BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022358
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 384 bits (986), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/257 (70%), Positives = 218/257 (84%), Gaps = 1/257 (0%)
Query: 1 MGSLLLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60
MGSL+ REW GFQQFP+ATQ KLIE KLKQ+++N++T+LV+GKGGVGKSSTVNS+IGE
Sbjct: 1 MGSLV-REWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59
Query: 61 RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 120
+VV V+ FQ+E LRPVMVSR+ GGFT+NIIDTPGLVEAGYVN+QALELIKGFL+N+TIDV
Sbjct: 60 QVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDV 119
Query: 121 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRS 180
LLY DRLD YRVD+LD+Q++ A+T TFGK+IW K+LLVLTHAQ PPD L+Y+ + SKRS
Sbjct: 120 LLYVDRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRS 179
Query: 181 DALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITD 240
D+LLKTIR G+ + K EFED A+ V ENSGRCSKN+ DEK LPNG AWIP LVK ITD
Sbjct: 180 DSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITD 239
Query: 241 VATNKSKSIVVDKKLID 257
VATN+ K+I VD ++
Sbjct: 240 VATNQRKAIHVDAAALE 256
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 383 bits (984), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/257 (70%), Positives = 217/257 (84%), Gaps = 1/257 (0%)
Query: 1 MGSLLLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60
MGSL+ REW GFQQFP+ATQ KLIE KLKQ+++N++T+LV+GKGGVGKSSTVNS+IGE
Sbjct: 1 MGSLV-REWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59
Query: 61 RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 120
+VV V+ FQ+E LRPVMVSR+ GGFT+NIIDTPGLVEAGYVN+QALELIKGFL+N+TIDV
Sbjct: 60 QVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDV 119
Query: 121 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRS 180
LLY DRLD YRVD+LD+Q++ A+T TFGK+IW K+LLVLTHAQ PPD L+Y+ + SKRS
Sbjct: 120 LLYVDRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRS 179
Query: 181 DALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITD 240
D LLKTIR G+ + K EFED A+ V ENSGRCSKN+ DEK LPNG AWIP LVK ITD
Sbjct: 180 DELLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITD 239
Query: 241 VATNKSKSIVVDKKLID 257
VATN+ K+I VD ++
Sbjct: 240 VATNQRKAIHVDAAALE 256
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 382 bits (980), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/257 (70%), Positives = 217/257 (84%), Gaps = 1/257 (0%)
Query: 1 MGSLLLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60
MGSL+ REW GFQQFP+ATQ KLIE KLKQ+++N++T+LV+GKGGVGKSSTVNS+IGE
Sbjct: 1 MGSLV-REWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59
Query: 61 RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 120
+VV V+ FQ+E LRPVMVSR+ GGFT+NIIDTPGLVEAGYVN+QALELIKGFL+N+TIDV
Sbjct: 60 QVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDV 119
Query: 121 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRS 180
LLY DRLD Y VD+LD+Q++ A+T TFGK+IW K+LLVLTHAQ PPD L+Y+ + SKRS
Sbjct: 120 LLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRS 179
Query: 181 DALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITD 240
D+LLKTIR G+ + K EFED A+ V ENSGRCSKN+ DEK LPNG AWIP LVK ITD
Sbjct: 180 DSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITD 239
Query: 241 VATNKSKSIVVDKKLID 257
VATN+ K+I VD ++
Sbjct: 240 VATNQRKAIHVDAAALE 256
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 377 bits (968), Expect = e-105, Method: Compositional matrix adjust.
Identities = 176/247 (71%), Positives = 211/247 (85%)
Query: 5 LLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVT 64
L+REW GFQQFP+ATQ KLIE KLKQ+++N++T+LV+GKGGVGKSSTVNS+IGE+VV
Sbjct: 3 LVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 62
Query: 65 VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYA 124
V+ FQ+E LRPVMVSR+ GGFT+NIIDTPGLVEAGYVN+QALELIKGFL+N+TIDVLLY
Sbjct: 63 VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYV 122
Query: 125 DRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALL 184
DRLD Y VD+LD+Q++ A+T TFGK+IW K+LLVLTHAQ PPD L+Y+ + SKRSD+LL
Sbjct: 123 DRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLL 182
Query: 185 KTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATN 244
KTIR G+ + K EFED A+ V ENSGRCSKN+ DEK LPNG AWIP LVK ITDVATN
Sbjct: 183 KTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDVATN 242
Query: 245 KSKSIVV 251
+ K+I V
Sbjct: 243 QRKAIHV 249
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 353 bits (907), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 171/260 (65%), Positives = 210/260 (80%), Gaps = 1/260 (0%)
Query: 6 LREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTV 65
+R W+G F ATQ KL+ELL LKQE+VN+LTILVMGKGGVGKSSTVNS+IGERVV++
Sbjct: 8 VRGWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSI 67
Query: 66 NSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYAD 125
+ FQSE RPVMVSRS+ GFTLNIIDTPGL+E GY+N AL +IK FLL+KTIDVLLY D
Sbjct: 68 SPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVD 127
Query: 126 RLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLK 185
RLDAYRVD+LD+ + KA+T +FGK IW K+++ LTHAQ PPDGL YD + SKRS+ALL+
Sbjct: 128 RLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQ 187
Query: 186 TIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNK 245
+R GA L K + + +PV L+ENSGRC+KN++DEK+LPNG AWIP LV+ IT+VA NK
Sbjct: 188 VVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNK 246
Query: 246 SKSIVVDKKLIDGSGSDDKG 265
S+SI VDK LIDG + +G
Sbjct: 247 SESIFVDKNLIDGPNPNQRG 266
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 347 bits (889), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 169/258 (65%), Positives = 207/258 (80%), Gaps = 1/258 (0%)
Query: 6 LREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTV 65
+REW+G F ATQ KL+ELL LKQE+VN+LTILV GKGGVGKSSTVNS+IGERVV++
Sbjct: 8 VREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVXGKGGVGKSSTVNSIIGERVVSI 67
Query: 66 NSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYAD 125
+ FQSE RPV VSRS+ GFTLNIIDTPGL+E GY+N AL +IK FLL+KTIDVLLY D
Sbjct: 68 SPFQSEGPRPVXVSRSRAGFTLNIIDTPGLIEGGYINDXALNIIKSFLLDKTIDVLLYVD 127
Query: 126 RLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLK 185
RLDAYRVD+LD+ + KA+T +FGK IW K+++ LTHAQ PPDGL YD + SKRS+ALL+
Sbjct: 128 RLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQ 187
Query: 186 TIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNK 245
+R GA L K + + +PV L+ENSGRC+KN++DEK+LPNG AWIP LV+ IT+VA NK
Sbjct: 188 VVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNK 246
Query: 246 SKSIVVDKKLIDGSGSDD 263
S+SI VDK LID + D
Sbjct: 247 SESIFVDKNLIDKLAAAD 264
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 31 KQENVNT-LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFT-LN 88
+QE N+ L I+++GK G GKS+T NS++G +V + + S T L
Sbjct: 22 RQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV 81
Query: 89 IIDTPGLVEAGYVNYQ-ALELIKGFLL 114
++DTPG+ + N + + E+I+ LL
Sbjct: 82 VVDTPGIFDTEVPNAETSKEIIRCILL 108
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV---MVSRSKGGFTLNIIDTPGLV 96
I+V G+ VGKSS +N+++G+ V V+ + PV M G TL +DTPGL
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTL--VDTPGLD 94
Query: 97 EAG 99
+ G
Sbjct: 95 DVG 97
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 9/131 (6%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF---TLNIIDTPG 94
L I+++GK G GKS+ NS++ ++ + S+ L S+S+G + + IIDTP
Sbjct: 23 LRIILVGKTGTGKSAAGNSILRKQAFE-SKLGSQTLTKT-CSKSQGSWGNREIVIIDTPD 80
Query: 95 LVE-AGYVNYQALELIKGFLLNKT-IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIW 152
+ + E+ + +LL+ VLL +L Y D+Q + V FG+
Sbjct: 81 MFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQ--DQQAAQRVKEIFGEDAM 138
Query: 153 RKSLLVLTHAQ 163
++++ TH +
Sbjct: 139 GHTIVLFTHKE 149
>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
pdb|2XTO|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
Length = 240
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 9/131 (6%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF---TLNIIDTPG 94
L I+++GK G GKS+ NS++ ++ + S+ L S+S+G + + IIDTP
Sbjct: 3 LRIILVGKTGTGKSAAGNSILRKQAFE-SKLGSQTLTKT-CSKSQGSWGNREIVIIDTPD 60
Query: 95 LVE-AGYVNYQALELIKGFLLNKT-IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIW 152
+ + E+ + +LL+ VLL +L Y D+Q + V FG+
Sbjct: 61 MFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQ--DQQAAQRVKEIFGEDAM 118
Query: 153 RKSLLVLTHAQ 163
++++ TH +
Sbjct: 119 GHTIVLFTHKE 129
>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|C Chain C, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|D Chain D, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
Length = 209
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 9/131 (6%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF---TLNIIDTPG 94
L I+++GK G GKS+ NS++ ++ + S+ L S+S+G + + IIDTP
Sbjct: 6 LRIILVGKTGTGKSAAGNSILRKQAFE-SKLGSQTLTKT-CSKSQGSWGNREIVIIDTPD 63
Query: 95 LVE-AGYVNYQALELIKGFLLNKT-IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIW 152
+ + E+ + +LL+ VLL +L Y D+Q + V FG+
Sbjct: 64 MFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQ--DQQAAQRVKEIFGEDAM 121
Query: 153 RKSLLVLTHAQ 163
++++ TH +
Sbjct: 122 GHTIVLFTHKE 132
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVS-RSKGGFTLNIIDTPGL 95
I ++G+ VGKS+ +N ++G++ +++ S +++ R +V ++G + +DTPGL
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQK-ISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 63
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVS-RSKGGFTLNIIDTPGL 95
I ++G+ VGKS+ +N ++G++ +++ S +++ R +V ++G + +DTPGL
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQK-ISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 66
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTP 93
N + ++G+ VGKSS VN+++GE V V++ V S + I+DT
Sbjct: 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTA 251
Query: 94 GLVEAGYV-----NYQALELIKGFLLNKTIDVLL 122
G+ + G V Y L +K ++ + V+L
Sbjct: 252 GMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVL 285
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95
+ ++G+ VGKS+ N + GER+ V + S + N+IDT G+
Sbjct: 26 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI 81
>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino
Acid Residues 1-260
Length = 260
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF---TLNIIDTPG 94
L I+++GK G GKS+ NS++ ++ + S+ L S+S+G + + IIDTP
Sbjct: 23 LRIILVGKTGTGKSAAGNSILRKQAFE-SKLGSQTLTKT-CSKSQGSWGNREIVIIDTPD 80
Query: 95 LVE-AGYVNYQALELIKGFLLNKT-IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIW 152
+ E+ + +LL+ VLL +L Y D+Q + V FG+
Sbjct: 81 XFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQ--DQQAAQRVKEIFGEDAX 138
Query: 153 RKSLLVLTHAQ 163
++++ TH +
Sbjct: 139 GHTIVLFTHKE 149
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTP 93
N + ++G+ VGKSS VN+ +GE V V++ V S + I+DT
Sbjct: 172 NEEVIQFCLIGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTA 231
Query: 94 GLVEAGYV-----NYQALELIKGFLLNKTIDVLL 122
G + G V Y L +K ++ + V+L
Sbjct: 232 GXRKKGKVYETTEKYSVLRALKAIDRSEVVAVVL 265
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95
+ ++G+ VGKS+ N + GER+ V + S + N+IDT G+
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI 61
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 13/64 (20%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVS------RSKGGF-TLNII 90
L ++++G GGVGKSS +N R VT N F S+A + V G F TL I
Sbjct: 8 LKVILLGDGGVGKSSLMN-----RYVT-NKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIW 61
Query: 91 DTPG 94
DT G
Sbjct: 62 DTAG 65
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 61/124 (49%), Gaps = 20/124 (16%)
Query: 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-----GFTLNI 89
++ + + + G VGK+S N++ G + N V V + +G G+T+N+
Sbjct: 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVAN------WPGVTVEKKEGVFTYKGYTINL 56
Query: 90 IDTPGLVEAGYVNYQALELIKGFLLNKTID-VLLYADRLDAYR-------VDDLDRQIIK 141
ID PG GY + ++ + +LL D V+L AD ++ + + ++++++I
Sbjct: 57 IDLPGTYSLGYSSIDE-KIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVIL 115
Query: 142 AVTG 145
A+T
Sbjct: 116 AMTA 119
>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1
pdb|3V70|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 1
Length = 247
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV-SRSKGGFTLNIIDTPG 94
+T ++++G+ G GKS+T NS++G+R + R SR + ++DTP
Sbjct: 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPD 79
Query: 95 LV--EAGYVNYQALELIKGFLLNKT-IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQI 151
+ + + E +LL+ LL +L R D+Q ++ V FG+ +
Sbjct: 80 IFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLG--RFTAQDQQAVRQVRDMFGEDV 137
Query: 152 WRKSLLVLTHAQ 163
+ ++V T +
Sbjct: 138 LKWMVIVFTRKE 149
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 61/124 (49%), Gaps = 20/124 (16%)
Query: 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-----GFTLNI 89
++ + + + G VGK+S N++ G + N V V + +G G+T+N+
Sbjct: 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVAN------WPGVTVEKKEGVFTYKGYTINL 56
Query: 90 IDTPGLVEAGYVNYQALELIKGFLLNKTID-VLLYADRLDAYR-------VDDLDRQIIK 141
ID PG GY + ++ + +LL D V+L AD ++ + + ++++++I
Sbjct: 57 IDLPGTYSLGYSSIDE-KIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVIL 115
Query: 142 AVTG 145
A+T
Sbjct: 116 AMTA 119
>pdb|4A2I|V Chain V, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
Length = 277
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
Query: 17 SATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV 76
S TQ+ L K +E + + G+ GVGKSS +N+++G Q+E L
Sbjct: 145 SHTQDGL-----KPLEEALTGRISIFAGQSGVGKSSLLNALLG--------LQNEILTNT 191
Query: 77 MVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113
++ID+PG+ E G + + ++ +GF+
Sbjct: 192 AARLYHFPHGGDVIDSPGVREFGLWHLEPEQITQGFV 228
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 13/100 (13%)
Query: 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-----GFTLNI 89
++ + + + G VGK+S N++ G + N V V + +G G+T+N+
Sbjct: 3 LHXVKVALAGCPNVGKTSLFNALTGTKQYVAN------WPGVTVEKKEGVFTYKGYTINL 56
Query: 90 IDTPGLVEAGYVNYQALELIKGFLLNKTID-VLLYADRLD 128
ID PG GY + ++ + +LL D V+L AD ++
Sbjct: 57 IDLPGTYSLGYSSIDE-KIARDYLLKGDADLVILVADSVN 95
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 18/103 (17%)
Query: 7 REWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERV-VTV 65
RE FQ PS +K TI++ G VGKSS +N V V V
Sbjct: 14 RENLYFQGLPSINPHKK---------------TIILSGAPNVGKSSFMNIVSRANVDVQS 58
Query: 66 NSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALEL 108
SF ++ L + IIDTPGL++ + N +E+
Sbjct: 59 YSFTTKNLYVGHFDHKLNKY--QIIDTPGLLDRAFENRNTIEM 99
>pdb|1T9H|A Chain A, The Crystal Structure Of Yloq, A Circularly Permuted
Gtpase
Length = 307
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 16/99 (16%)
Query: 17 SATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEAL--- 73
S Q+ L +++ + + T + G+ GVGKSS +N++ E + N SE L
Sbjct: 158 SKDQDSLADIIPHFQDK-----TTVFAGQSGVGKSSLLNAISPELGLRTNEI-SEHLGRG 211
Query: 74 ----RPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALEL 108
R V + + GG + DTPG + + + EL
Sbjct: 212 KHTTRHVELIHTSGGL---VADTPGFSSLEFTDIEEEEL 247
>pdb|2YKR|W Chain W, 30s Ribosomal Subunit With Rsga Bound In The Presence Of
Gmppnp
Length = 350
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 41 LVMGKGGVGKSSTVNSVIG-ERVVTVNSF-------QSEALRPVMVSRSKGGFTLNIIDT 92
+ G+ GVGKSS +N+++G ++ + N Q + GG ++ID+
Sbjct: 211 IFAGQSGVGKSSLLNALLGLQKEILTNDVSDNSGLGQHTTTAARLYHFPHGG---DVIDS 267
Query: 93 PGLVEAGYVNYQALELIKGFL 113
PG+ E G + + ++ +GF+
Sbjct: 268 PGVREFGLWHLEPEQITQGFV 288
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 32/56 (57%)
Query: 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95
+ ++GK VGKS+ +N+++G +V ++ + + ++G + +DTPGL
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL 65
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 60 ERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114
ER +TV + +A+R ++ + L++IDTPG V+ Y +AL +G LL
Sbjct: 51 ERGITV---KXQAVRXFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALL 102
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 9 WAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVI-----GERVV 63
+ GF P+ K ++ T++V+G+ G+GKS+ +NS+ ERV+
Sbjct: 17 YVGFANLPNQVHRKSVK--------KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVI 68
Query: 64 T------VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 98
+ Q EA V + L ++DTPG +A
Sbjct: 69 PGAAEKIERTVQIEA-STVEIEERGVKLRLTVVDTPGYGDA 108
>pdb|3VE7|A Chain A, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Metallosphaera Sedula Complexed With
Inhibitor Bmp
pdb|3VE7|B Chain B, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Metallosphaera Sedula Complexed With
Inhibitor Bmp
pdb|3VE9|A Chain A, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Metallosphaera Sedula
pdb|3VE9|B Chain B, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Metallosphaera Sedula
Length = 215
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 61 RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG 99
R V F + A RP M+SR KG F ++ +PG+ G
Sbjct: 125 RRVNPKGFVAPATRPSMISRVKGDFPDKLVISPGVGTQG 163
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVV-TVNSFQSEALRPVMVS-------RSKGG--FTL 87
I+V+G+ G+GKS+ VN++ +V +S+ E P V +GG L
Sbjct: 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKL 62
Query: 88 NIIDTPGL 95
+IDTPG
Sbjct: 63 TVIDTPGF 70
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 60 ERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114
ER +TV + +A+R ++ + L++IDTPG V+ Y +AL +G LL
Sbjct: 51 ERGITV---KMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALL 102
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 40 ILVMGKGGVGKSSTVNSVIGE-----RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPG 94
+ V+G VGKS+ +N +I E V+T + F L + + G + DTPG
Sbjct: 165 VYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGA---TLYDTPG 221
Query: 95 LVE----AGYVNYQALELI 109
++ A +V+ + L++I
Sbjct: 222 IINHHQMAHFVDARDLKII 240
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 19/75 (25%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRP-------VMVSRSK-----GG- 84
T++V+G+ G+GKS+ +NS+ + + E P V V +SK GG
Sbjct: 32 FTLMVVGESGLGKSTLINSLF-----LTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGV 86
Query: 85 -FTLNIIDTPGLVEA 98
L I+DTPG +A
Sbjct: 87 QLLLTIVDTPGFGDA 101
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVE 97
T+L++G+ VGKS+ N ++ ++ V + PV + G T ++DT G+ +
Sbjct: 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD 61
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 38 LTILVMGKGGVGKSSTVNSVI-----GERVV------TVNSFQSEALRPVMVSRSKGGFT 86
T++V+G+ G+GKS+ +NS+ ER++ + Q EA V +
Sbjct: 6 FTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEA-STVEIEERGVKLR 64
Query: 87 LNIIDTPGLVEA 98
L ++DTPG +A
Sbjct: 65 LTVVDTPGYGDA 76
>pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq
From The Enterobacterial Species Salmonella Typhimurium
Length = 358
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 15/83 (18%)
Query: 41 LVMGKGGVGKSSTVNSVIG----------ERVVTVNSFQSEALRPVMVSRSKGGFTLNII 90
+ G+ GVGKSS +N+++G V + + A R + GG ++I
Sbjct: 219 IFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAAR--LYHFPHGG---DVI 273
Query: 91 DTPGLVEAGYVNYQALELIKGFL 113
D+PG+ E G + + ++ +GF+
Sbjct: 274 DSPGVREFGLWHLEPEQITQGFV 296
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 19/75 (25%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRP-------VMVSRSK-----GG- 84
T++V+G+ G+GKS+ +NS+ + + E P V V +SK GG
Sbjct: 4 FTLMVVGESGLGKSTLINSLF-----LTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGV 58
Query: 85 -FTLNIIDTPGLVEA 98
L I+DTPG +A
Sbjct: 59 QLLLTIVDTPGFGDA 73
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 19/75 (25%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRP-------VMVSRSK-----GG- 84
T++V+G+ G+GKS+ +NS+ + + E P V V +SK GG
Sbjct: 9 FTLMVVGESGLGKSTLINSLF-----LTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGV 63
Query: 85 -FTLNIIDTPGLVEA 98
L I+DTPG +A
Sbjct: 64 QLLLTIVDTPGFGDA 78
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 38 LTILVMGKGGVGKSSTVNSVI-----GERVVT------VNSFQSEALRPVMVSRSKGGFT 86
T+ V+G+ G+GKS+ +NS+ ERV++ + Q EA V +
Sbjct: 19 FTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEA-STVEIEERGVKLR 77
Query: 87 LNIIDTPGLVEA 98
L ++DTPG +A
Sbjct: 78 LTVVDTPGYGDA 89
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 20/101 (19%)
Query: 9 WAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVI-----GERVV 63
+ GF P+ K ++ T+ V+G+ G+GKS+ +NS+ ERV+
Sbjct: 17 YVGFANLPNQVHRKSVK--------KGFEFTLXVVGESGLGKSTLINSLFLTDLYPERVI 68
Query: 64 T------VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 98
+ Q EA V + L ++DTPG +A
Sbjct: 69 PGAAEKIERTVQIEA-STVEIEERGVKLRLTVVDTPGYGDA 108
>pdb|2YNM|A Chain A, Structure Of The Adpxalf3-stabilized Transition State Of
The Nitrogenase-like Dark-operative Protochlorophyllide
Oxidoreductase Complex From Prochlorococcus Marinus With
Its Substrate Protochlorophyllide A
pdb|2YNM|B Chain B, Structure Of The Adpxalf3-stabilized Transition State Of
The Nitrogenase-like Dark-operative Protochlorophyllide
Oxidoreductase Complex From Prochlorococcus Marinus With
Its Substrate Protochlorophyllide A
Length = 301
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 35/121 (28%)
Query: 38 LTILVMGKGGVGKSSTVN------SVIGERVVTVNS------------------------ 67
L I V GKGG+GKS+T + S +G++V+ +
Sbjct: 35 LVIAVYGKGGIGKSTTSSNLSAAFSKLGKKVLQIGCDPKHDSTFTLTHKMVPTVIDILEE 94
Query: 68 --FQSEALRP--VMVSRSKGGFTLNIIDTP-GLVEAGYVNYQALELIKGFLLNKTIDVLL 122
F SE LRP M G + P G GYV Q ++L+K L + DV++
Sbjct: 95 VDFHSEELRPQDFMFEGFNGVQCVESGGPPAGTGCGGYVTGQTVKLLKEHHLLEDTDVVI 154
Query: 123 Y 123
+
Sbjct: 155 F 155
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQ-SEALRPVMVSRSKGGFTLNIIDTPGLVE- 97
+ ++GK VGKS+ +N+++G +V ++ + +R + V + +DTPG+ E
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72
Query: 98 --AGYVNYQALELIKGFLLNKTIDVLLYA-DRLDAYRVDD 134
+ + + +E+ K L + DV+L+ D + +R D
Sbjct: 73 KKSDVLGHSMVEIAKQSL--EEADVILFMIDATEGWRPRD 110
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQ-SEALRPVMVSRSKGGFTLNIIDTPGLVE- 97
+ ++GK VGKS+ +N+++G +V ++ + +R + V + +DTPG+ E
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 71
Query: 98 --AGYVNYQALELIKGFLLNKTIDVLLYA-DRLDAYRVDD 134
+ + + +E+ K L + DV+L+ D + +R D
Sbjct: 72 KKSDVLGHSMVEIAKQSL--EEADVILFMIDATEGWRPRD 109
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 21 NKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERV-VTVNSFQSEALRPVMVS 79
NK E+L L ++ T+++ G VGKS+ + ++ + + F + R + V
Sbjct: 151 NKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTT---RGINVG 207
Query: 80 RSKGG-FTLNIIDTPGLVE 97
+ + G F IIDTPGL++
Sbjct: 208 QFEDGYFRYQIIDTPGLLD 226
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVS------RSKGGF-TLNII 90
I+++G GGVGKSS +N R VT N F S+ + V G F T+ I
Sbjct: 12 FKIILLGDGGVGKSSLMN-----RYVT-NKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIW 65
Query: 91 DTPG 94
DT G
Sbjct: 66 DTAG 69
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVM----VSRSKGG--FTLN 88
+ T+ +V+G G VGK+ + S T N F SE + V V+ GG +TL
Sbjct: 5 IQTIKCVVVGDGAVGKTCLLIS------YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG 58
Query: 89 IIDTPGL 95
+ DT GL
Sbjct: 59 LFDTAGL 65
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 23 LIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK 82
L+ +L KLK + IL++G GK++ + + E + + Q ++ V
Sbjct: 2 LLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQ--- 58
Query: 83 GGFTLNIIDTPG 94
GF LN+ D G
Sbjct: 59 -GFKLNVWDIGG 69
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In
Complex With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In
Complex With Unc119a
Length = 189
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 23 LIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK 82
L+ +L KLK + IL++G GK++ + + E + + Q ++ V
Sbjct: 3 LLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQ--- 59
Query: 83 GGFTLNIIDTPG 94
GF LN+ D G
Sbjct: 60 -GFKLNVWDIGG 70
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 21/116 (18%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGER---VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPG 94
L ++++GK VGKS+ +N ++ E V + + + +V R G I+DT G
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIR---GILFRIVDTAG 300
Query: 95 LVEAGYVNYQALELIKGFLLNKTI------DVLLYADRLDAYR-VDDLDRQIIKAV 143
V + +L++ + +T+ D++L+ LDA +D+ DR+I++ +
Sbjct: 301 ------VRSETNDLVERLGIERTLQEIEKADIVLFV--LDASSPLDEEDRKILERI 348
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian
Adenylyl Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And
Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 21 NKLIE-LLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSE 71
NK IE L K KQ T +L++G G GKS+ V + R++ VN F E
Sbjct: 23 NKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQM---RILHVNGFNGE 71
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 21 NKLIE-LLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSE 71
NK IE L K KQ T +L++G G GKS+ V + R++ VN F E
Sbjct: 23 NKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQM---RILHVNGFNGE 71
>pdb|2VQU|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VQU|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
Length = 846
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 101 VNYQALE-----LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKS 155
++YQA LI N ++ V L +DRLD L+ +++ T GK+I S
Sbjct: 643 LHYQAKRAFAPVLINPIQQNDSLSVYLISDRLDTMEQMTLEMKVVDFDGKTLGKKIQVHS 702
Query: 156 LLVLTHAQLC 165
L V + C
Sbjct: 703 LEVPANTSKC 712
>pdb|2JE8|A Chain A, Structure Of A Beta-Mannosidase From Bacteroides
Thetaiotaomicron
pdb|2JE8|B Chain B, Structure Of A Beta-Mannosidase From Bacteroides
Thetaiotaomicron
Length = 848
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 101 VNYQALE-----LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKS 155
++YQA LI N ++ V L +DRLD L+ +++ T GK+I S
Sbjct: 645 LHYQAKRAFAPVLINPIQQNDSLSVYLISDRLDTMEQMTLEMKVVDFDGKTLGKKIQVHS 704
Query: 156 LLVLTHAQLC 165
L V + C
Sbjct: 705 LEVPANTSKC 714
>pdb|2VJX|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VJX|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VL4|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VL4|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VMF|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VMF|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VO5|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VO5|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VOT|A Chain A, Structural And Biochemical Evidence For A Boat-like
Transition State In Beta-mannosidases
pdb|2VOT|B Chain B, Structural And Biochemical Evidence For A Boat-like
Transition State In Beta-mannosidases
pdb|2VQT|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VQT|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VR4|A Chain A, Transition-state Mimicry In Mannoside Hydrolysis:
Characterisation Of Twenty Six Inhibitors And Insight
Into Binding From Linear Free Energy Relationships And
3-d Structure
pdb|2VR4|B Chain B, Transition-state Mimicry In Mannoside Hydrolysis:
Characterisation Of Twenty Six Inhibitors And Insight
Into Binding From Linear Free Energy Relationships And
3-d Structure
Length = 846
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 101 VNYQALE-----LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKS 155
++YQA LI N ++ V L +DRLD L+ +++ T GK+I S
Sbjct: 643 LHYQAKRAFAPVLINPIQQNDSLSVYLISDRLDTMEQMTLEMKVVDFDGKTLGKKIQVHS 702
Query: 156 LLVLTHAQLC 165
L V + C
Sbjct: 703 LEVPANTSKC 712
>pdb|2WBK|A Chain A, Structure Of The Michaelis Complex Of Beta-Mannosidase,
Man2a, Provides Insight Into The Conformational
Itinerary Of Mannoside Hydrolysis
pdb|2WBK|B Chain B, Structure Of The Michaelis Complex Of Beta-Mannosidase,
Man2a, Provides Insight Into The Conformational
Itinerary Of Mannoside Hydrolysis
Length = 847
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 101 VNYQALE-----LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKS 155
++YQA LI N ++ V L +DRLD L+ +++ T GK+I S
Sbjct: 643 LHYQAKRAFAPVLINPIQQNDSLSVYLISDRLDTMEQMTLEMKVVDFDGKTLGKKIQVHS 702
Query: 156 LLVLTHAQLC 165
L V + C
Sbjct: 703 LEVPANTSKC 712
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 37 TLTILVMGKGGVGKSSTVNSVIGERVV-TVNSFQSEALRPVMVSRSKGG-FTLNIIDTPG 94
T I ++G GGVGK++ +N V+ R N+ PV +G N+ DT G
Sbjct: 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAG 70
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 21 NKLIE-LLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVS 79
NK IE L K KQ T +L++G G GKS+ V + R++ VN F ++ + V
Sbjct: 23 NKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQM---RILHVNGFNGDSEKATKVQ 79
Query: 80 RSKGG 84
K
Sbjct: 80 DIKNN 84
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 40 ILVMGKGGVGKSS-TVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 98
++++G GGVGKS+ T+ + E V ++++ R +V + ++I+DT GL +
Sbjct: 6 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGLEDY 64
Query: 99 GYVNYQALELIKGFLL 114
+ +GFLL
Sbjct: 65 AAIRDNYFRSGEGFLL 80
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 40 ILVMGKGGVGKSS-TVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 98
++++G GGVGKS+ T+ + E V ++++ R +V + ++I+DT GL +
Sbjct: 10 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGLEDY 68
Query: 99 GYVNYQALELIKGFLL 114
+ +GFLL
Sbjct: 69 AAIRDNYFRSGEGFLL 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,157,776
Number of Sequences: 62578
Number of extensions: 386212
Number of successful extensions: 1117
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 1070
Number of HSP's gapped (non-prelim): 100
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)