Query 022351
Match_columns 298
No_of_seqs 364 out of 3242
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 04:05:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022351.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022351hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1puj_A YLQF, conserved hypothe 100.0 9.6E-40 3.3E-44 295.1 21.6 234 25-273 3-240 (282)
2 3cnl_A YLQF, putative uncharac 100.0 6.3E-36 2.2E-40 267.4 5.3 185 26-251 2-187 (262)
3 3ec1_A YQEH GTPase; atnos1, at 99.9 5.1E-24 1.7E-28 199.1 13.1 160 33-214 59-226 (369)
4 3h2y_A GTPase family protein; 99.9 8.4E-24 2.9E-28 197.5 12.5 160 33-214 57-225 (368)
5 1t9h_A YLOQ, probable GTPase E 99.9 1.2E-23 4E-28 191.4 2.2 145 41-216 82-240 (307)
6 1mky_A Probable GTP-binding pr 99.9 1.5E-21 5.1E-26 186.3 13.9 167 34-212 70-240 (439)
7 2hjg_A GTP-binding protein ENG 99.9 4.6E-22 1.6E-26 189.7 7.3 165 34-214 71-237 (436)
8 2yv5_A YJEQ protein; hydrolase 99.8 6E-21 2E-25 173.7 7.8 150 41-215 75-231 (302)
9 4dcu_A GTP-binding protein ENG 99.8 7.9E-21 2.7E-25 182.1 9.0 166 32-214 89-257 (456)
10 2rcn_A Probable GTPase ENGC; Y 99.8 2.2E-20 7.5E-25 173.0 7.7 171 16-216 103-284 (358)
11 1u0l_A Probable GTPase ENGC; p 99.8 1.5E-19 5.1E-24 164.3 8.1 152 39-215 78-236 (301)
12 2e87_A Hypothetical protein PH 99.3 9E-14 3.1E-18 128.9 -3.5 155 50-216 62-230 (357)
13 4a9a_A Ribosome-interacting GT 99.3 2.6E-13 8.8E-18 126.4 -0.9 60 142-213 72-132 (376)
14 1x3s_A RAS-related protein RAB 99.0 4.5E-11 1.6E-15 99.6 2.2 117 29-157 72-194 (195)
15 1wf3_A GTP-binding protein; GT 99.0 3.3E-10 1.1E-14 102.6 6.9 62 142-214 7-69 (301)
16 3iev_A GTP-binding protein ERA 99.0 3.3E-10 1.1E-14 102.8 6.8 65 139-214 7-73 (308)
17 3lxw_A GTPase IMAP family memb 99.0 4.7E-10 1.6E-14 98.5 6.3 64 140-214 19-84 (247)
18 4dhe_A Probable GTP-binding pr 99.0 1.1E-09 3.7E-14 93.6 7.5 68 140-217 27-96 (223)
19 3i8s_A Ferrous iron transport 98.9 1.2E-09 3.9E-14 97.6 7.5 61 142-214 3-64 (274)
20 3iby_A Ferrous iron transport 98.9 9.5E-10 3.2E-14 97.2 6.6 59 144-214 3-62 (256)
21 3lxx_A GTPase IMAP family memb 98.9 1.4E-09 4.7E-14 94.6 7.3 67 140-218 27-96 (239)
22 1svi_A GTP-binding protein YSX 98.9 1.9E-09 6.5E-14 89.9 7.7 65 140-216 21-85 (195)
23 1h65_A Chloroplast outer envel 98.9 2.7E-09 9.2E-14 94.7 8.7 65 140-215 37-102 (270)
24 2gj8_A MNME, tRNA modification 98.9 1.6E-09 5.5E-14 89.4 6.7 61 141-213 3-65 (172)
25 1mky_A Probable GTP-binding pr 98.9 7.1E-10 2.4E-14 105.4 5.1 58 144-212 3-61 (439)
26 3def_A T7I23.11 protein; chlor 98.9 1.2E-09 4.1E-14 96.6 5.8 65 140-215 34-99 (262)
27 3b1v_A Ferrous iron uptake tra 98.9 2.2E-09 7.5E-14 95.8 7.4 61 142-214 3-63 (272)
28 3a1s_A Iron(II) transport prot 98.9 3.1E-09 1.1E-13 94.0 8.0 63 141-215 4-67 (258)
29 3gee_A MNME, tRNA modification 98.9 8.6E-10 2.9E-14 105.9 4.3 62 141-214 232-295 (476)
30 3pqc_A Probable GTP-binding pr 98.9 5.8E-09 2E-13 86.6 8.7 64 140-216 21-84 (195)
31 1ega_A Protein (GTP-binding pr 98.9 2E-09 6.8E-14 97.4 5.7 60 141-211 7-67 (301)
32 3t5g_A GTP-binding protein RHE 98.8 2.7E-10 9.3E-15 94.0 -0.2 103 39-157 71-180 (181)
33 4dhe_A Probable GTP-binding pr 98.8 1.4E-08 4.8E-13 86.6 10.5 93 38-130 108-211 (223)
34 1xzp_A Probable tRNA modificat 98.8 9.4E-10 3.2E-14 105.8 3.2 61 141-213 242-305 (482)
35 2cxx_A Probable GTP-binding pr 98.8 4.9E-09 1.7E-13 86.8 6.8 60 143-217 2-61 (190)
36 2aka_B Dynamin-1; fusion prote 98.8 6.9E-09 2.4E-13 92.8 8.0 25 140-164 24-48 (299)
37 3k53_A Ferrous iron transport 98.8 7.5E-09 2.6E-13 91.9 8.1 62 142-215 3-65 (271)
38 1upt_A ARL1, ADP-ribosylation 98.8 2.7E-09 9.2E-14 86.7 4.4 101 29-130 59-169 (171)
39 2hjg_A GTP-binding protein ENG 98.8 2E-09 7E-14 102.2 4.2 59 143-212 4-63 (436)
40 3t1o_A Gliding protein MGLA; G 98.8 2.2E-09 7.5E-14 89.3 3.9 101 29-130 82-192 (198)
41 1ksh_A ARF-like protein 2; sma 98.8 5.1E-09 1.7E-13 86.7 5.9 101 29-130 70-180 (186)
42 1svi_A GTP-binding protein YSX 98.8 7.2E-09 2.5E-13 86.3 6.7 86 43-128 103-193 (195)
43 2xtp_A GTPase IMAP family memb 98.8 5.6E-09 1.9E-13 91.8 6.3 67 140-217 20-88 (260)
44 2wji_A Ferrous iron transport 98.8 5.4E-09 1.9E-13 85.3 5.8 59 142-213 3-63 (165)
45 3t5d_A Septin-7; GTP-binding p 98.8 5.9E-09 2E-13 92.7 6.4 70 140-213 6-78 (274)
46 3pqc_A Probable GTP-binding pr 98.8 1.4E-08 4.8E-13 84.2 8.3 93 37-129 96-193 (195)
47 4bas_A ADP-ribosylation factor 98.8 3.7E-09 1.3E-13 88.3 4.4 104 27-130 68-189 (199)
48 3sjy_A Translation initiation 98.8 6.5E-09 2.2E-13 97.7 6.6 103 27-130 81-192 (403)
49 1jal_A YCHF protein; nucleotid 98.8 4.6E-09 1.6E-13 97.2 5.3 59 143-213 3-79 (363)
50 1zj6_A ADP-ribosylation factor 98.8 6.2E-09 2.1E-13 86.5 5.3 104 27-130 65-178 (187)
51 1wb1_A Translation elongation 98.8 1.9E-08 6.6E-13 96.7 9.4 104 26-130 78-189 (482)
52 1f5n_A Interferon-induced guan 98.8 8.6E-09 2.9E-13 101.1 6.9 63 140-215 36-106 (592)
53 3iev_A GTP-binding protein ERA 98.7 1.4E-08 4.7E-13 92.1 7.3 95 36-130 83-182 (308)
54 3cb4_D GTP-binding protein LEP 98.7 4.6E-09 1.6E-13 103.4 4.5 131 28-163 78-214 (599)
55 2wjg_A FEOB, ferrous iron tran 98.7 1.7E-08 5.9E-13 83.5 7.4 61 141-213 6-67 (188)
56 2qu8_A Putative nucleolar GTP- 98.7 1.5E-08 5E-13 87.3 7.1 62 140-213 27-89 (228)
57 2nzj_A GTP-binding protein REM 98.7 1.3E-08 4.5E-13 82.9 6.5 61 141-212 3-64 (175)
58 1r8s_A ADP-ribosylation factor 98.7 7E-09 2.4E-13 83.7 4.8 100 29-129 52-161 (164)
59 1wxq_A GTP-binding protein; st 98.7 4.9E-09 1.7E-13 98.4 4.3 58 143-212 1-83 (397)
60 2f7s_A C25KG, RAS-related prot 98.7 3.8E-08 1.3E-12 83.6 9.5 105 26-130 88-199 (217)
61 2h57_A ADP-ribosylation factor 98.7 2.4E-09 8.1E-14 89.2 1.7 98 33-130 78-187 (190)
62 2x2e_A Dynamin-1; nitration, h 98.7 9.4E-09 3.2E-13 94.9 5.7 45 117-164 9-53 (353)
63 2dyk_A GTP-binding protein; GT 98.7 3.7E-09 1.3E-13 85.0 2.5 90 35-127 69-159 (161)
64 1pui_A ENGB, probable GTP-bind 98.7 1.2E-08 4.3E-13 86.1 5.7 62 140-213 24-85 (210)
65 3geh_A MNME, tRNA modification 98.7 2.9E-09 1E-13 101.8 1.6 61 141-213 223-285 (462)
66 3bc1_A RAS-related protein RAB 98.7 2.3E-08 7.8E-13 82.7 6.7 101 29-130 78-185 (195)
67 2qtf_A Protein HFLX, GTP-bindi 98.7 1.5E-08 5.3E-13 94.0 6.1 58 142-212 178-238 (364)
68 2ohf_A Protein OLA1, GTP-bindi 98.7 1.1E-08 3.9E-13 95.6 5.1 63 140-214 20-100 (396)
69 3q72_A GTP-binding protein RAD 98.7 1.6E-08 5.3E-13 81.8 5.1 59 142-212 2-61 (166)
70 1jwy_B Dynamin A GTPase domain 98.7 4.6E-08 1.6E-12 88.2 8.8 24 141-164 23-46 (315)
71 2dyk_A GTP-binding protein; GT 98.7 1.5E-08 5.2E-13 81.3 4.8 60 143-213 2-62 (161)
72 1fzq_A ADP-ribosylation factor 98.7 1.5E-08 5.1E-13 84.0 4.9 103 27-129 65-177 (181)
73 1zd9_A ADP-ribosylation factor 98.7 2.4E-08 8.3E-13 83.1 6.2 99 29-128 75-183 (188)
74 1moz_A ARL1, ADP-ribosylation 98.7 1E-08 3.5E-13 84.4 3.8 101 29-130 70-180 (183)
75 2h17_A ADP-ribosylation factor 98.7 5E-09 1.7E-13 86.7 1.8 97 29-126 73-179 (181)
76 1z0j_A RAB-22, RAS-related pro 98.7 3.5E-08 1.2E-12 79.8 6.9 61 141-211 5-66 (170)
77 3kkq_A RAS-related protein M-R 98.7 1.1E-08 3.8E-13 84.3 3.8 98 33-130 77-182 (183)
78 3tkl_A RAS-related protein RAB 98.7 2.1E-08 7E-13 83.5 5.3 100 29-130 73-179 (196)
79 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 1.3E-08 4.5E-13 95.2 4.4 63 140-213 18-98 (392)
80 2g6b_A RAS-related protein RAB 98.6 2.6E-08 8.8E-13 81.6 5.5 101 28-130 67-174 (180)
81 2b6h_A ADP-ribosylation factor 98.6 1.1E-08 3.7E-13 85.8 3.2 99 29-128 81-189 (192)
82 1u8z_A RAS-related protein RAL 98.6 1.7E-08 5.7E-13 81.4 4.1 100 29-129 60-166 (168)
83 1z0f_A RAB14, member RAS oncog 98.6 1.7E-08 5.8E-13 82.4 4.1 98 29-128 72-176 (179)
84 2x77_A ADP-ribosylation factor 98.6 5.3E-09 1.8E-13 86.9 0.8 92 39-130 83-184 (189)
85 3dz8_A RAS-related protein RAB 98.6 5E-08 1.7E-12 81.3 6.7 105 26-130 76-186 (191)
86 1ek0_A Protein (GTP-binding pr 98.6 4.8E-08 1.7E-12 78.9 6.3 60 142-211 3-63 (170)
87 1kao_A RAP2A; GTP-binding prot 98.6 1.6E-08 5.5E-13 81.4 3.2 100 29-129 59-165 (167)
88 1s0u_A EIF-2-gamma, translatio 98.6 1E-07 3.5E-12 89.6 8.8 101 28-129 88-197 (408)
89 3q72_A GTP-binding protein RAD 98.6 5.9E-08 2E-12 78.4 6.2 105 26-130 53-164 (166)
90 2a9k_A RAS-related protein RAL 98.6 2E-08 6.9E-13 82.6 3.4 101 29-130 74-181 (187)
91 2fg5_A RAB-22B, RAS-related pr 98.6 5.9E-08 2E-12 80.9 6.3 62 140-211 21-83 (192)
92 2lkc_A Translation initiation 98.6 1.6E-08 5.3E-13 82.8 2.6 91 39-130 72-171 (178)
93 1wf3_A GTP-binding protein; GT 98.6 8.4E-08 2.9E-12 86.7 7.6 94 35-129 76-172 (301)
94 2ged_A SR-beta, signal recogni 98.6 5E-08 1.7E-12 81.1 5.5 83 113-213 22-104 (193)
95 3tw8_B RAS-related protein RAB 98.6 7.4E-08 2.5E-12 78.7 6.4 61 140-212 7-70 (181)
96 1z06_A RAS-related protein RAB 98.6 7E-08 2.4E-12 80.1 6.3 99 29-128 77-186 (189)
97 1kk1_A EIF2gamma; initiation o 98.6 8.8E-08 3E-12 90.1 7.7 103 27-130 89-200 (410)
98 2hup_A RAS-related protein RAB 98.6 7.8E-08 2.7E-12 81.0 6.7 100 29-130 86-193 (201)
99 3clv_A RAB5 protein, putative; 98.6 3E-08 1E-12 82.5 4.0 101 29-130 101-204 (208)
100 2fu5_C RAS-related protein RAB 98.6 5.4E-08 1.8E-12 80.1 5.5 100 29-130 65-171 (183)
101 4dsu_A GTPase KRAS, isoform 2B 98.6 3.2E-08 1.1E-12 81.6 4.1 101 29-130 60-166 (189)
102 1r2q_A RAS-related protein RAB 98.6 9.3E-08 3.2E-12 77.1 6.8 61 141-211 5-66 (170)
103 3con_A GTPase NRAS; structural 98.6 1.1E-07 3.6E-12 78.9 7.1 101 29-130 77-183 (190)
104 3cph_A RAS-related protein SEC 98.6 2.9E-08 9.9E-13 83.8 3.7 101 29-131 77-183 (213)
105 3r7w_A Gtpase1, GTP-binding pr 98.6 5.1E-08 1.8E-12 88.2 5.5 59 142-211 3-63 (307)
106 1lnz_A SPO0B-associated GTP-bi 98.6 1.7E-08 5.8E-13 92.9 2.3 57 144-212 160-218 (342)
107 2yc2_C IFT27, small RAB-relate 98.6 3.6E-08 1.2E-12 82.7 4.1 105 26-130 77-192 (208)
108 1g16_A RAS-related protein SEC 98.6 7.3E-08 2.5E-12 77.9 5.8 59 142-212 3-64 (170)
109 1f6b_A SAR1; gtpases, N-termin 98.6 2.1E-08 7.3E-13 84.4 2.6 100 27-126 74-195 (198)
110 2il1_A RAB12; G-protein, GDP, 98.6 4.1E-08 1.4E-12 82.0 4.3 100 29-130 83-190 (192)
111 2g6b_A RAS-related protein RAB 98.5 1.1E-07 3.7E-12 77.8 6.8 62 140-212 8-72 (180)
112 1wms_A RAB-9, RAB9, RAS-relate 98.5 8.7E-08 3E-12 78.2 6.1 61 140-210 5-66 (177)
113 1g16_A RAS-related protein SEC 98.5 4.4E-08 1.5E-12 79.2 4.0 101 28-130 59-165 (170)
114 4dcu_A GTP-binding protein ENG 98.5 7.5E-08 2.6E-12 91.8 6.1 93 38-130 270-369 (456)
115 2bov_A RAla, RAS-related prote 98.5 5.9E-08 2E-12 81.3 4.9 101 29-130 70-177 (206)
116 2lkc_A Translation initiation 98.5 3.6E-08 1.2E-12 80.6 3.3 60 140-212 6-67 (178)
117 2j69_A Bacterial dynamin-like 98.5 1.1E-07 3.8E-12 95.3 7.5 37 140-187 67-103 (695)
118 1ky3_A GTP-binding protein YPT 98.5 1.4E-07 4.9E-12 77.0 7.0 101 29-130 66-178 (182)
119 2nzj_A GTP-binding protein REM 98.5 2E-07 7E-12 75.7 7.8 91 40-130 72-169 (175)
120 1c1y_A RAS-related protein RAP 98.5 3.4E-08 1.2E-12 79.6 3.1 91 38-128 67-165 (167)
121 2dby_A GTP-binding protein; GD 98.5 4E-08 1.4E-12 91.2 3.9 59 143-213 2-82 (368)
122 3gj0_A GTP-binding nuclear pro 98.5 7.7E-08 2.6E-12 82.1 5.4 63 140-212 13-76 (221)
123 1z2a_A RAS-related protein RAB 98.5 1.2E-07 4E-12 76.5 6.0 24 141-164 4-27 (168)
124 2bme_A RAB4A, RAS-related prot 98.5 8.6E-08 3E-12 79.0 5.3 100 29-130 67-173 (186)
125 2y8e_A RAB-protein 6, GH09086P 98.5 1.4E-07 4.9E-12 76.8 6.6 59 141-211 13-74 (179)
126 1xzp_A Probable tRNA modificat 98.5 2.1E-07 7E-12 89.4 8.6 90 37-129 315-404 (482)
127 2oil_A CATX-8, RAS-related pro 98.5 1.7E-07 5.7E-12 78.0 7.0 63 140-212 23-86 (193)
128 1z0f_A RAB14, member RAS oncog 98.5 1.6E-07 5.6E-12 76.4 6.8 62 140-211 13-75 (179)
129 1m2o_B GTP-binding protein SAR 98.5 2.4E-08 8.1E-13 83.5 1.6 97 29-126 75-188 (190)
130 2efe_B Small GTP-binding prote 98.5 2.8E-08 9.6E-13 81.5 2.0 101 28-129 68-174 (181)
131 2gf9_A RAS-related protein RAB 98.5 2E-07 6.9E-12 77.3 7.2 62 141-212 21-83 (189)
132 3cph_A RAS-related protein SEC 98.5 1.4E-07 4.9E-12 79.4 6.3 61 140-212 18-81 (213)
133 2p5s_A RAS and EF-hand domain 98.5 1.4E-07 4.7E-12 79.1 6.2 63 140-212 26-89 (199)
134 1z08_A RAS-related protein RAB 98.5 1.8E-07 6.1E-12 75.7 6.6 25 140-164 4-28 (170)
135 1upt_A ARL1, ADP-ribosylation 98.5 1.4E-07 4.9E-12 76.3 6.0 58 140-211 5-62 (171)
136 2fn4_A P23, RAS-related protei 98.5 2.4E-08 8.2E-13 81.6 1.3 95 37-131 72-173 (181)
137 1kao_A RAP2A; GTP-binding prot 98.5 1.9E-07 6.5E-12 74.9 6.6 23 142-164 3-25 (167)
138 3th5_A RAS-related C3 botulinu 97.9 1.5E-08 5.2E-13 85.3 0.0 101 26-126 82-201 (204)
139 3j2k_7 ERF3, eukaryotic polype 98.5 2.9E-07 9.8E-12 87.5 8.8 94 28-122 102-217 (439)
140 3tkl_A RAS-related protein RAB 98.5 1.9E-07 6.4E-12 77.6 6.7 60 140-211 14-76 (196)
141 3gee_A MNME, tRNA modification 98.5 3.5E-07 1.2E-11 87.7 9.4 89 37-129 304-397 (476)
142 2bcg_Y Protein YP2, GTP-bindin 98.5 7.4E-08 2.5E-12 81.1 4.2 100 29-130 65-171 (206)
143 3clv_A RAB5 protein, putative; 98.5 2.2E-07 7.5E-12 77.1 7.0 25 140-164 5-29 (208)
144 1zbd_A Rabphilin-3A; G protein 98.5 1.2E-07 4E-12 79.6 5.4 100 29-130 65-171 (203)
145 1x3s_A RAS-related protein RAB 98.5 2.1E-07 7E-12 77.1 6.8 62 141-212 14-76 (195)
146 3tw8_B RAS-related protein RAB 98.5 6.2E-08 2.1E-12 79.2 3.5 101 29-130 66-171 (181)
147 1ksh_A ARF-like protein 2; sma 98.5 2.2E-07 7.6E-12 76.6 6.9 58 140-211 16-73 (186)
148 1z08_A RAS-related protein RAB 98.5 3.6E-08 1.2E-12 79.8 2.0 101 28-129 62-168 (170)
149 4dsu_A GTPase KRAS, isoform 2B 98.5 1.9E-07 6.6E-12 76.8 6.4 59 141-212 3-64 (189)
150 3q85_A GTP-binding protein REM 98.5 1.8E-07 6.2E-12 75.7 6.1 90 41-130 71-167 (169)
151 1zbd_A Rabphilin-3A; G protein 98.5 2.5E-07 8.7E-12 77.5 7.2 61 141-211 7-68 (203)
152 2o52_A RAS-related protein RAB 98.5 1.1E-07 3.6E-12 80.1 4.8 101 29-130 82-188 (200)
153 2ce2_X GTPase HRAS; signaling 98.5 8.3E-08 2.8E-12 76.9 4.0 92 38-129 67-164 (166)
154 2ew1_A RAS-related protein RAB 98.5 1.5E-07 5.1E-12 79.6 5.6 100 29-130 83-189 (201)
155 1vg8_A RAS-related protein RAB 98.5 2.4E-07 8.1E-12 77.7 6.8 61 140-212 6-69 (207)
156 2bme_A RAB4A, RAS-related prot 98.5 2.4E-07 8.2E-12 76.3 6.7 60 140-211 8-70 (186)
157 2a5j_A RAS-related protein RAB 98.5 7.5E-08 2.6E-12 80.2 3.6 100 29-130 78-184 (191)
158 1u8z_A RAS-related protein RAL 98.5 2.7E-07 9.4E-12 74.1 6.9 24 141-164 3-26 (168)
159 1z06_A RAS-related protein RAB 98.5 2.8E-07 9.5E-12 76.4 7.1 61 140-210 18-79 (189)
160 2h17_A ADP-ribosylation factor 98.5 1.8E-07 6E-12 77.2 5.8 59 140-212 19-77 (181)
161 2atx_A Small GTP binding prote 98.5 9.7E-08 3.3E-12 79.5 4.2 99 29-128 74-191 (194)
162 2efe_B Small GTP-binding prote 98.5 2.2E-07 7.6E-12 76.0 6.3 62 140-211 10-72 (181)
163 1r2q_A RAS-related protein RAB 98.5 3.4E-08 1.2E-12 79.8 1.3 98 29-127 63-166 (170)
164 3qq5_A Small GTP-binding prote 98.5 7E-08 2.4E-12 91.2 3.6 64 140-214 32-97 (423)
165 2erx_A GTP-binding protein DI- 98.5 2.5E-07 8.7E-12 74.7 6.5 23 142-164 3-25 (172)
166 3reg_A RHO-like small GTPase; 98.4 2.8E-08 9.6E-13 82.9 0.6 98 33-130 82-188 (194)
167 2hxs_A RAB-26, RAS-related pro 98.4 4.2E-08 1.4E-12 80.2 1.6 101 29-130 64-173 (178)
168 2j1l_A RHO-related GTP-binding 98.4 2.7E-07 9.2E-12 78.5 6.7 104 27-130 87-209 (214)
169 1fzq_A ADP-ribosylation factor 98.4 1.8E-07 6.1E-12 77.4 5.4 58 140-211 14-71 (181)
170 3o47_A ADP-ribosylation factor 98.4 1E-07 3.6E-12 87.1 4.3 100 29-129 217-326 (329)
171 3bwd_D RAC-like GTP-binding pr 98.4 6.1E-08 2.1E-12 79.5 2.5 96 33-128 67-179 (182)
172 2il1_A RAB12; G-protein, GDP, 98.4 2.5E-07 8.4E-12 77.2 6.2 62 140-211 24-86 (192)
173 3t5g_A GTP-binding protein RHE 98.4 2.6E-07 9E-12 75.7 6.3 62 141-213 5-67 (181)
174 2gf9_A RAS-related protein RAB 98.4 4.8E-08 1.6E-12 81.1 1.8 93 37-130 86-185 (189)
175 1moz_A ARL1, ADP-ribosylation 98.4 2.2E-07 7.4E-12 76.3 5.7 59 140-212 16-74 (183)
176 1zj6_A ADP-ribosylation factor 98.4 3.3E-07 1.1E-11 75.8 6.9 59 140-212 14-72 (187)
177 2oil_A CATX-8, RAS-related pro 98.4 9.6E-08 3.3E-12 79.5 3.5 101 29-130 82-188 (193)
178 4djt_A GTP-binding nuclear pro 98.4 2E-07 7E-12 79.1 5.6 63 140-212 9-73 (218)
179 4djt_A GTP-binding nuclear pro 98.4 5.3E-08 1.8E-12 82.8 1.8 93 37-130 76-175 (218)
180 3bc1_A RAS-related protein RAB 98.4 4.2E-07 1.4E-11 74.9 7.2 25 140-164 9-33 (195)
181 2fg5_A RAB-22B, RAS-related pr 98.4 7.9E-08 2.7E-12 80.2 2.8 99 29-129 80-185 (192)
182 1z0j_A RAB-22, RAS-related pro 98.4 1.2E-07 4E-12 76.7 3.7 99 29-128 63-167 (170)
183 2qpt_A EH domain-containing pr 98.4 1.7E-07 5.9E-12 91.4 5.5 38 141-189 64-103 (550)
184 2y8e_A RAB-protein 6, GH09086P 98.4 2.4E-08 8E-13 81.6 -0.7 99 29-128 71-175 (179)
185 2qu8_A Putative nucleolar GTP- 98.4 4E-07 1.4E-11 78.2 7.0 92 39-130 102-205 (228)
186 2fn4_A P23, RAS-related protei 98.4 4.2E-07 1.4E-11 74.1 6.9 60 140-212 7-69 (181)
187 3c5h_A Glucocorticoid receptor 98.4 2.7E-07 9.2E-12 81.1 5.9 84 45-128 162-253 (255)
188 1m2o_B GTP-binding protein SAR 98.4 3.8E-07 1.3E-11 76.1 6.5 59 140-212 21-79 (190)
189 2gco_A H9, RHO-related GTP-bin 98.4 4.8E-08 1.6E-12 82.2 0.9 99 29-128 81-198 (201)
190 1mh1_A RAC1; GTP-binding, GTPa 98.4 3.1E-08 1.1E-12 81.4 -0.2 100 29-129 61-179 (186)
191 1c1y_A RAS-related protein RAP 98.4 5.8E-07 2E-11 72.3 7.3 23 142-164 3-25 (167)
192 2hxs_A RAB-26, RAS-related pro 98.4 3E-07 1E-11 75.0 5.6 25 140-164 4-28 (178)
193 2o52_A RAS-related protein RAB 98.4 2.9E-07 9.8E-12 77.4 5.6 59 140-210 23-84 (200)
194 2c78_A Elongation factor TU-A; 98.4 1.1E-07 3.9E-12 89.2 3.4 102 27-129 81-211 (405)
195 1ky3_A GTP-binding protein YPT 98.4 2.7E-07 9.2E-12 75.4 5.2 25 140-164 6-30 (182)
196 2bcg_Y Protein YP2, GTP-bindin 98.4 3.5E-07 1.2E-11 76.9 6.1 61 140-212 6-69 (206)
197 1wms_A RAB-9, RAB9, RAS-relate 98.4 6.6E-07 2.2E-11 72.9 7.6 101 29-130 64-174 (177)
198 2a5j_A RAS-related protein RAB 98.4 3.8E-07 1.3E-11 75.8 6.2 63 140-212 19-82 (191)
199 2gf0_A GTP-binding protein DI- 98.4 4.2E-07 1.4E-11 75.6 6.4 25 140-164 6-30 (199)
200 2bov_A RAla, RAS-related prote 98.4 5.4E-07 1.9E-11 75.3 7.1 60 140-212 12-74 (206)
201 3tr5_A RF-3, peptide chain rel 98.4 2.2E-07 7.6E-12 90.2 5.2 61 28-89 89-149 (528)
202 2x77_A ADP-ribosylation factor 98.4 3.8E-07 1.3E-11 75.5 6.0 59 140-212 20-78 (189)
203 1d2e_A Elongation factor TU (E 98.4 2.9E-07 9.9E-12 86.2 5.8 102 27-129 72-194 (397)
204 2ywe_A GTP-binding protein LEP 98.4 2.8E-07 9.5E-12 90.7 5.8 101 28-130 80-184 (600)
205 2ce2_X GTPase HRAS; signaling 98.4 5.1E-07 1.8E-11 72.2 6.5 23 142-164 3-25 (166)
206 2p5s_A RAS and EF-hand domain 98.4 1.2E-07 3.9E-12 79.6 2.7 99 29-129 85-196 (199)
207 2fh5_B SR-beta, signal recogni 98.4 4.6E-07 1.6E-11 76.6 6.4 59 140-211 5-65 (214)
208 4bas_A ADP-ribosylation factor 98.4 4.5E-07 1.5E-11 75.4 6.2 59 140-212 15-75 (199)
209 1z2a_A RAS-related protein RAB 98.4 8.5E-08 2.9E-12 77.3 1.7 101 28-129 61-166 (168)
210 1ek0_A Protein (GTP-binding pr 98.4 7.3E-08 2.5E-12 77.8 1.2 97 29-127 60-166 (170)
211 2www_A Methylmalonic aciduria 98.4 9.8E-08 3.3E-12 88.0 2.2 25 140-164 72-96 (349)
212 3zvr_A Dynamin-1; hydrolase, D 98.4 6.8E-07 2.3E-11 89.9 8.3 56 109-164 18-73 (772)
213 1r8s_A ADP-ribosylation factor 98.4 4.9E-07 1.7E-11 72.7 6.0 55 143-211 1-55 (164)
214 2atv_A RERG, RAS-like estrogen 98.4 1.5E-07 5.3E-12 78.6 3.0 100 29-130 84-191 (196)
215 3oes_A GTPase rhebl1; small GT 98.4 5.5E-08 1.9E-12 81.8 0.2 94 37-130 87-187 (201)
216 1zun_B Sulfate adenylate trans 98.3 2.5E-07 8.7E-12 87.6 4.7 91 28-119 111-213 (434)
217 3iby_A Ferrous iron transport 98.3 1.1E-07 3.9E-12 83.8 2.1 79 44-127 82-164 (256)
218 3oes_A GTPase rhebl1; small GT 98.3 4.5E-07 1.5E-11 76.1 5.7 25 140-164 22-46 (201)
219 2a9k_A RAS-related protein RAL 98.3 6.6E-07 2.2E-11 73.3 6.6 24 141-164 17-40 (187)
220 3dz8_A RAS-related protein RAB 98.3 1.7E-07 5.9E-12 77.9 3.1 60 141-210 22-82 (191)
221 2ew1_A RAS-related protein RAB 98.3 6.1E-07 2.1E-11 75.8 6.5 59 140-210 24-85 (201)
222 2gf0_A GTP-binding protein DI- 98.3 1.9E-07 6.4E-12 77.8 3.2 100 29-129 64-170 (199)
223 3q85_A GTP-binding protein REM 98.3 5.9E-07 2E-11 72.6 6.1 21 143-163 3-23 (169)
224 2elf_A Protein translation elo 98.3 4.8E-07 1.6E-11 84.1 6.2 100 28-130 67-180 (370)
225 1zd9_A ADP-ribosylation factor 98.3 6.3E-07 2.2E-11 74.3 6.4 59 140-211 20-78 (188)
226 2h57_A ADP-ribosylation factor 98.3 7E-07 2.4E-11 74.0 6.5 61 140-212 19-79 (190)
227 1f6b_A SAR1; gtpases, N-termin 98.3 5E-07 1.7E-11 75.9 5.6 59 140-212 23-81 (198)
228 3kkq_A RAS-related protein M-R 98.3 9.4E-07 3.2E-11 72.5 7.2 25 140-164 16-40 (183)
229 1vg8_A RAS-related protein RAB 98.3 1.5E-07 5E-12 79.0 2.3 101 29-130 65-175 (207)
230 3q3j_B RHO-related GTP-binding 98.3 5.3E-08 1.8E-12 83.0 -0.5 104 27-130 80-203 (214)
231 2iwr_A Centaurin gamma 1; ANK 98.3 4.9E-07 1.7E-11 73.9 5.3 61 140-212 5-66 (178)
232 1ega_A Protein (GTP-binding pr 98.3 5.6E-07 1.9E-11 81.2 6.2 89 40-129 83-174 (301)
233 4gzl_A RAS-related C3 botulinu 98.3 4.3E-08 1.5E-12 82.9 -1.4 97 29-126 86-201 (204)
234 3cpj_B GTP-binding protein YPT 98.3 9.3E-08 3.2E-12 81.8 0.6 100 29-130 70-176 (223)
235 2fu5_C RAS-related protein RAB 98.3 1.9E-07 6.6E-12 76.7 2.6 60 141-212 7-69 (183)
236 3lvq_E ARF-GAP with SH3 domain 98.3 1.7E-07 5.8E-12 90.1 2.5 104 27-130 371-484 (497)
237 2erx_A GTP-binding protein DI- 98.3 8.4E-08 2.9E-12 77.6 0.3 92 37-128 66-165 (172)
238 2gj8_A MNME, tRNA modification 98.3 1.1E-07 3.8E-12 78.2 0.9 88 37-129 75-165 (172)
239 3cbq_A GTP-binding protein REM 98.3 5.4E-07 1.8E-11 75.6 5.2 61 140-212 21-84 (195)
240 2q3h_A RAS homolog gene family 98.3 9.1E-07 3.1E-11 73.9 6.6 60 140-212 18-80 (201)
241 2atv_A RERG, RAS-like estrogen 98.3 1.2E-06 4.2E-11 73.0 7.3 25 140-164 26-50 (196)
242 2b6h_A ADP-ribosylation factor 98.3 8.3E-07 2.8E-11 74.1 6.2 59 140-212 27-85 (192)
243 1nrj_B SR-beta, signal recogni 98.3 6.1E-07 2.1E-11 76.1 5.4 58 140-212 10-67 (218)
244 4gzl_A RAS-related C3 botulinu 98.3 1.2E-06 4.2E-11 73.8 7.2 25 140-164 28-52 (204)
245 2j0v_A RAC-like GTP-binding pr 98.3 1.3E-07 4.4E-12 80.0 1.1 94 37-130 72-180 (212)
246 3gj0_A GTP-binding nuclear pro 98.3 5.1E-08 1.8E-12 83.2 -1.5 99 29-130 72-175 (221)
247 3cbq_A GTP-binding protein REM 98.3 8.9E-07 3.1E-11 74.2 6.2 90 41-130 92-188 (195)
248 3con_A GTPase NRAS; structural 98.3 1.1E-06 3.7E-11 72.7 6.6 24 141-164 20-43 (190)
249 3p26_A Elongation factor 1 alp 98.3 3.6E-07 1.2E-11 87.7 4.1 92 27-119 117-227 (483)
250 1mh1_A RAC1; GTP-binding, GTPa 98.3 9.2E-07 3.1E-11 72.5 6.0 24 141-164 4-27 (186)
251 3geh_A MNME, tRNA modification 98.3 5.4E-07 1.9E-11 86.1 5.2 90 37-130 295-384 (462)
252 2e87_A Hypothetical protein PH 98.3 1.4E-06 4.9E-11 80.3 8.0 92 39-130 240-336 (357)
253 2q3h_A RAS homolog gene family 98.3 2E-07 6.9E-12 78.0 2.0 92 39-130 85-195 (201)
254 2fv8_A H6, RHO-related GTP-bin 98.3 3E-07 1E-11 77.6 3.1 101 28-129 80-199 (207)
255 3cpj_B GTP-binding protein YPT 98.3 7.5E-07 2.6E-11 76.1 5.6 63 140-212 11-74 (223)
256 3c5c_A RAS-like protein 12; GD 98.3 1.1E-06 3.9E-11 72.8 6.6 25 140-164 19-43 (187)
257 1g7s_A Translation initiation 98.3 3E-07 1E-11 90.5 3.4 101 29-130 78-218 (594)
258 3reg_A RHO-like small GTPase; 98.3 1.1E-06 3.6E-11 73.2 6.3 25 140-164 21-45 (194)
259 2iwr_A Centaurin gamma 1; ANK 98.3 1.3E-06 4.3E-11 71.4 6.5 90 41-130 68-169 (178)
260 2fh5_B SR-beta, signal recogni 98.3 4.3E-07 1.5E-11 76.8 3.7 99 28-127 61-213 (214)
261 3ihw_A Centg3; RAS, centaurin, 98.3 4.4E-07 1.5E-11 75.3 3.6 89 42-130 82-180 (184)
262 3llu_A RAS-related GTP-binding 98.3 1.4E-07 4.7E-12 79.0 0.4 87 40-127 90-194 (196)
263 4dkx_A RAS-related protein RAB 98.3 4.6E-07 1.6E-11 77.9 3.6 104 26-130 66-176 (216)
264 3qq5_A Small GTP-binding prote 98.3 1E-07 3.4E-12 90.1 -0.6 92 36-130 104-196 (423)
265 1m7b_A RND3/RHOE small GTP-bin 98.2 9.5E-07 3.2E-11 72.9 5.4 25 140-164 5-29 (184)
266 2hup_A RAS-related protein RAB 98.2 9.3E-07 3.2E-11 74.3 5.5 25 140-164 27-51 (201)
267 2gco_A H9, RHO-related GTP-bin 98.2 9.5E-07 3.2E-11 74.1 5.5 25 140-164 23-47 (201)
268 3avx_A Elongation factor TS, e 98.2 1.4E-06 4.8E-11 90.7 7.7 102 27-129 365-485 (1289)
269 3j2k_7 ERF3, eukaryotic polype 98.2 1E-06 3.6E-11 83.6 6.3 72 140-211 15-106 (439)
270 3l0i_B RAS-related protein RAB 98.2 1.3E-07 4.5E-12 79.3 -0.0 61 140-212 31-94 (199)
271 1lnz_A SPO0B-associated GTP-bi 98.2 4.8E-07 1.6E-11 83.2 3.3 93 37-130 228-330 (342)
272 3i8s_A Ferrous iron transport 98.2 8.9E-08 3.1E-12 85.2 -1.6 81 43-128 83-167 (274)
273 2fv8_A H6, RHO-related GTP-bin 98.2 1.3E-06 4.6E-11 73.6 5.7 24 141-164 24-47 (207)
274 3llu_A RAS-related GTP-binding 98.2 1.8E-06 6.2E-11 72.1 6.3 25 140-164 18-42 (196)
275 2f7s_A C25KG, RAS-related prot 98.2 9.7E-07 3.3E-11 74.8 4.6 25 140-164 23-47 (217)
276 2j1l_A RHO-related GTP-binding 98.2 2.1E-06 7.1E-11 72.9 6.6 24 140-163 32-55 (214)
277 2zej_A Dardarin, leucine-rich 98.2 1.6E-06 5.4E-11 71.7 5.7 22 143-164 3-24 (184)
278 3t34_A Dynamin-related protein 98.2 1.9E-06 6.6E-11 79.4 6.8 22 143-164 35-56 (360)
279 1udx_A The GTP-binding protein 98.2 1.3E-06 4.6E-11 82.2 5.7 58 143-212 158-217 (416)
280 3izq_1 HBS1P, elongation facto 98.2 9.9E-07 3.4E-11 87.1 4.7 72 140-211 165-256 (611)
281 2yc2_C IFT27, small RAB-relate 98.2 6E-07 2.1E-11 75.1 2.7 24 141-164 19-42 (208)
282 3ihw_A Centg3; RAS, centaurin, 98.2 3.4E-06 1.1E-10 69.9 7.1 25 140-164 18-42 (184)
283 3dpu_A RAB family protein; roc 98.2 2.3E-06 7.9E-11 83.1 7.1 51 114-164 13-63 (535)
284 2f9l_A RAB11B, member RAS onco 98.2 2.9E-06 9.9E-11 71.0 6.6 61 142-212 5-66 (199)
285 2cxx_A Probable GTP-binding pr 98.2 6.3E-06 2.1E-10 67.7 8.5 87 43-130 80-184 (190)
286 3a1s_A Iron(II) transport prot 98.2 1.4E-06 4.7E-11 76.9 4.7 81 44-129 82-166 (258)
287 2j0v_A RAC-like GTP-binding pr 98.2 3.2E-06 1.1E-10 71.2 6.8 25 140-164 7-31 (212)
288 3bwd_D RAC-like GTP-binding pr 98.1 1.1E-06 3.6E-11 71.9 3.6 25 140-164 6-30 (182)
289 3c5c_A RAS-like protein 12; GD 98.1 3.2E-07 1.1E-11 76.2 0.4 91 39-129 85-185 (187)
290 3p26_A Elongation factor 1 alp 98.1 1.4E-06 4.9E-11 83.6 4.9 72 140-211 31-122 (483)
291 1gwn_A RHO-related GTP-binding 98.1 2E-06 6.8E-11 72.8 5.2 25 140-164 26-50 (205)
292 2wkq_A NPH1-1, RAS-related C3 98.1 7.2E-07 2.5E-11 80.4 2.5 95 33-129 214-329 (332)
293 3q3j_B RHO-related GTP-binding 98.1 2.5E-06 8.7E-11 72.5 5.8 25 140-164 25-49 (214)
294 1jny_A EF-1-alpha, elongation 98.1 2E-06 6.7E-11 81.5 5.6 90 28-118 91-201 (435)
295 2cjw_A GTP-binding protein GEM 98.1 2E-06 7E-11 71.8 4.8 24 141-164 5-28 (192)
296 1oix_A RAS-related protein RAB 98.1 3.9E-06 1.3E-10 69.9 6.5 62 141-212 28-90 (191)
297 2atx_A Small GTP binding prote 98.1 3.4E-06 1.2E-10 70.0 6.0 24 141-164 17-40 (194)
298 3mca_A HBS1, elongation factor 98.1 7.2E-07 2.5E-11 87.8 2.1 72 140-211 175-266 (592)
299 3lvq_E ARF-GAP with SH3 domain 98.1 2.9E-06 9.9E-11 81.5 6.3 59 140-212 320-378 (497)
300 3p32_A Probable GTPase RV1496/ 98.1 5E-06 1.7E-10 76.6 7.5 85 42-130 189-284 (355)
301 2qtf_A Protein HFLX, GTP-bindi 98.1 5.7E-06 2E-10 76.6 7.8 102 29-130 241-354 (364)
302 3q5d_A Atlastin-1; G protein, 98.1 1.5E-06 5.3E-11 82.4 4.0 25 141-165 66-90 (447)
303 3izy_P Translation initiation 98.1 4.7E-07 1.6E-11 87.9 0.3 60 141-212 3-64 (537)
304 3l0i_B RAS-related protein RAB 98.1 3.4E-08 1.2E-12 82.9 -7.0 92 37-128 97-194 (199)
305 2g3y_A GTP-binding protein GEM 98.1 6.2E-06 2.1E-10 70.4 7.1 90 41-130 107-203 (211)
306 2wji_A Ferrous iron transport 98.1 5.7E-07 1.9E-11 73.1 0.4 80 44-128 80-163 (165)
307 2g3y_A GTP-binding protein GEM 98.1 4.1E-06 1.4E-10 71.5 5.8 24 140-163 35-58 (211)
308 1r5b_A Eukaryotic peptide chai 98.1 4E-06 1.4E-10 80.2 6.3 93 27-120 127-242 (467)
309 3o47_A ADP-ribosylation factor 98.1 3.7E-06 1.3E-10 76.7 5.7 56 141-211 164-220 (329)
310 1m7b_A RND3/RHOE small GTP-bin 98.1 3.5E-07 1.2E-11 75.6 -1.0 97 29-128 63-181 (184)
311 2qag_A Septin-2, protein NEDD5 98.0 3.7E-06 1.3E-10 77.7 5.0 25 140-164 35-59 (361)
312 1gwn_A RHO-related GTP-binding 98.0 1.3E-06 4.5E-11 73.9 1.7 92 35-128 89-202 (205)
313 3izq_1 HBS1P, elongation facto 98.0 1.7E-06 5.9E-11 85.4 2.6 92 28-120 252-362 (611)
314 2qm8_A GTPase/ATPase; G protei 98.0 5.9E-06 2E-10 75.7 6.0 25 140-164 53-77 (337)
315 4dkx_A RAS-related protein RAB 98.0 6.7E-06 2.3E-10 70.5 6.0 24 141-164 12-35 (216)
316 3k53_A Ferrous iron transport 98.0 1.7E-06 5.9E-11 76.5 2.3 83 43-130 79-166 (271)
317 3th5_A RAS-related C3 botulinu 97.2 8.5E-07 2.9E-11 74.4 0.0 25 140-164 28-52 (204)
318 2c78_A Elongation factor TU-A; 98.0 4E-06 1.4E-10 78.6 4.6 69 140-212 9-87 (405)
319 1yrb_A ATP(GTP)binding protein 98.0 1.7E-05 5.8E-10 69.1 8.1 93 37-130 130-257 (262)
320 1f60_A Elongation factor EEF1A 98.0 1.3E-06 4.6E-11 83.3 0.7 92 27-119 91-201 (458)
321 2zej_A Dardarin, leucine-rich 98.0 2.4E-06 8.2E-11 70.6 2.1 105 26-130 60-178 (184)
322 1tq4_A IIGP1, interferon-induc 97.9 2.3E-05 7.8E-10 73.7 8.7 66 141-213 68-133 (413)
323 3t1o_A Gliding protein MGLA; G 97.9 2.3E-06 7.9E-11 70.7 1.7 25 140-164 12-36 (198)
324 3b1v_A Ferrous iron uptake tra 97.9 2.9E-06 1E-10 75.4 2.3 80 44-128 79-162 (272)
325 3t5d_A Septin-7; GTP-binding p 97.9 4.5E-06 1.5E-10 73.9 3.4 82 45-127 115-201 (274)
326 1d2e_A Elongation factor TU (E 97.9 9.8E-06 3.4E-10 75.8 5.9 66 141-210 2-76 (397)
327 2h5e_A Peptide chain release f 97.9 1.1E-05 3.7E-10 78.3 6.4 62 27-89 88-149 (529)
328 1zo1_I IF2, translation initia 97.9 2.3E-06 8E-11 82.3 1.6 60 141-212 3-63 (501)
329 2p67_A LAO/AO transport system 97.9 7.9E-06 2.7E-10 74.8 5.1 25 140-164 54-78 (341)
330 2qag_B Septin-6, protein NEDD5 97.9 1.4E-05 4.9E-10 75.2 6.8 62 143-212 43-107 (427)
331 3l82_B F-box only protein 4; T 97.9 2.2E-05 7.4E-10 67.0 7.0 101 28-128 108-221 (227)
332 2wkq_A NPH1-1, RAS-related C3 97.9 4.6E-05 1.6E-09 68.4 9.6 60 140-212 153-215 (332)
333 1f60_A Elongation factor EEF1A 97.9 3.7E-06 1.3E-10 80.2 2.1 72 140-211 5-96 (458)
334 3dpu_A RAB family protein; roc 97.9 1.2E-06 4.1E-11 85.1 -1.6 88 41-130 117-208 (535)
335 3izy_P Translation initiation 97.9 2.5E-07 8.4E-12 89.9 -6.4 100 29-129 60-167 (537)
336 1udx_A The GTP-binding protein 97.9 2.3E-05 8E-10 73.7 7.2 90 41-130 231-325 (416)
337 3mca_A HBS1, elongation factor 97.8 5.1E-07 1.8E-11 88.8 -4.4 99 29-128 263-395 (592)
338 1wb1_A Translation elongation 97.8 7.3E-06 2.5E-10 78.7 3.6 64 141-210 18-83 (482)
339 1jwy_B Dynamin A GTPase domain 97.8 3.9E-05 1.3E-09 68.7 8.3 96 35-130 157-262 (315)
340 2wjg_A FEOB, ferrous iron tran 97.8 2.2E-06 7.5E-11 70.6 -0.1 82 44-130 84-169 (188)
341 2j69_A Bacterial dynamin-like 97.8 3.8E-05 1.3E-09 76.9 8.3 94 37-130 192-325 (695)
342 3r7w_A Gtpase1, GTP-binding pr 97.8 1.1E-05 3.8E-10 72.7 4.1 88 37-125 72-176 (307)
343 2elf_A Protein translation elo 97.8 1.3E-05 4.3E-10 74.4 4.5 49 144-212 23-72 (370)
344 3p32_A Probable GTPase RV1496/ 97.8 1.9E-05 6.6E-10 72.6 5.6 25 140-164 77-101 (355)
345 1zun_B Sulfate adenylate trans 97.8 1.8E-05 6.1E-10 74.8 5.5 25 140-164 22-46 (434)
346 1zo1_I IF2, translation initia 97.8 6E-07 2.1E-11 86.5 -5.2 98 28-126 58-163 (501)
347 3sop_A Neuronal-specific septi 97.8 2E-05 7E-10 69.8 5.1 23 143-165 3-25 (270)
348 2wsm_A Hydrogenase expression/ 97.8 2.7E-05 9.2E-10 65.9 5.6 24 141-164 29-52 (221)
349 2cjw_A GTP-binding protein GEM 97.8 6.6E-05 2.3E-09 62.4 7.8 89 42-130 77-172 (192)
350 1kk1_A EIF2gamma; initiation o 97.8 1.8E-05 6.2E-10 74.2 4.8 25 140-164 8-32 (410)
351 3sjy_A Translation initiation 97.8 3.3E-05 1.1E-09 72.3 6.5 25 140-164 6-30 (403)
352 3vqt_A RF-3, peptide chain rel 97.8 1.3E-05 4.3E-10 78.2 3.7 59 29-88 108-166 (548)
353 1s0u_A EIF-2-gamma, translatio 97.7 2.8E-05 9.5E-10 72.9 5.8 25 140-164 6-30 (408)
354 3zvr_A Dynamin-1; hydrolase, D 97.7 1.4E-05 4.7E-10 80.4 3.9 90 37-126 178-274 (772)
355 1jny_A EF-1-alpha, elongation 97.7 1.2E-05 4.3E-10 76.0 3.4 73 140-212 4-96 (435)
356 1dar_A EF-G, elongation factor 97.7 1.7E-05 5.7E-10 79.5 4.2 61 28-89 84-144 (691)
357 2aka_B Dynamin-1; fusion prote 97.7 9.8E-06 3.4E-10 72.1 2.2 95 35-129 151-252 (299)
358 3tr5_A RF-3, peptide chain rel 97.7 8.6E-06 3E-10 79.0 1.9 22 142-163 13-34 (528)
359 2xtp_A GTPase IMAP family memb 97.7 1.1E-05 3.7E-10 70.6 2.2 93 36-130 96-208 (260)
360 1cip_A Protein (guanine nucleo 97.7 3.8E-06 1.3E-10 77.5 -1.1 106 25-130 196-344 (353)
361 1pui_A ENGB, probable GTP-bind 97.7 0.00013 4.4E-09 61.0 8.6 87 43-129 106-198 (210)
362 2rdo_7 EF-G, elongation factor 97.7 7.1E-05 2.4E-09 75.0 7.8 60 28-88 89-148 (704)
363 2dy1_A Elongation factor G; tr 97.7 1.7E-05 5.7E-10 79.1 3.2 58 29-87 82-139 (665)
364 2h5e_A Peptide chain release f 97.7 3.6E-05 1.2E-09 74.7 5.3 72 141-212 12-94 (529)
365 3lxw_A GTPase IMAP family memb 97.6 4E-05 1.4E-09 66.8 4.9 89 41-130 101-208 (247)
366 2xex_A Elongation factor G; GT 97.6 3E-05 1E-09 77.6 4.5 72 140-212 8-87 (693)
367 2qnr_A Septin-2, protein NEDD5 97.6 3.7E-05 1.3E-09 69.1 4.7 24 141-164 17-40 (301)
368 1zcb_A G alpha I/13; GTP-bindi 97.6 1.2E-05 4.2E-10 74.3 1.2 106 25-130 204-353 (362)
369 2xex_A Elongation factor G; GT 97.6 2E-05 6.8E-10 78.9 2.6 60 29-89 83-142 (693)
370 3j25_A Tetracycline resistance 97.6 1.2E-05 4E-10 79.9 0.7 59 29-88 75-133 (638)
371 2wsm_A Hydrogenase expression/ 97.6 0.0001 3.5E-09 62.3 6.5 81 46-130 130-214 (221)
372 2qag_C Septin-7; cell cycle, c 97.6 6.7E-05 2.3E-09 70.6 5.7 25 140-164 29-53 (418)
373 2hf9_A Probable hydrogenase ni 97.6 0.00014 4.8E-09 61.7 7.3 24 141-164 37-60 (226)
374 1g7s_A Translation initiation 97.6 4.6E-05 1.6E-09 74.9 4.5 24 141-164 4-27 (594)
375 2www_A Methylmalonic aciduria 97.6 0.00014 4.9E-09 66.7 7.6 84 42-129 184-278 (349)
376 2p67_A LAO/AO transport system 97.6 9.4E-05 3.2E-09 67.6 6.2 83 42-130 166-261 (341)
377 3lxx_A GTPase IMAP family memb 97.5 0.00011 3.7E-09 63.3 5.6 96 34-130 101-214 (239)
378 1r5b_A Eukaryotic peptide chai 97.5 3E-05 1E-09 74.0 2.1 25 140-164 41-65 (467)
379 3avx_A Elongation factor TS, e 97.5 8.6E-05 2.9E-09 77.6 5.0 69 138-210 292-369 (1289)
380 1dar_A EF-G, elongation factor 97.4 0.00011 3.9E-09 73.4 5.1 71 141-212 11-89 (691)
381 2qag_A Septin-2, protein NEDD5 97.4 0.0002 6.8E-09 66.0 6.2 82 46-129 146-232 (361)
382 3r7w_B Gtpase2, GTP-binding pr 97.3 0.00021 7.1E-09 65.1 5.2 59 144-213 1-59 (331)
383 3l2o_B F-box only protein 4; s 97.3 9.8E-05 3.3E-09 65.9 2.9 99 30-128 195-306 (312)
384 2f9l_A RAB11B, member RAS onco 97.3 6.6E-05 2.2E-09 62.6 1.4 92 39-130 71-168 (199)
385 1ko7_A HPR kinase/phosphatase; 97.2 0.00043 1.5E-08 62.5 6.5 88 74-165 79-167 (314)
386 3ohm_A Guanine nucleotide-bind 97.2 6.4E-05 2.2E-09 68.5 1.0 105 25-130 170-318 (327)
387 2rdo_7 EF-G, elongation factor 97.2 0.00035 1.2E-08 70.0 6.1 24 141-164 9-32 (704)
388 1n0u_A EF-2, elongation factor 97.2 0.00013 4.6E-09 74.5 3.0 24 141-164 18-41 (842)
389 2j37_W Signal recognition part 97.2 0.00064 2.2E-08 65.4 7.6 24 140-163 99-122 (504)
390 2ywe_A GTP-binding protein LEP 97.2 0.00013 4.6E-09 71.6 2.8 23 142-164 6-28 (600)
391 3cb4_D GTP-binding protein LEP 97.2 0.00015 5.1E-09 71.3 3.1 70 142-212 4-83 (599)
392 4fn5_A EF-G 1, elongation fact 97.2 0.00019 6.5E-09 72.0 3.5 58 29-87 93-150 (709)
393 4fid_A G protein alpha subunit 97.1 7.6E-05 2.6E-09 68.3 0.5 105 25-129 164-327 (340)
394 3c5h_A Glucocorticoid receptor 97.1 0.00016 5.6E-09 63.1 2.4 25 140-164 17-50 (255)
395 2xtz_A Guanine nucleotide-bind 97.1 4.7E-05 1.6E-09 70.1 -1.2 105 25-129 186-344 (354)
396 1azs_C GS-alpha; complex (lyas 97.1 8.8E-05 3E-09 69.4 0.3 105 25-129 220-384 (402)
397 1wxq_A GTP-binding protein; st 97.1 0.00011 3.9E-09 68.6 1.0 48 74-121 214-261 (397)
398 1nrj_B SR-beta, signal recogni 97.1 2.6E-05 8.9E-10 65.8 -3.1 74 43-116 80-170 (218)
399 2hf9_A Probable hydrogenase ni 97.1 0.00054 1.9E-08 57.9 5.2 57 74-130 164-224 (226)
400 3t34_A Dynamin-related protein 97.0 0.00042 1.4E-08 63.6 4.3 107 18-124 139-255 (360)
401 3r7w_B Gtpase2, GTP-binding pr 97.0 0.00013 4.4E-09 66.5 0.3 100 25-125 49-169 (331)
402 2v3c_C SRP54, signal recogniti 97.0 0.00078 2.7E-08 63.6 5.5 24 141-164 98-121 (432)
403 2qnr_A Septin-2, protein NEDD5 96.9 0.00096 3.3E-08 59.8 5.5 85 44-130 125-214 (301)
404 2x2e_A Dynamin-1; nitration, h 96.9 0.00013 4.4E-09 66.9 -0.4 91 36-126 157-254 (353)
405 1yrb_A ATP(GTP)binding protein 96.9 0.00024 8.1E-09 61.7 1.2 24 140-163 12-35 (262)
406 3ney_A 55 kDa erythrocyte memb 96.8 0.00065 2.2E-08 57.3 3.6 24 141-164 18-41 (197)
407 2dy1_A Elongation factor G; tr 96.8 0.0012 4.1E-08 65.7 5.9 25 140-164 7-31 (665)
408 2qpt_A EH domain-containing pr 96.8 0.0013 4.6E-08 63.9 5.8 63 37-99 180-243 (550)
409 2qag_C Septin-7; cell cycle, c 96.7 0.00075 2.6E-08 63.4 3.3 81 45-126 138-223 (418)
410 1oix_A RAS-related protein RAB 96.7 0.00043 1.5E-08 57.3 1.1 89 39-127 95-189 (191)
411 3c8u_A Fructokinase; YP_612366 96.6 0.0022 7.4E-08 53.9 5.0 25 140-164 20-44 (208)
412 4ido_A Atlastin-1; GTPase, GTP 96.5 0.0038 1.3E-07 59.1 6.3 76 141-216 66-156 (457)
413 2qm8_A GTPase/ATPase; G protei 96.5 0.0057 1.9E-07 55.7 7.3 85 42-130 165-261 (337)
414 2ged_A SR-beta, signal recogni 96.3 0.003 1E-07 51.6 4.2 60 40-99 113-181 (193)
415 1lvg_A Guanylate kinase, GMP k 96.2 0.0021 7.2E-08 53.8 2.8 24 142-165 4-27 (198)
416 1kgd_A CASK, peripheral plasma 96.2 0.0028 9.4E-08 52.0 3.4 23 142-164 5-27 (180)
417 3szr_A Interferon-induced GTP- 96.1 0.0069 2.4E-07 59.6 6.5 22 144-165 47-68 (608)
418 1ex7_A Guanylate kinase; subst 96.1 0.0028 9.6E-08 52.8 3.0 20 145-164 4-23 (186)
419 3vqt_A RF-3, peptide chain rel 96.1 0.0036 1.2E-07 60.8 4.2 21 143-163 32-52 (548)
420 3j25_A Tetracycline resistance 96.1 0.0016 5.6E-08 64.4 1.8 69 144-213 4-80 (638)
421 3dm5_A SRP54, signal recogniti 96.1 0.019 6.4E-07 54.2 8.8 23 141-163 99-121 (443)
422 1n0u_A EF-2, elongation factor 96.1 0.00095 3.3E-08 68.2 -0.2 58 29-87 106-163 (842)
423 1ye8_A Protein THEP1, hypothet 96.1 0.0034 1.2E-07 51.7 3.3 22 144-165 2-23 (178)
424 3tr0_A Guanylate kinase, GMP k 95.9 0.0052 1.8E-07 50.9 3.7 25 141-165 6-30 (205)
425 1znw_A Guanylate kinase, GMP k 95.9 0.005 1.7E-07 51.6 3.5 25 141-165 19-43 (207)
426 1zp6_A Hypothetical protein AT 95.9 0.0053 1.8E-07 50.3 3.6 24 141-164 8-31 (191)
427 1rz3_A Hypothetical protein rb 95.8 0.013 4.3E-07 48.9 5.8 25 140-164 20-44 (201)
428 1z6g_A Guanylate kinase; struc 95.8 0.005 1.7E-07 52.3 3.1 25 141-165 22-46 (218)
429 1s96_A Guanylate kinase, GMP k 95.8 0.0059 2E-07 52.1 3.5 25 141-165 15-39 (219)
430 2qor_A Guanylate kinase; phosp 95.6 0.0059 2E-07 51.0 3.0 24 141-164 11-34 (204)
431 1odf_A YGR205W, hypothetical 3 95.6 0.021 7.2E-07 50.8 6.7 46 116-164 8-53 (290)
432 3a00_A Guanylate kinase, GMP k 95.5 0.0066 2.2E-07 50.0 2.9 22 144-165 3-24 (186)
433 3tau_A Guanylate kinase, GMP k 95.5 0.0088 3E-07 50.2 3.7 24 141-164 7-30 (208)
434 2j41_A Guanylate kinase; GMP, 95.5 0.0086 3E-07 49.5 3.6 25 141-165 5-29 (207)
435 3asz_A Uridine kinase; cytidin 95.5 0.0087 3E-07 50.0 3.6 26 140-165 4-29 (211)
436 4gp7_A Metallophosphoesterase; 95.4 0.0085 2.9E-07 48.7 3.2 23 141-163 8-30 (171)
437 3tif_A Uncharacterized ABC tra 95.4 0.0092 3.1E-07 51.4 3.4 24 141-164 30-53 (235)
438 2v9p_A Replication protein E1; 95.3 0.01 3.5E-07 53.3 3.5 26 140-165 124-149 (305)
439 4fn5_A EF-G 1, elongation fact 95.3 0.016 5.3E-07 58.1 5.1 22 143-164 14-35 (709)
440 4eun_A Thermoresistant glucoki 95.2 0.011 3.8E-07 49.1 3.3 24 141-164 28-51 (200)
441 1kag_A SKI, shikimate kinase I 95.2 0.0093 3.2E-07 48.0 2.7 22 143-164 5-26 (173)
442 2cbz_A Multidrug resistance-as 95.2 0.011 3.9E-07 50.9 3.4 24 141-164 30-53 (237)
443 1knq_A Gluconate kinase; ALFA/ 95.2 0.015 5E-07 47.0 3.9 24 141-164 7-30 (175)
444 2pcj_A ABC transporter, lipopr 95.2 0.011 3.6E-07 50.6 3.1 23 142-164 30-52 (224)
445 1mv5_A LMRA, multidrug resista 95.1 0.013 4.3E-07 50.7 3.6 25 141-165 27-51 (243)
446 2eyu_A Twitching motility prot 95.1 0.014 4.7E-07 51.2 3.8 26 140-165 23-48 (261)
447 3ec2_A DNA replication protein 95.1 0.019 6.4E-07 46.7 4.4 42 117-164 19-60 (180)
448 3uie_A Adenylyl-sulfate kinase 95.1 0.014 4.7E-07 48.5 3.6 25 140-164 23-47 (200)
449 1np6_A Molybdopterin-guanine d 95.1 0.011 3.9E-07 48.5 2.9 22 143-164 7-28 (174)
450 1b0u_A Histidine permease; ABC 95.1 0.013 4.4E-07 51.4 3.4 25 141-165 31-55 (262)
451 2bdt_A BH3686; alpha-beta prot 95.0 0.012 4.3E-07 48.1 3.1 21 144-164 4-24 (189)
452 1htw_A HI0065; nucleotide-bind 95.0 0.017 6E-07 46.5 3.7 26 140-165 31-56 (158)
453 2bbw_A Adenylate kinase 4, AK4 95.0 0.014 4.9E-07 50.1 3.4 23 141-163 26-48 (246)
454 3lw7_A Adenylate kinase relate 95.0 0.014 4.6E-07 46.6 3.0 19 144-162 3-21 (179)
455 2ff7_A Alpha-hemolysin translo 95.0 0.014 4.7E-07 50.7 3.3 24 142-165 35-58 (247)
456 2ghi_A Transport protein; mult 95.0 0.015 5E-07 50.9 3.4 25 141-165 45-69 (260)
457 3nh6_A ATP-binding cassette SU 94.9 0.01 3.6E-07 53.3 2.5 25 141-165 79-103 (306)
458 1ly1_A Polynucleotide kinase; 94.9 0.015 5.2E-07 46.8 3.3 22 143-164 3-24 (181)
459 1g6h_A High-affinity branched- 94.9 0.014 4.9E-07 50.9 3.3 24 141-164 32-55 (257)
460 2olj_A Amino acid ABC transpor 94.9 0.015 5.1E-07 51.0 3.4 25 141-165 49-73 (263)
461 3aez_A Pantothenate kinase; tr 94.9 0.017 5.8E-07 52.0 3.8 25 140-164 88-112 (312)
462 2rhm_A Putative kinase; P-loop 94.9 0.017 5.6E-07 47.2 3.5 24 141-164 4-27 (193)
463 1h65_A Chloroplast outer envel 94.9 0.027 9.2E-07 49.1 5.0 56 35-90 107-170 (270)
464 2pze_A Cystic fibrosis transme 94.9 0.015 5.1E-07 49.8 3.2 23 142-164 34-56 (229)
465 2onk_A Molybdate/tungstate ABC 94.9 0.015 5E-07 50.3 3.2 23 143-165 25-47 (240)
466 4g1u_C Hemin import ATP-bindin 94.9 0.014 4.9E-07 51.2 3.1 23 142-164 37-59 (266)
467 2zu0_C Probable ATP-dependent 94.9 0.017 5.7E-07 50.8 3.6 24 141-164 45-68 (267)
468 3gfo_A Cobalt import ATP-bindi 94.9 0.015 5E-07 51.4 3.2 23 142-164 34-56 (275)
469 2ixe_A Antigen peptide transpo 94.9 0.016 5.4E-07 51.0 3.4 25 141-165 44-68 (271)
470 3lnc_A Guanylate kinase, GMP k 94.8 0.012 4.1E-07 50.1 2.5 25 141-165 26-51 (231)
471 1gvn_B Zeta; postsegregational 94.8 0.048 1.6E-06 48.3 6.5 25 140-164 31-55 (287)
472 1vpl_A ABC transporter, ATP-bi 94.8 0.017 5.7E-07 50.5 3.4 25 141-165 40-64 (256)
473 1qhx_A CPT, protein (chloramph 94.8 0.016 5.6E-07 46.7 3.2 22 143-164 4-25 (178)
474 2d2e_A SUFC protein; ABC-ATPas 94.8 0.017 5.8E-07 50.1 3.4 23 142-164 29-51 (250)
475 3kb2_A SPBC2 prophage-derived 94.8 0.016 5.4E-07 46.3 3.0 21 144-164 3-23 (173)
476 3cm0_A Adenylate kinase; ATP-b 94.8 0.018 6E-07 46.9 3.2 23 141-163 3-25 (186)
477 2f1r_A Molybdopterin-guanine d 94.8 0.0093 3.2E-07 48.9 1.5 22 144-165 4-25 (171)
478 1sgw_A Putative ABC transporte 94.7 0.015 5.1E-07 49.4 2.8 23 142-164 35-57 (214)
479 1ji0_A ABC transporter; ATP bi 94.7 0.017 5.9E-07 49.8 3.3 24 142-165 32-55 (240)
480 3b85_A Phosphate starvation-in 94.7 0.016 5.4E-07 49.0 2.9 23 143-165 23-45 (208)
481 2qi9_C Vitamin B12 import ATP- 94.7 0.017 6E-07 50.2 3.2 23 142-164 26-48 (249)
482 2yz2_A Putative ABC transporte 94.7 0.019 6.4E-07 50.4 3.4 25 141-165 32-56 (266)
483 1kht_A Adenylate kinase; phosp 94.7 0.018 6.3E-07 46.8 3.1 22 143-164 4-25 (192)
484 2qag_B Septin-6, protein NEDD5 94.6 0.021 7.2E-07 53.6 3.9 64 48-112 151-218 (427)
485 1aky_A Adenylate kinase; ATP:A 94.6 0.019 6.6E-07 48.3 3.3 24 141-164 3-26 (220)
486 2ihy_A ABC transporter, ATP-bi 94.6 0.019 6.4E-07 50.8 3.2 24 142-165 47-70 (279)
487 3vaa_A Shikimate kinase, SK; s 94.6 0.021 7.1E-07 47.4 3.3 24 141-164 24-47 (199)
488 2yhs_A FTSY, cell division pro 94.6 0.054 1.8E-06 51.8 6.5 25 140-164 291-315 (503)
489 1cke_A CK, MSSA, protein (cyti 94.5 0.02 6.8E-07 48.2 3.2 23 142-164 5-27 (227)
490 2nq2_C Hypothetical ABC transp 94.5 0.02 6.8E-07 49.9 3.2 23 142-164 31-53 (253)
491 2jaq_A Deoxyguanosine kinase; 94.5 0.02 6.8E-07 47.1 3.0 21 144-164 2-22 (205)
492 2i3b_A HCR-ntpase, human cance 94.5 0.019 6.5E-07 47.7 2.9 22 144-165 3-24 (189)
493 2plr_A DTMP kinase, probable t 94.5 0.024 8E-07 46.9 3.5 23 142-164 4-26 (213)
494 2jeo_A Uridine-cytidine kinase 94.5 0.026 9.1E-07 48.4 3.9 25 140-164 23-47 (245)
495 1jbk_A CLPB protein; beta barr 94.5 0.035 1.2E-06 44.5 4.4 23 142-164 43-65 (195)
496 2qt1_A Nicotinamide riboside k 94.4 0.025 8.5E-07 47.0 3.5 25 140-164 19-43 (207)
497 3t61_A Gluconokinase; PSI-biol 94.4 0.022 7.5E-07 47.2 3.1 23 142-164 18-40 (202)
498 1nks_A Adenylate kinase; therm 94.4 0.022 7.5E-07 46.3 3.1 21 144-164 3-23 (194)
499 2yvu_A Probable adenylyl-sulfa 94.4 0.029 1E-06 45.8 3.8 25 140-164 11-35 (186)
500 2v54_A DTMP kinase, thymidylat 94.4 0.025 8.6E-07 46.6 3.5 24 141-164 3-26 (204)
No 1
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=100.00 E-value=9.6e-40 Score=295.12 Aligned_cols=234 Identities=29% Similarity=0.451 Sum_probs=178.7
Q ss_pred CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC
Q 022351 25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC 104 (298)
Q Consensus 25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~ 104 (298)
++||||||.++.+++.+.++++|+|++|+|+++|.++.++.+.+++ .++|.++|+||+||++.+..+.|.++++..++
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~ 80 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADAAVTQQWKEHFENQGI 80 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTC
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCHHHHHHHHHHHHhcCC
Confidence 7999999999999999999999999999999999999888888875 58999999999999998788899999977788
Q ss_pred CEEEEecCCCcCHHHHHHHHHHHHHhhhh--ccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeec
Q 022351 105 PSFGVNSHNKDNVKEFLKFLQAHVRNLRK--SDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVS 182 (298)
Q Consensus 105 ~vi~iSa~~~~gi~~L~~~l~~~i~~~~~--~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~ 182 (298)
+++++||.++.|+++|++.+.+.+.+..+ .........++++++|.||||||||||+|++ .+.+.++
T Consensus 81 ~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~-----------~~~~~~~ 149 (282)
T 1puj_A 81 RSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAK-----------KNIAKTG 149 (282)
T ss_dssp CEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHT-----------SCCC---
T ss_pred cEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhc-----------CceeecC
Confidence 99999999999999999988887764211 0001124578999999999999999999983 4567899
Q ss_pred CCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCCChHHHHHHHHHHHccCCchhHHHhhcc
Q 022351 183 PQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI 262 (298)
Q Consensus 183 ~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 262 (298)
+.||+|++.+.+.+ +.+++|+||||+..+...+.+.+..+|+.|+|++..++..+++.|++++++...+.....++..
T Consensus 150 ~~~g~T~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~l~~~y~~ 227 (282)
T 1puj_A 150 DRPGITTSQQWVKV--GKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGL 227 (282)
T ss_dssp ---------CCEEE--TTTEEEEECCCCCCSCCCCHHHHHHHHHHTSSCTTSSCHHHHHHHHHHHHHHHCHHHHHHHTTC
T ss_pred CCCCeeeeeEEEEe--CCCEEEEECcCcCCCCCCCHHHHHHHHHhCCcchhhCCHHHHHHHHHHHHHHhChHHHHHHcCC
Confidence 99999999886655 3469999999999999988888899999999999999999999999999988765544444543
Q ss_pred c--CCCccccccc
Q 022351 263 N--QINKPLTLHH 273 (298)
Q Consensus 263 ~--~~~~~~~~~~ 273 (298)
+ ..+..++|+.
T Consensus 228 ~~~~~~~~~~l~~ 240 (282)
T 1puj_A 228 DEIPEDIAELFDA 240 (282)
T ss_dssp SSCCSSHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 2 2234455553
No 2
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=100.00 E-value=6.3e-36 Score=267.40 Aligned_cols=185 Identities=30% Similarity=0.473 Sum_probs=136.1
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCC
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCP 105 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~ 105 (298)
+||||||.++++++++.++++|+|++|+|+++|..+.++.+. ++ ++|+++|+||+||++.+..+.|.++++..+++
T Consensus 2 ~w~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~ 77 (262)
T 3cnl_A 2 SWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIADEKTTKKWVEFFKKQGKR 77 (262)
T ss_dssp -------CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CCCchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCCHHHHHHHHHHHHHcCCe
Confidence 799999999999999999999999999999999998887666 53 89999999999999987788999999777888
Q ss_pred EEEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCC
Q 022351 106 SFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQP 185 (298)
Q Consensus 106 vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~p 185 (298)
+ ++||.++.|+++|++.+.+.+ .+++++|.||||||||||+|.+ .....+++.|
T Consensus 78 v-~iSa~~~~gi~~L~~~l~~~~--------------~~v~~vG~~~vGKSslin~l~~-----------~~~~~~~~~~ 131 (262)
T 3cnl_A 78 V-ITTHKGEPRKVLLKKLSFDRL--------------ARVLIVGVPNTGKSTIINKLKG-----------KRASSVGAQP 131 (262)
T ss_dssp E-EECCTTSCHHHHHHHHCCCTT--------------CEEEEEESTTSSHHHHHHHHHT-----------TCC-------
T ss_pred E-EEECCCCcCHHHHHHHHHHhh--------------hheEEeCCCCCCHHHHHHHHhc-----------ccccccCCCC
Confidence 8 999999999998887763210 5899999999999999999983 4456788999
Q ss_pred CeeeeeEEEEEccCCCEEEEeCCCCCCCCC-CChhhhhhhhhhcccccCCCChHHHHHHHHHHHccC
Q 022351 186 GETKDIYSLKIASHPNIYVLDTPGILPPEI-HDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFS 251 (298)
Q Consensus 186 g~T~~~~~~~~~~~~~~~liDTPGi~~~~~-~~~~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~~~ 251 (298)
|+|+..+.+.+. .+++|+||||+..+.+ .+.+.+ .+.+++...++.|++++++..
T Consensus 132 g~T~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~---------~~~~~d~~~~~~~~~~~l~~~ 187 (262)
T 3cnl_A 132 GITKGIQWFSLE--NGVKILDTPGILYKNIFSEDLAA---------KLLLVGSLPVERIEDQRIFER 187 (262)
T ss_dssp ---CCSCEEECT--TSCEEESSCEECCCCCCSHHHHH---------HHHHTTSSCGGGCCCHHHHHH
T ss_pred CCccceEEEEeC--CCEEEEECCCcccCcCCCChhhc---------ccccCCHHHHHHHHHHHHHHh
Confidence 999988776543 4689999999999988 665443 233344555555555555543
No 3
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.91 E-value=5.1e-24 Score=199.06 Aligned_cols=160 Identities=21% Similarity=0.224 Sum_probs=125.5
Q ss_pred HHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh----hHHHHHHH-HHccCC---
Q 022351 33 AAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT----QFKEWITF-FDQQNC--- 104 (298)
Q Consensus 33 ~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~----~~~~~~~~-~~~~~~--- 104 (298)
+++.+.+..+...+++|++|+|++++..+..+.+.+++ .++|+++|+||+||++.+ ...+|... ++..++
T Consensus 59 e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~ 136 (369)
T 3ec1_A 59 DDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPV 136 (369)
T ss_dssp CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCS
T ss_pred HHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcc
Confidence 44555666666889999999999998877777777664 479999999999998753 35566553 455665
Q ss_pred CEEEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCC
Q 022351 105 PSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQ 184 (298)
Q Consensus 105 ~vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~ 184 (298)
+++.+||+++.|+++|++.+.+... ..+++++|.||||||||+|+|++... +......+++.
T Consensus 137 ~v~~iSA~~g~gi~~L~~~I~~~~~------------~~~i~~vG~~nvGKStliN~L~~~~~------~~~~~~~~~~~ 198 (369)
T 3ec1_A 137 DVCLVSAAKGIGMAKVMEAINRYRE------------GGDVYVVGCTNVGKSTFINRIIEEAT------GKGNVITTSYF 198 (369)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHHT------------TSCEEEECCTTSSHHHHHHHHHHHHH------HTTCCCEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc------------cCcEEEEcCCCCchHHHHHHHHhhcc------CCccceeecCC
Confidence 6899999999999999999876642 24799999999999999999995311 11346788999
Q ss_pred CCeeeeeEEEEEccCCCEEEEeCCCCCCCC
Q 022351 185 PGETKDIYSLKIASHPNIYVLDTPGILPPE 214 (298)
Q Consensus 185 pg~T~~~~~~~~~~~~~~~liDTPGi~~~~ 214 (298)
||||++...+.+.. +++++||||+..+.
T Consensus 199 ~gtT~~~~~~~~~~--~~~liDtPG~~~~~ 226 (369)
T 3ec1_A 199 PGTTLDMIEIPLES--GATLYDTPGIINHH 226 (369)
T ss_dssp TTSSCEEEEEECST--TCEEEECCSCCCCS
T ss_pred CCeEEeeEEEEeCC--CeEEEeCCCcCcHH
Confidence 99999988776543 48999999998764
No 4
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.90 E-value=8.4e-24 Score=197.52 Aligned_cols=160 Identities=21% Similarity=0.267 Sum_probs=119.3
Q ss_pred HHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh----hHHHHHHH-HHccCC---
Q 022351 33 AAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT----QFKEWITF-FDQQNC--- 104 (298)
Q Consensus 33 ~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~----~~~~~~~~-~~~~~~--- 104 (298)
+++.+.+..+...+|++++|+|++++..++.+.+.+++ .++|+++|+||+||++.. ...+|... ++..++
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~ 134 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPE 134 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcc
Confidence 34555566667788899999999987655556666653 479999999999998654 45566544 345566
Q ss_pred CEEEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCC-ccceeecC
Q 022351 105 PSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGK-LRHATVSP 183 (298)
Q Consensus 105 ~vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~-~~~~~~~~ 183 (298)
+++.+||+++.|+++|++.+.+... +.+++++|.||||||||+|+|++... +. .+...+++
T Consensus 135 ~v~~iSA~~g~gi~~L~~~l~~~~~------------~~~i~~vG~~nvGKStliN~L~~~~~------~~~~~~~~~~~ 196 (368)
T 3h2y_A 135 DVFLISAAKGQGIAELADAIEYYRG------------GKDVYVVGCTNVGKSTFINRMIKEFS------DETENVITTSH 196 (368)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHT------------TSCEEEEEBTTSSHHHHHHHHHHHHT------TSCSSCCEEEC
T ss_pred cEEEEeCCCCcCHHHHHhhhhhhcc------------cceEEEecCCCCChhHHHHHHHhhhc------cccccceecCC
Confidence 6899999999999999999876542 24799999999999999999985310 11 23567899
Q ss_pred CCCeeeeeEEEEEccCCCEEEEeCCCCCCCC
Q 022351 184 QPGETKDIYSLKIASHPNIYVLDTPGILPPE 214 (298)
Q Consensus 184 ~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~ 214 (298)
.||||++...+.+.. +++++||||+..+.
T Consensus 197 ~~gtT~~~~~~~~~~--~~~liDtPG~~~~~ 225 (368)
T 3h2y_A 197 FPGTTLDLIDIPLDE--ESSLYDTPGIINHH 225 (368)
T ss_dssp CC----CEEEEESSS--SCEEEECCCBCCTT
T ss_pred CCCeecceEEEEecC--CeEEEeCCCcCcHH
Confidence 999999988876543 48999999998764
No 5
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.87 E-value=1.2e-23 Score=191.45 Aligned_cols=145 Identities=20% Similarity=0.231 Sum_probs=106.4
Q ss_pred HhcCCCCeEEEEEeCCCCCCcccHHHhccCC---CCCCcEEEEEecCCCCChhh----HHHHHHHHHccCCCEEEEecCC
Q 022351 41 DRMPLVDIILEVRDARIPFSSEFDQLRNHHP---FSSSRRILVLNKMDLASPTQ----FKEWITFFDQQNCPSFGVNSHN 113 (298)
Q Consensus 41 ~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~---~~~k~~IiVlNK~DL~~~~~----~~~~~~~~~~~~~~vi~iSa~~ 113 (298)
..++++|+|++|+|++.|..+.+ .+.+++. ..++|+++|+||+||.++.. ++.|.+.|+..|++++++||.+
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~ 160 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKD 160 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHH
T ss_pred HHHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCC
Confidence 46999999999999999888776 5555542 36899999999999998744 6789999977889999999999
Q ss_pred CcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCC-------CC
Q 022351 114 KDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQ-------PG 186 (298)
Q Consensus 114 ~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~-------pg 186 (298)
+.|+++|++.. .+-.++++|.||||||||+|+|.+.. ...++.. .+
T Consensus 161 ~~g~~~L~~~~----------------~G~~~~lvG~sG~GKSTLln~L~g~~-----------~~~~G~I~~~~~~G~~ 213 (307)
T 1t9h_A 161 QDSLADIIPHF----------------QDKTTVFAGQSGVGKSSLLNAISPEL-----------GLRTNEISEHLGRGKH 213 (307)
T ss_dssp HTTCTTTGGGG----------------TTSEEEEEESHHHHHHHHHHHHCC-----------------------------
T ss_pred CCCHHHHHhhc----------------CCCEEEEECCCCCCHHHHHHHhcccc-----------cccccceeeecCCCcc
Confidence 99888766543 23488999999999999999998421 1111111 13
Q ss_pred eeeeeEEEEEccCCCEEEEeCCCCCCCCCC
Q 022351 187 ETKDIYSLKIASHPNIYVLDTPGILPPEIH 216 (298)
Q Consensus 187 ~T~~~~~~~~~~~~~~~liDTPGi~~~~~~ 216 (298)
+|+..+.+... ..+++||||+..+.+.
T Consensus 214 tt~~~~~~~~~---~g~v~dtpg~~~~~l~ 240 (307)
T 1t9h_A 214 TTRHVELIHTS---GGLVADTPGFSSLEFT 240 (307)
T ss_dssp -CCCCCEEEET---TEEEESSCSCSSCCCT
T ss_pred cccHHHHhhcC---CEEEecCCCccccccc
Confidence 45544444432 4799999999887654
No 6
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=1.5e-21 Score=186.32 Aligned_cols=167 Identities=22% Similarity=0.284 Sum_probs=117.1
Q ss_pred HHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC-CEEEEecC
Q 022351 34 AATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC-PSFGVNSH 112 (298)
Q Consensus 34 ~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~-~vi~iSa~ 112 (298)
....++..+++.+|+||+|+|++.+++..+..+..++...++|+++|+||+|+........+.+++ ..++ +++++||+
T Consensus 70 ~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~-~lg~~~~~~iSA~ 148 (439)
T 1mky_A 70 KMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELY-SLGFGEPIPVSAE 148 (439)
T ss_dssp HHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHG-GGSSCSCEECBTT
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHH-hcCCCCEEEEecc
Confidence 345566788999999999999998887776666666544589999999999985331111113333 5566 78999999
Q ss_pred CCcCHHHHHHHHHHHHHhhhhc-cC-CCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeee
Q 022351 113 NKDNVKEFLKFLQAHVRNLRKS-DY-DASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKD 190 (298)
Q Consensus 113 ~~~gi~~L~~~l~~~i~~~~~~-~~-~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~ 190 (298)
++.|+++|++.+.+.+++.... .. ......++++++|.||||||||+|+|++ .....+++.||+|++
T Consensus 149 ~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g-----------~~~~~v~~~~gtT~d 217 (439)
T 1mky_A 149 HNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILN-----------KERALVSPIPGTTRD 217 (439)
T ss_dssp TTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHT-----------STTEEECCCC-----
T ss_pred CCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhC-----------CcccccCCCCCCcCC
Confidence 9999999999998888752100 00 0123468999999999999999999983 455678999999998
Q ss_pred eEEEEE-ccCCCEEEEeCCCCCC
Q 022351 191 IYSLKI-ASHPNIYVLDTPGILP 212 (298)
Q Consensus 191 ~~~~~~-~~~~~~~liDTPGi~~ 212 (298)
.....+ ..+..+.++||||+..
T Consensus 218 ~~~~~i~~~g~~~~l~Dt~G~~~ 240 (439)
T 1mky_A 218 PVDDEVFIDGRKYVFVDTAGLRR 240 (439)
T ss_dssp -CCEEEEETTEEEEESSCSCC--
T ss_pred ceEEEEEECCEEEEEEECCCCcc
Confidence 763222 2334688999999854
No 7
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.85 E-value=4.6e-22 Score=189.66 Aligned_cols=165 Identities=18% Similarity=0.289 Sum_probs=114.0
Q ss_pred HHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC-CEEEEecC
Q 022351 34 AATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC-PSFGVNSH 112 (298)
Q Consensus 34 ~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~-~vi~iSa~ 112 (298)
+...++..++..+|++|+|+|++.+.+..+..+..++...++|+++|+||+|+.+... ...+++ ..++ +++++||+
T Consensus 71 ~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~ 147 (436)
T 2hjg_A 71 QIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGT 147 (436)
T ss_dssp HHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-------CCCSSG-GGSSCCCEECBTT
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh--hHHHHH-HcCCCCeEEEeCc
Confidence 4556677789999999999999998887777777766667899999999999975421 111223 3454 78999999
Q ss_pred CCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE
Q 022351 113 NKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY 192 (298)
Q Consensus 113 ~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~ 192 (298)
++.|+++|++.+.+.+++... .......++|+++|.||||||||+|+|++ .....+++.||||++..
T Consensus 148 ~g~gv~~L~~~i~~~l~~~~~--~~~~~~~~ki~lvG~~nvGKSSLin~l~~-----------~~~~~~~~~~gtT~d~~ 214 (436)
T 2hjg_A 148 HGLGLGDLLDAVAEHFKNIPE--TKYNEEVIQFCLIGRPNVGKSSLVNAMLG-----------EERVIVSNVAGTTRDAV 214 (436)
T ss_dssp TTBTHHHHHHHHHHTGGGCCS--SCCCTTCEEEEEECSTTSSHHHHHHHHHT-----------STTEEEC---------C
T ss_pred CCCChHHHHHHHHHhcCcccc--ccccccCcEEEEEcCCCCCHHHHHHHHhC-----------CCceeecCCCCceeeee
Confidence 999999999999877654110 01123568999999999999999999993 45567889999999876
Q ss_pred EEEE-ccCCCEEEEeCCCCCCCC
Q 022351 193 SLKI-ASHPNIYVLDTPGILPPE 214 (298)
Q Consensus 193 ~~~~-~~~~~~~liDTPGi~~~~ 214 (298)
...+ ..+..+.|+||||+....
T Consensus 215 ~~~~~~~~~~~~l~DT~G~~~~~ 237 (436)
T 2hjg_A 215 DTSFTYNQQEFVIVDTAGMRKKG 237 (436)
T ss_dssp CEEEEETTEEEEETTHHHHTCBT
T ss_pred EEEEEECCeEEEEEECCCcCcCc
Confidence 3322 233368999999987643
No 8
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.83 E-value=6e-21 Score=173.65 Aligned_cols=150 Identities=20% Similarity=0.378 Sum_probs=103.4
Q ss_pred HhcCCCCeEEEEEeCCCCCCcccHHHhcc---CCCCCCcEEEEEecCCCCChhh---HHHHHHHHHccCCCEEEEecCCC
Q 022351 41 DRMPLVDIILEVRDARIPFSSEFDQLRNH---HPFSSSRRILVLNKMDLASPTQ---FKEWITFFDQQNCPSFGVNSHNK 114 (298)
Q Consensus 41 ~~l~~aDlVl~VvDa~~p~~~~~~~l~~~---l~~~~k~~IiVlNK~DL~~~~~---~~~~~~~~~~~~~~vi~iSa~~~ 114 (298)
.++.++|++++|+|++.|..+.+ .+.++ +...++|+++|+||+||.+... .+++.+.++..+++++++||+++
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~-~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g 153 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNY-LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTG 153 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTC
T ss_pred HHHHhcCEEEEEEECCCCCCCHH-HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 47999999999999998854433 12222 2236899999999999987652 56777777777889999999999
Q ss_pred cCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCcccee-ecCCCCeeeeeEE
Q 022351 115 DNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHAT-VSPQPGETKDIYS 193 (298)
Q Consensus 115 ~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~-~~~~pg~T~~~~~ 193 (298)
.|+++|.+.+. +..++++|.+|||||||+|+|. ...... +.... .+.-..+|+....
T Consensus 154 ~gi~~L~~~l~----------------G~i~~l~G~sG~GKSTLln~l~-~~~~~~-----G~i~~~~~~G~~~t~~~~~ 211 (302)
T 2yv5_A 154 EGIDELVDYLE----------------GFICILAGPSGVGKSSILSRLT-GEELRT-----QEVSEKTERGRHTTTGVRL 211 (302)
T ss_dssp TTHHHHHHHTT----------------TCEEEEECSTTSSHHHHHHHHH-SCCCCC-----SCC---------CCCCEEE
T ss_pred CCHHHHHhhcc----------------CcEEEEECCCCCCHHHHHHHHH-HhhCcc-----cccccccCCCCCceeeEEE
Confidence 99999887653 2378999999999999999997 422110 01100 0011124444443
Q ss_pred EEEccCCCEEEEeCCCCCCCCC
Q 022351 194 LKIASHPNIYVLDTPGILPPEI 215 (298)
Q Consensus 194 ~~~~~~~~~~liDTPGi~~~~~ 215 (298)
+... ...+++||||+..+.+
T Consensus 212 ~~~~--~~g~v~d~pg~~~~~l 231 (302)
T 2yv5_A 212 IPFG--KGSFVGDTPGFSKVEA 231 (302)
T ss_dssp EEET--TTEEEESSCCCSSCCG
T ss_pred EEcC--CCcEEEECcCcCcCcc
Confidence 3332 2479999999986554
No 9
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.83 E-value=7.9e-21 Score=182.11 Aligned_cols=166 Identities=19% Similarity=0.305 Sum_probs=116.6
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC-CEEEEe
Q 022351 32 MAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC-PSFGVN 110 (298)
Q Consensus 32 m~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~-~vi~iS 110 (298)
..+...++..++..+|+||+|+|++.++...+..+..++...++|+++|+||+|+.... ..+.+++ ..++ +++++|
T Consensus 89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~--~~~~e~~-~lg~~~~~~iS 165 (456)
T 4dcu_A 89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR--ANIYDFY-SLGFGEPYPIS 165 (456)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----------CCSG-GGSSSSEEECC
T ss_pred HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh--hhHHHHH-HcCCCceEEee
Confidence 45666777788999999999999998888888778777766899999999999986432 2222333 3343 678999
Q ss_pred cCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeee
Q 022351 111 SHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKD 190 (298)
Q Consensus 111 a~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~ 190 (298)
|.++.|+.+|++.+.+.++.... ........+++++|.||||||||+|+|++ .....+++.||+|++
T Consensus 166 A~~g~gv~~L~~~i~~~l~~~~~--~~~~~~~~ki~ivG~~~vGKSslin~l~~-----------~~~~~~~~~~gtt~~ 232 (456)
T 4dcu_A 166 GTHGLGLGDLLDAVAEHFKNIPE--TKYNEEVIQFCLIGRPNVGKSSLVNAMLG-----------EERVIVSNVAGTTRD 232 (456)
T ss_dssp TTTCTTHHHHHHHHHTTGGGSCS--SCCCTTCEEEEEECSTTSSHHHHHHHHHT-----------STTEEECC------C
T ss_pred cccccchHHHHHHHHhhcccccc--cccccccceeEEecCCCCCHHHHHHHHhC-----------CCccccCCCCCeEEE
Confidence 99999999999998776543110 11234578999999999999999999983 445788999999998
Q ss_pred eEE--EEEccCCCEEEEeCCCCCCCC
Q 022351 191 IYS--LKIASHPNIYVLDTPGILPPE 214 (298)
Q Consensus 191 ~~~--~~~~~~~~~~liDTPGi~~~~ 214 (298)
... +.. .+..+.|+||||+....
T Consensus 233 ~~~~~~~~-~~~~~~l~DT~G~~~~~ 257 (456)
T 4dcu_A 233 AVDTSFTY-NQQEFVIVDTAGMRKKG 257 (456)
T ss_dssp TTSEEEEE-TTEEEEETTGGGTTTBT
T ss_pred EEEEEEEE-CCceEEEEECCCCCcCc
Confidence 753 333 33368999999987643
No 10
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.81 E-value=2.2e-20 Score=173.01 Aligned_cols=171 Identities=22% Similarity=0.217 Sum_probs=112.4
Q ss_pred cceecccCCCccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCC---CCCCcEEEEEecCCCCChhh-
Q 022351 16 GTAVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP---FSSSRRILVLNKMDLASPTQ- 91 (298)
Q Consensus 16 g~~~~~~~~~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~---~~~k~~IiVlNK~DL~~~~~- 91 (298)
|.+.--+++.+.+...- .....+..++++|.|++| |++.|..+.+ .+.+++. ..+++++||+||+||++++.
T Consensus 103 ~~I~~i~~R~~~l~R~~--~~~~~~~i~anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~ 178 (358)
T 2rcn_A 103 GIVEAVHERTSVLTRPD--FYDGVKPIAANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGM 178 (358)
T ss_dssp EEEEEECCCSCEEEEC-------CEEEEECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHH
T ss_pred ceEeEEeCCcCcccCcc--hhhHHHHHHhcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhH
Confidence 44555566666664421 112344568999999965 6777766655 4544431 25789999999999998764
Q ss_pred --HHHHHHHHHccCCCEEEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcc-h
Q 022351 92 --FKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGR-I 168 (298)
Q Consensus 92 --~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~-~ 168 (298)
++.|..+|+..|++++++|+.++.|+++|...+ .+-.++++|.||||||||+|.|.+... .
T Consensus 179 ~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~~----------------~G~~~~lvG~sG~GKSTLln~L~g~~~~~ 242 (358)
T 2rcn_A 179 DFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEAL----------------TGRISIFAGQSGVGKSSLLNALLGLQNEI 242 (358)
T ss_dssp HHHHHHHHHHHTTTCCEEECBTTTTBTHHHHHHHH----------------TTSEEEEECCTTSSHHHHHHHHHCCSSCC
T ss_pred HHHHHHHHHHHhCCCcEEEEecCCCcCHHHHHHhc----------------CCCEEEEECCCCccHHHHHHHHhcccccc
Confidence 667999998889999999999999999877643 123789999999999999999985221 0
Q ss_pred hhhhcCCccceeecCCCC----eeeeeEEEEEccCCCEEEEeCCCCCCCCCC
Q 022351 169 TAAEKGKLRHATVSPQPG----ETKDIYSLKIASHPNIYVLDTPGILPPEIH 216 (298)
Q Consensus 169 ~~~~~~~~~~~~~~~~pg----~T~~~~~~~~~~~~~~~liDTPGi~~~~~~ 216 (298)
....++..+| +|+......+.. +..++||||+....+.
T Consensus 243 --------~~G~I~~~~G~g~~tt~~~~i~~v~q--~~~l~dtpgv~e~~l~ 284 (358)
T 2rcn_A 243 --------LTNDVSNVSGLGQHTTTAARLYHFPH--GGDVIDSPGVREFGLW 284 (358)
T ss_dssp --------CCC-------------CCCEEEECTT--SCEEEECHHHHTCCCC
T ss_pred --------ccCCccccCCCCccceEEEEEEEECC--CCEecCcccHHHhhhc
Confidence 0111111112 344444333433 3578999999775443
No 11
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.78 E-value=1.5e-19 Score=164.29 Aligned_cols=152 Identities=22% Similarity=0.322 Sum_probs=100.2
Q ss_pred HHHhcCCCCeEEEEEeCCCCCCcccHHHhcc---CCCCCCcEEEEEecCCCCChhh---HHHHHHHHHccCCCEEEEecC
Q 022351 39 IADRMPLVDIILEVRDARIPFSSEFDQLRNH---HPFSSSRRILVLNKMDLASPTQ---FKEWITFFDQQNCPSFGVNSH 112 (298)
Q Consensus 39 i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~---l~~~~k~~IiVlNK~DL~~~~~---~~~~~~~~~~~~~~vi~iSa~ 112 (298)
.+.++.++|++|+|+|++.|..+.+ .+..+ +...+.|+++|+||+||.+... .++|.+.+... ++++.+||+
T Consensus 78 ~~~~~~~ad~vilV~D~~~~~~s~~-~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAk 155 (301)
T 1u0l_A 78 TKPHVANVDQVILVVTVKMPETSTY-IIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAK 155 (301)
T ss_dssp TTTTEESCCEEEEEECSSTTCCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTT
T ss_pred eccccccCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECC
Confidence 3467999999999999998764432 22222 1225799999999999987644 45566666433 789999999
Q ss_pred CCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCcccee-ecCCCCeeeee
Q 022351 113 NKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHAT-VSPQPGETKDI 191 (298)
Q Consensus 113 ~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~-~~~~pg~T~~~ 191 (298)
++.|+++++..+. +-.++++|.||+|||||+|+|.+...... +.... .+.-..+|+..
T Consensus 156 tg~gv~~lf~~l~----------------geiv~l~G~sG~GKSTll~~l~g~~~~~~-----G~i~~~~~~g~~~t~~~ 214 (301)
T 1u0l_A 156 TGMGIEELKEYLK----------------GKISTMAGLSGVGKSSLLNAINPGLKLRV-----SEVSEKLQRGRHTTTTA 214 (301)
T ss_dssp TCTTHHHHHHHHS----------------SSEEEEECSTTSSHHHHHHHHSTTCCCC------------------CCCSC
T ss_pred CCcCHHHHHHHhc----------------CCeEEEECCCCCcHHHHHHHhcccccccc-----cceecccCCCCCceeee
Confidence 9999999887763 23689999999999999999985321100 00000 00111234333
Q ss_pred EEEEEccCCCEEEEeCCCCCCCCC
Q 022351 192 YSLKIASHPNIYVLDTPGILPPEI 215 (298)
Q Consensus 192 ~~~~~~~~~~~~liDTPGi~~~~~ 215 (298)
..+... ...+++||||+..+.+
T Consensus 215 ~~~~~~--~~g~v~q~p~~~~~~~ 236 (301)
T 1u0l_A 215 QLLKFD--FGGYVVDTPGFANLEI 236 (301)
T ss_dssp CEEECT--TSCEEESSCSSTTCCC
T ss_pred EEEEcC--CCCEEEECcCCCccCC
Confidence 333332 2468999999987654
No 12
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.28 E-value=9e-14 Score=128.92 Aligned_cols=155 Identities=18% Similarity=0.178 Sum_probs=94.4
Q ss_pred EEEEeCCCCCCcccHHHhccCC--CCCCcEEEEEecCCCCChhhHHHHHHHHHc-c-CCCEEEEecCCCcCHHHHHHHHH
Q 022351 50 LEVRDARIPFSSEFDQLRNHHP--FSSSRRILVLNKMDLASPTQFKEWITFFDQ-Q-NCPSFGVNSHNKDNVKEFLKFLQ 125 (298)
Q Consensus 50 l~VvDa~~p~~~~~~~l~~~l~--~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~-~-~~~vi~iSa~~~~gi~~L~~~l~ 125 (298)
-.++++..++.+.++.+.+++. ...++.++++||+|+.++...+.|.++++. . +.....+++..+.+...+.+.+.
T Consensus 62 ~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (357)
T 2e87_A 62 RKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVASVLR 141 (357)
T ss_dssp HHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555565554421 146778899999999988887888888754 2 33322233333333444433322
Q ss_pred HHHHhhh-------h-ccCCC-CCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE
Q 022351 126 AHVRNLR-------K-SDYDA-SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI 196 (298)
Q Consensus 126 ~~i~~~~-------~-~~~~~-~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~ 196 (298)
+.-.++. . ..... .....+++++|.||||||||+|+|.+ ....++..|++|++.....+
T Consensus 142 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~------------~~~~~~~~~~~t~~~~~~~~ 209 (357)
T 2e87_A 142 DIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTT------------AKPEIASYPFTTRGINVGQF 209 (357)
T ss_dssp HTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCS------------SCCEEECCTTCSSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhC------------CCCccCCCCCeeeceeEEEE
Confidence 2111100 0 00111 24567999999999999999999983 22566778899988765433
Q ss_pred c-cCCCEEEEeCCCCCCCCCC
Q 022351 197 A-SHPNIYVLDTPGILPPEIH 216 (298)
Q Consensus 197 ~-~~~~~~liDTPGi~~~~~~ 216 (298)
. .+..+.++||||+......
T Consensus 210 ~~~~~~~~l~Dt~G~~~~~~~ 230 (357)
T 2e87_A 210 EDGYFRYQIIDTPGLLDRPIS 230 (357)
T ss_dssp EETTEEEEEEECTTTSSSCST
T ss_pred EecCceEEEEeCCCccccchh
Confidence 2 2335899999999875443
No 13
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.28 E-value=2.6e-13 Score=126.44 Aligned_cols=60 Identities=28% Similarity=0.335 Sum_probs=48.4
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCC
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILPP 213 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~ 213 (298)
..+|++||.||||||||+|+|.+ ....++++||||+++..-.+ ..+.++.++||||+...
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~------------~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~ 132 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTG------------TESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDG 132 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHS------------BCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC
T ss_pred CCeEEEECCCCCCHHHHHHHHhC------------CCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCC
Confidence 35899999999999999999982 34678999999999874222 23446999999999864
No 14
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.04 E-value=4.5e-11 Score=99.65 Aligned_cols=117 Identities=14% Similarity=0.022 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh-hHHHHHHHHHcc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT-QFKEWITFFDQQ 102 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~-~~~~~~~~~~~~ 102 (298)
||+ .+........+..+|++|+|+|+..+.+... ..+.......+.|+++|+||+|+.+.. ..+...++....
T Consensus 72 ~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 150 (195)
T 1x3s_A 72 AGQ-ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKH 150 (195)
T ss_dssp CSS-GGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHT
T ss_pred CCc-hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHc
Confidence 444 3344445577899999999999987532211 112222112478999999999996432 123334444456
Q ss_pred CCCEEEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHH
Q 022351 103 NCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSA 157 (298)
Q Consensus 103 ~~~vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSs 157 (298)
+.+++.+||+++.|+++++++|.+.+.+.... .--+.+|+||||
T Consensus 151 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~-----------~~~~~~n~gkSs 194 (195)
T 1x3s_A 151 SMLFIEASAKTCDGVQCAFEELVEKIIQTPGL-----------WESENQNSGPSS 194 (195)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHHHTSGGG-----------TCC---------
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHhhhhh-----------hcccccCCCCCC
Confidence 77899999999999999999998887652110 112456999997
No 15
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.01 E-value=3.3e-10 Score=102.57 Aligned_cols=62 Identities=35% Similarity=0.569 Sum_probs=48.5
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE-EEEccCCCEEEEeCCCCCCCC
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYVLDTPGILPPE 214 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~~~~liDTPGi~~~~ 214 (298)
...|+++|.||||||||+|+|++ .+.+.+++.|+||++... +....+.++.++||||+..+.
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g-----------~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~ 69 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLG-----------VKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 69 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT-----------SCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhC-----------CceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh
Confidence 45799999999999999999993 456677889999987653 222334468899999998754
No 16
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.01 E-value=3.3e-10 Score=102.82 Aligned_cols=65 Identities=35% Similarity=0.478 Sum_probs=51.8
Q ss_pred CCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-cc-CCCEEEEeCCCCCCCC
Q 022351 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-AS-HPNIYVLDTPGILPPE 214 (298)
Q Consensus 139 ~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~-~~~~~liDTPGi~~~~ 214 (298)
..+...|+++|.||||||||+|+|++ .+...+++.|++|++...... .. +.++.++||||+..+.
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g-----------~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLG-----------TKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPK 73 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHT-----------SCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhC-----------CCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccc
Confidence 35567999999999999999999993 556678999999988764322 22 4478999999998765
No 17
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.98 E-value=4.7e-10 Score=98.54 Aligned_cols=64 Identities=25% Similarity=0.270 Sum_probs=41.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeec-CCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVS-PQPGETKDIYSLKI-ASHPNIYVLDTPGILPPE 214 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~-~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~~ 214 (298)
...++|+++|.||||||||+|+|++ .+....+ ...|+|+......+ ..+..+.|+||||+..+.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~-----------~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~ 84 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILG-----------QRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQ 84 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHT-----------SCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTT
T ss_pred CCceEEEEECCCCCcHHHHHHHHhC-----------CCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCC
Confidence 4578999999999999999999993 2222222 22357777654332 334469999999997654
No 18
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.96 E-value=1.1e-09 Score=93.59 Aligned_cols=68 Identities=28% Similarity=0.382 Sum_probs=53.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc--cCCCEEEEeCCCCCCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA--SHPNIYVLDTPGILPPEIHD 217 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~--~~~~~~liDTPGi~~~~~~~ 217 (298)
....+|+++|.+|||||||+|+|++ ....+.++..||+|++...+.+. .+..+.|+||||+..+....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~----------~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 96 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCN----------QKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPG 96 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTT----------CSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhC----------CCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCCh
Confidence 4567999999999999999999983 22246788999999988766553 34579999999988765544
No 19
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.95 E-value=1.2e-09 Score=97.55 Aligned_cols=61 Identities=26% Similarity=0.385 Sum_probs=48.6
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCCC
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPPE 214 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~~ 214 (298)
.++|+++|.||||||||+|+|++ ....+++.||+|.+.....+. .+..+.++||||+....
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g------------~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTG------------SRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT------------TCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC------------CCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccc
Confidence 46899999999999999999983 235788999999887643332 34568999999997754
No 20
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.94 E-value=9.5e-10 Score=97.24 Aligned_cols=59 Identities=29% Similarity=0.421 Sum_probs=46.8
Q ss_pred EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPPE 214 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~~ 214 (298)
+|+++|.||||||||+|+|.+ ....+++.||+|.+.....+. .+..+.|+||||+....
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g------------~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~ 62 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTN------------ANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLV 62 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHT------------TSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHC------------CCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCccccc
Confidence 789999999999999999983 246788999999876643332 33468999999997754
No 21
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.93 E-value=1.4e-09 Score=94.64 Aligned_cols=67 Identities=27% Similarity=0.356 Sum_probs=41.5
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCC--CeeeeeEEEEE-ccCCCEEEEeCCCCCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQP--GETKDIYSLKI-ASHPNIYVLDTPGILPPEIH 216 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~p--g~T~~~~~~~~-~~~~~~~liDTPGi~~~~~~ 216 (298)
...++|+++|.+|||||||+|+|++ .. ...+..| ++|++.....+ ..+..+.|+||||+......
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g-----------~~-~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~ 94 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILG-----------RK-VFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVP 94 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHT-----------SC-CSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----
T ss_pred CCceEEEEECCCCCCHHHHHHHHcC-----------CC-cCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCC
Confidence 4568999999999999999999993 11 1233344 67777664333 23346999999999887665
Q ss_pred Ch
Q 022351 217 DV 218 (298)
Q Consensus 217 ~~ 218 (298)
+.
T Consensus 95 ~~ 96 (239)
T 3lxx_A 95 NA 96 (239)
T ss_dssp CH
T ss_pred HH
Confidence 44
No 22
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.92 E-value=1.9e-09 Score=89.90 Aligned_cols=65 Identities=29% Similarity=0.407 Sum_probs=42.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIH 216 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~ 216 (298)
....+|+++|.+|||||||+|+|++ ......+++.||+|+....+.+. .++.++||||+..+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~----------~~~~~~~~~~~~~t~~~~~~~~~--~~~~l~Dt~G~~~~~~~ 85 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLIN----------RKNLARTSSKPGKTQTLNFYIIN--DELHFVDVPGYGFAKVS 85 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHT----------C-------------CCEEEEEET--TTEEEEECCCBCCCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC----------CCCccccCCCCCceeeEEEEEEC--CcEEEEECCCCCccccC
Confidence 4568999999999999999999983 22245677889999888776553 36999999998776544
No 23
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.92 E-value=2.7e-09 Score=94.72 Aligned_cols=65 Identities=25% Similarity=0.401 Sum_probs=49.6
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPPEI 215 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~~~ 215 (298)
...++|+++|.+|+|||||+|+|++ .....+++.+++|.....+.+. .+..+.|+||||+.....
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~-----------~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~ 102 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIG-----------ERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGY 102 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHT-----------SCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhC-----------CCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCcc
Confidence 3568999999999999999999993 3445677788888776654443 333689999999976543
No 24
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.91 E-value=1.6e-09 Score=89.36 Aligned_cols=61 Identities=31% Similarity=0.497 Sum_probs=46.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILPP 213 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~~ 213 (298)
++.+|+++|.||||||||+|+|.+ .....+++.||+|++... +.+. +..+.++||||+...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~-----------~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~Dt~G~~~~ 65 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG-----------REAAIVTDIAGTTRDVLREHIHID-GMPLHIIDTAGLREA 65 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT-----------SCCSCCCSSTTCCCSCEEEEEEET-TEEEEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC-----------CCcceeeCCCCceeceeeEEEEEC-CeEEEEEECCCcccc
Confidence 467999999999999999999983 333456788999987653 3333 335889999998653
No 25
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.91 E-value=7.1e-10 Score=105.41 Aligned_cols=58 Identities=34% Similarity=0.472 Sum_probs=35.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILP 212 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~ 212 (298)
+|+++|.||||||||+|+|.+ .+.+.+++.||+|++.....+ ..+..+.|+||||+..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~-----------~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~ 61 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVK-----------KKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD 61 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-------------------------CCSEEEEEETTEEEEEEECTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhC-----------CCCceecCCCCCccceeeEEEEECCeEEEEEECCCccc
Confidence 689999999999999999983 455678999999998764332 2344689999999875
No 26
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.90 E-value=1.2e-09 Score=96.63 Aligned_cols=65 Identities=31% Similarity=0.379 Sum_probs=48.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILPPEI 215 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~~~ 215 (298)
...++|+++|.+|||||||+|+|++ ...+.+++.+++|.......+ ..+..+.|+||||+.....
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~-----------~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~ 99 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIG-----------EQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGY 99 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHT-----------SCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC-----------CCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCccc
Confidence 3568999999999999999999993 344567788888877664433 2334689999999976543
No 27
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.89 E-value=2.2e-09 Score=95.76 Aligned_cols=61 Identities=28% Similarity=0.414 Sum_probs=48.3
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCC
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPE 214 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~ 214 (298)
.++|+++|.||||||||+|+|.+ ....++++||+|.+.....+..+..+.++||||.....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g------------~~~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~ 63 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITG------------HNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMS 63 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC------------CCCCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHC------------CCCcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccC
Confidence 46899999999999999999983 23467889999987665444334479999999987653
No 28
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.89 E-value=3.1e-09 Score=93.98 Aligned_cols=63 Identities=32% Similarity=0.383 Sum_probs=48.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc-CCCEEEEeCCCCCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS-HPNIYVLDTPGILPPEI 215 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPGi~~~~~ 215 (298)
..++|+++|.||||||||+|+|.+ ....++.+||+|.+.....+.. +..+.|+||||......
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g------------~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~ 67 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTG------------TKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGY 67 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHT------------TCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHC------------CCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCC
Confidence 457899999999999999999983 2344788899998876544432 34689999999876543
No 29
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.88 E-value=8.6e-10 Score=105.89 Aligned_cols=62 Identities=32% Similarity=0.459 Sum_probs=29.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILPPE 214 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~~~ 214 (298)
.+++|+++|.||||||||+|+|++ ...+.+++.||||++... +.+ .+..+.|+||||+..+.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~-----------~~~a~vs~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~ 295 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLG-----------QERAIVSHMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAG 295 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC-----------------------------CEEEEE-TTEEEEEEC--------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC-----------CCCcccCCCCCceEEEEEEEEEE-CCeEEEEEECCCCCcch
Confidence 468999999999999999999983 445678899999999863 333 33468999999997643
No 30
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.87 E-value=5.8e-09 Score=86.55 Aligned_cols=64 Identities=33% Similarity=0.448 Sum_probs=50.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIH 216 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~ 216 (298)
....+|+++|.+|||||||+|+|++ ......++.+|+|+........ .++.++||||+......
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~-----------~~~~~~~~~~~~t~~~~~~~~~--~~~~i~Dt~G~~~~~~~ 84 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFN-----------RKIAFVSKTPGKTRSINFYLVN--SKYYFVDLPGYGYAKVS 84 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHT-----------SCCSCCCSSCCCCCCEEEEEET--TTEEEEECCCBSSSCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHc-----------CccccccCCCCCccCeEEEEEC--CcEEEEECCCCccccCC
Confidence 3457999999999999999999983 3356678889999887765443 36999999998765443
No 31
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.85 E-value=2e-09 Score=97.36 Aligned_cols=60 Identities=27% Similarity=0.346 Sum_probs=46.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE-EEEccCCCEEEEeCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYVLDTPGIL 211 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~~~~liDTPGi~ 211 (298)
+...|+++|.||||||||+|+|++ .+.+.+++.|++|++... +......++.++||||+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g-----------~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~ 67 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLG-----------QKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHT-----------CSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHC-----------CCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence 345899999999999999999993 455667889999986543 222334468899999986
No 32
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.85 E-value=2.7e-10 Score=93.96 Aligned_cols=103 Identities=16% Similarity=0.079 Sum_probs=67.6
Q ss_pred HHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHccCCCEEEEec
Q 022351 39 IADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQQNCPSFGVNS 111 (298)
Q Consensus 39 i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~~~~~vi~iSa 111 (298)
....+..+|.+++|+|+..+.+... ..+.......+.|+++|+||+|+.... ..+...+..+..+.+++.+||
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 150 (181)
T 3t5g_A 71 PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSA 150 (181)
T ss_dssp CGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEec
Confidence 4467889999999999986432211 123333333578999999999996432 123333444456778999999
Q ss_pred CCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHH
Q 022351 112 HNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSA 157 (298)
Q Consensus 112 ~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSs 157 (298)
+++.|++++++.+.+.+... -|..++||||
T Consensus 151 ~~~~~v~~l~~~l~~~~~~~----------------~~~~~~gkss 180 (181)
T 3t5g_A 151 KENQTAVDVFRRIILEAEKM----------------DGACSQGKSS 180 (181)
T ss_dssp TSHHHHHHHHHHHHHHHHTC---------------------CCBSC
T ss_pred CCCCCHHHHHHHHHHHHHHh----------------cCCcccCcCC
Confidence 99999999999998877651 2677888886
No 33
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.84 E-value=1.4e-08 Score=86.57 Aligned_cols=93 Identities=11% Similarity=0.093 Sum_probs=68.4
Q ss_pred HHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHH----HHHHc-------cCCCE
Q 022351 38 AIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWI----TFFDQ-------QNCPS 106 (298)
Q Consensus 38 ~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~----~~~~~-------~~~~v 106 (298)
........+|++++|+|+..+....+..+..++...++|+++|+||+|+.+........ +.+.. .+.++
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 187 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTV 187 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEE
T ss_pred HHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeE
Confidence 33344566899999999998777666556555544679999999999998765433222 23322 34578
Q ss_pred EEEecCCCcCHHHHHHHHHHHHHh
Q 022351 107 FGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 107 i~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+++||+++.|+++++++|.+.++.
T Consensus 188 ~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 188 QLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred EEeecCCCcCHHHHHHHHHHhcCc
Confidence 999999999999999999887754
No 34
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.84 E-value=9.4e-10 Score=105.75 Aligned_cols=61 Identities=34% Similarity=0.525 Sum_probs=49.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCC-CC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGIL-PP 213 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~-~~ 213 (298)
.+++|+++|.||||||||+|+|.+ ...+.+++.||||++... +.+ .+..+.|+||||+. .+
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~-----------~~~a~vs~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~ 305 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLN-----------EDRAIVTDIPGTTRDVISEEIVI-RGILFRIVDTAGVRSET 305 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHH-----------HTBCCCCCSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSC
T ss_pred CCCEEEEECcCCCcHHHHHHHHHC-----------CCCCccCCCCCeeeeeEEEEEec-CCeEEEEEECCCccccc
Confidence 357999999999999999999983 345678899999998763 333 34468999999998 54
No 35
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.83 E-value=4.9e-09 Score=86.79 Aligned_cols=60 Identities=28% Similarity=0.382 Sum_probs=47.0
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHD 217 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~~ 217 (298)
++|+++|.+|||||||+|+|.+ ....++..||+|.....+.+. .+.++||||+......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~------------~~~~~~~~~~~t~~~~~~~~~---~~~l~Dt~G~~~~~~~~ 61 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG------------KKVRRGKRPGVTRKIIEIEWK---NHKIIDMPGFGFMMGLP 61 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS------------CCCSSSSSTTCTTSCEEEEET---TEEEEECCCBSCCTTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhC------------cCCccCCCCCccceeEEEecC---CEEEEECCCccccccCC
Confidence 4799999999999999999983 234566778988887766554 69999999987654433
No 36
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.82 E-value=6.9e-09 Score=92.79 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
....+|+++|.||||||||+|+|++
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g 48 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVG 48 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHC
Confidence 3467999999999999999999984
No 37
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.82 E-value=7.5e-09 Score=91.86 Aligned_cols=62 Identities=32% Similarity=0.420 Sum_probs=47.9
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCCCC
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPPEI 215 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~~~ 215 (298)
.++|+++|.||||||||+|+|.+ ....++..||+|.+.....+. .+..+.++||||+.....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 65 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTG------------LRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTA 65 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHT------------TCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhC------------CCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCcccccc
Confidence 46899999999999999999983 233778899999887643332 333589999999987544
No 38
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.81 E-value=2.7e-09 Score=86.73 Aligned_cols=101 Identities=12% Similarity=0.077 Sum_probs=69.9
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--cHHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHH---
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSE--FDQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFD--- 100 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~--~~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~--- 100 (298)
||+ .+....+...+..+|++++|+|+..+.+.. ...+..++.. .+.|+++|+||+|+.+.....++.+.+.
T Consensus 59 ~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 137 (171)
T 1upt_A 59 GGL-TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPA 137 (171)
T ss_dssp CCC-GGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGG
T ss_pred CCC-hhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchh
Confidence 444 344444567899999999999998764322 1223333222 5789999999999986543334444332
Q ss_pred --ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 101 --QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 101 --~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
..+++++.+||+++.|++++++++.+.+.+
T Consensus 138 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 138 LKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp CTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 234478999999999999999999887654
No 39
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.80 E-value=2e-09 Score=102.16 Aligned_cols=59 Identities=32% Similarity=0.406 Sum_probs=33.4
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILP 212 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~ 212 (298)
.+|+++|.||||||||+|+|.+ .+.+.+++.||+|++.....+. .+..+.|+||||+..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~-----------~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~ 63 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAG-----------ERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI 63 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEE-----------EECC-----------CEEEECTTCSSCCEEEC------
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCceeecCCCCCccceEEEEEEECCceEEEEECCCCCC
Confidence 4799999999999999999983 4556789999999998765543 345699999999964
No 40
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.80 E-value=2.2e-09 Score=89.27 Aligned_cols=101 Identities=17% Similarity=0.076 Sum_probs=72.4
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc----HHHhccC-----CCCCCcEEEEEecCCCCChhhHHHHHHHH
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF----DQLRNHH-----PFSSSRRILVLNKMDLASPTQFKEWITFF 99 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~----~~l~~~l-----~~~~k~~IiVlNK~DL~~~~~~~~~~~~~ 99 (298)
||+ .+........+..+|++|+|+|+..+....+ ..+..++ ...+.|+++|+||+|+.+....++..+.+
T Consensus 82 ~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~ 160 (198)
T 3t1o_A 82 PGQ-VFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVV 160 (198)
T ss_dssp CSC-CSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CCh-HHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHH
Confidence 443 4444555678999999999999985422221 1122221 12578999999999997654455555666
Q ss_pred HccCC-CEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 100 DQQNC-PSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 100 ~~~~~-~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+..+. +++.+||+++.|+++++++|.+.+.+
T Consensus 161 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 161 DPEGKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp CTTCCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred HhcCCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 56677 89999999999999999999887755
No 41
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.80 E-value=5.1e-09 Score=86.70 Aligned_cols=101 Identities=11% Similarity=0.092 Sum_probs=71.2
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHH---
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFD--- 100 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~--- 100 (298)
||+ .+........+..+|++++|+|+..+.+..+ ..+..++.. .+.|+++|+||+|+.+....++..+.+.
T Consensus 70 ~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 148 (186)
T 1ksh_A 70 GGQ-KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDS 148 (186)
T ss_dssp CCS-HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG
T ss_pred CCC-HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhh
Confidence 454 5555566678999999999999987643222 122222222 4789999999999976544444444432
Q ss_pred --ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 101 --QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 101 --~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
..+++++.+||+++.|++++++++.+.+.+
T Consensus 149 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 149 IRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp CCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 234578999999999999999999887764
No 42
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.79 E-value=7.2e-09 Score=86.31 Aligned_cols=86 Identities=12% Similarity=0.093 Sum_probs=63.5
Q ss_pred cCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHH----HHHHHH-ccCCCEEEEecCCCcCH
Q 022351 43 MPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKE----WITFFD-QQNCPSFGVNSHNKDNV 117 (298)
Q Consensus 43 l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~----~~~~~~-~~~~~vi~iSa~~~~gi 117 (298)
...+|++++|+|+..+.+..+..+..++...+.|+++|+||+|+.+...... +.+.+. ..+.+++.+||+++.|+
T Consensus 103 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 182 (195)
T 1svi_A 103 REELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGK 182 (195)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTH
T ss_pred hhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCH
Confidence 3445999999999987666555454554346799999999999987654433 223232 12457899999999999
Q ss_pred HHHHHHHHHHH
Q 022351 118 KEFLKFLQAHV 128 (298)
Q Consensus 118 ~~L~~~l~~~i 128 (298)
++++++|.+.+
T Consensus 183 ~~l~~~l~~~l 193 (195)
T 1svi_A 183 DEAWGAIKKMI 193 (195)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987665
No 43
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.79 E-value=5.6e-09 Score=91.83 Aligned_cols=67 Identities=22% Similarity=0.243 Sum_probs=46.3
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCC-eeeeeEEEEE-ccCCCEEEEeCCCCCCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPG-ETKDIYSLKI-ASHPNIYVLDTPGILPPEIHD 217 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg-~T~~~~~~~~-~~~~~~~liDTPGi~~~~~~~ 217 (298)
...++|+++|.+|||||||+|+|++ .....++..|+ +|++.....+ ..+..+.|+||||+.......
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~-----------~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~ 88 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILR-----------KQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHC 88 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHT-----------SCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhC-----------CCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCH
Confidence 3568999999999999999999983 22233444454 6766553222 234469999999998765443
No 44
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.79 E-value=5.4e-09 Score=85.29 Aligned_cols=59 Identities=29% Similarity=0.477 Sum_probs=39.5
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCCC
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILPP 213 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~~ 213 (298)
..+++++|.+|||||||+|+|.+ ....++..||+|.+... +.+. +..+.++||||....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~------------~~~~~~~~~~~t~~~~~~~~~~~-~~~l~i~Dt~G~~~~ 63 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG------------ENVYIGNWPGVTVEKKEGEFEYN-GEKFKVVDLPGVYSL 63 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC------------CSSSCC-----CCCCCEEEEEET-TEEEEEEECCCCSCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhC------------CCeeccCCCCcceeeeEEEEEEC-CcEEEEEECCCcccC
Confidence 36899999999999999999983 12335667888776543 3332 346899999998764
No 45
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.79 E-value=5.9e-09 Score=92.73 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=38.1
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCC---CEEEEeCCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP---NIYVLDTPGILPP 213 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~---~~~liDTPGi~~~ 213 (298)
...++|+++|.+|+|||||+|+|++....... .........|+++.+.....+.... .+.|+||||+...
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~----~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~ 78 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPE----YPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 78 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC-------------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccC----CCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence 34589999999999999999999843211100 0000001133334444333333222 5899999999653
No 46
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.79 E-value=1.4e-08 Score=84.24 Aligned_cols=93 Identities=14% Similarity=0.160 Sum_probs=67.4
Q ss_pred HHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHH----HHHHc-cCCCEEEEec
Q 022351 37 RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWI----TFFDQ-QNCPSFGVNS 111 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~----~~~~~-~~~~vi~iSa 111 (298)
+........+|+|++|+|+..+.......+..++...+.|+++|+||+|+.+........ +.+.. ...+++.+||
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSS 175 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCT
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEec
Confidence 333444566799999999987766555555555444589999999999998765443332 33333 2358999999
Q ss_pred CCCcCHHHHHHHHHHHHH
Q 022351 112 HNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 112 ~~~~gi~~L~~~l~~~i~ 129 (298)
+++.|+++++++|.+.+.
T Consensus 176 ~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 176 VTGEGISELLDLISTLLK 193 (195)
T ss_dssp TTCTTHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999987664
No 47
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.78 E-value=3.7e-09 Score=88.31 Aligned_cols=104 Identities=14% Similarity=0.112 Sum_probs=71.2
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCCC----------CCCcEEEEEecCCCCChhhHHH
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHPF----------SSSRRILVLNKMDLASPTQFKE 94 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~~----------~~k~~IiVlNK~DL~~~~~~~~ 94 (298)
|..+.+.+....+...+..+|++|+|+|+..+.+... ..+..++.. .+.|+++|+||+|+......++
T Consensus 68 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~ 147 (199)
T 4bas_A 68 FDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAE 147 (199)
T ss_dssp EEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHH
T ss_pred EECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHH
Confidence 4433334455555677999999999999987643211 222332221 2789999999999987633333
Q ss_pred HHHHH------HccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 95 WITFF------DQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 95 ~~~~~------~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+.+.+ +..+++++.+||+++.|++++++.|.+.+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 148 LVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp HHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence 33322 2345678999999999999999999888765
No 48
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.78 E-value=6.5e-09 Score=97.67 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=73.8
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-CcccHHHhccCC-CCCCcEEEEEecCCCCChhhHHHHHHHH----H
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPF-SSEFDQLRNHHP-FSSSRRILVLNKMDLASPTQFKEWITFF----D 100 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~-~~~~~~l~~~l~-~~~k~~IiVlNK~DL~~~~~~~~~~~~~----~ 100 (298)
.-||| .+..+.+...+..+|++|+|+|++.+. .....+....+. ...+|+++|+||+|+.+.+......+.+ .
T Consensus 81 DtPGh-~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~ 159 (403)
T 3sjy_A 81 DAPGH-EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 159 (403)
T ss_dssp ECCCC-GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred ECCCc-HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence 34777 678888889999999999999999875 322222222211 1346899999999999876444333332 2
Q ss_pred c---cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 101 Q---QNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 101 ~---~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
. .+.+++++||+++.|+++|++.|.+.++.
T Consensus 160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred hhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 2 14579999999999999999999876643
No 49
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.77 E-value=4.6e-09 Score=97.22 Aligned_cols=59 Identities=24% Similarity=0.354 Sum_probs=40.6
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC----------------CCEEE
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH----------------PNIYV 204 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~----------------~~~~l 204 (298)
++++++|.||||||||+|+|.+ . ...+++.|++|.+.. .+.+.+. ..+.+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~-----------~-~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~l 70 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTK-----------A-GIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEF 70 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH-----------T-C------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHC-----------C-CCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEE
Confidence 5899999999999999999983 2 266788899988765 2333221 25899
Q ss_pred EeCCCCCCC
Q 022351 205 LDTPGILPP 213 (298)
Q Consensus 205 iDTPGi~~~ 213 (298)
+||||+...
T Consensus 71 vDtpGl~~~ 79 (363)
T 1jal_A 71 VDIAGLVAG 79 (363)
T ss_dssp EECCSCCTT
T ss_pred EECCCCccc
Confidence 999999763
No 50
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.76 E-value=6.2e-09 Score=86.46 Aligned_cols=104 Identities=10% Similarity=0.103 Sum_probs=68.6
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHH-
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFD- 100 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~- 100 (298)
|..++..+........+..+|++++|+|+..+.+... ..+..++.. .+.|+++|+||+|+.+....++..+.+.
T Consensus 65 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~ 144 (187)
T 1zj6_A 65 WDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKL 144 (187)
T ss_dssp EECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTG
T ss_pred EECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhCh
Confidence 4433334455555677899999999999987643221 222333222 5789999999999976433333334332
Q ss_pred ----ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 101 ----QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 101 ----~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
..+++++.+||+++.|+++++++|.+.+..
T Consensus 145 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 145 TSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp GGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred hhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 234578999999999999999999877643
No 51
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.76 E-value=1.9e-08 Score=96.67 Aligned_cols=104 Identities=18% Similarity=0.154 Sum_probs=77.0
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHH----HHHHHHHc
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFK----EWITFFDQ 101 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~----~~~~~~~~ 101 (298)
-..||| .+..+.+...+..+|++|+|+|++.+......+...++...+.|.++|+||+|+.+.+..+ +..+++..
T Consensus 78 iDtPGh-~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~ 156 (482)
T 1wb1_A 78 VDAPGH-ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQS 156 (482)
T ss_dssp CCCSSH-HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHH
T ss_pred EECCCh-HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhh
Confidence 345787 6788888999999999999999998655444333223223578889999999998754333 23333433
Q ss_pred c----CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 102 Q----NCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 102 ~----~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
. +.+++++||+++.|+++|++.|.+.++.
T Consensus 157 ~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 157 THNLKNSSIIPISAKTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp SSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hcccccceEEEEECcCCCCHHHHHHHHHHhhcC
Confidence 3 4589999999999999999999987763
No 52
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.75 E-value=8.6e-09 Score=101.06 Aligned_cols=63 Identities=27% Similarity=0.301 Sum_probs=42.3
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCe----eeeeEEE--EE--ccCCCEEEEeCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGE----TKDIYSL--KI--ASHPNIYVLDTPGIL 211 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~----T~~~~~~--~~--~~~~~~~liDTPGi~ 211 (298)
.+..+|+|+|.||||||||||+|++. ... . +++|+ |+.+..+ ++ ..+..+.|+||||+.
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~-----------~~~-~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGK-----------KKG-F-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTC-----------SSC-S-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCC-----------CCc-c-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 45678999999999999999999841 111 1 34444 4443322 11 234569999999999
Q ss_pred CCCC
Q 022351 212 PPEI 215 (298)
Q Consensus 212 ~~~~ 215 (298)
.+..
T Consensus 103 ~~~~ 106 (592)
T 1f5n_A 103 DVEK 106 (592)
T ss_dssp CGGG
T ss_pred cccc
Confidence 7654
No 53
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.74 E-value=1.4e-08 Score=92.11 Aligned_cols=95 Identities=16% Similarity=0.184 Sum_probs=73.7
Q ss_pred HHHHHHhcCCCCeEEEEEeCCCCCCcccHHH-hccCCCCCCcEEEEEecCCCC-ChhhHHHHHHHHHc-cC--CCEEEEe
Q 022351 36 TRAIADRMPLVDIILEVRDARIPFSSEFDQL-RNHHPFSSSRRILVLNKMDLA-SPTQFKEWITFFDQ-QN--CPSFGVN 110 (298)
Q Consensus 36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l-~~~l~~~~k~~IiVlNK~DL~-~~~~~~~~~~~~~~-~~--~~vi~iS 110 (298)
...+...+..+|++++|+|+..+.+..+..+ ...+...+.|+++|+||+|+. +........+.+.. .+ .+++++|
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vS 162 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPIS 162 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECB
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEe
Confidence 3556678889999999999998776666555 555555679999999999998 56555555555542 33 5799999
Q ss_pred cCCCcCHHHHHHHHHHHHHh
Q 022351 111 SHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 111 a~~~~gi~~L~~~l~~~i~~ 130 (298)
|+++.|+++|++.+.+.+++
T Consensus 163 A~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 163 ALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp TTTTBSHHHHHHHHHHHSCB
T ss_pred CCCCCCHHHHHHHHHHhCcc
Confidence 99999999999999887654
No 54
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.74 E-value=4.6e-09 Score=103.40 Aligned_cols=131 Identities=13% Similarity=0.087 Sum_probs=90.5
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh---hHHHHHHHHHccCC
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT---QFKEWITFFDQQNC 104 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~---~~~~~~~~~~~~~~ 104 (298)
-||| ..+...+...+..+|.+|+|+|+..+...............+.|+++|+||+|+.+.. ..+++.+.+.-...
T Consensus 78 TPGh-~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 78 TPGH-VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDAT 156 (599)
T ss_dssp CCCC-GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCT
T ss_pred CCCc-hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcc
Confidence 3777 5677778888999999999999988766544332221113578999999999997632 22333333311112
Q ss_pred CEEEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcC---CCCchHHHHHHHh
Q 022351 105 PSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGI---PNVGKSALANSLH 163 (298)
Q Consensus 105 ~vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~---~nvGKSsliN~L~ 163 (298)
+++++||+++.|+++|++.+.+.++... .....++...++.. +++|+.++++-+-
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~lp~p~----~~~~~p~~alI~d~~~d~~~G~v~~~rV~s 214 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDIPPPE----GDPEGPLQALIIDSWFDNYLGVVSLIRIKN 214 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHSCCCC----CCTTSCCEEEEEEEEEETTTEEEEEEEEEE
T ss_pred eEEEeecccCCCchhHHHHHhhcCCCcc----ccccCCceeeeeeccccccccEEEEEEEEe
Confidence 5899999999999999999988765421 11234566666665 8999998887765
No 55
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.74 E-value=1.7e-08 Score=83.48 Aligned_cols=61 Identities=28% Similarity=0.445 Sum_probs=45.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPP 213 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~ 213 (298)
+..+|+++|.+|||||||+|+|.+ ....++..||+|.+.....+. .+..+.++||||....
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG------------ENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT------------TCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC------------CCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCcc
Confidence 457999999999999999999983 224566778888766543322 2346889999998764
No 56
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.74 E-value=1.5e-08 Score=87.29 Aligned_cols=62 Identities=31% Similarity=0.477 Sum_probs=42.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPP 213 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~ 213 (298)
...++|+++|.+|||||||+|+|++ .. ..+++.|++|+++...... ....+.|+||||....
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~-----------~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 89 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSR-----------AN-VDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDR 89 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTT-----------TC-EEEECC-----CEEEEEEEETTEEEEEEECTTTTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC-----------CC-CccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCc
Confidence 4568999999999999999999983 22 2366788888877643322 2336899999999653
No 57
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.74 E-value=1.3e-08 Score=82.90 Aligned_cols=61 Identities=28% Similarity=0.318 Sum_probs=39.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGILP 212 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~~ 212 (298)
..++|+++|.+|||||||+|+|.+ .....+.+.+|+|.....+.+.+. ..+.++||||...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG-----------KQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC-----------C-----CCCSSSSEEEEEEEETTEEEEEEEECCC----
T ss_pred eEEEEEEECCCCccHHHHHHHHhc-----------CCCccccCccccceeEEEEEECCEEEEEEEEecCCCCc
Confidence 457999999999999999999983 333445566777765544444332 1478999999755
No 58
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.74 E-value=7e-09 Score=83.73 Aligned_cols=100 Identities=15% Similarity=0.106 Sum_probs=67.3
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--cHHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH---
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSE--FDQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD--- 100 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~--~~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~--- 100 (298)
||+ .+........+..+|++++|+|+..+.+.. ...+..++. ..+.|+++|+||+|+.+....+++.+.+.
T Consensus 52 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 130 (164)
T 1r8s_A 52 GGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 130 (164)
T ss_dssp CCC-GGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG
T ss_pred CCC-hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCccc
Confidence 454 444555667899999999999998763221 122222222 14789999999999976533333433332
Q ss_pred --ccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 101 --QQNCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 101 --~~~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
..+++++.+||+++.|++++++++.+.+.
T Consensus 131 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 131 LRHRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp CSSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred ccCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 12346899999999999999999876653
No 59
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.73 E-value=4.9e-09 Score=98.40 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEE--Ec--------------------c--
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLK--IA--------------------S-- 198 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~--~~--------------------~-- 198 (298)
++|+++|.||||||||+|+|++ .+ +.+++.|+||++..... +. .
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~-----------~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~ 68 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATL-----------VD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGL 68 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHHC-----------CC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCc
Confidence 3789999999999999999983 23 67889999998765321 10 1
Q ss_pred -CCCEEEEeCCCCCC
Q 022351 199 -HPNIYVLDTPGILP 212 (298)
Q Consensus 199 -~~~~~liDTPGi~~ 212 (298)
..++.++||||+..
T Consensus 69 ~~~~i~lvDtpG~~~ 83 (397)
T 1wxq_A 69 ALIPVKMVDVAGLVP 83 (397)
T ss_dssp EEEEEEEEECC----
T ss_pred ceEEEEEEECCCccc
Confidence 12588999999964
No 60
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.73 E-value=3.8e-08 Score=83.62 Aligned_cols=105 Identities=14% Similarity=0.057 Sum_probs=72.0
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhccCCC----CCCcEEEEEecCCCCChhh--HHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRNHHPF----SSSRRILVLNKMDLASPTQ--FKEWITF 98 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~~l~~----~~k~~IiVlNK~DL~~~~~--~~~~~~~ 98 (298)
-|......+........+..+|++|+|+|+..+.+..+ ..+...+.. .+.|+++|+||+|+.+... .+...++
T Consensus 88 l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~ 167 (217)
T 2f7s_A 88 LWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAREL 167 (217)
T ss_dssp EEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHH
Confidence 34433346666777788999999999999986533221 112222211 4689999999999965321 2233333
Q ss_pred HHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
....+++++.+||+++.|+++++++|.+.+.+
T Consensus 168 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 168 ADKYGIPYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp HHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHHCCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44557789999999999999999998877654
No 61
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.73 E-value=2.4e-09 Score=89.23 Aligned_cols=98 Identities=12% Similarity=0.090 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCCC-----CCCcEEEEEecCCCCChhhHHHHHHHHH-----
Q 022351 33 AAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHPF-----SSSRRILVLNKMDLASPTQFKEWITFFD----- 100 (298)
Q Consensus 33 ~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~~-----~~k~~IiVlNK~DL~~~~~~~~~~~~~~----- 100 (298)
.+........+..+|++++|+|+..+.+... ..+..++.. .+.|+++|+||+|+......+++.+.+.
T Consensus 78 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 157 (190)
T 2h57_A 78 GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIK 157 (190)
T ss_dssp TTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCC
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhcc
Confidence 3344445577899999999999986522111 222222111 4789999999999976543444444442
Q ss_pred ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 101 QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
..+++++.+||+++.|+++++++|.+.+.+
T Consensus 158 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 158 DKPWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp SSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred CCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 234578999999999999999999876644
No 62
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.72 E-value=9.4e-09 Score=94.88 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhh
Q 022351 117 VKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 117 i~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
+-++++.+.+.+..... .......+|+++|.||||||||+|+|++
T Consensus 9 l~~~~~~l~d~l~~~g~---~~~~~~~~I~vvG~~~~GKSSLln~L~g 53 (353)
T 2x2e_A 9 LIPLVNRLQDAFSAIGQ---NADLDLPQIAVVGGQSAGKSSVLENFVG 53 (353)
T ss_dssp CHHHHHHHHHHHHTTTC---GGGCCCCEEEEECBTTSSHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHcCC---CCCCCCCeEEEECCCCCCHHHHHHHHhC
Confidence 34455555554443210 1112346999999999999999999984
No 63
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.72 E-value=3.7e-09 Score=85.01 Aligned_cols=90 Identities=12% Similarity=0.116 Sum_probs=66.4
Q ss_pred HHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC-CEEEEecCC
Q 022351 35 ATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC-PSFGVNSHN 113 (298)
Q Consensus 35 ~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~-~vi~iSa~~ 113 (298)
....+...+..+|++++|+|+..+.......+..++...+.|+++|+||+|+.+... ...++. ..+. +++.+||++
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~~~~-~~~~~~~~~~Sa~~ 145 (161)
T 2dyk_A 69 IQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHEL--YLGPLY-GLGFGDPIPTSSEH 145 (161)
T ss_dssp HHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGG--GCGGGG-GGSSCSCEECBTTT
T ss_pred HHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchH--hHHHHH-hCCCCCeEEEeccc
Confidence 345566789999999999999987665555555544335799999999999976421 111122 4455 789999999
Q ss_pred CcCHHHHHHHHHHH
Q 022351 114 KDNVKEFLKFLQAH 127 (298)
Q Consensus 114 ~~gi~~L~~~l~~~ 127 (298)
+.|++++++++.+.
T Consensus 146 ~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 146 ARGLEELLEAIWER 159 (161)
T ss_dssp TBSHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHh
Confidence 99999999988754
No 64
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.71 E-value=1.2e-08 Score=86.08 Aligned_cols=62 Identities=29% Similarity=0.378 Sum_probs=38.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPP 213 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~ 213 (298)
..+.+++++|.+|||||||+|+|.+ ......+++.+|+|+....+.+.. ++.++||||+...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g----------~~~~~~~~~~~G~~~~~~~~~~~~--~~~l~Dt~G~~~~ 85 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN----------QKSLARTSKTPGRTQLINLFEVAD--GKRLVDLPGYGYA 85 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC----------C-------------CCEEEEEEET--TEEEEECCCCC--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC----------CCccccccCCCccceeeEEEEecC--CEEEEECcCCccc
Confidence 4678999999999999999999983 222455678889988765554433 6899999998653
No 65
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.70 E-value=2.9e-09 Score=101.82 Aligned_cols=61 Identities=39% Similarity=0.567 Sum_probs=43.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccCCCEEEEeCCCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASHPNIYVLDTPGILPP 213 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~~~~~liDTPGi~~~ 213 (298)
.+++|+++|.||||||||+|+|++ ...+.++..||+|++.. .+.+ ++..+.|+||||+..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~-----------~~~a~v~~~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~ 285 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQ-----------SDRAIVTDLPGTTRDVVESQLVV-GGIPVQVLDTAGIRET 285 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHH-----------HHBSCCSCCTTCCHHHHHHEEEE-TTEEEEECC-------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhC-----------CCcccccCCCCeeEEEEEEEEEE-CCEEEEEEECCccccc
Confidence 467999999999999999999983 34566888999999875 3333 3346899999999764
No 66
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.69 E-value=2.3e-08 Score=82.67 Aligned_cols=101 Identities=16% Similarity=0.054 Sum_probs=70.1
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HH----HhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQ----LRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQ 101 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~----l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~ 101 (298)
||+ .+........+..+|++|+|+|+..+.+..+ .. +.......+.|+++|+||+|+.+.. ..+...++...
T Consensus 78 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 156 (195)
T 3bc1_A 78 AGL-ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK 156 (195)
T ss_dssp CCS-GGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCc-HHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH
Confidence 454 4555667788999999999999986533222 11 2222112578999999999997532 12233333334
Q ss_pred cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 102 QNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+++++.+||+++.|++++++.|.+.+.+
T Consensus 157 ~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 157 YGIPYFETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp HTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999877654
No 67
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.69 E-value=1.5e-08 Score=93.96 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=35.9
Q ss_pred ceE-EEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCC
Q 022351 142 TVT-VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 142 ~~~-i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~ 212 (298)
++. ++++|.||||||||+|+|.+ ....+++.|++|++... +.+.+ ..+.++||||+..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~------------~~~~~~~~~~~T~d~~~~~i~~~g-~~v~l~DT~G~i~ 238 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTG------------LTQKVDTKLFTTMSPKRYAIPINN-RKIMLVDTVGFIR 238 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHC------------C-----------CCSCEEEEEETT-EEEEEEECCCBCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHC------------CCccccCCcccccCCEEEEEEECC-EEEEEEeCCCchh
Confidence 444 99999999999999999983 22456788899987753 33433 4688999999855
No 68
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.69 E-value=1.1e-08 Score=95.55 Aligned_cols=63 Identities=25% Similarity=0.371 Sum_probs=34.5
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEE--EEcc----------------CCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL--KIAS----------------HPN 201 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~--~~~~----------------~~~ 201 (298)
..+.+++++|.||||||||+|+|.+ .+ ..+++.|++|.++... .+.+ ...
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg-----------~~-~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~ 87 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTN-----------SQ-ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAF 87 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------------------CCSEEEEECCCHHHHHHHHHHCCSEEECCE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC-----------CC-ccccCCCccccCceeEEEEECCccceeeccccCcccccccc
Confidence 4567999999999999999999983 22 3778999999876532 2221 124
Q ss_pred EEEEeCCCCCCCC
Q 022351 202 IYVLDTPGILPPE 214 (298)
Q Consensus 202 ~~liDTPGi~~~~ 214 (298)
+.++||||+....
T Consensus 88 i~lvDtpGl~~~a 100 (396)
T 2ohf_A 88 LNVVDIAGLVKGA 100 (396)
T ss_dssp EEEEECCC-----
T ss_pred cEEEECCCccccc
Confidence 8999999998643
No 69
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.68 E-value=1.6e-08 Score=81.84 Aligned_cols=59 Identities=29% Similarity=0.350 Sum_probs=33.3
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc-CCCEEEEeCCCCCC
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS-HPNIYVLDTPGILP 212 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPGi~~ 212 (298)
.++|+++|.+|||||||+|+|.+ .....+++.+|+|.... +.+.. ...+.++||||...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~-----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g~~~ 61 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGG-----------VEDGPEAEAAGHTYDRS-IVVDGEEASLMVYDIWEQDG 61 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCC-----------C----------CEEEEE-EEETTEEEEEEEEECC----
T ss_pred eEEEEEECCCCCCHHHHHHHHcC-----------ccccCCCCccccceEEE-EEECCEEEEEEEEECCCCcc
Confidence 36899999999999999999982 34456677788887533 22322 12478999999754
No 70
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.68 E-value=4.6e-08 Score=88.19 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...+|+++|.+|||||||+|+|++
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g 46 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVG 46 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHT
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHC
Confidence 456899999999999999999985
No 71
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.67 E-value=1.5e-08 Score=81.34 Aligned_cols=60 Identities=35% Similarity=0.520 Sum_probs=37.1
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPP 213 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~ 213 (298)
.+|+++|.+|||||||+|+|.+ .....++..|++|.+.....+. .+..+.++||||....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 62 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK-----------KRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG 62 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH-----------CCC-----------CCEEEEEEETTEEEEEEECGGGCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCc
Confidence 4799999999999999999983 2334466778888776644332 2336899999998764
No 72
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.67 E-value=1.5e-08 Score=83.98 Aligned_cols=103 Identities=15% Similarity=0.084 Sum_probs=68.3
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHH-
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFD- 100 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~- 100 (298)
|..+++.+.......++..+|++++|+|+..+.+... ..+..++.. .+.|+++|+||+|+.+....++..+.+.
T Consensus 65 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~ 144 (181)
T 1fzq_A 65 WDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNL 144 (181)
T ss_dssp EECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTG
T ss_pred EECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCc
Confidence 4433334444556678899999999999986533221 223333322 5789999999999976543344433331
Q ss_pred ----ccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 101 ----QQNCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 101 ----~~~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
..+.+++.+||+++.|++++++++.+.+.
T Consensus 145 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 145 HTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp GGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred hhccCCceEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 12346899999999999999999876543
No 73
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.67 E-value=2.4e-08 Score=83.06 Aligned_cols=99 Identities=21% Similarity=0.193 Sum_probs=67.9
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHH---
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFD--- 100 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~--- 100 (298)
||+ .+....+...+..+|++++|+|+..+.+... ..+..++.. .+.|+++|+||+|+.+....+++.+.+.
T Consensus 75 ~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~ 153 (188)
T 1zd9_A 75 GGQ-PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSA 153 (188)
T ss_dssp CCS-HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGG
T ss_pred CCC-HhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhh
Confidence 454 5556666778899999999999986532221 122233222 5789999999999976533334444332
Q ss_pred --ccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351 101 --QQNCPSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 101 --~~~~~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
..+.+++.+||+++.|+++++++|.+.+
T Consensus 154 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 154 IQDREICCYSISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp CCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred hccCCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 1234689999999999999999987654
No 74
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.67 E-value=1e-08 Score=84.42 Aligned_cols=101 Identities=11% Similarity=0.063 Sum_probs=67.6
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH---
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD--- 100 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~--- 100 (298)
||+ .+........+..+|++++|+|+..+.+... ..+..++. ..+.|+++|+||+|+.+....+++.+.+.
T Consensus 70 ~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~ 148 (183)
T 1moz_A 70 GGQ-TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVE 148 (183)
T ss_dssp C-----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTT
T ss_pred CCC-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCccc
Confidence 444 3444445577899999999999987643221 22333332 25789999999999976533344444332
Q ss_pred --ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 101 --QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 101 --~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
..+++++.+||+++.|++++++++.+.+.+
T Consensus 149 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 149 LKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp CCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred ccCCceEEEEccCCCCcCHHHHHHHHHHHHHh
Confidence 123468999999999999999999887765
No 75
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.67 E-value=5e-09 Score=86.67 Aligned_cols=97 Identities=10% Similarity=0.121 Sum_probs=65.1
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH---
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD--- 100 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~--- 100 (298)
||+ .+........+..+|++++|+|+..+.+... ..+..++. ..+.|+++|+||+|+......+++.+.+.
T Consensus 73 ~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~ 151 (181)
T 2h17_A 73 GGQ-ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTS 151 (181)
T ss_dssp SSS-GGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG
T ss_pred CCC-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCccc
Confidence 344 3344445577899999999999987643221 12333322 25789999999999976433333333331
Q ss_pred --ccCCCEEEEecCCCcCHHHHHHHHHH
Q 022351 101 --QQNCPSFGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 101 --~~~~~vi~iSa~~~~gi~~L~~~l~~ 126 (298)
..+++++.+||+++.|+++++++|.+
T Consensus 152 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 152 IKDHQWHIQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp CCSSCEEEEECBTTTTBTHHHHHHHHHT
T ss_pred ccCCceEEEEccCCCCcCHHHHHHHHHh
Confidence 23447899999999999999998853
No 76
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.66 E-value=3.5e-08 Score=79.82 Aligned_cols=61 Identities=21% Similarity=0.322 Sum_probs=43.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGIL 211 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~ 211 (298)
+.++|+++|.+|||||||+|+|.+ ........+.+|++.....+.+... ..+.++||||..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 66 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVE----------DSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH----------SCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHc----------CCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch
Confidence 457999999999999999999984 1222344566777766555544322 258899999974
No 77
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.66 E-value=1.1e-08 Score=84.26 Aligned_cols=98 Identities=20% Similarity=0.073 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcCCCCeEEEEEeCCCCCCcc-----cHHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHccCCC
Q 022351 33 AAATRAIADRMPLVDIILEVRDARIPFSSE-----FDQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQQNCP 105 (298)
Q Consensus 33 ~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~-----~~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~~~~~ 105 (298)
.+........+..+|++++|+|+..+.+.. ...+.......+.|+++|+||+|+.+.. ..+...+..+..+.+
T Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~ 156 (183)
T 3kkq_A 77 EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP 156 (183)
T ss_dssp GGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCC
T ss_pred hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCe
Confidence 334444456677899999999998752211 1122222223578999999999997532 122223333344678
Q ss_pred EEEEecC-CCcCHHHHHHHHHHHHHh
Q 022351 106 SFGVNSH-NKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 106 vi~iSa~-~~~gi~~L~~~l~~~i~~ 130 (298)
++.+||+ ++.|++++++.|.+.+.+
T Consensus 157 ~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 157 YIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp EEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred EEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 9999999 999999999999877643
No 78
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.65 E-value=2.1e-08 Score=83.49 Aligned_cols=100 Identities=17% Similarity=0.155 Sum_probs=69.5
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQ 101 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~ 101 (298)
||+ .+........+..+|++++|+|+..+.+... ..+.... ..+.|+++|+||+|+.+... .....+....
T Consensus 73 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 150 (196)
T 3tkl_A 73 AGQ-ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADS 150 (196)
T ss_dssp CCS-GGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred CCc-HhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHHHH
Confidence 454 4444556678899999999999986432111 1122221 24789999999999975432 2233333445
Q ss_pred cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 102 QNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+.+++.+||+++.|+++++++|.+.+.+
T Consensus 151 ~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 151 LGIPFLETSAKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp TTCCEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 67799999999999999999999888766
No 79
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.65 E-value=1.3e-08 Score=95.19 Aligned_cols=63 Identities=21% Similarity=0.324 Sum_probs=48.5
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEcc----------------CCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIAS----------------HPN 201 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~----------------~~~ 201 (298)
..+.+++++|.||||||||+|+|.+ ...+.+++.|+||+++.. +.+.+ +..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg-----------~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~ 86 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK-----------SVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAF 86 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH-----------STTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC-----------CCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcc
Confidence 4578999999999999999999983 334478999999988653 33332 014
Q ss_pred EEEEeCCCCCCC
Q 022351 202 IYVLDTPGILPP 213 (298)
Q Consensus 202 ~~liDTPGi~~~ 213 (298)
++++||||+...
T Consensus 87 i~lvD~pGl~~~ 98 (392)
T 1ni3_A 87 LTVFDIAGLTKG 98 (392)
T ss_dssp EEEECTGGGCCC
T ss_pred eEEEeccccccC
Confidence 799999998763
No 80
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.64 E-value=2.6e-08 Score=81.62 Aligned_cols=101 Identities=11% Similarity=0.034 Sum_probs=65.4
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHH
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFD 100 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~ 100 (298)
.||+ .+....+...+..+|++++|+|+..+.+..+ ..+.... ..+.|+++|+||+|+.+.. ..+...+..+
T Consensus 67 t~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 144 (180)
T 2g6b_A 67 TAGQ-ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAK 144 (180)
T ss_dssp CCCC---------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHH
T ss_pred CCCc-HHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccCcccccCHHHHHHHHH
Confidence 3555 4555566778999999999999987533211 1122221 2578999999999997532 1222333333
Q ss_pred ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 101 QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
..+++++.+||+++.|++++++++.+.+.+
T Consensus 145 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 145 EYGLPFMETSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp HHTCCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999999887654
No 81
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.64 E-value=1.1e-08 Score=85.76 Aligned_cols=99 Identities=11% Similarity=0.060 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHH---
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFD--- 100 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~--- 100 (298)
||+ .+........+..+|++++|+|+..+.+-.. ..+..++.. .+.|+++|+||+|+.+....+++.+.+.
T Consensus 81 ~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~ 159 (192)
T 2b6h_A 81 GGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQH 159 (192)
T ss_dssp C------CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG
T ss_pred CCC-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCccc
Confidence 444 4454555667889999999999987632211 222222221 4789999999999976533344444332
Q ss_pred --ccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351 101 --QQNCPSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 101 --~~~~~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
..+++++.+||+++.|+++++++|.+.+
T Consensus 160 ~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 160 LRSRTWYVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp CSSCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred ccCCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence 1234689999999999999999987654
No 82
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.64 E-value=1.7e-08 Score=81.37 Aligned_cols=100 Identities=18% Similarity=0.043 Sum_probs=67.3
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQ 101 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~ 101 (298)
||+ .+........+..+|.+++|+|+..+.+... ..+.......+.|+++|+||+|+.+.. ..++..+....
T Consensus 60 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 138 (168)
T 1u8z_A 60 AGQ-EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ 138 (168)
T ss_dssp CC----CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred CCc-chhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHH
Confidence 454 4455556677889999999999986532111 112222222479999999999996532 12333444444
Q ss_pred cCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 102 QNCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
.+.+++.+||+++.|++++++++.+.+.
T Consensus 139 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 139 WNVNYVETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp HTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999987654
No 83
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.63 E-value=1.7e-08 Score=82.42 Aligned_cols=98 Identities=15% Similarity=0.086 Sum_probs=68.0
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-H----HhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-Q----LRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQ 101 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-~----l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~ 101 (298)
||+ .+........+..+|++++|+|+..+.+..+. . +... ...+.|+++|+||+|+.+.. ..++..++.+.
T Consensus 72 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (179)
T 1z0f_A 72 AGQ-ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE 149 (179)
T ss_dssp TTG-GGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCC-hHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence 554 44445566778899999999999875322211 1 2222 12578999999999996432 12334444455
Q ss_pred cCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351 102 QNCPSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
.+.+++.+||+++.|++++++++.+.+
T Consensus 150 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 150 NGLLFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 677899999999999999999887654
No 84
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.62 E-value=5.3e-09 Score=86.91 Aligned_cols=92 Identities=16% Similarity=0.117 Sum_probs=64.7
Q ss_pred HHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH-----ccCCCEEE
Q 022351 39 IADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD-----QQNCPSFG 108 (298)
Q Consensus 39 i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~-----~~~~~vi~ 108 (298)
....+..+|++++|+|+..+.+... ..+..++. ..+.|+++|+||+|+.+....+++.+.+. ..+++++.
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVK 162 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEE
Confidence 3456889999999999987643221 22333322 24789999999999976533333333321 22446899
Q ss_pred EecCCCcCHHHHHHHHHHHHHh
Q 022351 109 VNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 109 iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+||+++.|++++++++.+.+.+
T Consensus 163 ~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 163 SSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccCCCccCHHHHHHHHHHHHHh
Confidence 9999999999999999888765
No 85
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.62 E-value=5e-08 Score=81.25 Aligned_cols=105 Identities=12% Similarity=0.054 Sum_probs=71.3
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhccC---CCCCCcEEEEEecCCCCChh--hHHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRNHH---PFSSSRRILVLNKMDLASPT--QFKEWITFF 99 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~~l---~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~ 99 (298)
-|..+...+........+..+|++++|+|+..+.+... ..+...+ ...+.|+++|+||+|+.+.. ..+......
T Consensus 76 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 155 (191)
T 3dz8_A 76 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLA 155 (191)
T ss_dssp EECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred EEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHH
Confidence 45554446666777788999999999999986422111 1111111 12478999999999996432 112222233
Q ss_pred HccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
...+.+++.+||+++.|++++++.|.+.+.+
T Consensus 156 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 156 EQLGFDFFEASAKENISVRQAFERLVDAICD 186 (191)
T ss_dssp HHHTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3456789999999999999999999887755
No 86
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.61 E-value=4.8e-08 Score=78.86 Aligned_cols=60 Identities=23% Similarity=0.288 Sum_probs=40.7
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCC
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGIL 211 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~ 211 (298)
.++|+++|.+|||||||+|+|++ ........+.+|.+.....+.+... ..+.++||||..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 63 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVS----------NDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH----------SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEEECCCCCCHHHHHHHHhc----------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCCh
Confidence 46899999999999999999984 1112223455566555555544322 258899999953
No 87
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.61 E-value=1.6e-08 Score=81.38 Aligned_cols=100 Identities=18% Similarity=0.117 Sum_probs=67.3
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQ 101 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~ 101 (298)
||+ .+........+..+|.+++|+|+..+.+... ..+.......+.|+++|+||+|+.+... .+...+....
T Consensus 59 ~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 137 (167)
T 1kao_A 59 AGT-EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEE 137 (167)
T ss_dssp CCT-TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred CCc-hhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHH
Confidence 444 3334445567788999999999986532111 1233333335799999999999865322 2222333334
Q ss_pred cCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 102 QNCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
.+.+++.+||+++.|+++++++|.+.+.
T Consensus 138 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 138 WGCPFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp HTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred hCCCEEEecCCCCcCHHHHHHHHHHHHh
Confidence 5778999999999999999999987664
No 88
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.59 E-value=1e-07 Score=89.62 Aligned_cols=101 Identities=21% Similarity=0.319 Sum_probs=66.1
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-CcccH-HHhccCCCCCCcEEEEEecCCCCChh----hHHHHHHHHHc
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPF-SSEFD-QLRNHHPFSSSRRILVLNKMDLASPT----QFKEWITFFDQ 101 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~-~~~~~-~l~~~l~~~~k~~IiVlNK~DL~~~~----~~~~~~~~~~~ 101 (298)
.||| .++.+.+...+..+|++|+|+|++.+. ..... .+..+.....+|+++++||+|+.+.+ ..++..+++..
T Consensus 88 tPGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~ 166 (408)
T 1s0u_A 88 SPGH-ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKG 166 (408)
T ss_dssp CSSH-HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTT
T ss_pred CCCH-HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhh
Confidence 3787 677888888899999999999999764 22222 22111112346899999999998653 23444445432
Q ss_pred ---cCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 102 ---QNCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 102 ---~~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
.+.+++++||+++.|+++|+++|.+.++
T Consensus 167 ~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 167 TIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp STTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 3568999999999999999999987654
No 89
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.59 E-value=5.9e-08 Score=78.36 Aligned_cols=105 Identities=19% Similarity=0.079 Sum_probs=59.7
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--H---HHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--D---QLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITF 98 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~---~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~ 98 (298)
-|......+........+..+|++++|+|+..+.+... . .+.......+.|+++|+||+|+.+... .+.....
T Consensus 53 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 132 (166)
T 3q72_A 53 VYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC 132 (166)
T ss_dssp EEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHH
T ss_pred EEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHH
Confidence 34433335555566677899999999999986532111 1 122221225789999999999975432 2222233
Q ss_pred HHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
....+.+++.+||+++.|++++++.+.+.+.+
T Consensus 133 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 133 AVVFDCKFIETSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp HHHTTCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Confidence 33456789999999999999999999887654
No 90
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.59 E-value=2e-08 Score=82.57 Aligned_cols=101 Identities=17% Similarity=0.035 Sum_probs=69.7
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQ 101 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~ 101 (298)
||+ .+........+..+|.+++|+|+..+..... ..+.......+.|+++|+||+|+.+.. ..++..+..+.
T Consensus 74 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 152 (187)
T 2a9k_A 74 AGQ-EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ 152 (187)
T ss_dssp CCT-TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred CCC-cccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH
Confidence 454 3344455567788999999999986532111 122222222478999999999996532 23344445555
Q ss_pred cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 102 QNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+.+++.+||+++.|+++++++|.+.+.+
T Consensus 153 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 153 WNVNYVETSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp TTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 67789999999999999999999887765
No 91
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.59 E-value=5.9e-08 Score=80.94 Aligned_cols=62 Identities=24% Similarity=0.282 Sum_probs=45.0
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc-CCCEEEEeCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS-HPNIYVLDTPGIL 211 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPGi~ 211 (298)
...++|+++|.+|||||||+|+|++ ........+.+|+|.....+.+.. ...+.++||||..
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 83 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQ----------DHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHH----------CCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhc----------CCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCch
Confidence 4568999999999999999999984 122234567778877666554432 2258899999953
No 92
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.58 E-value=1.6e-08 Score=82.80 Aligned_cols=91 Identities=15% Similarity=0.124 Sum_probs=63.2
Q ss_pred HHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHcc-------C--CCEEEE
Q 022351 39 IADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQ-------N--CPSFGV 109 (298)
Q Consensus 39 i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~-------~--~~vi~i 109 (298)
....+..+|++++|+|+..+...........+...+.|+++|+||+|+.+.. .+.....+... + .+++.+
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 2lkc_A 72 RARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN-PDRVMQELMEYNLVPEEWGGDTIFCKL 150 (178)
T ss_dssp CCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC-HHHHHHHHTTTTCCBTTTTSSEEEEEC
T ss_pred HHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC-HHHHHHHHHhcCcChhHcCCcccEEEE
Confidence 3456889999999999987654443333332223578999999999997642 12222222211 1 368999
Q ss_pred ecCCCcCHHHHHHHHHHHHHh
Q 022351 110 NSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 110 Sa~~~~gi~~L~~~l~~~i~~ 130 (298)
||+++.|+++++++|.+.+..
T Consensus 151 Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 151 SAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp CSSSSHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHhhhh
Confidence 999999999999999887765
No 93
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.58 E-value=8.4e-08 Score=86.68 Aligned_cols=94 Identities=17% Similarity=0.090 Sum_probs=69.1
Q ss_pred HHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCC--CCcEEEEEecCCCCChhh-HHHHHHHHHccCCCEEEEec
Q 022351 35 ATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFS--SSRRILVLNKMDLASPTQ-FKEWITFFDQQNCPSFGVNS 111 (298)
Q Consensus 35 ~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~--~k~~IiVlNK~DL~~~~~-~~~~~~~~~~~~~~vi~iSa 111 (298)
.......++..+|++++|+|+..+....+..+.+.+... +.|+++|+||+|+.+... +.+..+.+ ....+++++||
T Consensus 76 ~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~iSA 154 (301)
T 1wf3_A 76 MDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL-LPEAEPRMLSA 154 (301)
T ss_dssp HHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT-STTSEEEECCT
T ss_pred HHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh-cCcCcEEEEeC
Confidence 345667889999999999999987665555444333323 799999999999986554 44444443 12236899999
Q ss_pred CCCcCHHHHHHHHHHHHH
Q 022351 112 HNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 112 ~~~~gi~~L~~~l~~~i~ 129 (298)
+++.|++++++.+.+.++
T Consensus 155 ~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 155 LDERQVAELKADLLALMP 172 (301)
T ss_dssp TCHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHhcc
Confidence 999999999999876543
No 94
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.57 E-value=5e-08 Score=81.11 Aligned_cols=83 Identities=20% Similarity=0.342 Sum_probs=45.4
Q ss_pred CCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE
Q 022351 113 NKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY 192 (298)
Q Consensus 113 ~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~ 192 (298)
....+..+.+.+.+.+..... ......++|+++|.+|||||||+|+|.+. ......++..|++|.+.
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~~---~~~~~~~~i~vvG~~g~GKSsll~~l~~~---------~~~~~~~~~~~~~~~~~- 88 (193)
T 2ged_A 22 NKRKISQWREWIDEKLGGGSG---GGGSYQPSIIIAGPQNSGKTSLLTLLTTD---------SVRPTVVSQEPLSAADY- 88 (193)
T ss_dssp TTTBCHHHHHHHHHHC-----------CCCCEEEEECCTTSSHHHHHHHHHHS---------SCC------------CC-
T ss_pred HHHHHHHHHHHHHHHHHhhcC---CCCCCCCEEEEECCCCCCHHHHHHHHhcC---------CCCcccccCCCceeeee-
Confidence 344566677666655543211 12245689999999999999999999841 11122233445554432
Q ss_pred EEEEccCCCEEEEeCCCCCCC
Q 022351 193 SLKIASHPNIYVLDTPGILPP 213 (298)
Q Consensus 193 ~~~~~~~~~~~liDTPGi~~~ 213 (298)
....+.++||||....
T Consensus 89 -----~~~~~~l~Dt~G~~~~ 104 (193)
T 2ged_A 89 -----DGSGVTLVDFPGHVKL 104 (193)
T ss_dssp -----CCTTCSEEEETTCCBS
T ss_pred -----cCCeEEEEECCCCchH
Confidence 2346889999998654
No 95
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.57 E-value=7.4e-08 Score=78.70 Aligned_cols=61 Identities=20% Similarity=0.214 Sum_probs=39.6
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC-CCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH-PNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~-~~~~liDTPGi~~ 212 (298)
...++|+++|.+|||||||+|+|++ .. ......|++|.+.. .+.+.+. ..+.++||||...
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 70 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD-----------NT-FSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS-----------CC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc-----------CC-CCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchh
Confidence 4568999999999999999999983 11 22334455554443 3333221 2488999999543
No 96
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.57 E-value=7e-08 Score=80.11 Aligned_cols=99 Identities=23% Similarity=0.207 Sum_probs=65.7
Q ss_pred hhhHHHHH-HHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHH
Q 022351 29 GPHMAAAT-RAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFD 100 (298)
Q Consensus 29 pghm~~~~-~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~ 100 (298)
||+ .+.. ......+..+|++|+|+|+..+.+... ..+...+...+.|+++|+||+|+.+... .+...++..
T Consensus 77 ~G~-~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~ 155 (189)
T 1z06_A 77 AGQ-ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD 155 (189)
T ss_dssp CCS-HHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred CCc-hhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHH
Confidence 555 4444 456677899999999999986432111 2233333345799999999999965321 222223333
Q ss_pred ccCCCEEEEecCCC---cCHHHHHHHHHHHH
Q 022351 101 QQNCPSFGVNSHNK---DNVKEFLKFLQAHV 128 (298)
Q Consensus 101 ~~~~~vi~iSa~~~---~gi~~L~~~l~~~i 128 (298)
..+++++.+||+++ .|++++++.|.+.+
T Consensus 156 ~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 156 THSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp HTTCCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred HcCCEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 45778999999999 99999998886554
No 97
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.57 E-value=8.8e-08 Score=90.09 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=72.8
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-CcccHH-HhccCCCCCCcEEEEEecCCCCChhh----HHHHHHHHH
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPF-SSEFDQ-LRNHHPFSSSRRILVLNKMDLASPTQ----FKEWITFFD 100 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~-~~~~~~-l~~~l~~~~k~~IiVlNK~DL~~~~~----~~~~~~~~~ 100 (298)
..||| .++...+...+..+|++|+|+|++.+. .....+ +..+.....+|+++|+||+|+.+.+. .+++.+++.
T Consensus 89 DtPGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~ 167 (410)
T 1kk1_A 89 DAPGH-EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIE 167 (410)
T ss_dssp ECSSH-HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred ECCCh-HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHH
Confidence 34787 677888888899999999999999764 222222 21111113468899999999987643 233444443
Q ss_pred c---cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 101 Q---QNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 101 ~---~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
. .+.+++++||+++.|+++|+++|.+.++.
T Consensus 168 ~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 168 GTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred hcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 2 35689999999999999999999876543
No 98
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.57 E-value=7.8e-08 Score=81.04 Aligned_cols=100 Identities=13% Similarity=0.041 Sum_probs=69.6
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--H---HHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--D---QLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQ 101 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~---~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~ 101 (298)
||+ .+........+..+|++|+|+|+..+.+... . .+.... ..+.|+++|+||+|+.+.. ..++..+....
T Consensus 86 ~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 163 (201)
T 2hup_A 86 AGQ-ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEH 163 (201)
T ss_dssp TTC-GGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCc-HhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHH
Confidence 454 4555566778999999999999986532111 1 122211 2568999999999997531 12333344445
Q ss_pred cCC-CEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 102 QNC-PSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 102 ~~~-~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.++ +++.+||+++.|+++++++|.+.+.+
T Consensus 164 ~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 164 YDILCAIETSAKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp TTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 677 88999999999999999999887765
No 99
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.57 E-value=3e-08 Score=82.47 Aligned_cols=101 Identities=14% Similarity=0.068 Sum_probs=68.7
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HH-HhccCCCCCCcEEEEEecCCCCCh-hhHHHHHHHHHccCCC
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQ-LRNHHPFSSSRRILVLNKMDLASP-TQFKEWITFFDQQNCP 105 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~-l~~~l~~~~k~~IiVlNK~DL~~~-~~~~~~~~~~~~~~~~ 105 (298)
||+ .+........+..+|++++|+|+..+.+... .. +..+....+.|+++|+||+|+... ...++..++++..+.+
T Consensus 101 ~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~ 179 (208)
T 3clv_A 101 AGQ-ERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLL 179 (208)
T ss_dssp TTG-GGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCE
T ss_pred CCc-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHHcCCc
Confidence 554 3444456677899999999999987633221 11 122211145999999999994321 2234455555566788
Q ss_pred EEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 106 SFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 106 vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
++.+||+++.|+++++++|.+.+.+
T Consensus 180 ~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 180 FIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999877654
No 100
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.57 E-value=5.4e-08 Score=80.09 Aligned_cols=100 Identities=11% Similarity=0.017 Sum_probs=58.7
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-H----HHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-D----QLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQ 101 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~----~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~ 101 (298)
||+ .+........+..+|++++|+|+..+.+... . .+... ...+.|+++|+||+|+.+.. ..+...++.+.
T Consensus 65 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 142 (183)
T 2fu5_C 65 AGQ-ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLALD 142 (183)
T ss_dssp ----------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHH
T ss_pred CCC-hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHHHH
Confidence 554 4555555677899999999999987532111 1 11111 12478999999999997532 12233333344
Q ss_pred cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 102 QNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+++++.+||+++.|++++++.|.+.+.+
T Consensus 143 ~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 143 YGIKFMETSAKANINVENAFFTLARDIKA 171 (183)
T ss_dssp HTCEEEECCC---CCHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999877655
No 101
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.57 E-value=3.2e-08 Score=81.58 Aligned_cols=101 Identities=19% Similarity=0.099 Sum_probs=67.2
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhhH-HHHHHHHHcc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQF-KEWITFFDQQ 102 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~~-~~~~~~~~~~ 102 (298)
||+ .+........+..+|.+++|+|+..+.+... ..+.......+.|+++|+||+|+.+.... +...+.....
T Consensus 60 ~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~ 138 (189)
T 4dsu_A 60 AGQ-EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSY 138 (189)
T ss_dssp CCC----CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHH
T ss_pred CCc-HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHc
Confidence 444 4444455567788999999999986532111 12223333357999999999999754322 2222233345
Q ss_pred CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 103 NCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 103 ~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+.+++.+||+++.|+++++++|.+.+.+
T Consensus 139 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 139 GIPFIETSAKTRQGVDDAFYTLVREIRK 166 (189)
T ss_dssp TCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999887764
No 102
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.57 E-value=9.3e-08 Score=77.14 Aligned_cols=61 Identities=21% Similarity=0.196 Sum_probs=41.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc-CCCEEEEeCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS-HPNIYVLDTPGIL 211 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPGi~ 211 (298)
..++|+++|.+|||||||+|+|++ ........+..|++.....+.+.. ...+.++||||..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 66 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK----------GQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH----------SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc----------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 457999999999999999999984 111122334556655554444432 2258899999954
No 103
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.56 E-value=1.1e-07 Score=78.90 Aligned_cols=101 Identities=17% Similarity=0.106 Sum_probs=63.1
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh-hHHHHHHHHHcc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT-QFKEWITFFDQQ 102 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~-~~~~~~~~~~~~ 102 (298)
||+ .+........+..+|++++|+|+.++.+..+ ..+..+....+.|+++|+||+|+.+.. ..+...+..+..
T Consensus 77 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 155 (190)
T 3con_A 77 AGQ-EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSY 155 (190)
T ss_dssp CC------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHH
T ss_pred CCh-HHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHc
Confidence 454 5555666678999999999999986532111 112222222478999999999997532 222333333445
Q ss_pred CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 103 NCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 103 ~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+++++.+||+++.|+++++++|.+.+.+
T Consensus 156 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 156 GIPFIETSAKTRQGVEDAFYTLVREIRQ 183 (190)
T ss_dssp TCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999887765
No 104
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.56 E-value=2.9e-08 Score=83.78 Aligned_cols=101 Identities=16% Similarity=0.092 Sum_probs=67.3
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--H---HHhccCCCCCCcEEEEEecCCCCChhh-HHHHHHHHHcc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--D---QLRNHHPFSSSRRILVLNKMDLASPTQ-FKEWITFFDQQ 102 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~---~l~~~l~~~~k~~IiVlNK~DL~~~~~-~~~~~~~~~~~ 102 (298)
||+ .+........+..+|++++|+|+..+.+... . .+.... ..+.|+++|+||+|+..... .+...++....
T Consensus 77 ~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 154 (213)
T 3cph_A 77 AGQ-ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAKEL 154 (213)
T ss_dssp TTG-GGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHHHH
T ss_pred CCc-HHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHHHc
Confidence 554 3344445577899999999999986532111 1 112211 23689999999999953321 12222233345
Q ss_pred CCCEEEEecCCCcCHHHHHHHHHHHHHhh
Q 022351 103 NCPSFGVNSHNKDNVKEFLKFLQAHVRNL 131 (298)
Q Consensus 103 ~~~vi~iSa~~~~gi~~L~~~l~~~i~~~ 131 (298)
+++++.+||+++.|+++++++|.+.+.+.
T Consensus 155 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 155 GIPFIESSAKNDDNVNEIFFTLAKLIQEK 183 (213)
T ss_dssp TCCEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 67899999999999999999998877653
No 105
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.56 E-value=5.1e-08 Score=88.20 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=44.6
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEE--EccCCCEEEEeCCCCC
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLK--IASHPNIYVLDTPGIL 211 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~--~~~~~~~~liDTPGi~ 211 (298)
.++|+++|.||||||||+|++++ +....++..+|+|.+..... +.+...+.++||||..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~-----------~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFS-----------NYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHS-----------CCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh-----------CCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence 57899999999999999999983 33344566788888776433 3234468899999964
No 106
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.56 E-value=1.7e-08 Score=92.89 Aligned_cols=57 Identities=23% Similarity=0.315 Sum_probs=44.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~ 212 (298)
+|+++|.||||||||||+|.. ....++.+|++|..... +.+.....+.|+||||+..
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~------------~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~ 218 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSS------------AKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE 218 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEE------------ECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHc------------CCCccccCCccccCceEEEEEeCCCceEEEecCCCCcc
Confidence 689999999999999999982 23467889999987663 3344335799999999754
No 107
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.56 E-value=3.6e-08 Score=82.68 Aligned_cols=105 Identities=17% Similarity=0.071 Sum_probs=61.8
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HH----HhccCC--CCCCcEEEEEecCCCCC-hhh--HHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQ----LRNHHP--FSSSRRILVLNKMDLAS-PTQ--FKEW 95 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~----l~~~l~--~~~k~~IiVlNK~DL~~-~~~--~~~~ 95 (298)
-|..++..+........+..+|++|+|+|+..+.+... .. +..... ..+.|+++|+||+|+.+ ... .+..
T Consensus 77 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~ 156 (208)
T 2yc2_C 77 LLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMA 156 (208)
T ss_dssp EEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHH
T ss_pred EEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHH
Confidence 34443335666667788999999999999987532111 11 111111 14789999999999976 221 2334
Q ss_pred HHHHHccCCCEEEEecCC-CcCHHHHHHHHHHHHHh
Q 022351 96 ITFFDQQNCPSFGVNSHN-KDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 96 ~~~~~~~~~~vi~iSa~~-~~gi~~L~~~l~~~i~~ 130 (298)
.++.+..+.+++.+||++ +.|+++++++|.+.+.+
T Consensus 157 ~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 157 QDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp HHHHHHTTCEEEECCC-------CHHHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence 444445677899999999 99999999998876654
No 108
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.56 E-value=7.3e-08 Score=77.91 Aligned_cols=59 Identities=22% Similarity=0.246 Sum_probs=34.9
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC-CCEEEEeCCCCCC
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH-PNIYVLDTPGILP 212 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~-~~~~liDTPGi~~ 212 (298)
.++|+++|.+|||||||+|+|++ .+ ......|.++.+.. .+.+... -.+.++||||...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 64 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE-----------DK-FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH-----------CC-CCC-------CCEEEEEEESSSCEEEEEEECCTTGGG
T ss_pred ceEEEEECcCCCCHHHHHHHHHh-----------CC-CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChh
Confidence 47899999999999999999984 11 11223333343333 2322221 1478999999643
No 109
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.55 E-value=2.1e-08 Score=84.41 Aligned_cols=100 Identities=12% Similarity=0.095 Sum_probs=63.1
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--cHHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHHc
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE--FDQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFDQ 101 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~--~~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~ 101 (298)
|..+...+.......++..+|.+++|+|+..+.+.. ...+..++. ..+.|+++|+||+|+......++..+.+..
T Consensus 74 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~ 153 (198)
T 1f6b_A 74 FDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 153 (198)
T ss_dssp EEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTC
T ss_pred EECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCc
Confidence 443333444444556788999999999998753221 112222222 257899999999999753223333333321
Q ss_pred -----------------cCCCEEEEecCCCcCHHHHHHHHHH
Q 022351 102 -----------------QNCPSFGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 102 -----------------~~~~vi~iSa~~~~gi~~L~~~l~~ 126 (298)
.+.+++.+||+++.|+++++++|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 154 YGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp TTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred ccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence 2336899999999999999998864
No 110
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.55 E-value=4.1e-08 Score=81.99 Aligned_cols=100 Identities=14% Similarity=0.059 Sum_probs=67.1
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQ 101 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~ 101 (298)
||+ .+........+..+|++|+|+|+..+.+..+ ..+... ...+.|+++|+||+|+.+... .+...++.+.
T Consensus 83 ~G~-~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~ 160 (192)
T 2il1_A 83 AGQ-ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQQ 160 (192)
T ss_dssp CCS-GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT
T ss_pred CCc-HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHh
Confidence 443 4445556677889999999999987543222 112222 124789999999999965321 2222333333
Q ss_pred -cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 102 -QNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 102 -~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+.+++.+||+++.|++++++.|.+.+.+
T Consensus 161 ~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 161 ITGMRFCEASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp STTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 26688999999999999999999876643
No 111
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.55 E-value=1.1e-07 Score=77.83 Aligned_cols=62 Identities=21% Similarity=0.193 Sum_probs=39.0
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccC-CCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASH-PNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~-~~~~liDTPGi~~ 212 (298)
...++|+++|.+|||||||+|+|++ .........|.++.+... +.+... ..+.++||||...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~-----------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 72 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKD-----------GAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER 72 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH-----------SCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh-----------CCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 4568999999999999999999984 222222333444444332 223221 1588999999643
No 112
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.55 E-value=8.7e-08 Score=78.20 Aligned_cols=61 Identities=28% Similarity=0.284 Sum_probs=37.3
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGI 210 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi 210 (298)
...++|+++|.+|||||||+|+|++ ........+..|.+.....+.+... -.+.++||||.
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 66 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVT----------NKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHH----------SCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCC
T ss_pred cceeEEEEECCCCCCHHHHHHHHHc----------CCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCc
Confidence 3468999999999999999999984 1111222233333332333333321 25889999995
No 113
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.53 E-value=4.4e-08 Score=79.20 Aligned_cols=101 Identities=17% Similarity=0.103 Sum_probs=67.8
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HH----HhccCCCCCCcEEEEEecCCCCChh-hHHHHHHHHHc
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQ----LRNHHPFSSSRRILVLNKMDLASPT-QFKEWITFFDQ 101 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~----l~~~l~~~~k~~IiVlNK~DL~~~~-~~~~~~~~~~~ 101 (298)
.||+ .+........+..+|++++|+|+..+.+... .. +.... ..+.|+++|+||+|+.... ..+...+..+.
T Consensus 59 ~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 136 (170)
T 1g16_A 59 TAGQ-ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAKE 136 (170)
T ss_dssp CTTG-GGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHHH
T ss_pred CCCC-hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHHH
Confidence 3554 3344445567889999999999986532111 11 11211 2478999999999995432 12222333334
Q ss_pred cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 102 QNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+++++.+||+++.|++++++.+.+.+.+
T Consensus 137 ~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 137 LGIPFIESSAKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp HTCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999887765
No 114
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.53 E-value=7.5e-08 Score=91.85 Aligned_cols=93 Identities=12% Similarity=0.152 Sum_probs=70.5
Q ss_pred HHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHc-----cCCCEEEEe
Q 022351 38 AIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQ-----QNCPSFGVN 110 (298)
Q Consensus 38 ~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~-----~~~~vi~iS 110 (298)
....++..+|++|+|+|+..+....+..+..++...++|+++|+||+|+.+.. ..++..+.+++ .+.+++++|
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 349 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMS 349 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECC
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEc
Confidence 34457888999999999998877776666555444689999999999998532 22333333322 145899999
Q ss_pred cCCCcCHHHHHHHHHHHHHh
Q 022351 111 SHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 111 a~~~~gi~~L~~~l~~~i~~ 130 (298)
|+++.|++++++.+.+.+..
T Consensus 350 A~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 350 ALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp TTTCTTGGGHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999888765
No 115
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.53 E-value=5.9e-08 Score=81.29 Aligned_cols=101 Identities=17% Similarity=0.035 Sum_probs=68.9
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQ 101 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~ 101 (298)
||+ .+........+..+|.+++|+|+..+.+... ..+.......+.|+++|+||+|+.+.. ..+...++...
T Consensus 70 ~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 148 (206)
T 2bov_A 70 AGQ-EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ 148 (206)
T ss_dssp CCT-TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCh-hhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHH
Confidence 444 3344455567788999999999986532111 122233223479999999999997532 22334444444
Q ss_pred cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 102 QNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+.+++.+||+++.|+++++++|.+.+.+
T Consensus 149 ~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 149 WNVNYVETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp HTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred hCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999877755
No 116
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.53 E-value=3.6e-08 Score=80.59 Aligned_cols=60 Identities=25% Similarity=0.372 Sum_probs=40.9
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~ 212 (298)
....+|+++|.+|||||||+|+|.+ . .......|++|.+... +.+. +..+.++||||...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~-----------~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~ 67 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH-----------S-KVTEQEAGGITQHIGAYQVTVN-DKKITFLDTPGHEA 67 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT-----------T-CSSCSSCCSSSTTCCCCEEEET-TEEEEESCCCSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC-----------C-ccccCCCCceeEeeeEEEEEeC-CceEEEEECCCCHH
Confidence 4567999999999999999999983 1 1223344555544432 3232 33588999999754
No 117
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.53 E-value=1.1e-07 Score=95.31 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=29.7
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCe
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGE 187 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~ 187 (298)
..+++|+++|.+|+|||||+|+|++ .....++..|+|
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg-----------~~~~~v~~~p~T 103 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIG-----------ENLLPSDVNPCT 103 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHT-----------SSCSCCCCCTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC-----------CCCCCCCCCCCc
Confidence 3578999999999999999999993 344556666666
No 118
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.53 E-value=1.4e-07 Score=77.02 Aligned_cols=101 Identities=16% Similarity=0.037 Sum_probs=62.1
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccC---CCCCCcEEEEEecCCCCChh---hHHHHHH
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHH---PFSSSRRILVLNKMDLASPT---QFKEWIT 97 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l---~~~~k~~IiVlNK~DL~~~~---~~~~~~~ 97 (298)
||+ .+........+..+|++++|+|+..+.+... ..+.... ...+.|+++|+||+|+.+.. ..+...+
T Consensus 66 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~ 144 (182)
T 1ky3_A 66 AGQ-ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQE 144 (182)
T ss_dssp C-----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHH
T ss_pred CCC-hHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHH
Confidence 454 5555666678999999999999986532111 1121111 12578999999999996432 1222223
Q ss_pred HHH-ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 98 FFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 98 ~~~-~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+.. ..+.+++.+||+++.|+++++++|.+.+.+
T Consensus 145 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 145 LAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp HHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 332 345689999999999999999999876654
No 119
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.52 E-value=2e-07 Score=75.69 Aligned_cols=91 Identities=22% Similarity=0.113 Sum_probs=60.9
Q ss_pred HHhcCCCCeEEEEEeCCCCCCccc-HH----HhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHccCCCEEEEecC
Q 022351 40 ADRMPLVDIILEVRDARIPFSSEF-DQ----LRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQNCPSFGVNSH 112 (298)
Q Consensus 40 ~~~l~~aDlVl~VvDa~~p~~~~~-~~----l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iSa~ 112 (298)
...+..+|.+++|+|+..+.+... .. +.......+.|+++|+||+|+.+... .+....+....+.+++.+||+
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 151 (175)
T 2nzj_A 72 ESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSAT 151 (175)
T ss_dssp HHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTT
T ss_pred HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecC
Confidence 456888999999999986532111 11 22211124789999999999975421 222222333446789999999
Q ss_pred CCcCHHHHHHHHHHHHHh
Q 022351 113 NKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 113 ~~~gi~~L~~~l~~~i~~ 130 (298)
++.|+++++++|.+.+..
T Consensus 152 ~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 152 LQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999887765
No 120
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.52 E-value=3.4e-08 Score=79.61 Aligned_cols=91 Identities=20% Similarity=0.064 Sum_probs=61.5
Q ss_pred HHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHcc-CCCEEEE
Q 022351 38 AIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQ-NCPSFGV 109 (298)
Q Consensus 38 ~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~-~~~vi~i 109 (298)
.....+..+|.+++|+|+..+.+... ..+.......+.|+++|+||+|+.+... .+...+..+.. +.+++.+
T Consensus 67 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (167)
T 1c1y_A 67 MRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLES 146 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEEC
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEe
Confidence 34456677999999999986532111 1122222235799999999999965321 22233333333 6789999
Q ss_pred ecCCCcCHHHHHHHHHHHH
Q 022351 110 NSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 110 Sa~~~~gi~~L~~~l~~~i 128 (298)
||+++.|+++++++|.+.+
T Consensus 147 Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 147 SAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999987654
No 121
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.52 E-value=4e-08 Score=91.21 Aligned_cols=59 Identities=29% Similarity=0.439 Sum_probs=42.1
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEc--------------------cCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIA--------------------SHP 200 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~--------------------~~~ 200 (298)
++++++|.||||||||+|+|.+. ...++++|++|.+... +.+. ...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~------------~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~ 69 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA------------NALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPT 69 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH------------HTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC------------CCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCc
Confidence 46899999999999999999841 2456677777765432 2121 122
Q ss_pred CEEEEeCCCCCCC
Q 022351 201 NIYVLDTPGILPP 213 (298)
Q Consensus 201 ~~~liDTPGi~~~ 213 (298)
.+.++||||+...
T Consensus 70 ~i~lvDtpGl~~~ 82 (368)
T 2dby_A 70 HVEFVDIAGLVKG 82 (368)
T ss_dssp EEEEEECCSCCCC
T ss_pred eEEEEECCCcccc
Confidence 5899999999864
No 122
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.52 E-value=7.7e-08 Score=82.05 Aligned_cols=63 Identities=14% Similarity=0.093 Sum_probs=46.7
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~~ 212 (298)
...++|+++|.+|||||||+|+++. ........+.+|+|.....+.+... ..+.++||||...
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 76 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLT----------GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHH----------HHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHc----------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHH
Confidence 4568999999999999999999762 1234556788888887766555332 2588999999543
No 123
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.52 E-value=1.2e-07 Score=76.50 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
..++|+++|.+|||||||+|+|.+
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHc
Confidence 468999999999999999999984
No 124
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.51 E-value=8.6e-08 Score=78.96 Aligned_cols=100 Identities=17% Similarity=0.025 Sum_probs=70.0
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-----HHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-----QLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQ 101 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-----~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~ 101 (298)
||+ .+........+..+|++++|+|+..+.+.... .+... ...+.|+++|+||+|+.+.. ...+..+....
T Consensus 67 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 144 (186)
T 2bme_A 67 AGQ-ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARML-ASQNIVIILCGNKKDLDADREVTFLEASRFAQE 144 (186)
T ss_dssp CCS-GGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred CCc-HHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence 444 44556677889999999999999875332111 11221 13578999999999996432 12333444445
Q ss_pred cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 102 QNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+.+++.+||+++.|++++++.+.+.+.+
T Consensus 145 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 145 NELMFLETSALTGENVEEAFVQCARKILN 173 (186)
T ss_dssp TTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 67789999999999999999998877654
No 125
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.51 E-value=1.4e-07 Score=76.79 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=38.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC-CCEEEEeCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH-PNIYVLDTPGIL 211 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~-~~~~liDTPGi~ 211 (298)
..++|+++|.+|||||||+|+|+. .. ......|.++.+.. .+.+... ..+.++||||..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 74 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMY-----------DS-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH-----------SC-CCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHc-----------CC-CCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcH
Confidence 358999999999999999999983 11 11222344444433 2333221 258899999954
No 126
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.51 E-value=2.1e-07 Score=89.44 Aligned_cols=90 Identities=16% Similarity=0.223 Sum_probs=66.2
Q ss_pred HHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCcC
Q 022351 37 RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDN 116 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~g 116 (298)
+.....+..+|++|+|+|+..+.+..+..+.+.+ .++|+++|+||+|+.+....++..+++ ..+.+++.+||+++.|
T Consensus 315 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~~~~~~~~~-~~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 315 ERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEG 391 (482)
T ss_dssp HHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCC
T ss_pred HHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccCHHHHHHHh-cCCCcEEEEECCCCCC
Confidence 4445677889999999999887665554454443 478999999999997542233333333 3345899999999999
Q ss_pred HHHHHHHHHHHHH
Q 022351 117 VKEFLKFLQAHVR 129 (298)
Q Consensus 117 i~~L~~~l~~~i~ 129 (298)
+++|++.|.+.+.
T Consensus 392 i~eL~~~l~~~~~ 404 (482)
T 1xzp_A 392 LEKLEESIYRETQ 404 (482)
T ss_dssp HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987643
No 127
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.51 E-value=1.7e-07 Score=77.98 Aligned_cols=63 Identities=17% Similarity=0.203 Sum_probs=40.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc-CCCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS-HPNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPGi~~ 212 (298)
...++|+++|.+|||||||+|+|++. .......+..|++.....+.+.. ...+.++||||...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRN----------EFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHS----------CCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCT
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC----------CCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchh
Confidence 34689999999999999999999841 11111223334444333333321 22478999999855
No 128
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.51 E-value=1.6e-07 Score=76.45 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=40.0
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc-CCCEEEEeCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS-HPNIYVLDTPGIL 211 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPGi~ 211 (298)
...++|+++|.+|||||||+|+|.+ ........+..|.+.....+.+.. ...+.++||||..
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTE----------KKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH----------SCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHc----------CCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCCh
Confidence 3468999999999999999999984 111122233344444444444432 1257899999953
No 129
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.50 E-value=2.4e-08 Score=83.50 Aligned_cols=97 Identities=20% Similarity=0.178 Sum_probs=64.1
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHHc--
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFDQ-- 101 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~-- 101 (298)
||+ .+........+..+|++++|+|+..+.+... ..+..++. ..+.|+++|+||+|+......++..+.+..
T Consensus 75 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~ 153 (190)
T 1m2o_B 75 GGH-IQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN 153 (190)
T ss_dssp CCS-GGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSS
T ss_pred CCC-HHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCcc
Confidence 444 3333444567899999999999987633211 11222221 257899999999999763333444444321
Q ss_pred ----------cCCCEEEEecCCCcCHHHHHHHHHH
Q 022351 102 ----------QNCPSFGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 102 ----------~~~~vi~iSa~~~~gi~~L~~~l~~ 126 (298)
.+.+++.+||+++.|+++++++|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 154 TTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp CCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred ccccccccccceEEEEEeECCcCCCHHHHHHHHHh
Confidence 2346899999999999999998853
No 130
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.50 E-value=2.8e-08 Score=81.47 Aligned_cols=101 Identities=14% Similarity=0.016 Sum_probs=68.0
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHH-hccC--CCCCCcEEEEEecCCCCChhh--HHHHHHHHHc
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQL-RNHH--PFSSSRRILVLNKMDLASPTQ--FKEWITFFDQ 101 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l-~~~l--~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~ 101 (298)
.||+ .+........+..+|++++|+|+..+.+... ..+ ..+. ...+.|+++|+||+|+.+... .+...++.+.
T Consensus 68 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~ 146 (181)
T 2efe_B 68 TAGQ-ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQE 146 (181)
T ss_dssp CCCS-GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred CCCC-hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHH
Confidence 3555 3444455677899999999999986533111 111 1111 124789999999999975422 2344444445
Q ss_pred cCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 102 QNCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
.+++++.+||+++.|+++++++|.+.+.
T Consensus 147 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 147 NGLFFMETSAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp TTCEEEECCSSSCTTHHHHHHHHHHTCC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6778999999999999999999876543
No 131
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.50 E-value=2e-07 Score=77.28 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=41.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc-CCCEEEEeCCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS-HPNIYVLDTPGILP 212 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPGi~~ 212 (298)
..++|+++|.+|||||||+|+|++ ........+..|++.....+.... ...+.++||||...
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 83 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYAD----------DSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH----------SCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc----------CCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHH
Confidence 358999999999999999999984 111122334445555444443332 22588999999654
No 132
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.50 E-value=1.4e-07 Score=79.44 Aligned_cols=61 Identities=21% Similarity=0.236 Sum_probs=38.5
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC-CCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH-PNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~-~~~~liDTPGi~~ 212 (298)
...++|+++|.+|||||||+|+|++ .+ ......|.++.+.. .+.+... ..+.|+||||...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVE-----------DK-FNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH-----------CC-CCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh-----------CC-CCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 3468999999999999999999983 11 12223343443333 3333221 2588999999643
No 133
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.50 E-value=1.4e-07 Score=79.12 Aligned_cols=63 Identities=21% Similarity=0.251 Sum_probs=36.5
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~~ 212 (298)
...++|+++|.+|||||||+|+|++ ........+.+|++.....+.+... ..+.|+||||...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 89 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCK----------NEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHH----------CCCC----------CEEEEEEETTEEEEEEEEECTTCTT
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh----------CCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcc
Confidence 4568999999999999999999984 1112233444555544444444322 2488999999643
No 134
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.49 E-value=1.8e-07 Score=75.68 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++|+++|.+|||||||+|+|++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHc
Confidence 3468999999999999999999984
No 135
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.49 E-value=1.4e-07 Score=76.31 Aligned_cols=58 Identities=19% Similarity=0.303 Sum_probs=38.6
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGIL 211 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~ 211 (298)
.+.++|+++|.+|||||||+|+|.. +......+..|.+. ..+.+. ...+.++||||..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~-----------~~~~~~~~t~~~~~--~~~~~~-~~~~~~~Dt~G~~ 62 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV-----------GEVVTTIPTIGFNV--ETVTYK-NLKFQVWDLGGLT 62 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH-----------SSCCCCCCCSSEEE--EEEEET-TEEEEEEEECCCG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc-----------CCCCCcCCcCccce--EEEEEC-CEEEEEEECCCCh
Confidence 4568999999999999999999983 22222333333332 223332 3368899999974
No 136
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.49 E-value=2.4e-08 Score=81.65 Aligned_cols=95 Identities=23% Similarity=0.083 Sum_probs=64.5
Q ss_pred HHHHHhcCCCCeEEEEEeCCCCCCccc--H---HHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHccCCCEEEE
Q 022351 37 RAIADRMPLVDIILEVRDARIPFSSEF--D---QLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQNCPSFGV 109 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~--~---~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~i 109 (298)
......+..+|.+++|+|+..+.+... . .+.......+.|+++|+||+|+.+... .+....+....+.+++.+
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 151 (181)
T 2fn4_A 72 AMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEA 151 (181)
T ss_dssp CCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEe
Confidence 334456778999999999986422111 1 121222235789999999999975322 122223333457789999
Q ss_pred ecCCCcCHHHHHHHHHHHHHhh
Q 022351 110 NSHNKDNVKEFLKFLQAHVRNL 131 (298)
Q Consensus 110 Sa~~~~gi~~L~~~l~~~i~~~ 131 (298)
||+++.|+++++++|.+.+.+.
T Consensus 152 Sa~~~~gv~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 152 SAKLRLNVDEAFEQLVRAVRKY 173 (181)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999998887653
No 137
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.49 E-value=1.9e-07 Score=74.92 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCchHHHHHHHhh
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.++|+++|.+|||||||+|+|.+
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 47899999999999999999984
No 138
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.88 E-value=1.5e-08 Score=85.31 Aligned_cols=101 Identities=15% Similarity=0.088 Sum_probs=66.0
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCCC--CCCcEEEEEecCCCCChhhH---------
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHPF--SSSRRILVLNKMDLASPTQF--------- 92 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~~--~~k~~IiVlNK~DL~~~~~~--------- 92 (298)
-|..+...+........+..+|++++|+|+..+.+..+. .+...+.. .+.|+++|+||+|+.+....
T Consensus 82 i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~ 161 (204)
T 3th5_A 82 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 161 (204)
Confidence 444444455556666788999999999999876433221 22222222 27899999999999754211
Q ss_pred -----HHHHHHHHccCC-CEEEEecCCCcCHHHHHHHHHH
Q 022351 93 -----KEWITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 93 -----~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~ 126 (298)
+...++.+..+. +++.+||+++.|++++++.|.+
T Consensus 162 ~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 162 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 201 (204)
Confidence 111122223344 7889999999999999988764
No 139
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.49 E-value=2.9e-07 Score=87.46 Aligned_cols=94 Identities=15% Similarity=0.138 Sum_probs=63.6
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-------cccHHHhccCCCCCCc-EEEEEecCCCCCh----hhH---
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFS-------SEFDQLRNHHPFSSSR-RILVLNKMDLASP----TQF--- 92 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~-------~~~~~l~~~l~~~~k~-~IiVlNK~DL~~~----~~~--- 92 (298)
-||| .++.+.+...+..+|++|+|+|++.+.. ....+....+...+.| +++|+||+|+... +..
T Consensus 102 TPGh-~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i 180 (439)
T 3j2k_7 102 APGH-KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEEC 180 (439)
T ss_pred CCCh-HHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHH
Confidence 3677 7788889999999999999999998653 1222222222234666 8999999999642 112
Q ss_pred -HHHHHHHHccC------CCEEEEecCCCcCHHHHHH
Q 022351 93 -KEWITFFDQQN------CPSFGVNSHNKDNVKEFLK 122 (298)
Q Consensus 93 -~~~~~~~~~~~------~~vi~iSa~~~~gi~~L~~ 122 (298)
++..++++..+ .+++++||++|.|++++.+
T Consensus 181 ~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 181 KEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 22223333333 4689999999999998544
No 140
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.48 E-value=1.9e-07 Score=77.56 Aligned_cols=60 Identities=22% Similarity=0.235 Sum_probs=39.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeee--EEEEEccC-CCEEEEeCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDI--YSLKIASH-PNIYVLDTPGIL 211 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~--~~~~~~~~-~~~~liDTPGi~ 211 (298)
...++|+++|.+|||||||+|+|++ ........|++|.+. ..+.+... ..+.++||||..
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 76 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFAD------------DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH------------SCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHc------------CCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 3458999999999999999999983 112223334444333 33434322 248899999954
No 141
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.48 E-value=3.5e-07 Score=87.69 Aligned_cols=89 Identities=20% Similarity=0.266 Sum_probs=64.6
Q ss_pred HHHHHhcCCCCeEEEEEeCCCCCCc----ccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHcc-CCCEEEEec
Q 022351 37 RAIADRMPLVDIILEVRDARIPFSS----EFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQ-NCPSFGVNS 111 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p~~~----~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~-~~~vi~iSa 111 (298)
+.....+..+|++++|+|+..+.+. ....+...+ .++|+++|+||+|+.+...... +.+... ..+++.+||
T Consensus 304 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK~Dl~~~~~~~~--~~l~~~~~~~~i~vSA 379 (476)
T 3gee_A 304 RRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANKLDRAANADALI--RAIADGTGTEVIGISA 379 (476)
T ss_dssp ----CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEECTTSCTTTHHHH--HHHHHHHTSCEEECBT
T ss_pred HHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEECcCCCCccchhH--HHHHhcCCCceEEEEE
Confidence 3345678999999999999987665 333444443 3799999999999987654322 222222 357999999
Q ss_pred CCCcCHHHHHHHHHHHHH
Q 022351 112 HNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 112 ~~~~gi~~L~~~l~~~i~ 129 (298)
+++.|+++|+++|.+.+.
T Consensus 380 ktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 380 LNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTBSHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999988776
No 142
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.48 E-value=7.4e-08 Score=81.10 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=68.3
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQ 101 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~ 101 (298)
||+ .+........+..+|++|+|+|+..+.+... ..+.... ..+.|+++|+||+|+.+.. ..+...++...
T Consensus 65 ~G~-~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 142 (206)
T 2bcg_Y 65 AGQ-ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADA 142 (206)
T ss_dssp TTT-TTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred CCh-HHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHH
Confidence 444 3344445567899999999999987532211 1122221 2468999999999997632 12233333345
Q ss_pred cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 102 QNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+++++.+||+++.|+++++++|.+.+.+
T Consensus 143 ~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 143 NKMPFLETSALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp TTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 67789999999999999999999887765
No 143
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.48 E-value=2.2e-07 Score=77.13 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++|+++|.+|||||||+|+|++
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~ 29 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999999999984
No 144
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.48 E-value=1.2e-07 Score=79.56 Aligned_cols=100 Identities=14% Similarity=0.057 Sum_probs=68.0
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-H----HHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-D----QLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQ 101 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~----~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~ 101 (298)
||+ .+........+..+|++|+|+|+..+.+... . .+.... ..+.|+++|+||+|+.+... .+...+....
T Consensus 65 ~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 142 (203)
T 1zbd_A 65 AGL-ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLADH 142 (203)
T ss_dssp CCS-GGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHH
T ss_pred CCc-hhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHHH
Confidence 454 4455566788999999999999986532111 1 111111 24789999999999975321 2222233334
Q ss_pred cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 102 QNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+++++.+||+++.|+++++++|.+.+.+
T Consensus 143 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 143 LGFEFFEASAKDNINVKQTFERLVDVICE 171 (203)
T ss_dssp HTCEEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999998876654
No 145
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.48 E-value=2.1e-07 Score=77.15 Aligned_cols=62 Identities=18% Similarity=0.325 Sum_probs=41.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc-CCCEEEEeCCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS-HPNIYVLDTPGILP 212 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPGi~~ 212 (298)
+.++|+++|.+|||||||+|+|++ ........+..|++.....+.+.. ...+.|+||||...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 76 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTD----------DTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH----------SCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHc----------CCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchh
Confidence 357999999999999999999984 111222334455555544444432 12588999999643
No 146
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.48 E-value=6.2e-08 Score=79.15 Aligned_cols=101 Identities=18% Similarity=0.073 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccC-CCCCCcEEEEEecCCCCChhh--HHHHHHHHHccC
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHH-PFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQN 103 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l-~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~~ 103 (298)
||+ .+........+..+|++++|+|+..+.+.... .+..+. ...+.|+++|+||+|+.+... ...........+
T Consensus 66 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 144 (181)
T 3tw8_B 66 AGQ-ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMG 144 (181)
T ss_dssp TTG-GGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT
T ss_pred CCc-hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcC
Confidence 454 33444455678999999999999875322111 111110 024689999999999865421 223333334457
Q ss_pred CCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 104 CPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 104 ~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+++.+||+++.|++++++++.+.+.+
T Consensus 145 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 145 IQLFETSAKENVNVEEMFNCITELVLR 171 (181)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999887765
No 147
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.48 E-value=2.2e-07 Score=76.64 Aligned_cols=58 Identities=21% Similarity=0.350 Sum_probs=39.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGIL 211 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~ 211 (298)
.+.++|+++|.+|||||||+|+|.+ .......+..|.+.. .+.+ .+..+.++||||..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~-----------~~~~~~~~t~~~~~~--~~~~-~~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG-----------EDVDTISPTLGFNIK--TLEH-RGFKLNIWDVGGQK 73 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT-----------CCCSSCCCCSSEEEE--EEEE-TTEEEEEEEECCSH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc-----------CCCCcccccCccceE--EEEE-CCEEEEEEECCCCH
Confidence 3568999999999999999999983 223333444444322 2323 23468899999973
No 148
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.48 E-value=3.6e-08 Score=79.84 Aligned_cols=101 Identities=11% Similarity=-0.017 Sum_probs=64.2
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhccCC---CCCCcEEEEEecCCCCChh--hHHHHHHHHHc
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRNHHP---FSSSRRILVLNKMDLASPT--QFKEWITFFDQ 101 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~~l~---~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~ 101 (298)
.||+ .+........+..+|.+++|+|+..+.+... ..+...+. ..+.|+++|+||+|+.+.. ..+...+..+.
T Consensus 62 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 140 (170)
T 1z08_A 62 TAGQ-ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAES 140 (170)
T ss_dssp CCCC--------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred CCCc-HhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHH
Confidence 3565 4444555567899999999999986532111 11111111 1468999999999997532 12333334445
Q ss_pred cCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 102 QNCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
.+.+++.+||+++.|+++++++|.+.+.
T Consensus 141 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 141 VGAKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp TTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred cCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 5778999999999999999999987654
No 149
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.47 E-value=1.9e-07 Score=76.83 Aligned_cols=59 Identities=29% Similarity=0.318 Sum_probs=36.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccC-CCEEEEeCCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASH-PNIYVLDTPGILP 212 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~-~~~~liDTPGi~~ 212 (298)
..++|+++|.+|||||||+|+|++ .. .....++++.+... +.+... ..+.++||||...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~-----------~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 64 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQ-----------NH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 64 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH-----------SS--CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh-----------CC--CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHH
Confidence 457999999999999999999984 11 12233334433222 222221 1367899999654
No 150
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.47 E-value=1.8e-07 Score=75.68 Aligned_cols=90 Identities=22% Similarity=0.189 Sum_probs=61.4
Q ss_pred HhcCCCCeEEEEEeCCCCCCccc--HH---HhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHccCCCEEEEecCC
Q 022351 41 DRMPLVDIILEVRDARIPFSSEF--DQ---LRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQQNCPSFGVNSHN 113 (298)
Q Consensus 41 ~~l~~aDlVl~VvDa~~p~~~~~--~~---l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~~~~~vi~iSa~~ 113 (298)
..+..+|++++|+|+..+.+... .. +.......+.|+++|+||+|+.+.. ..+...+..+..+.+++.+||++
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (169)
T 3q85_A 71 HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAAL 150 (169)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTT
T ss_pred hhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCcc
Confidence 34667999999999986432111 11 2222222478999999999996432 12233334445577899999999
Q ss_pred CcCHHHHHHHHHHHHHh
Q 022351 114 KDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 114 ~~gi~~L~~~l~~~i~~ 130 (298)
+.|++++++.+.+.+..
T Consensus 151 ~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 151 HHNTRELFEGAVRQIRL 167 (169)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999877654
No 151
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.47 E-value=2.5e-07 Score=77.47 Aligned_cols=61 Identities=13% Similarity=0.214 Sum_probs=40.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc-CCCEEEEeCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS-HPNIYVLDTPGIL 211 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPGi~ 211 (298)
..++|+++|.+|||||||+|+|++ ........+..|++.....+.+.. ...+.++||||..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYAD----------DSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHT----------CCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhc----------CCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCch
Confidence 457999999999999999999983 111122334445555544444332 2258899999974
No 152
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.47 E-value=1.1e-07 Score=80.06 Aligned_cols=101 Identities=17% Similarity=0.044 Sum_probs=69.0
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HH-Hhcc--CCCCCCcEEEEEecCCCCChhh--HHHHHHHHHcc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQ-LRNH--HPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQ 102 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~-l~~~--l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~ 102 (298)
||+ .+........+..+|++|+|+|+..+.+... .. +..+ ....+.|+++|+||+|+.+... ..+..++....
T Consensus 82 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~ 160 (200)
T 2o52_A 82 AGQ-ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQEN 160 (200)
T ss_dssp TTH-HHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT
T ss_pred CCc-HhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHc
Confidence 454 4555555677899999999999986532211 11 1111 1125789999999999964321 23344444456
Q ss_pred CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 103 NCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 103 ~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+++++.+||+++.|++++++.|.+.+.+
T Consensus 161 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 161 ELMFLETSALTGENVEEAFLKCARTILN 188 (200)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 7789999999999999999998877654
No 153
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.47 E-value=8.3e-08 Score=76.89 Aligned_cols=92 Identities=20% Similarity=0.115 Sum_probs=62.4
Q ss_pred HHHHhcCCCCeEEEEEeCCCCCCccc-H----HHhccCCCCCCcEEEEEecCCCCChhh-HHHHHHHHHccCCCEEEEec
Q 022351 38 AIADRMPLVDIILEVRDARIPFSSEF-D----QLRNHHPFSSSRRILVLNKMDLASPTQ-FKEWITFFDQQNCPSFGVNS 111 (298)
Q Consensus 38 ~i~~~l~~aDlVl~VvDa~~p~~~~~-~----~l~~~l~~~~k~~IiVlNK~DL~~~~~-~~~~~~~~~~~~~~vi~iSa 111 (298)
.....+..+|.+++|+|+..+.+... . .+.......+.|+++|+||+|+.+... .+...+..+..+.+++.+||
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 146 (166)
T 2ce2_X 67 MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSA 146 (166)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECT
T ss_pred HHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecC
Confidence 34456778999999999876432111 1 122221123799999999999976322 22223333345678999999
Q ss_pred CCCcCHHHHHHHHHHHHH
Q 022351 112 HNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 112 ~~~~gi~~L~~~l~~~i~ 129 (298)
+++.|++++++++.+.+.
T Consensus 147 ~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 147 KTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987654
No 154
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.47 E-value=1.5e-07 Score=79.62 Aligned_cols=100 Identities=15% Similarity=0.119 Sum_probs=68.4
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQ 101 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~ 101 (298)
||+ .+........+..+|++++|+|+..+.+... ..+.... ..+.|+++|+||+|+..... .+...++...
T Consensus 83 ~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 160 (201)
T 2ew1_A 83 AGQ-ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSEA 160 (201)
T ss_dssp CCS-GGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHH
T ss_pred CCc-HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHH
Confidence 454 4555566788999999999999986532211 1122221 24689999999999964321 1222233334
Q ss_pred cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 102 QNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+.+++.+||+++.|++++++.+.+.+.+
T Consensus 161 ~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 161 QDMYYLETSAKESDNVEKLFLDLACRLIS 189 (201)
T ss_dssp HTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999998877654
No 155
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.46 E-value=2.4e-07 Score=77.74 Aligned_cols=61 Identities=20% Similarity=0.262 Sum_probs=38.0
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC-CCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH-PNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~-~~~~liDTPGi~~ 212 (298)
...++|+++|.+|||||||+|+|++ .. ......|.++.+.. .+.+... ..+.|+||||...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~-----------~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVN-----------KK-FSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH-----------SC-CCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHc-----------CC-CCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 4568999999999999999999984 11 11122233333333 3333221 2588999999643
No 156
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.46 E-value=2.4e-07 Score=76.25 Aligned_cols=60 Identities=13% Similarity=0.182 Sum_probs=38.1
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC-CCEEEEeCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH-PNIYVLDTPGIL 211 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~-~~~~liDTPGi~ 211 (298)
...++|+++|.+|||||||+|+|++ .. ......|.++.+.. .+.+... ..+.++||||..
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 70 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIE-----------KK-FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH-----------SS-CCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHc-----------CC-CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 3468999999999999999999984 11 11122333343332 3333221 258899999953
No 157
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.46 E-value=7.5e-08 Score=80.15 Aligned_cols=100 Identities=17% Similarity=0.046 Sum_probs=67.0
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-H----HHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-D----QLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQ 101 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~----~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~ 101 (298)
||+ .+........+..+|++++|+|+..+.+..+ . .+.... ..+.|+++|+||+|+.+... .+...++...
T Consensus 78 ~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 155 (191)
T 2a5j_A 78 AGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFARE 155 (191)
T ss_dssp TTG-GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCc-hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHHH
Confidence 454 3444445577889999999999986432211 1 111111 24789999999999964321 2223333334
Q ss_pred cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 102 QNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+.+++.+||+++.|++++++.|.+.+.+
T Consensus 156 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 156 HGLIFMETSAKTACNVEEAFINTAKEIYR 184 (191)
T ss_dssp HTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999998877654
No 158
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.46 E-value=2.7e-07 Score=74.06 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
+.++|+++|.+|||||||+|+|.+
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999984
No 159
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.46 E-value=2.8e-07 Score=76.44 Aligned_cols=61 Identities=21% Similarity=0.250 Sum_probs=38.1
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGI 210 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi 210 (298)
...++|+++|.+|||||||+|+|++ ........+..|++.....+.+... ..+.|+||||.
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 79 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCA----------GRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH----------SSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc----------CCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc
Confidence 3468999999999999999999984 1111112233333333333433321 25889999995
No 160
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.46 E-value=1.8e-07 Score=77.20 Aligned_cols=59 Identities=20% Similarity=0.354 Sum_probs=41.3
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~ 212 (298)
.+.++|+++|.+|||||||+|+|.+ .......+.+|.+.. .+.+ .+..+.++||||...
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~-----------~~~~~~~~t~~~~~~--~~~~-~~~~~~i~Dt~G~~~ 77 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSM-----------NEVVHTSPTIGSNVE--EIVI-NNTRFLMWDIGGQES 77 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHT-----------TSCEEEECCSSSSCE--EEEE-TTEEEEEEEESSSGG
T ss_pred CceeEEEEECCCCCCHHHHHHHHhc-----------CCCCccCCcCceeeE--EEEE-CCEEEEEEECCCCHh
Confidence 4568999999999999999999983 233555666665432 2323 234689999999743
No 161
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.46 E-value=9.7e-08 Score=79.50 Aligned_cols=99 Identities=10% Similarity=0.052 Sum_probs=64.6
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChhh-------------
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPTQ------------- 91 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~~------------- 91 (298)
||+ .+........+..+|++++|+|+..+.+.... .+...+. ..+.|+++|+||+|+.+...
T Consensus 74 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 152 (194)
T 2atx_A 74 AGQ-EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPI 152 (194)
T ss_dssp CCS-SSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCC
T ss_pred CCC-cchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCccc
Confidence 443 33334455678999999999999865321111 1111111 13789999999999976421
Q ss_pred -HHHHHHHHHccCC-CEEEEecCCCcCHHHHHHHHHHHH
Q 022351 92 -FKEWITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 92 -~~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
.++..++.+..+. +++.+||+++.|++++++.|.+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 153 CVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp CHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 1222233333455 899999999999999999987654
No 162
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.45 E-value=2.2e-07 Score=75.98 Aligned_cols=62 Identities=21% Similarity=0.133 Sum_probs=38.5
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc-CCCEEEEeCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS-HPNIYVLDTPGIL 211 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPGi~ 211 (298)
...++|+++|.+|||||||+|+|++. .......+..|++.....+.+.. ...+.++||||..
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 72 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKD----------QFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC----------CCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC----------CCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCCh
Confidence 34689999999999999999999841 11111112233333333333332 1258899999953
No 163
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.45 E-value=3.4e-08 Score=79.77 Aligned_cols=98 Identities=15% Similarity=0.066 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccC--CCCCCcEEEEEecCCCCChh--hHHHHHHHHHcc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHH--PFSSSRRILVLNKMDLASPT--QFKEWITFFDQQ 102 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l--~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~~ 102 (298)
||+ .+........+..+|++++|+|+..+.+... ..+..+. ...+.|+++|+||+|+.+.. ..++..+.....
T Consensus 63 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~ 141 (170)
T 1r2q_A 63 AGQ-ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDN 141 (170)
T ss_dssp CCS-GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT
T ss_pred CCc-HHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHc
Confidence 554 3444455677899999999999986532111 1111111 12468899999999996432 123333444456
Q ss_pred CCCEEEEecCCCcCHHHHHHHHHHH
Q 022351 103 NCPSFGVNSHNKDNVKEFLKFLQAH 127 (298)
Q Consensus 103 ~~~vi~iSa~~~~gi~~L~~~l~~~ 127 (298)
+.+++.+||+++.|+++++++|.+.
T Consensus 142 ~~~~~~~Sa~~g~gi~~l~~~i~~~ 166 (170)
T 1r2q_A 142 SLLFMETSAKTSMNVNEIFMAIAKK 166 (170)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 7789999999999999999998754
No 164
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.45 E-value=7e-08 Score=91.21 Aligned_cols=64 Identities=27% Similarity=0.282 Sum_probs=40.1
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE--ccCCCEEEEeCCCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI--ASHPNIYVLDTPGILPPE 214 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~--~~~~~~~liDTPGi~~~~ 214 (298)
....+|+++|.+|+|||||+|+|++ ...+.++..+|+|.+.....+ .....+.|+||||+....
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~-----------~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~ 97 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVG-----------QNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVG 97 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC------------------------CCCCEEEEEETTTEEEEEEECSSTTCCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHc-----------CCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCccc
Confidence 4568999999999999999999983 344567788999988765433 332368999999997643
No 165
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.45 E-value=2.5e-07 Score=74.68 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCchHHHHHHHhh
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.++|+++|.+|||||||+|+|++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 47899999999999999999983
No 166
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.45 E-value=2.8e-08 Score=82.90 Aligned_cols=98 Identities=14% Similarity=0.067 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC--CCCCcEEEEEecCCCCCh----hhHHHHHHHHHccCC
Q 022351 33 AAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP--FSSSRRILVLNKMDLASP----TQFKEWITFFDQQNC 104 (298)
Q Consensus 33 ~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~--~~~k~~IiVlNK~DL~~~----~~~~~~~~~~~~~~~ 104 (298)
.+........+..+|++++|+|+..+.+..+ ..+...+. ..+.|+++|+||+|+.+. ...+...+..+..+.
T Consensus 82 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (194)
T 3reg_A 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGC 161 (194)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTC
T ss_pred HHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCC
Confidence 4444555678999999999999987532222 11111111 246899999999999743 112333333334566
Q ss_pred C-EEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 105 P-SFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 105 ~-vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
. ++.+||+++.|++++++.+.+.+.+
T Consensus 162 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 162 VAYIEASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp SCEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred CEEEEeecCCCCCHHHHHHHHHHHHHh
Confidence 5 9999999999999999999877654
No 167
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.44 E-value=4.2e-08 Score=80.19 Aligned_cols=101 Identities=18% Similarity=0.106 Sum_probs=65.5
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhccCCC-----CCCc-EEEEEecCCCCChhh--HHHHHHHH
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRNHHPF-----SSSR-RILVLNKMDLASPTQ--FKEWITFF 99 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~~l~~-----~~k~-~IiVlNK~DL~~~~~--~~~~~~~~ 99 (298)
||+ .+........+..+|++++|+|+..+.+..+ ..+...+.. ...| +++|+||+|+.+... .+...++.
T Consensus 64 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~ 142 (178)
T 2hxs_A 64 GGQ-TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC 142 (178)
T ss_dssp TTC-CTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHH
T ss_pred CCC-ccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHH
Confidence 444 3344445577899999999999987533211 111111111 2456 789999999965321 22233333
Q ss_pred HccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+..+++++.+||+++.|+++++++|.+.+.+
T Consensus 143 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 143 QENGFSSHFVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp HHHTCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred HHcCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 3456789999999999999999999877644
No 168
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.44 E-value=2.7e-07 Score=78.47 Aligned_cols=104 Identities=14% Similarity=0.057 Sum_probs=59.8
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChhhH----------
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPTQF---------- 92 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~~~---------- 92 (298)
|..+...+........+..+|++++|+|+..+.+.... .+...+. ..+.|+++|+||+|+.+....
T Consensus 87 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 166 (214)
T 2j1l_A 87 WDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLE 166 (214)
T ss_dssp EEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCC
T ss_pred EECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccC
Confidence 44333355555566778999999999999865322111 1111111 147899999999999765322
Q ss_pred ----HHHHHHHHccCC-CEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 93 ----KEWITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 93 ----~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
++..+..+..+. +++.+||+++.|++++++.|.+.+.+
T Consensus 167 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 167 PVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp CCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 122233334565 78999999999999999999877654
No 169
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.44 E-value=1.8e-07 Score=77.39 Aligned_cols=58 Identities=26% Similarity=0.389 Sum_probs=41.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGIL 211 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~ 211 (298)
...++|+++|.+|||||||+|+|.+ .....+.+.+|.+.. .+.+. +..+.++||||..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~-----------~~~~~~~~t~g~~~~--~~~~~-~~~l~i~Dt~G~~ 71 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS-----------EDISHITPTQGFNIK--SVQSQ-GFKLNVWDIGGQR 71 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC-----------SCCEEEEEETTEEEE--EEEET-TEEEEEEECSSCG
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc-----------CCCCcccCcCCeEEE--EEEEC-CEEEEEEECCCCH
Confidence 4568999999999999999999983 233445556665432 22232 3358899999964
No 170
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.44 E-value=1e-07 Score=87.06 Aligned_cols=100 Identities=15% Similarity=0.075 Sum_probs=67.6
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHHc--
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFDQ-- 101 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~~-- 101 (298)
||+ .+........+..+|++|+|+|+.++.+... ..+..++.. .+.|+++|+||+|+.+....+++...+..
T Consensus 217 ~G~-~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~ 295 (329)
T 3o47_A 217 GGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 295 (329)
T ss_dssp C------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTT
T ss_pred CCC-HhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhh
Confidence 454 5555556677899999999999976543222 223333222 37899999999999876544555555432
Q ss_pred ---cCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 102 ---QNCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 102 ---~~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
.+++++.+||+++.|++++++.|.+.+.
T Consensus 296 ~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 296 LRHRNWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp CCSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred hhcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 2346899999999999999999987664
No 171
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.44 E-value=6.1e-08 Score=79.50 Aligned_cols=96 Identities=17% Similarity=0.038 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChhhH------------HHHH
Q 022351 33 AAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPTQF------------KEWI 96 (298)
Q Consensus 33 ~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~~~------------~~~~ 96 (298)
.+........+..+|++++|+|+..+.+..+. .+...+. ..+.|+++|+||+|+.+.... ++..
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~ 146 (182)
T 3bwd_D 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGE 146 (182)
T ss_dssp CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHH
T ss_pred hhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHH
Confidence 33444455678999999999999865332111 1111111 137899999999999654321 2222
Q ss_pred HHHHccCC-CEEEEecCCCcCHHHHHHHHHHHH
Q 022351 97 TFFDQQNC-PSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 97 ~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
+.....+. +++.+||+++.|++++++.+.+.+
T Consensus 147 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 147 ELKKLIGAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 23333454 789999999999999999987654
No 172
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.44 E-value=2.5e-07 Score=77.19 Aligned_cols=62 Identities=18% Similarity=0.282 Sum_probs=38.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGIL 211 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~ 211 (298)
...++|+++|.+|||||||+|+|.+ ........+..|++.....+.+... ..+.++||||..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTD----------DTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC------------------CCTTEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc----------CCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcH
Confidence 3468999999999999999999983 1111222334444444444444321 258899999953
No 173
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.44 E-value=2.6e-07 Score=75.74 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=39.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGILPP 213 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~~~ 213 (298)
..++|+++|.+|||||||+|+|+. ........+..+.+. ...+.+... -.+.++||||....
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~----------~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE----------GQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEY 67 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH----------SSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc----------CCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhh
Confidence 457999999999999999999983 122222333334333 222223221 14679999997653
No 174
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.43 E-value=4.8e-08 Score=81.11 Aligned_cols=93 Identities=18% Similarity=0.104 Sum_probs=64.2
Q ss_pred HHHHHhcCCCCeEEEEEeCCCCCCccc-H----HHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHccCCCEEEE
Q 022351 37 RAIADRMPLVDIILEVRDARIPFSSEF-D----QLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQNCPSFGV 109 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~-~----~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~i 109 (298)
......+..+|++++|+|+..+.+... . .+.... ..+.|+++|+||+|+.+... .+...+..+..+++++.+
T Consensus 86 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (189)
T 2gf9_A 86 TITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEA 164 (189)
T ss_dssp CSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEC
T ss_pred hhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEE
Confidence 344567899999999999976532211 1 111211 24789999999999975321 222333333456789999
Q ss_pred ecCCCcCHHHHHHHHHHHHHh
Q 022351 110 NSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 110 Sa~~~~gi~~L~~~l~~~i~~ 130 (298)
||+++.|+++++++|.+.+.+
T Consensus 165 Sa~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 165 SAKENINVKQVFERLVDVICE 185 (189)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999887654
No 175
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.43 E-value=2.2e-07 Score=76.30 Aligned_cols=59 Identities=20% Similarity=0.339 Sum_probs=39.1
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~ 212 (298)
.+.++|+++|.+|||||||+|+|.+ +......+..|.+.. .+.+. +..+.++||||...
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~-----------~~~~~~~~t~~~~~~--~~~~~-~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI-----------GEVVTTKPTIGFNVE--TLSYK-NLKLNVWDLGGQTS 74 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC-----------SEEEEECSSTTCCEE--EEEET-TEEEEEEEEC----
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc-----------CCcCccCCcCccceE--EEEEC-CEEEEEEECCCCHh
Confidence 4678999999999999999999982 333455565664432 23232 34588999999865
No 176
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.43 E-value=3.3e-07 Score=75.82 Aligned_cols=59 Identities=19% Similarity=0.334 Sum_probs=38.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~ 212 (298)
.+.++|+++|.+|||||||+|+|.+ +......+..|.+.. .+.+. +..+.++||||...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~-----------~~~~~~~~t~~~~~~--~~~~~-~~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM-----------NEVVHTSPTIGSNVE--EIVIN-NTRFLMWDIGGQES 72 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT-----------TSCEEEECCSCSSCE--EEEET-TEEEEEEECCC---
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc-----------CCCCcCcCCCccceE--EEEEC-CEEEEEEECCCCHh
Confidence 4568999999999999999999983 222244454454322 22232 34688999999854
No 177
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.43 E-value=9.6e-08 Score=79.45 Aligned_cols=101 Identities=14% Similarity=-0.007 Sum_probs=67.6
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccC--CCCCCcEEEEEecCCCCChh--hHHHHHHHHHcc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHH--PFSSSRRILVLNKMDLASPT--QFKEWITFFDQQ 102 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l--~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~~ 102 (298)
||+ .+........+..+|++|+|+|+..+.+... ..+..+. ...+.|+++|+||+|+.+.. ..+....+....
T Consensus 82 ~G~-~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 160 (193)
T 2oil_A 82 AGL-ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENN 160 (193)
T ss_dssp SCC-CTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT
T ss_pred CCc-hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHc
Confidence 444 3333445567889999999999986533211 1111111 12478999999999997532 123333344456
Q ss_pred CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 103 NCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 103 ~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+++++.+||+++.|++++++.|.+.+.+
T Consensus 161 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 161 GLLFLETSALDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 7789999999999999999998876654
No 178
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.43 E-value=2e-07 Score=79.06 Aligned_cols=63 Identities=19% Similarity=0.155 Sum_probs=42.5
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC--CCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH--PNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~--~~~~liDTPGi~~ 212 (298)
...++|+++|.+|||||||+|+|++ ........+..+++.....+....+ ..+.++||||...
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 73 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLD----------GRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEK 73 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTT----------CSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGG
T ss_pred cCccEEEEECCCCCCHHHHHHHHhc----------CCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchh
Confidence 4568999999999999999999983 2223344555665554444333222 2488999999754
No 179
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.43 E-value=5.3e-08 Score=82.75 Aligned_cols=93 Identities=10% Similarity=0.005 Sum_probs=63.0
Q ss_pred HHHHHhcCCCCeEEEEEeCCCCCCcccH-----HHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHccCCCEEEE
Q 022351 37 RAIADRMPLVDIILEVRDARIPFSSEFD-----QLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQNCPSFGV 109 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~-----~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~i 109 (298)
......+..+|++|+|+|+..+.+..+. .+.... ..+.|+++|+||+|+.+... .+.........+.+++.+
T Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (218)
T 4djt_A 76 VLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEI 154 (218)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEE
T ss_pred hHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEE
Confidence 3344567889999999999875332221 122211 24689999999999976522 122223333456789999
Q ss_pred ecCCCcCHHHHHHHHHHHHHh
Q 022351 110 NSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 110 Sa~~~~gi~~L~~~l~~~i~~ 130 (298)
||+++.|++++++.|.+.+.+
T Consensus 155 Sa~~g~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 155 SAKTAHNFGLPFLHLARIFTG 175 (218)
T ss_dssp BTTTTBTTTHHHHHHHHHHHC
T ss_pred ecCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999888765
No 180
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.42 E-value=4.2e-07 Score=74.91 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++|+++|.+|||||||+|+|++
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhc
Confidence 3468999999999999999999984
No 181
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.42 E-value=7.9e-08 Score=80.17 Aligned_cols=99 Identities=13% Similarity=0.048 Sum_probs=67.9
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HH----HhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQ----LRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQ 101 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~----l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~ 101 (298)
||+ .+........+..+|++++|+|+..+.+... .. +.... ..+.|+++|+||+|+.+.. ..+...++.+.
T Consensus 80 ~G~-~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~ 157 (192)
T 2fg5_A 80 AGQ-ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAES 157 (192)
T ss_dssp CCS-GGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT
T ss_pred CCc-hhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence 554 3444455677899999999999987532211 11 11111 2478999999999996422 23344455556
Q ss_pred cCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 102 QNCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
.+.+++.+||+++.|++++++.|.+.+.
T Consensus 158 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 158 IGAIVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp TTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred cCCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 6788999999999999999999876543
No 182
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.42 E-value=1.2e-07 Score=76.65 Aligned_cols=99 Identities=11% Similarity=-0.028 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhccC---CCCCCcEEEEEecCCCCChhh--HHHHHHHHHcc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRNHH---PFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQ 102 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~~l---~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~ 102 (298)
||+ .+........+..+|++++|+|+..+.+... ..+...+ .....|+++|+||+|+.+... .+.........
T Consensus 63 ~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~ 141 (170)
T 1z0j_A 63 AGL-ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSI 141 (170)
T ss_dssp CCS-GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHT
T ss_pred CCc-hhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHc
Confidence 454 3344455577899999999999987533221 1111111 124688999999999975322 22223333345
Q ss_pred CCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351 103 NCPSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 103 ~~~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
+.+++.+||+++.|++++++.|.+.+
T Consensus 142 ~~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 142 HAIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred CCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 67899999999999999999987653
No 183
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.42 E-value=1.7e-07 Score=91.45 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=29.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccce--eecCCCCeee
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHA--TVSPQPGETK 189 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~--~~~~~pg~T~ 189 (298)
...+|+++|.+|||||||||+|++ .+.. .++..|+||+
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg-----------~~~~~~~vs~~p~T~~ 103 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLE-----------QEVPGSRVGPEPTTDC 103 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHT-----------SCCSSCCCCSSCCCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC-----------CccccCccCCCCccce
Confidence 457999999999999999999994 2222 4666676654
No 184
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.41 E-value=2.4e-08 Score=81.56 Aligned_cols=99 Identities=18% Similarity=0.065 Sum_probs=65.3
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccC--CCCCCcEEEEEecCCCCChhh--HHHHHHHHHcc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHH--PFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQ 102 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l--~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~ 102 (298)
||+ .+....+...+..+|++++|+|+..+.+... ..+..+. ...+.|+++|+||+|+.+... .+.........
T Consensus 71 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 149 (179)
T 2y8e_A 71 AGQ-ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL 149 (179)
T ss_dssp CCS-GGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHH
T ss_pred CCc-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHc
Confidence 444 3344445567788999999999986532111 1111111 124789999999999975422 23333444445
Q ss_pred CCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351 103 NCPSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 103 ~~~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
+.+++.+||+++.|++++++.|.+.+
T Consensus 150 ~~~~~~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 150 NVMFIETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp TCEEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999987643
No 185
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.41 E-value=4e-07 Score=78.19 Aligned_cols=92 Identities=13% Similarity=0.043 Sum_probs=62.0
Q ss_pred HHHhcCCCCeEEEEEeCCCCCCcccH---HHhccCCC--CCCcEEEEEecCCCCChhhH-----HHHHHHHHccC--CCE
Q 022351 39 IADRMPLVDIILEVRDARIPFSSEFD---QLRNHHPF--SSSRRILVLNKMDLASPTQF-----KEWITFFDQQN--CPS 106 (298)
Q Consensus 39 i~~~l~~aDlVl~VvDa~~p~~~~~~---~l~~~l~~--~~k~~IiVlNK~DL~~~~~~-----~~~~~~~~~~~--~~v 106 (298)
+......+|++|+|+|+..+.+.... .+...+.. .+.|+++|+||+|+.+...+ ....+.....+ .++
T Consensus 102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (228)
T 2qu8_A 102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF 181 (228)
T ss_dssp HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence 44557889999999999876543211 22222222 37999999999999764321 12222333344 678
Q ss_pred EEEecCCCcCHHHHHHHHHHHHHh
Q 022351 107 FGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 107 i~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+.+||+++.|+++++++|.+.+.+
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 182 SSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999887754
No 186
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.41 E-value=4.2e-07 Score=74.09 Aligned_cols=60 Identities=30% Similarity=0.315 Sum_probs=38.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC-CCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH-PNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~-~~~~liDTPGi~~ 212 (298)
...++|+++|.+|||||||+|+|++. . .....++++.... .+.+.+. ..+.++||||...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~-----------~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 69 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS-----------Y--FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE 69 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS-----------S--CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC-----------c--CccccCCCcCceEEEEEEECCEEEEEEEEECCCchh
Confidence 45689999999999999999999841 1 1222333333222 1222221 2478999999654
No 187
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.40 E-value=2.7e-07 Score=81.10 Aligned_cols=84 Identities=19% Similarity=0.081 Sum_probs=58.4
Q ss_pred CCCeEEEEEeCCCC--CCccc--HHHhccC---CCCCCcEEEEEecCCCCChhhHHHHHHHHHc-cCCCEEEEecCCCcC
Q 022351 45 LVDIILEVRDARIP--FSSEF--DQLRNHH---PFSSSRRILVLNKMDLASPTQFKEWITFFDQ-QNCPSFGVNSHNKDN 116 (298)
Q Consensus 45 ~aDlVl~VvDa~~p--~~~~~--~~l~~~l---~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~-~~~~vi~iSa~~~~g 116 (298)
++|++|+|+|+..+ .+... ..+..+. ...+.|+++|.||+||.....++...+.... .+.+++.+||+++.|
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 69999999999876 33221 1111111 1147899999999999766555444444433 367899999999999
Q ss_pred HHHHHHHHHHHH
Q 022351 117 VKEFLKFLQAHV 128 (298)
Q Consensus 117 i~~L~~~l~~~i 128 (298)
++++++.|.+.+
T Consensus 242 v~elf~~l~~~l 253 (255)
T 3c5h_A 242 VDLAFSTLVQLI 253 (255)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 188
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.40 E-value=3.8e-07 Score=76.09 Aligned_cols=59 Identities=27% Similarity=0.367 Sum_probs=38.7
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~ 212 (298)
.+..+|+++|.+|||||||+|+|.+ ++.....+..+.+. ..+.+. +..+.++||||...
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~-----------~~~~~~~~t~~~~~--~~~~~~-~~~~~i~Dt~G~~~ 79 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKN-----------DRLATLQPTWHPTS--EELAIG-NIKFTTFDLGGHIQ 79 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHH-----------SCCCCCCCCCSCEE--EEEEET-TEEEEEEECCCSGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc-----------CCCCccccCCCCCe--EEEEEC-CEEEEEEECCCCHH
Confidence 3456999999999999999999984 22233444444442 233333 24688999999754
No 189
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.40 E-value=4.8e-08 Score=82.22 Aligned_cols=99 Identities=19% Similarity=0.123 Sum_probs=64.6
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChhhH------------
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPTQF------------ 92 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~~~------------ 92 (298)
||+ .+........+..+|++++|+|+..+.+.... .+...+. ..+.|+++|+||+|+.+....
T Consensus 81 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 159 (201)
T 2gco_A 81 AGQ-EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPV 159 (201)
T ss_dssp CCS-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCC
T ss_pred CCc-hhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcC
Confidence 454 33333444678999999999999864321111 1111111 137999999999999865321
Q ss_pred --HHHHHHHHccCC-CEEEEecCCCcCHHHHHHHHHHHH
Q 022351 93 --KEWITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 93 --~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
+...++....+. +++.+||+++.|++++++.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 160 RSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp CHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 122223334455 789999999999999999987654
No 190
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.40 E-value=3.1e-08 Score=81.43 Aligned_cols=100 Identities=15% Similarity=0.066 Sum_probs=65.6
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChhhH------------
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPTQF------------ 92 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~~~------------ 92 (298)
||+ .+........+..+|++++|+|+..+.+..+. .+...+. ..+.|+++|+||+|+.+....
T Consensus 61 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 139 (186)
T 1mh1_A 61 AGQ-EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 139 (186)
T ss_dssp CCS-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCC
T ss_pred CCC-HhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccC
Confidence 454 33434445678999999999999865322211 1111111 137899999999999754211
Q ss_pred --HHHHHHHHccCC-CEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 93 --KEWITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 93 --~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
+...+..+..+. +++.+||+++.|++++++.+.+.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 140 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp CHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 122223334455 8999999999999999999987764
No 191
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.40 E-value=5.8e-07 Score=72.27 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCchHHHHHHHhh
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.++|+++|.+|||||||+|+|.+
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999984
No 192
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.39 E-value=3e-07 Score=75.00 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++|+++|.+|||||||+|+|.+
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHh
Confidence 4568999999999999999999984
No 193
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.39 E-value=2.9e-07 Score=77.38 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=34.5
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeee--eEEEEEccC-CCEEEEeCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKD--IYSLKIASH-PNIYVLDTPGI 210 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~--~~~~~~~~~-~~~~liDTPGi 210 (298)
...++|+++|.+|||||||+|+|++ ... .....|.++.+ ...+.+... ..+.|+||||.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~-----------~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 84 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIE-----------NKF-KQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------------------CCEEEEEEEETTEEEEEEEECCTTH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh-----------CCC-CccCCCcccceeEEEEEEECCeeeEEEEEcCCCc
Confidence 4568999999999999999999983 111 11122322322 223333221 25889999995
No 194
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.39 E-value=1.1e-07 Score=89.21 Aligned_cols=102 Identities=14% Similarity=0.075 Sum_probs=70.5
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCc-EEEEEecCCCCC-hhhHH----HHHHHHH
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMDLAS-PTQFK----EWITFFD 100 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~-~IiVlNK~DL~~-~~~~~----~~~~~~~ 100 (298)
.-||| .++.+.+...+..+|++|+|+|++.+......++...+...+.| +++++||+|+.+ .+..+ +..+++.
T Consensus 81 DtpG~-~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~ 159 (405)
T 2c78_A 81 DCPGH-ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLN 159 (405)
T ss_dssp ECCCS-GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHH
T ss_pred ECCCh-HHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHH
Confidence 34777 56778888889999999999999987655444433332234677 789999999984 32222 2333343
Q ss_pred ccC-----CCEEEEecCCCcC------------------HHHHHHHHHHHHH
Q 022351 101 QQN-----CPSFGVNSHNKDN------------------VKEFLKFLQAHVR 129 (298)
Q Consensus 101 ~~~-----~~vi~iSa~~~~g------------------i~~L~~~l~~~i~ 129 (298)
..+ .+++++||+++.| +.+|++.|.+.++
T Consensus 160 ~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 160 QYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 333 5799999999876 7777777776554
No 195
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.39 E-value=2.7e-07 Score=75.36 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++|+++|.+|||||||+|+|++
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHh
Confidence 4568999999999999999999984
No 196
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.39 E-value=3.5e-07 Score=76.87 Aligned_cols=61 Identities=20% Similarity=0.202 Sum_probs=38.6
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeee--EEEEEccC-CCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDI--YSLKIASH-PNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~--~~~~~~~~-~~~~liDTPGi~~ 212 (298)
...++|+++|.+|||||||+|+|.+ .. ......|.++.+. ..+.+... ..+.|+||||...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~-----------~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSD-----------DT-YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH-----------CC-CCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc-----------CC-CCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHH
Confidence 3458999999999999999999984 11 1122233333332 23333321 1588999999654
No 197
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.39 E-value=6.6e-07 Score=72.87 Aligned_cols=101 Identities=13% Similarity=0.021 Sum_probs=67.8
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccC---CCCCCcEEEEEecCCCCChh-hHHHHHHHH
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHH---PFSSSRRILVLNKMDLASPT-QFKEWITFF 99 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l---~~~~k~~IiVlNK~DL~~~~-~~~~~~~~~ 99 (298)
||+ .+........+..+|++++|+|+..+.+... ..+.... ...+.|+++|+||+|+.... ..+...+..
T Consensus 64 ~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~ 142 (177)
T 1wms_A 64 AGQ-ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWC 142 (177)
T ss_dssp CCC-GGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHH
T ss_pred CCc-hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHH
Confidence 454 4445556678999999999999986532211 1122111 12578999999999997432 223333333
Q ss_pred H-ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 100 D-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 100 ~-~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
. ..+.+++.+||+++.|++++++.+.+.+.+
T Consensus 143 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 143 RDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp HHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 3 345689999999999999999998876643
No 198
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.39 E-value=3.8e-07 Score=75.80 Aligned_cols=63 Identities=19% Similarity=0.165 Sum_probs=38.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~~ 212 (298)
...++|+++|.+|||||||+|+|.+. .......+..|++.....+.+... ..+.|+||||...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 82 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDK----------RFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHS----------CCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC----------CCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchh
Confidence 34689999999999999999999841 111111222333333333433321 2588999999643
No 199
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.39 E-value=4.2e-07 Score=75.59 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++|+++|.+|||||||+|+|.+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc
Confidence 4568999999999999999999984
No 200
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.38 E-value=5.4e-07 Score=75.33 Aligned_cols=60 Identities=27% Similarity=0.280 Sum_probs=37.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC-CCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH-PNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~-~~~~liDTPGi~~ 212 (298)
...++|+++|.+|||||||+|+|++ .. .....++++.... .+.+... ..+.|+||||...
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~-----------~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 74 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMY-----------DE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 74 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH-----------SC--CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHh-----------CC--CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhh
Confidence 4568999999999999999999984 11 1122233332221 2223221 1588999999643
No 201
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.38 E-value=2.2e-07 Score=90.21 Aligned_cols=61 Identities=23% Similarity=0.147 Sum_probs=47.5
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP 89 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~ 89 (298)
-||| .++...+...+..+|.+|+|+|+..+.......+...+...+.|+++|+||+|+...
T Consensus 89 TPG~-~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 89 TPGH-ADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCCS-TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred CCCc-hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 3677 556667788899999999999999877666555544444468999999999999643
No 202
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.38 E-value=3.8e-07 Score=75.54 Aligned_cols=59 Identities=25% Similarity=0.375 Sum_probs=39.6
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~ 212 (298)
.+.++|+++|.+|||||||+|+|.. +......+..|.+.. .+... ...+.++||||...
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~-----------~~~~~~~~t~~~~~~--~~~~~-~~~~~~~Dt~G~~~ 78 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL-----------GDVVTTVPTVGVNLE--TLQYK-NISFEVWDLGGQTG 78 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC-----------SCCEEECSSTTCCEE--EEEET-TEEEEEEEECCSSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc-----------CCCCCcCCCCceEEE--EEEEC-CEEEEEEECCCCHh
Confidence 4578999999999999999999972 223333343443322 22222 33688999999754
No 203
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.38 E-value=2.9e-07 Score=86.23 Aligned_cols=102 Identities=12% Similarity=0.001 Sum_probs=70.5
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCc-EEEEEecCCCCC-hhhH----HHHHHHHH
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMDLAS-PTQF----KEWITFFD 100 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~-~IiVlNK~DL~~-~~~~----~~~~~~~~ 100 (298)
.-||| .++...+...+..+|++|+|+|++.+......+...++...+.| +++++||+|+.+ .+.. ++..++++
T Consensus 72 DtpG~-~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~ 150 (397)
T 1d2e_A 72 DCPGH-ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLT 150 (397)
T ss_dssp ECSSH-HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHH
T ss_pred ECCCh-HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHH
Confidence 34777 66788888999999999999999987654433332322235677 689999999985 3222 22333443
Q ss_pred ccC-----CCEEEEecCCCcC----------HHHHHHHHHHHHH
Q 022351 101 QQN-----CPSFGVNSHNKDN----------VKEFLKFLQAHVR 129 (298)
Q Consensus 101 ~~~-----~~vi~iSa~~~~g----------i~~L~~~l~~~i~ 129 (298)
..+ .+++++||+++.+ +.+|++.|.+.++
T Consensus 151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 333 4899999998653 7888888877654
No 204
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.38 E-value=2.8e-07 Score=90.65 Aligned_cols=101 Identities=13% Similarity=0.052 Sum_probs=72.1
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH-ccCC--
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD-QQNC-- 104 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~-~~~~-- 104 (298)
-||| ..+...+...+..+|.+|+|+|+..+...............+.|+++|+||+|+.... .....+.+. ..+.
T Consensus 80 TPGh-~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~-~~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 80 TPGH-VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD-VDRVKKQIEEVLGLDP 157 (600)
T ss_dssp CCCS-GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHHHHTSCCCG
T ss_pred CCCc-HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC-HHHHHHHHHHhhCCCc
Confidence 4777 5566777788899999999999998765544332222113578999999999997543 222223332 2344
Q ss_pred -CEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 105 -PSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 105 -~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+++++||+++.|+++|++.+.+.++.
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred ccEEEEEeecCCCchHHHHHHHHhccc
Confidence 48999999999999999999877654
No 205
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.37 E-value=5.1e-07 Score=72.16 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCchHHHHHHHhh
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.++|+++|.+|||||||+|+|.+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999984
No 206
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.37 E-value=1.2e-07 Score=79.62 Aligned_cols=99 Identities=13% Similarity=0.027 Sum_probs=63.7
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HH----HhccCCCCCCcEEEEEecCCCCChh--------hHHHH
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQ----LRNHHPFSSSRRILVLNKMDLASPT--------QFKEW 95 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~----l~~~l~~~~k~~IiVlNK~DL~~~~--------~~~~~ 95 (298)
||+ .+....+...+..+|++|+|+|+..+.+..+ .. +... ...+.|+++|+||+|+.+.. ..+..
T Consensus 85 ~G~-~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~ 162 (199)
T 2p5s_A 85 AGQ-ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFG 162 (199)
T ss_dssp TTC-TTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHH
T ss_pred CCC-cchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHH
Confidence 554 3444555677888999999999986533222 11 1111 12478999999999995211 11122
Q ss_pred HHHHHccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 96 ITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 96 ~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
.++....+.+++.+||+++.|+++++..|.+.+.
T Consensus 163 ~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 163 EKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 2233345678999999999999999999877653
No 207
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.37 E-value=4.6e-07 Score=76.61 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=38.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc--CCCEEEEeCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS--HPNIYVLDTPGIL 211 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~--~~~~~liDTPGi~ 211 (298)
...++|+++|.+|||||||+|+|+. ... ....+.++.+...+.+.. ...+.|+||||..
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~-----------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLT-----------GQY--RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE 65 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHH-----------SCC--CCBCCCCSCEEEEEECSSTTCCEEEEEECCCCH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC-----------CCc--ccccCCcceeeEEEEecCCCccEEEEEECCCCh
Confidence 3457999999999999999999984 111 122333444444444443 2358999999964
No 208
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.37 E-value=4.5e-07 Score=75.41 Aligned_cols=59 Identities=17% Similarity=0.338 Sum_probs=38.0
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceee--cCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATV--SPQPGETKDIYSLKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~--~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~ 212 (298)
....+|+++|.+|||||||+|+|++ .....+ .+..|.+.. .+. .....+.|+||||...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~-----------~~~~~~~~~~t~~~~~~--~~~-~~~~~~~i~Dt~G~~~ 75 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKP-----------AQSSSKHITATVGYNVE--TFE-KGRVAFTVFDMGGAKK 75 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSC-----------CC----CCCCCSSEEEE--EEE-ETTEEEEEEEECCSGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc-----------CCCcccccccccceeEE--EEE-eCCEEEEEEECCCCHh
Confidence 4568999999999999999999983 222322 444454332 222 2233588999999743
No 209
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.37 E-value=8.5e-08 Score=77.33 Aligned_cols=101 Identities=15% Similarity=0.012 Sum_probs=66.6
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC-CCCCcEEEEEecCCCCChhh--HHHHHHHHHcc
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP-FSSSRRILVLNKMDLASPTQ--FKEWITFFDQQ 102 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~-~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~ 102 (298)
.||+ .+........+..+|++++|+|+..+.+... ..+..+.. ..+.|+++|+||+|+.+... .+...+..+..
T Consensus 61 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 139 (168)
T 1z2a_A 61 TAGQ-EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRL 139 (168)
T ss_dssp CTTG-GGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHH
T ss_pred CCCc-HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHc
Confidence 3554 3333445567889999999999986532111 11111100 14789999999999975321 23333344445
Q ss_pred CCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 103 NCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 103 ~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
+++++.+||+++.|+++++++|.+.+.
T Consensus 140 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 140 KLRFYRTSVKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp TCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 778999999999999999999877653
No 210
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.37 E-value=7.3e-08 Score=77.79 Aligned_cols=97 Identities=15% Similarity=0.078 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-----HHhccCCCCCCcEEEEEecCCCCCh---hh--HHHHHHH
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-----QLRNHHPFSSSRRILVLNKMDLASP---TQ--FKEWITF 98 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-----~l~~~l~~~~k~~IiVlNK~DL~~~---~~--~~~~~~~ 98 (298)
||+ .+........+..+|++++|+|+..+.+..+. .+.... ..+.|+++|+||+|+.+. .. .+...+.
T Consensus 60 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~ 137 (170)
T 1ek0_A 60 AGQ-ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKL 137 (170)
T ss_dssp CCS-GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHH
T ss_pred CCC-hhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHH
Confidence 454 34444566778999999999999875322111 111111 247899999999999653 11 1222233
Q ss_pred HHccCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351 99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAH 127 (298)
Q Consensus 99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~ 127 (298)
....+.+++.+||+++.|+++++++|.+.
T Consensus 138 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (170)
T 1ek0_A 138 AEEKGLLFFETSAKTGENVNDVFLGIGEK 166 (170)
T ss_dssp HHHHTCEEEECCTTTCTTHHHHHHHHHTT
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 33456789999999999999999988643
No 211
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.36 E-value=9.8e-08 Score=88.02 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.....++++|.||||||||+|+|.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3468999999999999999999985
No 212
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.36 E-value=6.8e-07 Score=89.91 Aligned_cols=56 Identities=11% Similarity=0.198 Sum_probs=33.9
Q ss_pred EecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhh
Q 022351 109 VNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 109 iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.++..+.|+++++..+.++...+............+|+|+|.+|+|||||+|+|++
T Consensus 18 ~~~~~~~~~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g 73 (772)
T 3zvr_A 18 GSHMGNRGMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVG 73 (772)
T ss_dssp -------CGGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHS
T ss_pred ccccccccHHHHHHHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhC
Confidence 45556677777777766655443221111112346999999999999999999986
No 213
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.36 E-value=4.9e-07 Score=72.67 Aligned_cols=55 Identities=18% Similarity=0.302 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGIL 211 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~ 211 (298)
++|+++|.+|||||||+|+|.+ +......+..|. ....+.. ....+.++||||..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~-----------~~~~~~~~t~~~--~~~~~~~-~~~~~~i~Dt~G~~ 55 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKL-----------GEIVTTIPTIGF--NVETVEY-KNISFTVWDVGGQD 55 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH-----------HCSSCCCCCSSC--CEEEEEC-SSCEEEEEECCCCG
T ss_pred CEEEEECCCCCCHHHHHHHHHc-----------CCcCcccCcCce--eEEEEEE-CCEEEEEEEcCCCh
Confidence 3799999999999999999984 111111222221 1112222 33468999999974
No 214
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.35 E-value=1.5e-07 Score=78.57 Aligned_cols=100 Identities=22% Similarity=0.129 Sum_probs=66.6
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQ 101 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~ 101 (298)
||+.. .......+..+|++++|+|+..+.+..+ ..+.......+.|+++|+||+|+.+... .+...++...
T Consensus 84 ~G~~~--~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 161 (196)
T 2atv_A 84 AGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATE 161 (196)
T ss_dssp CCCCC--CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred CCCCc--ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence 45432 3344566788999999999986532211 1122222235789999999999965321 2222233334
Q ss_pred cCCCEEEEecCCCc-CHHHHHHHHHHHHHh
Q 022351 102 QNCPSFGVNSHNKD-NVKEFLKFLQAHVRN 130 (298)
Q Consensus 102 ~~~~vi~iSa~~~~-gi~~L~~~l~~~i~~ 130 (298)
.+++++.+||+++. |+++++++|.+.+.+
T Consensus 162 ~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 162 LACAFYECSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp HTSEEEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred hCCeEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence 46789999999999 999999999877654
No 215
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.35 E-value=5.5e-08 Score=81.75 Aligned_cols=94 Identities=13% Similarity=0.026 Sum_probs=63.1
Q ss_pred HHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHccCCCEEEE
Q 022351 37 RAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQNCPSFGV 109 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~i 109 (298)
......+..+|++++|+|+..+.+... ..+.......+.|+++|+||+|+.+... ...........+.+++.+
T Consensus 87 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 166 (201)
T 3oes_A 87 ILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMES 166 (201)
T ss_dssp CCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEE
Confidence 334567889999999999986432211 1122221124789999999999974321 122223333456789999
Q ss_pred ecCCCcCHHHHHHHHHHHHHh
Q 022351 110 NSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 110 Sa~~~~gi~~L~~~l~~~i~~ 130 (298)
||+++.|++++++.|.+.+.+
T Consensus 167 Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 167 SARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp CTTCHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999888765
No 216
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.35 E-value=2.5e-07 Score=87.62 Aligned_cols=91 Identities=20% Similarity=0.256 Sum_probs=62.6
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCC-CcEEEEEecCCCCCh--hhH----HHHHHHHH
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSS-SRRILVLNKMDLASP--TQF----KEWITFFD 100 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~-k~~IiVlNK~DL~~~--~~~----~~~~~~~~ 100 (298)
-||| .++...+...+..+|++|+|+|++.+......+...++...+ +++++|+||+|+.+. +.. +++.++++
T Consensus 111 tpGh-~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~ 189 (434)
T 1zun_B 111 TPGH-EQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAE 189 (434)
T ss_dssp CCCS-GGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCh-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHH
Confidence 3777 556677778899999999999999876544333222211234 468999999999862 222 23334444
Q ss_pred ccC-----CCEEEEecCCCcCHHH
Q 022351 101 QQN-----CPSFGVNSHNKDNVKE 119 (298)
Q Consensus 101 ~~~-----~~vi~iSa~~~~gi~~ 119 (298)
..+ .+++++||+++.|+++
T Consensus 190 ~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 190 GIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp TTTCCCSEEEEEECCTTTCTTTSS
T ss_pred HhCCCccCceEEEEeccCCCCccc
Confidence 555 4689999999999886
No 217
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.35 E-value=1.1e-07 Score=83.80 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=58.8
Q ss_pred CCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhh----HHHHHHHHHccCCCEEEEecCCCcCHHH
Q 022351 44 PLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ----FKEWITFFDQQNCPSFGVNSHNKDNVKE 119 (298)
Q Consensus 44 ~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~----~~~~~~~~~~~~~~vi~iSa~~~~gi~~ 119 (298)
..+|+|++|+|+..+ ..+..+..++...+.|+++|+||+|+..... .+.+.+ ..+.+++++||+++.|+++
T Consensus 82 ~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~---~lg~~vi~~SA~~g~gi~e 156 (256)
T 3iby_A 82 LEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLES---LLGCSVIPIQAHKNIGIPA 156 (256)
T ss_dssp SCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHH---HHCSCEEECBGGGTBSHHH
T ss_pred CCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHH---HcCCCEEEEECCCCCCHHH
Confidence 899999999999863 2233344444456899999999999865432 222222 3478999999999999999
Q ss_pred HHHHHHHH
Q 022351 120 FLKFLQAH 127 (298)
Q Consensus 120 L~~~l~~~ 127 (298)
+++.+.+.
T Consensus 157 l~~~i~~~ 164 (256)
T 3iby_A 157 LQQSLLHC 164 (256)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhh
Confidence 99998754
No 218
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.35 E-value=4.5e-07 Score=76.06 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++|+++|.+|||||||+|+|.+
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHh
Confidence 4568999999999999999999984
No 219
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.35 E-value=6.6e-07 Score=73.32 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
+.++|+++|.+|||||||+|+|+.
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhh
Confidence 468999999999999999999984
No 220
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.34 E-value=1.7e-07 Score=77.91 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=39.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGI 210 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi 210 (298)
..++|+++|.+|||||||+|+|++. .......+.+|++.....+.+... ..+.|+||||.
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 82 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADD----------TFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHH----------TTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcC----------CCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCCh
Confidence 4689999999999999999999841 111122223344444444444332 24889999993
No 221
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.34 E-value=6.1e-07 Score=75.79 Aligned_cols=59 Identities=20% Similarity=0.263 Sum_probs=37.0
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC-CCEEEEeCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH-PNIYVLDTPGI 210 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~-~~~~liDTPGi 210 (298)
...++|+++|.+|||||||+|+|++ .. ......|.++.+.. .+.+.+. -.+.++||||.
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~-----------~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 85 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQ-----------GL-FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH-----------SS-CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHh-----------CC-CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 3458999999999999999999984 11 11122222223322 3333221 14889999995
No 222
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.34 E-value=1.9e-07 Score=77.76 Aligned_cols=100 Identities=15% Similarity=0.015 Sum_probs=65.2
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--H---HHhccCC-CCCCcEEEEEecCCCCChhh-HHHHHHHHHc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--D---QLRNHHP-FSSSRRILVLNKMDLASPTQ-FKEWITFFDQ 101 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~---~l~~~l~-~~~k~~IiVlNK~DL~~~~~-~~~~~~~~~~ 101 (298)
||+ .+........+..+|++++|+|+..+.+... . .+..... ..+.|+++|+||+|+.+... .+........
T Consensus 64 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 142 (199)
T 2gf0_A 64 TGS-HQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQE 142 (199)
T ss_dssp CGG-GSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHH
T ss_pred CCh-HHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHH
Confidence 454 3333445566788999999999986432111 1 1222111 13689999999999975321 2222233334
Q ss_pred cCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 102 QNCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
.+.+++.+||+++.|+++++++|.+.+.
T Consensus 143 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 143 WKCAFMETSAKMNYNVKELFQELLTLET 170 (199)
T ss_dssp HTCEEEECBTTTTBSHHHHHHHHHHHCS
T ss_pred hCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 5678999999999999999999987654
No 223
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.34 E-value=5.9e-07 Score=72.55 Aligned_cols=21 Identities=48% Similarity=0.687 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHHh
Q 022351 143 VTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~ 163 (298)
++|+++|.+|||||||+|+|.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999997
No 224
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.34 E-value=4.8e-07 Score=84.07 Aligned_cols=100 Identities=8% Similarity=0.048 Sum_probs=70.2
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcE-EEEEe-cCCCCChhhHHH----HHHHHHc
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRR-ILVLN-KMDLASPTQFKE----WITFFDQ 101 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~-IiVlN-K~DL~~~~~~~~----~~~~~~~ 101 (298)
-||| .++.+.+...+..+|++|+|+| .........+...++...+.|. ++++| |+|+ +.+..+. ..+++..
T Consensus 67 tPGh-~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~ 143 (370)
T 2elf_A 67 AHSY-PKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSG 143 (370)
T ss_dssp CTTT-TTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTT
T ss_pred CCCh-HHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHh
Confidence 3677 5677778888899999999999 6655443333322222346777 99999 9999 6543332 2233322
Q ss_pred c---CCCEEE--EecCC---CcCHHHHHHHHHHHHHh
Q 022351 102 Q---NCPSFG--VNSHN---KDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 102 ~---~~~vi~--iSa~~---~~gi~~L~~~l~~~i~~ 130 (298)
. ..++++ +||++ +.|+++|++.|.+.++.
T Consensus 144 ~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 144 TVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp STTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred cCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 2 257899 99999 99999999999887764
No 225
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.34 E-value=6.3e-07 Score=74.33 Aligned_cols=59 Identities=17% Similarity=0.267 Sum_probs=37.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGIL 211 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~ 211 (298)
.+.++|+++|.+|||||||+|+|++ ........+..|.+. ..+.. ....+.|+||||..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~----------~~~~~~~~~t~~~~~--~~~~~-~~~~~~l~Dt~G~~ 78 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIAS----------GQFNEDMIPTVGFNM--RKITK-GNVTIKLWDIGGQP 78 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH----------SCCCCSCCCCCSEEE--EEEEE-TTEEEEEEEECCSH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHc----------CCCCCccCCCCceeE--EEEEe-CCEEEEEEECCCCH
Confidence 4568999999999999999999984 111112233333332 22222 23358899999953
No 226
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.33 E-value=7e-07 Score=74.02 Aligned_cols=61 Identities=28% Similarity=0.384 Sum_probs=37.6
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~ 212 (298)
.+.++|+++|.+|||||||+|+|.+.. .......+..|.+ ...+.+. +..+.++||||...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~---------~~~~~~~~t~~~~--~~~~~~~-~~~~~l~Dt~G~~~ 79 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSN---------AQSQNILPTIGFS--IEKFKSS-SLSFTVFDMSGQGR 79 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGG---------GCCSSCCCCSSEE--EEEEECS-SCEEEEEEECCSTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC---------CCCCCcCCcccee--EEEEEEC-CEEEEEEECCCCHH
Confidence 456899999999999999999998310 0111222222322 2223332 34689999999654
No 227
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.33 E-value=5e-07 Score=75.90 Aligned_cols=59 Identities=27% Similarity=0.344 Sum_probs=36.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~ 212 (298)
.+..+|+++|.+|||||||+|+|.+ ++.....+..|.+. ..+.+.+ ..+.++||||...
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~-----------~~~~~~~~t~~~~~--~~~~~~~-~~l~i~Dt~G~~~ 81 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD-----------DRLGQHVPTLHPTS--EELTIAG-MTFTTFDLGGHIQ 81 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC-----------C------CCCCCSC--EEEEETT-EEEEEEEECC---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc-----------CCCCccCCCCCcee--EEEEECC-EEEEEEECCCcHh
Confidence 4567999999999999999999973 22233334444442 2233332 3688999999654
No 228
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.33 E-value=9.4e-07 Score=72.51 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.+.++|+++|.+|||||||+|+|+.
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4568999999999999999999983
No 229
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.33 E-value=1.5e-07 Score=79.01 Aligned_cols=101 Identities=15% Similarity=0.093 Sum_probs=66.6
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCC---CCCCcEEEEEecCCCCChhh-HHHHHHHH
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHP---FSSSRRILVLNKMDLASPTQ-FKEWITFF 99 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~---~~~k~~IiVlNK~DL~~~~~-~~~~~~~~ 99 (298)
||+ .+........+..+|++|+|+|+..+.+... ..+..... ..+.|+++|+||+|+..... .+....+.
T Consensus 65 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 143 (207)
T 1vg8_A 65 AGQ-ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWC 143 (207)
T ss_dssp CSS-GGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHH
T ss_pred CCc-HHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHH
Confidence 554 3333334567889999999999986532211 11211111 13689999999999974322 22333333
Q ss_pred H-ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 100 D-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 100 ~-~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
. ..+.+++.+||+++.|+++++++|.+.+.+
T Consensus 144 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 144 YSKNNIPYFETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp HHTTSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HhcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3 456789999999999999999999877654
No 230
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.33 E-value=5.3e-08 Score=83.04 Aligned_cols=104 Identities=13% Similarity=0.112 Sum_probs=67.9
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC--CCCCcEEEEEecCCCCCh-------------
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP--FSSSRRILVLNKMDLASP------------- 89 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~--~~~k~~IiVlNK~DL~~~------------- 89 (298)
|..+...+........+..+|++|+|+|+..+.+..+ ..+...+. ..+.|+++|.||+|+.+.
T Consensus 80 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 159 (214)
T 3q3j_B 80 WDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQA 159 (214)
T ss_dssp EEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCC
T ss_pred EECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccC
Confidence 4433334444455567999999999999987533222 11211111 247899999999999642
Q ss_pred -hhHHHHHHHHHccCC-CEEEEecCCCcC-HHHHHHHHHHHHHh
Q 022351 90 -TQFKEWITFFDQQNC-PSFGVNSHNKDN-VKEFLKFLQAHVRN 130 (298)
Q Consensus 90 -~~~~~~~~~~~~~~~-~vi~iSa~~~~g-i~~L~~~l~~~i~~ 130 (298)
...+...+.....+. +++.+||+++.| ++++++.+.+.+..
T Consensus 160 ~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 160 PISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp CCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 111222233334466 789999999998 99999999877654
No 231
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.33 E-value=4.9e-07 Score=73.92 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=38.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~~ 212 (298)
.+.++|+++|.+|||||||+|+|.+ +......+..|.+. ...+.+.+. ..+.++||||...
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~-----------~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 66 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLT-----------GSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD 66 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHH-----------SCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh-----------CCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch
Confidence 3568999999999999999999984 12222233333222 112223221 1478899999654
No 232
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.33 E-value=5.6e-07 Score=81.15 Aligned_cols=89 Identities=15% Similarity=0.230 Sum_probs=67.5
Q ss_pred HHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCC-hhhHHHHHHHHHc-cCC-CEEEEecCCCcC
Q 022351 40 ADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLAS-PTQFKEWITFFDQ-QNC-PSFGVNSHNKDN 116 (298)
Q Consensus 40 ~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~-~~~~~~~~~~~~~-~~~-~vi~iSa~~~~g 116 (298)
...+..+|++++|+|+.. ++.....+.+.+...+.|+++++||+|+.. .....+..+.+.+ .++ .++++||+++.|
T Consensus 83 ~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~ 161 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN 161 (301)
T ss_dssp TSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred HHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCC
Confidence 456899999999999977 665555555444345799999999999987 4555555555543 455 689999999999
Q ss_pred HHHHHHHHHHHHH
Q 022351 117 VKEFLKFLQAHVR 129 (298)
Q Consensus 117 i~~L~~~l~~~i~ 129 (298)
+++|++.+...++
T Consensus 162 v~~l~~~i~~~l~ 174 (301)
T 1ega_A 162 VDTIAAIVRKHLP 174 (301)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCC
Confidence 9999999876543
No 233
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.32 E-value=4.3e-08 Score=82.85 Aligned_cols=97 Identities=14% Similarity=0.066 Sum_probs=63.6
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChhhH------------
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPTQF------------ 92 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~~~------------ 92 (298)
||+ .+........+..+|++++|+|+..+.+..+. .+...+. ..+.|+++|+||+|+.+....
T Consensus 86 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 164 (204)
T 4gzl_A 86 AGL-EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 164 (204)
T ss_dssp CCS-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCC
T ss_pred CCc-hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccc
Confidence 444 44444555689999999999999865332221 1111111 147999999999999764321
Q ss_pred --HHHHHHHHccCC-CEEEEecCCCcCHHHHHHHHHH
Q 022351 93 --KEWITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 93 --~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~ 126 (298)
+....+.+..+. +++.+||+++.|++++++++.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 165 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 201 (204)
T ss_dssp CHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 122222333444 5899999999999999998864
No 234
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.31 E-value=9.3e-08 Score=81.82 Aligned_cols=100 Identities=20% Similarity=0.055 Sum_probs=64.6
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQ 101 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~ 101 (298)
||+ .+........+..+|++|+|+|+..+.+..+ ..+.... ..+.|+++|+||+|+.+... .+...++...
T Consensus 70 ~G~-~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 147 (223)
T 3cpj_B 70 AGQ-ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQE 147 (223)
T ss_dssp TTT-TTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHHH
T ss_pred CCc-cchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHH
Confidence 454 3444445567899999999999987533221 1111111 24789999999999965321 2233334445
Q ss_pred cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 102 QNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+++++.+||+++.|+++++++|.+.+.+
T Consensus 148 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 148 NQLLFTETSALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp TTCEEEECCCC-CCCHHHHHHHHHHHHTT
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999877654
No 235
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.31 E-value=1.9e-07 Score=76.70 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEcc-CCCEEEEeCCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIAS-HPNIYVLDTPGILP 212 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~-~~~~~liDTPGi~~ 212 (298)
..++|+++|.+|||||||+|+|.+. . ......|+++.+.. .+.+.+ ...+.++||||...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~-----------~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED-----------A-FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69 (183)
T ss_dssp EEEEEEEECCCCC----------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC-----------C-CCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh
Confidence 4689999999999999999999831 1 11122233333332 233322 12588999999643
No 236
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.31 E-value=1.7e-07 Score=90.11 Aligned_cols=104 Identities=13% Similarity=0.023 Sum_probs=68.6
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHHc
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFDQ 101 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~~ 101 (298)
|..+...+.......++..+|++|+|+|+..+....+ ..+..++.. .++|+++|+||+|+.+.....+..+.+..
T Consensus 371 ~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~ 450 (497)
T 3lvq_E 371 WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 450 (497)
T ss_dssp EEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTC
T ss_pred EECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhch
Confidence 4433334444455678999999999999987532211 122233221 47999999999999765433333333321
Q ss_pred -----cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 102 -----QNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 102 -----~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+.+++.+||+++.|+++++++|.+.+..
T Consensus 451 ~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 451 TRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp TTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC-
T ss_pred hhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 12358999999999999999999877644
No 237
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.31 E-value=8.4e-08 Score=77.58 Aligned_cols=92 Identities=17% Similarity=0.073 Sum_probs=60.0
Q ss_pred HHHHHhcCCCCeEEEEEeCCCCCCccc-HH----HhccC-CCCCCcEEEEEecCCCCChhhH--HHHHHHHHccCCCEEE
Q 022351 37 RAIADRMPLVDIILEVRDARIPFSSEF-DQ----LRNHH-PFSSSRRILVLNKMDLASPTQF--KEWITFFDQQNCPSFG 108 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~----l~~~l-~~~~k~~IiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~ 108 (298)
......+..+|.+++|+|+..+.+... .. +.... ...+.|+++|+||+|+.+...+ ..........+.+++.
T Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 145 (172)
T 2erx_A 66 AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFME 145 (172)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEE
Confidence 444456778999999999986532211 11 22211 1147899999999999654221 2222223344678999
Q ss_pred EecCCCcCHHHHHHHHHHHH
Q 022351 109 VNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 109 iSa~~~~gi~~L~~~l~~~i 128 (298)
+||+++.|+++++++|.+.+
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 146 TSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp CBTTTTBSHHHHHHHHHHTC
T ss_pred ecCCCCcCHHHHHHHHHHHH
Confidence 99999999999999987654
No 238
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.30 E-value=1.1e-07 Score=78.16 Aligned_cols=88 Identities=11% Similarity=0.088 Sum_probs=60.1
Q ss_pred HHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccC---CCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCC
Q 022351 37 RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHH---PFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHN 113 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l---~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~ 113 (298)
......+..+|++++|+|+..+.+.....+...+ ...+.|+++|+||+|+.+... +.....+.+++.+||++
T Consensus 75 ~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~SA~~ 149 (172)
T 2gj8_A 75 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL-----GMSEVNGHALIRLSART 149 (172)
T ss_dssp HHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----EEEEETTEEEEECCTTT
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh-----hhhhccCCceEEEeCCC
Confidence 3445668899999999999877654433222111 124689999999999854211 01112345789999999
Q ss_pred CcCHHHHHHHHHHHHH
Q 022351 114 KDNVKEFLKFLQAHVR 129 (298)
Q Consensus 114 ~~gi~~L~~~l~~~i~ 129 (298)
+.|++++++.|.+.+.
T Consensus 150 g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 150 GEGVDVLRNHLKQSMG 165 (172)
T ss_dssp CTTHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9999999999876543
No 239
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.30 E-value=5.4e-07 Score=75.58 Aligned_cols=61 Identities=25% Similarity=0.373 Sum_probs=37.6
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC-CCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH-PNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~-~~~~liDTPGi~~ 212 (298)
...++|+++|.+|||||||+|+|.+. .......|++|.+.. .+.+.+. -.+.++||||...
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 84 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGL------------QGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCE------------ECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSG
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhc------------cCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCcc
Confidence 45689999999999999999999731 111123344443332 2223221 1367889999743
No 240
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.30 E-value=9.1e-07 Score=73.90 Aligned_cols=60 Identities=22% Similarity=0.210 Sum_probs=35.1
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccC-CCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASH-PNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~-~~~~liDTPGi~~ 212 (298)
...++|+++|.+|||||||+|+|.+ .. .....++|+.+... +.+.+. -.+.++||||...
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~-----------~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 80 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTT-----------NG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------------------CCSSEEEEEEEEETTEEEEEEEEECCCSTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh-----------CC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHH
Confidence 4578999999999999999999983 11 12223333332222 222211 1467999999855
No 241
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.30 E-value=1.2e-06 Score=72.97 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++|+++|.+|||||||+|+|.+
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3568999999999999999999984
No 242
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.30 E-value=8.3e-07 Score=74.09 Aligned_cols=59 Identities=17% Similarity=0.257 Sum_probs=35.0
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~ 212 (298)
.+.++|+++|.+|||||||+|+|.. +......+..|.. ...+.. ....+.++||||...
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~-----------~~~~~~~~t~~~~--~~~~~~-~~~~~~i~Dt~G~~~ 85 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL-----------GEIVTTIPTIGFN--VETVEY-KNICFTVWDVGGQDK 85 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS-----------SCCEEEEEETTEE--EEEEEE-TTEEEEEEECC----
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh-----------CCccccCCcCcee--EEEEEE-CCEEEEEEECCCCHh
Confidence 4678999999999999999999973 2222222222211 112222 233588999999754
No 243
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.30 E-value=6.1e-07 Score=76.07 Aligned_cols=58 Identities=26% Similarity=0.390 Sum_probs=38.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~ 212 (298)
....+|+++|.+|||||||+|+|.+. ......++..|+++.+. ....+.++||||...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~---------~~~~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~ 67 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD---------SVRPTVVSQEPLSAADY------DGSGVTLVDFPGHVK 67 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS---------SCCCBCCCSSCEEETTG------GGSSCEEEECCCCGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC---------CCCCeeeecCceEEEEe------eCceEEEEECCCcHH
Confidence 45679999999999999999999841 11112223344443322 233689999999854
No 244
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.29 E-value=1.2e-06 Score=73.79 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.+.++|+++|.+|||||||+|++..
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHh
Confidence 4578999999999999999999983
No 245
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.29 E-value=1.3e-07 Score=79.98 Aligned_cols=94 Identities=17% Similarity=0.014 Sum_probs=62.4
Q ss_pred HHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChhh----------HHHHHHHHHcc
Q 022351 37 RAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPTQ----------FKEWITFFDQQ 102 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~~----------~~~~~~~~~~~ 102 (298)
......+..+|++|+|+|+..+.+..+. .+...+. ..+.|+++|+||+|+.+... .+...+.....
T Consensus 72 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~ 151 (212)
T 2j0v_A 72 RLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQI 151 (212)
T ss_dssp C--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHc
Confidence 3344678999999999999865322111 1111111 13789999999999965432 22222333344
Q ss_pred CC-CEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 103 NC-PSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 103 ~~-~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+. +++.+||+++.|++++++.+.+.+.+
T Consensus 152 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 152 GAAAYIECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred CCceEEEccCCCCCCHHHHHHHHHHHHhh
Confidence 54 78999999999999999999887754
No 246
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.29 E-value=5.1e-08 Score=83.17 Aligned_cols=99 Identities=11% Similarity=0.079 Sum_probs=67.0
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccC
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQN 103 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~ 103 (298)
||+ .+........+..+|++++|+|+..+.+..+ ..+... ..+.|+++|+||+|+.+.........+....+
T Consensus 72 ~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 148 (221)
T 3gj0_A 72 AGQ-EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN 148 (221)
T ss_dssp CSG-GGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH--STTCCEEEEEECTTSSSCSSCGGGCCHHHHHT
T ss_pred CCh-HHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCccccccccHHHHHHHHHcC
Confidence 444 3333344567889999999999986532211 112222 14789999999999975432222222333456
Q ss_pred CCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 104 CPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 104 ~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+++.+||+++.|+++++++|.+.+..
T Consensus 149 ~~~~~~Sa~~~~gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 149 LQYYDISAKSNYNFEKPFLWLARKLIG 175 (221)
T ss_dssp CEEEECBGGGTBTTTHHHHHHHHHHHT
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999999999887654
No 247
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.29 E-value=8.9e-07 Score=74.21 Aligned_cols=90 Identities=22% Similarity=0.189 Sum_probs=61.4
Q ss_pred HhcCCCCeEEEEEeCCCCCCccc--HHH---hccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHccCCCEEEEecCC
Q 022351 41 DRMPLVDIILEVRDARIPFSSEF--DQL---RNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQQNCPSFGVNSHN 113 (298)
Q Consensus 41 ~~l~~aDlVl~VvDa~~p~~~~~--~~l---~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~~~~~vi~iSa~~ 113 (298)
.++..+|++|+|+|+.++.+... ..+ .......+.|+++|.||+|+.+.. ..++..++.+..+.+++.+||++
T Consensus 92 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~ 171 (195)
T 3cbq_A 92 HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAAL 171 (195)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTT
T ss_pred HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCC
Confidence 45678999999999986432111 112 111112478999999999997532 12233333334567899999999
Q ss_pred CcCHHHHHHHHHHHHHh
Q 022351 114 KDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 114 ~~gi~~L~~~l~~~i~~ 130 (298)
+.|++++++.+.+.+.+
T Consensus 172 ~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 172 HHNTRELFEGAVRQIRL 188 (195)
T ss_dssp TBSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887754
No 248
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.28 E-value=1.1e-06 Score=72.69 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
+.++|+++|.+|||||||+|+|++
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEECcCCCCHHHHHHHHHc
Confidence 357999999999999999999984
No 249
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.28 E-value=3.6e-07 Score=87.73 Aligned_cols=92 Identities=13% Similarity=0.089 Sum_probs=59.3
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-------cccHHHhccCCC-CCCcEEEEEecCCCCC--hhhHHHH-
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFS-------SEFDQLRNHHPF-SSSRRILVLNKMDLAS--PTQFKEW- 95 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~-------~~~~~l~~~l~~-~~k~~IiVlNK~DL~~--~~~~~~~- 95 (298)
.-||| .++.+.+...+..+|++|+|+|++.+.. ....+...++.. ..+|+++|+||+|+.+ ....++.
T Consensus 117 DTPG~-~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~ 195 (483)
T 3p26_A 117 DAPGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIK 195 (483)
T ss_dssp CCCCC-GGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHH
T ss_pred ECCCc-HHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHH
Confidence 33777 6788888899999999999999987622 222222222112 2357999999999986 2222222
Q ss_pred ---HHHHHcc-----CCCEEEEecCCCcCHHH
Q 022351 96 ---ITFFDQQ-----NCPSFGVNSHNKDNVKE 119 (298)
Q Consensus 96 ---~~~~~~~-----~~~vi~iSa~~~~gi~~ 119 (298)
.+++... +.+++++||+++.|+++
T Consensus 196 ~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 196 SKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 2223222 34689999999999863
No 250
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.28 E-value=9.2e-07 Score=72.48 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
..++|+++|.+|||||||+|+|..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 457999999999999999999984
No 251
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.28 E-value=5.4e-07 Score=86.08 Aligned_cols=90 Identities=14% Similarity=0.180 Sum_probs=65.1
Q ss_pred HHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCcC
Q 022351 37 RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDN 116 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~g 116 (298)
+.....+..+|++++|+|+..+....+..+...+. .+|+++|+||+|+.+....... +.+ ....+++.+||+++.|
T Consensus 295 ~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~~~~-~~~-~~~~~~i~iSAktg~G 370 (462)
T 3geh_A 295 ERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLITSL-EYP-ENITQIVHTAAAQKQG 370 (462)
T ss_dssp ----CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGSTTC-CCC-TTCCCEEEEBTTTTBS
T ss_pred HHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhhHHH-HHh-ccCCcEEEEECCCCCC
Confidence 34456789999999999999887766665655433 4799999999999876533210 001 1245799999999999
Q ss_pred HHHHHHHHHHHHHh
Q 022351 117 VKEFLKFLQAHVRN 130 (298)
Q Consensus 117 i~~L~~~l~~~i~~ 130 (298)
+++|++.|.+.+..
T Consensus 371 i~eL~~~i~~~~~~ 384 (462)
T 3geh_A 371 IDSLETAILEIVQT 384 (462)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887654
No 252
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.28 E-value=1.4e-06 Score=80.25 Aligned_cols=92 Identities=17% Similarity=0.189 Sum_probs=65.7
Q ss_pred HHHhcCCCCeEEEEEeCCCCC--Cccc-HHHh-ccCC-CCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCC
Q 022351 39 IADRMPLVDIILEVRDARIPF--SSEF-DQLR-NHHP-FSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHN 113 (298)
Q Consensus 39 i~~~l~~aDlVl~VvDa~~p~--~~~~-~~l~-~~l~-~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~ 113 (298)
+......+|.+++|+|+..+. +... ..+. .+.. ..++|+++|+||+|+.....++...+.+...+.+++.+||++
T Consensus 240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTT
T ss_pred HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCC
Confidence 334455799999999987643 2111 1121 1111 127999999999999887666555555555677899999999
Q ss_pred CcCHHHHHHHHHHHHHh
Q 022351 114 KDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 114 ~~gi~~L~~~l~~~i~~ 130 (298)
++|++++++++.+.+..
T Consensus 320 g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TBTHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999999999887754
No 253
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.28 E-value=2e-07 Score=77.97 Aligned_cols=92 Identities=14% Similarity=0.001 Sum_probs=61.3
Q ss_pred HHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChh--------------hHHHHHHHHH
Q 022351 39 IADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPT--------------QFKEWITFFD 100 (298)
Q Consensus 39 i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~--------------~~~~~~~~~~ 100 (298)
....+..+|++++|+|+..+.+..+. .+...+. ..+.|+++|+||+|+.+.. ..+.......
T Consensus 85 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 164 (201)
T 2q3h_A 85 RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAE 164 (201)
T ss_dssp GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH
T ss_pred hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHH
Confidence 34578999999999999865332221 1111111 1378999999999997521 1112222222
Q ss_pred ccCC-CEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 101 QQNC-PSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 101 ~~~~-~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
..+. +++.+||+++.|++++++.+.+.+.+
T Consensus 165 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 165 EIKAASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp HHTCSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hcCCcEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 3455 78999999999999999999877654
No 254
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.28 E-value=3e-07 Score=77.60 Aligned_cols=101 Identities=19% Similarity=0.128 Sum_probs=64.8
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC--CCCCcEEEEEecCCCCChhhHHHH--------
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP--FSSSRRILVLNKMDLASPTQFKEW-------- 95 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~--~~~k~~IiVlNK~DL~~~~~~~~~-------- 95 (298)
.||+ .+........+..+|++++|+|+..+.+... ..+...+. ..+.|+++|+||+|+.+.....+.
T Consensus 80 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 158 (207)
T 2fv8_A 80 TAGQ-EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEP 158 (207)
T ss_dssp CTTC-TTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCC
T ss_pred CCCc-HHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCC
Confidence 3454 3333444567899999999999986432111 11111111 147999999999999764322211
Q ss_pred ------HHHHHccCC-CEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 96 ------ITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 96 ------~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
.+.....+. +++.+||+++.|+++++++|.+.+.
T Consensus 159 v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 159 VRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp CCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 112223344 7899999999999999999987654
No 255
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.28 E-value=7.5e-07 Score=76.09 Aligned_cols=63 Identities=21% Similarity=0.202 Sum_probs=37.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~~ 212 (298)
...++|+++|.+|||||||+|+|.+. .......+..|++.....+.+... ..+.|+||||...
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 74 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKN----------EFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHC----------CCCC------CCSEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcC----------CCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccc
Confidence 34589999999999999999999841 111111222232222223333221 2588999999644
No 256
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.28 E-value=1.1e-06 Score=72.84 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++|+++|.+|||||||+|+|++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHh
Confidence 4568999999999999999999984
No 257
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.28 E-value=3e-07 Score=90.50 Aligned_cols=101 Identities=16% Similarity=0.166 Sum_probs=67.8
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh-----------------h
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT-----------------Q 91 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~-----------------~ 91 (298)
||| ..+.......+..+|++|+|+|+..+..........++...+.|+++++||+|+.+.. .
T Consensus 78 PGh-e~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 78 PGH-EAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp CTT-SCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred CCc-HHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 565 3333333456788999999999998765544333333334689999999999996420 0
Q ss_pred H--------HHHHHHHHccC---------------CCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 92 F--------KEWITFFDQQN---------------CPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 92 ~--------~~~~~~~~~~~---------------~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+ .+..+.+...+ .+++++||+++.|+++|+++|...++.
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 1 11222222222 268999999999999999999987764
No 258
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.27 E-value=1.1e-06 Score=73.15 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++|+++|.+|||||||+|+|.+
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhc
Confidence 4568999999999999999999984
No 259
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.27 E-value=1.3e-06 Score=71.40 Aligned_cols=90 Identities=12% Similarity=0.017 Sum_probs=58.9
Q ss_pred HhcCCCCeEEEEEeCCCCCCcccH-----HHhccCC--CCCCcEEEEEecCCCCC---hh-hHHHHHHHHHc-cCCCEEE
Q 022351 41 DRMPLVDIILEVRDARIPFSSEFD-----QLRNHHP--FSSSRRILVLNKMDLAS---PT-QFKEWITFFDQ-QNCPSFG 108 (298)
Q Consensus 41 ~~l~~aDlVl~VvDa~~p~~~~~~-----~l~~~l~--~~~k~~IiVlNK~DL~~---~~-~~~~~~~~~~~-~~~~vi~ 108 (298)
.++..+|++++|+|+..+.+..+. .+..... ..+.|+++|.||+|+.+ .. ..++..++... .+.+++.
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~ 147 (178)
T 2iwr_A 68 KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYE 147 (178)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEE
T ss_pred HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEE
Confidence 456679999999999875432211 1211111 14789999999999932 11 11222222222 2568899
Q ss_pred EecCCCcCHHHHHHHHHHHHHh
Q 022351 109 VNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 109 iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+||+++.|++++++.+.+.+.+
T Consensus 148 ~Sa~~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 148 TXATYGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHH
T ss_pred EeccccCCHHHHHHHHHHHHHH
Confidence 9999999999999998876654
No 260
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.26 E-value=4.3e-07 Score=76.80 Aligned_cols=99 Identities=12% Similarity=0.051 Sum_probs=60.3
Q ss_pred chhhHHHHHH-HHHHhcCCCCeEEEEEeCCCCCCccc---HHHhcc-----CCCCCCcEEEEEecCCCCChhhHHHHHHH
Q 022351 28 YGPHMAAATR-AIADRMPLVDIILEVRDARIPFSSEF---DQLRNH-----HPFSSSRRILVLNKMDLASPTQFKEWITF 98 (298)
Q Consensus 28 fpghm~~~~~-~i~~~l~~aDlVl~VvDa~~p~~~~~---~~l~~~-----l~~~~k~~IiVlNK~DL~~~~~~~~~~~~ 98 (298)
.||+ .+... .+..++..+|++++|+|+........ ..+... ....+.|+++|+||+|+.+....+...+.
T Consensus 61 t~G~-~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 139 (214)
T 2fh5_B 61 LPGH-ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQ 139 (214)
T ss_dssp CCCC-HHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHH
T ss_pred CCCC-hhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHH
Confidence 3566 44444 45567999999999999975211111 112211 11246899999999999754322222211
Q ss_pred H----H-------------------c--------------c--CCCEEEEecCCC------cCHHHHHHHHHHH
Q 022351 99 F----D-------------------Q--------------Q--NCPSFGVNSHNK------DNVKEFLKFLQAH 127 (298)
Q Consensus 99 ~----~-------------------~--------------~--~~~vi~iSa~~~------~gi~~L~~~l~~~ 127 (298)
+ . + . +.+++.+||+++ .|++++.++|.+.
T Consensus 140 l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 140 LEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp HHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred HHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 1 1 0 0 335788999999 9999999988653
No 261
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.26 E-value=4.4e-07 Score=75.32 Aligned_cols=89 Identities=13% Similarity=0.061 Sum_probs=59.1
Q ss_pred hcCCCCeEEEEEeCCCCCCccc-HHH-hccCCC---CCCcEEEEEecCCCCCh----hhHHHHHHHHHccC-CCEEEEec
Q 022351 42 RMPLVDIILEVRDARIPFSSEF-DQL-RNHHPF---SSSRRILVLNKMDLASP----TQFKEWITFFDQQN-CPSFGVNS 111 (298)
Q Consensus 42 ~l~~aDlVl~VvDa~~p~~~~~-~~l-~~~l~~---~~k~~IiVlNK~DL~~~----~~~~~~~~~~~~~~-~~vi~iSa 111 (298)
.+..+|++++|+|+..+.+..+ ..+ ..+... .+.|+++|.||+|+... ...+...+.....+ .+++.+||
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 161 (184)
T 3ihw_A 82 FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCA 161 (184)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBT
T ss_pred eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecC
Confidence 5566999999999987533222 112 111111 46899999999999421 11222333333444 68899999
Q ss_pred CCCcCHHHHHHHHHHHHHh
Q 022351 112 HNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 112 ~~~~gi~~L~~~l~~~i~~ 130 (298)
+++.|++++++.+.+.+.+
T Consensus 162 ~~~~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 162 TYGLNVERVFQDVAQKVVA 180 (184)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999877654
No 262
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.25 E-value=1.4e-07 Score=79.03 Aligned_cols=87 Identities=10% Similarity=0.015 Sum_probs=57.8
Q ss_pred HHhcCCCCeEEEEEeCCCCCCcccHHHhccCC-----CCCCcEEEEEecCCCCChhhH----H----HHHHHH-H----c
Q 022351 40 ADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVLNKMDLASPTQF----K----EWITFF-D----Q 101 (298)
Q Consensus 40 ~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~-----~~~k~~IiVlNK~DL~~~~~~----~----~~~~~~-~----~ 101 (298)
..++..+|++|+|+|+..+.......+..++. ..+.|+++|.||+||.+.+.. . ...+.+ + .
T Consensus 90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (196)
T 3llu_A 90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK 169 (196)
T ss_dssp HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence 46777899999999998762222222222221 247899999999999874321 1 111222 2 2
Q ss_pred cCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351 102 QNCPSFGVNSHNKDNVKEFLKFLQAH 127 (298)
Q Consensus 102 ~~~~vi~iSa~~~~gi~~L~~~l~~~ 127 (298)
.+.+++.+||++ .|+++++..+.+.
T Consensus 170 ~~~~~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 170 LHLSFYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp SCEEEEEECTTS-THHHHHHHHHHHH
T ss_pred CCcceEEEEech-hhHHHHHHHHHHH
Confidence 345789999999 9999999887653
No 263
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.25 E-value=4.6e-07 Score=77.87 Aligned_cols=104 Identities=19% Similarity=0.100 Sum_probs=70.6
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--H---HHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--D---QLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITF 98 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~---~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~ 98 (298)
-|..+.+.+.......++..+|.+++|.|...+.+..+ . .+... ...+.|++||.||+||.... ..++..++
T Consensus 66 iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~-~~~~~piilVgNK~Dl~~~r~V~~~e~~~~ 144 (216)
T 4dkx_A 66 LWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTDLADKRQVSIEEGERK 144 (216)
T ss_dssp EECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-HTTSSEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHh-cCCCCeEEEEeeccchHhcCcccHHHHhhH
Confidence 47766666666666678999999999999886533222 1 11111 12568999999999996432 12233333
Q ss_pred HHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.++.+..++.+||+++.|++++++.|.+.+..
T Consensus 145 a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 145 AKELNVMFIETSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp HHHHTCEEEEEBTTTTBSHHHHHHHHHHHC--
T ss_pred HHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 34456788999999999999999988766543
No 264
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.25 E-value=1e-07 Score=90.15 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=67.4
Q ss_pred HHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH-ccCCCEEEEecCCC
Q 022351 36 TRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD-QQNCPSFGVNSHNK 114 (298)
Q Consensus 36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~-~~~~~vi~iSa~~~ 114 (298)
.+.+...+..+|++|+|+|+ ........+...+...+.|+++|+||+|+.+.... +..+.+. ..+.+++.+||+++
T Consensus 104 ~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~v~~vSAktg 180 (423)
T 3qq5_A 104 VEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAKVLLVSALQK 180 (423)
T ss_dssp HHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCCCCCCSSCCT
T ss_pred HHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCCEEEEECCCC
Confidence 34456788899999999998 33444444444443458999999999999865433 2223332 34678999999999
Q ss_pred cCHHHHHHHHHHHHHh
Q 022351 115 DNVKEFLKFLQAHVRN 130 (298)
Q Consensus 115 ~gi~~L~~~l~~~i~~ 130 (298)
.|++++++.|.+.+++
T Consensus 181 ~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 181 KGFDDIGKTISEILPG 196 (423)
T ss_dssp TSTTTHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHhhhh
Confidence 9999999999887743
No 265
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.25 E-value=9.5e-07 Score=72.91 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++|+++|.+|||||||+|+|.+
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhc
Confidence 4568999999999999999999984
No 266
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.25 E-value=9.3e-07 Score=74.33 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++|+++|.+|||||||+|+|.+
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhh
Confidence 3468999999999999999999983
No 267
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.25 E-value=9.5e-07 Score=74.13 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++|+++|.+|||||||+|+|.+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999984
No 268
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.24 E-value=1.4e-06 Score=90.74 Aligned_cols=102 Identities=16% Similarity=0.085 Sum_probs=71.4
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCc-EEEEEecCCCCChhh-H----HHHHHHHH
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMDLASPTQ-F----KEWITFFD 100 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~-~IiVlNK~DL~~~~~-~----~~~~~~~~ 100 (298)
.-||| .++...+...+..+|++|+|+|++.+......+....+...+.| +|+++||+|+.+... . ++..+++.
T Consensus 365 DTPGH-edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk 443 (1289)
T 3avx_A 365 DCPGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLS 443 (1289)
T ss_dssp ECCCH-HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHH
T ss_pred ECCCh-HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHH
Confidence 34777 67888888999999999999999987655544333322224677 789999999985322 1 22333343
Q ss_pred ccC-----CCEEEEecCCC--------cCHHHHHHHHHHHHH
Q 022351 101 QQN-----CPSFGVNSHNK--------DNVKEFLKFLQAHVR 129 (298)
Q Consensus 101 ~~~-----~~vi~iSa~~~--------~gi~~L~~~l~~~i~ 129 (298)
..+ .+++++||+++ .|+.+|++.|.+.++
T Consensus 444 ~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 444 QYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred hccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 333 57999999999 568888888876553
No 269
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.24 E-value=1e-06 Score=83.57 Aligned_cols=72 Identities=21% Similarity=0.380 Sum_probs=44.5
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhh-cchhhh----------hcCCc--------cceeecCCCCeeeeeEEEEEc-cC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQI-GRITAA----------EKGKL--------RHATVSPQPGETKDIYSLKIA-SH 199 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~----------~~~~~--------~~~~~~~~pg~T~~~~~~~~~-~~ 199 (298)
...++|+++|.+|+|||||+|+|+.. +.+... +.++. ........+|+|.+.....+. .+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 45689999999999999999999642 111100 00000 001122346888887754432 33
Q ss_pred CCEEEEeCCCCC
Q 022351 200 PNIYVLDTPGIL 211 (298)
Q Consensus 200 ~~~~liDTPGi~ 211 (298)
..+.++||||..
T Consensus 95 ~~~~iiDTPGh~ 106 (439)
T 3j2k_7 95 KHFTILDAPGHK 106 (439)
T ss_pred eEEEEEECCChH
Confidence 469999999964
No 270
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.24 E-value=1.3e-07 Score=79.26 Aligned_cols=61 Identities=21% Similarity=0.207 Sum_probs=37.7
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeee--EEEEEccC-CCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDI--YSLKIASH-PNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~--~~~~~~~~-~~~~liDTPGi~~ 212 (298)
...++|+++|.+|||||||+|+|++ .. ......|++|.+. ..+.+... ..+.|+||||...
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 94 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFAD-----------DT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBC-----------CC-CCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc-----------CC-CCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence 3468999999999999999999983 11 1111122223222 23333221 1488999999644
No 271
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.22 E-value=4.8e-07 Score=83.19 Aligned_cols=93 Identities=16% Similarity=0.340 Sum_probs=62.7
Q ss_pred HHHHHhcCCCCeEEEEEeCCCC-----CCccc---HHHhccCC-CCCCcEEEEEecCCCCChhh-HHHHHHHHHccCCCE
Q 022351 37 RAIADRMPLVDIILEVRDARIP-----FSSEF---DQLRNHHP-FSSSRRILVLNKMDLASPTQ-FKEWITFFDQQNCPS 106 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p-----~~~~~---~~l~~~l~-~~~k~~IiVlNK~DL~~~~~-~~~~~~~~~~~~~~v 106 (298)
....+.++++|++|+|+|+... +.... .++..+.. ..++|+++|+||+|+..... .+.+.+.+ ....++
T Consensus 228 ~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l-~~~~~v 306 (342)
T 1lnz_A 228 HQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKL-TDDYPV 306 (342)
T ss_dssp HHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHC-CSCCCB
T ss_pred HHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHh-hcCCCE
Confidence 3445556779999999999652 11111 12222211 24799999999999986532 33333333 112578
Q ss_pred EEEecCCCcCHHHHHHHHHHHHHh
Q 022351 107 FGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 107 i~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+.+||+++.|+++|++.|.+.+.+
T Consensus 307 ~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 307 FPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp CCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred EEEECCCCcCHHHHHHHHHHHHhh
Confidence 999999999999999999888754
No 272
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.22 E-value=8.9e-08 Score=85.21 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=57.6
Q ss_pred cCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhh----HHHHHHHHHccCCCEEEEecCCCcCHH
Q 022351 43 MPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ----FKEWITFFDQQNCPSFGVNSHNKDNVK 118 (298)
Q Consensus 43 l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~----~~~~~~~~~~~~~~vi~iSa~~~~gi~ 118 (298)
...+|++++|+|+..+ ..+..+...+...+.|+++|+||+|+.+... .+.+.+ ..+.+++++||+++.|++
T Consensus 83 ~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~---~lg~~~i~~SA~~g~gi~ 157 (274)
T 3i8s_A 83 SGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSA---RLGCPVIPLVSTRGRGIE 157 (274)
T ss_dssp HTCCSEEEEEEEGGGH--HHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHH---HHTSCEEECCCGGGHHHH
T ss_pred hcCCCEEEEEecCCCh--HHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHH---hcCCCEEEEEcCCCCCHH
Confidence 4899999999999763 2222233332235899999999999864422 222222 346899999999999999
Q ss_pred HHHHHHHHHH
Q 022351 119 EFLKFLQAHV 128 (298)
Q Consensus 119 ~L~~~l~~~i 128 (298)
+|++.+.+.+
T Consensus 158 el~~~i~~~~ 167 (274)
T 3i8s_A 158 ALKLAIDRYK 167 (274)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHHHH
Confidence 9999886543
No 273
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.21 E-value=1.3e-06 Score=73.55 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
..++|+++|.+|||||||+|+|.+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECcCCCCHHHHHHHHhc
Confidence 457999999999999999999984
No 274
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.21 E-value=1.8e-06 Score=72.09 Aligned_cols=25 Identities=20% Similarity=0.506 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++|+++|.+|||||||+|.+.+
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4568999999999999999998873
No 275
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.20 E-value=9.7e-07 Score=74.76 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++|+++|.+|||||||+|+|++
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhc
Confidence 3468999999999999999999983
No 276
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.20 E-value=2.1e-06 Score=72.87 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~ 163 (298)
...++|+++|.+|||||||+|+|.
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~ 55 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFA 55 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHH
T ss_pred cceEEEEEECcCCCCHHHHHHHHH
Confidence 456899999999999999999998
No 277
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.20 E-value=1.6e-06 Score=71.71 Aligned_cols=22 Identities=27% Similarity=0.538 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
++|+++|.+|||||||+|.|.+
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999983
No 278
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.19 E-value=1.9e-06 Score=79.42 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.+|+++|.+|||||||+|+|.+
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4999999999999999999985
No 279
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.19 E-value=1.3e-06 Score=82.23 Aligned_cols=58 Identities=29% Similarity=0.511 Sum_probs=43.7
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~ 212 (298)
-.++++|.||||||||+|+|.+ ....++..|++|..... +.......+.++||||+..
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg------------~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTR------------AHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCS------------SCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred CEEEEECCCCCcHHHHHHHHHc------------CCccccCcccceecceeeEEEecCcceEEEEecccccc
Confidence 4689999999999999999983 22356788888876553 3333335689999999864
No 280
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.18 E-value=9.9e-07 Score=87.12 Aligned_cols=72 Identities=22% Similarity=0.321 Sum_probs=43.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhh-cchhhh----------hcCCcc--------ceeecCCCCeeeeeEEEEE-ccC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQI-GRITAA----------EKGKLR--------HATVSPQPGETKDIYSLKI-ASH 199 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~----------~~~~~~--------~~~~~~~pg~T~~~~~~~~-~~~ 199 (298)
...++|+++|.+|+|||||+|+|+.. +.+... ..|++. .......+|+|.+.....+ ..+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 55789999999999999999999832 100000 000000 0000113688877664333 234
Q ss_pred CCEEEEeCCCCC
Q 022351 200 PNIYVLDTPGIL 211 (298)
Q Consensus 200 ~~~~liDTPGi~ 211 (298)
..+.|+||||..
T Consensus 245 ~~~~iiDTPG~e 256 (611)
T 3izq_1 245 ANFTIVDAPGHR 256 (611)
T ss_dssp CEEEEEECCSSS
T ss_pred ceEEEEECCCCc
Confidence 469999999974
No 281
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.18 E-value=6e-07 Score=75.07 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=6.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
..++|+++|.+|||||||+|+|.+
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~ 42 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTS 42 (208)
T ss_dssp EEEEEEEC----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999983
No 282
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.17 E-value=3.4e-06 Score=69.91 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.+.++|+++|.+|||||||+|.++.
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 5578999999999999999999984
No 283
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.17 E-value=2.3e-06 Score=83.08 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=36.1
Q ss_pred CcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhh
Q 022351 114 KDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 114 ~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
..|++.+.+++.+......+.+.......++|+++|.||||||||+|+|.+
T Consensus 13 ~~g~~~i~~yl~~l~~~~~~g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~ 63 (535)
T 3dpu_A 13 KQGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIG 63 (535)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTCCCBCCCEEEEEEESSSCSSHHHHHHHHHC
T ss_pred HhCHHHHHHHHHHHHHhhccCcccccccceEEEEECCCCCCHHHHHHHHhc
Confidence 467888888887765421111111234568999999999999999999983
No 284
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.16 E-value=2.9e-06 Score=70.99 Aligned_cols=61 Identities=21% Similarity=0.218 Sum_probs=36.3
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCCC
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGILP 212 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~~ 212 (298)
.++++++|.+|||||||+|.|.+. .......+..|++.....+.+.+. -.+.++||||...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~----------~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 66 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN----------EFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS----------CCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC----------CCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchh
Confidence 478999999999999999999841 111112222233322223333321 1367899999643
No 285
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.16 E-value=6.3e-06 Score=67.72 Aligned_cols=87 Identities=13% Similarity=0.079 Sum_probs=57.2
Q ss_pred cCCCCeEEEEEeCCCCCC-----------cccHHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHccC-----C
Q 022351 43 MPLVDIILEVRDARIPFS-----------SEFDQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQQN-----C 104 (298)
Q Consensus 43 l~~aDlVl~VvDa~~p~~-----------~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~~~-----~ 104 (298)
...+++++.|+|+..... ..+..+...+...+.|+++|+||+|+.... ..+.+.+.+. .. .
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFE-VPLSEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHT-CCGGGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhh-hhhhccCC
Confidence 566889999999753110 011112222222579999999999998643 3334444331 11 1
Q ss_pred CEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 105 PSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 105 ~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+++.+||+++.|++++++++.+.+.+
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcch
Confidence 47999999999999999999888765
No 286
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.16 E-value=1.4e-06 Score=76.85 Aligned_cols=81 Identities=17% Similarity=0.084 Sum_probs=58.7
Q ss_pred CCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhh----HHHHHHHHHccCCCEEEEecCCCcCHHH
Q 022351 44 PLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ----FKEWITFFDQQNCPSFGVNSHNKDNVKE 119 (298)
Q Consensus 44 ~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~----~~~~~~~~~~~~~~vi~iSa~~~~gi~~ 119 (298)
..+|++++|+|+..+. ....+...+...+.|+++|+||+|+..... .+.+.+ ..+.+++++||+++.|+++
T Consensus 82 ~~~d~ii~V~D~t~~~--~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~---~lg~~vi~~SA~~g~gi~e 156 (258)
T 3a1s_A 82 GDADLVILVADSVNPE--QSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQK---HLGIPVVFTSSVTGEGLEE 156 (258)
T ss_dssp SCCSEEEEEEETTSCH--HHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHH---HHCSCEEECCTTTCTTHHH
T ss_pred cCCCEEEEEeCCCchh--hHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHH---HcCCCEEEEEeeCCcCHHH
Confidence 6899999999998642 222232222235899999999999864321 222322 3478999999999999999
Q ss_pred HHHHHHHHHH
Q 022351 120 FLKFLQAHVR 129 (298)
Q Consensus 120 L~~~l~~~i~ 129 (298)
+++.+.+.+.
T Consensus 157 l~~~i~~~~~ 166 (258)
T 3a1s_A 157 LKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999987664
No 287
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.15 E-value=3.2e-06 Score=71.20 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++|+++|.+|||||||+|.|..
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc
Confidence 4568999999999999999999983
No 288
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.15 E-value=1.1e-06 Score=71.93 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++|+++|.+|||||||+|++..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc
Confidence 3568999999999999999999984
No 289
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.14 E-value=3.2e-07 Score=76.24 Aligned_cols=91 Identities=16% Similarity=0.113 Sum_probs=61.0
Q ss_pred HHHhcCCCCeEEEEEeCCCCCCccc-HHH-hccCC-----CCCCcEEEEEecCCCCChh--hHHHHHHHHHccCCCEEEE
Q 022351 39 IADRMPLVDIILEVRDARIPFSSEF-DQL-RNHHP-----FSSSRRILVLNKMDLASPT--QFKEWITFFDQQNCPSFGV 109 (298)
Q Consensus 39 i~~~l~~aDlVl~VvDa~~p~~~~~-~~l-~~~l~-----~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~~~~~vi~i 109 (298)
+...+..+|++++|+|+..+.+..+ ..+ ..+.. ..+.|+++|+||+|+.... ..++..++.+..+++++.+
T Consensus 85 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 164 (187)
T 3c5c_A 85 CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEV 164 (187)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEE
Confidence 3467889999999999986432111 111 11111 1478999999999996432 1222333334456789999
Q ss_pred ec-CCCcCHHHHHHHHHHHHH
Q 022351 110 NS-HNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 110 Sa-~~~~gi~~L~~~l~~~i~ 129 (298)
|| +++.|++++++.+.+.+.
T Consensus 165 Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 165 SACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp CSSSCSHHHHHHHHHHHHHHH
T ss_pred eecCccccHHHHHHHHHHHHh
Confidence 99 899999999999877653
No 290
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.14 E-value=1.4e-06 Score=83.55 Aligned_cols=72 Identities=22% Similarity=0.345 Sum_probs=43.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhh-cchhhh----------hcCC--------ccceeecCCCCeeeeeEEEEEc-cC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQI-GRITAA----------EKGK--------LRHATVSPQPGETKDIYSLKIA-SH 199 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~----------~~~~--------~~~~~~~~~pg~T~~~~~~~~~-~~ 199 (298)
...++|+++|.+|+|||||+|+|+.. +.+... ..|. .........+|+|.+.....+. ..
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 46789999999999999999999742 111100 0000 0112334556888877655443 34
Q ss_pred CCEEEEeCCCCC
Q 022351 200 PNIYVLDTPGIL 211 (298)
Q Consensus 200 ~~~~liDTPGi~ 211 (298)
..+.|+||||..
T Consensus 111 ~~~~iiDTPG~~ 122 (483)
T 3p26_A 111 ANFTIVDAPGHR 122 (483)
T ss_dssp CEEEEECCCCCG
T ss_pred ceEEEEECCCcH
Confidence 469999999983
No 291
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.14 E-value=2e-06 Score=72.78 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++|+++|.+|||||||+|+|.+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Confidence 3468999999999999999999984
No 292
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.14 E-value=7.2e-07 Score=80.41 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcCCCCeEEEEEeCCCCCCccc------HHHhccCCCCCCcEEEEEecCCCCChhh--------------H
Q 022351 33 AAATRAIADRMPLVDIILEVRDARIPFSSEF------DQLRNHHPFSSSRRILVLNKMDLASPTQ--------------F 92 (298)
Q Consensus 33 ~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~------~~l~~~l~~~~k~~IiVlNK~DL~~~~~--------------~ 92 (298)
.+.......++..+|++++|+|+..+.+..+ ..+... ..++|+++|+||+|+.+... .
T Consensus 214 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~ 291 (332)
T 2wkq_A 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 291 (332)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCH
T ss_pred hhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhh--CCCCcEEEEEEchhcccccchhhhccccccccccH
Confidence 4444555567999999999999987533222 112222 13799999999999965321 1
Q ss_pred HHHHHHHHccCC-CEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 93 KEWITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 93 ~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
+...++.+..+. +++.+||+++.|++++++.|.+.+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 292 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp HHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 122233334455 7899999999999999999877653
No 293
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.13 E-value=2.5e-06 Score=72.47 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++|+++|.+|||||||+|+|++
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEECcCCCCHHHHHHHHhc
Confidence 3468999999999999999999984
No 294
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.13 E-value=2e-06 Score=81.54 Aligned_cols=90 Identities=17% Similarity=0.162 Sum_probs=60.1
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCC-------CCcccHHHhccCCCCC-CcEEEEEecCCCCCh----hh----
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIP-------FSSEFDQLRNHHPFSS-SRRILVLNKMDLASP----TQ---- 91 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p-------~~~~~~~l~~~l~~~~-k~~IiVlNK~DL~~~----~~---- 91 (298)
-||| .++...+...+..+|++|+|+|++.+ ..........++...+ +++++++||+|+.+. +.
T Consensus 91 tpG~-~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~ 169 (435)
T 1jny_A 91 APGH-RDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEI 169 (435)
T ss_dssp CSSS-TTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHH
T ss_pred CCCc-HHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHH
Confidence 4677 66778888999999999999999874 2222222222111124 468999999999862 22
Q ss_pred HHHHHHHHHccC-----CCEEEEecCCCcCHH
Q 022351 92 FKEWITFFDQQN-----CPSFGVNSHNKDNVK 118 (298)
Q Consensus 92 ~~~~~~~~~~~~-----~~vi~iSa~~~~gi~ 118 (298)
.++..+++...+ .+++++||+++.|+.
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~ 201 (435)
T 1jny_A 170 VDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT 201 (435)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred HHHHHHHHHHcCCCcCCceEEEeecccCcccc
Confidence 223333443334 468999999999986
No 295
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.12 E-value=2e-06 Score=71.80 Aligned_cols=24 Identities=42% Similarity=0.519 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
..++|+++|.||||||||+|.+.+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999999984
No 296
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.11 E-value=3.9e-06 Score=69.94 Aligned_cols=62 Identities=21% Similarity=0.239 Sum_probs=37.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCC-CEEEEeCCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP-NIYVLDTPGILP 212 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~liDTPGi~~ 212 (298)
..++++++|.+|||||||+|.|.+. .......+..|++.....+.+.+.. .+.++||||...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~----------~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN----------EFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS----------CCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC----------CCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcc
Confidence 3579999999999999999999841 1111222333333222334343211 345799999754
No 297
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.11 E-value=3.4e-06 Score=69.98 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
..++|+++|.+|||||||+|+|.+
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~ 40 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAN 40 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999999984
No 298
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.11 E-value=7.2e-07 Score=87.81 Aligned_cols=72 Identities=22% Similarity=0.265 Sum_probs=30.0
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhh-cchhhh----------hcCCc--------cceeecCCCCeeeeeEEEEEc-cC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQI-GRITAA----------EKGKL--------RHATVSPQPGETKDIYSLKIA-SH 199 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~----------~~~~~--------~~~~~~~~pg~T~~~~~~~~~-~~ 199 (298)
...++|+++|.+|+|||||+|+|+.. +.+... ..|+. ........+|+|.+.....+. .+
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 45679999999999999999999741 111100 00000 000111257888887654332 23
Q ss_pred CCEEEEeCCCCC
Q 022351 200 PNIYVLDTPGIL 211 (298)
Q Consensus 200 ~~~~liDTPGi~ 211 (298)
..+.|+||||..
T Consensus 255 ~~i~iiDTPGh~ 266 (592)
T 3mca_A 255 KIYEIGDAPGHR 266 (592)
T ss_dssp ----CCEEESSS
T ss_pred eEEEEEECCChH
Confidence 468999999964
No 299
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.11 E-value=2.9e-06 Score=81.48 Aligned_cols=59 Identities=19% Similarity=0.314 Sum_probs=38.9
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~ 212 (298)
...++|+++|.||||||||+|+|.+ .+.....+..|++.. .+.. .+..+.|+||||...
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~-----------~~~~~~~~T~~~~~~--~~~~-~~~~~~l~Dt~G~~~ 378 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKL-----------GQSVTTIPTVGFNVE--TVTY-KNVKFNVWDVGGQDK 378 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH-----------SSCCCCCCCSSEEEE--EEES-SSCEEEEEEECCCGG
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhc-----------CCCCCcCCccceeEE--EEEe-CCEEEEEEECCCcHH
Confidence 3468999999999999999999984 222333333333322 2222 334689999999543
No 300
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.10 E-value=5e-06 Score=76.58 Aligned_cols=85 Identities=14% Similarity=0.106 Sum_probs=58.4
Q ss_pred hcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHc-----------cCCCEEEEe
Q 022351 42 RMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQ-----------QNCPSFGVN 110 (298)
Q Consensus 42 ~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~-----------~~~~vi~iS 110 (298)
.+..+|++++|+|+...... ..+... ....|.++|+||+|+.+........+.+.. .+.+++++|
T Consensus 189 ~~~~aD~vl~V~d~~~~~~~--~~l~~~--~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iS 264 (355)
T 3p32_A 189 VANMVDTFVLLTLARTGDQL--QGIKKG--VLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMS 264 (355)
T ss_dssp HHTTCSEEEEEEESSTTCTT--TTCCTT--SGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEB
T ss_pred HHHhCCEEEEEECCCCCccH--HHHHHh--HhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEE
Confidence 35889999999997643211 111111 135689999999999765443333332221 135799999
Q ss_pred cCCCcCHHHHHHHHHHHHHh
Q 022351 111 SHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 111 a~~~~gi~~L~~~l~~~i~~ 130 (298)
|+++.|+++|.+.|.+.+..
T Consensus 265 A~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 265 AVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp GGGTBSHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999888765
No 301
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.10 E-value=5.7e-06 Score=76.60 Aligned_cols=102 Identities=12% Similarity=0.148 Sum_probs=66.5
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH------HHhccCCCCCCcEEEEEecCCCCChhhHH--HHHH-HH
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD------QLRNHHPFSSSRRILVLNKMDLASPTQFK--EWIT-FF 99 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~------~l~~~l~~~~k~~IiVlNK~DL~~~~~~~--~~~~-~~ 99 (298)
|.++.+..+.+.+.+..+|++++|+|+..+...... .+...+...++|+++|+||+|+.+....+ .... ..
T Consensus 241 p~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~ 320 (364)
T 2qtf_A 241 PPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLS 320 (364)
T ss_dssp CGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHH
Confidence 444444556667789999999999999876411111 11122222578999999999998643111 1111 11
Q ss_pred Hcc---CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 100 DQQ---NCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 100 ~~~---~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
... ..+++++||+++.|+++|++.|.+.+..
T Consensus 321 ~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 321 KELYSPIFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp HHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 122 2357899999999999999999887765
No 302
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.09 E-value=1.5e-06 Score=82.41 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
+...|+|+|.+|+|||||+|.|++.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 4567899999999999999999963
No 303
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.09 E-value=4.7e-07 Score=87.91 Aligned_cols=60 Identities=27% Similarity=0.388 Sum_probs=43.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE--ccCCCEEEEeCCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI--ASHPNIYVLDTPGILP 212 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~--~~~~~~~liDTPGi~~ 212 (298)
+..+|+++|.+|+|||||+|+|++. .......||+|.++..+.+ ..+..+.++||||...
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~------------~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~ 64 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKT------------QVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAA 64 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHH------------HHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC------------CcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHH
Confidence 3468999999999999999999842 1223356778877664333 2344689999999643
No 304
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.08 E-value=3.4e-08 Score=82.91 Aligned_cols=92 Identities=20% Similarity=0.142 Sum_probs=53.1
Q ss_pred HHHHHhcCCCCeEEEEEeCCCCCCccc-HHH-hcc--CCCCCCcEEEEEecCCCCChhhH--HHHHHHHHccCCCEEEEe
Q 022351 37 RAIADRMPLVDIILEVRDARIPFSSEF-DQL-RNH--HPFSSSRRILVLNKMDLASPTQF--KEWITFFDQQNCPSFGVN 110 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l-~~~--l~~~~k~~IiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~iS 110 (298)
......+..+|++++|+|+.++.+... ..+ ..+ ....+.|+++|+||+|+.+.... +.........+.+++.+|
T Consensus 97 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vS 176 (199)
T 3l0i_B 97 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETS 176 (199)
T ss_dssp CCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCC
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEE
Confidence 334457889999999999987533211 111 111 11247899999999999754311 112223334567899999
Q ss_pred cCCCcCHHHHHHHHHHHH
Q 022351 111 SHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 111 a~~~~gi~~L~~~l~~~i 128 (298)
|+++.|+++++++|.+.+
T Consensus 177 A~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 177 AKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp C---HHHHHHHHHHTTTT
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999886544
No 305
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.08 E-value=6.2e-06 Score=70.38 Aligned_cols=90 Identities=26% Similarity=0.162 Sum_probs=58.9
Q ss_pred HhcCCCCeEEEEEeCCCCCCccc-HHH----hccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHccCCCEEEEecCC
Q 022351 41 DRMPLVDIILEVRDARIPFSSEF-DQL----RNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQNCPSFGVNSHN 113 (298)
Q Consensus 41 ~~l~~aDlVl~VvDa~~p~~~~~-~~l----~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iSa~~ 113 (298)
.+...+|.+|+|+|..++.+... ..+ .......+.|+++|.||+||..... .++...+....+.+++.+||++
T Consensus 107 ~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~ 186 (211)
T 2g3y_A 107 HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAV 186 (211)
T ss_dssp CCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCC
Confidence 45778999999999876422111 111 1111114789999999999964311 1221222223456889999999
Q ss_pred CcCHHHHHHHHHHHHHh
Q 022351 114 KDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 114 ~~gi~~L~~~l~~~i~~ 130 (298)
+.|++++++.+.+.+..
T Consensus 187 g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 187 QHNVKELFEGIVRQVRL 203 (211)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999877654
No 306
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.07 E-value=5.7e-07 Score=73.09 Aligned_cols=80 Identities=20% Similarity=0.157 Sum_probs=54.5
Q ss_pred CCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh----hHHHHHHHHHccCCCEEEEecCCCcCHHH
Q 022351 44 PLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT----QFKEWITFFDQQNCPSFGVNSHNKDNVKE 119 (298)
Q Consensus 44 ~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~----~~~~~~~~~~~~~~~vi~iSa~~~~gi~~ 119 (298)
..+|++++|+|+.... ....+...+...+.|+++|.||+|+.... ..+.+.+ ..+.+++.+||+++.|+++
T Consensus 80 ~~~~~~i~v~D~~~~~--~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~SA~~~~~v~~ 154 (165)
T 2wji_A 80 EKPDLVVNIVDATALE--RNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEK---ILGVKVVPLSAAKKMGIEE 154 (165)
T ss_dssp HCCSEEEEEEETTCHH--HHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHH---HHTSCEEECBGGGTBSHHH
T ss_pred CCCCEEEEEecCCchh--HhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHH---HhCCCEEEEEcCCCCCHHH
Confidence 3799999999987521 11112211112479999999999985321 1233333 3357899999999999999
Q ss_pred HHHHHHHHH
Q 022351 120 FLKFLQAHV 128 (298)
Q Consensus 120 L~~~l~~~i 128 (298)
+++.+.+.+
T Consensus 155 l~~~l~~~~ 163 (165)
T 2wji_A 155 LKKAISIAV 163 (165)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999887543
No 307
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.07 E-value=4.1e-06 Score=71.54 Aligned_cols=24 Identities=42% Similarity=0.545 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCchHHHHHHHh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~ 163 (298)
...++|+++|.||||||||+|.+.
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 345899999999999999999998
No 308
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.07 E-value=4e-06 Score=80.19 Aligned_cols=93 Identities=18% Similarity=0.124 Sum_probs=51.8
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-------cccHHHhccCCCCCCc-EEEEEecCCCCC----hhhH--
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFS-------SEFDQLRNHHPFSSSR-RILVLNKMDLAS----PTQF-- 92 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~-------~~~~~l~~~l~~~~k~-~IiVlNK~DL~~----~~~~-- 92 (298)
.-||| .++.+.+...+..+|++|+|+|++.+.. ....+....+...+.| +++++||+|+.+ .+..
T Consensus 127 DtPGh-~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~ 205 (467)
T 1r5b_A 127 DAPGH-KGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKE 205 (467)
T ss_dssp CCCC------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHH
T ss_pred ECCCc-HHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHHHH
Confidence 34777 6788888888999999999999987631 1221211111124666 899999999964 2221
Q ss_pred --HHHHHHHHcc-C------CCEEEEecCCCcCHHHH
Q 022351 93 --KEWITFFDQQ-N------CPSFGVNSHNKDNVKEF 120 (298)
Q Consensus 93 --~~~~~~~~~~-~------~~vi~iSa~~~~gi~~L 120 (298)
++..+++... + .+++++||+++.|+.++
T Consensus 206 i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l 242 (467)
T 1r5b_A 206 CVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR 242 (467)
T ss_dssp HHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred HHHHHHHHHHHhcCCCccCCceEEecccccccccccc
Confidence 2233333333 3 45899999999998753
No 309
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.06 E-value=3.7e-06 Score=76.69 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=34.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGIL 211 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~ 211 (298)
..++|+++|.+|||||||+|+|.+ ...... .| |.......+. ....+.|+||||-.
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~-----------~~~~~~--~p--T~~~~~~~~~~~~~~l~i~Dt~G~~ 220 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKL-----------GEIVTT--IP--TIGFNVETVEYKNISFTVWDVGGQD 220 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCS-----------SCCEEE--EE--ETTEEEEEEEETTEEEEEEECC---
T ss_pred CcceEEEECCCCccHHHHHHHHhC-----------CCCCCc--cc--ccceEEEEEecCcEEEEEEECCCCH
Confidence 456999999999999999999983 222222 22 3333322222 22358899999943
No 310
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.06 E-value=3.5e-07 Score=75.56 Aligned_cols=97 Identities=12% Similarity=0.149 Sum_probs=61.9
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc------HHHhccCCCCCCcEEEEEecCCCCChh------------
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF------DQLRNHHPFSSSRRILVLNKMDLASPT------------ 90 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~------~~l~~~l~~~~k~~IiVlNK~DL~~~~------------ 90 (298)
||+ .+........+..+|++++|+|+..+.+..+ ..+... ..+.|+++|.||+|+.+..
T Consensus 63 ~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 139 (184)
T 1m7b_A 63 SGS-PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQT 139 (184)
T ss_dssp CCS-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCC
T ss_pred CCC-hhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccC
Confidence 444 3333334467899999999999986532221 112222 2478999999999996421
Q ss_pred --hHHHHHHHHHccC-CCEEEEecC-CCcCHHHHHHHHHHHH
Q 022351 91 --QFKEWITFFDQQN-CPSFGVNSH-NKDNVKEFLKFLQAHV 128 (298)
Q Consensus 91 --~~~~~~~~~~~~~-~~vi~iSa~-~~~gi~~L~~~l~~~i 128 (298)
..++..++.+..+ .+++.+||+ ++.|++++++.+.+.+
T Consensus 140 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 140 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp CCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 1122222222334 578999998 6899999999887654
No 311
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.02 E-value=3.7e-06 Score=77.73 Aligned_cols=25 Identities=40% Similarity=0.517 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++|+++|.+|+|||||+|+|++
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTT
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhC
Confidence 4568999999999999999999975
No 312
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.02 E-value=1.3e-06 Score=73.86 Aligned_cols=92 Identities=13% Similarity=0.169 Sum_probs=59.9
Q ss_pred HHHHHHHhcCCCCeEEEEEeCCCCCCccc------HHHhccCCCCCCcEEEEEecCCCCChh--------------hHHH
Q 022351 35 ATRAIADRMPLVDIILEVRDARIPFSSEF------DQLRNHHPFSSSRRILVLNKMDLASPT--------------QFKE 94 (298)
Q Consensus 35 ~~~~i~~~l~~aDlVl~VvDa~~p~~~~~------~~l~~~l~~~~k~~IiVlNK~DL~~~~--------------~~~~ 94 (298)
........+..+|++|+|+|+..+.+..+ ..+... ..+.|+++|.||+|+.+.. ..++
T Consensus 89 ~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 166 (205)
T 1gwn_A 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQ 166 (205)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH
T ss_pred hhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHH
Confidence 33334467899999999999986532211 112222 1478999999999996421 1122
Q ss_pred HHHHHHccC-CCEEEEecC-CCcCHHHHHHHHHHHH
Q 022351 95 WITFFDQQN-CPSFGVNSH-NKDNVKEFLKFLQAHV 128 (298)
Q Consensus 95 ~~~~~~~~~-~~vi~iSa~-~~~gi~~L~~~l~~~i 128 (298)
..++.+..+ .+++.+||+ ++.|++++++.+.+.+
T Consensus 167 ~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 167 GANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 222222334 578999998 6899999999887654
No 313
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.01 E-value=1.7e-06 Score=85.39 Aligned_cols=92 Identities=12% Similarity=0.116 Sum_probs=60.2
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCC-------CCcccHHHhccCCCCC-CcEEEEEecCCCCCh--hhHH----
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIP-------FSSEFDQLRNHHPFSS-SRRILVLNKMDLASP--TQFK---- 93 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p-------~~~~~~~l~~~l~~~~-k~~IiVlNK~DL~~~--~~~~---- 93 (298)
-||| .+..+.+...+..+|++|+|+|++.+ ......+...++...+ +++++|+||+|+.+. ...+
T Consensus 252 TPG~-e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~~ 330 (611)
T 3izq_1 252 APGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKS 330 (611)
T ss_dssp CCSS-SCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHHHHH
T ss_pred CCCC-cccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHHHHHHH
Confidence 3777 67788888899999999999999863 1222222222211234 558999999999862 2222
Q ss_pred HHHHHHHcc-----CCCEEEEecCCCcCHHHH
Q 022351 94 EWITFFDQQ-----NCPSFGVNSHNKDNVKEF 120 (298)
Q Consensus 94 ~~~~~~~~~-----~~~vi~iSa~~~~gi~~L 120 (298)
....++... ..+++++||++|.|+.++
T Consensus 331 ~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 331 KLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 222233222 347899999999998754
No 314
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.01 E-value=5.9e-06 Score=75.66 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
..+..++++|.||+|||||+|.|.+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4577899999999999999999974
No 315
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.01 E-value=6.7e-06 Score=70.51 Aligned_cols=24 Identities=25% Similarity=0.449 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
+.++|+++|.+|||||||++.+..
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECcCCcCHHHHHHHHHh
Confidence 457999999999999999999983
No 316
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.01 E-value=1.7e-06 Score=76.47 Aligned_cols=83 Identities=20% Similarity=0.216 Sum_probs=58.4
Q ss_pred cCCCCeEEEEEeCCCCCCcccHHHhccCCCCC-CcEEEEEecCCCCChhh----HHHHHHHHHccCCCEEEEecCCCcCH
Q 022351 43 MPLVDIILEVRDARIPFSSEFDQLRNHHPFSS-SRRILVLNKMDLASPTQ----FKEWITFFDQQNCPSFGVNSHNKDNV 117 (298)
Q Consensus 43 l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~-k~~IiVlNK~DL~~~~~----~~~~~~~~~~~~~~vi~iSa~~~~gi 117 (298)
..++|++++|+|+..+. .+..+...+...+ .|+++|+||+|+.+... ...+.+ ..+.+++++||+++.|+
T Consensus 79 ~~~~d~vi~v~D~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~---~lg~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLM--RNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRK---ELGVPVIPTNAKKGEGV 153 (271)
T ss_dssp TTCCSEEEEEEEGGGHH--HHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHH---HHSSCEEECBGGGTBTH
T ss_pred ccCCcEEEEEecCCcch--hhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHH---HcCCcEEEEEeCCCCCH
Confidence 48899999999998641 2222211111234 99999999999864321 222222 34789999999999999
Q ss_pred HHHHHHHHHHHHh
Q 022351 118 KEFLKFLQAHVRN 130 (298)
Q Consensus 118 ~~L~~~l~~~i~~ 130 (298)
+++++.+...+..
T Consensus 154 ~~l~~~i~~~~~~ 166 (271)
T 3k53_A 154 EELKRMIALMAEG 166 (271)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887654
No 317
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.24 E-value=8.5e-07 Score=74.45 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++|+++|.+|||||||+|+|..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 4568999999999999999999983
No 318
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.99 E-value=4e-06 Score=78.61 Aligned_cols=69 Identities=19% Similarity=0.237 Sum_probs=43.6
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCC-cc---c-----eeecCCCCeeeeeEEEEEc-cCCCEEEEeCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGK-LR---H-----ATVSPQPGETKDIYSLKIA-SHPNIYVLDTPG 209 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~-~~---~-----~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPG 209 (298)
...++|+++|.+|+|||||+|+|++... ..+. .. . ......+|+|.+.....+. ....+.|+||||
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~----~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG 84 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAA----AENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPG 84 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHH----HSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCC
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhh----hcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCC
Confidence 5678999999999999999999985210 0010 00 0 0001245667666544443 335699999999
Q ss_pred CCC
Q 022351 210 ILP 212 (298)
Q Consensus 210 i~~ 212 (298)
...
T Consensus 85 ~~~ 87 (405)
T 2c78_A 85 HAD 87 (405)
T ss_dssp SGG
T ss_pred hHH
Confidence 753
No 319
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.98 E-value=1.7e-05 Score=69.11 Aligned_cols=93 Identities=12% Similarity=0.162 Sum_probs=60.1
Q ss_pred HHHHHhcCCCCeEEEEEeCCCCCCcccHH-H----hccCCCCCCcEEEEEecCCCCChhhHH---HHHH-------H---
Q 022351 37 RAIADRMPLVDIILEVRDARIPFSSEFDQ-L----RNHHPFSSSRRILVLNKMDLASPTQFK---EWIT-------F--- 98 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~-l----~~~l~~~~k~~IiVlNK~DL~~~~~~~---~~~~-------~--- 98 (298)
..+.+.+.. +++++|+|+.......... . .......+.|.++|+||+|+.+....+ ++++ .
T Consensus 130 ~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~ 208 (262)
T 1yrb_A 130 VRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKL 208 (262)
T ss_dssp HHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhc
Confidence 344456677 9999999987543332211 0 011111368999999999998754322 2211 1
Q ss_pred ---------------HHc--cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 99 ---------------FDQ--QNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 99 ---------------~~~--~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
++. ...+++++||+++.|+++|+++|.+.++.
T Consensus 209 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 209 DPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp CCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 112 22378999999999999999999887765
No 320
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.96 E-value=1.3e-06 Score=83.29 Aligned_cols=92 Identities=17% Similarity=0.143 Sum_probs=59.9
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc-------ccHHHhccCCCCCCc-EEEEEecCCCCC--hhhHH---
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS-------EFDQLRNHHPFSSSR-RILVLNKMDLAS--PTQFK--- 93 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~-------~~~~l~~~l~~~~k~-~IiVlNK~DL~~--~~~~~--- 93 (298)
.-||| .++.+.+...+..+|++|+|+|++.+... ...+...++...+.| +++|+||+|+.+ .+..+
T Consensus 91 DtPGh-~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~ 169 (458)
T 1f60_A 91 DAPGH-RDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIV 169 (458)
T ss_dssp ECCCC-TTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHH
T ss_pred ECCCc-HHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHH
Confidence 34777 67888888999999999999999864211 121211111123555 899999999973 33222
Q ss_pred -HHHHHHHccC-----CCEEEEecCCCcCHHH
Q 022351 94 -EWITFFDQQN-----CPSFGVNSHNKDNVKE 119 (298)
Q Consensus 94 -~~~~~~~~~~-----~~vi~iSa~~~~gi~~ 119 (298)
+..+++...+ .+++++||+++.|+.+
T Consensus 170 ~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 170 KETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp HHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred HHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 2223333333 5799999999998763
No 321
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.95 E-value=2.4e-06 Score=70.58 Aligned_cols=105 Identities=20% Similarity=0.103 Sum_probs=67.3
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc---HHHhccCC-CCCCcEEEEEecCCCCChhhHH----HHHH
Q 022351 26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF---DQLRNHHP-FSSSRRILVLNKMDLASPTQFK----EWIT 97 (298)
Q Consensus 26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~---~~l~~~l~-~~~k~~IiVlNK~DL~~~~~~~----~~~~ 97 (298)
-|....+.+.......++..+|++++|+|...+..+.. ..+..+.. ..+.|+++|.||+|+.+..... ...+
T Consensus 60 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 139 (184)
T 2zej_A 60 VWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITK 139 (184)
T ss_dssp EEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHH
Confidence 46555555554444556778999999999876532221 11111111 1478999999999997654432 2222
Q ss_pred HH-HccCCC----EEEEecCCCc-CHHHHHHHHHHHHHh
Q 022351 98 FF-DQQNCP----SFGVNSHNKD-NVKEFLKFLQAHVRN 130 (298)
Q Consensus 98 ~~-~~~~~~----vi~iSa~~~~-gi~~L~~~l~~~i~~ 130 (298)
.+ +..+.+ ++.+||+++. ++++|.+.+.+.+.+
T Consensus 140 ~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 140 ELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp HTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 23 234555 8899999996 999999998877654
No 322
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.94 E-value=2.3e-05 Score=73.68 Aligned_cols=66 Identities=27% Similarity=0.324 Sum_probs=38.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPP 213 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~ 213 (298)
....++++|.+|+|||||+|+|.+..... .+. .... .+.+|+....++....+++.++|+||+..+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~-----~Gs-I~~~-g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~ 133 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEE-----EGA-AKTG-VVEVTMERHPYKHPNIPNVVFWDLPGIGST 133 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTS-----TTS-CCCC-C----CCCEEEECSSCTTEEEEECCCGGGS
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcc-----Cce-EEEC-CeecceeEEeccccccCCeeehHhhcccch
Confidence 45689999999999999999998632111 011 1111 111233222222222346899999998653
No 323
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.93 E-value=2.3e-06 Score=70.66 Aligned_cols=25 Identities=12% Similarity=0.085 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++|+++|.+|||||||+|.|.+
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHh
Confidence 3468999999999999999998874
No 324
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.92 E-value=2.9e-06 Score=75.38 Aligned_cols=80 Identities=16% Similarity=0.116 Sum_probs=56.0
Q ss_pred CCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh----hHHHHHHHHHccCCCEEEEecCCCcCHHH
Q 022351 44 PLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT----QFKEWITFFDQQNCPSFGVNSHNKDNVKE 119 (298)
Q Consensus 44 ~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~----~~~~~~~~~~~~~~~vi~iSa~~~~gi~~ 119 (298)
..+|++++|+|+... ..+..+...+...+.|+++|+||+|+.... ..+.+.+ ..+.+++++||+++.|+++
T Consensus 79 ~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~---~lg~~vi~~SA~~g~gi~e 153 (272)
T 3b1v_A 79 QRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSY---HLGVPVVATSALKQTGVDQ 153 (272)
T ss_dssp TCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHH---HHTSCEEECBTTTTBSHHH
T ss_pred CCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHH---HcCCCEEEEEccCCCCHHH
Confidence 579999999999753 112222222223589999999999985432 2233333 3467899999999999999
Q ss_pred HHHHHHHHH
Q 022351 120 FLKFLQAHV 128 (298)
Q Consensus 120 L~~~l~~~i 128 (298)
+++.+.+.+
T Consensus 154 l~~~i~~~~ 162 (272)
T 3b1v_A 154 VVKKAAHTT 162 (272)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHHH
Confidence 999987543
No 325
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.92 E-value=4.5e-06 Score=73.93 Aligned_cols=82 Identities=9% Similarity=0.099 Sum_probs=49.8
Q ss_pred CCCeEEEEEeCCC-CCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHH----HHHHHccCCCEEEEecCCCcCHHH
Q 022351 45 LVDIILEVRDARI-PFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEW----ITFFDQQNCPSFGVNSHNKDNVKE 119 (298)
Q Consensus 45 ~aDlVl~VvDa~~-p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~----~~~~~~~~~~vi~iSa~~~~gi~~ 119 (298)
++|++++++|... ++...+..+.+.+.. ++|+++|+||+|+......... .+.+...+++++.+|+.+++|+++
T Consensus 115 r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~ 193 (274)
T 3t5d_A 115 RVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENK 193 (274)
T ss_dssp CCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC----------
T ss_pred ceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHH
Confidence 4788988886553 555555555555543 8999999999999877655433 334445677888899999999999
Q ss_pred HHHHHHHH
Q 022351 120 FLKFLQAH 127 (298)
Q Consensus 120 L~~~l~~~ 127 (298)
+.+.|.+.
T Consensus 194 l~~~l~~~ 201 (274)
T 3t5d_A 194 LVKKIKDR 201 (274)
T ss_dssp -CHHHHHT
T ss_pred HHHHHhcC
Confidence 98888654
No 326
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.92 E-value=9.8e-06 Score=75.76 Aligned_cols=66 Identities=23% Similarity=0.275 Sum_probs=42.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCcc--------ceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLR--------HATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGI 210 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~--------~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi 210 (298)
+.++|+++|.+|+|||||+|+|++... ..+... ........|.|.+...+.+. ....+.|+||||.
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~----~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~ 76 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILA----EGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGH 76 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHH----HTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhh----hcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCCh
Confidence 357999999999999999999985210 001000 01111246778776654443 3456999999997
No 327
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.92 E-value=1.1e-05 Score=78.32 Aligned_cols=62 Identities=18% Similarity=0.105 Sum_probs=47.5
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh
Q 022351 27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP 89 (298)
Q Consensus 27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~ 89 (298)
.-||| ..+...+...+..+|.+|+|+|+..+.......+...+...+.|+++++||+|+...
T Consensus 88 DTPG~-~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 88 DTPGH-EDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CCCCS-TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred ECCCC-hhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence 34777 455566778899999999999999876655555555544568999999999999753
No 328
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.92 E-value=2.3e-06 Score=82.34 Aligned_cols=60 Identities=23% Similarity=0.328 Sum_probs=41.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILP 212 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~ 212 (298)
+..+|+++|.+|+|||||+|+|++.. ...+..+|+|.++..+.+. .+..+.++||||...
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~------------v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~ 63 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK------------VASGEAGGITQHIGAYHVETENGMITFLDTPGHAA 63 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH------------HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC------------CccccCCCeeEeEEEEEEEECCEEEEEEECCCcHH
Confidence 45689999999999999999998421 1122345666665533332 344689999999754
No 329
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.91 E-value=7.9e-06 Score=74.85 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
..+..++++|.||+|||||+|.|.+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4567899999999999999999974
No 330
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.91 E-value=1.4e-05 Score=75.22 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=38.8
Q ss_pred eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC---CCEEEEeCCCCCC
Q 022351 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH---PNIYVLDTPGILP 212 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~---~~~~liDTPGi~~ 212 (298)
++++++|.+|+|||||+|+|++.... + .......|+.++....+..... +.+.++||||+..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~-------g-~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFE-------G-EPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC---------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCcccc-------C-CcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh
Confidence 45999999999999999999853100 0 1112224566665444333222 2588999999975
No 331
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.89 E-value=2.2e-05 Score=66.99 Aligned_cols=101 Identities=8% Similarity=-0.067 Sum_probs=62.3
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-cccHHH---hccCCC----CCCcEEEEEecC-CCCChhhHHHHHHH
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFS-SEFDQL---RNHHPF----SSSRRILVLNKM-DLASPTQFKEWITF 98 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~-~~~~~l---~~~l~~----~~k~~IiVlNK~-DL~~~~~~~~~~~~ 98 (298)
--|...+....++.+..++|.||||||+.+... ..-.++ ..++.. .+.|++|+.||. |+...-...+..+.
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~ 187 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 187 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence 344555666667789999999999999976422 112223 333321 467999999996 67543333344444
Q ss_pred HH----ccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351 99 FD----QQNCPSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 99 ~~----~~~~~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
+. ...+.+..+||.+|+|+.+-++||.+.+
T Consensus 188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 32 2345688999999999999999987554
No 332
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.89 E-value=4.6e-05 Score=68.42 Aligned_cols=60 Identities=22% Similarity=0.226 Sum_probs=37.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCC--CEEEEeCCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHP--NIYVLDTPGILP 212 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~--~~~liDTPGi~~ 212 (298)
...++|+++|.+|||||||+|.+.. .. .....++||.+.....+. .+. .+.++||||...
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~-----------~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 215 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTT-----------NA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 215 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHH-----------SC--CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGG
T ss_pred cceeEEEEECCCCCChHHHHHHHHh-----------CC--CCcccCCcccceeEEEEEECCEEEEEEEEeCCCchh
Confidence 4568999999999999999999983 11 122233444433322221 122 355999999754
No 333
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.87 E-value=3.7e-06 Score=80.23 Aligned_cols=72 Identities=31% Similarity=0.383 Sum_probs=42.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhh-cchhh----------hhcCCc--cce------eecCCCCeeeeeEEEEEc-cC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQI-GRITA----------AEKGKL--RHA------TVSPQPGETKDIYSLKIA-SH 199 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~----------~~~~~~--~~~------~~~~~pg~T~~~~~~~~~-~~ 199 (298)
...++|+++|.+|+|||||+|+|+.. +.+.. .+.|.+ +.+ .....+|.|.+.....+. ..
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 34689999999999999999999842 11110 000110 000 011136777666543332 23
Q ss_pred CCEEEEeCCCCC
Q 022351 200 PNIYVLDTPGIL 211 (298)
Q Consensus 200 ~~~~liDTPGi~ 211 (298)
..+.|+||||..
T Consensus 85 ~~~~iiDtPGh~ 96 (458)
T 1f60_A 85 YQVTVIDAPGHR 96 (458)
T ss_dssp EEEEEEECCCCT
T ss_pred ceEEEEECCCcH
Confidence 368999999964
No 334
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.86 E-value=1.2e-06 Score=85.09 Aligned_cols=88 Identities=22% Similarity=0.153 Sum_probs=57.6
Q ss_pred HhcCCCCeEEEEEeCCCCCCcccHHHhccCC--CCCCcEEEEEecCCCCChhh--HHHHHHHHHccCCCEEEEecCCCcC
Q 022351 41 DRMPLVDIILEVRDARIPFSSEFDQLRNHHP--FSSSRRILVLNKMDLASPTQ--FKEWITFFDQQNCPSFGVNSHNKDN 116 (298)
Q Consensus 41 ~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~--~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iSa~~~~g 116 (298)
..+..+|++|+|+|++.. .....+...+. ..+.|+++|+||+|+.+... .+...+.+...+.+++.+||+++.|
T Consensus 117 ~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~g 194 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDG 194 (535)
T ss_dssp HHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----
T ss_pred HHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccC
Confidence 456679999999999753 22222222211 24689999999999975432 3344444555677899999999999
Q ss_pred HHHHHHHHHHHHHh
Q 022351 117 VKEFLKFLQAHVRN 130 (298)
Q Consensus 117 i~~L~~~l~~~i~~ 130 (298)
+++|++.+.+.+.+
T Consensus 195 i~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 195 VESIAKSLKSAVLH 208 (535)
T ss_dssp CTTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887654
No 335
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.86 E-value=2.5e-07 Score=89.89 Aligned_cols=100 Identities=19% Similarity=0.153 Sum_probs=70.3
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHH----cc
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFD----QQ 102 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~----~~ 102 (298)
||| ..+...+...+..+|++|+|+|+..+......+....+...+.|+++++||+|+.+.. .....+..+. ..
T Consensus 60 PGh-e~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~ 138 (537)
T 3izy_P 60 PGH-AAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDY 138 (537)
T ss_dssp SSS-CCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCS
T ss_pred CCh-HHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhc
Confidence 677 5555556667899999999999998776655544444334688999999999996432 1111111111 11
Q ss_pred --CCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 103 --NCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 103 --~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
..+++++||+++.|+++|++.+...+.
T Consensus 139 ~~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 139 GGDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp SSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred CCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 236889999999999999999987765
No 336
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.85 E-value=2.3e-05 Score=73.72 Aligned_cols=90 Identities=19% Similarity=0.258 Sum_probs=65.0
Q ss_pred HhcCCCCeEEEEEeCC-CCCCccc---HHHhccCC-CCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCc
Q 022351 41 DRMPLVDIILEVRDAR-IPFSSEF---DQLRNHHP-FSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKD 115 (298)
Q Consensus 41 ~~l~~aDlVl~VvDa~-~p~~~~~---~~l~~~l~-~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~ 115 (298)
+.+++++.+++|+|+. .++.... .++..+.. ...+|.++|+||+|+......+.+.+.+...+.+++.+||++++
T Consensus 231 ~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~ 310 (416)
T 1udx_A 231 RHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGA 310 (416)
T ss_dssp HHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCT
T ss_pred HHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCcc
Confidence 4567899999999996 2221111 12222210 13689999999999987654555666665567789999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 022351 116 NVKEFLKFLQAHVRN 130 (298)
Q Consensus 116 gi~~L~~~l~~~i~~ 130 (298)
|+++|++.|.+.+.+
T Consensus 311 gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 311 GLPALKEALHALVRS 325 (416)
T ss_dssp THHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988865
No 337
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.85 E-value=5.1e-07 Score=88.84 Aligned_cols=99 Identities=15% Similarity=0.113 Sum_probs=57.9
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-------CcccHHHhccCCCCCCc-EEEEEecCCCCC--hhhHH----H
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPF-------SSEFDQLRNHHPFSSSR-RILVLNKMDLAS--PTQFK----E 94 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~-------~~~~~~l~~~l~~~~k~-~IiVlNK~DL~~--~~~~~----~ 94 (298)
||| .++...+...+..+|++|+|+|+..+. .....+...++...+.| +|+|+||+|+.+ .+... .
T Consensus 263 PGh-~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~i~~e 341 (592)
T 3mca_A 263 PGH-RDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNI 341 (592)
T ss_dssp ESS-SEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHHHHHH
T ss_pred CCh-HHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHHHHHHHHH
Confidence 666 345555556788899999999998643 33333222222224565 899999999975 33222 3
Q ss_pred HHHHH-HccCC-----CEEEEecCCCcCHH--------------HHHHHHHHHH
Q 022351 95 WITFF-DQQNC-----PSFGVNSHNKDNVK--------------EFLKFLQAHV 128 (298)
Q Consensus 95 ~~~~~-~~~~~-----~vi~iSa~~~~gi~--------------~L~~~l~~~i 128 (298)
+.+++ ...++ +++++||++|.|+. .|++.|...+
T Consensus 342 l~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 342 VSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp HHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred HHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 33344 33444 58999999999997 6777776543
No 338
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.84 E-value=7.3e-06 Score=78.68 Aligned_cols=64 Identities=25% Similarity=0.368 Sum_probs=34.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGI 210 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi 210 (298)
+.++|+++|.+|+|||||+|+|++..... .-........+|+|.+... +.+ .+..+.++||||.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~-----~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh 83 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTS-----AHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGH 83 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC-------------------------CCCEEEE-TTEEEEECCCSSH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCccc-----ccccccccccCccEEecceEEEEE-CCEEEEEEECCCh
Confidence 35799999999999999999998421000 0011223455677776542 323 2346899999996
No 339
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.84 E-value=3.9e-05 Score=68.75 Aligned_cols=96 Identities=20% Similarity=0.135 Sum_probs=62.8
Q ss_pred HHHHHHHhcCCCCeEEEEEeC-CCCCCccc-HHHhccCCCCCCcEEEEEecCCCCChhh-HHHHHHH-HHccCCCEEEEe
Q 022351 35 ATRAIADRMPLVDIILEVRDA-RIPFSSEF-DQLRNHHPFSSSRRILVLNKMDLASPTQ-FKEWITF-FDQQNCPSFGVN 110 (298)
Q Consensus 35 ~~~~i~~~l~~aDlVl~VvDa-~~p~~~~~-~~l~~~l~~~~k~~IiVlNK~DL~~~~~-~~~~~~~-~~~~~~~vi~iS 110 (298)
....+..++..+|++++|+|+ ..+....+ ..+...+...++|+++|+||+|+.+... ..++++. +...+..+++++
T Consensus 157 ~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~ 236 (315)
T 1jwy_B 157 IRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVI 236 (315)
T ss_dssp HHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECC
T ss_pred HHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEe
Confidence 445667789999999999997 44444333 2455555456899999999999986543 2222221 111113455555
Q ss_pred c---CC---CcCHHHHHHHHHHHHHh
Q 022351 111 S---HN---KDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 111 a---~~---~~gi~~L~~~l~~~i~~ 130 (298)
+ .+ +.|+.++++.+.+.++.
T Consensus 237 ~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 237 NRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp CCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred cCChhhhccCCCHHHHHHHHHHHHhC
Confidence 4 44 68899999998888765
No 340
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.84 E-value=2.2e-06 Score=70.57 Aligned_cols=82 Identities=20% Similarity=0.189 Sum_probs=56.7
Q ss_pred CCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh----hHHHHHHHHHccCCCEEEEecCCCcCHHH
Q 022351 44 PLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT----QFKEWITFFDQQNCPSFGVNSHNKDNVKE 119 (298)
Q Consensus 44 ~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~----~~~~~~~~~~~~~~~vi~iSa~~~~gi~~ 119 (298)
..+|++++|+|+... .....+...+...+.|+++|+||+|+.... ..+.+.+ ..+.+++.+||+++.|+++
T Consensus 84 ~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~v~~ 158 (188)
T 2wjg_A 84 EKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEK---ILGVKVVPLSAAKKMGIEE 158 (188)
T ss_dssp HCCSEEEEEEEGGGH--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHH---HHTSCEEECBGGGTBSHHH
T ss_pred cCCCEEEEEecchhH--HHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHH---HhCCCeEEEEecCCCCHHH
Confidence 358999999998641 111122222223578999999999985432 2233333 3367899999999999999
Q ss_pred HHHHHHHHHHh
Q 022351 120 FLKFLQAHVRN 130 (298)
Q Consensus 120 L~~~l~~~i~~ 130 (298)
+++.+.+.+.+
T Consensus 159 l~~~i~~~~~~ 169 (188)
T 2wjg_A 159 LKKAISIAVKD 169 (188)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999877654
No 341
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.81 E-value=3.8e-05 Score=76.93 Aligned_cols=94 Identities=14% Similarity=0.114 Sum_probs=65.2
Q ss_pred HHHHHhcCCCCeEEEEEeCCCCCCcccHH-HhccCCCCCCcEEEEEecCCCCChh--------hHHH----HH----HHH
Q 022351 37 RAIADRMPLVDIILEVRDARIPFSSEFDQ-LRNHHPFSSSRRILVLNKMDLASPT--------QFKE----WI----TFF 99 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~-l~~~l~~~~k~~IiVlNK~DL~~~~--------~~~~----~~----~~~ 99 (298)
..+..++..+|+||+|+|+..+.+..+.. +...+...++|+++|+||+|+.... ..+. .. ..+
T Consensus 192 ~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l 271 (695)
T 2j69_A 192 ELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANL 271 (695)
T ss_dssp HHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHH
Confidence 45567888999999999998876655443 3334444578999999999997542 1111 11 112
Q ss_pred Hc---------cCCCEEEEecC--------------CCcCHHHHHHHHHHHHHh
Q 022351 100 DQ---------QNCPSFGVNSH--------------NKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 100 ~~---------~~~~vi~iSa~--------------~~~gi~~L~~~l~~~i~~ 130 (298)
.. ...+++++||+ ++.|+++|.+.+.+.+..
T Consensus 272 ~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 272 AEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp GGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred HHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 11 12368999999 999999999988876643
No 342
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.81 E-value=1.1e-05 Score=72.73 Aligned_cols=88 Identities=11% Similarity=0.090 Sum_probs=55.5
Q ss_pred HHHHHhcCCCCeEEEEEeCCCCCCcccH-HHhccCC-----CCCCcEEEEEecCCCCChhhH--------HHHHHHHHcc
Q 022351 37 RAIADRMPLVDIILEVRDARIPFSSEFD-QLRNHHP-----FSSSRRILVLNKMDLASPTQF--------KEWITFFDQQ 102 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~-~l~~~l~-----~~~k~~IiVlNK~DL~~~~~~--------~~~~~~~~~~ 102 (298)
......+..+|++|+|+|+..+.+..+. .+..++. ..+.|+++|+||+|+.+.+.. +...+..+..
T Consensus 72 ~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~ 151 (307)
T 3r7w_A 72 KQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEF 151 (307)
T ss_dssp TTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHc
Confidence 3445667899999999999876433221 1111111 247999999999999874322 2222333344
Q ss_pred C---CCEEEEecCCCcCHHHHHHHHH
Q 022351 103 N---CPSFGVNSHNKDNVKEFLKFLQ 125 (298)
Q Consensus 103 ~---~~vi~iSa~~~~gi~~L~~~l~ 125 (298)
+ .+++.+||++ .++.+++..+.
T Consensus 152 g~~~~~~~~tSa~~-~~i~e~~~~iv 176 (307)
T 3r7w_A 152 GFPNLIGFPTSIWD-ESLYKAWSQIV 176 (307)
T ss_dssp TCCSCEEEECCTTS-SHHHHHHHHHH
T ss_pred CCCCeEEEEeeecC-ChHHHHHHHHH
Confidence 5 5789999999 66666555443
No 343
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.81 E-value=1.3e-05 Score=74.45 Aligned_cols=49 Identities=22% Similarity=0.367 Sum_probs=35.4
Q ss_pred EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILP 212 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~ 212 (298)
+|+++|.+|+|||||+|+|+. .|.|.+.....+. .+..+.++||||...
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~--------------------~giTi~~~~~~~~~~~~~i~iiDtPGh~~ 72 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK--------------------KGTSSDITMYNNDKEGRNMVFVDAHSYPK 72 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE--------------------EEEESSSEEEEECSSSSEEEEEECTTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHh--------------------CCEEEEeeEEEEecCCeEEEEEECCChHH
Confidence 899999999999999999971 1234444333332 334689999999754
No 344
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.80 E-value=1.9e-05 Score=72.63 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.....|+++|.||||||||+|.|..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999963
No 345
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.80 E-value=1.8e-05 Score=74.84 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++|+++|.+|+|||||+|+|+.
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~ 46 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLH 46 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCHHHHHHHHHh
Confidence 3458999999999999999999984
No 346
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.78 E-value=6e-07 Score=86.46 Aligned_cols=98 Identities=17% Similarity=0.149 Sum_probs=64.7
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh--hhHHHHHHH---H-Hc
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP--TQFKEWITF---F-DQ 101 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~--~~~~~~~~~---~-~~ 101 (298)
.||| ..+...+...+..+|++++|+|+.++......+....+...+.|+++++||+|+.+. +.+...+.. + +.
T Consensus 58 TPGh-e~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~ 136 (501)
T 1zo1_I 58 TPGH-AAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEE 136 (501)
T ss_dssp CCTT-TCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTC
T ss_pred CCCc-HHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHH
Confidence 3677 445555556788999999999998865544433333322357899999999999642 111110000 0 01
Q ss_pred c--CCCEEEEecCCCcCHHHHHHHHHH
Q 022351 102 Q--NCPSFGVNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 102 ~--~~~vi~iSa~~~~gi~~L~~~l~~ 126 (298)
. ..+++++||+++.|+++|++.+..
T Consensus 137 ~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 137 WGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp CSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred hCCCccEEEEeeeeccCcchhhhhhhh
Confidence 1 247899999999999999998753
No 347
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.77 E-value=2e-05 Score=69.84 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCchHHHHHHHhhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
++++++|.+|+|||||+|+|++.
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999864
No 348
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.76 E-value=2.7e-05 Score=65.95 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
....++++|.+|||||||+|.|+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999984
No 349
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.76 E-value=6.6e-05 Score=62.45 Aligned_cols=89 Identities=25% Similarity=0.138 Sum_probs=57.8
Q ss_pred hcCCCCeEEEEEeCCCCCCccc-HH----HhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHccCCCEEEEecCCC
Q 022351 42 RMPLVDIILEVRDARIPFSSEF-DQ----LRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQNCPSFGVNSHNK 114 (298)
Q Consensus 42 ~l~~aDlVl~VvDa~~p~~~~~-~~----l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iSa~~~ 114 (298)
++..+|.+++|+|..++.+... .. +.......+.|+++|.||+|+..... .+.........+.+++.+||+++
T Consensus 77 ~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g 156 (192)
T 2cjw_A 77 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQ 156 (192)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTT
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccC
Confidence 4556899999999876422111 11 22221224789999999999964321 12221222234567899999999
Q ss_pred cCHHHHHHHHHHHHHh
Q 022351 115 DNVKEFLKFLQAHVRN 130 (298)
Q Consensus 115 ~gi~~L~~~l~~~i~~ 130 (298)
.|++++++.+.+.+..
T Consensus 157 ~~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 157 HNVKELFEGIVRQVRL 172 (192)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999998876643
No 350
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.76 E-value=1.8e-05 Score=74.20 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++|+++|.+|+|||||+|+|++
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g 32 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTG 32 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhC
Confidence 4468999999999999999999984
No 351
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.75 E-value=3.3e-05 Score=72.26 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.+.++|+++|.+|+|||||+|+|++
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~ 30 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITG 30 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 5678999999999999999999984
No 352
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.75 E-value=1.3e-05 Score=78.22 Aligned_cols=59 Identities=20% Similarity=0.178 Sum_probs=48.6
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCC
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLAS 88 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~ 88 (298)
||| ..+...+.+.+.-+|.+|.|+||..+....-..+.+.+...+.|+++++||+|...
T Consensus 108 PGH-vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 108 PGH-QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREA 166 (548)
T ss_dssp CCG-GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCC
T ss_pred CCc-HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchh
Confidence 888 56777788888899999999999988877766655554457899999999999854
No 353
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.75 E-value=2.8e-05 Score=72.90 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++|+++|.+|+|||||+|+|.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g 30 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTG 30 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHS
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhC
Confidence 4568999999999999999999984
No 354
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.74 E-value=1.4e-05 Score=80.45 Aligned_cols=90 Identities=16% Similarity=0.168 Sum_probs=63.0
Q ss_pred HHHHHhc-CCCCeEEEEEeCCCCCCcccH-HHhccCCCCCCcEEEEEecCCCCChhhH-HHHHH--HHH-ccCC-CEEEE
Q 022351 37 RAIADRM-PLVDIILEVRDARIPFSSEFD-QLRNHHPFSSSRRILVLNKMDLASPTQF-KEWIT--FFD-QQNC-PSFGV 109 (298)
Q Consensus 37 ~~i~~~l-~~aDlVl~VvDa~~p~~~~~~-~l~~~l~~~~k~~IiVlNK~DL~~~~~~-~~~~~--~~~-~~~~-~vi~i 109 (298)
+.+..++ ..+|+|++|+|++.++...+. .+...+...++|+++|+||+|+++.... ..... .+. ..++ +++++
T Consensus 178 ~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~i 257 (772)
T 3zvr_A 178 DMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNR 257 (772)
T ss_dssp HHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCC
T ss_pred HHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEe
Confidence 3444554 689999999999987776665 4666555568999999999999865432 11111 000 1132 57889
Q ss_pred ecCCCcCHHHHHHHHHH
Q 022351 110 NSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 110 Sa~~~~gi~~L~~~l~~ 126 (298)
||+++.|+++|.+.+.+
T Consensus 258 SA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 258 SQKDIDGKKDITAALAA 274 (772)
T ss_dssp CCEESSSSEEHHHHHHH
T ss_pred cccccccchhHHHHHHH
Confidence 99999999888888775
No 355
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.74 E-value=1.2e-05 Score=75.97 Aligned_cols=73 Identities=21% Similarity=0.292 Sum_probs=37.1
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhh-cchhhh----------hcCCc--------cceeecCCCCeeeeeEEEEEc-cC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQI-GRITAA----------EKGKL--------RHATVSPQPGETKDIYSLKIA-SH 199 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~----------~~~~~--------~~~~~~~~pg~T~~~~~~~~~-~~ 199 (298)
.+.++|+++|.+|+|||||+|+|+.. +.+... +.|.+ ........+|+|.+.....+. ..
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 35689999999999999999999842 111100 00000 000011246777776543332 33
Q ss_pred CCEEEEeCCCCCC
Q 022351 200 PNIYVLDTPGILP 212 (298)
Q Consensus 200 ~~~~liDTPGi~~ 212 (298)
..+.|+||||...
T Consensus 84 ~~~~iiDtpG~~~ 96 (435)
T 1jny_A 84 YFFTIIDAPGHRD 96 (435)
T ss_dssp CEEEECCCSSSTT
T ss_pred eEEEEEECCCcHH
Confidence 4699999999754
No 356
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.73 E-value=1.7e-05 Score=79.46 Aligned_cols=61 Identities=20% Similarity=0.155 Sum_probs=44.5
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP 89 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~ 89 (298)
-||| ..+...+...+..+|.+|+|+|+..+.......+...+...+.|+++|+||+|+...
T Consensus 84 TPG~-~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 84 TPGH-VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CCSS-TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred CcCc-cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 3677 445566677788899999999999876655444333332358999999999999753
No 357
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.72 E-value=9.8e-06 Score=72.07 Aligned_cols=95 Identities=13% Similarity=0.124 Sum_probs=63.2
Q ss_pred HHHHHHHhcCCCCeEE-EEEeCCCCCCcccH-HHhccCCCCCCcEEEEEecCCCCChhh-HHHHHHH-HHcc--CC-CEE
Q 022351 35 ATRAIADRMPLVDIIL-EVRDARIPFSSEFD-QLRNHHPFSSSRRILVLNKMDLASPTQ-FKEWITF-FDQQ--NC-PSF 107 (298)
Q Consensus 35 ~~~~i~~~l~~aDlVl-~VvDa~~p~~~~~~-~l~~~l~~~~k~~IiVlNK~DL~~~~~-~~~~~~~-~~~~--~~-~vi 107 (298)
....+..++..++.++ +|+|+..++...+. .+...+...+.|+++|+||+|+.+... ...+++. +... ++ +++
T Consensus 151 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~ 230 (299)
T 2aka_B 151 IRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVV 230 (299)
T ss_dssp HHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECC
T ss_pred HHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEE
Confidence 4455667888888665 79999876655442 344444446799999999999986532 2222211 0011 22 567
Q ss_pred EEecCCCcCHHHHHHHHHHHHH
Q 022351 108 GVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 108 ~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
.+||+++.|++++.+.+.+..+
T Consensus 231 ~~SA~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 231 NRSQKDIDGKKDITAALAAERK 252 (299)
T ss_dssp CCCCBCTTSCBCHHHHHHHHHH
T ss_pred CCChhhccccccHHHHHHHHHH
Confidence 8999999999999988876443
No 358
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.71 E-value=8.6e-06 Score=79.01 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHHh
Q 022351 142 TVTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~ 163 (298)
..+|+++|.+|+|||||+|+|+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll 34 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLL 34 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHH
Confidence 4589999999999999999997
No 359
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.70 E-value=1.1e-05 Score=70.58 Aligned_cols=93 Identities=16% Similarity=0.199 Sum_probs=60.2
Q ss_pred HHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCC-----CCCcEEEEEe-cCCCCChhhHHH------------HHH
Q 022351 36 TRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPF-----SSSRRILVLN-KMDLASPTQFKE------------WIT 97 (298)
Q Consensus 36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~-----~~k~~IiVlN-K~DL~~~~~~~~------------~~~ 97 (298)
.+.+...+..+|++|+|+|+.. +......+..++.. ...|.++|+| |+|+.+.. ... +.+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHH
Confidence 4445567899999999999975 34333333222211 1568888888 99997542 222 222
Q ss_pred HHHcc-C-CCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 98 FFDQQ-N-CPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 98 ~~~~~-~-~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.+... . +..+++||+++.|++++++.|.+.+..
T Consensus 174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 22111 0 222678999999999999999888765
No 360
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.69 E-value=3.8e-06 Score=77.50 Aligned_cols=106 Identities=12% Similarity=0.054 Sum_probs=70.7
Q ss_pred CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC---------cccH---HHhccCC---CCCCcEEEEEecCCCCCh
Q 022351 25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFS---------SEFD---QLRNHHP---FSSSRRILVLNKMDLASP 89 (298)
Q Consensus 25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~---------~~~~---~l~~~l~---~~~k~~IiVlNK~DL~~~ 89 (298)
.-|..|++.+....+..+...++.||+|+|...... .... .+..++. ..+.|++|++||+||...
T Consensus 196 ~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ 275 (353)
T 1cip_A 196 KMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEE 275 (353)
T ss_dssp EEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHH
T ss_pred EEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhh
Confidence 368877777777777789999999999999876311 1111 1222222 146899999999998521
Q ss_pred h-----------------hHHHHHHHHH-----------ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 90 T-----------------QFKEWITFFD-----------QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 90 ~-----------------~~~~~~~~~~-----------~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
. ..++..+++. ..++.++.+||+++.|++++++++.+.+..
T Consensus 276 ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 276 KIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp HHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence 1 1222233322 134467889999999999999998876643
No 361
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.69 E-value=0.00013 Score=60.99 Aligned_cols=87 Identities=15% Similarity=0.042 Sum_probs=62.1
Q ss_pred cCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhH----HHHHHHHHccC--CCEEEEecCCCcC
Q 022351 43 MPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQF----KEWITFFDQQN--CPSFGVNSHNKDN 116 (298)
Q Consensus 43 l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~----~~~~~~~~~~~--~~vi~iSa~~~~g 116 (298)
...+|.+++|+|+..+.......+..++...+.|.++|.||+|+.+..+. ......+.+.. ...+++|++++.+
T Consensus 106 ~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~ 185 (210)
T 1pui_A 106 RQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQG 185 (210)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBS
T ss_pred hhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCC
Confidence 46889999999998876544434444433357899999999999875422 23333333333 3578999999999
Q ss_pred HHHHHHHHHHHHH
Q 022351 117 VKEFLKFLQAHVR 129 (298)
Q Consensus 117 i~~L~~~l~~~i~ 129 (298)
++++++.|.+.+.
T Consensus 186 ~~~l~~~l~~~~~ 198 (210)
T 1pui_A 186 VDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987654
No 362
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.67 E-value=7.1e-05 Score=75.05 Aligned_cols=60 Identities=20% Similarity=0.103 Sum_probs=44.9
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCC
Q 022351 28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLAS 88 (298)
Q Consensus 28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~ 88 (298)
-||| ..+...+...+..+|.+|+|+|+..+.......+...+...+.|+++++||+|+..
T Consensus 89 TPG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 89 TPGH-VDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMG 148 (704)
T ss_pred CCCc-cchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCccc
Confidence 3777 45667777888999999999999977654444433333345799999999999864
No 363
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.67 E-value=1.7e-05 Score=79.12 Aligned_cols=58 Identities=14% Similarity=0.063 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCC
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLA 87 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~ 87 (298)
||| ..+...+...+..+|.+++|+|+..........+...+...+.|+++|+||+|+.
T Consensus 82 pG~-~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 82 PGY-GDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp CCS-GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred CCc-cchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 777 4556677788889999999999987766555544444333579999999999986
No 364
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.66 E-value=3.6e-05 Score=74.68 Aligned_cols=72 Identities=19% Similarity=0.263 Sum_probs=36.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhh-cchhhh---hcCCccceeec------CCCCeeeeeEEEEEc-cCCCEEEEeCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQI-GRITAA---EKGKLRHATVS------PQPGETKDIYSLKIA-SHPNIYVLDTPG 209 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~---~~~~~~~~~~~------~~pg~T~~~~~~~~~-~~~~~~liDTPG 209 (298)
...+|+++|.+|+|||||+|+|+.. +.+... ..+.....++. ...|+|.......+. .+..+.|+||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 3469999999999999999999852 111100 00000001111 244555443332222 233689999999
Q ss_pred CCC
Q 022351 210 ILP 212 (298)
Q Consensus 210 i~~ 212 (298)
...
T Consensus 92 ~~d 94 (529)
T 2h5e_A 92 HED 94 (529)
T ss_dssp STT
T ss_pred Chh
Confidence 855
No 365
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.64 E-value=4e-05 Score=66.78 Aligned_cols=89 Identities=15% Similarity=0.103 Sum_probs=58.1
Q ss_pred HhcCCCCeEEEEEeCCCCCCcccHHHhccCCC------CCCcEEEEEecCCCCChhh---H-----HHHHHHHHccCCCE
Q 022351 41 DRMPLVDIILEVRDARIPFSSEFDQLRNHHPF------SSSRRILVLNKMDLASPTQ---F-----KEWITFFDQQNCPS 106 (298)
Q Consensus 41 ~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~------~~k~~IiVlNK~DL~~~~~---~-----~~~~~~~~~~~~~v 106 (298)
.....+|++|+|+|+.. +...+..+.+++.. .+.|++++.||+|+..... + +...+..+..+..+
T Consensus 101 ~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~ 179 (247)
T 3lxw_A 101 LSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRV 179 (247)
T ss_dssp HHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCE
T ss_pred hcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeE
Confidence 34599999999999974 44433333332211 2679999999999965321 1 11222333456667
Q ss_pred EEEecCC-----CcCHHHHHHHHHHHHHh
Q 022351 107 FGVNSHN-----KDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 107 i~iSa~~-----~~gi~~L~~~l~~~i~~ 130 (298)
+.+++.. +.|+++|++.|.+.+.+
T Consensus 180 ~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 180 CAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 7777665 47899999999888875
No 366
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.63 E-value=3e-05 Score=77.60 Aligned_cols=72 Identities=18% Similarity=0.227 Sum_probs=37.5
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhh-cchhhhhcCCccceeecC------CCCeeeeeEEEEE-ccCCCEEEEeCCCCC
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQI-GRITAAEKGKLRHATVSP------QPGETKDIYSLKI-ASHPNIYVLDTPGIL 211 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~~~~~~~~~~~~~------~pg~T~~~~~~~~-~~~~~~~liDTPGi~ 211 (298)
....+|+++|.+|+|||||+|+|+.. +.+..... -....++.+ .+|+|.......+ ..+..+.|+||||..
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~-v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGE-THEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC--------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCcccccc-ccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 34579999999999999999999842 11110000 000011222 3566655443222 223468999999986
Q ss_pred C
Q 022351 212 P 212 (298)
Q Consensus 212 ~ 212 (298)
.
T Consensus 87 d 87 (693)
T 2xex_A 87 D 87 (693)
T ss_dssp S
T ss_pred c
Confidence 5
No 367
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.63 E-value=3.7e-05 Score=69.14 Aligned_cols=24 Identities=42% Similarity=0.533 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
-.++|+++|.+|||||||+|.|++
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHhC
Confidence 457999999999999999999985
No 368
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.61 E-value=1.2e-05 Score=74.31 Aligned_cols=106 Identities=15% Similarity=0.074 Sum_probs=64.7
Q ss_pred CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCC---------CcccH---HHhccCC---CCCCcEEEEEecCCCCCh
Q 022351 25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPF---------SSEFD---QLRNHHP---FSSSRRILVLNKMDLASP 89 (298)
Q Consensus 25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~---------~~~~~---~l~~~l~---~~~k~~IiVlNK~DL~~~ 89 (298)
.-|..|+..+....+..+...++.||+|+|..... ..... .+..++. ..+.|+|+++||+||...
T Consensus 204 ~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ 283 (362)
T 1zcb_A 204 KMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEE 283 (362)
T ss_dssp EEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHH
T ss_pred EEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhh
Confidence 36888877777777778899999999999998621 11111 1222222 146899999999998521
Q ss_pred ------------------hhHHHHHHHH----H-------ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 90 ------------------TQFKEWITFF----D-------QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 90 ------------------~~~~~~~~~~----~-------~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
...++..+++ . ..++.++.+||+++.|++++++.+.+.+..
T Consensus 284 ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 284 KVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp HTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 1123333322 1 123467889999999999999998876643
No 369
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.60 E-value=2e-05 Score=78.93 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP 89 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~ 89 (298)
||| ..+...+...+..+|.+|+|+|+..+.......+...+...+.|+++|+||+|+...
T Consensus 83 PG~-~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 83 PGH-VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CCC-SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred cCC-cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 666 334445566777899999999998876655544433333358999999999999753
No 370
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.59 E-value=1.2e-05 Score=79.89 Aligned_cols=59 Identities=14% Similarity=0.089 Sum_probs=48.9
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCC
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLAS 88 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~ 88 (298)
||| ..+...+...+.-+|.+|.|+||..+...+...+.+.+...+.|+++++||+|...
T Consensus 75 PGH-~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 75 PGH-MDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNG 133 (638)
T ss_dssp CCS-SSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSS
T ss_pred CCc-HHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEecccccc
Confidence 899 56888888999999999999999998877766665554446899999999999753
No 371
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.58 E-value=0.0001 Score=62.29 Aligned_cols=81 Identities=10% Similarity=0.089 Sum_probs=52.7
Q ss_pred CCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHc--cCCCEEEEecCCCcCHHHHH
Q 022351 46 VDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQ--QNCPSFGVNSHNKDNVKEFL 121 (298)
Q Consensus 46 aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~--~~~~vi~iSa~~~~gi~~L~ 121 (298)
.+.+++|+|+..+..... .... ..+.|.++|+||+|+.+.. ..+...+.++. ...+++.+||+++.|+++++
T Consensus 130 ~~~~i~vvd~~~~~~~~~-~~~~---~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~ 205 (221)
T 2wsm_A 130 ENYRVVMVSVTEGDDVVE-KHPE---IFRVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWI 205 (221)
T ss_dssp CSEEEEEEEGGGCTTHHH-HCHH---HHHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHH
T ss_pred cCcEEEEEeCCCcchhhh-hhhh---hhhcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHH
Confidence 456677999876432111 1111 1357899999999996431 23333344432 24578999999999999999
Q ss_pred HHHHHHHHh
Q 022351 122 KFLQAHVRN 130 (298)
Q Consensus 122 ~~l~~~i~~ 130 (298)
++|.+.+..
T Consensus 206 ~~l~~~~~~ 214 (221)
T 2wsm_A 206 DFLRGILNV 214 (221)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 999876543
No 372
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.58 E-value=6.7e-05 Score=70.65 Aligned_cols=25 Identities=40% Similarity=0.517 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.-.++|+++|.+|||||||+|.|++
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g 53 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFL 53 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhC
Confidence 3457899999999999999999985
No 373
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.58 E-value=0.00014 Score=61.65 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...+|+++|.+|||||||+|.|+.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999984
No 374
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.56 E-value=4.6e-05 Score=74.91 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
+..+|+++|.+|+|||||+|+|++
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~ 27 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRG 27 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCcHHHHHHHHhc
Confidence 346899999999999999999984
No 375
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.56 E-value=0.00014 Score=66.71 Aligned_cols=84 Identities=6% Similarity=0.063 Sum_probs=52.6
Q ss_pred hcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHH----HHHHHHc-------cCCCEEEEe
Q 022351 42 RMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKE----WITFFDQ-------QNCPSFGVN 110 (298)
Q Consensus 42 ~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~----~~~~~~~-------~~~~vi~iS 110 (298)
..+.+|++++|+|+..+... ..+...+ ...|.++|+||+|+.+...... +...+.. ...+++++|
T Consensus 184 l~~~~d~vl~V~d~~~~~~~--~~i~~~i--l~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iS 259 (349)
T 2www_A 184 VADMVDMFVLLLPPAGGDEL--QGIKRGI--IEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRIS 259 (349)
T ss_dssp HHTTCSEEEEEECCC----------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECC
T ss_pred HHhhCCEEEEEEcCCcchhH--HHhHHHH--HhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEe
Confidence 35789999999998764321 1121111 2468899999999976433222 2222211 123678999
Q ss_pred cCCCcCHHHHHHHHHHHHH
Q 022351 111 SHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 111 a~~~~gi~~L~~~l~~~i~ 129 (298)
|+++.|+++|.++|.+.+.
T Consensus 260 A~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 260 ARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987764
No 376
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.55 E-value=9.4e-05 Score=67.64 Aligned_cols=83 Identities=13% Similarity=0.089 Sum_probs=54.4
Q ss_pred hcCCCCeEEEEEeCCCCCCcccHHHhccCC--CCCCcEEEEEecCCCCChhhHHHHHHHHH----cc-------CCCEEE
Q 022351 42 RMPLVDIILEVRDARIPFSSEFDQLRNHHP--FSSSRRILVLNKMDLASPTQFKEWITFFD----QQ-------NCPSFG 108 (298)
Q Consensus 42 ~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~--~~~k~~IiVlNK~DL~~~~~~~~~~~~~~----~~-------~~~vi~ 108 (298)
.+..+|++++|+|+..+.. +. .+. ..+.|.++|+||+|+.+........+.++ .. ..++++
T Consensus 166 ~~~~aD~vl~Vvd~~~~~~-----~~-~l~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~ 239 (341)
T 2p67_A 166 VARMVDCFISLQIAGGGDD-----LQ-GIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLT 239 (341)
T ss_dssp HHTTCSEEEEEECC-----------C-CCCHHHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEE
T ss_pred HHHhCCEEEEEEeCCccHH-----HH-HHHHhhhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEE
Confidence 3589999999999864321 11 111 02468899999999987544433322221 11 236789
Q ss_pred EecCCCcCHHHHHHHHHHHHHh
Q 022351 109 VNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 109 iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
+||+++.|+++|++.|.+.+..
T Consensus 240 iSA~~g~gi~~L~~~l~~~~~~ 261 (341)
T 2p67_A 240 CSALEKRGIDEIWHAIIDFKTA 261 (341)
T ss_dssp CBGGGTBSHHHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887653
No 377
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.50 E-value=0.00011 Score=63.32 Aligned_cols=96 Identities=18% Similarity=0.150 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhc-cCC----CCCCcEEEEEecCCCCChhhHHH--------HHHHHH
Q 022351 34 AATRAIADRMPLVDIILEVRDARIPFSSEFDQLRN-HHP----FSSSRRILVLNKMDLASPTQFKE--------WITFFD 100 (298)
Q Consensus 34 ~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~-~l~----~~~k~~IiVlNK~DL~~~~~~~~--------~~~~~~ 100 (298)
+..+.+......+|++|+|+|+.. +...+..+.. +.. ...+|+++|+||+|+.....++. ..+..+
T Consensus 101 ~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 101 EIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD 179 (239)
T ss_dssp HHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence 444555566788999999999874 3333322222 111 12469999999999976544332 222233
Q ss_pred ccCCCEEEEecCCC-----cCHHHHHHHHHHHHHh
Q 022351 101 QQNCPSFGVNSHNK-----DNVKEFLKFLQAHVRN 130 (298)
Q Consensus 101 ~~~~~vi~iSa~~~-----~gi~~L~~~l~~~i~~ 130 (298)
..+..++.+++..+ .++.+|++.+...+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 44556777777644 5788888888777654
No 378
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.49 E-value=3e-05 Score=74.04 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...++|+++|.+|+|||||+|+|+.
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHH
Confidence 4567999999999999999999974
No 379
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.45 E-value=8.6e-05 Score=77.56 Aligned_cols=69 Identities=17% Similarity=0.180 Sum_probs=38.7
Q ss_pred CCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCcc--------ceeecCCCCeeeeeEEEEEc-cCCCEEEEeCC
Q 022351 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLR--------HATVSPQPGETKDIYSLKIA-SHPNIYVLDTP 208 (298)
Q Consensus 138 ~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~--------~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTP 208 (298)
...+.++|+++|.+|+|||||+|+|++... ..+... .......+|+|.+...+.+. ....+.|+|||
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~----~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTP 367 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLA----KTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCP 367 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHH----HHSCC---------------------CCSCEEEECSSCEEEEEECC
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhc----cccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECC
Confidence 345678999999999999999999985210 001000 01122356777765544333 34569999999
Q ss_pred CC
Q 022351 209 GI 210 (298)
Q Consensus 209 Gi 210 (298)
|.
T Consensus 368 GH 369 (1289)
T 3avx_A 368 GH 369 (1289)
T ss_dssp CH
T ss_pred Ch
Confidence 96
No 380
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.41 E-value=0.00011 Score=73.43 Aligned_cols=71 Identities=18% Similarity=0.193 Sum_probs=35.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhh-cchhhhhcCCccceeecC------CCCeeeeeEEEEE-ccCCCEEEEeCCCCCC
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQI-GRITAAEKGKLRHATVSP------QPGETKDIYSLKI-ASHPNIYVLDTPGILP 212 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~~~~~~~~~~~~~------~pg~T~~~~~~~~-~~~~~~~liDTPGi~~ 212 (298)
...+|+++|.+|+|||||+|+|+.. +....... -....++.+ ..|.|.......+ ..+..+.|+||||...
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~-v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGE-VHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccce-ecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 3579999999999999999999842 11110000 000001111 3355544433222 1233689999999854
No 381
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.39 E-value=0.0002 Score=66.02 Aligned_cols=82 Identities=10% Similarity=0.037 Sum_probs=46.1
Q ss_pred CCeEEEEEeC-CCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHH----HHHHHHccCCCEEEEecCCCcCHHHH
Q 022351 46 VDIILEVRDA-RIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKE----WITFFDQQNCPSFGVNSHNKDNVKEF 120 (298)
Q Consensus 46 aDlVl~VvDa-~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~----~~~~~~~~~~~vi~iSa~~~~gi~~L 120 (298)
+++++++++. ..++...+..+...+. .+.|+|+|+||+|+.....+.. ..+.+...+++++.+||+++.+ ++.
T Consensus 146 v~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~ 223 (361)
T 2qag_A 146 VHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DED 223 (361)
T ss_dssp CCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------
T ss_pred eEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chh
Confidence 4678888876 5555555444544443 5789999999999988765543 2233334577889999999887 555
Q ss_pred HHHHHHHHH
Q 022351 121 LKFLQAHVR 129 (298)
Q Consensus 121 ~~~l~~~i~ 129 (298)
+..+...+.
T Consensus 224 ~~~l~~~i~ 232 (361)
T 2qag_A 224 FKEQTRLLK 232 (361)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 544444443
No 382
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.31 E-value=0.00021 Score=65.07 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=33.8
Q ss_pred EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPP 213 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~ 213 (298)
+|+++|.+|||||||++.+.. +.........+.|..+....+...-.+.|+||||--..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~-----------~~~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf 59 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFH-----------NMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNY 59 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHS-----------CCCSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSS
T ss_pred CEEEECCCCCCHHHHHHHHHc-----------CCCCCccceecCeeeeeeEEEccEEEEEEEECCCchhc
Confidence 478999999999999998762 11000001111222222112222336999999997554
No 383
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.30 E-value=9.8e-05 Score=65.92 Aligned_cols=99 Identities=8% Similarity=-0.050 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc-ccHHHh---ccCC----CCCCcEEEEEec-CCCCChhhHHHHHHHHH
Q 022351 30 PHMAAATRAIADRMPLVDIILEVRDARIPFSS-EFDQLR---NHHP----FSSSRRILVLNK-MDLASPTQFKEWITFFD 100 (298)
Q Consensus 30 ghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~-~~~~l~---~~l~----~~~k~~IiVlNK-~DL~~~~~~~~~~~~~~ 100 (298)
|.+.+....++.+.+++|.||+|||+.+...- .-.++. .++. ..+.|++|..|| -|+...-...+..+.+.
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~ 274 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH 274 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcC
Confidence 34344455667889999999999999765321 111121 2221 147899999997 47754333334444432
Q ss_pred ----ccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351 101 ----QQNCPSFGVNSHNKDNVKEFLKFLQAHV 128 (298)
Q Consensus 101 ----~~~~~vi~iSa~~~~gi~~L~~~l~~~i 128 (298)
...+.+..+||.+|+|+.+-+++|.+.+
T Consensus 275 L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 275 LNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp GGGGCSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred CccCCCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence 2344688999999999999999998765
No 384
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.27 E-value=6.6e-05 Score=62.58 Aligned_cols=92 Identities=21% Similarity=0.088 Sum_probs=61.0
Q ss_pred HHHhcCCCCeEEEEEeCCCCCCcccH-HHhc-c--CCCCCCcEEEEEecCCCCChh--hHHHHHHHHHccCCCEEEEecC
Q 022351 39 IADRMPLVDIILEVRDARIPFSSEFD-QLRN-H--HPFSSSRRILVLNKMDLASPT--QFKEWITFFDQQNCPSFGVNSH 112 (298)
Q Consensus 39 i~~~l~~aDlVl~VvDa~~p~~~~~~-~l~~-~--l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~~~~~vi~iSa~ 112 (298)
.......+|.+++|+|...+.+..+. .+.. + ....+.|+++|+||+|+.... ............++.++.+||+
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal 150 (199)
T 2f9l_A 71 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSAL 150 (199)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred hHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCC
Confidence 34556789999999998764332221 1111 1 012468999999999996432 1222233334456778889999
Q ss_pred CCcCHHHHHHHHHHHHHh
Q 022351 113 NKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 113 ~~~gi~~L~~~l~~~i~~ 130 (298)
++.|++++++.|.+.+.+
T Consensus 151 ~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 151 DSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999877654
No 385
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.25 E-value=0.00043 Score=62.54 Aligned_cols=88 Identities=14% Similarity=0.132 Sum_probs=58.7
Q ss_pred CCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCcCHHHHHHHHHHHHHhhhhc-cCCCCCCceEEEEEcCCC
Q 022351 74 SSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKS-DYDASSDTVTVMLLGIPN 152 (298)
Q Consensus 74 ~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~~~~~-~~~~~~~~~~i~vvG~~n 152 (298)
.....||++|.|..+++. ++..++.+.+++.++..+...+..|..++...+....-. ...-...+.-++++|.||
T Consensus 79 ~~~P~IIltrg~~~peel----ie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG 154 (314)
T 1ko7_A 79 PETPAIIVTRDLEPPEEL----IEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSG 154 (314)
T ss_dssp TTCCCEEECTTCCCCHHH----HHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTT
T ss_pred CCCCEEEEeCCCCCCHHH----HHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCC
Confidence 456677899999876543 333345588999888777777777777776543210000 000011356899999999
Q ss_pred CchHHHHHHHhhh
Q 022351 153 VGKSALANSLHQI 165 (298)
Q Consensus 153 vGKSsliN~L~~~ 165 (298)
+||||+.+.|.+.
T Consensus 155 ~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 155 IGKSETALELIKR 167 (314)
T ss_dssp SSHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhc
Confidence 9999999999863
No 386
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.23 E-value=6.4e-05 Score=68.47 Aligned_cols=105 Identities=16% Similarity=0.073 Sum_probs=70.9
Q ss_pred CccchhhHHHHHHHHHHhcCCCCeEEEEEeCC-------CCCCccc------HHHhccCC---CCCCcEEEEEecCCCCC
Q 022351 25 GGWYGPHMAAATRAIADRMPLVDIILEVRDAR-------IPFSSEF------DQLRNHHP---FSSSRRILVLNKMDLAS 88 (298)
Q Consensus 25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~-------~p~~~~~------~~l~~~l~---~~~k~~IiVlNK~DL~~ 88 (298)
.-|..|++.+....+..+...++.+|+|+|.. +. ...+ ..+..++. ..+.|+++++||+||..
T Consensus 170 ~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~-~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 170 RMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVES-DNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLE 248 (327)
T ss_dssp EEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSC-TTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHH
T ss_pred EEEEcCCchhHHHHHHHHhCCCCEEEEEEECcccccccccc-ccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhh
Confidence 36888888888888888999999999999765 11 1111 11222222 14689999999999853
Q ss_pred hh------------------hHHHHHHHH----H------ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 89 PT------------------QFKEWITFF----D------QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 89 ~~------------------~~~~~~~~~----~------~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
.. ..++..+++ . ..++.++.+||+++.+++.++..+.+.+-.
T Consensus 249 ~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~ 318 (327)
T 3ohm_A 249 EKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 318 (327)
T ss_dssp HHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHH
Confidence 21 223333332 1 123456789999999999999998877654
No 387
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.21 E-value=0.00035 Score=69.99 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...+|+++|.+|+|||||+++|+.
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~ 32 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILF 32 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999974
No 388
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.20 E-value=0.00013 Score=74.46 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...+|+++|.+|+|||||+|+|+.
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~ 41 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQ 41 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999985
No 389
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.20 E-value=0.00064 Score=65.39 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=20.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHHh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~ 163 (298)
.++..|+++|.+||||||++|.|.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999997
No 390
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.19 E-value=0.00013 Score=71.62 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCCchHHHHHHHhh
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
..+++++|.+|+|||||+|+|+.
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~ 28 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLE 28 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999985
No 391
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.18 E-value=0.00015 Score=71.27 Aligned_cols=70 Identities=20% Similarity=0.294 Sum_probs=30.0
Q ss_pred ceEEEEEcCCCCchHHHHHHHhh-hcchhhhhcCCccce---eecCCCCeeeeeEEEEE--c--cC--CCEEEEeCCCCC
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQ-IGRITAAEKGKLRHA---TVSPQPGETKDIYSLKI--A--SH--PNIYVLDTPGIL 211 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~-~~~~~~~~~~~~~~~---~~~~~pg~T~~~~~~~~--~--~~--~~~~liDTPGi~ 211 (298)
..+++++|.+|+|||||+++|+. ++.+...+- ..... ......|.|.....+.+ . ++ ..+.|+||||..
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~-~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREM-EAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC---------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccc-cccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45899999999999999999985 222211000 00000 01123456655443222 1 11 247899999975
Q ss_pred C
Q 022351 212 P 212 (298)
Q Consensus 212 ~ 212 (298)
.
T Consensus 83 d 83 (599)
T 3cb4_D 83 D 83 (599)
T ss_dssp G
T ss_pred H
Confidence 4
No 392
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.15 E-value=0.00019 Score=72.02 Aligned_cols=58 Identities=17% Similarity=0.129 Sum_probs=47.1
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCC
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLA 87 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~ 87 (298)
||| ..+...+...+.-+|-+|.|+|+..+.......+.+.+...+.|+++++||+|..
T Consensus 93 PGH-vDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 93 PGH-VDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQ 150 (709)
T ss_dssp CSC-TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSST
T ss_pred CCC-cccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEcccccc
Confidence 788 4577777788888999999999999887776666554444689999999999975
No 393
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.14 E-value=7.6e-05 Score=68.30 Aligned_cols=105 Identities=13% Similarity=0.091 Sum_probs=68.7
Q ss_pred CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCC---------CCCcccH---HHhccCC---CCCCcEEEEEecCCCCCh
Q 022351 25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARI---------PFSSEFD---QLRNHHP---FSSSRRILVLNKMDLASP 89 (298)
Q Consensus 25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~---------p~~~~~~---~l~~~l~---~~~k~~IiVlNK~DL~~~ 89 (298)
.-|..|++.+....+..+...++.||+|+|... ....... .+..++. ..+.|+++++||+||...
T Consensus 164 ~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~e 243 (340)
T 4fid_A 164 HLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEE 243 (340)
T ss_dssp EEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHH
T ss_pred ccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhh
Confidence 478888888888888899999999999999862 1111111 1222211 147899999999998532
Q ss_pred h-----------------hHHHHH----HHH------Hc-----------------cCCCEEEEecCCCcCHHHHHHHHH
Q 022351 90 T-----------------QFKEWI----TFF------DQ-----------------QNCPSFGVNSHNKDNVKEFLKFLQ 125 (298)
Q Consensus 90 ~-----------------~~~~~~----~~~------~~-----------------~~~~vi~iSa~~~~gi~~L~~~l~ 125 (298)
. ..++.. +.+ .. ..+.++.+||....+++.++..+.
T Consensus 244 ki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~ 323 (340)
T 4fid_A 244 KLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAV 323 (340)
T ss_dssp HHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHH
T ss_pred hcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHH
Confidence 1 122222 223 10 124567899999999998888877
Q ss_pred HHHH
Q 022351 126 AHVR 129 (298)
Q Consensus 126 ~~i~ 129 (298)
+.+-
T Consensus 324 ~~Il 327 (340)
T 4fid_A 324 DVIM 327 (340)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 394
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.13 E-value=0.00016 Score=63.10 Aligned_cols=25 Identities=28% Similarity=0.573 Sum_probs=22.7
Q ss_pred CCceEEEEEcCC---------CCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIP---------NVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~---------nvGKSsliN~L~~ 164 (298)
...++|+++|.+ |||||||+|+|.+
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 456899999999 9999999999984
No 395
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.12 E-value=4.7e-05 Score=70.15 Aligned_cols=105 Identities=12% Similarity=0.116 Sum_probs=67.3
Q ss_pred CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCC-------C--CCcccH---HHhccCC---CCCCcEEEEEecCCCCCh
Q 022351 25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARI-------P--FSSEFD---QLRNHHP---FSSSRRILVLNKMDLASP 89 (298)
Q Consensus 25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~-------p--~~~~~~---~l~~~l~---~~~k~~IiVlNK~DL~~~ 89 (298)
.-|..+++.+.......+...++.+|+|+|... . ..+... .+..++. ..+.|++||+||+||...
T Consensus 186 ~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ 265 (354)
T 2xtz_A 186 RLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEK 265 (354)
T ss_dssp EEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHH
T ss_pred EEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhh
Confidence 368888777777777788999999999999861 1 111111 1222221 146899999999998421
Q ss_pred h-----------------------hHHHHHHHHHc----------------cCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351 90 T-----------------------QFKEWITFFDQ----------------QNCPSFGVNSHNKDNVKEFLKFLQAHVR 129 (298)
Q Consensus 90 ~-----------------------~~~~~~~~~~~----------------~~~~vi~iSa~~~~gi~~L~~~l~~~i~ 129 (298)
. ..++..+++.. ..+.++.+||+++.|++++++.+.+.+.
T Consensus 266 k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~ 344 (354)
T 2xtz_A 266 KVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLR 344 (354)
T ss_dssp HTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred hcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHH
Confidence 1 12222222111 1224578999999999999998877654
No 396
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.09 E-value=8.8e-05 Score=69.41 Aligned_cols=105 Identities=14% Similarity=0.090 Sum_probs=68.2
Q ss_pred CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCC---------CCcccH---HHhccCC---CCCCcEEEEEecCCCCCh
Q 022351 25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIP---------FSSEFD---QLRNHHP---FSSSRRILVLNKMDLASP 89 (298)
Q Consensus 25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p---------~~~~~~---~l~~~l~---~~~k~~IiVlNK~DL~~~ 89 (298)
.-|..|++.+....+..+...++.||+|+|...- ..+... .+..++. ..+.|++||+||+||...
T Consensus 220 ~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ 299 (402)
T 1azs_C 220 HMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAE 299 (402)
T ss_dssp EEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHH
T ss_pred eecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhh
Confidence 3688888777777778899999999999998750 111111 1222221 246899999999998432
Q ss_pred hh--------------------------------HHHHHHH----HHc---------cCCCEEEEecCCCcCHHHHHHHH
Q 022351 90 TQ--------------------------------FKEWITF----FDQ---------QNCPSFGVNSHNKDNVKEFLKFL 124 (298)
Q Consensus 90 ~~--------------------------------~~~~~~~----~~~---------~~~~vi~iSa~~~~gi~~L~~~l 124 (298)
.. .+....+ |.+ ..+.++.+||+++.+++.++..+
T Consensus 300 ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v 379 (402)
T 1azs_C 300 KVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDC 379 (402)
T ss_dssp HHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred hhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHH
Confidence 11 1111111 111 13346789999999999999988
Q ss_pred HHHHH
Q 022351 125 QAHVR 129 (298)
Q Consensus 125 ~~~i~ 129 (298)
.+.+.
T Consensus 380 ~~~I~ 384 (402)
T 1azs_C 380 RDIIQ 384 (402)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 397
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.09 E-value=0.00011 Score=68.64 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=35.5
Q ss_pred CCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCcCHHHHH
Q 022351 74 SSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL 121 (298)
Q Consensus 74 ~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~ 121 (298)
.+|+++|+||+|+...+.+..+.+.+...+.+++++||+.+.++.+|+
T Consensus 214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~ 261 (397)
T 1wxq_A 214 NKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKAA 261 (397)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCS
T ss_pred CCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEEEeccchhhHHHHH
Confidence 499999999999985444455555554335689999999988887653
No 398
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.08 E-value=2.6e-05 Score=65.82 Aligned_cols=74 Identities=11% Similarity=0.031 Sum_probs=37.5
Q ss_pred cCCCCeEEEEEeCC-CCCCcc--cHHHhccC------CCCCCcEEEEEecCCCCChhhHHHHHHHH--------HccCCC
Q 022351 43 MPLVDIILEVRDAR-IPFSSE--FDQLRNHH------PFSSSRRILVLNKMDLASPTQFKEWITFF--------DQQNCP 105 (298)
Q Consensus 43 l~~aDlVl~VvDa~-~p~~~~--~~~l~~~l------~~~~k~~IiVlNK~DL~~~~~~~~~~~~~--------~~~~~~ 105 (298)
+..+|.+|+|+|+. .+.... ...+..++ ...+.|+++|+||+|+.+......+.+.+ ...+..
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 34489999999998 432221 12222221 12579999999999998654333222211 122335
Q ss_pred EEEEecCCCcC
Q 022351 106 SFGVNSHNKDN 116 (298)
Q Consensus 106 vi~iSa~~~~g 116 (298)
++.+||+++.+
T Consensus 160 ~~~~Sa~~~~~ 170 (218)
T 1nrj_B 160 LNEVERKINEE 170 (218)
T ss_dssp HHC--------
T ss_pred ccccccccccc
Confidence 67778877653
No 399
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.07 E-value=0.00054 Score=57.95 Aligned_cols=57 Identities=18% Similarity=0.332 Sum_probs=40.8
Q ss_pred CCcEEEEEecCCCCChh--hHHHHHHHHH--ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351 74 SSRRILVLNKMDLASPT--QFKEWITFFD--QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 74 ~k~~IiVlNK~DL~~~~--~~~~~~~~~~--~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~ 130 (298)
++|.++|+||+|+.+.. ..+...+.+. ..+.+++.+||+++.|++++++.+.+.+..
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 35669999999986431 2333333333 235578999999999999999999876643
No 400
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.03 E-value=0.00042 Score=63.61 Aligned_cols=107 Identities=13% Similarity=0.089 Sum_probs=64.3
Q ss_pred eecccCCCccc-----hhhHHH-HHHHHHHhcCCCCeEEEEEeCCCCC-C-cccHHHhccCCCCCCcEEEEEecCCCCCh
Q 022351 18 AVSQKKGGGWY-----GPHMAA-ATRAIADRMPLVDIILEVRDARIPF-S-SEFDQLRNHHPFSSSRRILVLNKMDLASP 89 (298)
Q Consensus 18 ~~~~~~~~~wf-----pghm~~-~~~~i~~~l~~aDlVl~VvDa~~p~-~-~~~~~l~~~l~~~~k~~IiVlNK~DL~~~ 89 (298)
...+.+|...+ +....+ ....+..++.++|+||+|+|+.... . .....+...+...++|+++|+||+|+.+.
T Consensus 139 ~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 139 TLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp EEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCT
T ss_pred EEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCC
Confidence 34455665444 222222 3456667899999999999865322 1 22233444444467899999999999865
Q ss_pred hh-HHHHHHHH-HccCCCEEEEecCCCcCHHHHHHHH
Q 022351 90 TQ-FKEWITFF-DQQNCPSFGVNSHNKDNVKEFLKFL 124 (298)
Q Consensus 90 ~~-~~~~~~~~-~~~~~~vi~iSa~~~~gi~~L~~~l 124 (298)
.. .....+.+ ...+..++.+++.++.++++.....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 219 GTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp TCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred cccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence 32 11111111 1234578899999988877654443
No 401
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=96.97 E-value=0.00013 Score=66.46 Aligned_cols=100 Identities=10% Similarity=-0.053 Sum_probs=60.8
Q ss_pred CccchhhHHHHHH---HHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCC-----CCCCcEEEEEecCCCCChhhH----
Q 022351 25 GGWYGPHMAAATR---AIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVLNKMDLASPTQF---- 92 (298)
Q Consensus 25 ~~wfpghm~~~~~---~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~-----~~~k~~IiVlNK~DL~~~~~~---- 92 (298)
.-|..+++++... ....++..++.+|+|+|+.+........+..++. ..+.|++++.||+||.+++..
T Consensus 49 qIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~ 128 (331)
T 3r7w_B 49 AVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQ 128 (331)
T ss_dssp EEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHH
T ss_pred EEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHH
Confidence 4677766666532 3457789999999999998762211122221111 257899999999999875321
Q ss_pred ---H-HHHHHHHc-----cCCCEEEEecCCCcCHHHHHHHHH
Q 022351 93 ---K-EWITFFDQ-----QNCPSFGVNSHNKDNVKEFLKFLQ 125 (298)
Q Consensus 93 ---~-~~~~~~~~-----~~~~vi~iSa~~~~gi~~L~~~l~ 125 (298)
. +..+.+.+ .+..++.+||++ .++.+....+.
T Consensus 129 R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv 169 (331)
T 3r7w_B 129 RDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIV 169 (331)
T ss_dssp HHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHH
T ss_pred HHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHH
Confidence 1 11122222 244678899987 46766555443
No 402
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.95 E-value=0.00078 Score=63.61 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.+..|+++|.+||||||+++.|..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999974
No 403
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.91 E-value=0.00096 Score=59.84 Aligned_cols=85 Identities=8% Similarity=-0.015 Sum_probs=47.5
Q ss_pred CCCCeEEEEEeCCC-CCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHH----HHHHHHHccCCCEEEEecCCCcCHH
Q 022351 44 PLVDIILEVRDARI-PFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFK----EWITFFDQQNCPSFGVNSHNKDNVK 118 (298)
Q Consensus 44 ~~aDlVl~VvDa~~-p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~----~~~~~~~~~~~~vi~iSa~~~~gi~ 118 (298)
.+++++++++++.. .+......+...+. ...++++|+||.|+....++. ...+..+..+++++.+||+++ +++
T Consensus 125 ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~ 202 (301)
T 2qnr_A 125 NRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DED 202 (301)
T ss_dssp CCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC--------
T ss_pred hhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-ccc
Confidence 34566777776532 24433333333322 357899999999998764432 333444556788899999999 999
Q ss_pred HHHHHHHHHHHh
Q 022351 119 EFLKFLQAHVRN 130 (298)
Q Consensus 119 ~L~~~l~~~i~~ 130 (298)
+++..+.+.+.+
T Consensus 203 e~f~~l~~~i~~ 214 (301)
T 2qnr_A 203 EDFKEQTRLLKA 214 (301)
T ss_dssp --CHHHHHHHHT
T ss_pred HHHHHHHHHhhc
Confidence 988888776654
No 404
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.89 E-value=0.00013 Score=66.94 Aligned_cols=91 Identities=15% Similarity=0.122 Sum_probs=57.5
Q ss_pred HHHHHHhcC-CCCeEEEEEeCCCCCCcccH-HHhccCCCCCCcEEEEEecCCCCChhh-HHHHHHHH-H--ccCC-CEEE
Q 022351 36 TRAIADRMP-LVDIILEVRDARIPFSSEFD-QLRNHHPFSSSRRILVLNKMDLASPTQ-FKEWITFF-D--QQNC-PSFG 108 (298)
Q Consensus 36 ~~~i~~~l~-~aDlVl~VvDa~~p~~~~~~-~l~~~l~~~~k~~IiVlNK~DL~~~~~-~~~~~~~~-~--~~~~-~vi~ 108 (298)
...+..++. ..++|++|+|+..++...+. .+.+.+...+.|+++|+||+|+.+... ...+.+.. . ..++ +++.
T Consensus 157 ~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~ 236 (353)
T 2x2e_A 157 RDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVN 236 (353)
T ss_dssp HHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCC
T ss_pred HHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEe
Confidence 344555654 45677778888765554443 244444446799999999999986532 22222110 0 1122 4677
Q ss_pred EecCCCcCHHHHHHHHHH
Q 022351 109 VNSHNKDNVKEFLKFLQA 126 (298)
Q Consensus 109 iSa~~~~gi~~L~~~l~~ 126 (298)
+||+++.|++++.+.+..
T Consensus 237 ~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 237 RSQKDIDGKKDITAALAA 254 (353)
T ss_dssp CCHHHHHTTCCHHHHHHH
T ss_pred CCcccccccccHHHHHHH
Confidence 999999999998888876
No 405
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.88 E-value=0.00024 Score=61.72 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~ 163 (298)
.....++++|.+||||||++|.|.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHH
Confidence 345788999999999999999997
No 406
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.84 E-value=0.00065 Score=57.27 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.+..++++|.+|+|||||+|.|++
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 455789999999999999999985
No 407
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.83 E-value=0.0012 Score=65.72 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
....+++++|.+|+|||||+|+|++
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~ 31 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLY 31 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCChHHHHHHHHHH
Confidence 3567899999999999999999984
No 408
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.79 E-value=0.0013 Score=63.92 Aligned_cols=63 Identities=22% Similarity=0.171 Sum_probs=45.7
Q ss_pred HHHHHhcCCCCeEEEEEeCCCC-CCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHH
Q 022351 37 RAIADRMPLVDIILEVRDARIP-FSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFF 99 (298)
Q Consensus 37 ~~i~~~l~~aDlVl~VvDa~~p-~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~ 99 (298)
..+...+..+|+||+|+|+..+ .......+...+...+.|+++|+||+|+.+.+.+......+
T Consensus 180 ~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~~l 243 (550)
T 2qpt_A 180 AVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGAL 243 (550)
T ss_dssp HHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHHHh
Confidence 4455677889999999999864 34444455555555678999999999999877665555444
No 409
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.71 E-value=0.00075 Score=63.44 Aligned_cols=81 Identities=9% Similarity=0.102 Sum_probs=42.2
Q ss_pred CCCeEEEEEeCC-CCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHH----HHHHHHccCCCEEEEecCCCcCHHH
Q 022351 45 LVDIILEVRDAR-IPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKE----WITFFDQQNCPSFGVNSHNKDNVKE 119 (298)
Q Consensus 45 ~aDlVl~VvDa~-~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~----~~~~~~~~~~~vi~iSa~~~~gi~~ 119 (298)
++++++++++++ ..+...+..+...+. .+.++|+|+||+|+.....+.. ..+.+...+++++.+|+.++.++++
T Consensus 138 ~~~vlL~ldePt~~~L~~~d~~~lk~L~-~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~ 216 (418)
T 2qag_C 138 RVQCCLYFIAPSGHGLKPLDIEFMKRLH-EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENK 216 (418)
T ss_dssp -CCEEEEECCC-CCSCCHHHHHHHHHHT-TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC---------
T ss_pred CeeEEEEEecCcccCCCHHHHHHHHHHh-ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHH
Confidence 355677777765 455555544444443 4789999999999987655443 3334445577888899999888887
Q ss_pred HHHHHHH
Q 022351 120 FLKFLQA 126 (298)
Q Consensus 120 L~~~l~~ 126 (298)
+...+..
T Consensus 217 ~~~~l~~ 223 (418)
T 2qag_C 217 LVKKIKD 223 (418)
T ss_dssp -------
T ss_pred HHHHHHh
Confidence 6555543
No 410
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.66 E-value=0.00043 Score=57.33 Aligned_cols=89 Identities=18% Similarity=0.076 Sum_probs=57.7
Q ss_pred HHHhcCCCCeEEEEEeCCCCCCccc-HHHhc-c--CCCCCCcEEEEEecCCCCChh--hHHHHHHHHHccCCCEEEEecC
Q 022351 39 IADRMPLVDIILEVRDARIPFSSEF-DQLRN-H--HPFSSSRRILVLNKMDLASPT--QFKEWITFFDQQNCPSFGVNSH 112 (298)
Q Consensus 39 i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~-~--l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~~~~~vi~iSa~ 112 (298)
+...+..++.+++|+|.....+..+ ..+.. + ......|+++++||+|+.... ..........+.++.++.+|++
T Consensus 95 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sal 174 (191)
T 1oix_A 95 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSAL 174 (191)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred hHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 3455678899999999875422111 11111 1 012468899999999986421 1222233334456678889999
Q ss_pred CCcCHHHHHHHHHHH
Q 022351 113 NKDNVKEFLKFLQAH 127 (298)
Q Consensus 113 ~~~gi~~L~~~l~~~ 127 (298)
++.+++++++.|.+.
T Consensus 175 d~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 175 DSTNVEAAFQTILTE 189 (191)
T ss_dssp TCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999988754
No 411
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.58 E-value=0.0022 Score=53.94 Aligned_cols=25 Identities=40% Similarity=0.531 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.++..++++|.+|+|||||++.|.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999975
No 412
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.47 E-value=0.0038 Score=59.08 Aligned_cols=76 Identities=21% Similarity=0.201 Sum_probs=42.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhhc-chhhh-hcCC----ccceeec-CCCCeeeeeEEE----EE--ccCC--CEEEE
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQIG-RITAA-EKGK----LRHATVS-PQPGETKDIYSL----KI--ASHP--NIYVL 205 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~~-~~~~~-~~~~----~~~~~~~-~~pg~T~~~~~~----~~--~~~~--~~~li 205 (298)
+-..|+|+|.+++|||+|+|.|++.- ..... ..|. ...-.++ ....+|+.+... .+ ..+. .+.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 45678899999999999999887421 00000 0000 0111111 122356655421 11 1222 38899
Q ss_pred eCCCCCCCCCC
Q 022351 206 DTPGILPPEIH 216 (298)
Q Consensus 206 DTPGi~~~~~~ 216 (298)
||.|+..+...
T Consensus 146 DTEG~~d~~~~ 156 (457)
T 4ido_A 146 DTQGTFDSQST 156 (457)
T ss_dssp EECCBTCTTCC
T ss_pred eccCCCCcccC
Confidence 99999887664
No 413
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.45 E-value=0.0057 Score=55.67 Aligned_cols=85 Identities=9% Similarity=0.101 Sum_probs=51.6
Q ss_pred hcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh-hHHHHHHHHH----c-c------CCCEEEE
Q 022351 42 RMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT-QFKEWITFFD----Q-Q------NCPSFGV 109 (298)
Q Consensus 42 ~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~-~~~~~~~~~~----~-~------~~~vi~i 109 (298)
..+.+|++++|+|+..+.. ...+... ....+.++++||+|+.+.. ......+.+. . . ..+++++
T Consensus 165 v~~~~d~vl~v~d~~~~~~--~~~i~~~--i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~ 240 (337)
T 2qm8_A 165 VADLTDFFLVLMLPGAGDE--LQGIKKG--IFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTI 240 (337)
T ss_dssp HHTTSSEEEEEECSCC--------CCTT--HHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEE
T ss_pred HHhhCCEEEEEEcCCCccc--HHHHHHH--HhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 3478999999999753311 0001000 0134568888999986532 2111122221 0 1 3478999
Q ss_pred ecCCCcCHHHHHHHHHHHHHh
Q 022351 110 NSHNKDNVKEFLKFLQAHVRN 130 (298)
Q Consensus 110 Sa~~~~gi~~L~~~l~~~i~~ 130 (298)
||.++.|+++|.+.|.+....
T Consensus 241 Sal~g~gi~~L~~~I~~~~~~ 261 (337)
T 2qm8_A 241 SGLHGKGLDSLWSRIEDHRSK 261 (337)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999887653
No 414
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.003 Score=51.63 Aligned_cols=60 Identities=13% Similarity=0.038 Sum_probs=36.3
Q ss_pred HHhcCCCCeEEEEEeCC-CCCCccc--HHHhccC------CCCCCcEEEEEecCCCCChhhHHHHHHHH
Q 022351 40 ADRMPLVDIILEVRDAR-IPFSSEF--DQLRNHH------PFSSSRRILVLNKMDLASPTQFKEWITFF 99 (298)
Q Consensus 40 ~~~l~~aDlVl~VvDa~-~p~~~~~--~~l~~~l------~~~~k~~IiVlNK~DL~~~~~~~~~~~~~ 99 (298)
...+..+|++++|+|+. .+..... ..+..++ ...+.|+++|+||+|+.+........+.+
T Consensus 113 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 113 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp HHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred HhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 34556799999999997 3211111 1122221 12479999999999998765444444333
No 415
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.23 E-value=0.0021 Score=53.77 Aligned_cols=24 Identities=38% Similarity=0.421 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhh
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
+-.++++|.+|+|||||+|.|.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999863
No 416
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.21 E-value=0.0028 Score=52.04 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHHhh
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
+-.++++|.+|+|||||+|.|.+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999999985
No 417
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.15 E-value=0.0069 Score=59.58 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=20.3
Q ss_pred EEEEEcCCCCchHHHHHHHhhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~ 165 (298)
.++++|.+|+|||||+|+|.+.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSC
T ss_pred eEEEECCCCChHHHHHHHHhCC
Confidence 5999999999999999999864
No 418
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.11 E-value=0.0028 Score=52.82 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=18.7
Q ss_pred EEEEcCCCCchHHHHHHHhh
Q 022351 145 VMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 145 i~vvG~~nvGKSsliN~L~~ 164 (298)
|+++|.|||||+||++.|+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999984
No 419
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.11 E-value=0.0036 Score=60.83 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHHh
Q 022351 143 VTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~ 163 (298)
-+|+++|...+|||||.-+|+
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL 52 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLL 52 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEeCCCCCHHHHHHHHH
Confidence 489999999999999999997
No 420
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.11 E-value=0.0016 Score=64.41 Aligned_cols=69 Identities=23% Similarity=0.227 Sum_probs=38.7
Q ss_pred EEEEEcCCCCchHHHHHHHhh-hcchhhhhcCCccceeecC-CC-----CeeeeeEEEE-EccCCCEEEEeCCCCCCC
Q 022351 144 TVMLLGIPNVGKSALANSLHQ-IGRITAAEKGKLRHATVSP-QP-----GETKDIYSLK-IASHPNIYVLDTPGILPP 213 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~-~~~~~~~~~~~~~~~~~~~-~p-----g~T~~~~~~~-~~~~~~~~liDTPGi~~~ 213 (298)
+|+++|...+|||||..+|+. +|.++..... ....++.+ .+ |.|....... .+.+..+.||||||-.+.
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v-~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSV-DKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSC-CCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCcccccc-ccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 689999999999999999873 3333221100 00111111 11 3343322111 123446899999998764
No 421
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.08 E-value=0.019 Score=54.24 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~ 163 (298)
++..|+++|.+||||||+++.|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 46789999999999999999996
No 422
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=96.07 E-value=0.00095 Score=68.19 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCC
Q 022351 29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLA 87 (298)
Q Consensus 29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~ 87 (298)
||| .++...+...+..+|.+|+|+|+..+.......+...+...+.|+++++||+|+.
T Consensus 106 PG~-~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 106 PGH-VDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp CCC-CSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred cCc-hhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 666 4455566777889999999999998766555443222223578999999999986
No 423
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.06 E-value=0.0034 Score=51.75 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~ 165 (298)
+++++|.+|+|||||++.|.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999853
No 424
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.88 E-value=0.0052 Score=50.90 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
.+-.++++|.+|+|||||++.|.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3457899999999999999999853
No 425
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.87 E-value=0.005 Score=51.59 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
++-.++++|.+|+|||||+|.|.+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4457899999999999999999864
No 426
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.86 E-value=0.0053 Score=50.31 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
++..++++|.||+|||||++.|.+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 456799999999999999999975
No 427
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.83 E-value=0.013 Score=48.91 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
..+..++++|.+|+|||||.+.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999864
No 428
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.77 E-value=0.005 Score=52.28 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
++-.++++|.+|+|||||++.|.+.
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457899999999999999999864
No 429
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.75 E-value=0.0059 Score=52.08 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
++-.++++|.+|+|||||++.|.+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4568899999999999999999864
No 430
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.62 E-value=0.0059 Score=50.97 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.+..++++|.||+|||||.+.|..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999974
No 431
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.60 E-value=0.021 Score=50.78 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhh
Q 022351 116 NVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 116 gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.++.+++.|.+.+....+ .....+..|+++|.+|+|||||.+.|.+
T Consensus 8 ~~~~~~~~l~~~i~~~~~---~~~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 8 VLDYTIEFLDKYIPEWFE---TGNKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp HHHHHHHHHHHHHHHHHT---TTCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh---ccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 355566666655544211 1234678899999999999999998863
No 432
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.54 E-value=0.0066 Score=49.97 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHHhhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~ 165 (298)
.++++|.+|+|||||++.|.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999853
No 433
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.52 E-value=0.0088 Score=50.20 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
++..++++|.+|+|||||++.|.+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 456789999999999999999985
No 434
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.51 E-value=0.0086 Score=49.55 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
++..++++|.+|+||||+++.|.+.
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999853
No 435
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.49 E-value=0.0087 Score=49.95 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
.++..++++|.+|+|||||++.|.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 35568999999999999999999763
No 436
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.44 E-value=0.0085 Score=48.71 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=19.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~ 163 (298)
++-.++++|.+|+|||||++.+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34578999999999999999643
No 437
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.39 E-value=0.0092 Score=51.40 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
++-.++++|.+|+|||||++.|.+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 344789999999999999999985
No 438
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.31 E-value=0.01 Score=53.34 Aligned_cols=26 Identities=38% Similarity=0.583 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
.++-.++++|.+|+|||||++.|.+.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 34568999999999999999999864
No 439
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=95.26 E-value=0.016 Score=58.07 Aligned_cols=22 Identities=9% Similarity=0.114 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
-+|+++|....|||||.-+|+.
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~ 35 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLF 35 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4899999999999999999974
No 440
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.21 E-value=0.011 Score=49.10 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.+..++++|.+|+|||||.+.|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999974
No 441
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.20 E-value=0.0093 Score=47.97 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
..|+++|.||+||||+.+.|.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 442
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.20 E-value=0.011 Score=50.86 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
++-.++++|.+|+|||||++.|.+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999999985
No 443
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.18 E-value=0.015 Score=47.01 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.+..++++|.+|+||||+.+.|.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 444
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.17 E-value=0.011 Score=50.59 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHHhh
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
+-.++++|.+|+|||||++.|.+
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 44789999999999999999985
No 445
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.15 E-value=0.013 Score=50.73 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
++-.++++|.+|+|||||++.|.+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4557899999999999999999853
No 446
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.14 E-value=0.014 Score=51.18 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
.++-.++++|.+|+|||||++.|.+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 35668999999999999999999864
No 447
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.12 E-value=0.019 Score=46.68 Aligned_cols=42 Identities=24% Similarity=0.368 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhh
Q 022351 117 VKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 117 i~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
..+.++.+...+.... ...+-.++++|.||+|||||++++.+
T Consensus 19 ~~~~~~~~~~~~~~~~------~~~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFN------PEEGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp HHHHHHHHHHHHHSCC------GGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc------ccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4455555555554321 12345789999999999999999974
No 448
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.12 E-value=0.014 Score=48.55 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.++..++++|.+|+||||+.+.|.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999974
No 449
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.08 E-value=0.011 Score=48.49 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
..++++|.+|+|||||+|.|++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3689999999999999999984
No 450
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.07 E-value=0.013 Score=51.36 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
.+-.++++|.+|+|||||++.|.+.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3447899999999999999999853
No 451
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.05 E-value=0.012 Score=48.11 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~ 164 (298)
.++++|.+|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999974
No 452
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.99 E-value=0.017 Score=46.54 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
.++-.++++|..|+|||||++.|.+.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34557899999999999999999863
No 453
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.97 E-value=0.014 Score=50.06 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~ 163 (298)
++..++++|.+|+|||||++.|.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999998
No 454
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.97 E-value=0.014 Score=46.55 Aligned_cols=19 Identities=37% Similarity=0.747 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchHHHHHHH
Q 022351 144 TVMLLGIPNVGKSALANSL 162 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L 162 (298)
.|+++|.||+||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 455
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.96 E-value=0.014 Score=50.68 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhh
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
+-.++++|.+|+|||||++.|.+.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 447899999999999999999853
No 456
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.95 E-value=0.015 Score=50.94 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
++-.++++|.+|+|||||++.|.+.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3457899999999999999999853
No 457
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.93 E-value=0.01 Score=53.26 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
++-.++++|.+|+|||||++.|.+.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 4558999999999999999999853
No 458
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.93 E-value=0.015 Score=46.76 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
..|+++|.||+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999975
No 459
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.92 E-value=0.014 Score=50.86 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.+-.++++|.+|+|||||++.|.+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344789999999999999999985
No 460
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.92 E-value=0.015 Score=51.03 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
++-.++++|.+|+|||||++.|.+.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 3447899999999999999999853
No 461
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.91 E-value=0.017 Score=51.96 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
..+..++++|.+|+|||||++.|.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 5678999999999999999999975
No 462
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.90 E-value=0.017 Score=47.23 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.+..|+++|.||+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999963
No 463
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.88 E-value=0.027 Score=49.14 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=33.7
Q ss_pred HHHHHHHh--cCCCCeEEEEEeCCCC-CCcccHHHhccCCC--C---CCcEEEEEecCCCCChh
Q 022351 35 ATRAIADR--MPLVDIILEVRDARIP-FSSEFDQLRNHHPF--S---SSRRILVLNKMDLASPT 90 (298)
Q Consensus 35 ~~~~i~~~--l~~aDlVl~VvDa~~p-~~~~~~~l~~~l~~--~---~k~~IiVlNK~DL~~~~ 90 (298)
..+.+..+ ...+|++|+|+|+... +...+..+...+.. . .+|+++|+||+|+.+++
T Consensus 107 ~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 107 ALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 34444444 3479999999887542 22222233222211 1 26999999999998654
No 464
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.88 E-value=0.015 Score=49.81 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCchHHHHHHHhh
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
+-.++++|.+|+|||||++.|.+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 44789999999999999999985
No 465
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.87 E-value=0.015 Score=50.33 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHHhhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
-.++++|.+|+|||||++.|.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999853
No 466
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.86 E-value=0.014 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCchHHHHHHHhh
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
+-.++++|.+|+|||||++.|.+
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 44789999999999999999985
No 467
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.86 E-value=0.017 Score=50.76 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
++-.++++|.+|+|||||++.|.+
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344789999999999999999985
No 468
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.86 E-value=0.015 Score=51.45 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCchHHHHHHHhh
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
+-.++++|.+|+|||||++.|.+
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 44789999999999999999985
No 469
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.86 E-value=0.016 Score=51.04 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
++-.++++|.+|+|||||++.|.+.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3447899999999999999999853
No 470
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.84 E-value=0.012 Score=50.06 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=16.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHh-hh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLH-QI 165 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~-~~ 165 (298)
++..++++|.+|+|||||++.|. +.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34578999999999999999998 63
No 471
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.82 E-value=0.048 Score=48.26 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
..+..++++|.||+||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999964
No 472
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.81 E-value=0.017 Score=50.50 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
++-.++++|.+|+|||||++.|.+.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3447899999999999999999853
No 473
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.80 E-value=0.016 Score=46.71 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
..|+++|.||+||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 474
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.80 E-value=0.017 Score=50.13 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCchHHHHHHHhh
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
+-.++++|.+|+|||||++.|.+
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 44789999999999999999985
No 475
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.79 E-value=0.016 Score=46.31 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~ 164 (298)
.|+++|.||+||||+.+.|.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999963
No 476
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.75 E-value=0.018 Score=46.90 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLH 163 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~ 163 (298)
.+..|+++|.||+||||+.+.|.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999996
No 477
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.75 E-value=0.0093 Score=48.86 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHHhhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~ 165 (298)
.++++|.+|+|||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999853
No 478
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.74 E-value=0.015 Score=49.44 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCchHHHHHHHhh
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
+-.++++|.+|+|||||++.|.+
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999985
No 479
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.74 E-value=0.017 Score=49.80 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhh
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
+-.++++|.+|+|||||++.|.+.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 447899999999999999999853
No 480
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.73 E-value=0.016 Score=49.01 Aligned_cols=23 Identities=30% Similarity=0.231 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCchHHHHHHHhhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
-.++++|.+|+|||||++.|.+.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999865
No 481
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.71 E-value=0.017 Score=50.16 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHHhh
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
+-.++++|.+|+|||||++.|.+
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 44789999999999999999985
No 482
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.68 E-value=0.019 Score=50.37 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHhhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
.+-.++++|.+|+|||||++.|.+.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3447899999999999999999853
No 483
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.67 E-value=0.018 Score=46.77 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHHhh
Q 022351 143 VTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 143 ~~i~vvG~~nvGKSsliN~L~~ 164 (298)
..|++.|.||+||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999964
No 484
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.65 E-value=0.021 Score=53.62 Aligned_cols=64 Identities=9% Similarity=0.032 Sum_probs=44.9
Q ss_pred eEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHH----HHccCCCEEEEecC
Q 022351 48 IILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITF----FDQQNCPSFGVNSH 112 (298)
Q Consensus 48 lVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~----~~~~~~~vi~iSa~ 112 (298)
+|++|+|+..++...+.++.+.+. .+.|+|+|+||+|.+++.++....+. +...|.+++.+|..
T Consensus 151 ~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp EEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 577888988888777777777765 68999999999999987766554444 33457788888753
No 485
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.64 E-value=0.019 Score=48.28 Aligned_cols=24 Identities=29% Similarity=0.663 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
++..|+++|.||+||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999863
No 486
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.60 E-value=0.019 Score=50.82 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCchHHHHHHHhhh
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~~ 165 (298)
+-.++++|.+|+|||||++.|.+.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 447899999999999999999853
No 487
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.57 E-value=0.021 Score=47.37 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
++..|+++|.||+||||+.+.|.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345899999999999999999963
No 488
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.56 E-value=0.054 Score=51.79 Aligned_cols=25 Identities=20% Similarity=0.509 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
..+-.++++|.+|+|||||++.|.+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH
Confidence 4567899999999999999999975
No 489
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.54 E-value=0.02 Score=48.16 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHHhh
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...|+++|.+|+||||+.+.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999964
No 490
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.52 E-value=0.02 Score=49.85 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHHhh
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
+-.++++|.+|+|||||++.|.+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 44789999999999999999985
No 491
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.52 E-value=0.02 Score=47.09 Aligned_cols=21 Identities=19% Similarity=0.517 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~ 164 (298)
.|+++|.+|+||||+.+.|.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999974
No 492
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.52 E-value=0.019 Score=47.73 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHHhhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQI 165 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~~ 165 (298)
.++++|.+|+|||||++.|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5799999999999999999853
No 493
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.49 E-value=0.024 Score=46.93 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHHhh
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
+..|++.|.||+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999974
No 494
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.48 E-value=0.026 Score=48.43 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.++..++++|.+|+|||||++.|.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999976
No 495
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.47 E-value=0.035 Score=44.50 Aligned_cols=23 Identities=39% Similarity=0.640 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCchHHHHHHHhh
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...+++.|.||+|||+|++++..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999974
No 496
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.44 E-value=0.025 Score=47.05 Aligned_cols=25 Identities=36% Similarity=0.591 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
..+..|+++|.||+||||+.+.|.+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999999999975
No 497
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.44 E-value=0.022 Score=47.19 Aligned_cols=23 Identities=17% Similarity=0.554 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCchHHHHHHHhh
Q 022351 142 TVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 142 ~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
...|+++|.+|+||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999964
No 498
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.42 E-value=0.022 Score=46.30 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHhh
Q 022351 144 TVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 144 ~i~vvG~~nvGKSsliN~L~~ 164 (298)
.|++.|.||+||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 499
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.42 E-value=0.029 Score=45.76 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCchHHHHHHHhh
Q 022351 140 SDTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 140 ~~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
..+..|+++|.+|+||||+.+.|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4567899999999999999999963
No 500
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.41 E-value=0.025 Score=46.60 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHhh
Q 022351 141 DTVTVMLLGIPNVGKSALANSLHQ 164 (298)
Q Consensus 141 ~~~~i~vvG~~nvGKSsliN~L~~ 164 (298)
.+..|++.|.+|+||||+.+.|.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999974
Done!