Query 022355
Match_columns 298
No_of_seqs 91 out of 93
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 04:08:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022355.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022355hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1li4a2 c.23.12.3 (A:3-189,A:3 29.9 11 0.00081 32.7 2.2 24 257-282 81-109 (267)
2 d1v8ba2 c.23.12.3 (A:4-234,A:3 16.6 17 0.0013 32.0 0.7 20 257-277 79-98 (313)
3 d1g47a2 g.39.1.3 (A:36-70) Pin 13.4 24 0.0017 21.8 0.5 16 271-287 19-34 (35)
4 d1e0na_ b.72.1.1 (A:) Hypothet 13.0 27 0.0019 20.9 0.6 9 271-279 9-17 (27)
5 d1oksa_ a.8.5.1 (A:) RNA polym 11.9 8 0.00059 26.6 -2.3 30 235-264 9-38 (54)
6 d1vk6a4 g.41.14.1 (A:97-125) N 9.1 25 0.0019 21.3 -0.5 7 276-282 22-28 (29)
7 d1xrda1 f.3.1.1 (A:1-52) Light 8.9 1.3E+02 0.0091 20.2 3.0 20 193-212 11-30 (52)
8 d2axtz1 f.17.5.1 (Z:1-62) Phot 8.4 3.1E+02 0.022 18.7 5.2 31 105-135 13-43 (62)
9 d1x3ha2 g.39.1.3 (A:43-74) Leu 7.7 54 0.0039 20.1 0.6 11 271-282 18-28 (32)
10 d1xmec1 f.23.9.1 (C:2-34) Bact 7.5 1.3E+02 0.0097 18.3 2.4 21 135-155 6-26 (33)
No 1
>d1li4a2 c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.91 E-value=11 Score=32.75 Aligned_cols=24 Identities=42% Similarity=0.677 Sum_probs=18.8
Q ss_pred cCchHHHHHHHHHcCCCceec-----cchhH
Q 022355 257 MSDDDLAAAAAEAADGRPVYC-----RDRYY 282 (298)
Q Consensus 257 ~~DDd~Aaa~a~aa~grP~yc-----~dryy 282 (298)
.++||+|||.++ .|+|||. .+.||
T Consensus 81 STQDdvaAaL~~--~Gi~VfA~~g~~~eey~ 109 (267)
T d1li4a2 81 STQDHAAAAIAK--AGIPVYAWKGETDEEYL 109 (267)
T ss_dssp CCCHHHHHHHHH--TTCCEEECTTCCHHHHH
T ss_pred cccccceeeecc--CCceEEEecCCCHHHHH
Confidence 689999988876 5999985 35566
No 2
>d1v8ba2 c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Probab=16.61 E-value=17 Score=32.03 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=14.8
Q ss_pred cCchHHHHHHHHHcCCCceec
Q 022355 257 MSDDDLAAAAAEAADGRPVYC 277 (298)
Q Consensus 257 ~~DDd~Aaa~a~aa~grP~yc 277 (298)
.+.||+|||-|+ ..|.|||-
T Consensus 79 STQD~vAAAl~~-~~gi~VfA 98 (313)
T d1v8ba2 79 STADYAAAAVST-LENVTVFA 98 (313)
T ss_dssp CCCHHHHHHHTT-STTEEEEC
T ss_pred ccchHHHHHhhc-cCCceEEE
Confidence 577888877654 37999984
No 3
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.36 E-value=24 Score=21.78 Aligned_cols=16 Identities=31% Similarity=0.760 Sum_probs=11.1
Q ss_pred CCCceeccchhHhhhcC
Q 022355 271 DGRPVYCRDRYYRALAG 287 (298)
Q Consensus 271 ~grP~yc~dryyra~Ag 287 (298)
+|+| ||+.-|.+-+|.
T Consensus 19 ~G~p-YCe~~Y~~lFAP 34 (35)
T d1g47a2 19 EGRK-YCEHDFQMLFAP 34 (35)
T ss_dssp TTEE-ECHHHHHHHCCC
T ss_pred CCEe-cChHhHHhhcCC
Confidence 4555 888888776663
No 4
>d1e0na_ b.72.1.1 (A:) Hypothetical protein Yjq8 (Set2p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.95 E-value=27 Score=20.91 Aligned_cols=9 Identities=44% Similarity=1.117 Sum_probs=7.1
Q ss_pred CCCceeccc
Q 022355 271 DGRPVYCRD 279 (298)
Q Consensus 271 ~grP~yc~d 279 (298)
||||+|...
T Consensus 9 ngrpmyyna 17 (27)
T d1e0na_ 9 NGRPLYYNA 17 (27)
T ss_dssp SSSEEEEET
T ss_pred CCceeeeeh
Confidence 899999753
No 5
>d1oksa_ a.8.5.1 (A:) RNA polymerase alpha subunit {Measles virus [TaxId: 11234]}
Probab=11.90 E-value=8 Score=26.59 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=23.5
Q ss_pred CcccccccccchHhhhcCCccccCchHHHH
Q 022355 235 ASKTKKNFNIRKEELLQLPAEVMSDDDLAA 264 (298)
Q Consensus 235 ~~~~~~~~~~r~~~ll~l~~~~~~DDd~Aa 264 (298)
+.+.+..-..||..|+.|=-++..|||++.
T Consensus 9 iIkSS~l~~~hK~~ml~LLndikg~~dL~e 38 (54)
T d1oksa_ 9 IIKSSRLEEDRKRYLMTLLDDIKGANDLAK 38 (54)
T ss_dssp HHHHSCSCHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHccccchHHH
Confidence 344455666788888888889999999986
No 6
>d1vk6a4 g.41.14.1 (A:97-125) NADH pyrophosphatase intervening domain {Escherichia coli [TaxId: 562]}
Probab=9.07 E-value=25 Score=21.34 Aligned_cols=7 Identities=71% Similarity=1.758 Sum_probs=4.6
Q ss_pred eccchhH
Q 022355 276 YCRDRYY 282 (298)
Q Consensus 276 yc~dryy 282 (298)
.|+.|||
T Consensus 22 hC~eRYY 28 (29)
T d1vk6a4 22 HCRERYY 28 (29)
T ss_dssp SSSCEEC
T ss_pred HHHhccC
Confidence 4677776
No 7
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=8.88 E-value=1.3e+02 Score=20.23 Aligned_cols=20 Identities=40% Similarity=0.652 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 022355 193 KQTLVGTGALLVTATLLFIF 212 (298)
Q Consensus 193 k~Tl~~la~ll~~~~llw~~ 212 (298)
|++++++++++++-+++..+
T Consensus 11 Rr~lva~~~fL~~LAl~IHf 30 (52)
T d1xrda1 11 RQALVGLATFLFVLALLIHF 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67899998876666555333
No 8
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.38 E-value=3.1e+02 Score=18.72 Aligned_cols=31 Identities=29% Similarity=0.357 Sum_probs=18.4
Q ss_pred HHHHHHHHhhhhcccceeCCCCchHHHHHHH
Q 022355 105 LWLVAFMVLGVPTAAASFDPSREPLRFVLAA 135 (298)
Q Consensus 105 ~w~~~~~iv~~PIAa~Sf~p~~~pl~fiL~a 135 (298)
+-+.+.++++.|++.+|=.--.+-=+.+.+|
T Consensus 13 i~~SF~lVVgVPV~~ASP~gW~~sK~lvfsG 43 (62)
T d2axtz1 13 VILSFVMVIGVPVAYASPQDWDRSKQLIFLG 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHCCTTTTHHHHHHHHH
T ss_pred HHHHHHHheeceEEEECCCcccccCceEEEc
Confidence 3445556689999988855333333444444
No 9
>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.75 E-value=54 Score=20.11 Aligned_cols=11 Identities=55% Similarity=1.295 Sum_probs=6.4
Q ss_pred CCCceeccchhH
Q 022355 271 DGRPVYCRDRYY 282 (298)
Q Consensus 271 ~grP~yc~dryy 282 (298)
+||| ||+--|.
T Consensus 18 ~g~P-yCe~HyH 28 (32)
T d1x3ha2 18 DGRP-FCELHYH 28 (32)
T ss_dssp SSCE-ECHHHHH
T ss_pred CCcc-chHHhhh
Confidence 5666 6665553
No 10
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=7.46 E-value=1.3e+02 Score=18.27 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhChH
Q 022355 135 AGTGTLFLVSLIVLRIYLGWS 155 (298)
Q Consensus 135 a~~ga~~l~~LvlLRLYLGWs 155 (298)
+++|...++.|..+-.|+|=-
T Consensus 6 gal~vi~il~l~ilvfw~gv~ 26 (33)
T d1xmec1 6 GALAVILVLTLTILVFWLGVY 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777787743
Done!