Query 022354
Match_columns 298
No_of_seqs 181 out of 440
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 04:07:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bze_A KIAA0252 protein; human 100.0 1E-35 3.5E-40 256.2 12.0 130 160-293 19-153 (153)
2 3u1u_A RNA polymerase-associat 100.0 1.5E-35 5E-40 250.6 9.3 127 160-290 5-136 (137)
3 1v32_A AT5G08430, hypothetical 100.0 2.3E-34 7.8E-39 233.3 9.3 93 32-124 6-98 (101)
4 1v31_A Hypothetical protein RA 99.9 9.8E-26 3.4E-30 179.7 5.4 75 42-122 14-88 (93)
5 1uhr_A SWI/SNF related, matrix 99.9 1.4E-25 4.9E-30 178.8 5.4 75 42-122 14-88 (93)
6 3dac_M MDM4 protein; MDMX, MDM 96.4 0.0053 1.8E-07 51.4 6.0 77 42-119 27-107 (130)
7 1z1m_A Ubiquitin-protein ligas 96.2 0.013 4.5E-07 48.4 7.1 76 42-118 30-106 (119)
8 3fea_A MDM4 protein; HDMX, HDM 95.7 0.014 4.8E-07 47.0 5.3 75 43-118 19-97 (100)
9 1ycq_A MDM2, MDM2; anti-oncoge 95.6 0.024 8.3E-07 46.1 6.4 72 43-115 15-87 (107)
10 2axi_A Ubiquitin-protein ligas 94.9 0.024 8.2E-07 46.6 4.2 73 43-116 15-88 (115)
11 2z5s_M MDM4 protein, zebrafish 94.8 0.039 1.3E-06 46.6 5.4 75 43-118 27-105 (140)
12 2do5_A Splicing factor 3B subu 68.9 11 0.00037 27.0 5.4 44 34-80 4-48 (58)
13 2kwl_A ACP, acyl carrier prote 39.0 39 0.0013 24.1 4.3 59 59-120 3-61 (84)
14 1f80_D Acyl carrier protein; t 36.4 29 0.001 24.4 3.3 57 60-119 2-58 (81)
15 1gxg_A Colicin E8 immunity pro 30.4 60 0.002 25.0 4.3 36 254-289 8-43 (85)
16 2cnr_A FAS, ACP, acyl carrier 27.5 82 0.0028 21.9 4.4 56 61-119 3-58 (82)
17 2dnw_A Acyl carrier protein; A 27.4 73 0.0025 23.7 4.3 60 57-119 7-66 (99)
18 2lol_A ACP, acyl carrier prote 25.5 90 0.0031 21.7 4.3 56 61-119 2-57 (81)
19 1dv5_A APO-DCP, APO-D-alanyl c 22.3 54 0.0019 23.5 2.6 56 62-120 1-56 (80)
20 3kdg_A DNA mismatch repair pro 21.8 64 0.0022 27.5 3.3 39 249-287 146-195 (197)
21 3u43_A Colicin-E2 immunity pro 21.4 63 0.0022 25.4 2.9 33 254-288 8-40 (94)
22 1x3o_A Acyl carrier protein; s 20.8 77 0.0026 21.9 3.1 56 61-119 1-56 (80)
No 1
>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} SCOP: b.34.21.1
Probab=100.00 E-value=1e-35 Score=256.18 Aligned_cols=130 Identities=17% Similarity=0.210 Sum_probs=118.5
Q ss_pred cccccccccccceeeeeHHHHHHHhcCcccccccccccEEEEecCCCCCcCccceeEEEEEeeeecCCC---CCcccceE
Q 022354 160 SCWAAIVPDNIKLVYLKRSLVQDLLKDSETFECKVVGSFVRVKSDPNDYLQKNSHQLLQVIGTKKVPGT---DDKSTEIL 236 (298)
Q Consensus 160 ~~~aai~~~ninlIyL~Rslve~ll~~p~~F~~kVvG~FVRIki~~~~~~~k~~YRlvqV~gv~~~~e~---g~~~Tni~ 236 (298)
..+++ +.+||++|||+|++|++||+.| .|+++|+||||||+||++++ +++||||||+||.++++. |++.||++
T Consensus 19 ~~~v~-~l~di~~irL~Rs~l~~~~~~P-~Fe~~V~GcFVRV~ig~~~~--~~~YRl~qI~gv~~~~k~Y~l~~~~T~~~ 94 (153)
T 2bze_A 19 SHMVS-LPEELNRVRLSRHKLERWCHMP-FFAKTVTGCFVRIGIGNHNS--KPVYRVAEITGVVETAKVYQLGGTRTNKG 94 (153)
T ss_dssp CSBCC-CHHHHHHSEECHHHHHHHSSSS-SCHHHHTTCEEEEESSTTSS--SCCEEEEEEEEEEEEEEEEEETTEEEEEE
T ss_pred CCCcC-CHHHhhheEEEHHHHHHHhcCC-chhHheEEEEEEEEeCCCCC--CccEEEEEEEeEEecCcccccCCcccceE
Confidence 33444 7889999999999999999999 89999999999999998654 589999999999998774 89999999
Q ss_pred EEeeCC--ceeeEeecccCCCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhhhhcc
Q 022354 237 LKVSNF--VKDIRIATLSDDNFSEEECEDLRQRVKDGLLKRPTVVSSLLLFMRNYSLFC 293 (298)
Q Consensus 237 L~v~~~--~k~~~I~~iSn~dFTeeEc~rl~q~~~~g~~~rpTv~di~~~~~~~~~~~~ 293 (298)
|.|++. .++|+|++|||++|||+||++|++.|+++++++||+.+|++|..+++.+++
T Consensus 95 L~l~~g~~~r~~~m~~vSN~~fte~Ef~~w~~~~~~~~~~~PT~~~v~~K~~~i~~a~n 153 (153)
T 2bze_A 95 LQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALN 153 (153)
T ss_dssp EEEESSSCEEEECGGGBCCSCCCHHHHHHHHHHHHHHTCCCCBHHHHHHHHHHHHHHC-
T ss_pred EEEEECCcceEEEeeEeeCCCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhC
Confidence 999973 468999999999999999999999999999999999999999999998764
No 2
>3u1u_A RNA polymerase-associated protein RTF1 homolog; plus-3, transcription elongation, structural genomics, struc genomics consortium, SGC; 1.80A {Homo sapiens} PDB: 2db9_A
Probab=100.00 E-value=1.5e-35 Score=250.65 Aligned_cols=127 Identities=17% Similarity=0.209 Sum_probs=114.3
Q ss_pred cccccccccccceeeeeHHHHHHHhcCcccccccccccEEEEecCCCCCcCccceeEEEEEeeeecCCC---CCcccceE
Q 022354 160 SCWAAIVPDNIKLVYLKRSLVQDLLKDSETFECKVVGSFVRVKSDPNDYLQKNSHQLLQVIGTKKVPGT---DDKSTEIL 236 (298)
Q Consensus 160 ~~~aai~~~ninlIyL~Rslve~ll~~p~~F~~kVvG~FVRIki~~~~~~~k~~YRlvqV~gv~~~~e~---g~~~Tni~ 236 (298)
..+.+ +.+||++|||+|++|++||++| +|+++|+||||||+||+++ ++++|||+||+||.++++. |++.||++
T Consensus 5 ~~~v~-~l~dl~~i~L~R~~l~~~~~~P-~Fe~~V~GcFVRv~ig~~~--~~~~Yrl~qI~gv~~~~k~Y~l~~~~T~~~ 80 (137)
T 3u1u_A 5 SQPVS-LPEELNRVRLSRHKLERWCHMP-FFAKTVTGCFVRIGIGNHN--SKPVYRVAEITGVVETAKVYQLGGTRTNKG 80 (137)
T ss_dssp TSBCC-SHHHHHTTBCCHHHHHHHTTST-THHHHHTTCEEEEEEEC------CEEEEEEEEEEEEEEEEEEETTEEEEEE
T ss_pred cCCCC-CHHHhcceEEEHHHHHHHhcCC-ChhHheEEEEEEEEeCCCC--CCccEEEEEEEEEEecCcccccCCceeeEE
Confidence 45566 8899999999999999999999 9999999999999999987 3589999999999987764 88999999
Q ss_pred EEeeCC--ceeeEeecccCCCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhhh
Q 022354 237 LKVSNF--VKDIRIATLSDDNFSEEECEDLRQRVKDGLLKRPTVVSSLLLFMRNYS 290 (298)
Q Consensus 237 L~v~~~--~k~~~I~~iSn~dFTeeEc~rl~q~~~~g~~~rpTv~di~~~~~~~~~ 290 (298)
|.|++. .++|+|++|||++|||+||++|++.|+++++++||+.+|++|+..+..
T Consensus 81 L~l~~g~~~r~~~~~~vSN~~fte~E~~~w~~~~~~~~~~~Pt~~~l~~K~~~i~~ 136 (137)
T 3u1u_A 81 LQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKE 136 (137)
T ss_dssp EEEEETTEEEEEEGGGBCSSCCCHHHHHHHHHHHHHHTCCCCBHHHHHHHHHHTCC
T ss_pred EEEEeCCcceEEEeeeecCCCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhh
Confidence 999973 468999999999999999999999999999999999999999998753
No 3
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=100.00 E-value=2.3e-34 Score=233.32 Aligned_cols=93 Identities=54% Similarity=0.922 Sum_probs=88.6
Q ss_pred CCCcccccCCCCHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHhcCCCCCcCCcccccchhhhhhhCCCccchHHHHHH
Q 022354 32 RSKKVKFDGWGSIPLIEFLQSLGKDTTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKSFLRIKIYDL 111 (298)
Q Consensus 32 ~~k~~~~~~w~S~eL~efl~~~g~~~~~~lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDekL~~LFgk~~v~~f~m~kl 111 (298)
.+|+.+|+||+|++|++||++||.+|++++||++|++.||+|||+||||||.+||.|+||++|++|||+++|.||+|+++
T Consensus 6 ~~~~~~~~~w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~~~m~kl 85 (101)
T 1v32_A 6 SGKRFEFVGWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDL 85 (101)
T ss_dssp CSSCCSSSSSSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHHHHH
T ss_pred CCCcceecccCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHCCCcccHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccCCCCCC
Q 022354 112 LEAHYAENQFESD 124 (298)
Q Consensus 112 L~~H~~~~~~~~~ 124 (298)
|++||.++++.+.
T Consensus 86 L~~Hl~~~~e~~~ 98 (101)
T 1v32_A 86 LEKHYKENQDSGP 98 (101)
T ss_dssp HHHHSCSCCCCCS
T ss_pred HHHHcCcccccCC
Confidence 9999999876543
No 4
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.92 E-value=9.8e-26 Score=179.66 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=71.9
Q ss_pred CCHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHhcCCCCCcCCcccccchhhhhhhCCCccchHHHHHHHHhccccCCC
Q 022354 42 GSIPLIEFLQSLGKDTTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKSFLRIKIYDLLEAHYAENQF 121 (298)
Q Consensus 42 ~S~eL~efl~~~g~~~~~~lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDekL~~LFgk~~v~~f~m~klL~~H~~~~~~ 121 (298)
.|++|++||| ..++||++|++.||+|||+||||||.+|+.|+||++|+.|||+++|.||+|+++|++|+.+.++
T Consensus 14 lS~~La~~lG------~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg~~~v~~~~~~klL~~Hl~p~~P 87 (93)
T 1v31_A 14 LSTALMDVLG------IEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSPPPP 87 (93)
T ss_dssp CCHHHHHHSC------CSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEETTTTHHHHHHHCBCCCC
T ss_pred cCHHHHHHHC------CCccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhCCCcccHHHHHHHHHHhcCCCCC
Confidence 8999999997 6789999999999999999999999999999999999999999999999999999999998876
Q ss_pred C
Q 022354 122 E 122 (298)
Q Consensus 122 ~ 122 (298)
.
T Consensus 88 i 88 (93)
T 1v31_A 88 S 88 (93)
T ss_dssp S
T ss_pred e
Confidence 4
No 5
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=99.91 E-value=1.4e-25 Score=178.80 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=71.9
Q ss_pred CCHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHhcCCCCCcCCcccccchhhhhhhCCCccchHHHHHHHHhccccCCC
Q 022354 42 GSIPLIEFLQSLGKDTTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKSFLRIKIYDLLEAHYAENQF 121 (298)
Q Consensus 42 ~S~eL~efl~~~g~~~~~~lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDekL~~LFgk~~v~~f~m~klL~~H~~~~~~ 121 (298)
.|++|++||| ..++||++|++.||+|||+||||||.+|+.|+||++|+.|||+++|.||+|+++|++|+.+.++
T Consensus 14 lS~~La~~lG------~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~klL~~Hl~p~~P 87 (93)
T 1uhr_A 14 LDPRLARLLG------IHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMPPEP 87 (93)
T ss_dssp ECTTHHHHTC------CSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEECSSC
T ss_pred cCHHHHHHHC------CCccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccHHHHHHHHHHhcCCCCC
Confidence 6999999997 6799999999999999999999999999999999999999999999999999999999998876
Q ss_pred C
Q 022354 122 E 122 (298)
Q Consensus 122 ~ 122 (298)
.
T Consensus 88 I 88 (93)
T 1uhr_A 88 S 88 (93)
T ss_dssp C
T ss_pred e
Confidence 4
No 6
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=96.38 E-value=0.0053 Score=51.41 Aligned_cols=77 Identities=18% Similarity=0.316 Sum_probs=67.5
Q ss_pred CCHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHhcCCCCCcCCcccccc-hhhhhhhCCCccchHH---HHHHHHhccc
Q 022354 42 GSIPLIEFLQSLGKDTTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSD-ERLLSLFGKKSFLRIK---IYDLLEAHYA 117 (298)
Q Consensus 42 ~S~eL~efl~~~g~~~~~~lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCD-ekL~~LFgk~~v~~f~---m~klL~~H~~ 117 (298)
.-++|..+|.+.|.. ...++..+|.-.+=.||-.+.|.||.+...|.|- +.|-.+||++++.+-+ +..+|.+++.
T Consensus 27 pk~~lL~iLq~aGA~-~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llGv~sFSVkdp~~L~~mL~~NLv 105 (130)
T 3dac_M 27 PRAPLLQILKVAGAQ-EEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPLYEMLKRNLV 105 (130)
T ss_dssp ECHHHHHHHHHTTCC-CSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTSCHHHHHHHHHHEE
T ss_pred CcHHHHHHHHHhccC-cceeehHHHHHHHHHhhhhhhccCccccceeEeCCcccccccCCcceeecCcHHHHHHHHhhee
Confidence 357899999988864 5578999999999999999999999999999995 5567899999999987 9999999988
Q ss_pred cC
Q 022354 118 EN 119 (298)
Q Consensus 118 ~~ 119 (298)
.-
T Consensus 106 ~~ 107 (130)
T 3dac_M 106 IL 107 (130)
T ss_dssp EC
T ss_pred cc
Confidence 63
No 7
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=96.17 E-value=0.013 Score=48.41 Aligned_cols=76 Identities=20% Similarity=0.279 Sum_probs=64.4
Q ss_pred CCHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHhcCCCCCcCCcccccch-hhhhhhCCCccchHHHHHHHHhcccc
Q 022354 42 GSIPLIEFLQSLGKDTTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDE-RLLSLFGKKSFLRIKIYDLLEAHYAE 118 (298)
Q Consensus 42 ~S~eL~efl~~~g~~~~~~lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDe-kL~~LFgk~~v~~f~m~klL~~H~~~ 118 (298)
..++|..+|...|... ...+..+|.-.+-.||=.+.|.||.+...|.|.. .|-.|||..++.+-+-..+...|...
T Consensus 30 Pk~~LLkiLq~aGA~~-~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~n 106 (119)
T 1z1m_A 30 PKPLLLKLLKSVGAQK-DTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRN 106 (119)
T ss_dssp CSTTSHHHHHHHTCCC-SCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSCCSCEETTCHHHHHHHHSCS
T ss_pred ccHHHHHHHHHhcccc-ceeechheeehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 3468999999888754 6789999999999999999999999999999964 55799999999988777777666553
No 8
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=95.72 E-value=0.014 Score=46.97 Aligned_cols=75 Identities=21% Similarity=0.419 Sum_probs=64.9
Q ss_pred CHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHhcCCCCCcCCcccccch-hhhhhhCCCccchH---HHHHHHHhcccc
Q 022354 43 SIPLIEFLQSLGKDTTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDE-RLLSLFGKKSFLRI---KIYDLLEAHYAE 118 (298)
Q Consensus 43 S~eL~efl~~~g~~~~~~lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDe-kL~~LFgk~~v~~f---~m~klL~~H~~~ 118 (298)
-++|..+|.+.|.. ...++..+|.-.+=.||-.+.|.||.+...|.|.. .|-.+||++++.+- .+..+|..|+..
T Consensus 19 k~~lL~iLq~aGA~-~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G~~sFsvkdp~~l~~ml~~nLv~ 97 (100)
T 3fea_A 19 KLPLLKILHAAGAQ-GEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNLVT 97 (100)
T ss_dssp CHHHHHHHHHTTCC-SSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHTCSEEETTCCHHHHHHHHHHEEC
T ss_pred cHHHHHHHHHhccC-cceeehHHHHHHHHHhhhhhhccCccccceEEeCCCccccccCCcceeecCchHHHHHHHhhcee
Confidence 46899999988864 55789999999999999999999999999999964 56689999999887 788889888763
No 9
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=95.62 E-value=0.024 Score=46.09 Aligned_cols=72 Identities=19% Similarity=0.264 Sum_probs=61.0
Q ss_pred CHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHhcCCCCCcCCcccccch-hhhhhhCCCccchHHHHHHHHhc
Q 022354 43 SIPLIEFLQSLGKDTTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDE-RLLSLFGKKSFLRIKIYDLLEAH 115 (298)
Q Consensus 43 S~eL~efl~~~g~~~~~~lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDe-kL~~LFgk~~v~~f~m~klL~~H 115 (298)
.++|..+|...|... ...+..+|+-.+-.||=.+.|.||.+...|.|.. .|-.|||..++.+-+-..+...|
T Consensus 15 k~~LLklL~~~GA~~-~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml 87 (107)
T 1ycq_A 15 TPLLLSLLKSAGAQK-ETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEPRRLYAMI 87 (107)
T ss_dssp CHHHHHHHHHTTCCC-SCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTCSEEETTCHHHHHHHH
T ss_pred cHHHHHHHHHhcccc-ceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHH
Confidence 468999999988754 6789999999999999999999999999999965 55799999999888665444444
No 10
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=94.87 E-value=0.024 Score=46.60 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=61.5
Q ss_pred CHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHhcCCCCCcCCcccccch-hhhhhhCCCccchHHHHHHHHhcc
Q 022354 43 SIPLIEFLQSLGKDTTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDE-RLLSLFGKKSFLRIKIYDLLEAHY 116 (298)
Q Consensus 43 S~eL~efl~~~g~~~~~~lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDe-kL~~LFgk~~v~~f~m~klL~~H~ 116 (298)
.++|..+|...|... ...+..+|+-.+-.||=.+.|.||.+...|.|.. .|-.|||..++.+-+-..+...|.
T Consensus 15 k~~LLklLq~~GA~~-~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~ 88 (115)
T 2axi_A 15 KPLLLKLLKSVGAQK-DTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIY 88 (115)
T ss_dssp CHHHHHHHHHTTCCC-SCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHSSSEEETTCHHHHHHHHH
T ss_pred cHHHHHHHHHhcccc-ceeechhheehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHH
Confidence 468999999988754 6789999999999999999999999999999964 557999999998886555555443
No 11
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=94.79 E-value=0.039 Score=46.58 Aligned_cols=75 Identities=19% Similarity=0.316 Sum_probs=61.6
Q ss_pred CHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHhcCCCCCcCCcccccch-hhhhhhCCCccchHHH---HHHHHhcccc
Q 022354 43 SIPLIEFLQSLGKDTTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDE-RLLSLFGKKSFLRIKI---YDLLEAHYAE 118 (298)
Q Consensus 43 S~eL~efl~~~g~~~~~~lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDe-kL~~LFgk~~v~~f~m---~klL~~H~~~ 118 (298)
-++|..+|..-|. ....++.-+|.-.|-.||=.+.|.||.+...|.|.. .|-.|||..++.+-+- .++|.+-+..
T Consensus 27 k~~LLkiLq~aGA-~~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~Gv~sFSVKdp~~ly~ML~~NLv~ 105 (140)
T 2z5s_M 27 RAPLLQILKVAGA-QEEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPVYEMLKRNLVI 105 (140)
T ss_dssp CHHHHHHHHHTTC-CCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTBCHHHHHHHHHHEEC
T ss_pred cHHHHHHHHHhCc-ccceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHhccc
Confidence 3689999998775 355789999999999999999999999999999964 5579999999988754 4555555443
No 12
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.93 E-value=11 Score=27.01 Aligned_cols=44 Identities=18% Similarity=0.407 Sum_probs=36.1
Q ss_pred CcccccCCCCHHHHHHHHhcCCCCCC-ccCHHHHHHHHHHHHHhcCCC
Q 022354 34 KKVKFDGWGSIPLIEFLQSLGKDTTQ-QISRYDVTDIINKYVNENKLV 80 (298)
Q Consensus 34 k~~~~~~w~S~eL~efl~~~g~~~~~-~lsr~~Vvk~lW~YIK~nnLq 80 (298)
...-|-.|+-+||++=|+.+| .. .-+|.+++.+|-.|.++-+.-
T Consensus 4 g~~~ygaW~~~ELQaKLaE~G---APi~g~REElvdRLk~Y~~QtGi~ 48 (58)
T 2do5_A 4 GSSGYGAWAAQELQAKLAEIG---APIQGNREELVERLQSYTRQTGIV 48 (58)
T ss_dssp CCCCSCSSCHHHHHHHHHHHT---CCCCSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCcccccCHHHHHHHHHhC---CcccccHHHHHHHHHHHhhcccee
Confidence 344577899999999999998 33 347999999999999987754
No 13
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=38.98 E-value=39 Score=24.07 Aligned_cols=59 Identities=12% Similarity=0.222 Sum_probs=47.3
Q ss_pred CccCHHHHHHHHHHHHHhcCCCCCcCCcccccchhhhhhhCCCccchHHHHHHHHhccccCC
Q 022354 59 QQISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKSFLRIKIYDLLEAHYAENQ 120 (298)
Q Consensus 59 ~~lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDekL~~LFgk~~v~~f~m~klL~~H~~~~~ 120 (298)
..|++.++...|.+.|.+.-=.+| ..|-.|..|..-+|-+++.+.++...|+.+|--..
T Consensus 3 ~~m~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i 61 (84)
T 2kwl_A 3 GSMDNDEIFSKVRSIISEQLDKKE---DEITTDSRFVEDLNADSLDIYELLYLLEEAFDDKI 61 (84)
T ss_dssp CCSTHHHHHHHHHHHHHHHHCCCG---GGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHTCCT
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCc---ccCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCc
Confidence 358999999999999987532333 35889999976789999999999999999986443
No 14
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=36.43 E-value=29 Score=24.41 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=43.5
Q ss_pred ccCHHHHHHHHHHHHHhcCCCCCcCCcccccchhhhhhhCCCccchHHHHHHHHhccccC
Q 022354 60 QISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKSFLRIKIYDLLEAHYAEN 119 (298)
Q Consensus 60 ~lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDekL~~LFgk~~v~~f~m~klL~~H~~~~ 119 (298)
+|++.++...|.++|.+.-=.+| ..|-.|..|..-+|-+++...++...|+.+|--.
T Consensus 2 ~m~~~~i~~~l~~~l~~~l~~~~---~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~ 58 (81)
T 1f80_D 2 PLGSADTLERVTKIIVDRLGVDE---ADVKLEASFKEDLGADXLDVVELVMELEDEFDME 58 (81)
T ss_dssp ---CCHHHHHHHHHHHHHSSCCS---SCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHCCCH---HhCCCccchHHHcCCcHHHHHHHHHHHHHHhCCc
Confidence 57888999999999887632333 3588899996667999999999999999998543
No 15
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=30.35 E-value=60 Score=24.95 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhh
Q 022354 254 DNFSEEECEDLRQRVKDGLLKRPTVVSSLLLFMRNY 289 (298)
Q Consensus 254 ~dFTeeEc~rl~q~~~~g~~~rpTv~di~~~~~~~~ 289 (298)
+|+|++||-.+.+.+-+.....--.+.+...|.++.
T Consensus 8 ~DyTe~Efi~lv~~I~~~~~~~e~~d~ll~~f~~~t 43 (85)
T 1gxg_A 8 SDYTETEFKKIIEDIINCEGDEKKQDDNLEHFISVT 43 (85)
T ss_dssp TTSCHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHTT
T ss_pred hhcCHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Confidence 689999999999999888644433555555555553
No 16
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=27.54 E-value=82 Score=21.89 Aligned_cols=56 Identities=13% Similarity=0.129 Sum_probs=44.1
Q ss_pred cCHHHHHHHHHHHHHhcCCCCCcCCcccccchhhhhhhCCCccchHHHHHHHHhccccC
Q 022354 61 ISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKSFLRIKIYDLLEAHYAEN 119 (298)
Q Consensus 61 lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDekL~~LFgk~~v~~f~m~klL~~H~~~~ 119 (298)
|+|.++...|.++|.+.-=.+| ..|-.|..|..-+|-+++...++...|+.+|--.
T Consensus 3 m~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~dlG~DSl~~~~l~~~le~~fgi~ 58 (82)
T 2cnr_A 3 ATQEEIVAGLAEIVNEIAGIPV---EDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVK 58 (82)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCT---TTCCTTSBTTTTSCCCHHHHHHHHHHHHGGGTBC
T ss_pred CCHHHHHHHHHHHHHHHhCCCH---HHCCCCcchhhccCCChHHHHHHHHHHHHHhCCC
Confidence 7899999999999887532232 3577888886556889999999999999998544
No 17
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.39 E-value=73 Score=23.66 Aligned_cols=60 Identities=8% Similarity=0.164 Sum_probs=47.2
Q ss_pred CCCccCHHHHHHHHHHHHHhcCCCCCcCCcccccchhhhhhhCCCccchHHHHHHHHhccccC
Q 022354 57 TTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKSFLRIKIYDLLEAHYAEN 119 (298)
Q Consensus 57 ~~~~lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDekL~~LFgk~~v~~f~m~klL~~H~~~~ 119 (298)
.+++|++.++...|.+.|.+.--.+| ..|-.|..|..-+|-+++...++...|+.+|--.
T Consensus 7 ~m~~m~~~~i~~~l~~~l~~~l~~~~---~~i~~d~~l~~dlG~DSL~~vel~~~le~~fgi~ 66 (99)
T 2dnw_A 7 GMPPLTLEGIQDRVLYVLKLYDKIDP---EKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFE 66 (99)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTSCT---TTCCTTCCCCCCCCCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCH---hhCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCC
Confidence 46789999999999999998632233 2477788885446899999999999999998543
No 18
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=25.47 E-value=90 Score=21.74 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=43.9
Q ss_pred cCHHHHHHHHHHHHHhcCCCCCcCCcccccchhhhhhhCCCccchHHHHHHHHhccccC
Q 022354 61 ISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKSFLRIKIYDLLEAHYAEN 119 (298)
Q Consensus 61 lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDekL~~LFgk~~v~~f~m~klL~~H~~~~ 119 (298)
|+|.++...|.+.|.+.-=.+| ..|-.|..|..-+|-+++...++...|+.+|--.
T Consensus 2 m~~~~i~~~l~~ii~~~l~~~~---~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~ 57 (81)
T 2lol_A 2 STTDKIEQKVIEMVAEKLNKDK---AIITTDSRFIEDLKADSLDTVELMMAIEVEYGID 57 (81)
T ss_dssp CSHHHHHHHHHHHHHHHSCCCT---TTCCTTCCHHHHTTCCHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHHHHCCCh---hhCCCCCcHHHhcCCcHHHHHHHHHHHHHHHCCC
Confidence 6788899999998887532233 2478888896667899999999999999998543
No 19
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=22.30 E-value=54 Score=23.46 Aligned_cols=56 Identities=7% Similarity=0.001 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHhcCCCCCcCCcccccchhhhhhhCCCccchHHHHHHHHhccccCC
Q 022354 62 SRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKSFLRIKIYDLLEAHYAENQ 120 (298)
Q Consensus 62 sr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDekL~~LFgk~~v~~f~m~klL~~H~~~~~ 120 (298)
++.++...|.++|.+.--.++ ..|..|..|..+-+-+++.+.++.-.|+.+|--.-
T Consensus 1 ~~~~i~~~i~~il~~~~~~~~---~~i~~d~~l~~~g~lDSl~~velv~~lE~~fgi~i 56 (80)
T 1dv5_A 1 ADEAIKNGVLDILADLTGSDD---VKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDA 56 (80)
T ss_dssp CCHHHHHHHHHHHHHHHTSSS---TTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCCC
T ss_pred CHHHHHHHHHHHHHHHhCCCc---ccCCCCcchhhccCcChHHHHHHHHHHHHHhCCcC
Confidence 456788888888887653332 24788888987755899999999999999986554
No 20
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=21.78 E-value=64 Score=27.51 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=28.9
Q ss_pred ecccCCCCCHHHHHHHHHHHHcCCCC------CccH-----HHHHHHHHH
Q 022354 249 ATLSDDNFSEEECEDLRQRVKDGLLK------RPTV-----VSSLLLFMR 287 (298)
Q Consensus 249 ~~iSn~dFTeeEc~rl~q~~~~g~~~------rpTv-----~di~~~~~~ 287 (298)
+.=.++.+|.+|++.|...+.....+ |||+ .||.++|++
T Consensus 146 AIk~g~~Ls~~Em~~Ll~~L~~~~~p~~CpHGRPt~~~l~~~elek~F~R 195 (197)
T 3kdg_A 146 SIKANRHLRNDEIKALLDDLRSTSDPFTCPHGRPIIIHHSTYEMEKMFKR 195 (197)
T ss_dssp ----CCCCCHHHHHHHHHHHHHSSCTTBCTTSCBCEEEEEHHHHHHHHCS
T ss_pred hccCCCCCCHHHHHHHHHHHHcCCCCCcCCCCCcEEEEeCHHHHHHHhCC
Confidence 44457899999999999999887765 8887 677777754
No 21
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=21.42 E-value=63 Score=25.36 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh
Q 022354 254 DNFSEEECEDLRQRVKDGLLKRPTVVSSLLLFMRN 288 (298)
Q Consensus 254 ~dFTeeEc~rl~q~~~~g~~~rpTv~di~~~~~~~ 288 (298)
+|+||+||-.+.+.+.+.. ..|-.++..++..+
T Consensus 8 ~DyTe~Efi~lv~~I~~~~--~~~E~e~d~ll~~f 40 (94)
T 3u43_A 8 SDYTEAEFLEFVKKICRAE--GATEEDDNKLVREF 40 (94)
T ss_dssp GGSBHHHHHHHHHHHHHTC--CSSHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 6899999999999998754 23444444443333
No 22
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=20.80 E-value=77 Score=21.86 Aligned_cols=56 Identities=13% Similarity=0.292 Sum_probs=41.8
Q ss_pred cCHHHHHHHHHHHHHhcCCCCCcCCcccccchhhhhhhCCCccchHHHHHHHHhccccC
Q 022354 61 ISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKSFLRIKIYDLLEAHYAEN 119 (298)
Q Consensus 61 lsr~~Vvk~lW~YIK~nnLqDP~~Kr~IiCDekL~~LFgk~~v~~f~m~klL~~H~~~~ 119 (298)
|+|.++...|.++|.+.-=.++ ..|-.|..|..-+|-+++...++...|+.+|--.
T Consensus 1 M~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~ 56 (80)
T 1x3o_A 1 MTEQEIFEKVKAVIADKLQVEP---EKVTLEARFIEDLGADSLDTVELIMGLEDEFGLE 56 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCG---GGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHHHhCCCH---HHCCCcCcHHhhcCccHHHHHHHHHHHHHHHCCC
Confidence 5778888888888876521222 3477888886667899999999999999998543
Done!