BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022354
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V32|A Chain A, Solution Structure Of The SwibMDM2 DOMAIN OF THE
Hypothetical Protein At5g08430 From Arabidopsis Thaliana
Length = 101
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 66/88 (75%)
Query: 33 SKKVKFDGWGSIPLIEFLQSLGKDTTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDE 92
K+ +F GWGS LIEFL SLGKDT++ ISRYDV+D I KY+++ L+ KK+VV D+
Sbjct: 7 GKRFEFVGWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDK 66
Query: 93 RLLSLFGKKSFLRIKIYDLLEAHYAENQ 120
RL+ LFG ++ R+K+YDLLE HY ENQ
Sbjct: 67 RLVLLFGTRTIFRMKVYDLLEKHYKENQ 94
>pdb|3MSV|A Chain A, The Hypoxic Regulator Of Sterol Synthesis Nro1 Is A
Nuclear Import Adaptor
pdb|3MSV|B Chain B, The Hypoxic Regulator Of Sterol Synthesis Nro1 Is A
Nuclear Import Adaptor
Length = 393
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 7/134 (5%)
Query: 160 SCWAAIVPDNIKLVYLKRSLVQDLLKDSETFECKVVGSFVRVKSDPNDYLQKNSHQLLQV 219
+ W V D Y K + +L + TF + +S+ +D + K S L
Sbjct: 263 ALWLKSVVDPNTPAYYKLIAQEAVLNNYTTFAEYYMDLLDNSESNVDDLINKASSWLNNS 322
Query: 220 IGTKKVPGTDDKSTEILLKVSNFVKDIRIAT---LSDDNFSEEECEDLRQRVKDGLLKRP 276
+ T V T DKS E LLK+++ D+ S DN+ +E C +++ G+ P
Sbjct: 323 VDTWNVIYTLDKSPERLLKLADIKMDLAQIVQDEASQDNYLKEACNAIKEAQGSGVELSP 382
Query: 277 TVVSSLLLFMRNYS 290
V F+ YS
Sbjct: 383 DYVE----FVEAYS 392
>pdb|3QTN|B Chain B, Crystal Structure Of Nro1ETT1 PROTEIN FROM S. POMBE (LOW
RESOLUTION)
Length = 346
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 7/134 (5%)
Query: 160 SCWAAIVPDNIKLVYLKRSLVQDLLKDSETFECKVVGSFVRVKSDPNDYLQKNSHQLLQV 219
+ W V D Y K + +L + TF + +S+ +D + K S L
Sbjct: 216 ALWLKSVVDPNTPAYYKLIAQEAVLNNYTTFAEYYMDLLDNSESNVDDLINKASSWLNNS 275
Query: 220 IGTKKVPGTDDKSTEILLKVSNFVKDIRIAT---LSDDNFSEEECEDLRQRVKDGLLKRP 276
+ T V T DKS E LLK+++ D+ S DN+ +E C +++ G+ P
Sbjct: 276 VDTWNVIYTLDKSPERLLKLADIKMDLAQIVQDEASQDNYLKEACNAIKEAQGSGVELSP 335
Query: 277 TVVSSLLLFMRNYS 290
V F+ YS
Sbjct: 336 DYVE----FVEAYS 345
>pdb|3QTM|A Chain A, Crystal Structure Of Nro1ETT1 PROTEIN FROM S. POMBE (HIGH
RESOLUTION)
pdb|3QTM|B Chain B, Crystal Structure Of Nro1ETT1 PROTEIN FROM S. POMBE (HIGH
RESOLUTION)
Length = 346
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 7/134 (5%)
Query: 160 SCWAAIVPDNIKLVYLKRSLVQDLLKDSETFECKVVGSFVRVKSDPNDYLQKNSHQLLQV 219
+ W V D Y K + +L + TF +S+ +D + K S L
Sbjct: 216 ALWLKSVVDPNTPAYYKLIAQEAVLNNYTTFAEYYXDLLDNSESNVDDLINKASSWLNNS 275
Query: 220 IGTKKVPGTDDKSTEILLKVSNFVKDIRIAT---LSDDNFSEEECEDLRQRVKDGLLKRP 276
+ T V T DKS E LLK+++ D+ S DN+ +E C +++ G+ P
Sbjct: 276 VDTWNVIYTLDKSPERLLKLADIKXDLAQIVQDEASQDNYLKEACNAIKEAQGSGVELSP 335
Query: 277 TVVSSLLLFMRNYS 290
V F+ YS
Sbjct: 336 DYVE----FVEAYS 345
>pdb|1ZVO|C Chain C, Semi-Extended Solution Structure Of Human Myeloma
Immunoglobulin D Determined By Constrained X-Ray
Scattering
pdb|1ZVO|D Chain D, Semi-Extended Solution Structure Of Human Myeloma
Immunoglobulin D Determined By Constrained X-Ray
Scattering
Length = 512
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 14/55 (25%)
Query: 173 VYLKRSLVQDL-LKDSETFECKVVGSFVRVKSDPNDYLQKNSHQLLQVIGTKKVP 226
VYL VQDL L+D TF C VVGS + K++H +V G KVP
Sbjct: 299 VYLLTPAVQDLWLRDKATFTCFVVGSDL-----------KDAHLTWEVAG--KVP 340
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|C Chain C, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|D Chain D, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HY0|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY0|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY1|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
pdb|3HY1|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
Length = 441
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 164 AIVPDNIKLVYLKRSLVQ------DLLKDSETFECKVVGSFVRVKSDPNDYLQKNSHQLL 217
++P N Y+ R +++ ++L ETF K+VG + V + L++ Q+
Sbjct: 297 GVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVE 356
Query: 218 QVIGTKK 224
QV+ T++
Sbjct: 357 QVLKTEE 363
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Alasa
pdb|3HXV|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Glysa
pdb|3HXW|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Sersa
pdb|3HXX|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp
pdb|3HXY|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp, Ala-Amp And Pcp
Length = 441
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 164 AIVPDNIKLVYLKRSLVQ------DLLKDSETFECKVVGSFVRVKSDPNDYLQKNSHQLL 217
++P N Y+ R +++ ++L ETF K+VG + V + L++ Q+
Sbjct: 297 GVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVE 356
Query: 218 QVIGTKK 224
QV+ T++
Sbjct: 357 QVLKTEE 363
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,013,116
Number of Sequences: 62578
Number of extensions: 306361
Number of successful extensions: 755
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 749
Number of HSP's gapped (non-prelim): 12
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)