BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022354
(298 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430 OS=Arabidopsis thaliana
GN=At5g08430 PE=1 SV=2
Length = 553
Score = 279 bits (714), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 148/268 (55%), Positives = 194/268 (72%), Gaps = 12/268 (4%)
Query: 12 WVPEYDEPLSPQLTNLKRRGRSKKVKFDGWGSIPLIEFLQSLGKDTTQQISRYDVTDIIN 71
WV E + ++ KR+ R K+ +F GWGS LIEFL SLGKDT++ ISRYDV+D I
Sbjct: 6 WVEEGN---GSATSSRKRKARPKRFEFVGWGSRQLIEFLHSLGKDTSEMISRYDVSDTIA 62
Query: 72 KYVNENKLVHSVKKKRVVSDERLLSLFGKKSFLRIKIYDLLEAHYAENQFESDDDFLFSS 131
KY+++ L+ KK+VV D+RL+ LFG ++ R+K+YDLLE HY ENQ +SD DFL+
Sbjct: 63 KYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKENQDDSDFDFLY-E 121
Query: 132 DEENNLFSSEKQKSRKVPLKKLCLETPKSCWAAIVPDNIKLVYLKRSLVQDLLKDSETFE 191
DE + SEK R + K P+ +AAIV DNIKL+YL++SLVQ+LLK +TFE
Sbjct: 122 DEPQIICHSEKIAKRTSKVVK----KPRGTFAAIVSDNIKLLYLRKSLVQELLKSPDTFE 177
Query: 192 CKVVGSFVRVKSDPNDYLQKNSHQLLQVIGTKKVPGTDDKSTEILLKVSNFVKDIRIATL 251
K++GSFVR+KSDPNDYLQK +QL+QV G KK GTDD LL+V+N+VKD+ I+ L
Sbjct: 178 GKMLGSFVRIKSDPNDYLQKYPYQLVQVTGVKKEHGTDD----FLLQVTNYVKDVSISVL 233
Query: 252 SDDNFSEEECEDLRQRVKDGLLKRPTVV 279
SDDNFS+EECEDL QR+K+GLLK+PT+V
Sbjct: 234 SDDNFSQEECEDLHQRIKNGLLKKPTIV 261
>sp|Q9SD34|C3H44_ARATH Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis
thaliana GN=At3g51120 PE=2 SV=3
Length = 1292
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 140/273 (51%), Gaps = 32/273 (11%)
Query: 34 KKVKFD-GWGSIPLIEFLQSLGKDTTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDE 92
KK D W + L+EF+ + T +S++DV ++ Y+ + L ++K +V+ D+
Sbjct: 311 KKAPGDTSWATKELLEFVSFMKNGDTSVLSQFDVQGLLLDYIKKKNLRDPLQKSQVLCDQ 370
Query: 93 RLLSLFGKKSFLRIKIYDLLEAHY--------AENQFESDDDFLFSSDEENNLF------ 138
L+ LFGK+ ++ LLE+H A+ + S EE+++
Sbjct: 371 MLVKLFGKQRVGHFEMLKLLESHVLIQEKPKGAKTTNGETTHAVPSQIEEDSVHDPMVRD 430
Query: 139 ---SSEKQKSRKVPLKKLCLETPKSCWAAIVPDNIKLVYLKRSLVQDLLKDSETFECKVV 195
++ +V + L +AAI NI L+YL+R ++ LL D + KVV
Sbjct: 431 RRRKMRRKTDGRVQNENL------DAYAAIDVHNINLIYLRRKFLESLLDDINKVDEKVV 484
Query: 196 GSFVRVKSDPNDYLQK-NSHQLLQVIGTKKVPGT---DDKSTEILLKVSNFVKD--IRIA 249
G+ +R+K +D QK + H+L+QV+GT K + K+T+++L++ N K I I
Sbjct: 485 GTILRIKVSGSD--QKLDIHRLVQVVGTSKAIASYQLGAKTTDVMLEILNLDKREVISID 542
Query: 250 TLSDDNFSEEECEDLRQRVKDGLLKRPTVVSSL 282
LSD N +E+EC+ LRQ +K GL KR TVV L
Sbjct: 543 QLSDQNITEDECKRLRQSIKCGLNKRLTVVDIL 575
>sp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana
GN=NERD PE=1 SV=3
Length = 1773
Score = 98.2 bits (243), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 137/260 (52%), Gaps = 27/260 (10%)
Query: 41 WGSIPLIEFLQSLGKDTTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGK 100
W S L++ + + + + +V ++ Y+ L +K +V+ D RL +LFGK
Sbjct: 807 WASKELLDLVVHMRRGDRSFLPMLEVQTLLLAYIKRYNLRDPRRKSQVICDSRLQNLFGK 866
Query: 101 KSFLRIKIYDLLEAHYAENQFESDDDF---LFSSDEENNLFSSEKQKSRKVPLKKLCLET 157
++ +LL++H+ + + DD + ++E N++ E P+K +
Sbjct: 867 SHVGHFEMLNLLDSHFLKKEQNQADDIQGDIVDTEEPNHVDVDENLDH---PVKSGKDKK 923
Query: 158 PKSC--------------WAAIVPDNIKLVYLKRSLVQDLLKDSETFECKVVGSFVRVKS 203
K+ +AA+ NI L+YL+RSLV+DLL+DS FE KV +FVR++
Sbjct: 924 RKTRKKNVRKGRQSNLDDFAAVDMHNINLIYLRRSLVEDLLEDSTAFEEKVASAFVRLRI 983
Query: 204 DPNDYLQKNSHQLLQVIGTKKVP---GTDDKSTEILLKVSNFVKD--IRIATLSDDNFSE 258
N +++ ++L+QV+GT K P K+T+ +L++ N K I I +S+ +F+E
Sbjct: 984 SGNQ--KQDLYRLVQVVGTSKAPEPYKVGKKTTDYVLEILNLDKTEVISIDIISNQDFTE 1041
Query: 259 EECEDLRQRVKDGLLKRPTV 278
+EC+ L+Q +K GL+ R TV
Sbjct: 1042 DECKRLKQSIKCGLINRLTV 1061
>sp|Q91FL8|VF306_IIV6 Putative SWIB domain-containing protein 306R OS=Invertebrate
iridescent virus 6 GN=IIV6-306R PE=3 SV=1
Length = 312
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 57 TTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKSF 103
TT IS DV I + Y+ EN L +V K++++ D+ L SLF +SF
Sbjct: 258 TTSLISWDDVNKIFSDYIRENSLKDTVNKRKIILDDNLKSLFKSRSF 304
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 40 GWGSIPLI--EFLQSLGKDTTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSL 97
G G + +I + + LG D ++ SR DVT I K+V E KL + KK ++ D L+ L
Sbjct: 141 GLGKLRVITNDLAKFLGCDPSEMKSRNDVTKAICKHVEEKKLQNQENKKIIMCDTMLIDL 200
Query: 98 FGKKSFLRIKIYDLLEAHYAENQFESDDDF-LFSSDEENNLFSSEKQKSRKVPLKKLC 154
+ + + Y +++H E + L+ S+E + ++S + K C
Sbjct: 201 LRLEPNAQ-RTYTEIQSHLNHLFIEKTSELTLYPSEELIKFYDEHSKQSSSIGTNKWC 257
>sp|Q5UQ74|YR508_MIMIV Putative SWIB domain-containing protein R508 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R508 PE=4 SV=1
Length = 335
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 61 ISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKSFLRIKIYDL---LEAHYA 117
+SR VT+++ KY +NK+ +S K+ ++ + ++ LFG K I Y++ L+ Y
Sbjct: 266 LSRSKVTELMYKYFTDNKMYNSKTKREIIPNSKIKKLFGMKEGDIITFYNMQTWLKKVYN 325
Query: 118 ENQ 120
ENQ
Sbjct: 326 ENQ 328
>sp|Q5FQL0|KUP_GLUOX Probable potassium transport system protein kup OS=Gluconobacter
oxydans (strain 621H) GN=kup PE=3 SV=1
Length = 675
Score = 34.7 bits (78), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%)
Query: 12 WVPEYDEPLSPQLTNLKRRGRSKKVKFDGWGSIPLIEFLQSLGKDTTQQISRYDVTDIIN 71
WVP +S + +RGRS S+P+ FL L + T ++ V N
Sbjct: 477 WVPLAIGIISTIIMTTWKRGRSLIAARQQADSMPMGSFLARLPQSRTIRVPGLAVFLTAN 536
Query: 72 KYVNENKLVHSVKKKRVVSDERL 94
+ N L+H++K +V+ D L
Sbjct: 537 PDIVPNSLLHNLKHNKVLHDHIL 559
>sp|Q05024|TRI1_YEAST Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TRI1 PE=1 SV=1
Length = 226
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 23/115 (20%)
Query: 43 SIPLIEFLQSLGKDTTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKS 102
S PL +FL S +++ R V +I +Y+ E+ L + ++ ++ DE++ +FGKK
Sbjct: 127 SAPLQKFLGS------EELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFGKKM 180
Query: 103 FLRIKIYDLLEAHYAENQFESDDDFLFSSDEENNLFSSEKQKSRKVPLKKLCLET 157
+ + LL H LF+ DE +++ ++ P K++ LE
Sbjct: 181 TM-FSMNKLLTKH------------LFNPDE----IVKHEEEQKQTPEKEIKLEN 218
>sp|Q9USJ7|ETT1_SCHPO Negative regulator of ofd1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=nro1 PE=1 SV=1
Length = 393
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 7/134 (5%)
Query: 160 SCWAAIVPDNIKLVYLKRSLVQDLLKDSETFECKVVGSFVRVKSDPNDYLQKNSHQLLQV 219
+ W V D Y K + +L + TF + +S+ +D + K S L
Sbjct: 263 ALWLKSVVDPNTPAYYKLIAQEAVLNNYTTFAEYYMDLLDNSESNVDDLINKASSWLNNS 322
Query: 220 IGTKKVPGTDDKSTEILLKVSNFVKDIRIAT---LSDDNFSEEECEDLRQRVKDGLLKRP 276
+ T V T DKS E LLK+++ D+ S DN+ +E C +++ G+ P
Sbjct: 323 VDTWNVIYTLDKSPERLLKLADIKMDLAQIVQDEASQDNYLKEACNAIKEAQGSGVELSP 382
Query: 277 TVVSSLLLFMRNYS 290
V F+ YS
Sbjct: 383 DYVE----FVEAYS 392
>sp|A4WDQ6|SYA_ENT38 Alanine--tRNA ligase OS=Enterobacter sp. (strain 638) GN=alaS PE=3
SV=1
Length = 875
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 164 AIVPDNIKLVYLKRSLVQ------DLLKDSETFECKVVGSFVRVKSDPNDYLQKNSHQLL 217
++P N Y+ R +++ ++L +TF K+VG V V D + L++ Q+
Sbjct: 298 GVIPSNENRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVGPLVGVMGDAGEELKRQQSQVE 357
Query: 218 QVIGTKK 224
QV+ T++
Sbjct: 358 QVLKTEE 364
>sp|Q5GSS5|SYA_WOLTR Alanine--tRNA ligase OS=Wolbachia sp. subsp. Brugia malayi (strain
TRS) GN=alaS PE=3 SV=1
Length = 875
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
Query: 228 TDDKSTEILLKVSNFVKD--IRIATLSDDNF 256
TDDKS EI KVS F D IRIAT DDNF
Sbjct: 131 TDDKSYEIWRKVSGFSNDKIIRIAT--DDNF 159
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,069,205
Number of Sequences: 539616
Number of extensions: 4584724
Number of successful extensions: 14081
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 14050
Number of HSP's gapped (non-prelim): 49
length of query: 298
length of database: 191,569,459
effective HSP length: 117
effective length of query: 181
effective length of database: 128,434,387
effective search space: 23246624047
effective search space used: 23246624047
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)