BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022358
(298 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O23680|TOC33_ARATH Translocase of chloroplast 33, chloroplastic OS=Arabidopsis
thaliana GN=TOC33 PE=1 SV=1
Length = 297
Score = 437 bits (1124), Expect = e-122, Method: Compositional matrix adjust.
Identities = 208/297 (70%), Positives = 251/297 (84%), Gaps = 1/297 (0%)
Query: 1 MGSLLLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60
MGSL+ REW GFQQFP+ATQ KLIE KLKQ+++N++T+LV+GKGGVGKSSTVNS+IGE
Sbjct: 1 MGSLV-REWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59
Query: 61 RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 120
+VV V+ FQ+E LRPVMVSR+ GGFT+NIIDTPGLVEAGYVN+QALELIKGFL+N+TIDV
Sbjct: 60 QVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDV 119
Query: 121 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRS 180
LLY DRLD YRVD+LD+Q++ A+T TFGK+IW K+LLVLTHAQ PPD L+Y+ + SKRS
Sbjct: 120 LLYVDRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRS 179
Query: 181 DALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITD 240
D+LLKTIR G+ + K EFED A+ V ENSGRCSKN+ DEK LPNG AWIP LVK ITD
Sbjct: 180 DSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITD 239
Query: 241 VATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLILKWIEGAIKSDIAKDKKP 297
VATN+ K+I VDKK++DGS SDDKGK IP +IG Q+LI+K I+GAI++DI KP
Sbjct: 240 VATNQRKAIHVDKKMVDGSYSDDKGKKLIPLIIGAQYLIVKMIQGAIRNDIKTSGKP 296
>sp|Q38906|TOC34_ARATH Translocase of chloroplast 34, chloroplastic OS=Arabidopsis
thaliana GN=TOC34 PE=1 SV=2
Length = 313
Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust.
Identities = 183/293 (62%), Positives = 235/293 (80%), Gaps = 1/293 (0%)
Query: 6 LREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTV 65
LREW G QQFP ATQ+KL+E+L K K+E+V++LT+LVMGKGGVGKSSTVNSVIGE+ V
Sbjct: 7 LREWIGIQQFPPATQSKLLEILGKYKEEDVSSLTVLVMGKGGVGKSSTVNSVIGEKAAAV 66
Query: 66 NSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYAD 125
++FQSE LRP +VSR++ GFTLNIIDTPGL+E GYVN QA+ +IK FLLN TIDVLLY D
Sbjct: 67 STFQSEGLRPTLVSRTRSGFTLNIIDTPGLIEGGYVNDQAINIIKRFLLNMTIDVLLYVD 126
Query: 126 RLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLK 185
RLD YRVDDLDRQ++ A+T FGK+IW+KS LVLTHAQ PPDGLNY+ + SKRS+ALLK
Sbjct: 127 RLDVYRVDDLDRQVVGAITDAFGKEIWKKSALVLTHAQFSPPDGLNYNHFVSKRSNALLK 186
Query: 186 TIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNK 245
I+ GA L K + + +++PV LVENSGRC KNE+DEKILP G +WIP L IT+++ N
Sbjct: 187 VIQTGAQLKKQDLQGFSIPVILVENSGRCHKNESDEKILPCGTSWIPNLFNKITEISFNG 246
Query: 246 SKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQW-LILKWIEGAIKSDIAKDKKP 297
+K+I VDKKL++G +++GK IP + Q+ L++K + AIKSD++++ KP
Sbjct: 247 NKAIHVDKKLVEGPNPNERGKKLIPLMFAFQYLLVMKPLVRAIKSDVSRESKP 299
>sp|Q41009|TOC34_PEA Translocase of chloroplast 34 OS=Pisum sativum GN=TOC34 PE=1 SV=1
Length = 310
Score = 388 bits (996), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/293 (64%), Positives = 233/293 (79%), Gaps = 2/293 (0%)
Query: 6 LREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTV 65
+REW+G F ATQ KL+ELL LKQE+VN+LTILVMGKGGVGKSSTVNS+IGERVV++
Sbjct: 8 VREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSI 67
Query: 66 NSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYAD 125
+ FQSE RPVMVSRS+ GFTLNIIDTPGL+E GY+N AL +IK FLL+KTIDVLLY D
Sbjct: 68 SPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVD 127
Query: 126 RLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLK 185
RLDAYRVD+LD+ + KA+T +FGK IW K+++ LTHAQ PPDGL YD + SKRS+ALL+
Sbjct: 128 RLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQ 187
Query: 186 TIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNK 245
+R GA L K + + +PV L+ENSGRC+KN++DEK+LPNG AWIP LV+ IT+VA NK
Sbjct: 188 VVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNK 246
Query: 246 SKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLIL-KWIEGAIKSDIAKDKKP 297
S+SI VDK LIDG + +GK+WIP + LQ+L L K IE I+ DIA + KP
Sbjct: 247 SESIFVDKNLIDGPNPNQRGKLWIPLIFALQYLFLAKPIEALIRRDIATETKP 299
>sp|Q9LUS2|TC120_ARATH Translocase of chloroplast 120, chloroplastic OS=Arabidopsis
thaliana GN=TOC120 PE=1 SV=1
Length = 1089
Score = 135 bits (339), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 14/222 (6%)
Query: 23 LIELLSKLKQENVN-TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS 81
+ E L Q+ ++ + TI+V+GK GVGKS+T+NS+ E ++ ++FQ + +
Sbjct: 441 MAEQLEAAAQDPLDFSCTIMVLGKSGVGKSATINSIFDELKISTDAFQVGTKKVQDIEGF 500
Query: 82 KGGFTLNIIDTPGLVEA---GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQ 138
G + +IDTPGL+ + + N + L+ ++ F+ D++LY DRLD D D
Sbjct: 501 VQGIKVRVIDTPGLLPSWSDQHKNEKILKSVRAFIKKSPPDIVLYLDRLDMQSRDSGDMP 560
Query: 139 IIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLN-----YDVYCSKRSDALLKTIRLGAGL 193
+++ +T FG IW +++ LTHA PPDG N YD++ ++RS + + IR AG
Sbjct: 561 LLRTITDVFGPSIWFNAIVGLTHAASAPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGD 620
Query: 194 GKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLV 235
+ PV+LVEN C N +++LPNG W P L+
Sbjct: 621 MR-----LMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLL 657
>sp|Q9SLF3|TC132_ARATH Translocase of chloroplast 132, chloroplastic OS=Arabidopsis
thaliana GN=TOC132 PE=1 SV=1
Length = 1206
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 111/207 (53%), Gaps = 13/207 (6%)
Query: 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLV 96
+ TI+V+GK GVGKS+T+NS+ E ++FQ R V G + +IDTPGL+
Sbjct: 574 SCTIMVLGKSGVGKSATINSIFDEVKFCTDAFQMGTKRVQDVEGLVQGIKVRVIDTPGLL 633
Query: 97 EA---GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWR 153
+ N + L +K F+ D++LY DRLD D D +++ ++ FG IW
Sbjct: 634 PSWSDQAKNEKILNSVKAFIKKNPPDIVLYLDRLDMQSRDSGDMPLLRTISDVFGPSIWF 693
Query: 154 KSLLVLTHAQLCPPDGLN-----YDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALV 208
+++ LTHA PPDG N YD++ ++RS + + IR AG + PV+LV
Sbjct: 694 NAIVGLTHAASVPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGDMR-----LMNPVSLV 748
Query: 209 ENSGRCSKNENDEKILPNGNAWIPTLV 235
EN C N +++LPNG W P L+
Sbjct: 749 ENHSACRTNRAGQRVLPNGQVWKPHLL 775
>sp|O81283|TC159_ARATH Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana
GN=TOC159 PE=1 SV=1
Length = 1503
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 126/228 (55%), Gaps = 12/228 (5%)
Query: 18 ATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVM 77
A + K +E ++ +E + +L ILV+GK GVGKS+T+NS++G ++ ++++F
Sbjct: 836 AAKKKAVESEAEGNEELIFSLNILVLGKAGVGKSATINSILGNQIASIDAFGLSTTSVRE 895
Query: 78 VSRSKGGFTLNIIDTPGLVEAGY---VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDD 134
+S + G + IDTPGL A N + L +K + D++LY DRLD D
Sbjct: 896 ISGTVNGVKITFIDTPGLKSAAMDQSTNAKMLSSVKKVMKKCPPDIVLYVDRLDTQTRDL 955
Query: 135 LDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG-----LNYDVYCSKRSDALLKTIRL 189
+ +++ +T + G IW+ +++ LTHA PPDG L+YDV+ ++ S + ++I
Sbjct: 956 NNLPLLRTITASLGTSIWKNAIVTLTHAASAPPDGPSGTPLSYDVFVAQCSHIVQQSI-- 1013
Query: 190 GAGLGKHEFEDYAV--PVALVENSGRCSKNENDEKILPNGNAWIPTLV 235
G +G + ++ PV+LVEN C KN K+LPNG W L+
Sbjct: 1014 GQAVGDLRLMNPSLMNPVSLVENHPLCRKNREGVKVLPNGQTWRSQLL 1061
>sp|Q552Z6|GTPA_DICDI GTP-binding protein A OS=Dictyostelium discoideum GN=gtpA PE=3 SV=1
Length = 449
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 124/243 (51%), Gaps = 18/243 (7%)
Query: 19 TQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV 78
T +L E+L+ LK N +L++G+ GVGKSST+N+V G + V+S +S P
Sbjct: 134 TTEELQEMLAVLKGVQ-NECNVLLLGRTGVGKSSTLNTVFGIDI-PVHSSESCTQDPFTY 191
Query: 79 SRSKGGFTLNIIDTPGLVEAG--YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLD 136
SR GF LNIIDTPG +++ V+ + I+ +L KTI +L+ ++ R D
Sbjct: 192 SRVVNGFKLNIIDTPGFLDSQGELVDSNNMIKIQRYLSGKTIHCVLFVEKFTETRFDGAH 251
Query: 137 RQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCS--------KRSDALLKTIR 188
+ +I T G Q+WR + +VLT+A PD YD + K +A R
Sbjct: 252 QLVINQFTEKLGPQLWRNAAVVLTYANSVLPDSC-YDGFDEEDDVGPWKKHYEARALQFR 310
Query: 189 -----LGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVAT 243
+ A L + ++ +PV +ENS RC +NE +++L +G + L+ G+ +
Sbjct: 311 KFFAGILAQLPQDDYPPKHIPVYAMENSRRCKRNEQGQRVLIDGTPCLHLLISGLLKMVD 370
Query: 244 NKS 246
K+
Sbjct: 371 PKT 373
>sp|Q6S5G3|TOC90_ARATH Translocase of chloroplast 90, chloroplastic OS=Arabidopsis
thaliana GN=TOC90 PE=1 SV=1
Length = 793
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 102/207 (49%), Gaps = 13/207 (6%)
Query: 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL- 95
+L ILV+GK GVGKS+T+NS+ G+ ++F+ R V + G + IDTPG
Sbjct: 166 SLRILVLGKTGVGKSATINSIFGQPKSETDAFRPGTDRIEEVMGTVSGVKVTFIDTPGFH 225
Query: 96 ---VEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIW 152
+ N + L IK ++ + DV+LY DRLD + D +++ +T FG IW
Sbjct: 226 PLSSSSTRKNRKILLSIKRYVKKRPPDVVLYLDRLDMIDMRYSDFSLLQLITEIFGAAIW 285
Query: 153 RKSLLVLTHAQLCPP----DGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALV 208
++LV+TH+ +NY+ Y +R D + I K E PV LV
Sbjct: 286 LNTILVMTHSAATTEGRNGQSVNYESYVGQRMDVVQHYIHQAVSDTKLE-----NPVLLV 340
Query: 209 ENSGRCSKNENDEKILPNGNAWIPTLV 235
EN C KN E +LPNG W P +
Sbjct: 341 ENHPSCKKNLAGEYVLPNGVVWKPQFM 367
>sp|A5PKB7|GIMA6_BOVIN GTPase IMAP family member 6 OS=Bos taurus GN=GIMAP6 PE=2 SV=1
Length = 341
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 19/151 (12%)
Query: 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKG-----GFTL 87
+ TL ++++GK G GKS+T NS++G RV F+S+ + RPV + +G G L
Sbjct: 90 TLQTLWLILVGKSGSGKSATGNSILGRRV-----FESKLSARPVTQAFQQGCRAWEGREL 144
Query: 88 NIIDTPGLVE---AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVT 144
+IDTP ++ AG+ Q + L K VLL R + D+Q+ +
Sbjct: 145 QVIDTPDILSPWAAGWATAQGVGEAGTGSLPKQYAVLLVT---QLGRFTEEDQQVAGRLE 201
Query: 145 GTFGKQIWRKSLLVLTHAQLCPPDGLNYDVY 175
FGK I +++LV T + DG + + Y
Sbjct: 202 EVFGKGILARTILVFTRKEDL--DGRSLETY 230
>sp|P70224|GIMA1_MOUSE GTPase IMAP family member 1 OS=Mus musculus GN=Gimap1 PE=1 SV=3
Length = 277
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 6/144 (4%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV-MVSRSKGGFTLNIIDTPGLV 96
L ++++G+ G GKS+T NS++G++ R + SR G+ + ++DTP +
Sbjct: 4 LRLILVGRTGTGKSATGNSILGQKCFLSRLGAVPVTRSCTLASRMWAGWQVEVVDTPDIF 63
Query: 97 --EAGYVNYQALELIKGFLLNKT-IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWR 153
E + +E + F+L+ LL +L + + D Q + AV FGKQ+
Sbjct: 64 SSEIPRTDPGCVETARCFVLSAPGPHALLLVTQLGRFTMQ--DSQALAAVKRLFGKQVMA 121
Query: 154 KSLLVLTHAQLCPPDGLNYDVYCS 177
++++V T + D L V+C+
Sbjct: 122 RTVVVFTRQEDLAGDSLQDYVHCT 145
>sp|Q6P9H5|GIMA6_HUMAN GTPase IMAP family member 6 OS=Homo sapiens GN=GIMAP6 PE=2 SV=1
Length = 292
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 23/168 (13%)
Query: 12 FQQFPSA------TQNKLIELLSKLKQENVNT---LTILVMGKGGVGKSSTVNSVIGERV 62
++Q P +Q+ ++EL L+++ T L +++MGK G GKS+T NS++G V
Sbjct: 6 YEQIPQENPPEELSQDPVLELSGGLREKEQKTPRRLRLILMGKTGSGKSATGNSILGRDV 65
Query: 63 VTVNSFQSE-ALRPVM-----VSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116
F+S+ + RPV SR G L +IDTP ++ A + + +L+
Sbjct: 66 -----FESKLSTRPVTKTSQRRSREWAGKELEVIDTPNILSPQVSPEVADAICQAIVLSA 120
Query: 117 T-IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163
+L +L R D D+Q+++ + FG + ++LV T +
Sbjct: 121 PGPHAVLLVTQLG--RFTDEDQQVVRRLQEVFGVGVLGHTILVFTRKE 166
>sp|Q4KLG2|GIMA8_RAT GTPase IMAP family member 8 OS=Rattus norvegicus GN=Gimap8 PE=2
SV=1
Length = 688
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 15/168 (8%)
Query: 28 SKLKQ-ENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--- 83
S KQ + +TL +L++GK G GKS+T N+++G+ V F+S ++ R +
Sbjct: 38 SNFKQSQGTSTLRLLLLGKQGAGKSATGNTILGKAV-----FESRFSHHMVTKRCQSESV 92
Query: 84 ---GFTLNIIDTPGLVEA-GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQI 139
G + +IDTP L + G Q L + L VLL + + D++
Sbjct: 93 SVRGKQVIVIDTPDLFSSLGCPEVQQQNLRQCLDLLADPYVLLLVTPIG--HSTEEDKKT 150
Query: 140 IKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTI 187
I+ + G FG Q +R ++V T D L + K L++ I
Sbjct: 151 IEGIQGVFGPQAYRHMIVVFTREDELGEDTLQNHIESKKYLKKLIENI 198
Score = 38.1 bits (87), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 94/221 (42%), Gaps = 25/221 (11%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLN-----IIDT 92
L I+++G+ GVGKS+T N+++G R V+ +++ PV G TL+ ++DT
Sbjct: 475 LNIILLGRSGVGKSATGNTILG-RPAFVSQLRAQ---PVTSRSQSGRRTLDWQDIVVVDT 530
Query: 93 PGLVEAGYVNYQALEL---IKGFLLNKTIDVL-LYADRLDAYRVDDLDRQIIKAVTGTFG 148
P L + +L IK LL + + ++ R D +++ + +F
Sbjct: 531 PSLNQMSGTEKNPAQLKKEIKQCLLQNCEEGMKVFVLVFQLGRFTQEDEAVVEQLEASFE 590
Query: 149 KQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTI------RLGAGLGKHEFEDYA 202
+ I + +++ T + DG YD + + + +LK I R+ A K ED
Sbjct: 591 ENIMKYMIVLFTRKEDL-GDGDLYD-FTNNTKNKVLKRIFKKCKGRVCAFNNKETGEDQE 648
Query: 203 VPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVAT 243
V + K DE + +W+ L + + T
Sbjct: 649 TQVKALLTIANDLKRSYDE----HSTSWMDQLKSAVGQITT 685
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 20/161 (12%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTPGL 95
L +L+MGK GVGKS+ NS++G++V + + + S S+ IID+P +
Sbjct: 284 LRVLLMGKRGVGKSAAGNSILGKQVFKTQFSEKQRVTEAFASHSRLWNQKKFLIIDSPEI 343
Query: 96 ----VEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQI 151
++ V FLL + L + D IIK + FG++
Sbjct: 344 SSWKLDESDVKEHTFPGPHAFLLVTPLGSSL--------KSGDSVFSIIKRI---FGEKF 392
Query: 152 WRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAG 192
+ ++++ T + +G + D + +K +DAL I++ G
Sbjct: 393 IKFTIILFTRKE--DFEGQDLDTF-TKENDALCNLIQIFEG 430
>sp|Q5FVN6|GIMA6_RAT GTPase IMAP family member 6 OS=Rattus norvegicus GN=Gimap6 PE=2
SV=1
Length = 304
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 15/147 (10%)
Query: 25 ELLSKLKQENVNT--LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRS 81
EL LK++ + L +L++GK G GKS+T NS++G +V F+S+ + RPV ++
Sbjct: 88 ELTKDLKEKKLTPKRLQLLLVGKTGSGKSATGNSILGRQV-----FESKISARPVTMAFQ 142
Query: 82 KG-----GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLD 136
KG G L +IDTP ++ + I L + +L ++ Y + D
Sbjct: 143 KGSRELEGKELEVIDTPDILSPQNQPEATAKKICDILASPGPHAVLLVIQVGRYTTE--D 200
Query: 137 RQIIKAVTGTFGKQIWRKSLLVLTHAQ 163
++ + + FG I ++LV T +
Sbjct: 201 QEAARCLQEIFGNGILAYTILVFTRKE 227
>sp|Q75N62|GIMA8_MOUSE GTPase IMAP family member 8 OS=Mus musculus GN=Gimap8 PE=2 SV=1
Length = 688
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 16 PSATQNKLIELLSKLKQ-ENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALR 74
PSA+Q + KQ + +TL +L++GK G GKS+T N+++G+ V F+S+
Sbjct: 30 PSASQGQE----GNFKQNQGTSTLRLLLLGKQGAGKSATGNTILGKAV-----FESKFSD 80
Query: 75 PVMVSRSKG------GFTLNIIDTPGL---VEAGYVNYQALELIKGFLLNKTIDVLLYAD 125
++ R + G + +IDTP L + V Q L+ L + VLL
Sbjct: 81 HMVTDRCQSESVSVRGKQVIVIDTPDLFSSLSCSEVRQQNLKQCLELLADDHC-VLLLVT 139
Query: 126 RLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGL-NY 172
+ Y + DR+ I+ + G G + +R ++V T D L NY
Sbjct: 140 PIGHYTEE--DRETIEGIWGKIGPKAYRHMIVVFTREDELDEDSLWNY 185
Score = 38.1 bits (87), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTP 93
L +L+MGK GVGKS+ NS++G++V + + + S S+ G + IID+P
Sbjct: 285 LRVLLMGKRGVGKSAAGNSILGKQVFKTQFSEKQRVTKAFASHSRVWQGKKVLIIDSP 342
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLN-----IIDT 92
L I+++G+ G GKS+T N+++G F +PV S G TL+ ++DT
Sbjct: 476 LNIILLGRSGAGKSATGNTILGRSAF----FSQLRAQPVTSSSQSGKRTLDWQDVVVVDT 531
Query: 93 PGLVEA 98
P ++
Sbjct: 532 PSFIQT 537
>sp|Q8K349|GIMA6_MOUSE GTPase IMAP family member 6 OS=Mus musculus GN=Gimap6 PE=2 SV=1
Length = 305
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKG-----GFTLNIID 91
L +L++GK G GKS+T NS++G + +F+S+ + RPV + KG G L +ID
Sbjct: 104 LQLLLVGKTGSGKSATGNSILGRQ-----AFESKISARPVTTTFQKGTREFEGKELEVID 158
Query: 92 TPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQI 151
TP + + I L + +L ++ Y + D+ + + + FG I
Sbjct: 159 TPDIFSPQNQPEATAKKICDLLASPGPHAVLLVIQVGRYTAE--DQAVARCLQEIFGNTI 216
Query: 152 WRKSLLVLTHAQ 163
++LV T +
Sbjct: 217 LAYTILVFTRKE 228
>sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1
Length = 219
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 7/134 (5%)
Query: 31 KQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLN 88
+ + + L I+++GK G GKSST NS++GE+V + ++++ V R G L
Sbjct: 24 QDQGIPQLRIVLLGKTGAGKSSTGNSILGEKVFN-SGICAKSITKVCEKRVSTWDGKELV 82
Query: 89 IIDTPGLVEAGYVNYQALELIKGF--LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGT 146
++DTPG+ + + I + L + LL L Y V+ + + + +
Sbjct: 83 VVDTPGIFDTEVPDADTQREITRYVALTSPGPHALLLVVPLGRYTVE--EHKATQKILDM 140
Query: 147 FGKQIWRKSLLVLT 160
FGKQ R +L+LT
Sbjct: 141 FGKQARRFMILLLT 154
>sp|Q5BJT6|LSG1_RAT Large subunit GTPase 1 homolog OS=Rattus norvegicus GN=Lsg1 PE=2
SV=1
Length = 655
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 20/105 (19%)
Query: 19 TQNKLIELLSKL---KQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS-------F 68
++ +L+EL KL K+ LT+ ++G VGKSST+N+++G + V+V++ F
Sbjct: 362 SKQELLELFKKLHTGKKVKDGQLTVGLVGYPNVGKSSTINTIMGNKKVSVSATPGHTKHF 421
Query: 69 QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113
Q+ + P L + D PGLV +V+ +A + G L
Sbjct: 422 QTLYVEP----------GLCLCDCPGLVMPSFVSTKAEMICSGIL 456
>sp|C7LZP1|ERA_ACIFD GTPase Era OS=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM
15462 / NBRC 103882 / ICP) GN=era PE=3 SV=1
Length = 287
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 98
+ V+G+ VGKSS VN++ GER V+ + R V V G L ++DTPG+ A
Sbjct: 15 VAVIGRTNVGKSSLVNALAGERATIVSRHPNTTRRSVRVISRVGDAELVLVDTPGIAAA 73
>sp|Q3UM18|LSG1_MOUSE Large subunit GTPase 1 homolog OS=Mus musculus GN=Lsg1 PE=2 SV=2
Length = 644
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 20/105 (19%)
Query: 19 TQNKLIELLSKL---KQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS-------F 68
++ +L+EL KL K+ LT+ ++G VGKSST+N+++G + V+V++ F
Sbjct: 351 SKQELLELFKKLHTGKKVKDGQLTVGLVGYPNVGKSSTINTIMGNKKVSVSATPGHTKHF 410
Query: 69 QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113
Q+ + P L + D PGLV +V+ +A + G L
Sbjct: 411 QTLYVEP----------GLCLCDCPGLVMPSFVSTKAEMICNGIL 445
>sp|A9B567|DER_HERA2 GTPase Der OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM
785) GN=der PE=3 SV=1
Length = 455
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 31 KQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNII 90
++E+ N+L I ++G+ VGKSS +N ++GE V V++ + + G + +I
Sbjct: 176 EEEDDNSLKIAIVGRPNVGKSSLLNKLVGEERVVVSNIPGTTRDSIDTKLTYKGIPITLI 235
Query: 91 DTPGL-----VEAGYVNYQALELIKGF 112
DT G+ +E G Y L +K
Sbjct: 236 DTAGIRRRGSIEQGIERYSVLRTMKAI 262
>sp|B0K8N3|DER_THEP3 GTPase Der OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=der PE=3 SV=1
Length = 439
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 23 LIELLSKLKQENVN----TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV 78
L E++ KL QE + T+ I V+GK VGKSS VN ++GE V V++ +
Sbjct: 158 LDEVVKKLPQEELEYTEETIKIAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDAIDT 217
Query: 79 SRSKGGFTLNIIDTPGL 95
SK G +IDT G+
Sbjct: 218 PFSKDGKNYVLIDTAGI 234
>sp|B1XLH8|DER_SYNP2 GTPase Der OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
PR-6) GN=der PE=3 SV=1
Length = 453
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 21 NKLIELLSKLKQ-ENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVS 79
+K+IE L + E T+ + ++G+ VGKSS +N++ GE+ V+ +
Sbjct: 159 DKVIEYLPTITDVEEDTTINVAIIGRPNVGKSSLLNALTGEQRAIVSPISGTTRDAIDTI 218
Query: 80 RSKGGFTLNIIDTPGLVEAGYVNYQA--LELIKGFLLNKTIDVLLYA-DRLDAYRVDDL 135
+ G +IDT G+ V+Y A + + F + DV+L+ D LD DL
Sbjct: 219 IERNGQQYRLIDTAGIRRKKNVDYGAEFFSINRAFKAIRRADVVLFVIDVLDGVTEQDL 277
>sp|B8CWY9|DER_HALOH GTPase Der OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM
9562) GN=der PE=3 SV=1
Length = 438
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95
+ + + ++GK VGKSS VN ++G+ V V+ + K G N+IDT GL
Sbjct: 176 DAIDVAIIGKPNVGKSSLVNYIVGQERVIVSDIPGTTRDAIDTLVEKNGHRYNLIDTAGL 235
Query: 96 VEAGYVN-----YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQI 139
+ V Y AL IK ++++ V++ D L+ V + D++I
Sbjct: 236 RKKSRVKEATEYYSALRTIKA--IDRSDGVIMMIDALEG--VTEQDKKI 280
>sp|Q46ZI7|DER_CUPPJ GTPase Der OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197)
GN=der PE=3 SV=1
Length = 447
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 29 KLKQENVNT---LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF 85
+L +E+ ++ + I ++G+ VGKS+ VN++IGE V + V +GG
Sbjct: 169 ELAEEDADSGKGVKIAIVGRPNVGKSTLVNTLIGEERVIAFDMPGTTRDAIYVEFERGGK 228
Query: 86 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118
+IDT GL G V E I+ F + KT+
Sbjct: 229 PYTLIDTAGLRRRGKV----FEAIEKFSVVKTL 257
>sp|B0K3E4|DER_THEPX GTPase Der OS=Thermoanaerobacter sp. (strain X514) GN=der PE=3 SV=1
Length = 439
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 23 LIELLSKLKQENVN----TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV 78
L E++ +L QE + T+ I V+GK VGKSS VN ++GE V V++ +
Sbjct: 158 LDEVVKRLPQEELEYTEETIKIAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDAIDT 217
Query: 79 SRSKGGFTLNIIDTPGL 95
SK G +IDT G+
Sbjct: 218 PFSKDGKNYVLIDTAGI 234
>sp|Q6KH82|MNME_MYCMO tRNA modification GTPase MnmE OS=Mycoplasma mobile (strain ATCC
43663 / 163K / NCTC 11711) GN=mnmE PE=3 SV=1
Length = 442
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95
N L I ++GK VGKSS +N+++ E V + + S GF +I DT GL
Sbjct: 214 NGLKIAIVGKPNVGKSSLLNALLNEERAIVTNEAGTTRDVIEASFQIDGFLFSISDTAGL 273
Query: 96 VEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQI-IKAVTGTFGKQIWRK 154
E N + L + K F + D++L+ + + +D D+QI IK+ + K + +K
Sbjct: 274 REVQN-NIENLGIQKTFETIEKSDIILHIIQPNEAE-NDFDKQIEIKSKNKIYLKILNKK 331
Query: 155 SLL 157
L+
Sbjct: 332 DLI 334
>sp|Q2YDM7|LSG1_BOVIN Large subunit GTPase 1 homolog OS=Bos taurus GN=LSG1 PE=2 SV=1
Length = 652
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 20/105 (19%)
Query: 19 TQNKLIELLSKL---KQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS-------F 68
++ +L+E+ +L K+ LT+ ++G VGKSST+N+++G + V+V++ F
Sbjct: 359 SKQELLEVFKQLHSGKKVKDGQLTVGLVGYPNVGKSSTINTILGNKKVSVSATPGHTKHF 418
Query: 69 QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113
Q+ + P L + D PGLV +V+ +A + G L
Sbjct: 419 QTLYVEP----------GLCLCDCPGLVMPSFVSTKAEMICSGIL 453
>sp|Q30TK8|DER_SULDN GTPase Der OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM
1251) GN=der PE=3 SV=1
Length = 494
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%)
Query: 27 LSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFT 86
+ + + + N + I ++G+ VGKSS +N+++GE V+S + P+ S
Sbjct: 224 IKEFDETDANHIKISIIGRTNVGKSSLLNALLGEERSVVSSVAGTTIDPIDESMEYKDKQ 283
Query: 87 LNIIDTPGLVEAGYV 101
L +DT GL G +
Sbjct: 284 LTFVDTAGLRRRGKI 298
>sp|Q1LLJ5|DER_RALME GTPase Der OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 /
DSM 2839) GN=der PE=3 SV=1
Length = 447
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVE 97
+ I ++G+ VGKS+ VN++IGE V + V +GG +IDT GL +
Sbjct: 181 VKIAIVGRPNVGKSTLVNTLIGEERVIAFDMPGTTRDAIYVEFERGGKPYTLIDTAGLRK 240
Query: 98 AGYVNYQALELIKGFLLNKTI 118
G V E I+ F + KT+
Sbjct: 241 RGKV----FEAIEKFSVVKTL 257
>sp|Q7NS92|DER_CHRVO GTPase Der OS=Chromobacterium violaceum (strain ATCC 12472 / DSM
30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)
GN=der PE=3 SV=1
Length = 469
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 22 KLIELL-----SKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV 76
+L+EL+ ++++E+ V+G+ VGKS+ VN+++GE V +
Sbjct: 154 ELMELVLEGFPDEVEEEDSRHPKFAVIGRPNVGKSTLVNAILGEERVIAFDQAGTTRDSI 213
Query: 77 MVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL 121
+ + G T IIDT G+ VN E+++ F + KT+ +
Sbjct: 214 YIDFEREGHTYTIIDTAGVRRRAKVN----EMLEKFSVIKTMKAI 254
>sp|B3R1J8|DER_CUPTR GTPase Der OS=Cupriavidus taiwanensis (strain R1 / LMG 19424)
GN=der PE=3 SV=1
Length = 447
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVE 97
+ I ++G+ VGKS+ VN++IGE V + V +GG +IDT GL
Sbjct: 181 VKIAIVGRPNVGKSTLVNTLIGEERVIAFDMPGTTRDAIYVEFERGGKPYTLIDTAGLRR 240
Query: 98 AGYVNYQALELIKGFLLNKTI 118
G V E I+ F + KT+
Sbjct: 241 RGKV----FEAIEKFSVVKTL 257
>sp|Q74JL6|DER_LACJO GTPase Der OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 /
NCC 533) GN=der PE=3 SV=1
Length = 435
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 25 ELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG 84
E K Q ++ V+G+ VGKSS VN+++GE+ V V++ + + + + G
Sbjct: 162 EFGDKANQHEDGSIRFSVIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDG 221
Query: 85 FTLNIIDTPGLVEAGYVNYQALE 107
I+DT G+ G V Y+ E
Sbjct: 222 QKYTIVDTAGIRRRGKV-YEKTE 243
>sp|B2SXS6|DER_BURPP GTPase Der OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN)
GN=der PE=3 SV=1
Length = 445
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 31 KQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNII 90
+++ + I ++G+ VGKS+ +N+++GE V + V +GG +I
Sbjct: 173 EEKQTRGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERGGKPYTLI 232
Query: 91 DTPGLVEAGYVNYQALELIKGFLLNKTI 118
DT GL G V E I+ F + KT+
Sbjct: 233 DTAGLRRRGKV----FEAIEKFSVVKTL 256
>sp|Q9H089|LSG1_HUMAN Large subunit GTPase 1 homolog OS=Homo sapiens GN=LSG1 PE=1 SV=2
Length = 658
Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 20/105 (19%)
Query: 19 TQNKLIELLSKL---KQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS-------F 68
++ +L+EL +L ++ LT+ ++G VGKSST+N+++G + V+V++ F
Sbjct: 365 SKQELLELFKELHTGRKVKDGQLTVGLVGYPNVGKSSTINTIMGNKKVSVSATPGHTKHF 424
Query: 69 QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113
Q+ + P L + D PGLV +V+ +A G L
Sbjct: 425 QTLYVEP----------GLCLCDCPGLVMPSFVSTKAEMTCSGIL 459
>sp|Q8K3L6|GIMA5_RAT GTPase IMAP family member 5 OS=Rattus norvegicus GN=Gimap5 PE=2
SV=1
Length = 326
Score = 39.7 bits (91), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 33 ENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-------GF 85
E+ L IL++GK G GKS+T NS++ +F+S LR V+R+ G
Sbjct: 40 EDSGLLRILLVGKSGCGKSATGNSILRR-----PAFESR-LRGQSVTRTSQAEMGTWEGR 93
Query: 86 TLNIIDTPGLVEAGYVNYQALELIKG--FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAV 143
+ ++DTP + E+ N + I + VLL +L Y V+D ++ V
Sbjct: 94 SFLVVDTPPIFESKIQNQDMDKDIGNCYLMCAPGPHVLLLVTQLGRYTVEDA--MAVRMV 151
Query: 144 TGTFGKQIWRKSLLVLTHAQ 163
FG + R +++ TH +
Sbjct: 152 KQIFGVGVMRYMIVLFTHKE 171
>sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1
Length = 300
Score = 39.7 bits (91), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVN-SFQSEALRPVMVSRSKGGFTLNIIDTPGL 95
+L I+++GK G GKS+T N+++GE + + Q+ SR G L ++DTPGL
Sbjct: 8 SLRIVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQKASREWQGRDLLVVDTPGL 67
Query: 96 VE 97
+
Sbjct: 68 FD 69
>sp|Q13X32|DER_BURXL GTPase Der OS=Burkholderia xenovorans (strain LB400) GN=der PE=3
SV=1
Length = 445
Score = 39.7 bits (91), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVE 97
+ I ++G+ VGKS+ +N+++GE V + V +GG +IDT GL
Sbjct: 180 VKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERGGKPYTLIDTAGLRR 239
Query: 98 AGYVNYQALELIKGFLLNKTI 118
G V E I+ F + KT+
Sbjct: 240 RGKV----FEAIEKFSVVKTL 256
>sp|A4J3P1|DER_DESRM GTPase Der OS=Desulfotomaculum reducens (strain MI-1) GN=der PE=3
SV=1
Length = 439
Score = 39.3 bits (90), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95
+T+ I V+G+ VGKSS VN+++GE V V++ + S K G ++DT G+
Sbjct: 173 DTIRIAVIGRPNVGKSSLVNTILGEERVIVSNIPGTTRDAIDSSFEKNGKNYVLVDTAGM 232
>sp|B1X0B0|DER_CYAA5 GTPase Der OS=Cyanothece sp. (strain ATCC 51142) GN=der PE=3 SV=1
Length = 452
Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVE 97
+ + ++G+ VGKSS +N+ +GE+ V+ + +G T +IDT G+
Sbjct: 177 INVSIIGRPNVGKSSLLNAFLGEQRAIVSPISGTTRDAIDTVVERGDNTYRLIDTAGIRR 236
Query: 98 AGYVNYQALELIKGFLLNKTIDVLLYAD 125
VNY A + F +N+ + AD
Sbjct: 237 KKNVNYGA----EFFSINRAFKAIRRAD 260
>sp|Q119L7|DER_TRIEI GTPase Der OS=Trichodesmium erythraeum (strain IMS101) GN=der PE=3
SV=1
Length = 453
Score = 38.9 bits (89), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95
N I ++G+ VGKSS +NS IGE+ V+ + + G T +IDT G+
Sbjct: 175 NQTKIAIVGRPNVGKSSLLNSFIGEKRAIVSPISGTTRDAIDTVVERNGKTYRLIDTAGI 234
Query: 96 VEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLD 136
+ V Y A + F +N+ + A+ + + +D LD
Sbjct: 235 RKKKNVEYGA----EFFGINRAFKAIRRAEVV-MFVIDALD 270
>sp|Q73AZ1|DER_BACC1 GTPase Der OS=Bacillus cereus (strain ATCC 10987) GN=der PE=3 SV=1
Length = 436
Score = 38.9 bits (89), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 5 LLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVT 64
LL E A Q FP ++ E +T+ ++G+ VGKSS VN+++G+ V
Sbjct: 155 LLDEAA--QHFPKIEEDGYDE----------DTIRFSLIGRPNVGKSSLVNALLGQERVI 202
Query: 65 VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 107
V++ V SK G IIDT G+ + G V Y++ E
Sbjct: 203 VSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGKV-YESTE 244
Score = 31.6 bits (70), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95
I ++G+ VGKS+ N ++GERV V + + NIIDT G+
Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGI 61
>sp|P74120|DER_SYNY3 GTPase Der OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=der
PE=3 SV=1
Length = 452
Score = 38.9 bits (89), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 21 NKLIELLSKLKQE-NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVS 79
+ L+E L ++E + + + ++G+ VGKSS +N++ GE+ V+ + +
Sbjct: 159 DALLEYLPAPQEEPEEDEIKVAIVGRPNVGKSSLLNALTGEQRAIVSPISGTTRDAIDMV 218
Query: 80 RSKGGFTLNIIDTPGLVEAGYVNYQA--LELIKGFLLNKTIDVLLYA-DRLDAYRVDDL 135
+ G +IDT G+ V+Y A + + F + DV+L+ D LD DL
Sbjct: 219 VERNGQKYRLIDTAGIRRKKNVDYGAEFFGINRAFKAIRRADVVLFVLDVLDGVTEQDL 277
>sp|Q6HL51|DER_BACHK GTPase Der OS=Bacillus thuringiensis subsp. konkukian (strain
97-27) GN=der PE=3 SV=1
Length = 436
Score = 38.9 bits (89), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 5 LLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVT 64
LL E A Q FP ++ E +T+ ++G+ VGKSS VN+++G+ V
Sbjct: 155 LLDEAA--QHFPKIEEDGYDE----------DTIRFSLIGRPNVGKSSLVNALLGQERVI 202
Query: 65 VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 107
V++ V SK G IIDT G+ + G V Y++ E
Sbjct: 203 VSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGKV-YESTE 244
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95
I ++G+ VGKS+ N ++GERV V + + NIIDT G+
Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGI 61
>sp|Q63DM8|DER_BACCZ GTPase Der OS=Bacillus cereus (strain ZK / E33L) GN=der PE=3 SV=1
Length = 436
Score = 38.9 bits (89), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 5 LLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVT 64
LL E A Q FP ++ E +T+ ++G+ VGKSS VN+++G+ V
Sbjct: 155 LLDEAA--QHFPKIEEDGYDE----------DTIRFSLIGRPNVGKSSLVNALLGQERVI 202
Query: 65 VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 107
V++ V SK G IIDT G+ + G V Y++ E
Sbjct: 203 VSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGKV-YESTE 244
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95
I ++G+ VGKS+ N ++GERV V + + NIIDT G+
Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGI 61
>sp|Q81FR5|DER_BACCR GTPase Der OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=der
PE=3 SV=1
Length = 436
Score = 38.9 bits (89), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 5 LLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVT 64
LL E A Q FP ++ E +T+ ++G+ VGKSS VN+++G+ V
Sbjct: 155 LLDEAA--QHFPKIEEDGYDE----------DTIRFSLIGRPNVGKSSLVNALLGQERVI 202
Query: 65 VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 107
V++ V SK G IIDT G+ + G V Y++ E
Sbjct: 203 VSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGKV-YESTE 244
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95
I ++G+ VGKS+ N ++GERV V + + NIIDT G+
Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGI 61
>sp|B9IVM6|DER_BACCQ GTPase Der OS=Bacillus cereus (strain Q1) GN=der PE=3 SV=1
Length = 436
Score = 38.9 bits (89), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 5 LLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVT 64
LL E A Q FP ++ E +T+ ++G+ VGKSS VN+++G+ V
Sbjct: 155 LLDEAA--QHFPKIEEDGYDE----------DTIRFSLIGRPNVGKSSLVNALLGQERVI 202
Query: 65 VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 107
V++ V SK G IIDT G+ + G V Y++ E
Sbjct: 203 VSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGKV-YESTE 244
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95
I ++G+ VGKS+ N ++GERV V + + NIIDT G+
Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGI 61
>sp|B7HL14|DER_BACC7 GTPase Der OS=Bacillus cereus (strain AH187) GN=der PE=3 SV=1
Length = 436
Score = 38.9 bits (89), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 5 LLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVT 64
LL E A Q FP ++ E +T+ ++G+ VGKSS VN+++G+ V
Sbjct: 155 LLDEAA--QHFPKIEEDGYDE----------DTIRFSLIGRPNVGKSSLVNALLGQERVI 202
Query: 65 VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 107
V++ V SK G IIDT G+ + G V Y++ E
Sbjct: 203 VSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGKV-YESTE 244
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95
I ++G+ VGKS+ N ++GERV V + + NIIDT G+
Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGI 61
>sp|B7HHQ7|DER_BACC4 GTPase Der OS=Bacillus cereus (strain B4264) GN=der PE=3 SV=1
Length = 436
Score = 38.9 bits (89), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 5 LLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVT 64
LL E A Q FP ++ E +T+ ++G+ VGKSS VN+++G+ V
Sbjct: 155 LLDEAA--QHFPKIEEDGYDE----------DTIRFSLIGRPNVGKSSLVNALLGQERVI 202
Query: 65 VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 107
V++ V SK G IIDT G+ + G V Y++ E
Sbjct: 203 VSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGKV-YESTE 244
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95
I ++G+ VGKS+ N ++GERV V + + NIIDT G+
Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGI 61
>sp|C1EN01|DER_BACC3 GTPase Der OS=Bacillus cereus (strain 03BB102) GN=der PE=3 SV=1
Length = 436
Score = 38.9 bits (89), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 5 LLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVT 64
LL E A Q FP ++ E +T+ ++G+ VGKSS VN+++G+ V
Sbjct: 155 LLDEAA--QHFPKIEEDGYDE----------DTIRFSLIGRPNVGKSSLVNALLGQERVI 202
Query: 65 VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 107
V++ V SK G IIDT G+ + G V Y++ E
Sbjct: 203 VSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGKV-YESTE 244
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95
I ++G+ VGKS+ N ++GERV V + + NIIDT G+
Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGI 61
>sp|B7JGY9|DER_BACC0 GTPase Der OS=Bacillus cereus (strain AH820) GN=der PE=3 SV=1
Length = 436
Score = 38.9 bits (89), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 5 LLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVT 64
LL E A Q FP ++ E +T+ ++G+ VGKSS VN+++G+ V
Sbjct: 155 LLDEAA--QHFPKIEEDGYDE----------DTIRFSLIGRPNVGKSSLVNALLGQERVI 202
Query: 65 VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 107
V++ V SK G IIDT G+ + G V Y++ E
Sbjct: 203 VSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGKV-YESTE 244
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95
I ++G+ VGKS+ N ++GERV V + + NIIDT G+
Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGI 61
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,551,444
Number of Sequences: 539616
Number of extensions: 4893755
Number of successful extensions: 18476
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 558
Number of HSP's that attempted gapping in prelim test: 17476
Number of HSP's gapped (non-prelim): 1438
length of query: 298
length of database: 191,569,459
effective HSP length: 117
effective length of query: 181
effective length of database: 128,434,387
effective search space: 23246624047
effective search space used: 23246624047
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)