Query 022355
Match_columns 298
No_of_seqs 91 out of 93
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 04:08:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9j_B Integrin beta-3; transm 73.3 6.2 0.00021 27.1 4.8 36 125-160 5-40 (43)
2 2knc_B Integrin beta-3; transm 68.2 5.2 0.00018 30.6 3.9 48 129-176 10-59 (79)
3 2k1a_A Integrin alpha-IIB; sin 43.0 35 0.0012 23.5 4.3 32 123-154 4-36 (42)
4 2l8s_A Integrin alpha-1; trans 39.9 31 0.0011 25.2 3.7 32 124-155 4-36 (54)
5 2knc_A Integrin alpha-IIB; tra 32.2 57 0.0019 23.6 4.1 31 125-155 8-39 (54)
6 3h9u_A Adenosylhomocysteinase; 30.1 27 0.00092 34.0 2.7 38 244-283 58-108 (436)
7 1v8b_A Adenosylhomocysteinase; 26.6 19 0.00065 35.3 1.0 34 244-278 61-102 (479)
8 3gvp_A Adenosylhomocysteinase 25.9 33 0.0011 33.5 2.5 36 246-283 71-119 (435)
9 3ce6_A Adenosylhomocysteinase; 25.5 38 0.0013 33.2 2.9 35 244-278 75-124 (494)
10 3n58_A Adenosylhomocysteinase; 25.1 31 0.0011 34.1 2.2 37 245-283 61-110 (464)
11 3ond_A Adenosylhomocysteinase; 24.2 36 0.0012 33.6 2.4 32 244-277 72-111 (488)
12 2jln_A MHP1; hydantoin, transp 20.3 1.3E+02 0.0046 28.5 5.5 21 125-145 55-75 (501)
No 1
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=73.32 E-value=6.2 Score=27.15 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=29.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhChHHHHhh
Q 022355 125 SREPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDR 160 (298)
Q Consensus 125 ~~~pl~fiL~a~~ga~~l~~LvlLRLYLGWsYV~dR 160 (298)
+.-..-.++.+.+|+.+++.++++-+|--..+++||
T Consensus 5 ~~~n~~~Iv~gvi~~ivliGl~lLliwk~~~~i~Dr 40 (43)
T 2k9j_B 5 KGPDILVVLLSVMGAILLIGLAALLIWKLLITIHDR 40 (43)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEeehHHHHHHHHHHHHHHHHHHHHHHHheehh
Confidence 344566778889999999999999888888999998
No 2
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=68.22 E-value=5.2 Score=30.60 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHhhhccCccc--ccccCccCC
Q 022355 129 LRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIP--YEESGWYDG 176 (298)
Q Consensus 129 l~fiL~a~~ga~~l~~LvlLRLYLGWsYV~dRLlSatVe--YEESGWYDG 176 (298)
+-.++.+.+|+++++.|+++-+|--..+++||=--+.-| ...+.|.++
T Consensus 10 ~~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE~~~~~w~~~ 59 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERARAKWDTA 59 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 456778899999999999998888889999985444332 223455554
No 3
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=42.98 E-value=35 Score=23.51 Aligned_cols=32 Identities=28% Similarity=0.670 Sum_probs=25.5
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHH-hCh
Q 022355 123 DPSREPLRFVLAAGTGTLFLVSLIVLRIY-LGW 154 (298)
Q Consensus 123 ~p~~~pl~fiL~a~~ga~~l~~LvlLRLY-LGW 154 (298)
.....|+-.++.|.++++++++++..=|| .|+
T Consensus 4 ~~~~vp~wiIi~s~l~GLllL~li~~~LwK~GF 36 (42)
T 2k1a_A 4 EERAIPIWWVLVGVLGGLLLLTILVLAMWKVGF 36 (42)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CcCCcchHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 34557889999999999999999888777 453
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=39.89 E-value=31 Score=25.17 Aligned_cols=32 Identities=31% Similarity=0.692 Sum_probs=25.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHH-hChH
Q 022355 124 PSREPLRFVLAAGTGTLFLVSLIVLRIY-LGWS 155 (298)
Q Consensus 124 p~~~pl~fiL~a~~ga~~l~~LvlLRLY-LGWs 155 (298)
|..-|+-.++.|++|++++++|+..=|| .|+.
T Consensus 4 ~~~vp~WiIi~svl~GLLLL~Lii~~LwK~GFF 36 (54)
T 2l8s_A 4 PGRVPLWVILLSAFAGLLLLMLLILALWKIGFF 36 (54)
T ss_dssp CCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccCchHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 4567788899999999999998888777 4543
No 5
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=32.17 E-value=57 Score=23.63 Aligned_cols=31 Identities=29% Similarity=0.638 Sum_probs=24.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH-hChH
Q 022355 125 SREPLRFVLAAGTGTLFLVSLIVLRIY-LGWS 155 (298)
Q Consensus 125 ~~~pl~fiL~a~~ga~~l~~LvlLRLY-LGWs 155 (298)
..-|+-.++.|.+|+++++++++.=|| .|+.
T Consensus 8 ~~vp~wiIi~svl~GLllL~li~~~LwK~GFF 39 (54)
T 2knc_A 8 RAIPIWWVLVGVLGGLLLLTILVLAMWKVGFF 39 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 346888999999999999998888777 4643
No 6
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=30.07 E-value=27 Score=34.05 Aligned_cols=38 Identities=39% Similarity=0.575 Sum_probs=26.1
Q ss_pred cchHhhhcCCccc--------cCchHHHHHHHHHcCCCcee-----ccchhHh
Q 022355 244 IRKEELLQLPAEV--------MSDDDLAAAAAEAADGRPVY-----CRDRYYR 283 (298)
Q Consensus 244 ~r~~~ll~l~~~~--------~~DDd~Aaa~a~aa~grP~y-----c~dryyr 283 (298)
.--+.|..+-+|| .++||+|||-|+ .|.||| -.+.||.
T Consensus 58 ~l~~tL~~~GA~v~~~~~n~~stqd~~aaal~~--~gi~v~a~~ge~~~ey~~ 108 (436)
T 3h9u_A 58 VLIETLVELGAEVRWASCNIFSTQDHAAAAIAK--RGIPVFAWKGETEEEYMW 108 (436)
T ss_dssp HHHHHHHHTTCEEEEECSSTTTCCHHHHHHHHH--TTCCEEECTTCCHHHHHH
T ss_pred HHHHHHHHcCCEEEEecCCCCCCcHHHHHHHHh--cCCeEEEeCCCCHHHHHH
Confidence 3445666666665 688999988754 599999 3445653
No 7
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3
Probab=26.62 E-value=19 Score=35.25 Aligned_cols=34 Identities=26% Similarity=0.309 Sum_probs=27.0
Q ss_pred cchHhhhcCCcccc--------CchHHHHHHHHHcCCCceecc
Q 022355 244 IRKEELLQLPAEVM--------SDDDLAAAAAEAADGRPVYCR 278 (298)
Q Consensus 244 ~r~~~ll~l~~~~~--------~DDd~Aaa~a~aa~grP~yc~ 278 (298)
.--+.|..+-+||. ++||+|||-|+. .|.|||.-
T Consensus 61 ~l~~tL~~~Ga~v~~~~~n~~stqd~~aaal~~~-~gi~v~a~ 102 (479)
T 1v8b_A 61 LLIETLQKLGAQIRWCSCNIYSTADYAAAAVSTL-ENVTVFAW 102 (479)
T ss_dssp HHHHHHHHTTCEEEEECSSSSCCCHHHHHHHTTS-TTEEEECC
T ss_pred HHHHHHHHCCCEEEEecCCCCCchHHHHHHHhhc-CCceEEEe
Confidence 45678888888885 999999888542 69999975
No 8
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=25.87 E-value=33 Score=33.46 Aligned_cols=36 Identities=36% Similarity=0.522 Sum_probs=24.3
Q ss_pred hHhhhcCCccc--------cCchHHHHHHHHHcCCCceec-----cchhHh
Q 022355 246 KEELLQLPAEV--------MSDDDLAAAAAEAADGRPVYC-----RDRYYR 283 (298)
Q Consensus 246 ~~~ll~l~~~~--------~~DDd~Aaa~a~aa~grP~yc-----~dryyr 283 (298)
.+.|..+-+|| .++||+|||-|++ |.|||- .+.||+
T Consensus 71 ~~tL~~~GA~v~~~~~n~~stqd~~aaal~~~--gi~v~a~~g~~~~ey~~ 119 (435)
T 3gvp_A 71 METLGALGAQCRWAACNIYSTLNEVAAALAES--GFPVFAWKGESEDDFWW 119 (435)
T ss_dssp HHHHHHTTCEEEEEESSSSCCCHHHHHHHHHH--TCCEECCTTCCHHHHHH
T ss_pred HHHHHHCCCEEEEEecCCCcChHHHHHHHHhc--CCeEEEecCCCHHHHHH
Confidence 34555555444 6889998887654 999995 456664
No 9
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Probab=25.51 E-value=38 Score=33.16 Aligned_cols=35 Identities=37% Similarity=0.456 Sum_probs=27.0
Q ss_pred cchHhhhcCCccc--------cCchHHHHHHHHHcC-------CCceecc
Q 022355 244 IRKEELLQLPAEV--------MSDDDLAAAAAEAAD-------GRPVYCR 278 (298)
Q Consensus 244 ~r~~~ll~l~~~~--------~~DDd~Aaa~a~aa~-------grP~yc~ 278 (298)
.--+.|..+-+|| .++||+|||-|++-+ |.|||.-
T Consensus 75 ~l~~~l~~~ga~v~~~~~n~~stqd~~aaa~~~~~~~~~~~~~g~~v~a~ 124 (494)
T 3ce6_A 75 VLIETLTALGAEVRWASCNIFSTQDHAAAAVVVGPHGTPDEPKGVPVFAW 124 (494)
T ss_dssp HHHHHHHHTTCEEEEECSSTTCCCHHHHHHHHHCSSCCSSSCCSCCEECC
T ss_pred HHHHHHHHCCCeEEEeecCCCCchHHHHHHHhhhccccccCCCCeEEEEe
Confidence 4567788888887 499999999877322 9999975
No 10
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Probab=25.10 E-value=31 Score=34.08 Aligned_cols=37 Identities=41% Similarity=0.548 Sum_probs=25.4
Q ss_pred chHhhhcCCccc--------cCchHHHHHHHHHcCCCceec-----cchhHh
Q 022355 245 RKEELLQLPAEV--------MSDDDLAAAAAEAADGRPVYC-----RDRYYR 283 (298)
Q Consensus 245 r~~~ll~l~~~~--------~~DDd~Aaa~a~aa~grP~yc-----~dryyr 283 (298)
--+.|..+-+|| .+.||+|||-|+ .|.|||- .+.||.
T Consensus 61 lietL~a~GAev~~~~cN~~STqd~~aaal~~--~gi~v~A~kget~eey~~ 110 (464)
T 3n58_A 61 LIETLKVLGAEVRWASCNIFSTQDHAAAAIAA--TGTPVFAVKGETLEEYWT 110 (464)
T ss_dssp HHHHHHHTTCEEEEECSSTTCCCHHHHHHHHH--TTCCEEECTTCCHHHHHH
T ss_pred HHHHHHHcCCeEEEecCCCCCCcHHHHHHHHh--cCCeEEEeCCCCHHHHHH
Confidence 345566665555 588999988754 5999996 455663
No 11
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*
Probab=24.17 E-value=36 Score=33.62 Aligned_cols=32 Identities=38% Similarity=0.413 Sum_probs=23.1
Q ss_pred cchHhhhcCCccc--------cCchHHHHHHHHHcCCCceec
Q 022355 244 IRKEELLQLPAEV--------MSDDDLAAAAAEAADGRPVYC 277 (298)
Q Consensus 244 ~r~~~ll~l~~~~--------~~DDd~Aaa~a~aa~grP~yc 277 (298)
.--+.|..|-+|| .|.||+|||-|++ |.|||-
T Consensus 72 ~l~~tl~~~GA~v~~~~~n~~stqd~~aaa~~~~--g~~v~a 111 (488)
T 3ond_A 72 VLIETLTALGAEVRWCSCNIFSTQDHAAAAIARD--SAAVFA 111 (488)
T ss_dssp HHHHHHHHTTCEEEEECSSTTCCCHHHHHHHHHH--TCEEEE
T ss_pred HHHHHHHHcCCeEEEecCCCCCCcHHHHHHHHhc--CCeEEE
Confidence 3445666666665 5889999887654 999986
No 12
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=20.25 E-value=1.3e+02 Score=28.53 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=12.4
Q ss_pred CCchHHHHHHHHHHHHHHHHH
Q 022355 125 SREPLRFVLAAGTGTLFLVSL 145 (298)
Q Consensus 125 ~~~pl~fiL~a~~ga~~l~~L 145 (298)
.-+..+.+++..+|.++..++
T Consensus 55 GLs~~~a~lai~lG~li~~~~ 75 (501)
T 2jln_A 55 SFQVWQVIVAIAAGCTIAVIL 75 (501)
T ss_dssp TSCHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHH
Confidence 455666766666666554433
Done!