~-----l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~---~~~~~ 100 (298)
||+ ..........+..+|.+++|+|+..+....... ........++|+++|+||+|+.+....... .....
T Consensus 53 ~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~ 131 (157)
T cd00882 53 AGQ-ERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAK 131 (157)
T ss_pred CCh-HHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHh
Confidence 443 444445567889999999999998764433221 111222468999999999999865543332 12222
Q ss_pred ccCCCEEEEecCCCcCHHHHHHHHH
Q 022351 101 QQNCPSFGVNSHNKDNVKEFLKFLQ 125 (298)
Q Consensus 101 ~~~~~vi~iSa~~~~gi~~L~~~l~ 125 (298)
....+++.+|+..+.|+++++++|.
T Consensus 132 ~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 132 ELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred hcCCcEEEEecCCCCChHHHHHHHh
Confidence 3456899999999999999998874
No 275
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.24 E-value=2.5e-06 Score=71.78 Aligned_cols=101 Identities=15% Similarity=0.097 Sum_probs=65.1
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccC--CCCCCcEEEEEecCCCCChhh-H--------
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHH--PFSSSRRILVLNKMDLASPTQ-F-------- 92 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l--~~~~k~~IiVlNK~DL~~~~~-~-------- 92 (298)
-|..++..+........+..+|++|+|+|..++.+..+. .+...+ ...+.|+++|.||+||.+... .
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~ 132 (174)
T cd01871 53 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 132 (174)
T ss_pred EEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccC
Confidence 477655555555555678999999999999876433221 121111 124689999999999954211 1
Q ss_pred -----HHHHHHHHccC-CCEEEEecCCCcCHHHHHHHHHH
Q 022351 93 -----KEWITFFDQQN-CPSFGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 93 -----~~~~~~~~~~~-~~vi~iSa~~~~gi~~L~~~l~~ 126 (298)
++..+..++.+ .+++.+||+++.|++++++.+.+
T Consensus 133 ~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 133 TPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred CCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHH
Confidence 11112222334 37899999999999999888753
No 276
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.24 E-value=6.5e-06 Score=72.75 Aligned_cols=105 Identities=11% Similarity=0.089 Sum_probs=70.0
Q ss_pred CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC--CCCCcEEEEEecCCCCCh-----------
Q 022351 25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP--FSSSRRILVLNKMDLASP----------- 89 (298)
Q Consensus 25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~--~~~k~~IiVlNK~DL~~~----------- 89 (298)
.-|..+...+.......++..+|++|+|+|...+.+..+ ..+...+. ..+.|+++|.||+||...
T Consensus 64 ~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~ 143 (232)
T cd04174 64 SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQK 143 (232)
T ss_pred EEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhcccc
Confidence 367776666665555668999999999999987644332 11211111 246899999999998531
Q ss_pred ---hhHHHHHHHHHccCC-CEEEEecCCCc-CHHHHHHHHHHHHH
Q 022351 90 ---TQFKEWITFFDQQNC-PSFGVNSHNKD-NVKEFLKFLQAHVR 129 (298)
Q Consensus 90 ---~~~~~~~~~~~~~~~-~vi~iSa~~~~-gi~~L~~~l~~~i~ 129 (298)
-..++..++.++.+. .++.+||+++. ++++++..+...+.
T Consensus 144 ~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 144 QAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred CCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHH
Confidence 112233334445566 58899999997 79999988776543
No 277
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.23 E-value=2.6e-06 Score=78.47 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
+-.++||++|.+|.||||+||+|++.
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~ 46 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGT 46 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHh
Confidence 56789999999999999999999965
No 278
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.23 E-value=3.6e-06 Score=71.87 Aligned_cols=104 Identities=17% Similarity=0.104 Sum_probs=68.3
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChhh-H--------
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPTQ-F-------- 92 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~~-~-------- 92 (298)
-|..+...+.......++..+|++|+|+|..++.+-.+. .+...+. ..+.|+++|.||+||.+... .
T Consensus 55 i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~ 134 (191)
T cd01875 55 LWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQ 134 (191)
T ss_pred EEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccC
Confidence 477666566665555678999999999999876432221 1211111 24789999999999964321 0
Q ss_pred -----HHHHHHHHccC-CCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 93 -----KEWITFFDQQN-CPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 93 -----~~~~~~~~~~~-~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
++..++.++.+ .+++.+||+++.|+++++..+.+.+.
T Consensus 135 ~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 135 APITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred CCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 11111222334 47899999999999999999886553
No 279
>COG2262 HflX GTPases [General function prediction only]
Probab=98.23 E-value=4.4e-06 Score=78.06 Aligned_cols=61 Identities=30% Similarity=0.345 Sum_probs=45.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~ 212 (298)
..-..|+++|++|+|||||+|+|.+ ...-+.+..+.|.+... +.+.++.++.+-||-||..
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~------------~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~ 252 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTG------------ADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIR 252 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhc------------cCeeccccccccccCceeEEEeCCCceEEEecCccCcc
Confidence 4457999999999999999999983 23344455556665553 4455566799999999986
No 280
>PLN03127 Elongation factor Tu; Provisional
Probab=98.23 E-value=5.3e-06 Score=80.16 Aligned_cols=103 Identities=12% Similarity=0.037 Sum_probs=69.0
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcE-EEEEecCCCCChhhHHH-----HHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRR-ILVLNKMDLASPTQFKE-----WITFF 99 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~-IiVlNK~DL~~~~~~~~-----~~~~~ 99 (298)
..-||| .+.+..+...+..+|++++|+|+..+......++..++...+.|. |+++||+|+.+.+...+ +.+.+
T Consensus 129 iDtPGh-~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l 207 (447)
T PLN03127 129 VDCPGH-ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELL 207 (447)
T ss_pred EECCCc-cchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence 345898 467777777888899999999999877666655555544567884 78899999986433222 11222
Q ss_pred Hcc-----CCCEEEEecC---CCcC-------HHHHHHHHHHHHH
Q 022351 100 DQQ-----NCPSFGVNSH---NKDN-------VKEFLKFLQAHVR 129 (298)
Q Consensus 100 ~~~-----~~~vi~iSa~---~~~g-------i~~L~~~l~~~i~ 129 (298)
... ..+++++|+. ++.+ +..|++.+.+.++
T Consensus 208 ~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 208 SFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 211 2467787775 3433 6778888877654
No 281
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.22 E-value=1.8e-06 Score=72.22 Aligned_cols=99 Identities=13% Similarity=0.032 Sum_probs=64.1
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC--CCCCcEEEEEecCCCCChhh-----------
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP--FSSSRRILVLNKMDLASPTQ----------- 91 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~--~~~k~~IiVlNK~DL~~~~~----------- 91 (298)
|..+.+.+........+..+|.+++|+|..++.+... ..+...+. ..+.|+++|.||+|+.+...
T Consensus 53 ~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 132 (173)
T cd04130 53 CDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEK 132 (173)
T ss_pred EECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCC
Confidence 6655545554444457899999999999987643322 11221111 24689999999999964321
Q ss_pred ---HHHHHHHHHccCC-CEEEEecCCCcCHHHHHHHHH
Q 022351 92 ---FKEWITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQ 125 (298)
Q Consensus 92 ---~~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~ 125 (298)
.++...+.+..+. +++.+||+++.|++++++.+.
T Consensus 133 ~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 133 PVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred CcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 1122222333455 789999999999999987763
No 282
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.22 E-value=2.5e-06 Score=69.91 Aligned_cols=55 Identities=31% Similarity=0.405 Sum_probs=35.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGIL 211 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~ 211 (298)
+|+++|.+|||||||+|++.. +......+..|.+. ..+.......+.++||||..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~-----------~~~~~~~~t~~~~~--~~~~~~~~~~l~i~D~~G~~ 55 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKH-----------AELVTTIPTVGFNV--EMLQLEKHLSLTVWDVGGQE 55 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhc-----------CCcccccCccCcce--EEEEeCCceEEEEEECCCCH
Confidence 478999999999999999983 22222333333332 22223233358899999964
No 283
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.22 E-value=9e-06 Score=72.52 Aligned_cols=103 Identities=17% Similarity=0.093 Sum_probs=64.7
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhcc--C------CCCCCcEEEEEecCCCCChh--
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNH--H------PFSSSRRILVLNKMDLASPT-- 90 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~--l------~~~~k~~IiVlNK~DL~~~~-- 90 (298)
-|..+............+..+|++|+|+|...+.+..+ ..+... . ...+.|+++|.||+|+....
T Consensus 52 I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v 131 (247)
T cd04143 52 ILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREV 131 (247)
T ss_pred EEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcccc
Confidence 35554434333322345789999999999986532111 112111 0 11468999999999996421
Q ss_pred hHHHHHHHHH-ccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351 91 QFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 91 ~~~~~~~~~~-~~~~~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
..++..+.+. ..+..++.+||+++.|++++++.|....
T Consensus 132 ~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 132 QRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred CHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 2233333332 2245789999999999999999998755
No 284
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.21 E-value=2.6e-06 Score=69.54 Aligned_cols=22 Identities=41% Similarity=0.529 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
++|+++|.+|||||||+|++..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~ 23 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQ 23 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999983
No 285
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.21 E-value=3e-06 Score=72.86 Aligned_cols=66 Identities=21% Similarity=0.294 Sum_probs=42.7
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccc--------eeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCC
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRH--------ATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGIL 211 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~--------~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~ 211 (298)
.++++++|.+|+|||||+++|+.... ..|+.+. ...-...|+|.+.....+. .+.++.++||||..
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~----~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 76 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLA----KKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 76 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH----hcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH
Confidence 36899999999999999999985311 0011110 0111256788777654442 34468999999974
No 286
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.21 E-value=3.1e-06 Score=70.00 Aligned_cols=102 Identities=22% Similarity=0.133 Sum_probs=63.8
Q ss_pred cc-hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCC-CCCCcEEEEEecCCCCChhh--HHHHHH
Q 022351 27 WY-GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHP-FSSSRRILVLNKMDLASPTQ--FKEWIT 97 (298)
Q Consensus 27 wf-pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~-~~~k~~IiVlNK~DL~~~~~--~~~~~~ 97 (298)
|. ||+...........+..+|++++|+|+..+.+... ..+..... ..+.|+++|.||+|+..... .+....
T Consensus 52 ~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~ 131 (165)
T cd04146 52 LDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEK 131 (165)
T ss_pred EECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHH
Confidence 44 55532223334567889999999999986533221 11222111 24789999999999854321 122222
Q ss_pred HHHccCCCEEEEecCCC-cCHHHHHHHHHHHH
Q 022351 98 FFDQQNCPSFGVNSHNK-DNVKEFLKFLQAHV 128 (298)
Q Consensus 98 ~~~~~~~~vi~iSa~~~-~gi~~L~~~l~~~i 128 (298)
..+..+.+++.+||+++ .|+++++..+.+.+
T Consensus 132 ~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 132 LASELGCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred HHHHcCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 23344568899999999 59999998887543
No 287
>CHL00071 tufA elongation factor Tu
Probab=98.21 E-value=3.2e-06 Score=80.90 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=45.8
Q ss_pred CCCceEEEEEcCCCCchHHHHHHHhhh-cchhhhhcCC----ccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCC
Q 022351 139 SSDTVTVMLLGIPNVGKSALANSLHQI-GRITAAEKGK----LRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGI 210 (298)
Q Consensus 139 ~~~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~~~~~----~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi 210 (298)
.++.++++++|.+|+|||||+|+|++. +..... ... .........+|+|.+.....+. .+.++.++||||.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~-~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh 85 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGA-KAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGH 85 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccc-cccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCCh
Confidence 466789999999999999999999853 111100 000 0111222347889887654443 3446889999995
No 288
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.20 E-value=2.9e-06 Score=72.17 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHHh
Q 022351 143 VTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~ 163 (298)
++|+++|.+|||||||+|+++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~ 21 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYV 21 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999998
No 289
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.20 E-value=3.6e-06 Score=69.84 Aligned_cols=23 Identities=43% Similarity=0.551 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~ 163 (298)
..++|+++|.+|||||||+|++.
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~ 26 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYV 26 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHH
Confidence 45799999999999999999998
No 290
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.20 E-value=2.4e-06 Score=70.04 Aligned_cols=57 Identities=19% Similarity=0.375 Sum_probs=36.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~ 212 (298)
+|+++|.+|||||||+|+|... ........+..|.+.. .+. .....+.++||||...
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~---------~~~~~~~~~t~g~~~~--~~~-~~~~~~~l~Dt~G~~~ 57 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPE---------NAQSQIIVPTVGFNVE--SFE-KGNLSFTAFDMSGQGK 57 (162)
T ss_pred CEEEECCCCCCHHHHHHHHccc---------CCCcceecCccccceE--EEE-ECCEEEEEEECCCCHh
Confidence 4789999999999999999831 1112234444554332 121 1223578999999643
No 291
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.20 E-value=2.5e-06 Score=69.03 Aligned_cols=54 Identities=20% Similarity=0.249 Sum_probs=32.9
Q ss_pred EEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCC
Q 022351 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGIL 211 (298)
Q Consensus 145 i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~ 211 (298)
|+++|.+|||||||+|+|.+. .. .....|.+..+...+.. ....+.++||||..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~----------~~--~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~ 55 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG----------QF--SEDTIPTVGFNMRKVTK-GNVTLKVWDLGGQP 55 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC----------CC--CcCccCCCCcceEEEEE-CCEEEEEEECCCCH
Confidence 789999999999999999831 11 11122322222222222 12347899999963
No 292
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.20 E-value=1.3e-05 Score=65.44 Aligned_cols=86 Identities=10% Similarity=0.052 Sum_probs=60.7
Q ss_pred hcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHH----HH--ccCCCEEEEecCCCc
Q 022351 42 RMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITF----FD--QQNCPSFGVNSHNKD 115 (298)
Q Consensus 42 ~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~----~~--~~~~~vi~iSa~~~~ 115 (298)
.-+.++.+++|+|...+.......+..++...+.|+++|+||+|+............ ++ ....+++++|++++.
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~ 157 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQ 157 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCC
Confidence 345678999999998765555444555544457899999999999765443322222 21 223478999999999
Q ss_pred CHHHHHHHHHHH
Q 022351 116 NVKEFLKFLQAH 127 (298)
Q Consensus 116 gi~~L~~~l~~~ 127 (298)
++.+++++|.++
T Consensus 158 ~~~~l~~~l~~~ 169 (170)
T cd01876 158 GIDELRALIEKW 169 (170)
T ss_pred CHHHHHHHHHHh
Confidence 999999988754
No 293
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.20 E-value=8.6e-06 Score=67.58 Aligned_cols=100 Identities=13% Similarity=0.021 Sum_probs=65.4
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCC---CCCCcEEEEEecCCCCChh-hHHHHHH
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHP---FSSSRRILVLNKMDLASPT-QFKEWIT 97 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~---~~~k~~IiVlNK~DL~~~~-~~~~~~~ 97 (298)
|..+++.+........+..+|.+++|+|...+.+... ..+..... ..+.|+++|.||+|+.... ..++..+
T Consensus 59 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 138 (170)
T cd04116 59 WDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQA 138 (170)
T ss_pred EeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHH
Confidence 5544446666666678999999999999876532211 11222211 1357999999999996432 1223333
Q ss_pred HHHccC-CCEEEEecCCCcCHHHHHHHHHH
Q 022351 98 FFDQQN-CPSFGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 98 ~~~~~~-~~vi~iSa~~~~gi~~L~~~l~~ 126 (298)
+.+..+ .+++.+||+++.|+.++++.+.+
T Consensus 139 ~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 139 WCRENGDYPYFETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred HHHHCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 333444 37899999999999999888754
No 294
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.19 E-value=2.8e-06 Score=70.76 Aligned_cols=103 Identities=16% Similarity=0.111 Sum_probs=64.6
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChhh-H--------
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPTQ-F-------- 92 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~~-~-------- 92 (298)
-|..+.+.+........+..+|++|+|+|...+.+..+. .+...+. ..+.|+++|.||+|+.+... .
T Consensus 50 i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 129 (174)
T smart00174 50 LWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQ 129 (174)
T ss_pred EEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccC
Confidence 455444344444444568899999999999865332211 1111111 24799999999999965321 1
Q ss_pred -----HHHHHHHHccCC-CEEEEecCCCcCHHHHHHHHHHHH
Q 022351 93 -----KEWITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 93 -----~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
++..+..+..+. .++.+||+++.|++++++.+.+.+
T Consensus 130 ~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 130 EPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred CCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 111122223444 789999999999999999887543
No 295
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.19 E-value=9.2e-06 Score=67.14 Aligned_cols=100 Identities=16% Similarity=0.077 Sum_probs=66.8
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HH----HhccCCCCCCcEEEEEecCCCCChhh--HHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQ----LRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITF 98 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~----l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~ 98 (298)
-|....+.+........+..+|.+++|+|...+.+... .. +... ...+.|+++|.||+||..... .++....
T Consensus 53 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~ 131 (161)
T cd04117 53 IWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKL 131 (161)
T ss_pred EEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHH
Confidence 57766656666666778999999999999876532111 11 1111 123689999999999964321 1222222
Q ss_pred HHccCCCEEEEecCCCcCHHHHHHHHHH
Q 022351 99 FDQQNCPSFGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~ 126 (298)
.+..+.+++.+||+++.|+++++..|.+
T Consensus 132 ~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 159 (161)
T cd04117 132 AKEYGMDFFETSACTNSNIKESFTRLTE 159 (161)
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence 2234567899999999999999988864
No 296
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.19 E-value=3.8e-06 Score=85.85 Aligned_cols=98 Identities=18% Similarity=0.193 Sum_probs=68.0
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh--hhHHHHHHHH----Hcc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP--TQFKEWITFF----DQQ 102 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~--~~~~~~~~~~----~~~ 102 (298)
||| ..+...+...+..+|++|+|+|+.++......+...+....+.|+|+++||+|+... +.+...+..+ ...
T Consensus 345 PGh-e~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~ 423 (787)
T PRK05306 345 PGH-EAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEW 423 (787)
T ss_pred CCC-ccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHh
Confidence 777 456666667789999999999998865544433333333468999999999999642 2222222111 111
Q ss_pred --CCCEEEEecCCCcCHHHHHHHHHHH
Q 022351 103 --NCPSFGVNSHNKDNVKEFLKFLQAH 127 (298)
Q Consensus 103 --~~~vi~iSa~~~~gi~~L~~~l~~~ 127 (298)
.++++++||+++.|+++|++.|...
T Consensus 424 g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 424 GGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred CCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 2579999999999999999988653
No 297
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.19 E-value=1.4e-05 Score=68.78 Aligned_cols=90 Identities=12% Similarity=0.028 Sum_probs=58.7
Q ss_pred HHHhcCCCCeEEEEEeCCCCCCccc-HH----HhccC--CCCCCcEEEEEecCCCCChhhH--HHHHHHHH-ccCCCEEE
Q 022351 39 IADRMPLVDIILEVRDARIPFSSEF-DQ----LRNHH--PFSSSRRILVLNKMDLASPTQF--KEWITFFD-QQNCPSFG 108 (298)
Q Consensus 39 i~~~l~~aDlVl~VvDa~~p~~~~~-~~----l~~~l--~~~~k~~IiVlNK~DL~~~~~~--~~~~~~~~-~~~~~vi~ 108 (298)
....+..+|++|+|+|+..+.+... .. +.+.. ...+.|+++|.||+|+...... +...+... ..+.+++.
T Consensus 74 ~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e 153 (198)
T cd04142 74 RFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLE 153 (198)
T ss_pred HHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEE
Confidence 3456889999999999987533221 11 11111 1246899999999999643211 11111122 23568899
Q ss_pred EecCCCcCHHHHHHHHHHHH
Q 022351 109 VNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 109 iSa~~~~gi~~L~~~l~~~i 128 (298)
+||++|.|++++++.+...+
T Consensus 154 ~Sak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 154 CSAKYNWHILLLFKELLISA 173 (198)
T ss_pred ecCCCCCCHHHHHHHHHHHh
Confidence 99999999999988876543
No 298
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.19 E-value=3.5e-06 Score=69.60 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
++|+++|.+|||||||++.+..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~ 22 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLM 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3789999999999999999983
No 299
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.19 E-value=4e-06 Score=79.24 Aligned_cols=120 Identities=20% Similarity=0.193 Sum_probs=90.4
Q ss_pred HHHhhhcceecccCC-C---------ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEE
Q 022351 10 KLAREIGTAVSQKKG-G---------GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRIL 79 (298)
Q Consensus 10 ~~~~~~g~~~~~~~~-~---------~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~Ii 79 (298)
.|+||.|.+-+.+-. + ..-||| +.+--.+.+.+..+|-|++|+||..++..+-.+..+-....+.+.|+
T Consensus 47 DlEkERGITILaKnTav~~~~~~INIvDTPGH-ADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIV 125 (603)
T COG1217 47 DLEKERGITILAKNTAVNYNGTRINIVDTPGH-ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIV 125 (603)
T ss_pred chhhhcCcEEEeccceeecCCeEEEEecCCCc-CCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEE
Confidence 478899998888775 2 344899 67888889999999999999999998777776654332236788999
Q ss_pred EEecCCCCC---hhhHHHHHHHHH-------ccCCCEEEEecCCC----------cCHHHHHHHHHHHHHh
Q 022351 80 VLNKMDLAS---PTQFKEWITFFD-------QQNCPSFGVNSHNK----------DNVKEFLKFLQAHVRN 130 (298)
Q Consensus 80 VlNK~DL~~---~~~~~~~~~~~~-------~~~~~vi~iSa~~~----------~gi~~L~~~l~~~i~~ 130 (298)
|+||+|-.. .+.+.+..+.|- ++.++++.-|+..| ..+..|.+.|.++++.
T Consensus 126 VvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 126 VINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 999999753 344555555553 45678999998776 3578888888888765
No 300
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.18 E-value=4e-06 Score=68.78 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
++|+++|.+|+|||||+|++..
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~ 22 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVK 22 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3789999999999999999983
No 301
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.18 E-value=2.8e-06 Score=70.19 Aligned_cols=21 Identities=33% Similarity=0.722 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~ 164 (298)
+|+++|.+|||||||+|.|.+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~ 21 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKT 21 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhh
Confidence 478999999999999999974
No 302
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.18 E-value=5.7e-06 Score=79.55 Aligned_cols=90 Identities=18% Similarity=0.161 Sum_probs=58.6
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCC---CcccHHHhccCCC-CCCcEEEEEecCCCCC--hhhH----HHHHHH
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPF---SSEFDQLRNHHPF-SSSRRILVLNKMDLAS--PTQF----KEWITF 98 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~---~~~~~~l~~~l~~-~~k~~IiVlNK~DL~~--~~~~----~~~~~~ 98 (298)
||| .++++.+...+..+|++++|+|+..+. .........++.. ...++++++||+|+.+ .+.. +++.++
T Consensus 93 pGh-~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~ 171 (426)
T TIGR00483 93 PGH-RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNL 171 (426)
T ss_pred CCH-HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHHHHH
Confidence 665 678888888889999999999998762 2221111111111 2357889999999974 2222 233333
Q ss_pred HHccC-----CCEEEEecCCCcCHHH
Q 022351 99 FDQQN-----CPSFGVNSHNKDNVKE 119 (298)
Q Consensus 99 ~~~~~-----~~vi~iSa~~~~gi~~ 119 (298)
++..+ .+++++||+++.|+.+
T Consensus 172 ~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 172 IKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHcCCCcccceEEEeeccccccccc
Confidence 43333 4689999999999875
No 303
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=9.3e-06 Score=78.13 Aligned_cols=98 Identities=13% Similarity=0.073 Sum_probs=70.6
Q ss_pred chhhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH------
Q 022351 28 YGPHMAAATRAIADR-MPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD------ 100 (298)
Q Consensus 28 fpghm~~~~~~i~~~-l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~------ 100 (298)
-|||+ ++..|+.. ..-+|+|++|+.+.++...+-.+-....+..+.|+++.+||+|.... ..+.....+-
T Consensus 208 TPGHa--AF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~ 284 (683)
T KOG1145|consen 208 TPGHA--AFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVV 284 (683)
T ss_pred CCcHH--HHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccH
Confidence 49996 34445544 67789999999999887776655555555689999999999997532 2333333332
Q ss_pred -ccCC--CEEEEecCCCcCHHHHHHHHHHHH
Q 022351 101 -QQNC--PSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 101 -~~~~--~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
..|. +++++||++++|++.|.+.+.-+.
T Consensus 285 E~~GGdVQvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 285 EDLGGDVQVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred HHcCCceeEEEeecccCCChHHHHHHHHHHH
Confidence 2232 689999999999999998876544
No 304
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.17 E-value=4.4e-06 Score=70.06 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=37.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGIL 211 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~ 211 (298)
...+|+++|.+|||||||+|.|.. ++.....+..|.+. ..+... ...+.++||||..
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~-----------~~~~~~~~t~~~~~--~~~~~~-~~~~~l~D~~G~~ 70 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLL-----------GEVVHTSPTIGSNV--EEIVYK-NIRFLMWDIGGQE 70 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHcc-----------CCCCCcCCccccce--EEEEEC-CeEEEEEECCCCH
Confidence 356899999999999999999973 12222333333332 223222 3358899999974
No 305
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.17 E-value=4e-06 Score=80.58 Aligned_cols=91 Identities=16% Similarity=0.136 Sum_probs=59.8
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCC--CCCcccHHHhccCCCCC-CcEEEEEecCCCCCh--hhH----HHHHHH
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARI--PFSSEFDQLRNHHPFSS-SRRILVLNKMDLASP--TQF----KEWITF 98 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~--p~~~~~~~l~~~l~~~~-k~~IiVlNK~DL~~~--~~~----~~~~~~ 98 (298)
-||| .+..+.+...+..+|++++|+|+.. +..........++...+ .++++++||+|+.+. +.. ++..+.
T Consensus 91 tpG~-~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~ 169 (425)
T PRK12317 91 CPGH-RDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVKEEVSKL 169 (425)
T ss_pred CCCc-ccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHHHHHHHH
Confidence 3676 6677777777899999999999987 44443333322222234 468999999999752 211 222233
Q ss_pred HHccC-----CCEEEEecCCCcCHHH
Q 022351 99 FDQQN-----CPSFGVNSHNKDNVKE 119 (298)
Q Consensus 99 ~~~~~-----~~vi~iSa~~~~gi~~ 119 (298)
+...+ .+++++||+++.|+++
T Consensus 170 l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 170 LKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred HHhhCCCcCcceEEEeecccCCCccc
Confidence 33333 3689999999999876
No 306
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.17 E-value=4.7e-06 Score=69.00 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHHh
Q 022351 143 VTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~ 163 (298)
++++++|.+|||||||+|++.
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~ 23 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFT 23 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 589999999999999999998
No 307
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.17 E-value=4.7e-06 Score=68.03 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~ 164 (298)
+++++|.+|||||||+|+++.
T Consensus 2 ki~i~G~~~~GKStli~~l~~ 22 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVE 22 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999999984
No 308
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.17 E-value=2.9e-06 Score=69.46 Aligned_cols=55 Identities=20% Similarity=0.302 Sum_probs=35.2
Q ss_pred EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~ 212 (298)
+|+++|.+|||||||+|++.+. ......+..|.+.. .+.+. ...+.++||||...
T Consensus 1 ki~iiG~~~~GKssli~~~~~~-----------~~~~~~~t~~~~~~--~~~~~-~~~~~i~D~~G~~~ 55 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLG-----------EVVTTIPTIGFNVE--TVEYK-NVSFTVWDVGGQDK 55 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcC-----------CCCCCCCCcCcceE--EEEEC-CEEEEEEECCCChh
Confidence 4789999999999999999841 12222333333322 22222 23588999999654
No 309
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.16 E-value=3.2e-06 Score=76.42 Aligned_cols=69 Identities=20% Similarity=0.246 Sum_probs=40.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhh-cchhhhhcCCccceeec-----CCCCeeeeeEEEEE-ccCCCEEEEeCCCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQI-GRITAAEKGKLRHATVS-----PQPGETKDIYSLKI-ASHPNIYVLDTPGILP 212 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~-~~~~~~~~~~~~~~~~~-----~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~ 212 (298)
+|+++|.+|+|||||+|+|+.. +.+.....-....+.+. ...|+|.+.....+ +.+.++.++||||...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH
Confidence 4799999999999999999742 22211000000111111 23477776554332 2344688999999764
No 310
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.16 E-value=3.4e-06 Score=72.63 Aligned_cols=57 Identities=25% Similarity=0.498 Sum_probs=35.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC-CCEEEEeCCCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH-PNIYVLDTPGILP 212 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~-~~~~liDTPGi~~ 212 (298)
+|+++|.+|||||||+|.+.. +.... ...|.++.+.. .+.+.+. -.+.|+||||...
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~-----------~~f~~-~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~ 61 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLA-----------QEFPE-EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQR 61 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHc-----------CCCCc-ccCCccccccceeEEEECCEEEEEEEEeCCCccc
Confidence 789999999999999999983 22211 12343333322 2222221 1367999999854
No 311
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.16 E-value=1.8e-05 Score=76.41 Aligned_cols=88 Identities=20% Similarity=0.238 Sum_probs=61.8
Q ss_pred HHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCcC
Q 022351 37 RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDN 116 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~g 116 (298)
+.....+..+|++++|+|+..+.+..+. +...+...++|+++|+||+|+... ..+.+ .+..+.+++.+||++ .|
T Consensus 274 ~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~-~~~~~---~~~~~~~~~~vSak~-~g 347 (442)
T TIGR00450 274 EKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN-SLEFF---VSSKVLNSSNLSAKQ-LK 347 (442)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc-chhhh---hhhcCCceEEEEEec-CC
Confidence 3455788999999999999877654333 333232357899999999999654 22221 223456788999997 68
Q ss_pred HHHHHHHHHHHHHh
Q 022351 117 VKEFLKFLQAHVRN 130 (298)
Q Consensus 117 i~~L~~~l~~~i~~ 130 (298)
++++++.+.+.+.+
T Consensus 348 I~~~~~~L~~~i~~ 361 (442)
T TIGR00450 348 IKALVDLLTQKINA 361 (442)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888777655
No 312
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.15 E-value=5.7e-06 Score=68.91 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.+|+++|.+|||||||+|+++.
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~ 24 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCA 24 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999983
No 313
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.15 E-value=7.6e-06 Score=67.96 Aligned_cols=102 Identities=18% Similarity=0.060 Sum_probs=65.5
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITF 98 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~ 98 (298)
-|..++..+........+..+|.+++|+|...+.+-.. ..+.......+.|++++.||+|+.+... .+.....
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~ 132 (168)
T cd04177 53 ILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSL 132 (168)
T ss_pred EEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHH
Confidence 35533334555566677889999999999876432111 1122222235789999999999965321 1222222
Q ss_pred HHccC-CCEEEEecCCCcCHHHHHHHHHHH
Q 022351 99 FDQQN-CPSFGVNSHNKDNVKEFLKFLQAH 127 (298)
Q Consensus 99 ~~~~~-~~vi~iSa~~~~gi~~L~~~l~~~ 127 (298)
.+..+ .+++.+||+++.|++++++++...
T Consensus 133 ~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~ 162 (168)
T cd04177 133 SQQWGNVPFYETSARKRTNVDEVFIDLVRQ 162 (168)
T ss_pred HHHcCCceEEEeeCCCCCCHHHHHHHHHHH
Confidence 22334 578999999999999999888654
No 314
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.15 E-value=4.9e-06 Score=70.59 Aligned_cols=59 Identities=25% Similarity=0.349 Sum_probs=37.1
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~ 212 (298)
....+|+++|.+|||||||+|.|.+ .+...+.+..+.+ ...+.+ .+..+.++||||...
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~-----------~~~~~~~~t~~~~--~~~~~~-~~~~~~~~D~~G~~~ 73 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKN-----------DRLAQHQPTQHPT--SEELAI-GNIKFTTFDLGGHQQ 73 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhc-----------CCCcccCCccccc--eEEEEE-CCEEEEEEECCCCHH
Confidence 3457999999999999999999983 2222222222222 122222 233578999999743
No 315
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.15 E-value=4.5e-06 Score=70.24 Aligned_cols=101 Identities=13% Similarity=0.011 Sum_probs=64.8
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChhhHH--------
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPTQFK-------- 93 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~~~~-------- 93 (298)
-|..++..+........+..+|++|+|+|...+.+..+. .+...+. ..+.|+++|.||+|+.+.....
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~ 132 (175)
T cd01874 53 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ 132 (175)
T ss_pred EEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccC
Confidence 477665555544444578999999999999876432221 1221111 2468999999999986532211
Q ss_pred -----HHHH-HHHccC-CCEEEEecCCCcCHHHHHHHHHH
Q 022351 94 -----EWIT-FFDQQN-CPSFGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 94 -----~~~~-~~~~~~-~~vi~iSa~~~~gi~~L~~~l~~ 126 (298)
+..+ ..++.+ ..++.+||+++.|++++++.+..
T Consensus 133 ~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 133 KPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred CCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 1111 112233 47899999999999999988764
No 316
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.15 E-value=4.7e-06 Score=70.65 Aligned_cols=58 Identities=22% Similarity=0.288 Sum_probs=35.9
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCcccee-ecCCCCeeeeeEEEEEccC-CCEEEEeCCCCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHAT-VSPQPGETKDIYSLKIASH-PNIYVLDTPGIL 211 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~-~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~ 211 (298)
++|+++|.+|||||||+|++.. +.... ..+..|.+.....+.+... -.+.++||||..
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~-----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~ 60 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTE-----------DEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQE 60 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence 3789999999999999999983 22211 2233333333333333222 136789999953
No 317
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.15 E-value=3.6e-06 Score=71.17 Aligned_cols=103 Identities=16% Similarity=0.022 Sum_probs=67.8
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChh-----------
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPT----------- 90 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~----------- 90 (298)
-|..+++.+.......++..+|.+|+|.|..++.+..+. .+...+. ..+.|+++|.||+||.+..
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~ 132 (176)
T cd04133 53 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASP 132 (176)
T ss_pred EEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCC
Confidence 566555555555555679999999999999876543321 1222111 2468999999999995421
Q ss_pred -hHHHHHHHHHccCC-CEEEEecCCCcCHHHHHHHHHHHH
Q 022351 91 -QFKEWITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 91 -~~~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
..++..+..+..+. .++.+||+++.|++++++.+.+.+
T Consensus 133 v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 133 ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred CCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 11222222233455 588999999999999999887654
No 318
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.14 E-value=2.6e-06 Score=70.48 Aligned_cols=100 Identities=18% Similarity=0.101 Sum_probs=62.6
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccC--CCCCCcEEEEEecCCCCChhhH---------
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHH--PFSSSRRILVLNKMDLASPTQF--------- 92 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l--~~~~k~~IiVlNK~DL~~~~~~--------- 92 (298)
-|..++..+........+..+|++++|+|+..+.+... ..+...+ ...+.|+++|+||+|+......
T Consensus 52 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 131 (171)
T cd00157 52 LWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKE 131 (171)
T ss_pred EEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCC
Confidence 45443333333333345789999999999986433221 1111111 1247999999999999755422
Q ss_pred ----HHHHHHHHccCC-CEEEEecCCCcCHHHHHHHHH
Q 022351 93 ----KEWITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQ 125 (298)
Q Consensus 93 ----~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~ 125 (298)
+...+.....+. +++.+||+++.|++++++.+.
T Consensus 132 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 169 (171)
T cd00157 132 PITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAI 169 (171)
T ss_pred ccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHh
Confidence 122222233444 789999999999999998875
No 319
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.14 E-value=6.1e-06 Score=70.09 Aligned_cols=101 Identities=14% Similarity=0.154 Sum_probs=67.1
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC--CCCCcEEEEEecCCCCCh------------
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP--FSSSRRILVLNKMDLASP------------ 89 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~--~~~k~~IiVlNK~DL~~~------------ 89 (298)
-|......+........+..+|++|+|+|...+.+..+ ..+...+. ..+.|+++|.||+||.+.
T Consensus 57 iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~ 136 (182)
T cd04172 57 LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQ 136 (182)
T ss_pred EEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCC
Confidence 57776666665555567999999999999987643322 11211111 146899999999998531
Q ss_pred --hhHHHHHHHHHccCC-CEEEEecCCCcC-HHHHHHHHHH
Q 022351 90 --TQFKEWITFFDQQNC-PSFGVNSHNKDN-VKEFLKFLQA 126 (298)
Q Consensus 90 --~~~~~~~~~~~~~~~-~vi~iSa~~~~g-i~~L~~~l~~ 126 (298)
-..++..++.++.+. .++.+||+++.+ ++++...+..
T Consensus 137 ~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 137 TPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred CCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 011223333334564 789999999998 9998887764
No 320
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.14 E-value=3.3e-06 Score=72.18 Aligned_cols=69 Identities=20% Similarity=0.308 Sum_probs=38.8
Q ss_pred EEEEEcCCCCchHHHHHHHhhh-cchhhhhcCCcccee---ecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQI-GRITAAEKGKLRHAT---VSPQPGETKDIYSLKIA-SHPNIYVLDTPGILP 212 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~-~~~~~~~~~~~~~~~---~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~ 212 (298)
+|+++|.+|||||||+|+|+.. +.......-...... .....|+|.......+. ....+.++||||...
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~ 77 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD 77 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH
Confidence 7999999999999999999852 111100000000000 01234556554433332 233588999999754
No 321
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.14 E-value=3e-06 Score=80.30 Aligned_cols=116 Identities=17% Similarity=0.141 Sum_probs=82.5
Q ss_pred HHHhhhcceecccCC---------C------ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHH--HhccCCC
Q 022351 10 KLAREIGTAVSQKKG---------G------GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQ--LRNHHPF 72 (298)
Q Consensus 10 ~~~~~~g~~~~~~~~---------~------~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~--l~~~l~~ 72 (298)
.|+||.|.+.....- - -.-|||. .+.-.+.+.+.-|.-.|+|+||..+...+... ...+ .
T Consensus 50 diERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV-DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl--e 126 (603)
T COG0481 50 DIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV-DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL--E 126 (603)
T ss_pred hhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc-ceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH--H
Confidence 478999988776553 1 2238994 56666777888899999999999876544321 1111 3
Q ss_pred CCCcEEEEEecCCCCC--hhhHHHHHHHHHccCC---CEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 73 SSSRRILVLNKMDLAS--PTQFKEWITFFDQQNC---PSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 73 ~~k~~IiVlNK~DL~~--~~~~~~~~~~~~~~~~---~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+..++-|+||+||.. ++.+..-++.. .|+ +.+.+||++|.|++++++.|.+.++.
T Consensus 127 ~~LeIiPViNKIDLP~Adpervk~eIe~~--iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 127 NNLEIIPVLNKIDLPAADPERVKQEIEDI--IGIDASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred cCcEEEEeeecccCCCCCHHHHHHHHHHH--hCCCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence 6788999999999954 33333333332 233 57899999999999999999988775
No 322
>PLN03108 Rab family protein; Provisional
Probab=98.14 E-value=1.1e-05 Score=69.92 Aligned_cols=103 Identities=17% Similarity=0.062 Sum_probs=67.3
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-H-HhccC--CCCCCcEEEEEecCCCCChh--hHHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-Q-LRNHH--PFSSSRRILVLNKMDLASPT--QFKEWITFF 99 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-~-l~~~l--~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~ 99 (298)
-|...............+..+|.+++|+|+..+.+.... . +.... .....|+++|.||+||.... ..+...++.
T Consensus 59 l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~ 138 (210)
T PLN03108 59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFA 138 (210)
T ss_pred EEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHH
Confidence 455444455555566788899999999999865332211 1 11111 12468999999999996532 122223333
Q ss_pred HccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351 100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
+..+.+++.+||+++.|+++++.++...+
T Consensus 139 ~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 139 KEHGLIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 44567899999999999999887766544
No 323
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.14 E-value=4.7e-06 Score=69.04 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
++|+++|.+|||||||+|+++.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~ 23 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVK 23 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999983
No 324
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.13 E-value=1.6e-05 Score=66.57 Aligned_cols=103 Identities=17% Similarity=0.065 Sum_probs=67.0
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHH
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFF 99 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~ 99 (298)
+.||+ .+........+..+|.+++|+|..+...... ..+.+.....+.|+++|.||+|+..... ........
T Consensus 55 D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~ 133 (180)
T cd04137 55 DTAGQ-DEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELA 133 (180)
T ss_pred ECCCh-HhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHH
Confidence 34555 4444444567888999999999876321111 1122221224689999999999964321 12222233
Q ss_pred HccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+..+.+++.+||+++.|+.+++.++.+.+..
T Consensus 134 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 134 ESWGAAFLESSARENENVEEAFELLIEEIEK 164 (180)
T ss_pred HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3445678999999999999999999887765
No 325
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.13 E-value=5.5e-06 Score=69.19 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=36.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~ 212 (298)
+.++|+++|.+|||||||+++|.. +..... .|.++.+...+.. ..-.+.++||||...
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~-----------~~~~~~--~~t~g~~~~~~~~-~~~~~~l~Dt~G~~~ 65 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKL-----------GQSVTT--IPTVGFNVETVTY-KNVKFNVWDVGGQDK 65 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHcc-----------CCCccc--cCCcccceEEEEE-CCEEEEEEECCCCHH
Confidence 457999999999999999999972 111112 2322222222222 223588999999743
No 326
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.12 E-value=4e-06 Score=71.39 Aligned_cols=104 Identities=15% Similarity=0.056 Sum_probs=65.8
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHh-ccCC-CCCCcEEEEEecCCCCChhhHH--------
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLR-NHHP-FSSSRRILVLNKMDLASPTQFK-------- 93 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~-~~l~-~~~k~~IiVlNK~DL~~~~~~~-------- 93 (298)
-|..+++.+........+..+|++++|+|...+.+..+. .+. .+.. ..+.|+++|.||+||.......
T Consensus 52 i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~ 131 (189)
T cd04134 52 LWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGK 131 (189)
T ss_pred EEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccC
Confidence 465554444433334568899999999998876433221 111 1111 2478999999999996543211
Q ss_pred ------HHHHHHHccC-CCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 94 ------EWITFFDQQN-CPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 94 ------~~~~~~~~~~-~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
+..+.....+ ..++.+||+++.|+++++.++.+.+-
T Consensus 132 ~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 132 HTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence 1112222233 46899999999999999999887654
No 327
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.12 E-value=5.7e-06 Score=80.55 Aligned_cols=90 Identities=20% Similarity=0.174 Sum_probs=60.9
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHH---HhccCCCCCCcEEEEEecCCCCCh--hhHHHHHHH----
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQ---LRNHHPFSSSRRILVLNKMDLASP--TQFKEWITF---- 98 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~---l~~~l~~~~k~~IiVlNK~DL~~~--~~~~~~~~~---- 98 (298)
-||| .+..+.+...+..+|++++|+|+..+....... +...+ ..+++++++||+|+.+. +.+....+.
T Consensus 114 TPGh-~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l--g~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~ 190 (474)
T PRK05124 114 TPGH-EQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLL--GIKHLVVAVNKMDLVDYSEEVFERIREDYLTF 190 (474)
T ss_pred CCCc-HHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHh--CCCceEEEEEeeccccchhHHHHHHHHHHHHH
Confidence 4888 567777777789999999999998876544332 22221 23578899999999742 223322222
Q ss_pred HHcc----CCCEEEEecCCCcCHHHH
Q 022351 99 FDQQ----NCPSFGVNSHNKDNVKEF 120 (298)
Q Consensus 99 ~~~~----~~~vi~iSa~~~~gi~~L 120 (298)
+... ..+++++||+++.|+.++
T Consensus 191 ~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 191 AEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHhcCCCCCceEEEEEeecCCCcccc
Confidence 2222 357999999999998754
No 328
>PRK12735 elongation factor Tu; Reviewed
Probab=98.12 E-value=4.8e-06 Score=79.31 Aligned_cols=71 Identities=20% Similarity=0.289 Sum_probs=46.9
Q ss_pred CCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccc--------eeecCCCCeeeeeEEEEEc-cCCCEEEEe
Q 022351 136 YDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRH--------ATVSPQPGETKDIYSLKIA-SHPNIYVLD 206 (298)
Q Consensus 136 ~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~--------~~~~~~pg~T~~~~~~~~~-~~~~~~liD 206 (298)
|....+.++++++|.+|+|||||+|+|+.... ..++.+. .......|+|.+.....+. .+.++.++|
T Consensus 6 ~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~----~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iD 81 (396)
T PRK12735 6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLA----KKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVD 81 (396)
T ss_pred cCCCCCeEEEEEECcCCCCHHHHHHHHHHhhh----hcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEE
Confidence 34557789999999999999999999985210 0111111 1112356888887655443 334689999
Q ss_pred CCCC
Q 022351 207 TPGI 210 (298)
Q Consensus 207 TPGi 210 (298)
|||.
T Consensus 82 tPGh 85 (396)
T PRK12735 82 CPGH 85 (396)
T ss_pred CCCH
Confidence 9996
No 329
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.12 E-value=5.3e-06 Score=68.41 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHHh
Q 022351 143 VTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~ 163 (298)
.+|+++|.+|||||||+|++.
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~ 22 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFV 22 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 330
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.12 E-value=4.9e-06 Score=68.83 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
++|+++|.+|||||||+|+|+.
T Consensus 1 iki~i~G~~~~GKSsli~~l~~ 22 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTT 22 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999984
No 331
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.12 E-value=8.4e-06 Score=67.06 Aligned_cols=21 Identities=33% Similarity=0.653 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHHh
Q 022351 143 VTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~ 163 (298)
++|+++|.+|||||||+|+|.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~ 21 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFH 21 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 378999999999999999998
No 332
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.11 E-value=6e-06 Score=70.36 Aligned_cols=20 Identities=45% Similarity=0.627 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHh
Q 022351 144 TVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~ 163 (298)
+|+++|.+|||||||+|.+.
T Consensus 2 Ki~vvG~~~vGKTSli~~~~ 21 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFK 21 (191)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 78999999999999999997
No 333
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.11 E-value=6.4e-06 Score=70.75 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~ 163 (298)
..++|+++|.+|||||||+|.+.
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~ 27 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFA 27 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHh
Confidence 35799999999999999999998
No 334
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=1.1e-05 Score=68.86 Aligned_cols=105 Identities=18% Similarity=0.033 Sum_probs=77.3
Q ss_pred CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-HHhccCC---CCCCcEEEEEecCCCCChhhH--HHHHHH
Q 022351 25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-QLRNHHP---FSSSRRILVLNKMDLASPTQF--KEWITF 98 (298)
Q Consensus 25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-~l~~~l~---~~~k~~IiVlNK~DL~~~~~~--~~~~~~ 98 (298)
--|....+.++...+..++..|+-|++|+|.....+..+. .+.+.+. ..+.+.++|-||+|+.....+ +.-..+
T Consensus 64 QiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~l 143 (207)
T KOG0078|consen 64 QIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEAL 143 (207)
T ss_pred EEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHH
Confidence 3799999999999999999999999999999865443332 1222221 247899999999999763221 222223
Q ss_pred HHccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
..+.|..++.+||+++.++++..-.|...+.
T Consensus 144 A~e~G~~F~EtSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 144 AREYGIKFFETSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred HHHhCCeEEEccccCCCCHHHHHHHHHHHHH
Confidence 3356889999999999999988777766554
No 335
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.11 E-value=4.5e-06 Score=68.73 Aligned_cols=21 Identities=43% Similarity=0.562 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~ 164 (298)
+|+++|.+|||||||+|++.+
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999999983
No 336
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.10 E-value=3.6e-06 Score=76.11 Aligned_cols=94 Identities=18% Similarity=0.171 Sum_probs=60.4
Q ss_pred hHHHHH-HHHHHhcCCCCeEEEEEeCCCCCC--ccc--H----HHhccCC-CCCCcEEEEEecCCCCChhh--HHHHHHH
Q 022351 31 HMAAAT-RAIADRMPLVDIILEVRDARIPFS--SEF--D----QLRNHHP-FSSSRRILVLNKMDLASPTQ--FKEWITF 98 (298)
Q Consensus 31 hm~~~~-~~i~~~l~~aDlVl~VvDa~~p~~--~~~--~----~l~~~l~-~~~k~~IiVlNK~DL~~~~~--~~~~~~~ 98 (298)
||++.+ -...+.+++++++++|+|...+.. .++ . ++..+-+ ...+|.+||+||+|+...+. ++++.+.
T Consensus 259 h~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~ 338 (366)
T KOG1489|consen 259 HMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKR 338 (366)
T ss_pred cccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHH
Confidence 455554 345566778999999999976521 111 1 1211211 25789999999999953321 1333333
Q ss_pred HHccCCCEEEEecCCCcCHHHHHHHHHH
Q 022351 99 FDQQNCPSFGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~ 126 (298)
+ .+..++++||++++|+.+|++.++.
T Consensus 339 l--q~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 339 L--QNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred c--CCCcEEEeeeccccchHHHHHHHhh
Confidence 3 1225899999999999999988764
No 337
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=1.1e-05 Score=73.22 Aligned_cols=104 Identities=19% Similarity=0.234 Sum_probs=75.0
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC--cccHHHhccCCCCCCcEEEEEecCCCCChhhH----HHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFS--SEFDQLRNHHPFSSSRRILVLNKMDLASPTQF----KEWITFF 99 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~--~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~----~~~~~~~ 99 (298)
..-||| +--+-.|..-..-.|-.++|++|..|.. ...+.|..+---.-+.++++-||+||+..+.. +++.++.
T Consensus 91 VDaPGH-e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~Fv 169 (415)
T COG5257 91 VDAPGH-ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFV 169 (415)
T ss_pred eeCCch-HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHHHHHHHHHHHh
Confidence 445899 5567777777788899999999986532 22233332211256889999999999987542 3344444
Q ss_pred H---ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 100 D---QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 100 ~---~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+ ..+.+++++||..+.+++.|+++|.++++.
T Consensus 170 kGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 170 KGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred cccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 3 234589999999999999999999998875
No 338
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.10 E-value=1.1e-05 Score=81.50 Aligned_cols=91 Identities=21% Similarity=0.241 Sum_probs=61.2
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCC-CCCcEEEEEecCCCCC--hhhHHHHHH----HHH
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPF-SSSRRILVLNKMDLAS--PTQFKEWIT----FFD 100 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~-~~k~~IiVlNK~DL~~--~~~~~~~~~----~~~ 100 (298)
-||| .++.+.+...+..+|++++|+|+..+......+...++.. ..+++++++||+|+.+ .+..+...+ +++
T Consensus 111 tPG~-~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~ 189 (632)
T PRK05506 111 TPGH-EQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAA 189 (632)
T ss_pred CCCh-HHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHHHHHHHHH
Confidence 3888 5667777788999999999999988766554333222222 2367888999999974 222222222 222
Q ss_pred ccCC---CEEEEecCCCcCHHH
Q 022351 101 QQNC---PSFGVNSHNKDNVKE 119 (298)
Q Consensus 101 ~~~~---~vi~iSa~~~~gi~~ 119 (298)
..++ +++++||+++.|+.+
T Consensus 190 ~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 190 KLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HcCCCCccEEEEecccCCCccc
Confidence 3343 589999999999873
No 339
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.10 E-value=8.4e-06 Score=69.00 Aligned_cols=22 Identities=23% Similarity=0.602 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHHh
Q 022351 142 TVTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~ 163 (298)
.++|+++|.+|||||||+|++.
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~ 24 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLK 24 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999997
No 340
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.10 E-value=1.5e-05 Score=69.82 Aligned_cols=89 Identities=25% Similarity=0.200 Sum_probs=59.7
Q ss_pred hcC-CCCeEEEEEeCCCCCCccc-HHH----hccCCCCCCcEEEEEecCCCCChhhH--HHHHHHHHccCCCEEEEecCC
Q 022351 42 RMP-LVDIILEVRDARIPFSSEF-DQL----RNHHPFSSSRRILVLNKMDLASPTQF--KEWITFFDQQNCPSFGVNSHN 113 (298)
Q Consensus 42 ~l~-~aDlVl~VvDa~~p~~~~~-~~l----~~~l~~~~k~~IiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~iSa~~ 113 (298)
.+. .+|++++|+|+.++.+... ..+ .......+.|+++|.||+|+.+...+ +...+.....+.+++.+||++
T Consensus 68 ~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~ 147 (221)
T cd04148 68 CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGL 147 (221)
T ss_pred HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCC
Confidence 345 8999999999987633221 111 11111247899999999999654321 112222223466889999999
Q ss_pred CcCHHHHHHHHHHHHHh
Q 022351 114 KDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 114 ~~gi~~L~~~l~~~i~~ 130 (298)
+.|++++++.+...+..
T Consensus 148 ~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 148 QHNVDELLEGIVRQIRL 164 (221)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999887753
No 341
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.10 E-value=1.3e-05 Score=83.89 Aligned_cols=101 Identities=18% Similarity=0.135 Sum_probs=67.2
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhh----------------
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ---------------- 91 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~---------------- 91 (298)
-||| ..+..........+|++++|+|+..++..........+...++|+++|+||+|+.+...
T Consensus 533 TPGh-e~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~ 611 (1049)
T PRK14845 533 TPGH-EAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQ 611 (1049)
T ss_pred CCCc-HHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHH
Confidence 3676 44544445567889999999999876655544444443346789999999999974211
Q ss_pred --HHHH-------HHHHHcc---------------CCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 92 --FKEW-------ITFFDQQ---------------NCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 92 --~~~~-------~~~~~~~---------------~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
.++. ...+.+. ..+++++||++|+|+++|+.+|....+
T Consensus 612 ~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 612 HALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred HHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 0111 0011111 237899999999999999998875544
No 342
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.09 E-value=6.8e-06 Score=70.62 Aligned_cols=100 Identities=15% Similarity=0.004 Sum_probs=63.7
Q ss_pred CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCCh-----------
Q 022351 25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASP----------- 89 (298)
Q Consensus 25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~----------- 89 (298)
.-|......+..+ ..++..+|++|+|+|..++.+..+. .+...+. ..+.|+++|.||+||...
T Consensus 69 ~iwDTaG~~~~~~--~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~ 146 (195)
T cd01873 69 RLWDTFGDHDKDR--RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRP 146 (195)
T ss_pred EEEeCCCChhhhh--cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccc
Confidence 3677533333222 2468999999999999876443221 1221111 146899999999998631
Q ss_pred --------h--hHHHHHHHHHccCCCEEEEecCCCcCHHHHHHHHHH
Q 022351 90 --------T--QFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 90 --------~--~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~ 126 (298)
. ..++..+..++.+.+++.+||+++.|++++++.+.+
T Consensus 147 ~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 147 LARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred cccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 0 112222333345678899999999999999887753
No 343
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.09 E-value=6.1e-06 Score=68.56 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHHh
Q 022351 143 VTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~ 163 (298)
++++++|.||||||||+|++.
T Consensus 2 ~ki~liG~~~~GKTsli~~~~ 22 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFV 22 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 344
>PRK10218 GTP-binding protein; Provisional
Probab=98.09 E-value=7.9e-06 Score=81.57 Aligned_cols=102 Identities=19% Similarity=0.148 Sum_probs=73.6
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh---hhHHHHHHHHHc---
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP---TQFKEWITFFDQ--- 101 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~---~~~~~~~~~~~~--- 101 (298)
.||| ..+...+...+..+|.+|+|+|+..........+...+...+.|.++++||+|+... ..+++..+.+..
T Consensus 75 TPG~-~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~ 153 (607)
T PRK10218 75 TPGH-ADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDA 153 (607)
T ss_pred CCCc-chhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCc
Confidence 3666 567777888999999999999998765554444433333468899999999998532 234445555422
Q ss_pred ----cCCCEEEEecCCCc----------CHHHHHHHHHHHHHh
Q 022351 102 ----QNCPSFGVNSHNKD----------NVKEFLKFLQAHVRN 130 (298)
Q Consensus 102 ----~~~~vi~iSa~~~~----------gi~~L~~~l~~~i~~ 130 (298)
..++++++||.++. ++..|++.+...++.
T Consensus 154 ~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 154 TDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred cccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 24679999999997 588888888877764
No 345
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.09 E-value=6.1e-06 Score=67.58 Aligned_cols=20 Identities=40% Similarity=0.575 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHHh
Q 022351 144 TVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~ 163 (298)
+|+++|.||||||||+|+++
T Consensus 2 ki~~~G~~~~GKTsl~~~l~ 21 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFM 21 (164)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999998
No 346
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.09 E-value=8.7e-06 Score=68.21 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCchHHHHHHHh
Q 022351 142 TVTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~ 163 (298)
.++|+++|.+|||||||+|++.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~ 25 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYT 25 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHh
Confidence 4789999999999999999997
No 347
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.08 E-value=8.2e-06 Score=67.89 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHHh
Q 022351 144 TVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~ 163 (298)
+|+++|.+|||||||+|+++
T Consensus 2 ki~vvG~~~vGKTsli~~~~ 21 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHL 21 (166)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999998
No 348
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=2.3e-05 Score=66.30 Aligned_cols=105 Identities=17% Similarity=0.137 Sum_probs=76.7
Q ss_pred CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhhH--HHHHH
Q 022351 25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQF--KEWIT 97 (298)
Q Consensus 25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~~--~~~~~ 97 (298)
-.|....++++.-.+..+...|+-||+|.|.+.-.+..+ .++.++. ..+.|.++|.||+|+.+...+ ++..+
T Consensus 61 QIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~~~v~~~~a~~ 139 (205)
T KOG0084|consen 61 QIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYA-SENVPKLLVGNKCDLTEKRVVSTEEAQE 139 (205)
T ss_pred EeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhc-cCCCCeEEEeeccccHhheecCHHHHHH
Confidence 379999999999999999999999999999986322222 1222221 246799999999999754322 22223
Q ss_pred HHHccCCC-EEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 98 FFDQQNCP-SFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 98 ~~~~~~~~-vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+..+.+.+ ++.+||+...++++.+..+...+..
T Consensus 140 fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~ 173 (205)
T KOG0084|consen 140 FADELGIPIFLETSAKDSTNVEDAFLTLAKELKQ 173 (205)
T ss_pred HHHhcCCcceeecccCCccCHHHHHHHHHHHHHH
Confidence 33356777 8999999999999988888776655
No 349
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.08 E-value=4.4e-06 Score=69.26 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHHh
Q 022351 144 TVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~ 163 (298)
+|+++|.||||||||+|+|.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~ 22 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQ 22 (158)
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 69999999999999999987
No 350
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.08 E-value=5.1e-06 Score=69.50 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~ 164 (298)
+|+++|.+|||||||+|+|++
T Consensus 2 ni~~vG~~~~GKssL~~~l~~ 22 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLE 22 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHH
Confidence 689999999999999999985
No 351
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.08 E-value=7.4e-06 Score=81.57 Aligned_cols=61 Identities=25% Similarity=0.345 Sum_probs=44.1
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE--ccCCCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI--ASHPNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~--~~~~~~~liDTPGi~~ 212 (298)
.+...|+++|.+|+|||||+|+|.+ . .......+|+|.++..+.+ .+...+.++||||-..
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~-----------~-~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~ 147 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRK-----------T-KVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEA 147 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh-----------C-CcccccCCceeecceEEEEEECCCcEEEEEECCCCcc
Confidence 3556899999999999999999983 1 1223445788888765443 2333699999999643
No 352
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.08 E-value=1.1e-05 Score=66.82 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCchHHHHHHHh
Q 022351 142 TVTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~ 163 (298)
..+++++|.+|||||||++++.
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~ 28 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFT 28 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999997
No 353
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.07 E-value=1.1e-05 Score=64.66 Aligned_cols=83 Identities=22% Similarity=0.249 Sum_probs=50.8
Q ss_pred hcCCCCeEEEEEeCCCC-------CCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHcc-CCCEEEEecCC
Q 022351 42 RMPLVDIILEVRDARIP-------FSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQ-NCPSFGVNSHN 113 (298)
Q Consensus 42 ~l~~aDlVl~VvDa~~p-------~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~-~~~vi~iSa~~ 113 (298)
...+++.++.++|.... .......+..... .+.|+++++||+|+............+... ..+++++||.+
T Consensus 70 ~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 148 (161)
T TIGR00231 70 YYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAET 148 (161)
T ss_pred HHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCC
Confidence 34455555555554433 2122222333332 278999999999998654233333333222 34789999999
Q ss_pred CcCHHHHHHHHH
Q 022351 114 KDNVKEFLKFLQ 125 (298)
Q Consensus 114 ~~gi~~L~~~l~ 125 (298)
+.|++++.++|.
T Consensus 149 ~~gv~~~~~~l~ 160 (161)
T TIGR00231 149 GKNIDSAFKIVE 160 (161)
T ss_pred CCCHHHHHHHhh
Confidence 999999988874
No 354
>PRK00049 elongation factor Tu; Reviewed
Probab=98.07 E-value=7.8e-06 Score=77.88 Aligned_cols=71 Identities=20% Similarity=0.296 Sum_probs=47.0
Q ss_pred CCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccc--------eeecCCCCeeeeeEEEEEc-cCCCEEEEe
Q 022351 136 YDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRH--------ATVSPQPGETKDIYSLKIA-SHPNIYVLD 206 (298)
Q Consensus 136 ~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~--------~~~~~~pg~T~~~~~~~~~-~~~~~~liD 206 (298)
|....+.++++++|.+++|||||+++|+.... ..++... ......+|+|.+.....+. .+.++.++|
T Consensus 6 ~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~----~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iD 81 (396)
T PRK00049 6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLA----KKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVD 81 (396)
T ss_pred ccCCCCEEEEEEEeECCCCHHHHHHHHHHhhh----hccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEE
Confidence 34456779999999999999999999985311 0011110 0111257889887755543 334688999
Q ss_pred CCCC
Q 022351 207 TPGI 210 (298)
Q Consensus 207 TPGi 210 (298)
|||.
T Consensus 82 tPG~ 85 (396)
T PRK00049 82 CPGH 85 (396)
T ss_pred CCCH
Confidence 9996
No 355
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.07 E-value=6.7e-06 Score=68.96 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.+|+++|.||||||||+|+++.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~ 23 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVE 23 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999999983
No 356
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.06 E-value=1.1e-05 Score=69.23 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHHh
Q 022351 143 VTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~ 163 (298)
++|+++|.+|||||||+|.++
T Consensus 1 ~KivivG~~~vGKTsli~~l~ 21 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYV 21 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 378999999999999999998
No 357
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=4.4e-05 Score=64.61 Aligned_cols=105 Identities=19% Similarity=0.106 Sum_probs=77.3
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCCC--C-CCcEEEEEecCCCCChhhHH--HHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHPF--S-SSRRILVLNKMDLASPTQFK--EWITF 98 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~~--~-~k~~IiVlNK~DL~~~~~~~--~~~~~ 98 (298)
-|...+++++.-.+..++.++.++|.|.|..+-.+-.+ ..|.....+ . +.-+++|.||.||++..++. +-...
T Consensus 75 lWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~k 154 (221)
T KOG0094|consen 75 LWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERK 154 (221)
T ss_pred EEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHH
Confidence 79999999999999999999999999999986433222 223333222 2 35577899999999875432 22222
Q ss_pred HHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
-++.+..++.+||+.|.+++++...|...+++
T Consensus 155 Akel~a~f~etsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 155 AKELNAEFIETSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred HHHhCcEEEEecccCCCCHHHHHHHHHHhccC
Confidence 33556678999999999999999988877665
No 358
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.05 E-value=7.7e-06 Score=67.06 Aligned_cols=21 Identities=43% Similarity=0.537 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHHh
Q 022351 143 VTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~ 163 (298)
.+|+++|.+|||||||+|++.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~ 22 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFV 22 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999998
No 359
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.05 E-value=6.1e-06 Score=67.21 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~ 164 (298)
+|+++|.+|||||||+|++++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~ 21 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVK 21 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999983
No 360
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=4.9e-06 Score=70.06 Aligned_cols=104 Identities=18% Similarity=0.142 Sum_probs=77.2
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCCh--hhHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASP--TQFKEWITF 98 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~--~~~~~~~~~ 98 (298)
-|..++.++.--...-++..|+.+|.|.|..+..+... .+|.+... .+.-+.+|.||+||... -..++...+
T Consensus 58 IWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~y 136 (200)
T KOG0092|consen 58 IWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAY 136 (200)
T ss_pred EEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHH
Confidence 69999888877777778999999999999986432211 12222211 23445569999999873 244566667
Q ss_pred HHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+..+..++.+||+++.++++|...|.+.++.
T Consensus 137 Ae~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 137 AESQGLLFFETSAKTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred HHhcCCEEEEEecccccCHHHHHHHHHHhccC
Confidence 77788899999999999999999999888775
No 361
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.05 E-value=1e-05 Score=68.50 Aligned_cols=57 Identities=26% Similarity=0.358 Sum_probs=35.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGI 210 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi 210 (298)
....+++++|.+|||||||+|+|.+ .+.....+..+.+ ...+.+. +..+.++||||-
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~-----------~~~~~~~~T~~~~--~~~i~~~-~~~~~l~D~~G~ 73 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKD-----------DRLAQHVPTLHPT--SEELTIG-NIKFKTFDLGGH 73 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc-----------CCCcccCCccCcc--eEEEEEC-CEEEEEEECCCC
Confidence 3467899999999999999999983 1111222222222 1222232 335789999995
No 362
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.05 E-value=1.6e-05 Score=76.82 Aligned_cols=92 Identities=14% Similarity=0.122 Sum_probs=61.1
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-------cccHHHhccCCCCCCc-EEEEEecCCCC--C--hhhHH-
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFS-------SEFDQLRNHHPFSSSR-RILVLNKMDLA--S--PTQFK- 93 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~-------~~~~~l~~~l~~~~k~-~IiVlNK~DL~--~--~~~~~- 93 (298)
.-||| .++.+.+...+..+|++++|+|+..+.. ....+...++...+.| +|+++||+|.. + .+..+
T Consensus 91 DtPGh-~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~ 169 (446)
T PTZ00141 91 DAPGH-RDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDE 169 (446)
T ss_pred ECCCh-HHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhHHHHHH
Confidence 34898 6788999999999999999999987642 2222222233335666 56899999943 2 22222
Q ss_pred ---HHHHHHHccC-----CCEEEEecCCCcCHHH
Q 022351 94 ---EWITFFDQQN-----CPSFGVNSHNKDNVKE 119 (298)
Q Consensus 94 ---~~~~~~~~~~-----~~vi~iSa~~~~gi~~ 119 (298)
+..+.+...+ .+++++|+.+++|+.+
T Consensus 170 i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 170 IKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred HHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 3333343333 4689999999999853
No 363
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.05 E-value=2.4e-05 Score=78.01 Aligned_cols=101 Identities=18% Similarity=0.128 Sum_probs=66.6
Q ss_pred cc-hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhh--------------
Q 022351 27 WY-GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ-------------- 91 (298)
Q Consensus 27 wf-pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~-------------- 91 (298)
|. ||| ..+.......+..+|++++|+|++............++...+.|+++++||+|+.+...
T Consensus 76 iDTPG~-e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~ 154 (586)
T PRK04004 76 IDTPGH-EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ 154 (586)
T ss_pred EECCCh-HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence 44 555 56666666678899999999999875544433333333346899999999999863110
Q ss_pred ---HH--------HHHHHHHcc---------------CCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351 92 ---FK--------EWITFFDQQ---------------NCPSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 92 ---~~--------~~~~~~~~~---------------~~~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
+. +...++... ..+++++||.+++|+++|++.+....
T Consensus 155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 00 111122211 23689999999999999988876433
No 364
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.04 E-value=1e-05 Score=68.36 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=65.8
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC--CCCCcEEEEEecCCCCCh------------
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP--FSSSRRILVLNKMDLASP------------ 89 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~--~~~k~~IiVlNK~DL~~~------------ 89 (298)
-|....+.+........+..+|++|+|+|...+.+-.+ ..+...+. ..+.|+++|.||+||.+.
T Consensus 53 iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~ 132 (178)
T cd04131 53 LWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQ 132 (178)
T ss_pred EEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCC
Confidence 57766556555555567899999999999987644322 11211111 246899999999998531
Q ss_pred --hhHHHHHHHHHccCC-CEEEEecCCCcC-HHHHHHHHHH
Q 022351 90 --TQFKEWITFFDQQNC-PSFGVNSHNKDN-VKEFLKFLQA 126 (298)
Q Consensus 90 --~~~~~~~~~~~~~~~-~vi~iSa~~~~g-i~~L~~~l~~ 126 (298)
-..++..++.++.+. .++.+||+++++ ++++...+..
T Consensus 133 ~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 133 APVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred CCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHH
Confidence 011222233334565 689999999995 9998887765
No 365
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.04 E-value=1.6e-05 Score=67.33 Aligned_cols=58 Identities=17% Similarity=0.282 Sum_probs=36.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGIL 211 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~ 211 (298)
...++|+++|.+|||||||++.+.. +......+..|.. ...+.. ..-.+.++||||..
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~-----------~~~~~~~~T~~~~--~~~~~~-~~~~~~l~D~~G~~ 72 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKL-----------GEVVTTIPTIGFN--VETVEY-KNLKFTMWDVGGQD 72 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhc-----------CCccccCCccccc--eEEEEE-CCEEEEEEECCCCH
Confidence 3457999999999999999999962 1222222222222 222222 22358899999974
No 366
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.04 E-value=1.1e-05 Score=67.10 Aligned_cols=101 Identities=11% Similarity=0.023 Sum_probs=62.3
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccC--CCCCCcEEEEEecCCCCChhhH----------
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHH--PFSSSRRILVLNKMDLASPTQF---------- 92 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l--~~~~k~~IiVlNK~DL~~~~~~---------- 92 (298)
|..+............+..+|++++|+|..++.+..+. .+...+ ...+.|+++|.||+|+.+....
T Consensus 53 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~ 132 (174)
T cd04135 53 YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEK 132 (174)
T ss_pred EeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCC
Confidence 55433344333334568899999999999875332211 121111 1357999999999998643211
Q ss_pred ----HHHHHHHHccCC-CEEEEecCCCcCHHHHHHHHHHH
Q 022351 93 ----KEWITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQAH 127 (298)
Q Consensus 93 ----~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~~ 127 (298)
+......+..+. +++.+||+++.|++++++.+...
T Consensus 133 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 133 PVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHH
Confidence 111112223343 68899999999999999887643
No 367
>PLN03126 Elongation factor Tu; Provisional
Probab=98.04 E-value=2.1e-05 Score=76.57 Aligned_cols=89 Identities=11% Similarity=-0.021 Sum_probs=61.6
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCc-EEEEEecCCCCChhhH-H----HHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMDLASPTQF-K----EWITFF 99 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~-~IiVlNK~DL~~~~~~-~----~~~~~~ 99 (298)
-.-||| .++...+...+..+|++++|+|+..+......+...++...++| +++++||+|+.+.+.. + +..+++
T Consensus 149 iDtPGh-~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l 227 (478)
T PLN03126 149 VDCPGH-ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELL 227 (478)
T ss_pred EECCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHH
Confidence 345888 66888888889999999999999987665554444443345777 6789999999874432 2 223334
Q ss_pred Hcc-----CCCEEEEecCCCc
Q 022351 100 DQQ-----NCPSFGVNSHNKD 115 (298)
Q Consensus 100 ~~~-----~~~vi~iSa~~~~ 115 (298)
... ..+++++|+.++.
T Consensus 228 ~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 228 SSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred HhcCCCcCcceEEEEEccccc
Confidence 333 3468899987763
No 368
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.04 E-value=8.5e-06 Score=67.58 Aligned_cols=21 Identities=43% Similarity=0.570 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~ 164 (298)
+++++|.+|||||||+|++..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~ 22 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVS 22 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999999983
No 369
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.04 E-value=1.3e-05 Score=70.06 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=39.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~~ 212 (298)
...++|+++|.+|||||||+++++. +.......+..|++.....+..... -.+.++||||...
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~----------~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 74 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLT----------GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhh----------CCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchh
Confidence 4568999999999999999999872 1112223344444433323322221 2578999999754
No 370
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.03 E-value=9.9e-06 Score=74.04 Aligned_cols=90 Identities=19% Similarity=0.276 Sum_probs=61.2
Q ss_pred hcCCCCeEEEEEeCCCCC-----Ccc---cHHHhcc-CCCCCCcEEEEEecCCC-CChhhHHHHHHHHHc-cCCCEEE-E
Q 022351 42 RMPLVDIILEVRDARIPF-----SSE---FDQLRNH-HPFSSSRRILVLNKMDL-ASPTQFKEWITFFDQ-QNCPSFG-V 109 (298)
Q Consensus 42 ~l~~aDlVl~VvDa~~p~-----~~~---~~~l~~~-l~~~~k~~IiVlNK~DL-~~~~~~~~~~~~~~~-~~~~vi~-i 109 (298)
.|+++-++++|+|..... ... ..+|..+ ....++|.+||+||+|+ .+.+..+...+++.. .++..+. +
T Consensus 234 HIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~I 313 (369)
T COG0536 234 HIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLI 313 (369)
T ss_pred HHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceee
Confidence 355688999999986311 111 1123333 11268999999999995 455666777777653 2443333 9
Q ss_pred ecCCCcCHHHHHHHHHHHHHhh
Q 022351 110 NSHNKDNVKEFLKFLQAHVRNL 131 (298)
Q Consensus 110 Sa~~~~gi~~L~~~l~~~i~~~ 131 (298)
|+.+++|+++|+..+.+.+.+.
T Consensus 314 Sa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 314 SALTREGLDELLRALAELLEET 335 (369)
T ss_pred ehhcccCHHHHHHHHHHHHHHh
Confidence 9999999999999998887763
No 371
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=1.7e-05 Score=63.92 Aligned_cols=111 Identities=12% Similarity=0.042 Sum_probs=77.0
Q ss_pred cccCCCccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCC--CCcccHHHhccCCC---CCCcEEEEEecCCCCChhhHHH
Q 022351 20 SQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIP--FSSEFDQLRNHHPF---SSSRRILVLNKMDLASPTQFKE 94 (298)
Q Consensus 20 ~~~~~~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p--~~~~~~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~ 94 (298)
.++.-..|..|.......-++-+.++.|.||+|||..+- ++....++...+.+ .+..+++++||.|........+
T Consensus 60 KNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E 139 (182)
T KOG0072|consen 60 KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSE 139 (182)
T ss_pred ccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHH
Confidence 445557899888776667777899999999999998642 22222333333322 4577899999999864432222
Q ss_pred HH-----HHHHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 95 WI-----TFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 95 ~~-----~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.. +.++...+.++..||.+++|+++.++|+.+-+++
T Consensus 140 ~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 140 VLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred HHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhc
Confidence 22 2333445678999999999999999999876654
No 372
>PLN03110 Rab GTPase; Provisional
Probab=98.03 E-value=1.2e-05 Score=70.14 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=37.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGIL 211 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~ 211 (298)
..++|+++|.+|||||||+++|.+ ........+..|.......+.+... -.+.|+||||-.
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~----------~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~ 72 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTR----------NEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc----------CCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcH
Confidence 457999999999999999999983 1111122222333222223333221 157889999953
No 373
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.03 E-value=2e-05 Score=78.77 Aligned_cols=83 Identities=14% Similarity=0.047 Sum_probs=57.8
Q ss_pred cCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHH-HccCCCEEEEecCCCcCHHHHH
Q 022351 43 MPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFF-DQQNCPSFGVNSHNKDNVKEFL 121 (298)
Q Consensus 43 l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~-~~~~~~vi~iSa~~~~gi~~L~ 121 (298)
...+|+|+.|+|++... .+..+...+...++|+++|+||+|+.+........+.+ +..+.+++++||++++|++++.
T Consensus 70 ~~~aDvvI~VvDat~le--r~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~ 147 (591)
T TIGR00437 70 NEKPDLVVNVVDASNLE--RNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLK 147 (591)
T ss_pred hcCCCEEEEEecCCcch--hhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHH
Confidence 35799999999998632 22222222223579999999999996543322222333 2457799999999999999999
Q ss_pred HHHHHH
Q 022351 122 KFLQAH 127 (298)
Q Consensus 122 ~~l~~~ 127 (298)
+.+.+.
T Consensus 148 ~~i~~~ 153 (591)
T TIGR00437 148 DAIRKA 153 (591)
T ss_pred HHHHHH
Confidence 998764
No 374
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.02 E-value=1.4e-05 Score=69.51 Aligned_cols=56 Identities=20% Similarity=0.276 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC--CCEEEEeCCCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH--PNIYVLDTPGI 210 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~--~~~~liDTPGi 210 (298)
++|+++|.+|||||||+|.|.+ .. -.....|..+.+.. .+.+.+. -.+.|+||||-
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~-----------~~-~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~ 60 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAK-----------EG-FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQ 60 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhc-----------CC-CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCc
Confidence 3789999999999999999983 11 11222333333332 2333222 24789999995
No 375
>PRK12736 elongation factor Tu; Reviewed
Probab=98.01 E-value=1.3e-05 Score=76.26 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=46.5
Q ss_pred CCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccc--------eeecCCCCeeeeeEEEEEc-cCCCEEEEe
Q 022351 136 YDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRH--------ATVSPQPGETKDIYSLKIA-SHPNIYVLD 206 (298)
Q Consensus 136 ~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~--------~~~~~~pg~T~~~~~~~~~-~~~~~~liD 206 (298)
|...++.++++++|.+++|||||+++|++.... .|+... ...-...|+|.+.....+. ...++.++|
T Consensus 6 ~~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~----~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iD 81 (394)
T PRK12736 6 FDRSKPHVNIGTIGHVDHGKTTLTAAITKVLAE----RGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVD 81 (394)
T ss_pred hccCCCeeEEEEEccCCCcHHHHHHHHHhhhhh----hccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEE
Confidence 344567899999999999999999999853110 011110 0111256888887655543 334688999
Q ss_pred CCCC
Q 022351 207 TPGI 210 (298)
Q Consensus 207 TPGi 210 (298)
|||.
T Consensus 82 tPGh 85 (394)
T PRK12736 82 CPGH 85 (394)
T ss_pred CCCH
Confidence 9995
No 376
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.00 E-value=1.5e-05 Score=69.24 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
++|+++|.+|||||||+|.+..
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~ 24 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTE 24 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999983
No 377
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.00 E-value=1e-05 Score=66.35 Aligned_cols=20 Identities=30% Similarity=0.703 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchHHHHHHHh
Q 022351 144 TVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~ 163 (298)
+|+++|.+|||||||+|+|.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~ 20 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQ 20 (158)
T ss_pred CEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999996
No 378
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.00 E-value=1.4e-05 Score=66.61 Aligned_cols=102 Identities=20% Similarity=0.142 Sum_probs=61.1
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChhhHH--------
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPTQFK-------- 93 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~~~~-------- 93 (298)
-|..+++.+........+..+|++++|+|...+.+..+. .+...+. ..+.|+++|.||+|+.+.....
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~ 132 (175)
T cd01870 53 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQ 132 (175)
T ss_pred EEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccC
Confidence 344433333333333567899999999998754221111 1111111 2478999999999986542211
Q ss_pred ------HHHHHHHccC-CCEEEEecCCCcCHHHHHHHHHHH
Q 022351 94 ------EWITFFDQQN-CPSFGVNSHNKDNVKEFLKFLQAH 127 (298)
Q Consensus 94 ------~~~~~~~~~~-~~vi~iSa~~~~gi~~L~~~l~~~ 127 (298)
...+.....+ .+++.+||+++.|++++++++.+.
T Consensus 133 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 133 EPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred CCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHH
Confidence 1111111223 368999999999999999988643
No 379
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.00 E-value=1.2e-05 Score=67.08 Aligned_cols=53 Identities=26% Similarity=0.446 Sum_probs=34.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGI 210 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi 210 (298)
+|+++|.+|||||||+|.|.+ .......+..|.++. .+.. ....+.++||||-
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~-----------~~~~~~~~t~g~~~~--~~~~-~~~~~~i~D~~G~ 53 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQG-----------EIPKKVAPTVGFTPT--KLRL-DKYEVCIFDLGGG 53 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhC-----------CCCccccCcccceEE--EEEE-CCEEEEEEECCCc
Confidence 478999999999999999973 112223344444422 2222 2235889999995
No 380
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.99 E-value=1.3e-05 Score=67.79 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
++|+++|.+|||||||+|++..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~ 22 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQ 22 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHh
Confidence 3789999999999999999983
No 381
>PLN03127 Elongation factor Tu; Provisional
Probab=97.99 E-value=1.5e-05 Score=76.95 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=46.6
Q ss_pred CCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCcc--------ceeecCCCCeeeeeEEEEEcc-CCCEEEEeCCC
Q 022351 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLR--------HATVSPQPGETKDIYSLKIAS-HPNIYVLDTPG 209 (298)
Q Consensus 139 ~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~--------~~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPG 209 (298)
..+.++|+++|.+++|||||+|+|.+.... .|+.+ .......+|+|++.....+.. +.++.++||||
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~----~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPG 133 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAE----EGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPG 133 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHH----hhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCC
Confidence 356789999999999999999999743110 01111 011223478999887655533 34689999999
Q ss_pred CC
Q 022351 210 IL 211 (298)
Q Consensus 210 i~ 211 (298)
..
T Consensus 134 h~ 135 (447)
T PLN03127 134 HA 135 (447)
T ss_pred cc
Confidence 74
No 382
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.98 E-value=1.7e-05 Score=66.42 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~ 164 (298)
+|+++|.+|||||||+|++++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~ 22 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCK 22 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999983
No 383
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=97.98 E-value=7.2e-06 Score=66.02 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHh
Q 022351 144 TVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~ 163 (298)
+|+++|.+|||||||+|+|.
T Consensus 2 kv~liG~~~vGKSsL~~~l~ 21 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQ 21 (142)
T ss_pred eEEEECCCCCCHHHHHHHHc
Confidence 68999999999999999998
No 384
>PTZ00369 Ras-like protein; Provisional
Probab=97.98 E-value=1.4e-05 Score=67.90 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~ 163 (298)
..++|+++|.+|||||||++++.
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~ 26 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFI 26 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHh
Confidence 35799999999999999999998
No 385
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.98 E-value=1.5e-05 Score=65.54 Aligned_cols=21 Identities=43% Similarity=0.537 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHHh
Q 022351 143 VTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~ 163 (298)
++|+++|.||||||||++.+.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~ 22 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFV 22 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 386
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=7.2e-06 Score=67.98 Aligned_cols=106 Identities=19% Similarity=0.185 Sum_probs=75.8
Q ss_pred CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc-----cHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHH
Q 022351 25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE-----FDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFF 99 (298)
Q Consensus 25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~-----~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~ 99 (298)
.-|..|+...-...+..+...++.||+|+||.++..-. ...+...-...+.|+++.+||.|+.+.....+....+
T Consensus 72 ~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~ 151 (197)
T KOG0076|consen 72 SFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVF 151 (197)
T ss_pred EEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHh
Confidence 57999997666666667899999999999998742111 1112111113689999999999998765555444444
Q ss_pred H------ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 100 D------QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 100 ~------~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
. +...++.++||.+++|+++-+.++...++.
T Consensus 152 ~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~k 188 (197)
T KOG0076|consen 152 GLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEK 188 (197)
T ss_pred hhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhh
Confidence 2 233478999999999999999998877654
No 387
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.97 E-value=1.7e-05 Score=66.03 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
++++++|.+|+|||||+|++..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~ 22 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYAN 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3789999999999999999983
No 388
>PLN03108 Rab family protein; Provisional
Probab=97.97 E-value=1.7e-05 Score=68.72 Aligned_cols=61 Identities=18% Similarity=0.161 Sum_probs=36.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGIL 211 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~ 211 (298)
..++|+++|.+|||||||+|.|... .......+..|.+.....+.+... -.+.++||||..
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~----------~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~ 66 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDK----------RFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC----------CCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 3479999999999999999999831 111111122233332223333221 147799999954
No 389
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.96 E-value=1.8e-05 Score=65.34 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHh
Q 022351 144 TVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~ 163 (298)
+|+++|.+|||||||++.++
T Consensus 2 ki~vvG~~~~GKTsli~~~~ 21 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFT 21 (161)
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 68999999999999999998
No 390
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.96 E-value=4.1e-05 Score=78.60 Aligned_cols=84 Identities=18% Similarity=0.144 Sum_probs=60.4
Q ss_pred cCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHH-HccCCCEEEEecCCCcCHHHHH
Q 022351 43 MPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFF-DQQNCPSFGVNSHNKDNVKEFL 121 (298)
Q Consensus 43 l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~-~~~~~~vi~iSa~~~~gi~~L~ 121 (298)
...+|+++.|+|+.... ++..+...+.+.++|+++++||+|+..........+.+ +..+.+++++|+.+++|++++.
T Consensus 83 ~~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~ 160 (772)
T PRK09554 83 SGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALK 160 (772)
T ss_pred ccCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHH
Confidence 35899999999997632 22233223334689999999999997543333333333 2467899999999999999999
Q ss_pred HHHHHHH
Q 022351 122 KFLQAHV 128 (298)
Q Consensus 122 ~~l~~~i 128 (298)
+.+....
T Consensus 161 ~~I~~~~ 167 (772)
T PRK09554 161 LAIDRHQ 167 (772)
T ss_pred HHHHHhh
Confidence 9887654
No 391
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.96 E-value=2e-05 Score=66.13 Aligned_cols=58 Identities=16% Similarity=0.243 Sum_probs=37.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~ 212 (298)
..++|+++|.+|||||||++.+.. +.... ..|.+..+...+.. ....+.++||||...
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~-----------~~~~~--~~~t~~~~~~~~~~-~~~~l~l~D~~G~~~ 69 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKL-----------GESVT--TIPTIGFNVETVTY-KNISFTVWDVGGQDK 69 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhc-----------CCCCC--cCCccccceEEEEE-CCEEEEEEECCCChh
Confidence 357999999999999999999962 12211 23332333333322 223588999999643
No 392
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.94 E-value=1.8e-05 Score=65.94 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchHHHHHHHh
Q 022351 144 TVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~ 163 (298)
+|+++|.+|||||||+|+|.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~ 20 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLK 20 (169)
T ss_pred CEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999998
No 393
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.94 E-value=3.2e-05 Score=74.76 Aligned_cols=92 Identities=15% Similarity=0.095 Sum_probs=60.8
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-------cccHHHhccCCCCCCc-EEEEEecCCCCCh----hh--
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFS-------SEFDQLRNHHPFSSSR-RILVLNKMDLASP----TQ-- 91 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~-------~~~~~l~~~l~~~~k~-~IiVlNK~DL~~~----~~-- 91 (298)
-.-||| .++.+.+...+..+|.+|+|+|+..... ..-.+...++...+.| +|+++||+|+.+. +.
T Consensus 90 iDtPGh-~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~ 168 (447)
T PLN00043 90 IDAPGH-RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYD 168 (447)
T ss_pred EECCCH-HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHHH
Confidence 345898 7788999999999999999999987421 1111111122234664 6888999998632 11
Q ss_pred --HHHHHHHHHccC-----CCEEEEecCCCcCHH
Q 022351 92 --FKEWITFFDQQN-----CPSFGVNSHNKDNVK 118 (298)
Q Consensus 92 --~~~~~~~~~~~~-----~~vi~iSa~~~~gi~ 118 (298)
.++..+++++.+ .+++++||.+|+|+.
T Consensus 169 ~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 169 EIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 233444444444 468999999999874
No 394
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.92 E-value=1.1e-05 Score=66.59 Aligned_cols=20 Identities=40% Similarity=0.576 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchHHHHHHHh
Q 022351 144 TVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~ 163 (298)
+|+++|.+|||||||+++++
T Consensus 1 ki~vvG~~~~GKtsli~~~~ 20 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFL 20 (165)
T ss_pred CEEEECCCCCcHHHHHHHHH
Confidence 37899999999999999997
No 395
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.92 E-value=1.3e-05 Score=80.90 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
+..++|+++|.+|+|||||+|+|+.
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~ 46 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLY 46 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHH
Confidence 4568999999999999999999984
No 396
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.91 E-value=2.3e-05 Score=64.72 Aligned_cols=55 Identities=16% Similarity=0.251 Sum_probs=34.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGIL 211 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~ 211 (298)
++|+++|.+|||||||++++.. +.... ..|.+..+...+.. ..-.+.++||||..
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~-----------~~~~~--~~pt~g~~~~~~~~-~~~~~~l~D~~G~~ 55 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKL-----------GEIVT--TIPTIGFNVETVEY-KNISFTVWDVGGQD 55 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCcc--cCCCCCcceEEEEE-CCEEEEEEECCCCH
Confidence 3789999999999999999962 11111 22322222222222 22358899999974
No 397
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.91 E-value=1.5e-05 Score=67.86 Aligned_cols=20 Identities=40% Similarity=0.546 Sum_probs=18.7
Q ss_pred EEEEEcCCCCchHHHHHHHh
Q 022351 144 TVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~ 163 (298)
+|+++|.+|||||||+|++.
T Consensus 1 ki~ivG~~~vGKTsli~~l~ 20 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLC 20 (190)
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999998
No 398
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.90 E-value=2.3e-05 Score=68.67 Aligned_cols=20 Identities=50% Similarity=0.835 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHh
Q 022351 144 TVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~ 163 (298)
+|+++|.+|||||||+|.+.
T Consensus 2 KI~lvG~~gvGKTsLi~~~~ 21 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFT 21 (221)
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 78999999999999999997
No 399
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.90 E-value=1.4e-05 Score=81.14 Aligned_cols=60 Identities=25% Similarity=0.382 Sum_probs=41.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE--c---cCCCEEEEeCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI--A---SHPNIYVLDTPGIL 211 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~--~---~~~~~~liDTPGi~ 211 (298)
.+...|+++|.+|+|||||+|+|+.. ....+..+|.|.++..+.+ . ....+.++||||..
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~------------~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe 306 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKT------------QIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE 306 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhc------------cCccccCCccccccceEEEEEEecCCceEEEEEECCcHH
Confidence 45679999999999999999999831 1122344667766543322 1 23468999999963
No 400
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.90 E-value=2e-05 Score=65.53 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=18.3
Q ss_pred EEEEcCCCCchHHHHHHHhh
Q 022351 145 VMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 145 i~vvG~~nvGKSsliN~L~~ 164 (298)
|+++|.+|||||||+|++..
T Consensus 1 i~i~G~~~vGKTsli~~~~~ 20 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTT 20 (174)
T ss_pred CEEECCCCCCHHHHHHHHHh
Confidence 57999999999999999983
No 401
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.90 E-value=2e-05 Score=80.73 Aligned_cols=61 Identities=23% Similarity=0.365 Sum_probs=43.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~ 212 (298)
.+...|+++|.+|+|||||+|+|+. .. ...+..+|.|.++..+.+. .+..+.++||||...
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~-----------~~-v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~ 349 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRK-----------TN-VAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEA 349 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh-----------CC-ccccccCceeeeccEEEEEECCEEEEEEECCCCcc
Confidence 4567899999999999999999973 11 1233456778777644432 234689999999754
No 402
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.89 E-value=1.5e-05 Score=64.85 Aligned_cols=21 Identities=38% Similarity=0.669 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~ 164 (298)
+|++||.+++|||||+++|.+
T Consensus 3 rimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcC
Confidence 799999999999999999983
No 403
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.89 E-value=3.2e-05 Score=68.51 Aligned_cols=59 Identities=17% Similarity=0.101 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCC
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLAS 88 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~ 88 (298)
||| ..+...+...+..+|.+++|+|+..+.......+...+...++|+++++||+|+..
T Consensus 72 PG~-~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~ 130 (237)
T cd04168 72 PGH-MDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAG 130 (237)
T ss_pred CCc-cchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence 677 45667777888999999999999987655444444444346899999999999974
No 404
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=3.2e-05 Score=62.49 Aligned_cols=105 Identities=16% Similarity=0.065 Sum_probs=77.7
Q ss_pred CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC---CCCCcEEEEEecCCCCChhhH--HHHHH
Q 022351 25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP---FSSSRRILVLNKMDLASPTQF--KEWIT 97 (298)
Q Consensus 25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~--~~~~~ 97 (298)
-.|...+|++.....-.++..++-+|++.|..... +.+ +.+...++ ..+.|+|+|.||||+-++..+ +.-..
T Consensus 73 QiwDTagqEryrtiTTayyRgamgfiLmyDitNee-Sf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~ 151 (193)
T KOG0093|consen 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE-SFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQ 151 (193)
T ss_pred EEEecccchhhhHHHHHHhhccceEEEEEecCCHH-HHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHH
Confidence 47999999998777888999999999999987532 211 12222222 257999999999999765322 33334
Q ss_pred HHHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 98 FFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 98 ~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
...++|++++..||+.+.+++.+.+.+...+.+
T Consensus 152 l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 152 LADQLGFEFFETSAKENINVKQVFERLVDIICD 184 (193)
T ss_pred HHHHhChHHhhhcccccccHHHHHHHHHHHHHH
Confidence 445678899999999999999999888777654
No 405
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.87 E-value=3.2e-05 Score=69.83 Aligned_cols=95 Identities=19% Similarity=0.174 Sum_probs=65.9
Q ss_pred HHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCC-CCCcEEEEEecCCCCChhh-----------------HHHHH
Q 022351 35 ATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPF-SSSRRILVLNKMDLASPTQ-----------------FKEWI 96 (298)
Q Consensus 35 ~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~-~~k~~IiVlNK~DL~~~~~-----------------~~~~~ 96 (298)
..+..+..+..||+|+.|+|+.++-....+.+...+.. ...|-++|+||+|...... ..+|.
T Consensus 145 ~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 145 VLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred hhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 34567788999999999999987555555533322211 5689999999999764421 11333
Q ss_pred HHHHcc----------CC----CEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 97 TFFDQQ----------NC----PSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 97 ~~~~~~----------~~----~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
+.+... |+ .+|++||++|+|+++|.++|....+
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 333211 12 4899999999999999999987654
No 406
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.87 E-value=3e-05 Score=68.77 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~ 164 (298)
+|+++|.+|+|||||+|+|+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~ 21 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLY 21 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999985
No 407
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.87 E-value=2.3e-05 Score=78.00 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
..|+++|.+|+|||||+|+|++
T Consensus 5 piV~IiG~~d~GKTSLln~l~~ 26 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRG 26 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999984
No 408
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.87 E-value=2.1e-05 Score=70.91 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~ 164 (298)
+|+++|.+|+|||||+|+|+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~ 21 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLY 21 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999974
No 409
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.85 E-value=3.1e-05 Score=60.31 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~ 164 (298)
+|+|+|.+||||||||++|.+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~ 21 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCG 21 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHhc
Confidence 589999999999999999994
No 410
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.85 E-value=2.7e-05 Score=66.10 Aligned_cols=90 Identities=13% Similarity=0.008 Sum_probs=57.6
Q ss_pred HhcCCCCeEEEEEeCCCCCCccc--HHHhccC--CCCCCcEEEEEecCCCCChh------------hHHHHHHHHHccCC
Q 022351 41 DRMPLVDIILEVRDARIPFSSEF--DQLRNHH--PFSSSRRILVLNKMDLASPT------------QFKEWITFFDQQNC 104 (298)
Q Consensus 41 ~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l--~~~~k~~IiVlNK~DL~~~~------------~~~~~~~~~~~~~~ 104 (298)
..+..+|.+++|.|...+.+... ..+...+ ...+.|+++|.||+|+.+.. ..+......+..+.
T Consensus 68 ~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (187)
T cd04129 68 LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGA 147 (187)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCC
Confidence 35789999999999875432211 1121111 12468999999999985421 01111122223443
Q ss_pred -CEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 105 -PSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 105 -~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+++.+||+++.|++++++.+.+.+..
T Consensus 148 ~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 148 KKYMECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred cEEEEccCCCCCCHHHHHHHHHHHHhc
Confidence 68999999999999999999876544
No 411
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.84 E-value=3.8e-05 Score=73.11 Aligned_cols=69 Identities=17% Similarity=0.242 Sum_probs=45.2
Q ss_pred CCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccc--------eeecCCCCeeeeeEEEEEcc-CCCEEEEeCCC
Q 022351 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRH--------ATVSPQPGETKDIYSLKIAS-HPNIYVLDTPG 209 (298)
Q Consensus 139 ~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~--------~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPG 209 (298)
.++.++++++|.+++|||||+++|++.-. . .|+.+. .......|+|.+...+.+.. ..++.++||||
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~--~--~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpG 84 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLA--K--EGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPG 84 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHH--H--hhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCc
Confidence 46678999999999999999999974210 0 011100 01112368888877655533 33588999999
Q ss_pred CC
Q 022351 210 IL 211 (298)
Q Consensus 210 i~ 211 (298)
..
T Consensus 85 h~ 86 (394)
T TIGR00485 85 HA 86 (394)
T ss_pred hH
Confidence 64
No 412
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=0.00016 Score=66.34 Aligned_cols=103 Identities=17% Similarity=0.236 Sum_probs=71.1
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHH--------
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITF-------- 98 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~-------- 98 (298)
.-||| +.-++.+.....-.|+.+.|+|+..+......+-.-+-...-++.++|+||+|++++......++.
T Consensus 76 DCPGH-asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~Kt 154 (522)
T KOG0461|consen 76 DCPGH-ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKT 154 (522)
T ss_pred eCCCc-HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHH
Confidence 34888 677888888888889999999998765544433111111245788999999999987543322222
Q ss_pred HHcc----CCCEEEEecCCC----cCHHHHHHHHHHHHHh
Q 022351 99 FDQQ----NCPSFGVNSHNK----DNVKEFLKFLQAHVRN 130 (298)
Q Consensus 99 ~~~~----~~~vi~iSa~~~----~gi~~L~~~l~~~i~~ 130 (298)
++.. +.+++.+|+..| +++.+|.+.+.+.+-+
T Consensus 155 Le~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 155 LESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred HHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 2222 248999999999 7888888888877655
No 413
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.83 E-value=3.3e-05 Score=64.27 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~ 164 (298)
+|+++|.+|||||||++.+..
T Consensus 3 ki~iiG~~~~GKTsl~~~~~~ 23 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSK 23 (175)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999999983
No 414
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.83 E-value=8.1e-05 Score=61.26 Aligned_cols=106 Identities=10% Similarity=0.103 Sum_probs=74.5
Q ss_pred CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC---CCCCcEEEEEecCCCCCh---hhHHHHH
Q 022351 25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP---FSSSRRILVLNKMDLASP---TQFKEWI 96 (298)
Q Consensus 25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~---~~~k~~IiVlNK~DL~~~---~~~~~~~ 96 (298)
.-|..|.......-+..+.+.+|.+|+|+|..++..-.+ .++...+. ..+.|++++.||.|+.+. +.+....
T Consensus 63 ~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~ 142 (185)
T KOG0073|consen 63 NIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKAL 142 (185)
T ss_pred EEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhh
Confidence 578999987777778889999999999999987643222 22333322 267999999999999743 2332211
Q ss_pred ---HHHHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 97 ---TFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 97 ---~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+.++...++++.+|+.+|+++.+=++++...+.+
T Consensus 143 ~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 143 DLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred CHHHhccccCceEEEEeccccccHHHHHHHHHHHHHH
Confidence 1223445688999999999888878887765543
No 415
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.83 E-value=4.4e-05 Score=65.96 Aligned_cols=56 Identities=23% Similarity=0.341 Sum_probs=34.6
Q ss_pred EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc---cCCCEEEEeCCCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA---SHPNIYVLDTPGILP 212 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~---~~~~~~liDTPGi~~ 212 (298)
+|+++|.+|||||||++.|.. ++...+ .+.++.....+... ....+.|+||||-..
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~-----------~~~~~t--~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~ 60 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTT-----------GKYRST--VTSIEPNVATFILNSEGKGKKFRLVDVPGHPK 60 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhc-----------CCCCCc--cCcEeecceEEEeecCCCCceEEEEECCCCHH
Confidence 589999999999999999983 111111 12222222222221 234588999999654
No 416
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.82 E-value=5e-05 Score=64.28 Aligned_cols=56 Identities=18% Similarity=0.322 Sum_probs=35.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGI 210 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi 210 (298)
..++|+++|.+|||||||++.+.. +......+..|. +...+.. ..-.+.++||||-
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~-----------~~~~~~~pt~g~--~~~~~~~-~~~~~~i~D~~Gq 71 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKL-----------GEIVTTIPTIGF--NVETVEY-KNISFTVWDVGGQ 71 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHcc-----------CCCccccCCcce--eEEEEEE-CCEEEEEEECCCC
Confidence 457999999999999999999972 122222232332 2222222 2235889999994
No 417
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.80 E-value=4.4e-05 Score=70.12 Aligned_cols=89 Identities=20% Similarity=0.193 Sum_probs=63.4
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc---HHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHH-
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF---DQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFF- 99 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~---~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~- 99 (298)
-.-||| +...+.|.--...||+.|.++|||.+...+. ..+..++ .-+.+++.+||+||++.. ..+++...|
T Consensus 91 ADTPGH-eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL--GIrhvvvAVNKmDLvdy~e~~F~~I~~dy~ 167 (431)
T COG2895 91 ADTPGH-EQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL--GIRHVVVAVNKMDLVDYSEEVFEAIVADYL 167 (431)
T ss_pred ecCCcH-HHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh--CCcEEEEEEeeecccccCHHHHHHHHHHHH
Confidence 444999 7788888888999999999999998765443 3455542 456788899999999643 333333333
Q ss_pred ---HccCC---CEEEEecCCCcCH
Q 022351 100 ---DQQNC---PSFGVNSHNKDNV 117 (298)
Q Consensus 100 ---~~~~~---~vi~iSa~~~~gi 117 (298)
.+.+. .++++||..|.++
T Consensus 168 ~fa~~L~~~~~~~IPiSAl~GDNV 191 (431)
T COG2895 168 AFAAQLGLKDVRFIPISALLGDNV 191 (431)
T ss_pred HHHHHcCCCcceEEechhccCCcc
Confidence 34444 5799999988664
No 418
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=97.80 E-value=3.8e-05 Score=69.78 Aligned_cols=61 Identities=23% Similarity=0.287 Sum_probs=39.5
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccCCCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~~~~~liDTPGi~~ 212 (298)
.+...|++||++|+|||||||+|....... -..-+-|.++. ..+...+..+.+.||-||..
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p------------~drLFATLDpT~h~a~Lpsg~~vlltDTvGFis 238 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYP------------NDRLFATLDPTLHSAHLPSGNFVLLTDTVGFIS 238 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCc------------cchhheeccchhhhccCCCCcEEEEeechhhhh
Confidence 344689999999999999999998432211 11112233333 12344555688899999975
No 419
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.80 E-value=8e-05 Score=65.37 Aligned_cols=102 Identities=13% Similarity=0.126 Sum_probs=65.2
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccC--CCCCCcEEEEEecCCCCChhh----------
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHH--PFSSSRRILVLNKMDLASPTQ---------- 91 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l--~~~~k~~IiVlNK~DL~~~~~---------- 91 (298)
-|..+...+........+..+|++|+|+|...+.+..+. .+...+ ...+.|++||.||+||.....
T Consensus 53 iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~ 132 (222)
T cd04173 53 MWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRL 132 (222)
T ss_pred EEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccC
Confidence 477766565555555679999999999999876332221 121111 124789999999999964210
Q ss_pred ----HHHHHHHHHccCC-CEEEEecCCCc-CHHHHHHHHHHH
Q 022351 92 ----FKEWITFFDQQNC-PSFGVNSHNKD-NVKEFLKFLQAH 127 (298)
Q Consensus 92 ----~~~~~~~~~~~~~-~vi~iSa~~~~-gi~~L~~~l~~~ 127 (298)
.++-...-+..+. .++.+||+++. |+++++......
T Consensus 133 ~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 133 IPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred CccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 0111112223453 78999999988 499988876653
No 420
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.80 E-value=0.00014 Score=63.06 Aligned_cols=121 Identities=13% Similarity=0.138 Sum_probs=77.6
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD 100 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~ 100 (298)
-|...+..+........+..++.+++|+|.....+... ..+... ..+.|++++.||+|+.+...........+
T Consensus 62 ~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~ 139 (215)
T PTZ00132 62 VWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV--CENIPIVLVGNKVDVKDRQVKARQITFHR 139 (215)
T ss_pred EEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccCccccCCHHHHHHHH
Confidence 45544434444444566789999999999875432211 111112 24688999999999865432223333444
Q ss_pred ccCCCEEEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCC-----CchHHHH
Q 022351 101 QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPN-----VGKSALA 159 (298)
Q Consensus 101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~n-----vGKSsli 159 (298)
..+..++.+|++++.|+++++.+|.+.+.. ...+.++..|- +|-.-..
T Consensus 140 ~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~-----------~p~~~~ldEp~~~~~~~~ld~~~ 192 (215)
T PTZ00132 140 KKNLQYYDISAKSNYNFEKPFLWLARRLTN-----------DPNLVFVGAPALAPEEIQIDPEL 192 (215)
T ss_pred HcCCEEEEEeCCCCCCHHHHHHHHHHHHhh-----------cccceecCCcccCCCccccCHHH
Confidence 456778999999999999988888766543 13567778777 6665443
No 421
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.79 E-value=4.9e-05 Score=66.78 Aligned_cols=57 Identities=21% Similarity=0.356 Sum_probs=38.3
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGI 210 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi 210 (298)
.++..|+++|.||+|||||+|+|.+. .....++...|+. . +....+..+.++||||.
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~----------~~~~~~~~~~g~i-~---i~~~~~~~i~~vDtPg~ 93 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKN----------YTKQNISDIKGPI-T---VVTGKKRRLTFIECPND 93 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh----------cccCccccccccE-E---EEecCCceEEEEeCCch
Confidence 56778999999999999999999842 1222333444531 1 11123456899999985
No 422
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=3.8e-05 Score=64.34 Aligned_cols=106 Identities=12% Similarity=0.054 Sum_probs=75.9
Q ss_pred CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC--cccHHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHH
Q 022351 25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFS--SEFDQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFF 99 (298)
Q Consensus 25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~--~~~~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~ 99 (298)
..|..|...+....+..+..+.+.+|+|+|+.+... ..-.++...+.. .+.|+++..||.|+...-...+..+.+
T Consensus 64 ~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L 143 (181)
T KOG0070|consen 64 TVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKL 143 (181)
T ss_pred EEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHh
Confidence 589999998888888899999999999999986422 112234444332 478999999999986443222333322
Q ss_pred -----HccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 100 -----DQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 100 -----~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
....+.+...+|.+|+|+.+-++++.+.+..
T Consensus 144 ~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 144 GLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred hhhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence 2334467788999999999999999876643
No 423
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.78 E-value=3.7e-05 Score=78.34 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=43.2
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhh-cchhhhhcCCccceeec------CCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCC
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQI-GRITAAEKGKLRHATVS------PQPGETKDIYSLKI-ASHPNIYVLDTPGILPP 213 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~~~~~~~~~~~~------~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~ 213 (298)
-.+|+++|.+|+|||||+|+|+.. +.+..... ......+. ...|+|.+.....+ ..+.++.++||||....
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~-~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGE-VHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCcccccc-ccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 348999999999999999999742 21110000 00000111 24677877654332 23447999999999753
No 424
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.78 E-value=4.4e-05 Score=66.91 Aligned_cols=21 Identities=43% Similarity=0.594 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHHh
Q 022351 143 VTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~ 163 (298)
++|+++|.+|||||||+|.++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~ 21 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYM 21 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 378999999999999999998
No 425
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.78 E-value=7.4e-05 Score=62.36 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCchHHHHHHHh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~ 163 (298)
++.++++++|.+|||||||+|+++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~ 25 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFL 25 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHh
Confidence 356799999999999999999998
No 426
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.77 E-value=6.3e-05 Score=63.24 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHHh
Q 022351 143 VTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~ 163 (298)
++++++|.+|||||||++.+.
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~ 22 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYT 22 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 427
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.77 E-value=6.4e-05 Score=62.73 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
++++++|.+|+|||||++++..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~ 22 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTT 22 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3789999999999999999973
No 428
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.77 E-value=4.9e-05 Score=68.67 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=56.1
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh---hHHHHHHHHHccCC-
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT---QFKEWITFFDQQNC- 104 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~---~~~~~~~~~~~~~~- 104 (298)
|||. ++...+...+..+|.+++|+|+..........+...+...++|+++++||+|+...+ ..+...+.+....+
T Consensus 72 PG~~-df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~ 150 (270)
T cd01886 72 PGHV-DFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVP 150 (270)
T ss_pred CCcH-HHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceE
Confidence 7874 566778889999999999999988766655555554445689999999999997432 12333333322111
Q ss_pred CEEEEecC
Q 022351 105 PSFGVNSH 112 (298)
Q Consensus 105 ~vi~iSa~ 112 (298)
..+++|+.
T Consensus 151 ~~~Pisa~ 158 (270)
T cd01886 151 LQLPIGEE 158 (270)
T ss_pred EEeccccC
Confidence 34666664
No 429
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.77 E-value=6e-05 Score=62.35 Aligned_cols=86 Identities=16% Similarity=0.108 Sum_probs=55.2
Q ss_pred HhcCCCCeEEEEEeCCCCCCccc-H----HHhccCCCCCCcEEEEEecCCCCC--hhhH-HHHHHHH-Hcc-CCCEEEEe
Q 022351 41 DRMPLVDIILEVRDARIPFSSEF-D----QLRNHHPFSSSRRILVLNKMDLAS--PTQF-KEWITFF-DQQ-NCPSFGVN 110 (298)
Q Consensus 41 ~~l~~aDlVl~VvDa~~p~~~~~-~----~l~~~l~~~~k~~IiVlNK~DL~~--~~~~-~~~~~~~-~~~-~~~vi~iS 110 (298)
.+...+|.+++|+|..++.+-.+ . .+.......+.|+++|.||+||.. ...+ .+..+.+ ++. +..++.+|
T Consensus 61 ~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 140 (158)
T cd04103 61 QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETC 140 (158)
T ss_pred hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEe
Confidence 34578999999999987643332 1 122211114579999999999842 1111 1122222 222 46899999
Q ss_pred cCCCcCHHHHHHHHHH
Q 022351 111 SHNKDNVKEFLKFLQA 126 (298)
Q Consensus 111 a~~~~gi~~L~~~l~~ 126 (298)
|+++.|+++++..+.+
T Consensus 141 Ak~~~~i~~~f~~~~~ 156 (158)
T cd04103 141 ATYGLNVERVFQEAAQ 156 (158)
T ss_pred cCCCCCHHHHHHHHHh
Confidence 9999999999887753
No 430
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.76 E-value=3.9e-05 Score=67.03 Aligned_cols=68 Identities=24% Similarity=0.327 Sum_probs=43.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhh-cchhhhh----------cCCc--------cceeecCCCCeeeeeEEEEE-ccCCCEE
Q 022351 144 TVMLLGIPNVGKSALANSLHQI-GRITAAE----------KGKL--------RHATVSPQPGETKDIYSLKI-ASHPNIY 203 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~-~~~~~~~----------~~~~--------~~~~~~~~pg~T~~~~~~~~-~~~~~~~ 203 (298)
+|+++|.+++|||||+.+|+.. +.+.... .|.. .........|+|++.....+ ..+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4799999999999999999742 3222110 1110 01122245688988875544 3445789
Q ss_pred EEeCCCCC
Q 022351 204 VLDTPGIL 211 (298)
Q Consensus 204 liDTPGi~ 211 (298)
++||||..
T Consensus 81 liDtpG~~ 88 (219)
T cd01883 81 ILDAPGHR 88 (219)
T ss_pred EEECCChH
Confidence 99999964
No 431
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.76 E-value=5e-05 Score=63.05 Aligned_cols=20 Identities=35% Similarity=0.725 Sum_probs=18.6
Q ss_pred EEEEcCCCCchHHHHHHHhh
Q 022351 145 VMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 145 i~vvG~~nvGKSsliN~L~~ 164 (298)
|+++|.+|||||||++.+.+
T Consensus 2 i~ivG~~~vGKTsli~~~~~ 21 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSS 21 (164)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999999983
No 432
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.75 E-value=2.1e-05 Score=62.15 Aligned_cols=18 Identities=39% Similarity=0.565 Sum_probs=16.5
Q ss_pred EEcCCCCchHHHHHHHhh
Q 022351 147 LLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 147 vvG~~nvGKSsliN~L~~ 164 (298)
++|.+|+|||||+|+|.+
T Consensus 1 iiG~~~~GKStl~~~l~~ 18 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLG 18 (157)
T ss_pred CCCcCCCcHHHHHHHHHh
Confidence 589999999999999984
No 433
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.75 E-value=6.1e-05 Score=67.97 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~ 164 (298)
+|+++|.+|+|||||+|+|+.
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~ 24 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLL 24 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999984
No 434
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.75 E-value=6.2e-05 Score=63.05 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHHh
Q 022351 143 VTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~ 163 (298)
++|+++|.+|||||||++.+.
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~ 23 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFI 23 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 589999999999999999998
No 435
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.73 E-value=4.5e-05 Score=65.34 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~ 164 (298)
+|+++|.+|||||||+|+++.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~ 21 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLY 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999983
No 436
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.72 E-value=1.9e-05 Score=67.13 Aligned_cols=70 Identities=23% Similarity=0.324 Sum_probs=39.7
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhhcc-hhhhh--cCC---ccceeecCCCCeeeeeEEEEEc---cCCCEEEEeCCCCC
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQIGR-ITAAE--KGK---LRHATVSPQPGETKDIYSLKIA---SHPNIYVLDTPGIL 211 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~~~-~~~~~--~~~---~~~~~~~~~pg~T~~~~~~~~~---~~~~~~liDTPGi~ 211 (298)
..+|+++|..++|||||+++|+.... ..... .+. ..........|.|.+....... ....+.++||||..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 46899999999999999999984321 10000 000 0000111223445554443332 34469999999963
No 437
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.71 E-value=8.7e-05 Score=60.83 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~ 164 (298)
+|+++|.++||||||++.+.+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~ 21 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLIN 21 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999984
No 438
>PRK00007 elongation factor G; Reviewed
Probab=97.71 E-value=5.3e-05 Score=77.20 Aligned_cols=71 Identities=14% Similarity=0.138 Sum_probs=42.7
Q ss_pred ceEEEEEcCCCCchHHHHHHHhh-hcchhhhh--cCCccce---eecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCC
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQ-IGRITAAE--KGKLRHA---TVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILP 212 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~-~~~~~~~~--~~~~~~~---~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~ 212 (298)
-.+|+++|.+|+|||||+|+|+. ++.+.... .++.... ..-...|+|.+.....+ +.+..+.++||||...
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 45899999999999999999974 22211000 0000000 00135677877654332 2345799999999754
No 439
>PRK12739 elongation factor G; Reviewed
Probab=97.70 E-value=0.00011 Score=75.04 Aligned_cols=62 Identities=19% Similarity=0.152 Sum_probs=49.5
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP 89 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~ 89 (298)
.-|||. ++...+...+..+|++++|+|+..+.......+..++...++|+|+++||+|+...
T Consensus 79 DTPG~~-~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 79 DTPGHV-DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred cCCCHH-HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 348885 46677889999999999999999887766666655544568999999999999753
No 440
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.69 E-value=0.00012 Score=63.51 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.0
Q ss_pred CCceEEEEEcCCCCchHHHHHHHh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~ 163 (298)
...++++++|.+|||||||+|.++
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~ 30 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHL 30 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHH
Confidence 346799999999999999998765
No 441
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.68 E-value=8.2e-05 Score=63.26 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHh
Q 022351 144 TVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~ 163 (298)
+|+++|.+|||||||++.+.
T Consensus 2 kivivG~~~vGKTsli~~~~ 21 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFT 21 (189)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 442
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.67 E-value=7e-05 Score=74.77 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=38.5
Q ss_pred EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGI 210 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi 210 (298)
.|+++|.+|+|||||+|+|.+... ........+|+|.++....+. .+..+.++||||.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~---------d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh 60 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAA---------DRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH 60 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccC---------cCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH
Confidence 689999999999999999984210 011112346778776532221 2246889999994
No 443
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.66 E-value=9.6e-05 Score=62.06 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHHh
Q 022351 143 VTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~ 163 (298)
++++++|.+|||||||+.++.
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~ 22 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYT 22 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 579999999999999999987
No 444
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.66 E-value=0.00012 Score=62.49 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~ 163 (298)
..++|+++|.+|||||||++++.
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~ 27 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQ 27 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHH
Confidence 35799999999999999999998
No 445
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.65 E-value=9.5e-05 Score=63.94 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
++|+++|.+|||||||+|+|.+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~ 27 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVG 27 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhc
Confidence 7999999999999999999983
No 446
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.64 E-value=9.7e-05 Score=71.07 Aligned_cols=71 Identities=27% Similarity=0.396 Sum_probs=44.7
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhh-cchhhh----------hcCCc--------cceeecCCCCeeeeeEEEEEc-cC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQI-GRITAA----------EKGKL--------RHATVSPQPGETKDIYSLKIA-SH 199 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~----------~~~~~--------~~~~~~~~pg~T~~~~~~~~~-~~ 199 (298)
.+.++++++|.+++|||||+++|+.. +.+... +.|+. .........|+|.+.....+. ..
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 56789999999999999999999842 222110 11100 000112345888888754443 23
Q ss_pred CCEEEEeCCCC
Q 022351 200 PNIYVLDTPGI 210 (298)
Q Consensus 200 ~~~~liDTPGi 210 (298)
..+.|+||||.
T Consensus 85 ~~i~iiDtpGh 95 (426)
T TIGR00483 85 YEVTIVDCPGH 95 (426)
T ss_pred eEEEEEECCCH
Confidence 36889999994
No 447
>PLN03126 Elongation factor Tu; Provisional
Probab=97.62 E-value=0.00011 Score=71.53 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=43.9
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhh-cchhhhhcCCc---cceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQI-GRITAAEKGKL---RHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGI 210 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~~~~~~---~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi 210 (298)
.+.++++++|.+++|||||+|+|+.. +.+......+. .........|.|.+.....+ ..+..+.++||||.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh 154 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 154 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH
Confidence 56789999999999999999999842 11110000000 00112234577877654333 23446899999995
No 448
>PRK12739 elongation factor G; Reviewed
Probab=97.62 E-value=7.5e-05 Score=76.10 Aligned_cols=72 Identities=15% Similarity=0.178 Sum_probs=43.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh-hcchhhhh--cCCcc---ceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ-IGRITAAE--KGKLR---HATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILP 212 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~-~~~~~~~~--~~~~~---~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~ 212 (298)
...+|+++|.+|+|||||+|+|+. ++.+.... .++.. ....-...|+|.+.....+ ..+.++.++||||...
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 345899999999999999999974 22211000 00000 0001135677777654333 3445789999999754
No 449
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.62 E-value=9e-05 Score=64.34 Aligned_cols=58 Identities=24% Similarity=0.252 Sum_probs=42.1
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCC
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLA 87 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~ 87 (298)
||| .++...+...+..+|.+++|+|+..+.......+...+...++|+++|+||+|++
T Consensus 79 pG~-~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 79 PGH-VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CCC-cchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 676 4566667788899999999999987655443333332222468999999999986
No 450
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.62 E-value=0.00015 Score=61.41 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
++++++|.+|||||||++.++.
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~ 22 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVE 22 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3789999999999999999983
No 451
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.62 E-value=0.00016 Score=61.15 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
++|+++|.+|||||||++.+..
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~ 23 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAK 23 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999983
No 452
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.62 E-value=0.00014 Score=62.94 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchHHHHHHHh
Q 022351 144 TVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~ 163 (298)
.|+++|.+|||||||++.+.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~ 21 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFT 21 (202)
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 68999999999999999998
No 453
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00019 Score=71.37 Aligned_cols=110 Identities=17% Similarity=0.134 Sum_probs=75.3
Q ss_pred cccCC--CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCC------Chhh
Q 022351 20 SQKKG--GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLA------SPTQ 91 (298)
Q Consensus 20 ~~~~~--~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~------~~~~ 91 (298)
|..+| +-.-||| ..+...=.+-...||+.|+|+|..+++...-.+-.++|+..+.|+||.+||+|-+ +...
T Consensus 537 ~kvPg~lvIdtpgh-EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~ 615 (1064)
T KOG1144|consen 537 LKVPGLLVIDTPGH-ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAP 615 (1064)
T ss_pred cCCCeeEEecCCCc-hhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCch
Confidence 44455 3455787 5566555566889999999999998877666555566666789999999999964 1111
Q ss_pred ------------HHHH-------HHHHHccC---------------CCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 92 ------------FKEW-------ITFFDQQN---------------CPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 92 ------------~~~~-------~~~~~~~~---------------~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
..++ +..|.+.| +.++++||.+|+|+.+|+-+|.++.+.
T Consensus 616 i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk 688 (1064)
T KOG1144|consen 616 IVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK 688 (1064)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH
Confidence 1111 11121222 146889999999999999999877654
No 454
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.61 E-value=0.00023 Score=70.24 Aligned_cols=59 Identities=19% Similarity=0.157 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCC
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLAS 88 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~ 88 (298)
||| ..+...+...+..+|.+|+|+|+..........+.......+.|+++++||+|+..
T Consensus 87 PG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 87 PGH-EDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDG 145 (526)
T ss_pred CCc-hhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccc
Confidence 787 45666777888999999999999876655444454444446899999999999864
No 455
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.61 E-value=0.00012 Score=59.94 Aligned_cols=94 Identities=24% Similarity=0.197 Sum_probs=62.2
Q ss_pred HHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHccCCCE
Q 022351 34 AATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQNCPS 106 (298)
Q Consensus 34 ~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~v 106 (298)
+........+.++|.+|+|.|..++.+-.. +.+.... ..+.|+++|.||+|+.+... .++..+..++.+.++
T Consensus 60 ~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~-~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~ 138 (162)
T PF00071_consen 60 RFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYK-PEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPY 138 (162)
T ss_dssp GGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHS-TTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccc-cccccceeeeccccccccccchhhHHHHHHHHhCCEE
Confidence 333333456899999999999876422211 1122221 13589999999999875321 233333444556789
Q ss_pred EEEecCCCcCHHHHHHHHHHHH
Q 022351 107 FGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 107 i~iSa~~~~gi~~L~~~l~~~i 128 (298)
+.+|++++.++.+++..+.+.+
T Consensus 139 ~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 139 FEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp EEEBTTTTTTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999888876554
No 456
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.60 E-value=0.00013 Score=72.80 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
++..|+++|.+|+|||||+|+|.+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~ 28 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRG 28 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 445799999999999999999974
No 457
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.60 E-value=0.00019 Score=63.01 Aligned_cols=85 Identities=20% Similarity=0.168 Sum_probs=55.0
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEE-EEEecCCCCChh-hHHHHHHH----HH
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRI-LVLNKMDLASPT-QFKEWITF----FD 100 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~I-iVlNK~DL~~~~-~~~~~~~~----~~ 100 (298)
.-||+. ..+...++.+|++++|+|+..+....+..+...+...+.|.+ +|+||+|+.+.. ..+...+. +.
T Consensus 89 DtPg~~----~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~ 164 (225)
T cd01882 89 ECPNDI----NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFW 164 (225)
T ss_pred eCCchH----HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHH
Confidence 446765 344455688999999999988776666566555444567754 599999997432 22222221 21
Q ss_pred ---ccCCCEEEEecCCCc
Q 022351 101 ---QQNCPSFGVNSHNKD 115 (298)
Q Consensus 101 ---~~~~~vi~iSa~~~~ 115 (298)
-.+.+++++||++.-
T Consensus 165 ~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 165 TEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred HhhCCCCcEEEEeeccCC
Confidence 123489999998763
No 458
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.00012 Score=61.64 Aligned_cols=104 Identities=16% Similarity=0.085 Sum_probs=73.9
Q ss_pred CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC--c---ccHHHhccCCCCCCcEEEEEecCCCCChhhH--HHHHH
Q 022351 25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFS--S---EFDQLRNHHPFSSSRRILVLNKMDLASPTQF--KEWIT 97 (298)
Q Consensus 25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~--~---~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~--~~~~~ 97 (298)
.-|..+.|+.+....+++.+.+.-+|+|.|...-.+ . +..++.... ..+.-++++.||+||.....+ ++-..
T Consensus 58 qiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGea 136 (216)
T KOG0098|consen 58 QIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEA 136 (216)
T ss_pred EEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHH
Confidence 479999999999999999999999999999864211 1 112222221 257788999999999754322 22333
Q ss_pred HHHccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 98 FFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 98 ~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
+.++.|+.++.+||++++++++.+......+-
T Consensus 137 FA~ehgLifmETSakt~~~VEEaF~nta~~Iy 168 (216)
T KOG0098|consen 137 FAREHGLIFMETSAKTAENVEEAFINTAKEIY 168 (216)
T ss_pred HHHHcCceeehhhhhhhhhHHHHHHHHHHHHH
Confidence 34467888889999999999987766655443
No 459
>PRK09866 hypothetical protein; Provisional
Probab=97.59 E-value=0.0002 Score=71.10 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
..+.++++|.+|+|||||+|+|++
T Consensus 68 ~~~~valvG~sgaGKSTLiNaL~G 91 (741)
T PRK09866 68 LEMVLAIVGTMKAGKSTTINAIVG 91 (741)
T ss_pred cceEEEEECCCCCCHHHHHHHHhC
Confidence 347999999999999999999984
No 460
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.58 E-value=0.00015 Score=70.72 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++++++|.+++|||||+++|+.
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~ 49 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLH 49 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHH
Confidence 5668999999999999999999974
No 461
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.58 E-value=0.00037 Score=61.83 Aligned_cols=78 Identities=19% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhh-hccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC
Q 022351 121 LKFLQAHVRNLR-KSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199 (298)
Q Consensus 121 ~~~l~~~i~~~~-~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~ 199 (298)
+..+.+.+.+++ .......-....++++|.+|+||||++|+|. +..........+|+.+..+.+...
T Consensus 4 ~~~l~~~i~~l~~~~G~~~~i~~p~i~vvG~~~~GKSt~l~~i~------------g~~~~~~~~g~~t~~p~~i~l~~~ 71 (240)
T smart00053 4 LIPLVNKLQDAFSALGQEKDLDLPQIAVVGGQSAGKSSVLENFV------------GRDFLPRGSGIVTRRPLILQLINS 71 (240)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCeEEEEcCCCccHHHHHHHHh------------CCCccccCCCcccccceEEEccCC
Q ss_pred -----------------------------------------------------CCEEEEeCCCC
Q 022351 200 -----------------------------------------------------PNIYVLDTPGI 210 (298)
Q Consensus 200 -----------------------------------------------------~~~~liDTPGi 210 (298)
++++||||||+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl 135 (240)
T smart00053 72 STEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGI 135 (240)
T ss_pred CCcceEEEecCCcccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCc
No 462
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.58 E-value=5.6e-05 Score=74.88 Aligned_cols=109 Identities=16% Similarity=0.063 Sum_probs=69.8
Q ss_pred eecccCCCccchhhHHHHHHHHHHhc--CCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHH
Q 022351 18 AVSQKKGGGWYGPHMAAATRAIADRM--PLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEW 95 (298)
Q Consensus 18 ~~~~~~~~~wfpghm~~~~~~i~~~l--~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~ 95 (298)
...+++|+--+..+- ...+-.++.+ .+.|+|+.|+||... .++..+--.+.+.++|.++++|++|.+....++--
T Consensus 53 ~ivDLPG~YSL~~~S-~DE~Var~~ll~~~~D~ivnVvDAtnL--eRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID 129 (653)
T COG0370 53 EIVDLPGTYSLTAYS-EDEKVARDFLLEGKPDLIVNVVDATNL--ERNLYLTLQLLELGIPMILALNMIDEAKKRGIRID 129 (653)
T ss_pred EEEeCCCcCCCCCCC-chHHHHHHHHhcCCCCEEEEEcccchH--HHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCccc
Confidence 344556653333331 1222233332 567999999999853 33333322222478999999999998766543322
Q ss_pred HHHHH-ccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 96 ITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 96 ~~~~~-~~~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
.+.++ ..|.++++++|++|+|++++++.+.+..+
T Consensus 130 ~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 130 IEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAE 164 (653)
T ss_pred HHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhcc
Confidence 23332 46899999999999999999998875443
No 463
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.56 E-value=0.00017 Score=62.35 Aligned_cols=21 Identities=38% Similarity=0.601 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHHh
Q 022351 143 VTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~ 163 (298)
++|+++|.++||||||++.+.
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~ 21 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLIC 21 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 378999999999999999998
No 464
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.56 E-value=0.0005 Score=60.75 Aligned_cols=49 Identities=18% Similarity=0.181 Sum_probs=38.6
Q ss_pred CcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351 75 SRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 75 k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
+|.++|+||+|+.+.++.+.+. ...+++++||+++.|++++.+.+.+.+
T Consensus 177 ~p~iiV~NK~Dl~~~~~~~~~~-----~~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 177 IPCLYVYNKIDLISIEELDLLA-----RQPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred eeEEEEEECccCCCHHHHHHHh-----cCCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 5889999999998776555321 234689999999999999999887654
No 465
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.55 E-value=0.00013 Score=64.06 Aligned_cols=58 Identities=21% Similarity=0.203 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCC
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLA 87 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~ 87 (298)
||| ..+...+...+..+|.+++|+|+..+.......+.......+.|+++++||+|+.
T Consensus 81 PG~-~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGH-VDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CCc-cccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 677 5677888899999999999999998766555544443333578999999999986
No 466
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.55 E-value=0.00015 Score=72.83 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=38.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE--ccCCCEEEEeCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI--ASHPNIYVLDTPGI 210 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~--~~~~~~~liDTPGi 210 (298)
.|+++|.+++|||||+|+|.++.. .+.......|.|.+.....+ .++..+.++||||.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~---------dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh 61 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNA---------DRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH 61 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---------ccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH
Confidence 579999999999999999984211 11122233567776653222 23445789999996
No 467
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.55 E-value=0.00013 Score=64.97 Aligned_cols=20 Identities=30% Similarity=0.610 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHh
Q 022351 144 TVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~ 163 (298)
+|+++|.+|||||||+|.++
T Consensus 2 KVvvlG~~gvGKTSLi~r~~ 21 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFL 21 (247)
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 68999999999999999998
No 468
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0002 Score=57.48 Aligned_cols=104 Identities=14% Similarity=0.051 Sum_probs=76.1
Q ss_pred CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC--cccHHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHH
Q 022351 25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFS--SEFDQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFF 99 (298)
Q Consensus 25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~--~~~~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~ 99 (298)
..|..|...+....++.+......+|+|+|+.+... ..-.++...+.. .+.+++|..||-|+...-..+++.+++
T Consensus 64 NvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~l 143 (180)
T KOG0071|consen 64 NVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKL 143 (180)
T ss_pred eeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHh
Confidence 589999999999999999999999999999865311 111233333322 578899999999997665556666665
Q ss_pred H-----ccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351 100 D-----QQNCPSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 100 ~-----~~~~~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
+ ...+.+.+.++.++.|+.+=+.++.+..
T Consensus 144 eLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 144 ELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred ccccccCCccEeeccccccchhHHHHHHHHHhhc
Confidence 3 2234577889999999988888876543
No 469
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.52 E-value=0.00013 Score=69.79 Aligned_cols=68 Identities=24% Similarity=0.287 Sum_probs=40.5
Q ss_pred eEEEEEcCCCCchHHHHHHHhh-hcchhhhh----------cCCc----------cceeecCCCCeeeeeEEEEE-ccCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ-IGRITAAE----------KGKL----------RHATVSPQPGETKDIYSLKI-ASHP 200 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~-~~~~~~~~----------~~~~----------~~~~~~~~pg~T~~~~~~~~-~~~~ 200 (298)
++++++|.+++|||||+++|+. ++.+.... .|.. ........-|.|.+.....+ ..+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 3789999999999999999974 22222110 1110 00001123367777664333 3344
Q ss_pred CEEEEeCCCC
Q 022351 201 NIYVLDTPGI 210 (298)
Q Consensus 201 ~~~liDTPGi 210 (298)
++.++||||.
T Consensus 81 ~~~liDtPGh 90 (406)
T TIGR02034 81 KFIVADTPGH 90 (406)
T ss_pred EEEEEeCCCH
Confidence 6899999995
No 470
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.49 E-value=0.00044 Score=68.26 Aligned_cols=60 Identities=18% Similarity=0.110 Sum_probs=45.8
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCC
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLA 87 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~ 87 (298)
.-||| ..+...+...+..+|.+|+|+|+..........+.+.+...++|+++++||+|+.
T Consensus 86 DTPG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~ 145 (527)
T TIGR00503 86 DTPGH-EDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRD 145 (527)
T ss_pred ECCCh-hhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 34788 5667778888999999999999987655444444444444679999999999985
No 471
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.49 E-value=0.00022 Score=60.45 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHHh
Q 022351 143 VTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~ 163 (298)
.+++++|.+|+|||||+|.+.
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~ 22 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFT 22 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 378999999999999999997
No 472
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.46 E-value=0.00011 Score=63.71 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~ 164 (298)
+|+++|.+|+|||||+++|+.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~ 22 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIE 22 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999984
No 473
>PRK12740 elongation factor G; Reviewed
Probab=97.46 E-value=0.00024 Score=72.26 Aligned_cols=60 Identities=20% Similarity=0.155 Sum_probs=44.3
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCC
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLAS 88 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~ 88 (298)
-|||. ++...+...+..+|++++|+|+..+.......+...+...++|+++|+||+|+..
T Consensus 67 tPG~~-~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 67 TPGHV-DFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAG 126 (668)
T ss_pred CCCcH-HHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 37884 4556677788899999999999876654444443333346799999999999863
No 474
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.00043 Score=65.02 Aligned_cols=91 Identities=21% Similarity=0.225 Sum_probs=62.1
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCC-------CCcccH---HHhccCCCCCCcEEEEEecCCCCCh--hhHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIP-------FSSEFD---QLRNHHPFSSSRRILVLNKMDLASP--TQFK 93 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p-------~~~~~~---~l~~~l~~~~k~~IiVlNK~DL~~~--~~~~ 93 (298)
-.-||| ..+.+.+..-..+||+.++|+|++.+ ...+.. .|... ..-..+|+++||+|+.+- +..+
T Consensus 90 iDaPGH-rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t--lGi~~lIVavNKMD~v~wde~rf~ 166 (428)
T COG5256 90 IDAPGH-RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART--LGIKQLIVAVNKMDLVSWDEERFE 166 (428)
T ss_pred eeCCch-HHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh--cCCceEEEEEEcccccccCHHHHH
Confidence 455997 78999999999999999999999976 222222 23333 245678999999999853 2222
Q ss_pred HHHHH---H-HccC-----CCEEEEecCCCcCHHH
Q 022351 94 EWITF---F-DQQN-----CPSFGVNSHNKDNVKE 119 (298)
Q Consensus 94 ~~~~~---~-~~~~-----~~vi~iSa~~~~gi~~ 119 (298)
+.... + +..| .+++++|+.+|.++.+
T Consensus 167 ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 167 EIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 22222 2 2334 3589999999987654
No 475
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.42 E-value=0.00011 Score=62.36 Aligned_cols=58 Identities=26% Similarity=0.339 Sum_probs=32.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPP 213 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~ 213 (298)
.++++|.+|+||++|+..|.. +....+-+|-.|..+... .......+.|||+||-...
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~---------~~~~~T~tS~e~n~~~~~---~~~~~~~~~lvD~PGH~rl 62 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVN---------GKTVPTVTSMENNIAYNV---NNSKGKKLRLVDIPGHPRL 62 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHH---------SS---B---SSEEEECCG---SSTCGTCECEEEETT-HCC
T ss_pred eEEEEcCCCCCHHHHHHHHhc---------CCcCCeeccccCCceEEe---ecCCCCEEEEEECCCcHHH
Confidence 789999999999999999983 211222222222221110 0123446999999997553
No 476
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=97.41 E-value=0.00013 Score=70.31 Aligned_cols=140 Identities=16% Similarity=0.236 Sum_probs=84.1
Q ss_pred CCcEEEEEecCCCCChhh----HHHHHHHHHccC-----CCEEEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceE
Q 022351 74 SSRRILVLNKMDLASPTQ----FKEWITFFDQQN-----CPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVT 144 (298)
Q Consensus 74 ~k~~IiVlNK~DL~~~~~----~~~~~~~~~~~~-----~~vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~ 144 (298)
....+.+.+++|...... ..-|.-...+.+ ..+...+++...|..+++...... ......
T Consensus 243 ~p~lVd~aT~~dwpgTtlsllkfpv~~p~~~r~~~r~krl~~~~~~akk~~g~r~l~~~~~~~-----------ag~~~~ 311 (572)
T KOG1249|consen 243 APKLVDRATISDWPGTTLSLLKFPVLVPHPYRLGGRRKRLGVHSVSAKKDMGERDLLALETGD-----------AGKAGP 311 (572)
T ss_pred ccceeeeeecccCCccccchhhCccccccchhhccchhhhhhhhhhhHhhhhHHHHHHhhhhc-----------cccccc
Confidence 456788899999865421 111111000000 123455677777777766654422 245567
Q ss_pred EEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEE-EccCCCEEEEeCCCCCCCC----CCChh
Q 022351 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLK-IASHPNIYVLDTPGILPPE----IHDVE 219 (298)
Q Consensus 145 i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~-~~~~~~~~liDTPGi~~~~----~~~~~ 219 (298)
++.||.++.||+++||+|-.. ..+...+...++.||||....... +. ...-.++||||+..++ +-..|
T Consensus 312 v~~vg~t~a~~e~~~~~~~~~------~~a~~~~~~e~~vPgtTLg~~ri~~i~-~~~~w~YDTPG~~~~~q~~~llt~e 384 (572)
T KOG1249|consen 312 VAAVGRTFAGSEELINAMAKE------LHADVEALAEEPVPGTTLGIRRIEGIF-KRGAWLYDTPGVLNPNQILSLLTSE 384 (572)
T ss_pred hHHhhhhhhccchhhhhhhhh------hccchhccccCCCCcccccceeeeccc-cccceeecCCCccChhhhhhhccHH
Confidence 899999999999999999631 112345566789999997766432 21 1246899999998764 23344
Q ss_pred hhhhhhhhcccc
Q 022351 220 VCSKLALTGAIG 231 (298)
Q Consensus 220 ~~~~la~~~~i~ 231 (298)
+...++....++
T Consensus 385 El~~v~p~~~lr 396 (572)
T KOG1249|consen 385 ELLNVTPRRVLR 396 (572)
T ss_pred HhhhcCcccccc
Confidence 444444444333
No 477
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.41 E-value=0.00035 Score=59.31 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
..++|+++|.++||||||++.+..
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~ 27 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAK 27 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999999983
No 478
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.40 E-value=0.00034 Score=59.07 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHHh
Q 022351 143 VTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~ 163 (298)
++++++|.++||||||++.+.
T Consensus 2 ~kivv~G~~~vGKTsli~~~~ 22 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYT 22 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHh
Confidence 479999999999999999998
No 479
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.39 E-value=0.00053 Score=61.23 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=43.7
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCC---CEEEEeCCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP---NIYVLDTPGILPP 213 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~---~~~liDTPGi~~~ 213 (298)
+-.++|+.||.+|.|||||+++|+++.- .........|++-...+.+.+..+. +++|+||.|+.+.
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f--------~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQ 108 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKF--------ESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQ 108 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhcccc--------CCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccc
Confidence 4568999999999999999999996432 1122333455554443333322111 4889999999874
No 480
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.36 E-value=0.0005 Score=62.05 Aligned_cols=61 Identities=18% Similarity=0.116 Sum_probs=44.7
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP 89 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~ 89 (298)
-||| .++...+...+..+|.+++|+|+..+.......+..+....++|+++++||+|+...
T Consensus 78 TPG~-~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 78 TPGH-EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred CCCc-hHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCC
Confidence 3676 456666777889999999999998765544444444433457999999999998654
No 481
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=97.34 E-value=0.00057 Score=56.18 Aligned_cols=56 Identities=21% Similarity=0.381 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCC-CCeeeeeEEEEEccCC-CEEEEeCCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQ-PGETKDIYSLKIASHP-NIYVLDTPG 209 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~-pg~T~~~~~~~~~~~~-~~~liDTPG 209 (298)
++|.++|.+|||||||+-+.. ....-...+. -|+--.+..+.+...+ ++.|+||.|
T Consensus 12 ~KiLlIGeSGVGKSSLllrFv-----------~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAG 69 (209)
T KOG0080|consen 12 FKILLIGESGVGKSSLLLRFV-----------SNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAG 69 (209)
T ss_pred EEEEEEccCCccHHHHHHHHH-----------hcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccc
No 482
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.34 E-value=0.00043 Score=58.97 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCchHHHHHHHh
Q 022351 142 TVTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~ 163 (298)
.++++++|.+|||||||++.+.
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~ 24 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYT 24 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999997
No 483
>PRK13351 elongation factor G; Reviewed
Probab=97.34 E-value=0.00071 Score=69.02 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP 89 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~ 89 (298)
||| .++...+...+..+|.+++|+|+..+.......+...+...++|+++++||+|+...
T Consensus 81 PG~-~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 81 PGH-IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGA 140 (687)
T ss_pred CCc-HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC
Confidence 677 456677788899999999999998776554444444333467999999999998753
No 484
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.32 E-value=0.00047 Score=57.99 Aligned_cols=57 Identities=23% Similarity=0.373 Sum_probs=38.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGI 210 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi 210 (298)
.+..+|+++|.+|+||||+++.|.. +....+.|.-|. ++..+... +..+.++|.+|=
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~-----------~~~~~~~pT~g~--~~~~i~~~-~~~~~~~d~gG~ 68 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN-----------GEISETIPTIGF--NIEEIKYK-GYSLTIWDLGGQ 68 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS-----------SSEEEEEEESSE--EEEEEEET-TEEEEEEEESSS
T ss_pred CcEEEEEEECCCccchHHHHHHhhh-----------ccccccCccccc--ccceeeeC-cEEEEEEecccc
Confidence 5678999999999999999999972 222333332232 22333332 335889999994
No 485
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.32 E-value=0.002 Score=55.19 Aligned_cols=86 Identities=14% Similarity=0.145 Sum_probs=57.8
Q ss_pred cCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhh---------HHHHHH----HH----HccC--
Q 022351 43 MPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ---------FKEWIT----FF----DQQN-- 103 (298)
Q Consensus 43 l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~---------~~~~~~----~~----~~~~-- 103 (298)
+..+|++++|.|. +++..+..+.+.+...++|+++|+||+|+..+.. .+..++ .+ ...+
T Consensus 78 ~~~~d~~l~v~~~--~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~ 155 (197)
T cd04104 78 FSEYDFFIIISST--RFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVS 155 (197)
T ss_pred ccCcCEEEEEeCC--CCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCC
Confidence 6789999998654 3455555555554446789999999999964211 112222 22 1112
Q ss_pred -CCEEEEecC--CCcCHHHHHHHHHHHHHh
Q 022351 104 -CPSFGVNSH--NKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 104 -~~vi~iSa~--~~~gi~~L~~~l~~~i~~ 130 (298)
.+++.+|+. .+.++..|.+.+...+++
T Consensus 156 ~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 156 EPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 268899998 568999999999887775
No 486
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.32 E-value=0.0002 Score=59.33 Aligned_cols=20 Identities=40% Similarity=0.483 Sum_probs=18.9
Q ss_pred EEEEcCCCCchHHHHHHHhh
Q 022351 145 VMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 145 i~vvG~~nvGKSsliN~L~~ 164 (298)
|+|+|..++|||||||+|++
T Consensus 1 V~v~G~~ssGKSTliNaLlG 20 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLG 20 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEcCCCCCHHHHHHHHHh
Confidence 68999999999999999995
No 487
>PRK00007 elongation factor G; Reviewed
Probab=97.32 E-value=0.00043 Score=70.65 Aligned_cols=61 Identities=20% Similarity=0.168 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT 90 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~ 90 (298)
|||. .+...+...+..+|++++|+|+..+.......+..++...++|+++++||+|+....
T Consensus 83 PG~~-~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 83 PGHV-DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred CCcH-HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 8885 466678888999999999999998877776666665555789999999999998643
No 488
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.32 E-value=0.00048 Score=60.45 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.+|+++|.+|||||||++.+..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~ 23 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAK 23 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999983
No 489
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.29 E-value=0.00054 Score=60.14 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~ 164 (298)
+|+++|..+.|||||+++|+.
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~ 22 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLA 22 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999984
No 490
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.28 E-value=0.0012 Score=57.19 Aligned_cols=54 Identities=19% Similarity=0.317 Sum_probs=39.9
Q ss_pred CCcEEEEEecCCCCCh--hhHHHHHHHHHc--cCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351 74 SSRRILVLNKMDLASP--TQFKEWITFFDQ--QNCPSFGVNSHNKDNVKEFLKFLQAH 127 (298)
Q Consensus 74 ~k~~IiVlNK~DL~~~--~~~~~~~~~~~~--~~~~vi~iSa~~~~gi~~L~~~l~~~ 127 (298)
.++.++++||+|+.+. .......+.+++ ...+++.+||+++.|++++++++.++
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4577999999999753 223344444433 23689999999999999999998754
No 491
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.28 E-value=0.00055 Score=60.48 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~ 163 (298)
..++|+++|.+|||||||++.+.
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~ 34 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLA 34 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHh
Confidence 45799999999999999999997
No 492
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=97.22 E-value=0.0005 Score=59.28 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHHhhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
++|+++|..++|||||+.+|.++
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~ 23 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV 23 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999754
No 493
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.22 E-value=0.0014 Score=58.52 Aligned_cols=84 Identities=21% Similarity=0.284 Sum_probs=52.6
Q ss_pred CeEEEEEeCCC---CCCcccHHH--hccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHcc-------------------
Q 022351 47 DIILEVRDARI---PFSSEFDQL--RNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQ------------------- 102 (298)
Q Consensus 47 DlVl~VvDa~~---p~~~~~~~l--~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~------------------- 102 (298)
-+|++|+|.-. |.+.....+ ..++-....|.|+|+||+|+.+.+-..+|+..|+..
T Consensus 149 tvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~Sm 228 (366)
T KOG1532|consen 149 TVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSM 228 (366)
T ss_pred eEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhH
Confidence 47889998632 211111112 122223678999999999999887777777655311
Q ss_pred ---------CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 103 ---------NCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 103 ---------~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
++.++.+|+.+|.|.++++..+.+.+.+
T Consensus 229 SL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 229 SLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred HHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 1245667777777777777766665554
No 494
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.20 E-value=0.00079 Score=65.17 Aligned_cols=71 Identities=24% Similarity=0.314 Sum_probs=43.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh-hcchhhhh----------cCCcc--c------eeecCCCCeeeeeEEEEEc-cC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ-IGRITAAE----------KGKLR--H------ATVSPQPGETKDIYSLKIA-SH 199 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~-~~~~~~~~----------~~~~~--~------~~~~~~pg~T~~~~~~~~~-~~ 199 (298)
.+.++++++|..++|||||+.+|+. .+.+.... .+++. . .......|+|.++....+. .+
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 5668999999999999999999974 22221100 01000 0 0111234778777655443 33
Q ss_pred CCEEEEeCCCC
Q 022351 200 PNIYVLDTPGI 210 (298)
Q Consensus 200 ~~~~liDTPGi 210 (298)
..+.|+||||.
T Consensus 85 ~~i~lIDtPGh 95 (446)
T PTZ00141 85 YYFTIIDAPGH 95 (446)
T ss_pred eEEEEEECCCh
Confidence 46889999995
No 495
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.20 E-value=0.0018 Score=55.93 Aligned_cols=103 Identities=16% Similarity=0.073 Sum_probs=61.9
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhcc------------------CCCCCCcEEEEEe
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNH------------------HPFSSSRRILVLN 82 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~------------------l~~~~k~~IiVlN 82 (298)
-|..+...+........+..+|.+|+|+|...+.+..+ .++... ....+.|+++|.|
T Consensus 58 IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGn 137 (202)
T cd04102 58 LWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGT 137 (202)
T ss_pred EEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEE
Confidence 47776666666555678999999999999987643322 112111 0013579999999
Q ss_pred cCCCCChhhHH------HHHHHHHccCCCEEEEecCCCc-------CHHHHHHHHHHHH
Q 022351 83 KMDLASPTQFK------EWITFFDQQNCPSFGVNSHNKD-------NVKEFLKFLQAHV 128 (298)
Q Consensus 83 K~DL~~~~~~~------~~~~~~~~~~~~vi~iSa~~~~-------gi~~L~~~l~~~i 128 (298)
|+||.+..... .....-++.+.+.+.++|.... +..+|..++...+
T Consensus 138 K~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 196 (202)
T cd04102 138 KLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVI 196 (202)
T ss_pred CccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCcccccCCCccHHHHHHHHHHHH
Confidence 99997542111 1111122467788888887542 3445555554444
No 496
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.19 E-value=0.0006 Score=68.30 Aligned_cols=66 Identities=24% Similarity=0.335 Sum_probs=40.3
Q ss_pred EEEEEcCCCCchHHHHHHHhhh-cchhhhhcCCccceeec------CCCCeeeeeEEEEE--c--cC--CCEEEEeCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQI-GRITAAEKGKLRHATVS------PQPGETKDIYSLKI--A--SH--PNIYVLDTPGI 210 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~-~~~~~~~~~~~~~~~~~------~~pg~T~~~~~~~~--~--~~--~~~~liDTPGi 210 (298)
+++++|.+++|||||+++|+.. +.++..+ ...+.. ...|.|.....+.+ . ++ ..+.|+||||.
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~----~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~ 80 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISERE----MREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 80 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCcccc----ccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCc
Confidence 7999999999999999999852 2222110 011111 23466766543322 1 11 24789999998
Q ss_pred CCC
Q 022351 211 LPP 213 (298)
Q Consensus 211 ~~~ 213 (298)
...
T Consensus 81 ~dF 83 (595)
T TIGR01393 81 VDF 83 (595)
T ss_pred HHH
Confidence 653
No 497
>PLN00023 GTP-binding protein; Provisional
Probab=97.18 E-value=0.00096 Score=61.60 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
..++|+++|.+|||||||++.+..
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~ 43 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVK 43 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhc
Confidence 457999999999999999999983
No 498
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.18 E-value=0.0015 Score=58.70 Aligned_cols=60 Identities=20% Similarity=0.142 Sum_probs=44.7
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP 89 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~ 89 (298)
||| ..+...+...+..+|.+++|+|+..+.......+...+...++|.++++||+|+...
T Consensus 72 PG~-~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 72 PGY-ADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA 131 (268)
T ss_pred cCH-HHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC
Confidence 777 455667778889999999999998765544343433333467999999999998754
No 499
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.18 E-value=0.00059 Score=69.65 Aligned_cols=61 Identities=20% Similarity=0.166 Sum_probs=46.9
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP 89 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~ 89 (298)
-|||. ++...+...+..+|++++|+|+..+.......+..++...++|+++++||+|+...
T Consensus 82 TPG~~-~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 82 TPGHV-DFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred CCCCc-chhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 37774 45556778899999999999999876665555555444567999999999999754
No 500
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.0011 Score=63.58 Aligned_cols=126 Identities=25% Similarity=0.165 Sum_probs=81.2
Q ss_pred chhHHHHHhhhcceecccCCCc----------------------cch----hhHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 022351 5 SSSLFKLAREIGTAVSQKKGGG----------------------WYG----PHMAAATRAIADRMPLVDIILEVRDARIP 58 (298)
Q Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~----------------------wfp----ghm~~~~~~i~~~l~~aDlVl~VvDa~~p 58 (298)
||-|-.|.++--.++-..+|++ |-. +--.-.+++.++.+.++|+|++|+|+...
T Consensus 282 SSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~ 361 (531)
T KOG1191|consen 282 SSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEES 361 (531)
T ss_pred HHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEeccccc
Confidence 6677788888777777776621 111 11133567788899999999999999655
Q ss_pred CCcccHHHhccCCC------------CCCcEEEEEecCCCCChhhHHHH--HHHHHcc---CCCE-EEEecCCCcCHHHH
Q 022351 59 FSSEFDQLRNHHPF------------SSSRRILVLNKMDLASPTQFKEW--ITFFDQQ---NCPS-FGVNSHNKDNVKEF 120 (298)
Q Consensus 59 ~~~~~~~l~~~l~~------------~~k~~IiVlNK~DL~~~~~~~~~--~~~~~~~---~~~v-i~iSa~~~~gi~~L 120 (298)
.++.+..+.+.+.. ...+.+++.||+|+.++-....| +.+.... .+++ ..+||.+++|++.|
T Consensus 362 ~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L 441 (531)
T KOG1191|consen 362 DTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERL 441 (531)
T ss_pred ccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccceEEEeeechhhhHHHH
Confidence 45544443332211 23789999999999876211111 1222111 2344 45999999999999
Q ss_pred HHHHHHHHHh
Q 022351 121 LKFLQAHVRN 130 (298)
Q Consensus 121 ~~~l~~~i~~ 130 (298)
...+-+.+..
T Consensus 442 ~~all~~~~~ 451 (531)
T KOG1191|consen 442 STALLNIVER 451 (531)
T ss_pred HHHHHHHHHH
Confidence 9998877654
Done!