Query 022354
Match_columns 298
No_of_seqs 181 out of 440
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 02:53:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022354.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022354hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00719 Plus3 Short conserv 100.0 2.3E-32 5E-37 224.0 10.8 104 164-269 1-109 (109)
2 PF03126 Plus-3: Plus-3 domain 100.0 2.2E-30 4.8E-35 211.1 6.8 102 168-270 1-107 (108)
3 KOG1946 RNA polymerase I trans 100.0 2E-29 4.4E-34 232.3 6.2 134 39-175 96-240 (240)
4 KOG2402 Paf1/RNA polymerase II 99.9 3.7E-26 8E-31 228.3 12.2 132 161-296 213-349 (525)
5 PF02201 SWIB: SWIB/MDM2 domai 99.9 7.1E-23 1.5E-27 158.2 1.8 70 42-117 7-76 (76)
6 COG5296 Transcription factor i 99.9 1.2E-21 2.6E-26 190.3 10.5 131 160-295 205-340 (521)
7 smart00151 SWIB SWI complex, B 99.9 6.5E-22 1.4E-26 153.2 7.0 71 42-118 7-77 (77)
8 COG5531 SWIB-domain-containing 99.7 2.3E-18 5E-23 158.6 5.8 71 42-118 127-197 (237)
9 PRK14724 DNA topoisomerase III 99.7 5.4E-18 1.2E-22 181.8 7.1 71 41-117 917-987 (987)
10 PRK06319 DNA topoisomerase I/S 99.3 2.2E-12 4.8E-17 137.2 4.6 71 42-118 790-860 (860)
11 KOG2570 SWI/SNF transcription 99.2 6.6E-12 1.4E-16 123.3 2.4 146 42-197 211-372 (420)
12 KOG2522 Filamentous baseplate 83.5 1.4 3.1E-05 45.2 4.3 54 45-98 366-419 (560)
13 PF10281 Ish1: Putative stress 65.6 12 0.00026 25.1 3.8 37 38-74 1-38 (38)
14 PRK05350 acyl carrier protein; 64.2 8.3 0.00018 29.6 3.2 57 61-120 2-58 (82)
15 PRK05828 acyl carrier protein; 51.8 28 0.0006 27.5 4.3 57 61-120 1-57 (84)
16 cd00238 ERp29c ERp29 and ERp38 48.2 20 0.00044 28.9 3.1 40 252-291 54-93 (93)
17 CHL00124 acpP acyl carrier pro 42.5 31 0.00067 26.1 3.2 58 61-121 1-58 (82)
18 PRK12449 acyl carrier protein; 42.1 48 0.001 24.9 4.2 57 61-120 1-57 (80)
19 PF06627 DUF1153: Protein of u 35.5 21 0.00047 29.1 1.4 24 254-277 59-82 (90)
20 PHA02696 hypothetical protein; 35.0 24 0.00053 27.7 1.5 22 247-268 40-61 (79)
21 PTZ00171 acyl carrier protein; 29.0 72 0.0016 27.9 3.7 61 58-121 63-123 (148)
22 PF02037 SAP: SAP domain; Int 28.1 1.4E+02 0.0029 19.7 4.1 32 41-74 4-35 (35)
23 PF07749 ERp29: Endoplasmic re 27.8 32 0.0007 27.6 1.2 37 254-291 58-94 (95)
24 PF01320 Colicin_Pyocin: Colic 23.3 1.2E+02 0.0026 24.5 3.7 36 254-289 8-44 (85)
25 KOG0747 Putative NAD+-dependen 21.0 1.8E+02 0.004 28.9 5.1 57 56-113 249-320 (331)
No 1
>smart00719 Plus3 Short conserved domain in transcriptional regulators. Plus3 domains occur in the Saccharomyces cerevisiae Rtf1p protein, which interacts with Spt6p, and in parsley CIP, which interacts with the bZIP protein CPRF1.
Probab=99.98 E-value=2.3e-32 Score=224.04 Aligned_cols=104 Identities=48% Similarity=0.669 Sum_probs=97.1
Q ss_pred cccccccceeeeeHHHHHHHhcCcccccccccccEEEEecCCCCCcCccceeEEEEEeeeecCCC---CCcccceEEEee
Q 022354 164 AIVPDNIKLVYLKRSLVQDLLKDSETFECKVVGSFVRVKSDPNDYLQKNSHQLLQVIGTKKVPGT---DDKSTEILLKVS 240 (298)
Q Consensus 164 ai~~~ninlIyL~Rslve~ll~~p~~F~~kVvG~FVRIki~~~~~~~k~~YRlvqV~gv~~~~e~---g~~~Tni~L~v~ 240 (298)
|++.+||++|||+|+.+++||+.| +|+++|+||||||+||++++++ ++||||||+||.++++. |++.||++|.|+
T Consensus 1 ~~~l~~l~~i~L~R~~l~~~~~~p-~Fe~~v~GcFVRv~ig~~~~~~-~~Yrl~qI~gv~~~~k~Y~~~~~~t~~~L~v~ 78 (109)
T smart00719 1 AIVFDNLNLLRLRRSLVEELLKPP-TFESKVVGCFVRVKIGPNDQKQ-PIYRLVQVTGVKEADKPYELGGKTTNVLLEVL 78 (109)
T ss_pred CCChHHhheEEEEHHHHHHHhcCC-chhHhceEeEEEEEECCCCCCC-CeEEEEEEeeEEecCcceecCCceeeEEEEEe
Confidence 468899999999999999999999 9999999999999999999987 89999999999997765 889999999998
Q ss_pred C--CceeeEeecccCCCCCHHHHHHHHHHHH
Q 022354 241 N--FVKDIRIATLSDDNFSEEECEDLRQRVK 269 (298)
Q Consensus 241 ~--~~k~~~I~~iSn~dFTeeEc~rl~q~~~ 269 (298)
+ ..+.|+|++|||++|||+||++|++.|+
T Consensus 79 ~g~~~~~~~i~~iSn~~fte~E~~~w~~~~~ 109 (109)
T smart00719 79 NGDSEKVVQINFISNQDFTEEEFQRWKQAIK 109 (109)
T ss_pred cCCceEEEEEEEecCCCCCHHHHHHHHHHhC
Confidence 6 4578999999999999999999999884
No 2
>PF03126 Plus-3: Plus-3 domain; InterPro: IPR004343 The yeast Paf1 complex consists of Pfa1, Rtf1, Cdc73, Ctr9, and Leo1. The complex regulates histone H2B ubiquitination, histone H3 methylation, RNA polymerase II carboxy-terminal domain (CTD) Ser2 phosphorylation, and RNA 3' end processing. The conservation of Paf1 complex function in higher eukaryotes has been confirmed in human cells, Drosophila and Arabidopsis. The Plus3 domain spans the most conserved regions of the Rtf1 protein and is surrounded by regions of low complexity and coiled-coil propensity []. It contains only a limited number of highly conserved amino acids, among which are three positively charged residues that gave the Plus3 domain its name. The capacity to bind single-stranded DNA is at least one function of the Plus3 domain []. The plus-3 domain is about 90 residues in length and is often found associated with the GYF domain (IPR003169 from INTERPRO). The Plus3 domain structure consists of six alpha helices intervened by a sequence of six beta strands in a mixed alpha/beta topology. Beta strands 1, 2, 5, and 6 compose a four-stranded antiparallel beta sheet with a beta-hairpin insertion formed by strands 3 and 4. The N-terminal helices alpha1-alpha3 and C-terminal helix alpha6 pack together to form an alpha subdomain, while the beta strands and the small 3(10) helix alpha 4 form a beta subdomain. The two subdomains pack together to form a compact, globular protein [].; GO: 0003677 DNA binding, 0006352 transcription initiation, DNA-dependent, 0016570 histone modification, 0005634 nucleus; PDB: 2BZE_A 3U1U_B 2DB9_A.
Probab=99.96 E-value=2.2e-30 Score=211.09 Aligned_cols=102 Identities=35% Similarity=0.499 Sum_probs=86.8
Q ss_pred cccceeeeeHHHHHHHhcCcccccccccccEEEEecCCCCCcCccceeEEEEEeeeecCCC---CCcccceEEEeeC--C
Q 022354 168 DNIKLVYLKRSLVQDLLKDSETFECKVVGSFVRVKSDPNDYLQKNSHQLLQVIGTKKVPGT---DDKSTEILLKVSN--F 242 (298)
Q Consensus 168 ~ninlIyL~Rslve~ll~~p~~F~~kVvG~FVRIki~~~~~~~k~~YRlvqV~gv~~~~e~---g~~~Tni~L~v~~--~ 242 (298)
+||++|||+|++|++||++| +|+++|+||||||+||++++++.++|||+||+||.+.++. |++.||++|.|.+ .
T Consensus 1 e~i~~i~l~Rs~l~~~~~~P-~Fe~~v~G~fVRv~ig~~~~~~~~~Yrl~qI~~v~~~~k~Y~~~~~~t~~~L~l~~g~~ 79 (108)
T PF03126_consen 1 EDIKRIRLSRSQLEKWLFKP-FFEDAVVGCFVRVNIGPNDYTQNPVYRLCQIVGVKEGKKPYKLGSKKTNKYLVLRHGNS 79 (108)
T ss_dssp HHHHHTBE-HHHHHHHTTST-THHHHHTT-EEEEEEETTSSS-E--EEEEEEEEEEEEEEEEEETTEEEEEEEEEEETTE
T ss_pred CchHeEEEEHHHHHHHHcCC-ChhHheeEEEEEEEecCCCCCCceeEEEEEEEEEecccccEecCCeEEEEEEEEEECCc
Confidence 58999999999999999999 9999999999999999999988678999999999998843 8999999999997 4
Q ss_pred ceeeEeecccCCCCCHHHHHHHHHHHHc
Q 022354 243 VKDIRIATLSDDNFSEEECEDLRQRVKD 270 (298)
Q Consensus 243 ~k~~~I~~iSn~dFTeeEc~rl~q~~~~ 270 (298)
.+.|+|++|||++|||+||++|++.|++
T Consensus 80 ~r~~~i~~vSn~~~te~E~~~w~~~~~~ 107 (108)
T PF03126_consen 80 ERDFPIDMVSNSPFTEEEFERWKQSCEK 107 (108)
T ss_dssp EEEEEGGGBBSS---HHHHHHHHHHH--
T ss_pred eeEEEeEeeECCCCCHHHHHHHHHHhcc
Confidence 5799999999999999999999999986
No 3
>KOG1946 consensus RNA polymerase I transcription factor UAF [Transcription]
Probab=99.95 E-value=2e-29 Score=232.35 Aligned_cols=134 Identities=34% Similarity=0.511 Sum_probs=100.3
Q ss_pred cCCCCHHHHHHHHhcCCCC-CCccCHHHHHHHHHHHHHhcCCCCCcCCcccccchhhhhhhCCCccchHHHHHHHHhccc
Q 022354 39 DGWGSIPLIEFLQSLGKDT-TQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKSFLRIKIYDLLEAHYA 117 (298)
Q Consensus 39 ~~w~S~eL~efl~~~g~~~-~~~lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDekL~~LFgk~~v~~f~m~klL~~H~~ 117 (298)
.+|||..|..|+.+|++++ +++|||++|++.||+|||+||||||.||+.|+||++|++|||+++|+||+|++||.+||.
T Consensus 96 ~~~g~~kl~~ls~~L~~~~G~~~lsR~~vvk~iw~YIke~nLqDP~nkr~IlCDekL~~iF~~k~v~~fem~KLL~~H~~ 175 (240)
T KOG1946|consen 96 ASWGSTKLIPLSPSLARFVGTSELSRTDVVKKIWAYIKEHNLQDPKNKREILCDEKLKSIFGKKRVGMFEMLKLLTKHFL 175 (240)
T ss_pred cCcCcccccccCHHHHhhcccccccHHHHHHHHHHHHHHhccCCccccCeeeeHHHHHHHhccCccceeeHHHHHHHhcc
Confidence 4499999998888888887 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC------C--CCccC-ccccccccChhh-hhccccccccccccCCccccccccccccceeee
Q 022354 118 ENQFESD------D--DFLFS-SDEENNLFSSEK-QKSRKVPLKKLCLETPKSCWAAIVPDNIKLVYL 175 (298)
Q Consensus 118 ~~~~~~~------d--~~~~~-sedd~~~~~~~k-~~~r~~~~k~~~~~~~~~~~aai~~~ninlIyL 175 (298)
++++.++ + +.... .+.+.. ..++. .+.++...++ .-.+...||++..+|++++||
T Consensus 176 ~~~d~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~e~~~k~~~~~--~~~~~~~~a~~~~~~~~l~~~ 240 (240)
T KOG1946|consen 176 KNQDMVGTDLKQGEETETKEFKEEEDKS-QDPCLSEKEAKETKKV--VKKPRGTFAAIVSDNIKLLYL 240 (240)
T ss_pred CccccccchhhcCccccccccccccccc-cccchhhhhhhhhhhc--ccccccchhhhhccccccccC
Confidence 9877531 0 11111 111221 12221 1122221111 111223999999999999996
No 4
>KOG2402 consensus Paf1/RNA polymerase II complex, RTF1 component (involved in regulation of TATA box-binding protein) [Transcription]
Probab=99.93 E-value=3.7e-26 Score=228.29 Aligned_cols=132 Identities=21% Similarity=0.220 Sum_probs=121.6
Q ss_pred ccccccccccceeeeeHHHHHHHhcCcccccccccccEEEEecCCCCCcCccceeEEEEEeeeecCCC---CCcccceEE
Q 022354 161 CWAAIVPDNIKLVYLKRSLVQDLLKDSETFECKVVGSFVRVKSDPNDYLQKNSHQLLQVIGTKKVPGT---DDKSTEILL 237 (298)
Q Consensus 161 ~~aai~~~ninlIyL~Rslve~ll~~p~~F~~kVvG~FVRIki~~~~~~~k~~YRlvqV~gv~~~~e~---g~~~Tni~L 237 (298)
.+.. +..++|+++|+|+.|+.||+.| +|+++|+||||||+||+.+. +++|||++|+||.++.+. |.+.||.+|
T Consensus 213 ~~v~-~~~dln~~rlsR~~vak~~~~P-~Fe~~V~gCfvRv~ig~~~~--~p~YRv~~I~gV~es~k~Y~l~~~~Tnk~l 288 (525)
T KOG2402|consen 213 ARVP-SISDLNALRLSRHKVAKWLFSP-FFESTVTGCFVRVGIGGEGS--KPVYRVAEIVGVLESDKPYKLEGVKTNKYL 288 (525)
T ss_pred cCCC-CHHHHHHHHhhHHHHHHHHhhh-HHHHHhhhheEEeeecCcCC--CCceeEEEEeeecccCccccccceeeccee
Confidence 3444 7889999999999999999999 99999999999999999955 589999999999998776 899999999
Q ss_pred EeeCC--ceeeEeecccCCCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhhhhccCCC
Q 022354 238 KVSNF--VKDIRIATLSDDNFSEEECEDLRQRVKDGLLKRPTVVSSLLLFMRNYSLFCSPY 296 (298)
Q Consensus 238 ~v~~~--~k~~~I~~iSn~dFTeeEc~rl~q~~~~g~~~rpTv~di~~~~~~~~~~~~~~~ 296 (298)
.|++- .++|+|++|||++||++||++|+..|+..++..||+..|..|.+.++.+.+-+|
T Consensus 289 ~~~~G~s~r~f~m~~iSn~~f~e~Efq~w~~~~~~s~~~~PT~~~i~~K~~~i~~a~~~~~ 349 (525)
T KOG2402|consen 289 RVRHGRSERVFRMNFISNGEFTEEEFQDWLRACKNSHGIMPTVDLISRKKLDIVKALNYRL 349 (525)
T ss_pred eeecCcchhhcchhhhcCCcccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhcCcc
Confidence 99973 368999999999999999999999999999999999999999999999887655
No 5
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []. The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....
Probab=99.86 E-value=7.1e-23 Score=158.17 Aligned_cols=70 Identities=36% Similarity=0.511 Sum_probs=65.3
Q ss_pred CCHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHhcCCCCCcCCcccccchhhhhhhCCCccchHHHHHHHHhccc
Q 022354 42 GSIPLIEFLQSLGKDTTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKSFLRIKIYDLLEAHYA 117 (298)
Q Consensus 42 ~S~eL~efl~~~g~~~~~~lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDekL~~LFgk~~v~~f~m~klL~~H~~ 117 (298)
.|++|++|+| ..++||++|++.||+|||+||||||++|+.|+||++|+.|||+++|.+++|+++|.+|+.
T Consensus 7 ls~~L~~~lg------~~~~sr~~v~~~lw~YIk~~~L~dp~~k~~I~cD~~L~~lf~~~~v~~~~i~~~l~~hl~ 76 (76)
T PF02201_consen 7 LSPELAEFLG------EDELSRSEVVKRLWQYIKENNLQDPKDKRIIICDEKLKKLFGKDSVNFFEIPKLLKPHLI 76 (76)
T ss_dssp HHHHHHHHTT-------SCEEHHHHHHHHHHHHHHTTSBESSSTTEEE-TTSHHHHHHTSECSEEETTHHHHHHHE
T ss_pred CCHHHHHHhC------CCCCCHHHHHHHHHHHHHHhcCCCcccCceEecCHHHHHHhCCCeecHhhHHHHHHHhcC
Confidence 5899999997 566999999999999999999999999999999999999999999999999999999974
No 6
>COG5296 Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
Probab=99.86 E-value=1.2e-21 Score=190.34 Aligned_cols=131 Identities=20% Similarity=0.216 Sum_probs=120.0
Q ss_pred cccccccccccceeeeeHHHHHHHhcCcccccccccccEEEEecCCCCCcCccceeEEEEEeeeecCCC---CCcccceE
Q 022354 160 SCWAAIVPDNIKLVYLKRSLVQDLLKDSETFECKVVGSFVRVKSDPNDYLQKNSHQLLQVIGTKKVPGT---DDKSTEIL 236 (298)
Q Consensus 160 ~~~aai~~~ninlIyL~Rslve~ll~~p~~F~~kVvG~FVRIki~~~~~~~k~~YRlvqV~gv~~~~e~---g~~~Tni~ 236 (298)
++||. --++|.++++|++|+++|++| .|++.|+|||+||+||..++ +-+||||+|-++....+. |+..||.+
T Consensus 205 d~~a~--l~Dfn~~rvgR~~VA~~~f~P-~Fed~v~Gcf~Rv~Ig~R~g--~~vyRiv~V~~~~~~~kpy~~~~v~Tn~y 279 (521)
T COG5296 205 DDFAE--LYDFNQCRVGRDMVARNVFKP-IFEDEVIGCFTRVRIGERGG--YLVYRIVGVGKGSTYSKPYGRKEVKTNRY 279 (521)
T ss_pred chhhh--hhhhhhhhhhHHHHHHHhccc-chhhhhcceeeEEEecccCC--eeEEEEEEeccceeccccccccceeeeee
Confidence 66666 367899999999999999999 99999999999999996554 469999999999997775 89999999
Q ss_pred EEeeC-Cc-eeeEeecccCCCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhhhhccCC
Q 022354 237 LKVSN-FV-KDIRIATLSDDNFSEEECEDLRQRVKDGLLKRPTVVSSLLLFMRNYSLFCSP 295 (298)
Q Consensus 237 L~v~~-~~-k~~~I~~iSn~dFTeeEc~rl~q~~~~g~~~rpTv~di~~~~~~~~~~~~~~ 295 (298)
|.|++ .. ++|+|+.|||++|.++||+||+.+++.|.+..|++.-+++|++.+-.|++.|
T Consensus 280 l~v~~Gr~~kvF~in~~Sn~pf~~~eyQr~~r~~~~~kl~~PS~~~v~~k~~~l~d~~~~~ 340 (521)
T COG5296 280 LDVSTGRTYKVFRINNISNSPFLREEYQRVWRSFKVGKLSMPSIAKVKEKYDKLVDTMGRR 340 (521)
T ss_pred EeeecCcceeeeEeecccCCcccHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhCCc
Confidence 99997 44 6899999999999999999999999999999999999999999999998876
No 7
>smart00151 SWIB SWI complex, BAF60b domains.
Probab=99.86 E-value=6.5e-22 Score=153.17 Aligned_cols=71 Identities=23% Similarity=0.420 Sum_probs=68.2
Q ss_pred CCHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHhcCCCCCcCCcccccchhhhhhhCCCccchHHHHHHHHhcccc
Q 022354 42 GSIPLIEFLQSLGKDTTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKSFLRIKIYDLLEAHYAE 118 (298)
Q Consensus 42 ~S~eL~efl~~~g~~~~~~lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDekL~~LFgk~~v~~f~m~klL~~H~~~ 118 (298)
.|++|++|+| .+++||.+|++.||+|||+||||||++|+.|.||+.|+.+||++++.+++|+++|.+|+.+
T Consensus 7 ls~~L~~~lg------~~~~tr~ev~~~lw~YIk~n~L~d~~~k~~i~~D~~L~~l~~~~~v~~~~~~~ll~~Hl~~ 77 (77)
T smart00151 7 LSPELAKVLG------APEMTRTEIIKRLWEYIKEHNLQDPQNKREILCDSKLEQIFGKDRMDMFEMNKLLTPHLIK 77 (77)
T ss_pred CCHHHHHHhC------CCcCcHHHHHHHHHHHHHHhcccCCccCCEEecCHHHHHHHCcCeecHHHHHHHHHHHcCC
Confidence 6999999997 5889999999999999999999999999999999999999999999999999999999864
No 8
>COG5531 SWIB-domain-containing proteins implicated in chromatin remodeling [Chromatin structure and dynamics]
Probab=99.73 E-value=2.3e-18 Score=158.64 Aligned_cols=71 Identities=18% Similarity=0.275 Sum_probs=69.1
Q ss_pred CCHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHhcCCCCCcCCcccccchhhhhhhCCCccchHHHHHHHHhcccc
Q 022354 42 GSIPLIEFLQSLGKDTTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKSFLRIKIYDLLEAHYAE 118 (298)
Q Consensus 42 ~S~eL~efl~~~g~~~~~~lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDekL~~LFgk~~v~~f~m~klL~~H~~~ 118 (298)
.|+.||.||| ..++||++||+.||+|||+||||||.+||.|+||++|+.|||.+.+.||+|+++|.+|+.+
T Consensus 127 lS~~La~ilG------~~~~tr~~~v~~lw~YIk~h~lq~~~nkr~I~~D~~L~~v~g~~p~~mf~~~k~l~~hl~~ 197 (237)
T COG5531 127 LSPKLAAILG------LEPGTRPEAVKKLWKYIKKHNLQDPNNKRLILCDSKLKKVLGSDPIDMFELTKPLSPHLIK 197 (237)
T ss_pred cCHHHHHHhC------CCCCCccHHHHHHHHHHHHhcCCCccccceecccHHHHHHhCCCchhhhhhhcccccceec
Confidence 7999999998 6899999999999999999999999999999999999999999999999999999999997
No 9
>PRK14724 DNA topoisomerase III; Provisional
Probab=99.72 E-value=5.4e-18 Score=181.76 Aligned_cols=71 Identities=20% Similarity=0.377 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHhcCCCCCcCCcccccchhhhhhhCCCccchHHHHHHHHhccc
Q 022354 41 WGSIPLIEFLQSLGKDTTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKSFLRIKIYDLLEAHYA 117 (298)
Q Consensus 41 w~S~eL~efl~~~g~~~~~~lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDekL~~LFgk~~v~~f~m~klL~~H~~ 117 (298)
-.|++|++||| ..++||++|++.||+|||+||||||.|||.|+||++|+.|||+++|.||+|+++|++|+.
T Consensus 917 ~ls~~La~~lg------~~~~~r~~v~~~lW~YIK~~~Lqdp~~k~~i~cD~~L~~vfg~~~~~~~~~~~~l~~hl~ 987 (987)
T PRK14724 917 KPSAALAAVIG------AEPVARPEVIKKLWDYIKANNLQDPADKRAINADAKLRPVFGKDQVTMFELAGIVGKHLS 987 (987)
T ss_pred CCCHHHHHHhC------CCcCCHHHHHHHHHHHHHHccCCCcccCCeeccchHHHHHhCCCcccHHHHHHHHHHhcC
Confidence 37999999997 678999999999999999999999999999999999999999999999999999999984
No 10
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=99.28 E-value=2.2e-12 Score=137.23 Aligned_cols=71 Identities=20% Similarity=0.332 Sum_probs=67.5
Q ss_pred CCHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHhcCCCCCcCCcccccchhhhhhhCCCccchHHHHHHHHhcccc
Q 022354 42 GSIPLIEFLQSLGKDTTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKSFLRIKIYDLLEAHYAE 118 (298)
Q Consensus 42 ~S~eL~efl~~~g~~~~~~lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDekL~~LFgk~~v~~f~m~klL~~H~~~ 118 (298)
.|++|+.+++ +.+++|.++++.||+|||+|+||||.+|+.|+||++|+.+||++++.+|+|+++|+.|+.+
T Consensus 790 ~S~~La~~~g------~~~~sr~~~~~~lw~yIk~~~lqdp~~Kr~i~~d~kl~kvf~~~~~~~~~~~k~l~~hl~~ 860 (860)
T PRK06319 790 PSPALAAMIG------AEPVGRGEATKKVWDYIKEHGLQSPENKKLIIPDSKLQGVIGPDPIDMFQLSKKLSQHLIK 860 (860)
T ss_pred cccccccccC------cCccCchHHHHHHHHHHHHhcccCccccccCCCchhhhhhhCcCccchhhhHHHHHhhhcC
Confidence 6999999986 6789999999999999999999999999999999999999999999999999999999863
No 11
>KOG2570 consensus SWI/SNF transcription activation complex subunit [Chromatin structure and dynamics; Transcription]
Probab=99.19 E-value=6.6e-12 Score=123.26 Aligned_cols=146 Identities=18% Similarity=0.158 Sum_probs=104.4
Q ss_pred CCHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHhcCCCCCcCCcccccchhhhhhhCCCccchHHHHHHHHhccccCCC
Q 022354 42 GSIPLIEFLQSLGKDTTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKSFLRIKIYDLLEAHYAENQF 121 (298)
Q Consensus 42 ~S~eL~efl~~~g~~~~~~lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDekL~~LFgk~~v~~f~m~klL~~H~~~~~~ 121 (298)
.||.|+..|| ...-||++|+..||.|||.|+||||.++..|.||.-|+.+||++++.+.+++.+|.+|+.+.++
T Consensus 211 lsp~La~lLG------i~t~Trp~iI~alWqYIk~n~Lqd~~e~~~incD~~l~qif~~~rl~F~elp~~l~~lL~P~dP 284 (420)
T KOG2570|consen 211 LSPRLANLLG------IHTGTRPDIVTALWQYIKTNKLQDPEDSDFINCDKALEQIFGVDRLKFPELPQLLNPLLSPPDP 284 (420)
T ss_pred cCHHHHHHhh------hccCcchHHHHHHHHHHHHhccCCcccchhhcchHHHHHhhcccccccccchhhhhhccCCCCC
Confidence 7999999998 5667999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCCCCc-------cCc--ccccc-ccChhhhhccccccccccccCCcccccc------ccccccceeeeeHHHHHHHhc
Q 022354 122 ESDDDFL-------FSS--DEENN-LFSSEKQKSRKVPLKKLCLETPKSCWAA------IVPDNIKLVYLKRSLVQDLLK 185 (298)
Q Consensus 122 ~~~d~~~-------~~s--edd~~-~~~~~k~~~r~~~~k~~~~~~~~~~~aa------i~~~ninlIyL~Rslve~ll~ 185 (298)
.-=+-.+ ..+ -|.++ .-.+.+..-+.. ..+.....+-+| -+.++||...-||.++.+|..
T Consensus 285 Ivi~h~I~v~~~~~~~tacyDIdV~v~~p~~~q~~nf----l~~~~~~~eI~alD~kI~~li~~ine~~~rr~Ff~~Fs~ 360 (420)
T KOG2570|consen 285 IVIDHTISVDGNDTKVTACYDIDVEVEDPRKSQMSNF----LASTESQKEIAALDRKITELIQQINESKERRDFFLEFSK 360 (420)
T ss_pred eeecceeccCCCcccceeEEeeeeccCCccchhhhhh----hcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5211011 011 01111 011221111000 001111112222 245788999999999999999
Q ss_pred Cccccccccccc
Q 022354 186 DSETFECKVVGS 197 (298)
Q Consensus 186 ~p~~F~~kVvG~ 197 (298)
+|-.|...++-|
T Consensus 361 dPvefin~wi~S 372 (420)
T KOG2570|consen 361 DPVEFINEWIES 372 (420)
T ss_pred CHHHHHHHHHHh
Confidence 998898877643
No 12
>KOG2522 consensus Filamentous baseplate protein Ligatin, contains PUA domain [Translation, ribosomal structure and biogenesis]
Probab=83.47 E-value=1.4 Score=45.18 Aligned_cols=54 Identities=17% Similarity=0.343 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCCCCCccCHHHHHHHHHHHHHhcCCCCCcCCcccccchhhhhhh
Q 022354 45 PLIEFLQSLGKDTTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLF 98 (298)
Q Consensus 45 eL~efl~~~g~~~~~~lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDekL~~LF 98 (298)
-..+++.+.|.+-.+-++-.||...+-.||+.|||-|+.||..++.|+-|-...
T Consensus 366 ~~~~Lf~evg~~kg~lyt~seir~~V~kYi~knnLad~~nKg~VrLDpILfd~~ 419 (560)
T KOG2522|consen 366 LAKDLFKEVGLAKGTLYTSSEIRSAVSKYISKNNLADTKNKGKVRLDPILFDMV 419 (560)
T ss_pred HHHHHHHhcCccccceeeHHHHHHHHHHHhhhhhccccccCCcEEeccHHHHHH
Confidence 345666777777788899999999999999999999999999999999887643
No 13
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=65.62 E-value=12 Score=25.09 Aligned_cols=37 Identities=24% Similarity=0.452 Sum_probs=30.3
Q ss_pred ccCCCCHHHHHHHHhcCCCCCCcc-CHHHHHHHHHHHH
Q 022354 38 FDGWGSIPLIEFLQSLGKDTTQQI-SRYDVTDIINKYV 74 (298)
Q Consensus 38 ~~~w~S~eL~efl~~~g~~~~~~l-sr~~Vvk~lW~YI 74 (298)
|..|-..+|.+||.+-|--..+.. +|.++++.+-+|+
T Consensus 1 fdtWs~~~L~~wL~~~gi~~~~~~~~rd~Ll~~~k~~y 38 (38)
T PF10281_consen 1 FDTWSDSDLKSWLKSHGIPVPKSAKTRDELLKLAKKNY 38 (38)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhC
Confidence 567999999999988776666665 9999999887764
No 14
>PRK05350 acyl carrier protein; Provisional
Probab=64.25 E-value=8.3 Score=29.62 Aligned_cols=57 Identities=9% Similarity=0.113 Sum_probs=48.2
Q ss_pred cCHHHHHHHHHHHHHhcCCCCCcCCcccccchhhhhhhCCCccchHHHHHHHHhccccCC
Q 022354 61 ISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKSFLRIKIYDLLEAHYAENQ 120 (298)
Q Consensus 61 lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDekL~~LFgk~~v~~f~m~klL~~H~~~~~ 120 (298)
|+|.++...|.++|.+. +.-|. -.|..|..|..-+|-+++.+.++.-.|+.||--..
T Consensus 2 m~~~~i~~~v~~ii~~~-~~~~~--~~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~i 58 (82)
T PRK05350 2 MTREEILERLRAILVEL-FEIDP--EDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKKI 58 (82)
T ss_pred CCHHHHHHHHHHHHHHH-hCCCH--HHCCCCccchhhcCCCHHHHHHHHHHHHHHHCCcc
Confidence 68999999999999987 53233 35999999988789999999999999999997654
No 15
>PRK05828 acyl carrier protein; Validated
Probab=51.77 E-value=28 Score=27.49 Aligned_cols=57 Identities=9% Similarity=0.100 Sum_probs=46.5
Q ss_pred cCHHHHHHHHHHHHHhcCCCCCcCCcccccchhhhhhhCCCccchHHHHHHHHhccccCC
Q 022354 61 ISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKSFLRIKIYDLLEAHYAENQ 120 (298)
Q Consensus 61 lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDekL~~LFgk~~v~~f~m~klL~~H~~~~~ 120 (298)
|+|.++...|-+-|.+.++.=+.+ .|.+|..|.. +|-+++.+.++--.|+.+|--.-
T Consensus 1 m~~~eI~~~i~~ii~e~~~~~~~d--~i~~~~~~~d-Lg~DSLd~velv~~lE~~f~I~i 57 (84)
T PRK05828 1 MQEMEILLKIKEIAKKKNFAVTLD--ESNINKPYRE-LKIDSLDMFSIIVSLESEFNIEF 57 (84)
T ss_pred CCHHHHHHHHHHHHHHhccCCCcc--cccCCCCHHh-cCCCHHHHHHHHHHHHHHHCCCc
Confidence 689999999999998865543332 3677888877 79999999999999999997654
No 16
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=48.16 E-value=20 Score=28.88 Aligned_cols=40 Identities=13% Similarity=0.054 Sum_probs=36.9
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhhhh
Q 022354 252 SDDNFSEEECEDLRQRVKDGLLKRPTVVSSLLLFMRNYSL 291 (298)
Q Consensus 252 Sn~dFTeeEc~rl~q~~~~g~~~rpTv~di~~~~~~~~~~ 291 (298)
-+.+|-+.|..|+..-+..+.+..-..+|+..+.+-+.+|
T Consensus 54 kg~~yv~~E~~RL~~iL~~~~ls~~K~del~~R~NIL~~F 93 (93)
T cd00238 54 KGEDYVEKELARLERLLEKKGLAPEKADELTRRLNILRSF 93 (93)
T ss_pred cchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Confidence 3889999999999999999889999999999999998876
No 17
>CHL00124 acpP acyl carrier protein; Validated
Probab=42.53 E-value=31 Score=26.09 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=47.8
Q ss_pred cCHHHHHHHHHHHHHhcCCCCCcCCcccccchhhhhhhCCCccchHHHHHHHHhccccCCC
Q 022354 61 ISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKSFLRIKIYDLLEAHYAENQF 121 (298)
Q Consensus 61 lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDekL~~LFgk~~v~~f~m~klL~~H~~~~~~ 121 (298)
|+|.+|...|-++|.+.==.+|. .|..|..|..-+|-+++.+.++.-.|+.+|--.-+
T Consensus 1 M~~~~i~~~l~~ii~~~~~~~~~---~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~i~ 58 (82)
T CHL00124 1 MTKNDIFEKVQSIVAEQLGIEKS---EVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIP 58 (82)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHH---HCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCccC
Confidence 57889999999999887433443 49999999998899999999999999999876543
No 18
>PRK12449 acyl carrier protein; Provisional
Probab=42.13 E-value=48 Score=24.93 Aligned_cols=57 Identities=9% Similarity=0.135 Sum_probs=46.2
Q ss_pred cCHHHHHHHHHHHHHhcCCCCCcCCcccccchhhhhhhCCCccchHHHHHHHHhccccCC
Q 022354 61 ISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKSFLRIKIYDLLEAHYAENQ 120 (298)
Q Consensus 61 lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDekL~~LFgk~~v~~f~m~klL~~H~~~~~ 120 (298)
|+|.++...|-+++.+.-=.+|. .|..|..|..-+|-+++.+.++.-.|+..|--..
T Consensus 1 m~~~~i~~~l~~il~~~~~~~~~---~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~i 57 (80)
T PRK12449 1 MTREEIFERLINLIQKQRSYLSL---AITEQTHLKDDLAVDSIELVEFIINVEDEFHIAI 57 (80)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcc---ccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCCC
Confidence 46888888888888874433333 4999999999999999999999999998887554
No 19
>PF06627 DUF1153: Protein of unknown function (DUF1153); InterPro: IPR009534 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2OA4_A 2JRT_A.
Probab=35.49 E-value=21 Score=29.14 Aligned_cols=24 Identities=25% Similarity=0.145 Sum_probs=17.9
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCcc
Q 022354 254 DNFSEEECEDLRQRVKDGLLKRPT 277 (298)
Q Consensus 254 ~dFTeeEc~rl~q~~~~g~~~rpT 277 (298)
=++|+|||+.|.+.+..++..-+-
T Consensus 59 Y~Ls~eEf~~W~~av~rhge~aLr 82 (90)
T PF06627_consen 59 YGLSEEEFESWQRAVDRHGENALR 82 (90)
T ss_dssp TTSSHHHHHHHHHHCCT--TTSS-
T ss_pred hCCCHHHHHHHHHHHHHHhHHHHH
Confidence 368999999999999998876543
No 20
>PHA02696 hypothetical protein; Provisional
Probab=35.02 E-value=24 Score=27.73 Aligned_cols=22 Identities=50% Similarity=0.601 Sum_probs=17.3
Q ss_pred EeecccCCCCCHHHHHHHHHHH
Q 022354 247 RIATLSDDNFSEEECEDLRQRV 268 (298)
Q Consensus 247 ~I~~iSn~dFTeeEc~rl~q~~ 268 (298)
-|..-.|.-||||||++=.|.+
T Consensus 40 ViQtCdDDYFTEeEFdDgkQvV 61 (79)
T PHA02696 40 VIQTCDDDYFTEEEFDDGKQVV 61 (79)
T ss_pred eeeecccccccHhhcccHHHHH
Confidence 3455568999999999888765
No 21
>PTZ00171 acyl carrier protein; Provisional
Probab=29.03 E-value=72 Score=27.92 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=50.9
Q ss_pred CCccCHHHHHHHHHHHHHhcCCCCCcCCcccccchhhhhhhCCCccchHHHHHHHHhccccCCC
Q 022354 58 TQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKSFLRIKIYDLLEAHYAENQF 121 (298)
Q Consensus 58 ~~~lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDekL~~LFgk~~v~~f~m~klL~~H~~~~~~ 121 (298)
..-|++.+|...|.++|.+.--.+|. .|..|..+..-+|-+++.+.++--.|+.+|--..+
T Consensus 63 ~~~~~~~~v~~~l~eiiae~l~vd~~---~I~~ds~~~~dLg~DSLd~veLv~~LEdeFgI~Ip 123 (148)
T PTZ00171 63 QYLLSKEDVLTRVKKVVKNFEKVDAS---KITPESNFVKDLGADSLDVVELLIAIEQEFNLTIP 123 (148)
T ss_pred ccccCHHHHHHHHHHHHHHHhCCCHh---hCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCccC
Confidence 45688999999999999988533443 48899999999999999999999999999876543
No 22
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=28.09 E-value=1.4e+02 Score=19.70 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHhcCCCCCCccCHHHHHHHHHHHH
Q 022354 41 WGSIPLIEFLQSLGKDTTQQISRYDVTDIINKYV 74 (298)
Q Consensus 41 w~S~eL~efl~~~g~~~~~~lsr~~Vvk~lW~YI 74 (298)
|--++|.+++...|-.++ -++.+++.+|-+||
T Consensus 4 l~v~eLk~~l~~~gL~~~--G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 4 LTVAELKEELKERGLSTS--GKKAELIERLKEHL 35 (35)
T ss_dssp SHHHHHHHHHHHTTS-ST--SSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHCCCCCC--CCHHHHHHHHHHhC
Confidence 445789999998887555 45999999998886
No 23
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=27.78 E-value=32 Score=27.60 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhhhh
Q 022354 254 DNFSEEECEDLRQRVKDGLLKRPTVVSSLLLFMRNYSL 291 (298)
Q Consensus 254 ~dFTeeEc~rl~q~~~~g~~~rpTv~di~~~~~~~~~~ 291 (298)
.+|-+.|..|+...+. |.+..-..+|+..+.|-|.+|
T Consensus 58 ~~fv~~E~~RL~~lL~-~~l~~~K~del~~R~NIL~~F 94 (95)
T PF07749_consen 58 EEFVAKEIARLERLLE-GKLSPEKKDELQKRLNILSSF 94 (95)
T ss_dssp THHHHHHHHHHHHHHH-SSS-HHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHc
Confidence 7899999999999999 999999999999999999887
No 24
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=23.32 E-value=1.2e+02 Score=24.49 Aligned_cols=36 Identities=8% Similarity=0.070 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHcCC-CCCccHHHHHHHHHHhh
Q 022354 254 DNFSEEECEDLRQRVKDGL-LKRPTVVSSLLLFMRNY 289 (298)
Q Consensus 254 ~dFTeeEc~rl~q~~~~g~-~~rpTv~di~~~~~~~~ 289 (298)
+|+||+||-.+...+-+.. -..--.+++...|.++.
T Consensus 8 ~dyTE~EFl~~v~~i~~~~~~~ee~~d~lv~hF~~it 44 (85)
T PF01320_consen 8 SDYTESEFLEFVKEIFNAELKTEEEHDELVDHFEKIT 44 (85)
T ss_dssp GGSBHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 5799999999999999986 33444566666666554
No 25
>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]
Probab=20.97 E-value=1.8e+02 Score=28.86 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=41.7
Q ss_pred CCCCccCHHHHHHHHHHHHHhcCCCCC-------------cCCcccccchhhhhhhC-CCccchH-HHHHHHH
Q 022354 56 DTTQQISRYDVTDIINKYVNENKLVHS-------------VKKKRVVSDERLLSLFG-KKSFLRI-KIYDLLE 113 (298)
Q Consensus 56 ~~~~~lsr~~Vvk~lW~YIK~nnLqDP-------------~~Kr~IiCDekL~~LFg-k~~v~~f-~m~klL~ 113 (298)
+|..++++.||++-+.++|......-+ .+.|.-+|+||++.| | +..+..- .|.+.++
T Consensus 249 gtd~e~~~~~l~k~i~eli~~~~~~~~~~p~~~~v~dRp~nd~Ry~~~~eKik~L-Gw~~~~p~~eGLrktie 320 (331)
T KOG0747|consen 249 GTDDEMRVIDLAKDICELFEKRLPNIDTEPFIFFVEDRPYNDLRYFLDDEKIKKL-GWRPTTPWEEGLRKTIE 320 (331)
T ss_pred cCcchhhHHHHHHHHHHHHHHhccCCCCCCcceecCCCCcccccccccHHHHHhc-CCcccCcHHHHHHHHHH
Confidence 678899999999999999998544221 246789999999955 7 5555532 4555554
Done!