BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022356
(298 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26
OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
Length = 153
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 202 SSSSRSEKPPSNQVVVLRVSLHCKGCEGKVRKHLSRMKGVSSFNIDFAAKKVTVVGDVTP 261
S + +K Q V ++V + C+GCE KVR+ + MKGVSS ++ A KVTVVG V P
Sbjct: 14 SHGHKIKKRKQLQTVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGYVDP 73
Query: 262 LSVLASISKV--KNAQFWP 278
V+A +S K + WP
Sbjct: 74 NKVVARMSHRTGKKVELWP 92
>sp|A7Y3K2|YCF1_IPOPU Putative membrane protein ycf1 OS=Ipomoea purpurea GN=ycf1-A PE=3
SV=1
Length = 2057
Score = 38.9 bits (89), Expect = 0.045, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 78 KPNNNKKSSSSSSKKSSSDKKKKSSSNSKPLAEQTNKILSSTNNDATIYKDCYTAMPADI 137
K N+ KKS ++S KKS +D +KKS ++S+ +E ++ S T+++ D D
Sbjct: 1752 KTNSEKKSKTNSEKKSETDSEKKSETDSEKKSETDSEKKSETDSEKKSETDSEKKSETDS 1811
Query: 138 KKKS 141
+KKS
Sbjct: 1812 EKKS 1815
Score = 33.5 bits (75), Expect = 2.1, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 83 KKSSSSSSKKSSSDKKKKSSSNSKPLAEQTNKILSSTNNDATIYKDCYTAMPADIKKKS 141
KKS ++S KKS ++ +KKS ++S+ +E ++ S T+++ D D +KKS
Sbjct: 1749 KKSKTNSEKKSKTNSEKKSETDSEKKSETDSEKKSETDSEKKSETDSEKKSETDSEKKS 1807
>sp|Q9UBT6|POLK_HUMAN DNA polymerase kappa OS=Homo sapiens GN=POLK PE=1 SV=1
Length = 870
Score = 36.2 bits (82), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 106 KPLAEQTNKILSSTNNDATIYKDCYTAMPADIKKKSCAQLGDFITPPGSSRYLLSDAGFI 165
KP+A + +LS++N A + AMP I K+ C QL I PP +Y
Sbjct: 126 KPIAVGSMSMLSTSNYHARRF-GVRAAMPGFIAKRLCPQL--IIVPPNFDKYRAVSKEVK 182
Query: 166 DGLSDYDP 173
+ L+DYDP
Sbjct: 183 EILADYDP 190
>sp|Q6BK66|CCS1_DEBHA Superoxide dismutase 1 copper chaperone OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=CCS1 PE=3 SV=2
Length = 250
Score = 35.8 bits (81), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 216 VVLRVSLHCKGCEGKVRKHLSRMKGVSSFNIDFAAKKVTVVGDVTPLSVLASI 268
+V V + C+ C V L + G+S ++ID + VT G V P ++ +I
Sbjct: 7 IVFAVPMECQSCVDSVSSSLKSLNGISKYDIDLKSNLVTTEGSVPPSEIVKAI 59
>sp|Q60048|CADA_LISMN Probable cadmium-transporting ATPase OS=Listeria monocytogenes
GN=cadA PE=1 SV=1
Length = 711
Score = 35.0 bits (79), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 217 VLRV-SLHCKGCEGKVRKHLSRMKGVSSFNIDFAAKKVTVVGDVTPLSVLASISKVKNA 274
V RV L C C K +++ ++GV+ ++F A K+TV G+ ASI +V+ A
Sbjct: 6 VYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGE-------ASIQQVEQA 57
>sp|P58414|CADA_LISMO Probable cadmium-transporting ATPase OS=Listeria monocytogenes
serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=cadA PE=3
SV=1
Length = 707
Score = 34.7 bits (78), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 222 LHCKGCEGKVRKHLSRMKGVSSFNIDFAAKKVTVVGDVTPLSVLASISKVKNA 274
+ C C GK K++ ++GV+ ++F A K++V G+ SIS+++ A
Sbjct: 15 MSCTNCAGKFEKNVKNLEGVTDAKVNFGAGKISVYGE-------TSISQIEKA 60
>sp|O08997|ATOX1_MOUSE Copper transport protein ATOX1 OS=Mus musculus GN=Atox1 PE=2 SV=1
Length = 68
Score = 34.7 bits (78), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 220 VSLHCKGCEGKVRKHLSRMKGVSSFNIDFAAKKVTVVGDVTPLSVLASISKVKNA 274
V + C+GC V + L+++ GV FNID KKV + + + ++LA+++K A
Sbjct: 8 VDMTCEGCAEAVSRVLNKLGGVE-FNIDLPNKKVCIDSEHSSDTLLATLNKTGKA 61
>sp|Q64535|ATP7B_RAT Copper-transporting ATPase 2 OS=Rattus norvegicus GN=Atp7b PE=2
SV=1
Length = 1451
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 66/170 (38%), Gaps = 31/170 (18%)
Query: 116 LSSTNNDATIYKDCYTAMPADIKKKSCAQLGDFITPPGSSRYLLSDAGFIDGLSDYDPVL 175
+S +N +A I Y P D++ C D GF + + L
Sbjct: 175 VSLSNQEAVITYQPYLIQPEDLRDHIC------------------DMGFEAAIKNRTAPL 216
Query: 176 ALVPETGPEKTSTLINGDDSSAAKSPSSSSRSEKPPSNQ-----VVVLRV-SLHCKGCEG 229
L GP + L + + AA P +S + P +Q + LR+ +HCK C
Sbjct: 217 RL----GPIDINKLESTNLKRAAVPPIQNSNHLETPGHQQNHLATLPLRIDGMHCKSCVL 272
Query: 230 KVRKHLSRMKGVSSFNIDFAAKKVTVVGD---VTPLSVLASISKVKNAQF 276
+ ++ ++ GV + ++ K V D +TPL + +I + F
Sbjct: 273 NIEGNIGQLPGVQNIHVSLENKTAQVQYDSSCITPLFLQTAIEALPPGYF 322
>sp|A2AM05|CNTLN_MOUSE Centlein OS=Mus musculus GN=Cntln PE=1 SV=1
Length = 1397
Score = 33.1 bits (74), Expect = 2.2, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 19/107 (17%)
Query: 25 EASSSSTIHLGGR--AIDRHNPIIRDGRRLAKALPSAPCSSEPLPINPKPYHQLPKPNNN 82
+ SSSSTI L R ++ + N ++++ RR A+A + E N K HQ ++
Sbjct: 966 QKSSSSTISLRERIVSLQQQNSLLQNARRAAEA-----SAKEYKEANEKLLHQQQVSDHR 1020
Query: 83 KKSSSSSSKKSSSD------------KKKKSSSNSKPLAEQTNKILS 117
++S + KK + D KK +SSS+ LAE+ ++I++
Sbjct: 1021 FQTSRQTIKKLTLDLAELRKEKEDLLKKVESSSDIMSLAEEVSRIMA 1067
>sp|Q04656|ATP7A_HUMAN Copper-transporting ATPase 1 OS=Homo sapiens GN=ATP7A PE=1 SV=3
Length = 1500
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 61/166 (36%), Gaps = 22/166 (13%)
Query: 105 SKPLAEQTNKILSSTNNDATIYKDCYTAMPADIKKK--------------SCAQLGDFIT 150
S+PL ++T N D C ++ I KK + +T
Sbjct: 372 SQPLTQET-----VINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLT 426
Query: 151 PPGSSRYLLSDAGFIDGLSDYDPVLALVPETGPEKTSTLINGDDSSAAKSPS-SSSRSEK 209
P + R + D GF LSD + L ++ + P L+ + K + + E
Sbjct: 427 SPETLRGAIEDMGFDATLSDTNEPLVVIAQ--PSSEMPLLTSTNEFYTKGMTPVQDKEEG 484
Query: 210 PPSNQVVVLRVSLHCKGCEGKVRKHLSRMKGVSSFNIDFAAKKVTV 255
S++ + + C C + ++L R +G+ S + A K V
Sbjct: 485 KNSSKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEV 530
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.124 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,403,437
Number of Sequences: 539616
Number of extensions: 4477097
Number of successful extensions: 39646
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 290
Number of HSP's that attempted gapping in prelim test: 33919
Number of HSP's gapped (non-prelim): 3708
length of query: 298
length of database: 191,569,459
effective HSP length: 117
effective length of query: 181
effective length of database: 128,434,387
effective search space: 23246624047
effective search space used: 23246624047
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)