BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>022355
MIRLNAYCSTLPSAAQVKLGSSYGSFIIKNYKARKSSWGVSVRALKDETNGGTSSSAGRS
WEPGLEIEVPSEQRPVNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTAAA
SFDPSREPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWV
KPPEVKPVIKMLKQTLVGTGALLVTATLLFIFATPVEQFFQSTMTTKENPAIVPASKTKK
NFNIRKEELLQLPAEVMSDDDLAAAAAEAADGRPVYCRDRYYRALAGGQYCKWEDLVK

High Scoring Gene Products

Symbol, full name Information P value
CGLD27
AT5G67370
protein from Arabidopsis thaliana 1.4e-94
AT5G11840 protein from Arabidopsis thaliana 3.2e-26

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  022355
        (298 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2158197 - symbol:CGLD27 "AT5G67370" species:37...   941  1.4e-94   1
TAIR|locus:2142999 - symbol:AT5G11840 "AT5G11840" species...   296  3.2e-26   1


>TAIR|locus:2158197 [details] [associations]
            symbol:CGLD27 "AT5G67370" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AB007645
            InterPro:IPR009631 Pfam:PF06799 ProDom:PD016444 EMBL:AF360127
            EMBL:AY051028 IPI:IPI00535387 RefSeq:NP_201538.1 UniGene:At.6496
            STRING:Q9FN15 PaxDb:Q9FN15 PRIDE:Q9FN15 EnsemblPlants:AT5G67370.1
            GeneID:836872 KEGG:ath:AT5G67370 TAIR:At5g67370 eggNOG:NOG07098
            HOGENOM:HOG000272725 InParanoid:Q9FN15 OMA:RIYLGWS PhylomeDB:Q9FN15
            ProtClustDB:CLSN2687046 ArrayExpress:Q9FN15 Genevestigator:Q9FN15
            Uniprot:Q9FN15
        Length = 327

 Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
 Identities = 192/308 (62%), Positives = 220/308 (71%)

Query:    13 SAAQVKLGSSYGSFIIKNY--------KARKSSWGVSVRALKDETN--GGTSSSAGRSWE 62
             S +  KLGS Y S  I  Y        K ++    VSV+A++D+ N  GG+ S +G+SW+
Sbjct:    20 SNSSSKLGSYYDSSSIIKYGGISDVVGKKQELFLSVSVKAVEDKGNNGGGSMSFSGQSWD 79

Query:    63 PGLEIEVPSEQRPVNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTAAASF 122
             P  EIEVPS+QRPVNEYSSLK+G+LYSWGELG   F +RLGGLWLV F VLGVP AAASF
Sbjct:    80 PSSEIEVPSDQRPVNEYSSLKEGMLYSWGELGPSEFFIRLGGLWLVTFTVLGVPVAAASF 139

Query:   123 DPSREPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKP 182
             +PSREPLRF+LAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKP
Sbjct:   140 NPSREPLRFILAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKP 199

Query:   183 PEV------------KPVIKMLKQXXXXXXXXXXXXXXXFIFATPVEQFFQSTMTTKENP 230
             PEV            KPVIKMLKQ               F+FATPVE FF++T+ + EN 
Sbjct:   200 PEVLARDRLLGSYKVKPVIKMLKQTLIGTGALLVSAFVLFVFATPVEDFFKTTLGSTENQ 259

Query:   231 AIVPASKTKKNFNIRKEELLQLPAEVMSXXXXXXXXXXXXXGRPVYCRDRYYRALAGGQY 290
               V  S+T   FNIRKE+LL+LP +V++             GRPVYCRDRYYRALAGGQY
Sbjct:   260 PEVSISRTSNKFNIRKEQLLRLPVDVVTDDDLAAAAAEAADGRPVYCRDRYYRALAGGQY 319

Query:   291 CKWEDLVK 298
             CKWEDLVK
Sbjct:   320 CKWEDLVK 327


>TAIR|locus:2142999 [details] [associations]
            symbol:AT5G11840 "AT5G11840" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0015996 "chlorophyll catabolic process"
            evidence=RCA] EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:BT050414
            IPI:IPI00535315 RefSeq:NP_196745.4 UniGene:At.19926 STRING:B6IDH6
            PaxDb:B6IDH6 PRIDE:B6IDH6 EnsemblPlants:AT5G11840.1 GeneID:831057
            KEGG:ath:AT5G11840 TAIR:At5g11840 eggNOG:NOG313850
            HOGENOM:HOG000076884 OMA:LAVVRMY PhylomeDB:B6IDH6
            ProtClustDB:CLSN2716566 Genevestigator:B6IDH6 InterPro:IPR009631
            Pfam:PF06799 ProDom:PD016444 Uniprot:B6IDH6
        Length = 265

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 62/126 (49%), Positives = 84/126 (66%)

Query:    63 PGLEIEVPSEQRPVNEYSSLKDGVLYSW--GELGQGPFILRLGGLWLVAFMVLGVPTA-A 119
             P  +  VP EQ+P+NEY SL     +SW  G+L +    L L G    AF V G+P +  
Sbjct:    57 PETDCPVPPEQQPINEYQSLSTSFPFSWASGDLIEYSTRLFLTGASF-AFFV-GLPVSWF 114

Query:   120 ASFDPSREPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMW 179
              S  P  EP++ +LAA +  +F+V+L V+R+YLGW+YVG+RLLSA + YEE+GWYDGQ+W
Sbjct:   115 GSIGPEYEPVKRILAASSSGIFVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQVW 174

Query:   180 VKPPEV 185
             VK PEV
Sbjct:   175 VKTPEV 180


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      298       270   0.00097  114 3  11 22  0.49    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  617 (66 KB)
  Total size of DFA:  212 KB (2116 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.73u 0.15s 21.88t   Elapsed:  00:00:01
  Total cpu time:  21.73u 0.15s 21.88t   Elapsed:  00:00:01
  Start:  Thu May  9 18:06:15 2013   End:  Thu May  9 18:06:16 2013

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