BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022355
         (298 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1N05|A Chain A, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
           Kinase Reveals A Novel Atp And Riboflavin Binding Fold
 pdb|1N06|A Chain A, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
           Kinase Reveals A Novel Atp And Riboflavin Binding Fold
 pdb|1N06|B Chain B, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
           Kinase Reveals A Novel Atp And Riboflavin Binding Fold
 pdb|1N07|A Chain A, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
           Kinase Reveals A Novel Atp And Riboflavin Binding Fold
 pdb|1N07|B Chain B, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
           Kinase Reveals A Novel Atp And Riboflavin Binding Fold
 pdb|1N08|A Chain A, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
           Kinase Reveals A Novel Atp And Riboflavin Binding Fold
 pdb|1N08|B Chain B, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
           Kinase Reveals A Novel Atp And Riboflavin Binding Fold
          Length = 163

 Score = 30.0 bits (66), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 13/82 (15%)

Query: 95  QGPFILRLGGLWLVAF----MVLGVPTAAASFDPSREPLRFVLAAGTGTLFLVSLIVLRI 150
           Q P+ +R  G  +  F      LG+PTA  S D  +E LR+     +G  F  +++  R+
Sbjct: 19  QSPYPIRFEGKVVHGFGRGSKELGIPTANISEDAIQELLRY---RDSGVYFGYAMVQKRV 75

Query: 151 Y-----LGWS-YVGDRLLSAVI 166
           +     +GW+ Y  ++L SA +
Sbjct: 76  FPMVMSVGWNPYYKNKLRSAEV 97


>pdb|1A80|A Chain A, Native 2,5-Diketo-D-Gluconic Acid Reductase A From
           Corynbacterium Sp. Complexed With Nadph
          Length = 277

 Score = 29.6 bits (65), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 65  LEIEVPSEQRPVNEYSSLKDGVLYSWGELGQGPFIL 100
           +E+    +QR + ++++  D  + SWG LGQG + L
Sbjct: 161 IELHPAYQQREITDWAAAHDVKIESWGPLGQGKYDL 196


>pdb|1HW6|A Chain A, Crystal Structure Of Apo-2,5-Diketo-D-Gluconate Reductase
          Length = 278

 Score = 29.6 bits (65), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 65  LEIEVPSEQRPVNEYSSLKDGVLYSWGELGQGPFIL 100
           +E+    +QR + ++++  D  + SWG LGQG + L
Sbjct: 162 IELHPAYQQREITDWAAAHDVKIESWGPLGQGKYDL 197


>pdb|1M9H|A Chain A, Corynebacterium 2,5-dkgr A And Phe 22 Replaced With Tyr
           (f22y), Lys 232 Replaced With Gly (k232g), Arg 238
           Replaced With His (r238h)and Ala 272 Replaced With Gly
           (a272g)in Presence Of Nadh Cofactor
          Length = 278

 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 65  LEIEVPSEQRPVNEYSSLKDGVLYSWGELGQGPFIL 100
           +E+    +QR + ++++  D  + SWG LGQG + L
Sbjct: 162 IELHPAYQQREITDWAAAHDVKIESWGPLGQGKYDL 197


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,484,693
Number of Sequences: 62578
Number of extensions: 326739
Number of successful extensions: 676
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 673
Number of HSP's gapped (non-prelim): 5
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)