Query 022358
Match_columns 298
No_of_seqs 263 out of 2662
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 02:55:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022358.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022358hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00991 3a0901s02IAP34 GTP-b 100.0 8.5E-63 1.8E-67 436.3 29.5 298 1-298 1-300 (313)
2 TIGR00993 3a0901s04IAP86 chlor 100.0 1.1E-42 2.4E-47 329.5 24.1 252 37-288 118-379 (763)
3 cd01853 Toc34_like Toc34-like 100.0 8.5E-40 1.8E-44 285.9 23.2 244 7-251 1-248 (249)
4 PF04548 AIG1: AIG1 family; I 100.0 6.7E-29 1.5E-33 213.2 14.6 179 38-220 1-198 (212)
5 cd01852 AIG1 AIG1 (avrRpt2-ind 99.9 4.2E-26 9.1E-31 193.6 18.4 151 38-192 1-154 (196)
6 COG3596 Predicted GTPase [Gene 99.9 1.6E-23 3.5E-28 180.1 14.8 220 9-252 11-231 (296)
7 COG1159 Era GTPase [General fu 99.8 2.2E-18 4.7E-23 150.5 16.5 123 36-166 5-128 (298)
8 PF01926 MMR_HSR1: 50S ribosom 99.8 1.7E-18 3.6E-23 134.4 14.1 114 39-161 1-116 (116)
9 PF02421 FeoB_N: Ferrous iron 99.8 1E-18 2.2E-23 141.7 12.7 122 38-169 1-122 (156)
10 COG1160 Predicted GTPases [Gen 99.8 2.9E-18 6.2E-23 157.5 15.9 119 38-165 4-125 (444)
11 COG1084 Predicted GTPase [Gene 99.8 3.6E-18 7.7E-23 150.4 13.4 134 22-165 153-293 (346)
12 COG1160 Predicted GTPases [Gen 99.8 9.8E-18 2.1E-22 154.0 13.6 126 36-168 177-305 (444)
13 cd04104 p47_IIGP_like p47 (47- 99.8 6.1E-18 1.3E-22 143.6 11.4 117 37-166 1-121 (197)
14 TIGR00436 era GTP-binding prot 99.7 5.4E-17 1.2E-21 144.4 16.2 118 39-165 2-120 (270)
15 COG0486 ThdF Predicted GTPase 99.7 6.9E-17 1.5E-21 148.8 14.9 124 35-167 215-339 (454)
16 cd01850 CDC_Septin CDC/Septin. 99.7 2.3E-16 4.9E-21 140.6 17.6 124 36-166 3-157 (276)
17 PF05049 IIGP: Interferon-indu 99.7 9.9E-18 2.1E-22 152.9 8.5 215 21-269 22-250 (376)
18 PRK00089 era GTPase Era; Revie 99.7 3.5E-16 7.6E-21 140.8 17.1 122 36-165 4-126 (292)
19 cd04163 Era Era subfamily. Er 99.7 6E-16 1.3E-20 126.0 16.8 122 36-165 2-124 (168)
20 PRK15494 era GTPase Era; Provi 99.7 6.9E-16 1.5E-20 141.4 18.3 123 35-165 50-173 (339)
21 PRK03003 GTP-binding protein D 99.7 8E-16 1.7E-20 147.1 18.9 124 36-165 210-335 (472)
22 cd01895 EngA2 EngA2 subfamily. 99.7 1.5E-15 3.3E-20 124.7 17.8 125 36-166 1-127 (174)
23 cd01894 EngA1 EngA1 subfamily. 99.7 2.7E-16 5.9E-21 127.4 12.4 117 41-165 1-118 (157)
24 KOG1547 Septin CDC10 and relat 99.7 4.9E-16 1.1E-20 131.0 13.5 125 35-165 44-197 (336)
25 COG0218 Predicted GTPase [Gene 99.7 1.9E-15 4.1E-20 125.4 16.5 121 36-166 23-149 (200)
26 cd04164 trmE TrmE (MnmE, ThdF, 99.7 1.3E-15 2.8E-20 123.3 15.2 119 38-166 2-121 (157)
27 TIGR03598 GTPase_YsxC ribosome 99.7 1.3E-15 2.9E-20 127.2 15.6 122 35-165 16-142 (179)
28 cd01898 Obg Obg subfamily. Th 99.7 4.4E-16 9.6E-21 128.2 12.3 124 39-165 2-127 (170)
29 PF00735 Septin: Septin; Inte 99.7 5.5E-16 1.2E-20 138.1 12.6 124 37-166 4-156 (281)
30 TIGR03156 GTP_HflX GTP-binding 99.7 1.7E-15 3.7E-20 139.2 16.0 124 36-165 188-314 (351)
31 cd01897 NOG NOG1 is a nucleola 99.7 1.6E-15 3.5E-20 124.7 14.3 122 38-165 1-126 (168)
32 PRK00093 GTP-binding protein D 99.7 4.8E-15 1E-19 140.6 19.3 124 36-165 172-297 (435)
33 PRK12298 obgE GTPase CgtA; Rev 99.7 2.4E-15 5.2E-20 139.8 16.5 124 39-165 161-288 (390)
34 TIGR03594 GTPase_EngA ribosome 99.7 6.5E-15 1.4E-19 139.4 19.6 124 36-165 171-296 (429)
35 TIGR00450 mnmE_trmE_thdF tRNA 99.7 3.9E-15 8.5E-20 140.6 17.4 122 35-165 201-323 (442)
36 PRK09518 bifunctional cytidyla 99.7 9.4E-15 2E-19 146.1 20.8 124 36-165 449-574 (712)
37 TIGR03594 GTPase_EngA ribosome 99.7 2.6E-15 5.6E-20 142.2 15.6 120 39-166 1-121 (429)
38 TIGR02729 Obg_CgtA Obg family 99.7 4.2E-15 9E-20 135.5 16.1 125 38-165 158-286 (329)
39 COG5019 CDC3 Septin family pro 99.6 3.5E-15 7.5E-20 133.6 15.0 128 34-167 20-177 (373)
40 PRK12297 obgE GTPase CgtA; Rev 99.6 8.8E-15 1.9E-19 136.9 17.8 123 39-164 160-286 (424)
41 cd01878 HflX HflX subfamily. 99.6 4.1E-15 8.9E-20 126.7 14.2 125 36-165 40-166 (204)
42 PRK05291 trmE tRNA modificatio 99.6 7.6E-15 1.6E-19 139.3 16.7 120 36-165 214-334 (449)
43 PRK12299 obgE GTPase CgtA; Rev 99.6 5.1E-15 1.1E-19 135.1 14.8 124 38-165 159-284 (335)
44 PRK00093 GTP-binding protein D 99.6 4.9E-15 1.1E-19 140.5 15.2 120 38-165 2-122 (435)
45 PRK03003 GTP-binding protein D 99.6 5.9E-15 1.3E-19 141.2 15.7 123 35-165 36-159 (472)
46 KOG2655 Septin family protein 99.6 3.1E-15 6.7E-20 134.9 12.6 143 10-166 2-172 (366)
47 PRK04213 GTP-binding protein; 99.6 5.4E-14 1.2E-18 119.4 17.5 120 36-165 8-143 (201)
48 cd01881 Obg_like The Obg-like 99.6 3.1E-15 6.7E-20 123.7 9.3 121 42-165 1-133 (176)
49 COG0370 FeoB Fe2+ transport sy 99.6 2.6E-14 5.6E-19 137.1 16.3 123 36-171 2-127 (653)
50 cd01879 FeoB Ferrous iron tran 99.6 1.5E-14 3.3E-19 117.4 12.6 115 42-166 1-115 (158)
51 KOG1490 GTP-binding protein CR 99.6 2.1E-15 4.5E-20 138.9 7.7 162 1-172 137-301 (620)
52 cd01861 Rab6 Rab6 subfamily. 99.6 8.2E-14 1.8E-18 113.6 16.1 115 38-165 1-118 (161)
53 cd04142 RRP22 RRP22 subfamily. 99.6 1.7E-13 3.7E-18 116.4 18.4 125 38-165 1-129 (198)
54 smart00175 RAB Rab subfamily o 99.6 2.2E-13 4.8E-18 111.2 18.1 117 38-166 1-119 (164)
55 cd04140 ARHI_like ARHI subfami 99.6 3.7E-14 7.9E-19 116.6 13.2 120 38-166 2-122 (165)
56 KOG1191 Mitochondrial GTPase [ 99.6 2.9E-14 6.2E-19 131.5 13.6 133 34-167 265-404 (531)
57 PRK11058 GTPase HflX; Provisio 99.6 3.4E-14 7.3E-19 133.6 14.2 122 38-165 198-322 (426)
58 cd00880 Era_like Era (E. coli 99.6 5E-14 1.1E-18 113.2 13.4 117 42-166 1-118 (163)
59 cd04171 SelB SelB subfamily. 99.6 9.3E-14 2E-18 113.3 14.6 114 38-165 1-117 (164)
60 PRK12296 obgE GTPase CgtA; Rev 99.6 5.5E-14 1.2E-18 133.4 14.6 125 38-165 160-297 (500)
61 PRK09518 bifunctional cytidyla 99.6 6.6E-14 1.4E-18 140.1 15.8 120 38-165 276-396 (712)
62 cd04119 RJL RJL (RabJ-Like) su 99.6 7.7E-14 1.7E-18 114.2 13.5 118 38-165 1-123 (168)
63 cd01864 Rab19 Rab19 subfamily. 99.6 2.5E-13 5.5E-18 111.5 16.1 118 37-166 3-122 (165)
64 cd00157 Rho Rho (Ras homology) 99.6 4E-14 8.6E-19 116.5 11.2 115 38-166 1-118 (171)
65 cd01860 Rab5_related Rab5-rela 99.5 7.1E-14 1.5E-18 114.2 12.4 119 37-166 1-120 (163)
66 PRK00454 engB GTP-binding prot 99.5 2.2E-13 4.8E-18 114.9 15.8 121 36-165 23-148 (196)
67 smart00173 RAS Ras subfamily o 99.5 2E-13 4.4E-18 111.7 14.9 116 38-165 1-118 (164)
68 cd01893 Miro1 Miro1 subfamily. 99.5 1.8E-13 3.8E-18 112.7 14.4 114 38-166 1-117 (166)
69 cd00154 Rab Rab family. Rab G 99.5 1.6E-13 3.5E-18 110.6 13.8 116 38-165 1-118 (159)
70 cd01866 Rab2 Rab2 subfamily. 99.5 2.1E-13 4.5E-18 112.5 14.5 118 37-166 4-123 (168)
71 PRK09554 feoB ferrous iron tra 99.5 2.6E-13 5.7E-18 135.8 17.8 121 36-165 2-125 (772)
72 cd01868 Rab11_like Rab11-like. 99.5 1.6E-13 3.4E-18 112.5 13.5 117 37-166 3-122 (165)
73 cd04136 Rap_like Rap-like subf 99.5 1.1E-13 2.5E-18 112.9 12.5 117 38-166 2-120 (163)
74 cd00881 GTP_translation_factor 99.5 3.3E-13 7.1E-18 112.7 15.5 113 39-166 1-128 (189)
75 cd04145 M_R_Ras_like M-Ras/R-R 99.5 1.8E-13 3.8E-18 111.9 13.2 117 37-165 2-120 (164)
76 cd04160 Arfrp1 Arfrp1 subfamil 99.5 1.2E-13 2.6E-18 113.4 12.3 115 39-165 1-120 (167)
77 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 1.7E-13 3.7E-18 112.4 13.2 111 39-165 2-115 (168)
78 cd01884 EF_Tu EF-Tu subfamily. 99.5 5.7E-13 1.2E-17 112.8 16.7 114 37-165 2-131 (195)
79 cd04138 H_N_K_Ras_like H-Ras/N 99.5 3.1E-13 6.7E-18 109.9 14.5 115 38-165 2-119 (162)
80 cd04113 Rab4 Rab4 subfamily. 99.5 1.9E-13 4.2E-18 111.5 13.3 117 38-166 1-119 (161)
81 cd01862 Rab7 Rab7 subfamily. 99.5 6.4E-13 1.4E-17 109.4 16.5 119 38-166 1-123 (172)
82 cd04154 Arl2 Arl2 subfamily. 99.5 9E-14 1.9E-18 115.2 11.3 123 26-165 4-128 (173)
83 cd01865 Rab3 Rab3 subfamily. 99.5 2.4E-13 5.2E-18 111.7 13.5 117 38-166 2-120 (165)
84 PF00009 GTP_EFTU: Elongation 99.5 6.6E-13 1.4E-17 111.8 16.4 115 36-165 2-135 (188)
85 cd04123 Rab21 Rab21 subfamily. 99.5 3.8E-13 8.2E-18 109.4 14.0 116 38-165 1-118 (162)
86 cd04107 Rab32_Rab38 Rab38/Rab3 99.5 1.1E-12 2.4E-17 111.5 17.3 117 38-165 1-123 (201)
87 cd04106 Rab23_lke Rab23-like s 99.5 6.6E-13 1.4E-17 108.3 15.2 116 38-166 1-120 (162)
88 KOG1423 Ras-like GTPase ERA [C 99.5 1.4E-13 3E-18 120.2 11.6 129 33-166 68-199 (379)
89 cd01867 Rab8_Rab10_Rab13_like 99.5 2.2E-13 4.8E-18 112.2 12.4 117 37-166 3-122 (167)
90 smart00178 SAR Sar1p-like memb 99.5 7.7E-13 1.7E-17 111.0 15.9 115 35-165 15-131 (184)
91 PLN03118 Rab family protein; P 99.5 2.7E-13 5.9E-18 116.2 13.3 119 36-166 13-134 (211)
92 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.5 8.7E-13 1.9E-17 108.3 15.6 116 38-166 3-121 (166)
93 cd04124 RabL2 RabL2 subfamily. 99.5 2E-13 4.3E-18 111.9 11.7 115 38-165 1-117 (161)
94 cd04176 Rap2 Rap2 subgroup. T 99.5 3.6E-13 7.7E-18 110.2 13.1 116 37-165 1-119 (163)
95 cd01891 TypA_BipA TypA (tyrosi 99.5 8.2E-13 1.8E-17 111.7 15.7 113 38-165 3-130 (194)
96 cd04112 Rab26 Rab26 subfamily. 99.5 7.9E-13 1.7E-17 111.5 15.5 116 38-165 1-119 (191)
97 cd01896 DRG The developmentall 99.5 4.6E-13 1E-17 116.6 14.2 87 39-128 2-88 (233)
98 cd01889 SelB_euk SelB subfamil 99.5 9.1E-13 2E-17 111.2 15.5 113 38-165 1-133 (192)
99 cd04175 Rap1 Rap1 subgroup. T 99.5 3E-13 6.5E-18 110.9 12.0 116 37-165 1-119 (164)
100 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.5 5.2E-13 1.1E-17 111.9 13.5 117 36-165 2-122 (183)
101 cd04122 Rab14 Rab14 subfamily. 99.5 3.7E-13 8E-18 110.7 12.3 116 38-166 3-121 (166)
102 cd00877 Ran Ran (Ras-related n 99.5 3.6E-13 7.8E-18 111.0 12.2 113 38-165 1-117 (166)
103 cd04118 Rab24 Rab24 subfamily. 99.5 2.7E-13 5.8E-18 114.4 11.6 115 38-165 1-118 (193)
104 smart00174 RHO Rho (Ras homolo 99.5 2E-13 4.3E-18 112.9 10.6 112 40-165 1-115 (174)
105 PRK09866 hypothetical protein; 99.5 2.9E-12 6.2E-17 122.9 19.7 73 85-165 230-302 (741)
106 cd01876 YihA_EngB The YihA (En 99.5 6.9E-13 1.5E-17 108.1 13.4 117 40-165 2-123 (170)
107 cd01874 Cdc42 Cdc42 subfamily. 99.5 5.3E-13 1.1E-17 111.1 12.9 114 38-165 2-118 (175)
108 cd04120 Rab12 Rab12 subfamily. 99.5 7.6E-13 1.7E-17 112.7 14.1 114 38-165 1-118 (202)
109 cd04125 RabA_like RabA-like su 99.5 3.8E-13 8.2E-18 113.0 11.9 115 38-165 1-118 (188)
110 cd04144 Ras2 Ras2 subfamily. 99.5 3.5E-13 7.6E-18 113.6 11.6 116 39-165 1-119 (190)
111 cd01890 LepA LepA subfamily. 99.5 1E-12 2.2E-17 109.2 14.3 112 39-165 2-132 (179)
112 PF00350 Dynamin_N: Dynamin fa 99.5 3E-13 6.5E-18 111.4 10.9 112 40-162 1-168 (168)
113 cd04134 Rho3 Rho3 subfamily. 99.5 3.3E-13 7.1E-18 113.7 11.2 114 38-165 1-117 (189)
114 PTZ00369 Ras-like protein; Pro 99.5 8.3E-13 1.8E-17 111.2 13.6 118 36-165 4-123 (189)
115 cd04149 Arf6 Arf6 subfamily. 99.5 3.2E-13 6.9E-18 111.6 10.8 113 36-165 8-123 (168)
116 CHL00071 tufA elongation facto 99.5 2.4E-12 5.3E-17 121.0 18.1 117 34-165 9-141 (409)
117 cd01863 Rab18 Rab18 subfamily. 99.5 6.2E-13 1.3E-17 108.5 12.4 117 38-165 1-119 (161)
118 cd04166 CysN_ATPS CysN_ATPS su 99.5 4.4E-13 9.6E-18 114.7 11.7 113 39-165 1-143 (208)
119 cd04109 Rab28 Rab28 subfamily. 99.5 1.1E-12 2.4E-17 112.8 14.2 117 38-165 1-122 (215)
120 cd04117 Rab15 Rab15 subfamily. 99.5 1.5E-12 3.1E-17 106.8 14.2 116 38-166 1-119 (161)
121 cd04158 ARD1 ARD1 subfamily. 99.5 6.3E-13 1.4E-17 109.8 12.1 112 39-165 1-113 (169)
122 cd04110 Rab35 Rab35 subfamily. 99.5 1.3E-12 2.9E-17 110.9 14.3 117 36-166 5-124 (199)
123 cd04155 Arl3 Arl3 subfamily. 99.5 1.7E-12 3.6E-17 107.3 14.5 124 26-165 4-128 (173)
124 cd04132 Rho4_like Rho4-like su 99.5 3.8E-13 8.3E-18 112.8 10.8 114 38-165 1-118 (187)
125 cd04135 Tc10 TC10 subfamily. 99.5 4.6E-13 9.9E-18 110.8 11.0 114 38-165 1-117 (174)
126 cd04131 Rnd Rnd subfamily. Th 99.5 5E-13 1.1E-17 111.6 11.2 114 38-165 2-118 (178)
127 cd04177 RSR1 RSR1 subgroup. R 99.5 1.3E-12 2.7E-17 107.8 13.5 118 37-166 1-120 (168)
128 cd04101 RabL4 RabL4 (Rab-like4 99.5 2.6E-12 5.6E-17 105.1 15.2 117 38-166 1-121 (164)
129 cd04157 Arl6 Arl6 subfamily. 99.5 5.6E-13 1.2E-17 108.7 11.1 115 39-165 1-117 (162)
130 cd04151 Arl1 Arl1 subfamily. 99.5 4.7E-13 1E-17 109.1 10.6 112 39-165 1-113 (158)
131 cd04146 RERG_RasL11_like RERG/ 99.5 7.6E-13 1.6E-17 108.6 11.8 116 39-165 1-119 (165)
132 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.5 1.4E-12 3E-17 108.2 13.4 116 37-165 2-120 (172)
133 TIGR00231 small_GTP small GTP- 99.5 1.7E-12 3.7E-17 104.2 13.4 117 37-165 1-121 (161)
134 cd00876 Ras Ras family. The R 99.5 7.8E-13 1.7E-17 107.3 11.5 116 39-166 1-118 (160)
135 smart00177 ARF ARF-like small 99.5 8.8E-13 1.9E-17 109.7 11.7 114 35-165 11-127 (175)
136 cd00878 Arf_Arl Arf (ADP-ribos 99.4 8.5E-13 1.8E-17 107.4 11.4 112 39-165 1-113 (158)
137 PF08477 Miro: Miro-like prote 99.4 2E-13 4.2E-18 105.9 7.1 115 39-163 1-119 (119)
138 cd04115 Rab33B_Rab33A Rab33B/R 99.4 2.7E-12 5.8E-17 106.0 14.4 119 37-165 2-122 (170)
139 cd04126 Rab20 Rab20 subfamily. 99.4 2.4E-12 5.1E-17 111.1 14.3 113 38-166 1-114 (220)
140 cd01875 RhoG RhoG subfamily. 99.4 7.7E-13 1.7E-17 111.7 11.1 116 36-165 2-120 (191)
141 cd00879 Sar1 Sar1 subfamily. 99.4 3.4E-12 7.4E-17 107.2 15.0 114 35-165 17-133 (190)
142 cd04108 Rab36_Rab34 Rab34/Rab3 99.4 1.7E-12 3.7E-17 107.5 12.9 114 39-165 2-119 (170)
143 cd04130 Wrch_1 Wrch-1 subfamil 99.4 1.3E-12 2.8E-17 108.3 12.1 114 38-165 1-117 (173)
144 cd04127 Rab27A Rab27a subfamil 99.4 4.8E-12 1E-16 105.2 15.6 118 37-166 4-134 (180)
145 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.4 1.1E-12 2.3E-17 109.0 11.6 115 36-165 14-129 (174)
146 cd04114 Rab30 Rab30 subfamily. 99.4 2.4E-12 5.3E-17 105.8 13.5 118 36-165 6-125 (169)
147 cd01871 Rac1_like Rac1-like su 99.4 1.1E-12 2.4E-17 109.1 11.4 114 38-165 2-118 (174)
148 cd04150 Arf1_5_like Arf1-Arf5- 99.4 9.7E-13 2.1E-17 107.7 10.9 113 38-165 1-114 (159)
149 cd04139 RalA_RalB RalA/RalB su 99.4 1.9E-12 4E-17 105.6 12.6 116 38-166 1-119 (164)
150 PLN03071 GTP-binding nuclear p 99.4 1.3E-12 2.8E-17 112.8 12.2 119 35-165 11-130 (219)
151 PTZ00133 ADP-ribosylation fact 99.4 1E-12 2.2E-17 110.1 11.1 114 35-165 15-131 (182)
152 PLN03110 Rab GTPase; Provision 99.4 6.5E-12 1.4E-16 108.1 16.3 118 36-165 11-130 (216)
153 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.4 1E-12 2.3E-17 110.1 11.0 116 36-165 4-122 (182)
154 cd04161 Arl2l1_Arl13_like Arl2 99.4 5.6E-12 1.2E-16 104.0 15.1 112 39-165 1-113 (167)
155 cd01870 RhoA_like RhoA-like su 99.4 1.2E-12 2.7E-17 108.2 11.2 114 38-165 2-118 (175)
156 cd04156 ARLTS1 ARLTS1 subfamil 99.4 1.1E-12 2.5E-17 106.8 10.6 112 39-165 1-114 (160)
157 cd04133 Rop_like Rop subfamily 99.4 2E-12 4.3E-17 107.8 12.2 114 38-165 2-118 (176)
158 cd04121 Rab40 Rab40 subfamily. 99.4 3.4E-12 7.4E-17 107.6 13.6 115 36-165 5-123 (189)
159 PLN00223 ADP-ribosylation fact 99.4 6.3E-12 1.4E-16 105.2 15.2 115 35-165 15-131 (181)
160 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.4 1.3E-12 2.8E-17 113.5 11.1 117 35-165 11-130 (232)
161 COG2262 HflX GTPases [General 99.4 4.3E-12 9.4E-17 115.4 14.8 125 36-165 191-317 (411)
162 cd04148 RGK RGK subfamily. Th 99.4 2.9E-12 6.3E-17 110.7 13.2 117 38-166 1-120 (221)
163 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.4 1.5E-12 3.2E-17 112.4 11.2 114 38-165 2-118 (222)
164 cd04143 Rhes_like Rhes_like su 99.4 2.4E-12 5.2E-17 113.0 12.7 117 38-166 1-127 (247)
165 cd04116 Rab9 Rab9 subfamily. 99.4 3.1E-12 6.8E-17 105.4 12.5 119 36-165 4-127 (170)
166 cd04159 Arl10_like Arl10-like 99.4 4.6E-12 1E-16 102.2 13.1 111 40-165 2-114 (159)
167 TIGR00437 feoB ferrous iron tr 99.4 5.3E-12 1.2E-16 123.5 15.6 112 44-165 1-112 (591)
168 cd04162 Arl9_Arfrp2_like Arl9/ 99.4 3.6E-12 7.8E-17 104.9 12.1 111 39-165 1-112 (164)
169 cd04137 RheB Rheb (Ras Homolog 99.4 2.9E-12 6.2E-17 106.7 11.4 116 38-165 2-119 (180)
170 cd01892 Miro2 Miro2 subfamily. 99.4 1.8E-11 3.8E-16 101.3 15.6 116 36-165 3-121 (169)
171 cd01886 EF-G Elongation factor 99.4 5E-12 1.1E-16 112.3 13.0 112 39-165 1-129 (270)
172 KOG0092 GTPase Rab5/YPT51 and 99.4 3.2E-12 6.8E-17 104.7 10.6 127 36-173 4-131 (200)
173 cd04147 Ras_dva Ras-dva subfam 99.4 4E-12 8.7E-17 107.8 11.7 116 39-166 1-118 (198)
174 PLN03108 Rab family protein; P 99.4 9.1E-12 2E-16 106.7 13.7 117 37-165 6-124 (210)
175 cd04168 TetM_like Tet(M)-like 99.4 6.1E-12 1.3E-16 109.8 12.6 112 39-165 1-129 (237)
176 cd04111 Rab39 Rab39 subfamily. 99.4 9.6E-12 2.1E-16 106.7 13.5 118 37-166 2-123 (211)
177 cd04105 SR_beta Signal recogni 99.4 1.3E-11 2.9E-16 105.2 14.2 115 39-166 2-123 (203)
178 smart00053 DYNc Dynamin, GTPas 99.4 1.8E-11 3.9E-16 106.4 15.1 123 36-166 25-206 (240)
179 PRK15467 ethanolamine utilizat 99.4 6.1E-12 1.3E-16 103.0 11.5 102 39-165 3-104 (158)
180 PLN03126 Elongation factor Tu; 99.4 6.2E-11 1.3E-15 113.1 19.5 138 34-190 78-230 (478)
181 KOG0084 GTPase Rab1/YPT1, smal 99.4 6E-12 1.3E-16 103.5 10.5 120 36-169 8-131 (205)
182 PLN03127 Elongation factor Tu; 99.4 6E-11 1.3E-15 112.5 18.8 117 34-165 58-190 (447)
183 cd04129 Rho2 Rho2 subfamily. 99.4 9E-12 2E-16 104.7 11.9 114 38-165 2-118 (187)
184 KOG1489 Predicted GTP-binding 99.4 3E-12 6.6E-17 112.4 9.0 121 38-165 197-325 (366)
185 PRK12736 elongation factor Tu; 99.4 5.3E-11 1.2E-15 111.5 17.9 117 34-165 9-141 (394)
186 cd04102 RabL3 RabL3 (Rab-like3 99.3 2E-11 4.4E-16 103.9 13.7 116 38-166 1-143 (202)
187 PRK12735 elongation factor Tu; 99.3 5.8E-11 1.3E-15 111.3 18.1 117 34-165 9-141 (396)
188 PRK05306 infB translation init 99.3 1.1E-11 2.3E-16 123.9 13.9 116 34-165 287-402 (787)
189 cd04128 Spg1 Spg1p. Spg1p (se 99.3 1.9E-11 4.2E-16 102.4 12.6 113 38-165 1-117 (182)
190 cd01888 eIF2_gamma eIF2-gamma 99.3 5.6E-11 1.2E-15 101.3 15.4 115 38-165 1-150 (203)
191 PRK12317 elongation factor 1-a 99.3 1.3E-11 2.8E-16 116.8 12.7 118 35-165 4-152 (425)
192 TIGR00475 selB selenocysteine- 99.3 1.1E-10 2.3E-15 114.3 18.8 114 38-165 1-116 (581)
193 PRK00049 elongation factor Tu; 99.3 8.1E-11 1.8E-15 110.3 17.3 117 34-165 9-141 (396)
194 TIGR02528 EutP ethanolamine ut 99.3 8.9E-12 1.9E-16 99.7 9.4 100 39-165 2-101 (142)
195 KOG0080 GTPase Rab18, small G 99.3 8.7E-12 1.9E-16 99.1 9.0 118 37-165 11-130 (209)
196 cd04170 EF-G_bact Elongation f 99.3 3.8E-11 8.3E-16 106.7 14.2 112 39-165 1-129 (268)
197 cd04169 RF3 RF3 subfamily. Pe 99.3 2.2E-11 4.7E-16 108.1 12.5 113 38-165 3-136 (267)
198 TIGR00487 IF-2 translation ini 99.3 2.1E-11 4.7E-16 118.8 13.5 115 35-165 85-200 (587)
199 cd00882 Ras_like_GTPase Ras-li 99.3 1.3E-11 2.7E-16 97.9 9.9 115 42-167 1-117 (157)
200 PF00071 Ras: Ras family; Int 99.3 1.6E-11 3.5E-16 100.2 10.5 115 39-166 1-118 (162)
201 COG0536 Obg Predicted GTPase [ 99.3 3.3E-11 7.1E-16 107.2 12.2 120 39-165 161-288 (369)
202 TIGR00485 EF-Tu translation el 99.3 1.9E-10 4.2E-15 107.7 17.7 117 35-165 10-141 (394)
203 PLN00023 GTP-binding protein; 99.3 7E-11 1.5E-15 106.2 13.9 120 35-166 19-165 (334)
204 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.3 5E-11 1.1E-15 97.9 11.7 126 36-171 21-147 (221)
205 TIGR02836 spore_IV_A stage IV 99.3 3.8E-11 8.2E-16 110.0 12.0 129 26-165 6-193 (492)
206 cd04167 Snu114p Snu114p subfam 99.3 6.6E-11 1.4E-15 101.6 13.0 112 39-165 2-136 (213)
207 COG1100 GTPase SAR1 and relate 99.3 1.2E-10 2.6E-15 100.0 14.3 119 37-166 5-125 (219)
208 PF00025 Arf: ADP-ribosylation 99.3 7.8E-11 1.7E-15 98.1 12.0 123 26-165 4-128 (175)
209 PTZ00132 GTP-binding nuclear p 99.3 3E-10 6.5E-15 97.6 16.0 120 34-165 6-126 (215)
210 PRK10218 GTP-binding protein; 99.3 1.6E-10 3.5E-15 112.9 16.0 113 38-165 6-133 (607)
211 cd01885 EF2 EF2 (for archaea a 99.3 1.4E-10 3.1E-15 100.1 13.8 112 39-165 2-138 (222)
212 CHL00189 infB translation init 99.2 1.3E-10 2.9E-15 115.2 14.3 115 35-165 242-360 (742)
213 TIGR01394 TypA_BipA GTP-bindin 99.2 2.4E-10 5.3E-15 111.7 15.7 112 39-165 3-129 (594)
214 cd01883 EF1_alpha Eukaryotic e 99.2 1.8E-10 3.8E-15 99.4 13.1 114 39-165 1-150 (219)
215 cd01858 NGP_1 NGP-1. Autoanti 99.2 4.3E-11 9.3E-16 97.8 8.8 57 36-95 101-157 (157)
216 KOG0073 GTP-binding ADP-ribosy 99.2 3E-10 6.6E-15 90.7 13.2 126 23-165 3-130 (185)
217 PF10662 PduV-EutP: Ethanolami 99.2 1.1E-10 2.3E-15 92.9 10.7 99 38-165 2-102 (143)
218 smart00176 RAN Ran (Ras-relate 99.2 8.6E-11 1.9E-15 99.9 10.3 107 43-165 1-112 (200)
219 PRK10512 selenocysteinyl-tRNA- 99.2 9E-10 2E-14 108.2 18.9 114 38-165 1-117 (614)
220 cd01873 RhoBTB RhoBTB subfamil 99.2 9.7E-11 2.1E-15 99.3 10.5 115 37-165 2-133 (195)
221 cd04103 Centaurin_gamma Centau 99.2 1.7E-10 3.6E-15 94.4 11.6 109 38-165 1-112 (158)
222 cd04165 GTPBP1_like GTPBP1-lik 99.2 2.9E-10 6.2E-15 98.4 13.6 114 39-165 1-151 (224)
223 TIGR00484 EF-G translation elo 99.2 1.4E-10 3.1E-15 115.9 13.0 113 38-165 11-140 (689)
224 TIGR00491 aIF-2 translation in 99.2 1.3E-10 2.7E-15 113.4 11.9 114 36-165 3-134 (590)
225 cd04178 Nucleostemin_like Nucl 99.2 7.5E-11 1.6E-15 97.8 8.9 57 36-95 116-172 (172)
226 KOG0095 GTPase Rab30, small G 99.2 5.8E-10 1.2E-14 87.7 13.2 114 38-165 8-125 (213)
227 TIGR00503 prfC peptide chain r 99.2 2E-10 4.4E-15 110.9 12.9 116 35-165 9-145 (527)
228 PTZ00258 GTP-binding protein; 99.2 1.3E-10 2.7E-15 107.6 10.8 91 34-127 18-125 (390)
229 cd01900 YchF YchF subfamily. 99.2 1.1E-10 2.3E-15 103.5 9.4 85 40-127 1-102 (274)
230 PRK05124 cysN sulfate adenylyl 99.2 3.5E-10 7.6E-15 108.1 13.5 118 34-165 24-173 (474)
231 PRK09601 GTP-binding protein Y 99.2 1.8E-10 4E-15 105.4 11.0 87 38-127 3-106 (364)
232 PRK12739 elongation factor G; 99.2 3.2E-10 7E-15 113.3 13.8 115 36-165 7-138 (691)
233 TIGR01393 lepA GTP-binding pro 99.2 4.8E-10 1E-14 109.8 14.4 113 38-165 4-135 (595)
234 PRK05506 bifunctional sulfate 99.2 2E-10 4.4E-15 113.8 12.0 118 34-165 21-170 (632)
235 TIGR00483 EF-1_alpha translati 99.2 4.1E-10 8.8E-15 106.7 13.5 118 35-165 5-154 (426)
236 KOG0078 GTP-binding protein SE 99.2 2.3E-10 4.9E-15 95.4 10.2 117 36-166 11-131 (207)
237 PRK00007 elongation factor G; 99.1 7.5E-10 1.6E-14 110.7 15.1 113 38-165 11-140 (693)
238 TIGR02034 CysN sulfate adenyly 99.1 3.4E-10 7.4E-15 106.4 11.9 114 38-165 1-146 (406)
239 KOG0098 GTPase Rab2, small G p 99.1 4.6E-10 1E-14 91.6 10.3 122 37-169 6-128 (216)
240 cd01849 YlqF_related_GTPase Yl 99.1 2.3E-10 4.9E-15 93.3 8.6 58 35-95 98-155 (155)
241 PF04670 Gtr1_RagA: Gtr1/RagA 99.1 8.5E-10 1.8E-14 95.4 12.2 121 39-165 1-124 (232)
242 PRK04004 translation initiatio 99.1 4.8E-10 1E-14 109.6 11.9 115 35-165 4-136 (586)
243 cd01855 YqeH YqeH. YqeH is an 99.1 5.9E-11 1.3E-15 100.0 4.8 74 19-95 109-190 (190)
244 cd01882 BMS1 Bms1. Bms1 is an 99.1 1.3E-09 2.7E-14 94.5 13.1 108 35-165 37-146 (225)
245 PRK09563 rbgA GTPase YlqF; Rev 99.1 4.3E-10 9.4E-15 100.9 10.5 66 36-104 120-185 (287)
246 KOG0395 Ras-related GTPase [Ge 99.1 5.4E-10 1.2E-14 94.6 10.3 121 36-169 2-125 (196)
247 PRK00741 prfC peptide chain re 99.1 8.7E-10 1.9E-14 106.5 13.0 115 36-165 9-144 (526)
248 KOG0087 GTPase Rab11/YPT3, sma 99.1 4.4E-10 9.6E-15 93.5 9.2 118 37-166 14-133 (222)
249 KOG3859 Septins (P-loop GTPase 99.1 4.4E-10 9.6E-15 97.2 9.3 163 9-190 22-209 (406)
250 PRK05433 GTP-binding protein L 99.1 1.4E-09 3E-14 106.7 14.1 113 38-165 8-139 (600)
251 TIGR03596 GTPase_YlqF ribosome 99.1 6.9E-10 1.5E-14 99.1 10.2 65 36-103 117-181 (276)
252 KOG1707 Predicted Ras related/ 99.1 1.1E-09 2.4E-14 103.3 11.8 123 34-167 6-130 (625)
253 PRK04000 translation initiatio 99.1 3.4E-09 7.5E-14 99.7 15.3 121 32-165 4-152 (411)
254 TIGR00490 aEF-2 translation el 99.1 1.9E-09 4.2E-14 108.2 14.1 116 35-165 17-151 (720)
255 PRK13351 elongation factor G; 99.1 1.1E-09 2.5E-14 109.5 12.5 115 36-165 7-138 (687)
256 PF09439 SRPRB: Signal recogni 99.1 4.2E-10 9.1E-15 93.4 7.8 117 37-166 3-126 (181)
257 PRK09435 membrane ATPase/prote 99.1 5.8E-09 1.3E-13 94.9 15.7 43 16-58 35-77 (332)
258 TIGR03680 eif2g_arch translati 99.1 4.7E-09 1E-13 98.8 15.3 118 35-165 2-147 (406)
259 COG1163 DRG Predicted GTPase [ 99.1 6.4E-10 1.4E-14 98.4 8.6 85 37-128 63-151 (365)
260 PTZ00141 elongation factor 1- 99.0 2.5E-09 5.5E-14 101.5 13.2 117 35-164 5-157 (446)
261 PTZ00416 elongation factor 2; 99.0 2.8E-09 6.1E-14 108.4 13.9 115 36-165 18-157 (836)
262 PF03193 DUF258: Protein of un 99.0 1.3E-10 2.9E-15 94.5 3.0 73 21-101 24-103 (161)
263 cd01899 Ygr210 Ygr210 subfamil 99.0 1.7E-09 3.7E-14 98.1 10.4 82 40-128 1-110 (318)
264 cd01856 YlqF YlqF. Proteins o 99.0 7.8E-10 1.7E-14 91.7 7.5 58 36-96 114-171 (171)
265 PRK09602 translation-associate 99.0 1.8E-09 3.9E-14 100.8 10.6 84 38-128 2-113 (396)
266 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 6.6E-10 1.4E-14 89.2 6.6 56 38-96 84-139 (141)
267 cd01851 GBP Guanylate-binding 99.0 1.4E-08 3E-13 87.9 15.2 122 36-164 6-146 (224)
268 COG2229 Predicted GTPase [Gene 99.0 1.6E-08 3.5E-13 82.6 14.3 131 35-190 8-149 (187)
269 COG1161 Predicted GTPases [Gen 99.0 1.9E-09 4.1E-14 98.2 9.6 88 12-102 105-194 (322)
270 KOG0394 Ras-related GTPase [Ge 99.0 1.9E-09 4E-14 87.9 8.3 120 36-165 8-131 (210)
271 KOG0079 GTP-binding protein H- 99.0 7.1E-09 1.5E-13 81.5 10.0 113 38-165 9-125 (198)
272 KOG0088 GTPase Rab21, small G 99.0 1.6E-09 3.4E-14 86.1 6.4 115 37-165 13-131 (218)
273 PRK12289 GTPase RsgA; Reviewed 98.9 9.6E-10 2.1E-14 100.9 5.5 72 21-100 161-239 (352)
274 KOG1145 Mitochondrial translat 98.9 3.3E-08 7.1E-13 92.9 15.0 114 34-164 150-265 (683)
275 PRK12288 GTPase RsgA; Reviewed 98.9 1.9E-09 4.2E-14 98.9 6.9 73 21-101 194-273 (347)
276 PRK07560 elongation factor EF- 98.9 2.6E-08 5.5E-13 100.4 15.3 115 36-165 19-152 (731)
277 PLN00116 translation elongatio 98.9 2E-08 4.3E-13 102.5 14.6 121 30-165 12-163 (843)
278 PLN00043 elongation factor 1-a 98.9 5.4E-08 1.2E-12 92.5 16.5 118 35-165 5-158 (447)
279 COG5256 TEF1 Translation elong 98.9 1.4E-08 3E-13 92.8 11.9 184 35-245 5-225 (428)
280 TIGR03597 GTPase_YqeH ribosome 98.9 3.9E-09 8.5E-14 97.7 8.4 104 19-126 137-246 (360)
281 KOG0093 GTPase Rab3, small G p 98.9 4E-08 8.6E-13 77.3 12.6 118 37-166 21-140 (193)
282 cd01859 MJ1464 MJ1464. This f 98.9 7.5E-09 1.6E-13 84.3 8.8 59 34-95 98-156 (156)
283 TIGR01425 SRP54_euk signal rec 98.9 8.1E-08 1.8E-12 90.0 16.2 119 36-165 99-252 (429)
284 TIGR00157 ribosome small subun 98.9 3.9E-09 8.4E-14 92.6 6.8 74 18-100 106-186 (245)
285 KOG0393 Ras-related small GTPa 98.9 3.5E-09 7.6E-14 88.5 5.3 116 36-165 3-122 (198)
286 KOG0448 Mitofusin 1 GTPase, in 98.8 3.8E-08 8.1E-13 94.6 12.4 118 35-166 107-275 (749)
287 COG1217 TypA Predicted membran 98.8 5.9E-08 1.3E-12 89.6 13.0 177 38-245 6-197 (603)
288 COG1162 Predicted GTPases [Gen 98.8 6.8E-09 1.5E-13 92.0 6.5 59 39-100 166-231 (301)
289 PTZ00327 eukaryotic translatio 98.8 1.4E-07 3E-12 89.7 15.4 118 35-165 32-184 (460)
290 KOG2486 Predicted GTPase [Gene 98.8 3.8E-08 8.3E-13 85.5 10.4 120 35-165 134-261 (320)
291 PRK12740 elongation factor G; 98.8 5.4E-08 1.2E-12 97.3 12.5 108 43-165 1-125 (668)
292 COG0532 InfB Translation initi 98.8 1.9E-07 4.1E-12 88.0 15.0 115 35-165 3-120 (509)
293 PRK13768 GTPase; Provisional 98.8 4.7E-08 1E-12 86.2 10.4 80 85-167 97-177 (253)
294 KOG0086 GTPase Rab4, small G p 98.8 2.5E-08 5.4E-13 78.9 7.4 125 37-172 9-134 (214)
295 PRK13796 GTPase YqeH; Provisio 98.8 1.8E-08 4E-13 93.4 7.8 73 21-97 145-222 (365)
296 COG4917 EutP Ethanolamine util 98.8 2.7E-08 5.8E-13 76.3 6.8 100 38-165 2-103 (148)
297 KOG3883 Ras family small GTPas 98.7 2.3E-07 4.9E-12 73.6 12.2 125 35-169 7-135 (198)
298 PRK00098 GTPase RsgA; Reviewed 98.7 3.2E-08 7E-13 89.3 7.9 72 20-99 152-230 (298)
299 KOG1954 Endocytosis/signaling 98.7 1.9E-07 4E-12 84.1 11.8 119 37-165 58-224 (532)
300 cd01854 YjeQ_engC YjeQ/EngC. 98.7 4.4E-08 9.6E-13 87.9 7.8 59 38-99 162-227 (287)
301 COG1703 ArgK Putative periplas 98.7 1.8E-07 4E-12 82.4 10.5 48 11-58 25-72 (323)
302 KOG0075 GTP-binding ADP-ribosy 98.7 5.8E-08 1.2E-12 76.4 6.6 114 36-165 19-135 (186)
303 KOG0410 Predicted GTP binding 98.7 8.5E-08 1.8E-12 85.0 8.3 129 34-165 175-307 (410)
304 COG0012 Predicted GTPase, prob 98.6 1.5E-07 3.2E-12 85.5 9.3 85 37-128 2-108 (372)
305 KOG1424 Predicted GTP-binding 98.6 7.9E-08 1.7E-12 89.8 6.6 63 37-102 314-376 (562)
306 KOG0091 GTPase Rab39, small G 98.6 1.3E-07 2.8E-12 75.7 6.9 128 37-173 8-137 (213)
307 KOG1486 GTP-binding protein DR 98.6 1.7E-07 3.7E-12 80.4 6.9 105 37-148 62-167 (364)
308 TIGR00092 GTP-binding protein 98.6 2.8E-07 6E-12 84.7 8.8 85 38-128 3-108 (368)
309 KOG0074 GTP-binding ADP-ribosy 98.5 1.2E-06 2.6E-11 68.7 10.5 127 23-165 3-132 (185)
310 PRK11889 flhF flagellar biosyn 98.5 3.2E-07 7E-12 84.5 8.6 120 36-166 240-391 (436)
311 PF00448 SRP54: SRP54-type pro 98.5 2.1E-07 4.6E-12 78.8 6.9 71 84-165 83-153 (196)
312 PF03308 ArgK: ArgK protein; 98.5 1.2E-06 2.5E-11 76.2 11.1 120 22-164 14-179 (266)
313 KOG0097 GTPase Rab14, small G 98.5 4.9E-07 1.1E-11 70.6 7.9 124 38-174 12-138 (215)
314 KOG0090 Signal recognition par 98.5 1.2E-06 2.7E-11 73.4 10.5 119 36-167 37-160 (238)
315 TIGR03348 VI_IcmF type VI secr 98.5 2.4E-06 5.3E-11 90.2 14.6 144 19-165 86-256 (1169)
316 KOG0070 GTP-binding ADP-ribosy 98.5 8.8E-07 1.9E-11 72.6 8.4 115 34-165 14-131 (181)
317 KOG0447 Dynamin-like GTP bindi 98.5 3E-06 6.4E-11 79.9 12.8 124 37-166 308-493 (980)
318 TIGR00064 ftsY signal recognit 98.4 9.4E-07 2E-11 78.6 9.2 73 83-166 153-231 (272)
319 KOG0462 Elongation factor-type 98.4 2E-06 4.3E-11 81.2 11.5 112 38-165 61-190 (650)
320 COG2895 CysN GTPases - Sulfate 98.4 4.9E-06 1.1E-10 74.8 13.1 124 34-172 3-159 (431)
321 KOG1491 Predicted GTP-binding 98.4 5.9E-07 1.3E-11 80.2 7.2 88 33-127 16-124 (391)
322 KOG0458 Elongation factor 1 al 98.4 2.7E-06 5.9E-11 80.8 11.9 153 35-206 175-363 (603)
323 COG0480 FusA Translation elong 98.4 2.2E-06 4.7E-11 85.0 11.7 115 36-165 9-141 (697)
324 KOG2485 Conserved ATP/GTP bind 98.4 9.6E-07 2.1E-11 78.1 8.2 71 35-105 141-216 (335)
325 TIGR00750 lao LAO/AO transport 98.4 2.2E-06 4.7E-11 77.5 10.7 37 23-59 20-56 (300)
326 KOG1532 GTPase XAB1, interacts 98.4 2E-06 4.4E-11 74.8 9.2 27 34-60 16-42 (366)
327 PRK14722 flhF flagellar biosyn 98.4 1.9E-06 4.1E-11 79.6 9.3 124 37-165 137-294 (374)
328 KOG4252 GTP-binding protein [S 98.4 1.4E-07 3.1E-12 76.6 1.6 118 36-166 19-138 (246)
329 PRK10416 signal recognition pa 98.4 5.9E-06 1.3E-10 75.1 12.3 119 36-165 113-272 (318)
330 PF03029 ATP_bind_1: Conserved 98.4 1.9E-07 4.2E-12 81.4 2.5 75 86-166 92-170 (238)
331 PRK14723 flhF flagellar biosyn 98.3 4.3E-06 9.4E-11 83.3 11.8 120 38-166 186-337 (767)
332 PRK14974 cell division protein 98.3 2.6E-06 5.6E-11 77.8 9.1 120 36-166 139-293 (336)
333 COG1419 FlhF Flagellar GTP-bin 98.3 3.3E-06 7.2E-11 77.8 9.6 116 37-166 203-352 (407)
334 KOG0071 GTP-binding ADP-ribosy 98.3 1.3E-05 2.7E-10 62.9 11.3 115 35-165 15-131 (180)
335 PRK14721 flhF flagellar biosyn 98.3 1.6E-06 3.6E-11 81.2 7.7 119 37-166 191-340 (420)
336 KOG0077 Vesicle coat complex C 98.3 2.9E-06 6.3E-11 68.3 7.8 113 36-165 19-134 (193)
337 KOG2484 GTPase [General functi 98.3 6E-07 1.3E-11 81.7 4.0 77 21-100 234-312 (435)
338 PRK12726 flagellar biosynthesi 98.3 2.6E-06 5.6E-11 78.4 7.5 118 37-165 206-355 (407)
339 KOG0461 Selenocysteine-specifi 98.2 3.8E-05 8.3E-10 68.9 14.1 116 36-167 6-137 (522)
340 KOG3886 GTP-binding protein [S 98.2 2.7E-06 5.8E-11 72.2 6.3 125 37-168 4-132 (295)
341 PRK00771 signal recognition pa 98.2 3.4E-06 7.3E-11 79.7 7.7 119 36-165 94-245 (437)
342 COG4108 PrfC Peptide chain rel 98.2 1.3E-05 2.7E-10 74.1 10.4 114 36-165 11-146 (528)
343 KOG2423 Nucleolar GTPase [Gene 98.2 1.4E-06 3E-11 79.2 3.5 74 22-99 293-366 (572)
344 KOG0083 GTPase Rab26/Rab37, sm 98.2 4.4E-07 9.6E-12 70.3 0.2 114 41-166 1-117 (192)
345 COG3523 IcmF Type VI protein s 98.2 7.2E-06 1.6E-10 84.9 8.9 151 13-165 92-269 (1188)
346 PRK12727 flagellar biosynthesi 98.1 1.2E-05 2.7E-10 76.9 9.6 23 37-59 350-372 (559)
347 PRK05703 flhF flagellar biosyn 98.1 8.2E-06 1.8E-10 77.1 8.1 21 38-58 222-242 (424)
348 COG5257 GCD11 Translation init 98.1 2.8E-05 6E-10 69.2 10.2 176 35-254 8-213 (415)
349 COG0050 TufB GTPases - transla 98.1 9.9E-05 2.2E-09 65.0 13.3 140 32-190 7-161 (394)
350 COG0481 LepA Membrane GTPase L 98.1 4.4E-05 9.4E-10 71.3 11.7 112 39-165 11-141 (603)
351 PRK10867 signal recognition pa 98.1 5.3E-05 1.1E-09 71.6 12.3 71 84-165 183-253 (433)
352 COG3276 SelB Selenocysteine-sp 98.1 0.00013 2.9E-09 67.6 14.5 113 39-165 2-116 (447)
353 PTZ00099 rab6; Provisional 98.1 3.1E-05 6.8E-10 64.4 9.6 70 84-165 28-98 (176)
354 PRK06731 flhF flagellar biosyn 98.1 2.5E-05 5.4E-10 69.3 9.3 118 38-166 76-225 (270)
355 PRK12723 flagellar biosynthesi 98.0 7.2E-05 1.6E-09 69.7 12.4 119 36-165 173-325 (388)
356 PRK14845 translation initiatio 98.0 3.6E-05 7.8E-10 79.5 11.1 102 48-165 472-591 (1049)
357 cd03112 CobW_like The function 98.0 2.3E-05 5E-10 64.0 7.7 22 39-60 2-23 (158)
358 PRK12724 flagellar biosynthesi 98.0 6.3E-06 1.4E-10 76.9 3.9 23 37-59 223-245 (432)
359 PRK06995 flhF flagellar biosyn 97.9 5.2E-05 1.1E-09 72.3 9.7 23 38-60 257-279 (484)
360 cd03115 SRP The signal recogni 97.9 0.0002 4.4E-09 59.1 12.1 71 84-165 82-152 (173)
361 TIGR00959 ffh signal recogniti 97.9 0.00013 2.9E-09 68.8 11.9 71 84-165 182-252 (428)
362 PRK01889 GTPase RsgA; Reviewed 97.9 1.3E-05 2.8E-10 74.1 4.8 72 21-99 183-261 (356)
363 KOG1144 Translation initiation 97.9 0.00014 3E-09 71.1 11.2 115 34-164 472-604 (1064)
364 KOG0076 GTP-binding ADP-ribosy 97.8 0.00018 3.9E-09 58.6 9.8 118 36-165 16-139 (197)
365 COG5192 BMS1 GTP-binding prote 97.8 5.8E-05 1.3E-09 71.7 7.7 111 32-165 64-176 (1077)
366 KOG0096 GTPase Ran/TC4/GSP1 (n 97.8 9.8E-05 2.1E-09 60.9 7.5 117 36-165 9-127 (216)
367 smart00275 G_alpha G protein a 97.8 0.00041 8.9E-09 63.9 12.5 78 79-165 178-264 (342)
368 COG0541 Ffh Signal recognition 97.8 6.1E-05 1.3E-09 69.8 6.6 136 18-164 77-251 (451)
369 KOG0468 U5 snRNP-specific prot 97.7 0.00036 7.7E-09 67.6 10.8 115 34-164 125-261 (971)
370 KOG0082 G-protein alpha subuni 97.6 0.0011 2.3E-08 60.6 11.9 81 76-165 186-275 (354)
371 COG0552 FtsY Signal recognitio 97.6 0.00023 5E-09 64.1 7.3 120 35-165 137-297 (340)
372 KOG0780 Signal recognition par 97.5 0.00039 8.5E-09 63.5 8.1 91 34-129 98-223 (483)
373 cd03114 ArgK-like The function 97.5 0.00081 1.8E-08 54.3 8.9 20 40-59 2-21 (148)
374 KOG0081 GTPase Rab27, small G 97.5 3.4E-05 7.3E-10 61.8 0.8 115 38-165 10-137 (219)
375 KOG0072 GTP-binding ADP-ribosy 97.5 0.00041 8.8E-09 54.8 6.7 125 24-164 6-131 (182)
376 KOG0781 Signal recognition par 97.5 0.00038 8.3E-09 65.1 7.6 78 82-165 464-543 (587)
377 COG5258 GTPBP1 GTPase [General 97.5 0.0006 1.3E-08 62.3 8.6 120 34-166 114-269 (527)
378 KOG1487 GTP-binding protein DR 97.4 0.00017 3.8E-09 62.5 4.7 104 38-148 60-164 (358)
379 PF05673 DUF815: Protein of un 97.4 0.002 4.4E-08 55.9 10.7 112 21-161 37-148 (249)
380 KOG0446 Vacuolar sorting prote 97.4 0.00017 3.6E-09 71.6 4.5 125 35-166 27-213 (657)
381 KOG1143 Predicted translation 97.3 0.00046 1E-08 62.7 6.1 118 37-169 167-320 (591)
382 KOG3887 Predicted small GTPase 97.3 0.0007 1.5E-08 58.2 6.3 122 37-166 27-149 (347)
383 PF00004 AAA: ATPase family as 97.2 0.0017 3.7E-08 50.5 7.6 101 40-163 1-111 (132)
384 KOG2749 mRNA cleavage and poly 97.2 0.0055 1.2E-07 55.6 11.0 27 34-60 100-126 (415)
385 PF06858 NOG1: Nucleolar GTP-b 97.1 0.0015 3.2E-08 43.4 5.3 45 116-163 12-58 (58)
386 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.1 0.0083 1.8E-07 48.1 10.9 24 38-61 27-50 (144)
387 PRK13900 type IV secretion sys 97.1 0.0025 5.4E-08 58.4 8.6 26 36-61 159-184 (332)
388 cd03222 ABC_RNaseL_inhibitor T 97.1 0.0061 1.3E-07 50.7 10.1 25 37-61 25-49 (177)
389 COG1341 Predicted GTPase or GT 97.0 0.0039 8.4E-08 57.6 9.0 26 34-59 70-95 (398)
390 KOG1534 Putative transcription 97.0 0.00054 1.2E-08 57.7 3.1 22 38-59 4-25 (273)
391 COG1618 Predicted nucleotide k 97.0 0.0086 1.9E-07 48.6 9.7 24 36-59 4-27 (179)
392 cd03110 Fer4_NifH_child This p 97.0 0.0099 2.1E-07 49.2 10.7 65 83-164 91-155 (179)
393 cd01983 Fer4_NifH The Fer4_Nif 97.0 0.012 2.6E-07 42.6 10.1 68 40-128 2-69 (99)
394 cd03230 ABC_DR_subfamily_A Thi 97.0 0.0088 1.9E-07 49.4 10.2 25 37-61 26-50 (173)
395 COG0194 Gmk Guanylate kinase [ 97.0 0.00038 8.3E-09 57.7 1.9 25 37-61 4-28 (191)
396 PF13555 AAA_29: P-loop contai 97.0 0.0008 1.7E-08 45.7 3.0 20 39-58 25-44 (62)
397 cd00009 AAA The AAA+ (ATPases 96.9 0.011 2.5E-07 46.0 10.0 26 36-61 18-43 (151)
398 PRK14737 gmk guanylate kinase; 96.9 0.00098 2.1E-08 56.0 3.9 26 36-61 3-28 (186)
399 cd02038 FleN-like FleN is a me 96.9 0.015 3.3E-07 46.2 10.7 99 41-164 4-109 (139)
400 PRK09270 nucleoside triphospha 96.9 0.0017 3.8E-08 56.2 5.6 41 21-61 17-57 (229)
401 TIGR03263 guanyl_kin guanylate 96.9 0.00057 1.2E-08 56.7 2.3 23 39-61 3-25 (180)
402 KOG1673 Ras GTPases [General f 96.9 0.0062 1.3E-07 48.9 8.0 117 36-165 19-137 (205)
403 KOG3905 Dynein light intermedi 96.9 0.0083 1.8E-07 53.9 9.6 38 25-62 36-77 (473)
404 PF09547 Spore_IV_A: Stage IV 96.9 0.011 2.4E-07 55.1 10.7 35 26-60 6-40 (492)
405 PF02263 GBP: Guanylate-bindin 96.9 0.0063 1.4E-07 53.9 8.9 69 30-98 14-87 (260)
406 cd01130 VirB11-like_ATPase Typ 96.9 0.0017 3.8E-08 54.3 5.1 26 36-61 24-49 (186)
407 KOG0467 Translation elongation 96.8 0.0032 6.8E-08 62.1 7.2 114 36-164 8-136 (887)
408 PRK13851 type IV secretion sys 96.8 0.0018 3.9E-08 59.6 5.2 26 36-61 161-186 (344)
409 PF00005 ABC_tran: ABC transpo 96.8 0.0011 2.3E-08 52.4 3.3 25 38-62 12-36 (137)
410 cd00071 GMPK Guanosine monopho 96.8 0.0012 2.6E-08 52.5 3.5 21 40-60 2-22 (137)
411 KOG0464 Elongation factor G [T 96.8 0.00094 2E-08 61.5 3.0 113 38-165 38-167 (753)
412 KOG1533 Predicted GTPase [Gene 96.8 0.0011 2.5E-08 56.7 3.4 20 39-58 4-23 (290)
413 PRK14738 gmk guanylate kinase; 96.8 0.0015 3.2E-08 55.8 3.9 26 35-60 11-36 (206)
414 PF13207 AAA_17: AAA domain; P 96.7 0.0013 2.8E-08 50.6 3.1 22 39-60 1-22 (121)
415 COG0378 HypB Ni2+-binding GTPa 96.7 0.0033 7.1E-08 52.5 5.4 25 36-60 11-36 (202)
416 KOG0460 Mitochondrial translat 96.7 0.017 3.8E-07 52.2 10.2 137 34-190 51-203 (449)
417 COG1116 TauB ABC-type nitrate/ 96.7 0.0014 3E-08 56.9 3.1 24 39-62 31-54 (248)
418 smart00010 small_GTPase Small 96.7 0.01 2.2E-07 45.4 7.8 24 38-61 1-24 (124)
419 PRK13695 putative NTPase; Prov 96.6 0.0092 2E-07 49.3 7.7 23 38-60 1-23 (174)
420 PRK11537 putative GTP-binding 96.6 0.0051 1.1E-07 56.0 6.6 22 39-60 6-27 (318)
421 COG1136 SalX ABC-type antimicr 96.6 0.0019 4E-08 55.7 3.5 24 39-62 33-56 (226)
422 KOG1707 Predicted Ras related/ 96.6 0.03 6.6E-07 53.9 11.8 113 36-164 424-538 (625)
423 PRK08472 fliI flagellum-specif 96.6 0.0012 2.5E-08 62.4 2.0 90 36-128 156-256 (434)
424 cd02042 ParA ParA and ParB of 96.6 0.032 7E-07 41.6 9.6 70 40-128 2-72 (104)
425 PRK00300 gmk guanylate kinase; 96.5 0.0025 5.5E-08 54.0 3.9 25 37-61 5-29 (205)
426 COG0488 Uup ATPase components 96.5 0.011 2.4E-07 57.4 8.7 27 36-62 347-373 (530)
427 cd03213 ABCG_EPDR ABCG transpo 96.5 0.033 7.2E-07 46.9 10.7 25 37-61 35-59 (194)
428 cd03111 CpaE_like This protein 96.5 0.045 9.8E-07 41.3 10.1 95 42-161 5-106 (106)
429 PF13191 AAA_16: AAA ATPase do 96.5 0.0027 5.9E-08 52.4 3.5 39 22-60 8-47 (185)
430 COG3840 ThiQ ABC-type thiamine 96.5 0.0023 5E-08 53.0 2.9 25 38-62 26-50 (231)
431 PRK13833 conjugal transfer pro 96.5 0.0042 9.2E-08 56.6 4.9 25 36-60 143-167 (323)
432 PRK07261 topology modulation p 96.4 0.0025 5.4E-08 52.7 3.1 23 38-60 1-23 (171)
433 COG4962 CpaF Flp pilus assembl 96.4 0.0054 1.2E-07 55.6 5.3 26 36-61 172-197 (355)
434 cd02036 MinD Bacterial cell di 96.4 0.047 1E-06 44.7 10.7 63 86-164 64-126 (179)
435 PRK08903 DnaA regulatory inact 96.4 0.0063 1.4E-07 52.5 5.5 52 9-60 14-65 (227)
436 cd03225 ABC_cobalt_CbiO_domain 96.4 0.003 6.5E-08 53.8 3.3 24 38-61 28-51 (211)
437 TIGR00150 HI0065_YjeE ATPase, 96.4 0.018 4E-07 45.5 7.4 26 35-60 20-45 (133)
438 TIGR02782 TrbB_P P-type conjug 96.3 0.0058 1.2E-07 55.2 5.1 25 36-60 131-155 (299)
439 cd03261 ABC_Org_Solvent_Resist 96.3 0.0032 6.8E-08 54.7 3.3 24 38-61 27-50 (235)
440 PRK08118 topology modulation p 96.3 0.0031 6.8E-08 51.9 3.1 23 38-60 2-24 (167)
441 cd01131 PilT Pilus retraction 96.3 0.0025 5.4E-08 54.0 2.6 22 40-61 4-25 (198)
442 cd03238 ABC_UvrA The excision 96.3 0.0032 7E-08 52.3 3.1 23 37-59 21-43 (176)
443 KOG0459 Polypeptide release fa 96.3 0.012 2.7E-07 54.2 6.9 142 35-190 77-253 (501)
444 COG0563 Adk Adenylate kinase a 96.3 0.0033 7.2E-08 52.4 3.1 23 38-60 1-23 (178)
445 TIGR02673 FtsE cell division A 96.3 0.0035 7.6E-08 53.5 3.3 24 38-61 29-52 (214)
446 PF13671 AAA_33: AAA domain; P 96.3 0.0033 7.1E-08 49.8 2.9 21 40-60 2-22 (143)
447 PRK05480 uridine/cytidine kina 96.3 0.0036 7.7E-08 53.3 3.3 25 36-60 5-29 (209)
448 cd03265 ABC_DrrA DrrA is the A 96.3 0.0037 8E-08 53.7 3.3 24 38-61 27-50 (220)
449 KOG2203 GTP-binding protein [G 96.3 0.01 2.2E-07 56.7 6.3 118 31-150 31-158 (772)
450 TIGR01166 cbiO cobalt transpor 96.3 0.0038 8.2E-08 52.3 3.3 24 38-61 19-42 (190)
451 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.3 0.0037 8E-08 53.5 3.3 24 38-61 31-54 (218)
452 PRK10078 ribose 1,5-bisphospho 96.3 0.0038 8.3E-08 52.2 3.3 23 39-61 4-26 (186)
453 PF04665 Pox_A32: Poxvirus A32 96.3 0.004 8.6E-08 54.2 3.4 25 36-60 12-36 (241)
454 TIGR00960 3a0501s02 Type II (G 96.3 0.0038 8.2E-08 53.4 3.3 24 38-61 30-53 (216)
455 cd03293 ABC_NrtD_SsuB_transpor 96.2 0.0038 8.3E-08 53.6 3.3 24 38-61 31-54 (220)
456 PF05621 TniB: Bacterial TniB 96.2 0.12 2.7E-06 46.3 12.8 114 34-162 58-190 (302)
457 PRK00411 cdc6 cell division co 96.2 0.06 1.3E-06 50.3 11.6 40 21-60 37-78 (394)
458 TIGR03608 L_ocin_972_ABC putat 96.2 0.004 8.7E-08 52.8 3.3 24 38-61 25-48 (206)
459 COG1126 GlnQ ABC-type polar am 96.2 0.005 1.1E-07 52.4 3.7 25 38-62 29-53 (240)
460 KOG0465 Mitochondrial elongati 96.2 0.0052 1.1E-07 59.3 4.2 114 38-166 40-170 (721)
461 cd03226 ABC_cobalt_CbiO_domain 96.2 0.0041 8.8E-08 52.8 3.3 24 38-61 27-50 (205)
462 cd03264 ABC_drug_resistance_li 96.2 0.0037 8E-08 53.3 3.0 23 39-61 27-49 (211)
463 cd03259 ABC_Carb_Solutes_like 96.2 0.0041 9E-08 53.0 3.3 24 38-61 27-50 (213)
464 cd02019 NK Nucleoside/nucleoti 96.2 0.0046 9.9E-08 43.0 2.9 21 40-60 2-22 (69)
465 cd03260 ABC_PstB_phosphate_tra 96.2 0.004 8.7E-08 53.7 3.2 24 38-61 27-50 (227)
466 cd00820 PEPCK_HprK Phosphoenol 96.2 0.0041 9E-08 47.2 2.8 21 38-58 16-36 (107)
467 PRK13894 conjugal transfer ATP 96.2 0.0069 1.5E-07 55.2 4.8 25 36-60 147-171 (319)
468 cd03292 ABC_FtsE_transporter F 96.2 0.0044 9.5E-08 52.9 3.3 24 38-61 28-51 (214)
469 COG1121 ZnuC ABC-type Mn/Zn tr 96.2 0.004 8.7E-08 54.5 3.1 23 38-60 31-53 (254)
470 TIGR00235 udk uridine kinase. 96.2 0.0042 9E-08 52.9 3.1 25 36-60 5-29 (207)
471 cd03216 ABC_Carb_Monos_I This 96.2 0.0048 1E-07 50.5 3.3 24 38-61 27-50 (163)
472 cd03224 ABC_TM1139_LivF_branch 96.2 0.0044 9.6E-08 53.1 3.3 24 38-61 27-50 (222)
473 TIGR02315 ABC_phnC phosphonate 96.2 0.0044 9.6E-08 54.0 3.3 24 38-61 29-52 (243)
474 cd03243 ABC_MutS_homologs The 96.2 0.023 4.9E-07 48.2 7.6 23 38-60 30-52 (202)
475 COG4148 ModC ABC-type molybdat 96.2 0.0067 1.5E-07 53.6 4.3 24 39-62 26-49 (352)
476 TIGR02322 phosphon_PhnN phosph 96.2 0.0038 8.3E-08 51.7 2.7 22 39-60 3-24 (179)
477 cd03269 ABC_putative_ATPase Th 96.1 0.0047 1E-07 52.6 3.3 24 38-61 27-50 (210)
478 cd03258 ABC_MetN_methionine_tr 96.1 0.0046 9.9E-08 53.6 3.3 26 37-62 31-56 (233)
479 cd03229 ABC_Class3 This class 96.1 0.0049 1.1E-07 51.1 3.3 24 38-61 27-50 (178)
480 COG1124 DppF ABC-type dipeptid 96.1 0.0085 1.8E-07 51.8 4.8 27 37-63 33-59 (252)
481 PF13238 AAA_18: AAA domain; P 96.1 0.0044 9.5E-08 47.9 2.9 21 40-60 1-21 (129)
482 cd03262 ABC_HisP_GlnQ_permease 96.1 0.0048 1E-07 52.6 3.3 24 38-61 27-50 (213)
483 PRK15177 Vi polysaccharide exp 96.1 0.0047 1E-07 52.9 3.3 24 38-61 14-37 (213)
484 TIGR02211 LolD_lipo_ex lipopro 96.1 0.0048 1E-07 53.0 3.3 24 38-61 32-55 (221)
485 TIGR02788 VirB11 P-type DNA tr 96.1 0.009 2E-07 54.2 5.2 26 36-61 143-168 (308)
486 COG3839 MalK ABC-type sugar tr 96.1 0.0043 9.3E-08 56.7 3.1 24 39-62 31-54 (338)
487 TIGR01189 ccmA heme ABC export 96.1 0.0051 1.1E-07 51.9 3.3 24 38-61 27-50 (198)
488 COG0523 Putative GTPases (G3E 96.1 0.023 4.9E-07 51.9 7.7 122 39-167 3-160 (323)
489 cd03263 ABC_subfamily_A The AB 96.1 0.005 1.1E-07 52.8 3.3 24 38-61 29-52 (220)
490 cd03218 ABC_YhbG The ABC trans 96.1 0.005 1.1E-07 53.2 3.3 24 38-61 27-50 (232)
491 cd03235 ABC_Metallic_Cations A 96.1 0.0049 1.1E-07 52.6 3.2 24 38-61 26-49 (213)
492 PF00437 T2SE: Type II/IV secr 96.1 0.0087 1.9E-07 53.1 4.9 37 21-60 114-150 (270)
493 PRK11248 tauB taurine transpor 96.1 0.005 1.1E-07 54.3 3.3 24 38-61 28-51 (255)
494 PRK11629 lolD lipoprotein tran 96.1 0.0052 1.1E-07 53.2 3.3 24 38-61 36-59 (233)
495 TIGR00101 ureG urease accessor 96.1 0.0047 1E-07 52.4 2.9 24 37-60 1-24 (199)
496 cd03256 ABC_PhnC_transporter A 96.1 0.0053 1.1E-07 53.4 3.3 24 38-61 28-51 (241)
497 PRK13541 cytochrome c biogenes 96.1 0.0055 1.2E-07 51.6 3.3 24 38-61 27-50 (195)
498 PRK13539 cytochrome c biogenes 96.1 0.0056 1.2E-07 52.1 3.3 26 37-62 28-53 (207)
499 cd03301 ABC_MalK_N The N-termi 96.0 0.0056 1.2E-07 52.2 3.3 24 38-61 27-50 (213)
500 cd03266 ABC_NatA_sodium_export 96.0 0.0055 1.2E-07 52.4 3.3 24 38-61 32-55 (218)
No 1
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=100.00 E-value=8.5e-63 Score=436.26 Aligned_cols=298 Identities=66% Similarity=1.071 Sum_probs=276.1
Q ss_pred Ccccc-cchhccccCCchhhHHHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE
Q 022358 1 MGSLL-LREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVS 79 (298)
Q Consensus 1 ~~~~~-~~~~~~~~~l~~~~~~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~ 79 (298)
||++. .+||.||+++|+++|+.+.++++++++++.+.++|+++|++|+||||++|+|+|.+++.++.+.+++..+....
T Consensus 1 ~~~~~~~~~w~g~~~~~~~tq~~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~ 80 (313)
T TIGR00991 1 MASPQTPREWVGIQQFPPATQTKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS 80 (313)
T ss_pred CCCcccCcceeccccCCHHHHHHHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE
Confidence 66654 59999999999999999999999999999999999999999999999999999999877777777776666666
Q ss_pred EEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEE
Q 022358 80 RSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL 159 (298)
Q Consensus 80 ~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~ 159 (298)
...+|.++.||||||+.+....++++.+.++.++...++|++|||+++|..++++.|.++++.+++.||+.+|.++|+|+
T Consensus 81 ~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVf 160 (313)
T TIGR00991 81 RTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVL 160 (313)
T ss_pred EEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEE
Confidence 77899999999999999877666677777777777779999999999998789999999999999999999999999999
Q ss_pred eCcCCCCCCCCChHHHhhhccHHHHHHHHhhcCCCcccccccCchHHhhhcCCccccCCCCcccCCCCCCchHHHHHHHH
Q 022358 160 THAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGIT 239 (298)
Q Consensus 160 tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~lp~~~~W~~~L~~~~~ 239 (298)
||+|..++++.++++|+.++++.++++|+++.+..+.+.+...+|++++||++.|.+|..++++||+++.|++.|++++.
T Consensus 161 Th~d~~~pd~~~~e~fv~~~~~~lq~~i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~ge~vlp~g~~w~~~l~~~~~ 240 (313)
T TIGR00991 161 THAQFSPPDGLEYNDFFSKRSEALLRVIHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEKILPDGTPWIPKLMKEIT 240 (313)
T ss_pred ECCccCCCCCCCHHHHHHhcHHHHHHHHHHHhcccccccccccCCEEEEecCCcccCCCCCCeECCCCCccHHHHHHHHH
Confidence 99999888999999999999999999999998888776666779999999999999999999999999999999999999
Q ss_pred HHHhcCCCcccchhhhccCCCCCCCccchhhHHHHHHHHH-HHHHHHHHHHhhhhcCCCC
Q 022358 240 DVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLI-LKWIEGAIKSDIAKDKKPY 298 (298)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 298 (298)
+.+.+..+++.+|+++++|++||.+++||+|+++++|||| ++||+++|++||+++++|.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (313)
T TIGR00991 241 EVISNGSKPIHVDKKLIDGPNPNNRGKMFIPLIFAVQYLLVVKPIRRAIHADIANEKKDA 300 (313)
T ss_pred HHHhCCCCCeEecHHHccCCCCCcccccHHHHHHHHHHHhhhHHHHHHHHHHHhhccCcc
Confidence 9999999999999999999999999999999999999999 8999999999999999873
No 2
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=100.00 E-value=1.1e-42 Score=329.45 Aligned_cols=252 Identities=32% Similarity=0.514 Sum_probs=219.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcC---cHHHHHHHHhhh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV---NYQALELIKGFL 113 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~---~~~~~~~i~~~~ 113 (298)
.++|+|+|+||+||||++|+|+|...+.++...++|+.+..+....+|..+.||||||+.++... ..++.+.+.+++
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~L 197 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFI 197 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHH
Confidence 36899999999999999999999988777776566666666666778999999999999986532 245666677777
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCCC-----CChHHHhhhccHHHHHHHH
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG-----LNYDVYCSKRSDALLKTIR 188 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~-----~~~~~~~~~~~~~l~~~i~ 188 (298)
...++|+||||++++..+.+..+..+++.|++.||+.+|.++|||+|++|..++++ .++++|+.++.+.+++.|+
T Consensus 198 sk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~rs~~Lq~~Ir 277 (763)
T TIGR00993 198 KKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQRSHIVQQAIG 277 (763)
T ss_pred hcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhhChHHHHHHHH
Confidence 66789999999999865566678899999999999999999999999999987654 6899999999999999999
Q ss_pred hhcCCCcccccccCchHHhhhcCCccccCCCCcccCCCCCCchHHHHHHHH-HHHhcCCCcccchhhhccCCCCCCCccc
Q 022358 189 LGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGIT-DVATNKSKSIVVDKKLIDGSGSDDKGKM 267 (298)
Q Consensus 189 ~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~lp~~~~W~~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (298)
+|.+......+...+|++++||++.|.+|..++++||+++.|++.|+..|. ..+..++.+++.++..++|++++..+++
T Consensus 278 q~~g~~~l~n~~~~~Pv~lvEN~~~C~~N~~gekVLPnG~~W~p~llllc~~~k~l~~a~~l~~~q~~~~~~~~~~~~~~ 357 (763)
T TIGR00993 278 QAVGDLRLMNPNLMNPVSLVENHPACRKNRAGQKVLPNGQVWKPHLLLLCYSSKILSEANALLKLQENIDGRRPFGFRSR 357 (763)
T ss_pred HhcCcceecccCCCCCEEEEecCCcccCCCCCceeCCCCchhHHHHHHHHHHhhhhccccccccccccccCCCccccccc
Confidence 998755544345568999999999999999999999999999999999999 8888999999999999999999999999
Q ss_pred hhhHHHHHHHHH-HHHHHHHHH
Q 022358 268 WIPAVIGLQWLI-LKWIEGAIK 288 (298)
Q Consensus 268 ~~p~~~~~~~~~-~~~~~~~~~ 288 (298)
|+||++++|+|| +|++.+.-.
T Consensus 358 ~~plp~~ls~ll~~r~~~k~~~ 379 (763)
T TIGR00993 358 APPLPYLLSWLLQSRAHPKLPE 379 (763)
T ss_pred CCchHHHHHHHhhcCCCCCChh
Confidence 999999999999 999765443
No 3
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=100.00 E-value=8.5e-40 Score=285.95 Aligned_cols=244 Identities=48% Similarity=0.706 Sum_probs=205.5
Q ss_pred chhccccCCchhhHHHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeE
Q 022358 7 REWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFT 86 (298)
Q Consensus 7 ~~~~~~~~l~~~~~~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~ 86 (298)
++|.|++.++.+++..+.++..++++....+++|+|+|++|+|||||+|+|+|...+.++.+.++|..+..+....+|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~ 80 (249)
T cd01853 1 REWTGFQFFPDAAQTKALELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFK 80 (249)
T ss_pred CCccccccCcHHHHHHHHHHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeE
Confidence 58999999999999999999999999999999999999999999999999999988788888888888888888889999
Q ss_pred EEEEeCCCCCCCC---cCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcC
Q 022358 87 LNIIDTPGLVEAG---YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (298)
Q Consensus 87 l~viDTPG~~~~~---~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 163 (298)
+.+|||||+.+.. ..++.+...+.+++...++|++|||+++|..+++..|..+++.+.+.||.++|.++++|+||+|
T Consensus 81 i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d 160 (249)
T cd01853 81 LNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAA 160 (249)
T ss_pred EEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCc
Confidence 9999999999873 2445566677777777789999999999988899999999999999999999999999999999
Q ss_pred CCCCCCCChHHHhhhccHHHHHHHHhh-cCCCcccccccCchHHhhhcCCccccCCCCcccCCCCCCchHHHHHHHHHHH
Q 022358 164 LCPPDGLNYDVYCSKRSDALLKTIRLG-AGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVA 242 (298)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~lp~~~~W~~~L~~~~~~~~ 242 (298)
..++++.....+..++....+..+.+. ..... ......+|+++++|++.|.+|..++++||+++.|++.|+..|....
T Consensus 161 ~~~p~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~pv~lven~~~c~~n~~~~~vlp~g~~w~~~~~~~~~~~~ 239 (249)
T cd01853 161 SSPPDGLNGTPFSYDRFVAQRSHIVQQAIQQAA-GDPRLENPVSLVENHPRCRKNREGEKVLPNGTVWKPQLLLLCYSVK 239 (249)
T ss_pred cCCCCCCCCCcchHHHHHHHHHHHHHHHhhhhc-cCccccCCEEEEeCCCcccCCCCCCeECCCCCccHHHHHHHHHHHH
Confidence 988887765555544444444444333 22222 1223459999999999999999999999999999999999999988
Q ss_pred hcCCCcccc
Q 022358 243 TNKSKSIVV 251 (298)
Q Consensus 243 ~~~~~~~~~ 251 (298)
....++.++
T Consensus 240 ~~~~~~~~~ 248 (249)
T cd01853 240 LLSEANILL 248 (249)
T ss_pred hcccccccc
Confidence 776655544
No 4
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.96 E-value=6.7e-29 Score=213.20 Aligned_cols=179 Identities=30% Similarity=0.429 Sum_probs=136.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhh--h
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVN-SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL--L 114 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~-~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~--~ 114 (298)
++|+|+|++|+||||++|+|+|...+..+ ...++|..+..+...++|+.++||||||+.++...++++.+.+.+++ +
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 68999999999999999999999986665 34567888888888999999999999999998887778888887765 4
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCCCCChHHHhhhc-cHHHHHHHHhhcC-
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKR-SDALLKTIRLGAG- 192 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~- 192 (298)
.+++|++|||++++ +++..+...++.+.+.||+++|+++|||+|++|...+. .+++|+++. +..+++++++|++
T Consensus 81 ~~g~ha~llVi~~~--r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~--~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 81 SPGPHAFLLVIPLG--RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDD--SLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp TT-ESEEEEEEETT--B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT--THHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCeEEEEEEecC--cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccc--cHHHHHhccCchhHhHHhhhcCCE
Confidence 58899999998877 89999999999999999999999999999999876333 489999854 3679999999864
Q ss_pred ---CCcc-------cccc----cCchHHhhhcCCccccCCCC
Q 022358 193 ---LGKH-------EFED----YAVPVALVENSGRCSKNEND 220 (298)
Q Consensus 193 ---~~~~-------~~~~----~~ip~~~~~~~~~~~~~~~~ 220 (298)
|... ..+. .+|+.++.+|++.||+++.+
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~ 198 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMF 198 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHH
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHH
Confidence 2222 0111 56777888888777776543
No 5
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.94 E-value=4.2e-26 Score=193.61 Aligned_cols=151 Identities=24% Similarity=0.339 Sum_probs=126.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccC-CCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhh--h
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNS-FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL--L 114 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~-~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~--~ 114 (298)
++|+++|++|+|||||+|+|+|...+..+. .++.|..+..+...+.|..+.||||||+.+.....+.....+.++. +
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 589999999999999999999998765443 4567888888888889999999999999987654445555555443 3
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCCCCChHHHhhhccHHHHHHHHhhcC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAG 192 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 192 (298)
.+++|++|||++++ +++..+..+++.+++.||+.+++++++|+|++|... +..+++|+......+++++++|++
T Consensus 81 ~~g~~~illVi~~~--~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~--~~~~~~~~~~~~~~l~~l~~~c~~ 154 (196)
T cd01852 81 APGPHAFLLVVPLG--RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLE--GGTLEDYLENSCEALKRLLEKCGG 154 (196)
T ss_pred CCCCEEEEEEEECC--CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccC--CCcHHHHHHhccHHHHHHHHHhCC
Confidence 47899999997766 488999999999999999999999999999999863 348899998877899999999853
No 6
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.91 E-value=1.6e-23 Score=180.10 Aligned_cols=220 Identities=23% Similarity=0.320 Sum_probs=157.3
Q ss_pred hccccCCchhhHHHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEE
Q 022358 9 WAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLN 88 (298)
Q Consensus 9 ~~~~~~l~~~~~~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~ 88 (298)
-.++...+.-.++.+.++.+.++-....+++|+++|.||+|||||||+||+.+...++..+.++...+.....+++..++
T Consensus 11 ~~~~~~~~~~~se~~l~~~~~~~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~ 90 (296)
T COG3596 11 LKGLLGLPSLLSERILEQLRMLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLV 90 (296)
T ss_pred hhhhccChHHHHHHHHHHhhhhhhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceE
Confidence 34566667777888888888888778899999999999999999999999887777776666666555556677888999
Q ss_pred EEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCC
Q 022358 89 IIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPD 168 (298)
Q Consensus 89 viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~ 168 (298)
+|||||++++...+.++...++..+ ++.|++|++++.++ +.-..|.++++.+.-.... +++++|+|++|...+-
T Consensus 91 lwDtPG~gdg~~~D~~~r~~~~d~l--~~~DLvL~l~~~~d-raL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p~ 164 (296)
T COG3596 91 LWDTPGLGDGKDKDAEHRQLYRDYL--PKLDLVLWLIKADD-RALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEPG 164 (296)
T ss_pred EecCCCcccchhhhHHHHHHHHHHh--hhccEEEEeccCCC-ccccCCHHHHHHHHHhccC---ceeEEEEehhhhhccc
Confidence 9999999999888888888888877 79999999988877 4334456666665555433 8999999999985331
Q ss_pred CCChHHHhhhccHHHHHHHHhhcCCCcccccccCchHHhhhcCCccccCCCCcccCCCCCCc-hHHHHHHHHHHHhcCCC
Q 022358 169 GLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAW-IPTLVKGITDVATNKSK 247 (298)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~lp~~~~W-~~~L~~~~~~~~~~~~~ 247 (298)
.+|+.--...+.+++++++..........+ ..-|+. +.. ...+| ++.|...+++.++.+++
T Consensus 165 -~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q-~V~pV~--------~~~--------~r~~wgl~~l~~ali~~lp~e~r 226 (296)
T COG3596 165 -REWDSAGHQPSPAIKQFIEEKAEALGRLFQ-EVKPVV--------AVS--------GRLPWGLKELVRALITALPVEAR 226 (296)
T ss_pred -cccccccCCCCHHHHHHHHHHHHHHHHHHh-hcCCeE--------Eec--------cccCccHHHHHHHHHHhCccccc
Confidence 233333333456777777543111000000 013332 221 12345 99999999999999988
Q ss_pred cccch
Q 022358 248 SIVVD 252 (298)
Q Consensus 248 ~~~~~ 252 (298)
.....
T Consensus 227 s~~a~ 231 (296)
T COG3596 227 SPLAA 231 (296)
T ss_pred chhhh
Confidence 76655
No 7
>COG1159 Era GTPase [General function prediction only]
Probab=99.80 E-value=2.2e-18 Score=150.49 Aligned_cols=123 Identities=18% Similarity=0.271 Sum_probs=99.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHH-HHHHHHhhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-ALELIKGFLL 114 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~-~~~~i~~~~~ 114 (298)
+.--|+++|+||+|||||+|+|+|..++.+++.+.+|+.........+..+++++||||+..+...-.+ +.+..+..+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl- 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL- 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh-
Confidence 446799999999999999999999999999999999998888888888889999999999987543322 223333322
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++|||++.+. .+...|..+++.++... .|+++++||.|...
T Consensus 84 -~dvDlilfvvd~~~-~~~~~d~~il~~lk~~~-----~pvil~iNKID~~~ 128 (298)
T COG1159 84 -KDVDLILFVVDADE-GWGPGDEFILEQLKKTK-----TPVILVVNKIDKVK 128 (298)
T ss_pred -ccCcEEEEEEeccc-cCCccHHHHHHHHhhcC-----CCeEEEEEccccCC
Confidence 79999999965553 37888888888888732 79999999999863
No 8
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.80 E-value=1.7e-18 Score=134.40 Aligned_cols=114 Identities=18% Similarity=0.386 Sum_probs=87.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHH--HHHHHHhhhhcC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ--ALELIKGFLLNK 116 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~--~~~~i~~~~~~~ 116 (298)
+|+|+|.+|+|||||+|+|++.....++..+++|.........+++..+.++||||+.+....... ....+.+.. .
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~--~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQI--S 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH--C
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHH--H
Confidence 689999999999999999999877788888888888866677889999999999999876543321 222222222 6
Q ss_pred CCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeC
Q 022358 117 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH 161 (298)
Q Consensus 117 ~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk 161 (298)
.+|+++||++.+. ..++.+.++++.++ . .+|+++|+||
T Consensus 79 ~~d~ii~vv~~~~-~~~~~~~~~~~~l~-~-----~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASN-PITEDDKNILRELK-N-----KKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTS-HSHHHHHHHHHHHH-T-----TSEEEEEEES
T ss_pred HCCEEEEEEECCC-CCCHHHHHHHHHHh-c-----CCCEEEEEcC
Confidence 8899999977554 34556677777774 1 2899999998
No 9
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.79 E-value=1e-18 Score=141.70 Aligned_cols=122 Identities=17% Similarity=0.294 Sum_probs=91.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 117 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~ 117 (298)
++|+++|.+|+|||||+|+|+|... .+++++++|.........+++..+.++||||+++......+ .+..+.++...+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~-~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e-e~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQ-KVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE-ERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSE-EEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH-HHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc-eecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH-HHHHHHHHhhcC
Confidence 4799999999999999999999994 78999999999999999999999999999999875433321 123344555689
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCCC
Q 022358 118 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 169 (298)
Q Consensus 118 ~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~ 169 (298)
+|++++| +|++++ +.+..++..+.+.. .|+++|+||+|+....+
T Consensus 79 ~D~ii~V--vDa~~l-~r~l~l~~ql~e~g-----~P~vvvlN~~D~a~~~g 122 (156)
T PF02421_consen 79 PDLIIVV--VDATNL-ERNLYLTLQLLELG-----IPVVVVLNKMDEAERKG 122 (156)
T ss_dssp SSEEEEE--EEGGGH-HHHHHHHHHHHHTT-----SSEEEEEETHHHHHHTT
T ss_pred CCEEEEE--CCCCCH-HHHHHHHHHHHHcC-----CCEEEEEeCHHHHHHcC
Confidence 9999999 665443 34456666676664 89999999999864343
No 10
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.79 E-value=2.9e-18 Score=157.46 Aligned_cols=119 Identities=21% Similarity=0.261 Sum_probs=98.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCC--cCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG--YVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~--~~~~~~~~~i~~~~~~ 115 (298)
..|+++|++|||||||+|+|+|.+.+.+++.+++|++......++.++.+.+|||+|+.+.+ .....+.+.... ..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~--Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALI--AI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHH--HH
Confidence 67999999999999999999999999999999999999999999999999999999997644 122222222222 23
Q ss_pred CCCCEEEEEEeCCCC-CCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAY-RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++||| +|.. .+++.|..+.+.|+.. ++|+++|+||+|..
T Consensus 82 ~eADvilfv--VD~~~Git~~D~~ia~~Lr~~-----~kpviLvvNK~D~~ 125 (444)
T COG1160 82 EEADVILFV--VDGREGITPADEEIAKILRRS-----KKPVILVVNKIDNL 125 (444)
T ss_pred HhCCEEEEE--EeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEEcccCc
Confidence 699999999 5553 4899999999998844 28999999999974
No 11
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=3.6e-18 Score=150.44 Aligned_cols=134 Identities=21% Similarity=0.266 Sum_probs=107.6
Q ss_pred HHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcC
Q 022358 22 KLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV 101 (298)
Q Consensus 22 ~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~ 101 (298)
+..+.+++|+..+.+-.+|+|.|.+|||||||++++++.+. .+.++|.+|+.....+.+.++.++.+|||||+.|-...
T Consensus 153 ~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ 231 (346)
T COG1084 153 KARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLE 231 (346)
T ss_pred HHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChH
Confidence 34556888888888899999999999999999999999987 88899999999999999999999999999999985432
Q ss_pred c-----HHHHHHHHhhhhcCCCCEEEEEEeCCCCC-CCHH-HHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 102 N-----YQALELIKGFLLNKTIDVLLYADRLDAYR-VDDL-DRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 102 ~-----~~~~~~i~~~~~~~~~d~vl~v~~~d~~~-~~~~-~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+ .+..-.++ .-.++|||+++.+... ++-+ +..+++.+...|. .|+++|+||+|..
T Consensus 232 ErN~IE~qAi~AL~-----hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~ 293 (346)
T COG1084 232 ERNEIERQAILALR-----HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIA 293 (346)
T ss_pred HhcHHHHHHHHHHH-----HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEeccccc
Confidence 2 12222222 3458999997776544 4443 4568899999985 6999999999985
No 12
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.76 E-value=9.8e-18 Score=153.98 Aligned_cols=126 Identities=23% Similarity=0.390 Sum_probs=104.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcH--HHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY--QALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~--~~~~~i~~~~ 113 (298)
.+++|+++|++++|||||+|+|+|++...+++.+++|+.......++++.++.++||.|+-......+ +.+...+...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 46999999999999999999999999999999999999999999999999999999999986554333 2233333333
Q ss_pred hcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCC
Q 022358 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPD 168 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~ 168 (298)
....+|++++| +|++. +++.|.++...+.+.. +++++|+||||+.+.+
T Consensus 257 aI~~a~vvllv--iDa~~~~~~qD~~ia~~i~~~g-----~~~vIvvNKWDl~~~~ 305 (444)
T COG1160 257 AIERADVVLLV--IDATEGISEQDLRIAGLIEEAG-----RGIVIVVNKWDLVEED 305 (444)
T ss_pred HHhhcCEEEEE--EECCCCchHHHHHHHHHHHHcC-----CCeEEEEEccccCCch
Confidence 34689999999 55544 8899999998888775 8999999999997543
No 13
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.76 E-value=6.1e-18 Score=143.64 Aligned_cols=117 Identities=21% Similarity=0.208 Sum_probs=80.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCC----CcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQ----SEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~----~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
+++|+++|.+|+|||||+|+|+|......+... .+|.....+.. ....++.+|||||+++.....+++++.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~--- 76 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEM--- 76 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHh---
Confidence 478999999999999999999996432211111 11222222211 1234789999999987655444444332
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
...++|+++++ .+ .+++..+..+++.+.+.. +++++|+||+|+..
T Consensus 77 -~~~~~d~~l~v--~~-~~~~~~d~~~~~~l~~~~-----~~~ilV~nK~D~~~ 121 (197)
T cd04104 77 -KFSEYDFFIII--SS-TRFSSNDVKLAKAIQCMG-----KKFYFVRTKVDRDL 121 (197)
T ss_pred -CccCcCEEEEE--eC-CCCCHHHHHHHHHHHHhC-----CCEEEEEecccchh
Confidence 22578999998 34 368899999999888762 78999999999853
No 14
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.74 E-value=5.4e-17 Score=144.44 Aligned_cols=118 Identities=16% Similarity=0.233 Sum_probs=83.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCc-HHHHHHHHhhhhcCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN-YQALELIKGFLLNKT 117 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~-~~~~~~i~~~~~~~~ 117 (298)
+|+++|.+|+|||||+|+|+|.....+++.+++|..........++.++.++||||+.+..... +.+.+.....+ ..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l--~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAI--GG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHH--hh
Confidence 6899999999999999999999987788888888765554445566789999999997653211 11222222222 68
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 118 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 118 ~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+|+++||++.+. ..+ .+..+++.+... ..|+++|+||+|+.
T Consensus 80 aDvvl~VvD~~~-~~~-~~~~i~~~l~~~-----~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 80 VDLILFVVDSDQ-WNG-DGEFVLTKLQNL-----KRPVVLTRNKLDNK 120 (270)
T ss_pred CCEEEEEEECCC-CCc-hHHHHHHHHHhc-----CCCEEEEEECeeCC
Confidence 999999966654 222 234445555442 27999999999985
No 15
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.73 E-value=6.9e-17 Score=148.82 Aligned_cols=124 Identities=23% Similarity=0.370 Sum_probs=96.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
.+.++++++|+||+|||||+|+|++++.+.|++.+++|++........+|.++.++||.|+.++...-+.. ..-+..-.
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~i-GIeRs~~~ 293 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERI-GIERAKKA 293 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHH-HHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999998765433321 11111112
Q ss_pred cCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCC
Q 022358 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 167 (298)
...+|+|||| +|.+. .+..+...+..+ .. .+|+++|.||+|+.+.
T Consensus 294 i~~ADlvL~v--~D~~~~~~~~d~~~~~~~----~~--~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 294 IEEADLVLFV--LDASQPLDKEDLALIELL----PK--KKPIIVVLNKADLVSK 339 (454)
T ss_pred HHhCCEEEEE--EeCCCCCchhhHHHHHhc----cc--CCCEEEEEechhcccc
Confidence 3699999999 55544 566677666611 12 2899999999999643
No 16
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.73 E-value=2.3e-16 Score=140.58 Aligned_cols=124 Identities=19% Similarity=0.319 Sum_probs=84.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCC-------CCcce--eEEEEEEEECC--eEEEEEeCCCCCCCCcCcHH
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSF-------QSEAL--RPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQ 104 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~-------~~~t~--~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~ 104 (298)
-.++|+|+|.+|+|||||+|+|++......... ...|. .......+.+| .++++|||||+++..... .
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~-~ 81 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNS-D 81 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccch-h
Confidence 468999999999999999999999876543321 12222 22233344556 468999999998754221 1
Q ss_pred HHHHHH--------------------hhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCC
Q 022358 105 ALELIK--------------------GFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (298)
Q Consensus 105 ~~~~i~--------------------~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 164 (298)
..+.+. ....+.++|+++|+++.+...+.+.|.++++.+.+. .|+++|+||+|+
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~~------v~vi~VinK~D~ 155 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSKR------VNIIPVIAKADT 155 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhcc------CCEEEEEECCCc
Confidence 111111 112245789999997766555888888888888752 799999999998
Q ss_pred CC
Q 022358 165 CP 166 (298)
Q Consensus 165 ~~ 166 (298)
..
T Consensus 156 l~ 157 (276)
T cd01850 156 LT 157 (276)
T ss_pred CC
Confidence 63
No 17
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.72 E-value=9.9e-18 Score=152.91 Aligned_cols=215 Identities=19% Similarity=0.204 Sum_probs=117.4
Q ss_pred HHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCC-----cccccCCCCcceeEEEEEEEECCeEEEEEeCCCC
Q 022358 21 NKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGER-----VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95 (298)
Q Consensus 21 ~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~-----~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~ 95 (298)
..+.+.++.+.. .+++|+|+|.+|+|||||||+|.|-. .+.++. ..+|..+..|... .-.++++||.||.
T Consensus 22 s~i~~~l~~~~~---~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv-~etT~~~~~Y~~p-~~pnv~lWDlPG~ 96 (376)
T PF05049_consen 22 SKIREALKDIDN---APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGV-VETTMEPTPYPHP-KFPNVTLWDLPGI 96 (376)
T ss_dssp HHHHHHHHHHHH-----EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSS-HSCCTS-EEEE-S-S-TTEEEEEE--G
T ss_pred HHHHHHHHHhhc---CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCC-CcCCCCCeeCCCC-CCCCCeEEeCCCC
Confidence 344455555544 78999999999999999999998742 222222 2345566666643 2237999999999
Q ss_pred CCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCC--CCCCCCChH
Q 022358 96 VEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL--CPPDGLNYD 173 (298)
Q Consensus 96 ~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~--~~~~~~~~~ 173 (298)
+......+++++.+.- ...|+++++ .+ .+++..+..+.+.++++. +++.+|-||+|. .........
T Consensus 97 gt~~f~~~~Yl~~~~~----~~yD~fiii--~s-~rf~~ndv~La~~i~~~g-----K~fyfVRTKvD~Dl~~~~~~~p~ 164 (376)
T PF05049_consen 97 GTPNFPPEEYLKEVKF----YRYDFFIII--SS-ERFTENDVQLAKEIQRMG-----KKFYFVRTKVDSDLYNERRRKPR 164 (376)
T ss_dssp GGSS--HHHHHHHTTG----GG-SEEEEE--ES-SS--HHHHHHHHHHHHTT------EEEEEE--HHHHHHHHHCC-ST
T ss_pred CCCCCCHHHHHHHccc----cccCEEEEE--eC-CCCchhhHHHHHHHHHcC-----CcEEEEEecccccHhhhhccCCc
Confidence 9888777778776632 578988887 33 489999999999999885 899999999975 211111111
Q ss_pred HHhhhccHHHHHHHHhhcC-CCcccccccCchHHhhhcCCccccCCCCcccCCCCCCchHHHHHHHHHHHhcCCCcccch
Q 022358 174 VYCSKRSDALLKTIRLGAG-LGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKSKSIVVD 252 (298)
Q Consensus 174 ~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~lp~~~~W~~~L~~~~~~~~~~~~~~~~~~ 252 (298)
.|.+ .+.+++.-+.|.. +.+. .....++.++++.... .-+ ++.|.+++...++..+++.+..
T Consensus 165 ~f~~--e~~L~~IR~~c~~~L~k~--gv~~P~VFLVS~~dl~-----------~yD--Fp~L~~tL~~dLp~~Kr~~fll 227 (376)
T PF05049_consen 165 TFNE--EKLLQEIRENCLENLQKA--GVSEPQVFLVSSFDLS-----------KYD--FPKLEETLEKDLPAHKRHAFLL 227 (376)
T ss_dssp T--H--HTHHHHHHHHHHHHHHCT--T-SS--EEEB-TTTTT-----------STT--HHHHHHHHHHHS-GGGHHHHHH
T ss_pred ccCH--HHHHHHHHHHHHHHHHHc--CCCcCceEEEeCCCcc-----------cCC--hHHHHHHHHHHhHHHHHHHHHH
Confidence 1111 1122222222311 1111 1122455555443211 112 9999999999999988866554
Q ss_pred ------hhhccCCCCCCCccchh
Q 022358 253 ------KKLIDGSGSDDKGKMWI 269 (298)
Q Consensus 253 ------~~~~~~~~~~~~~~~~~ 269 (298)
.+.++....+-+.++|+
T Consensus 228 sLp~is~~~I~kKk~~lk~~Iw~ 250 (376)
T PF05049_consen 228 SLPNISEAAIEKKKESLKQKIWL 250 (376)
T ss_dssp HS---SHHHHHHHHHHHHHHHHH
T ss_pred HhHHhhHHHHHHHHHHHHHHHHH
Confidence 33444444455555554
No 18
>PRK00089 era GTPase Era; Reviewed
Probab=99.71 E-value=3.5e-16 Score=140.76 Aligned_cols=122 Identities=18% Similarity=0.283 Sum_probs=87.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHH-HHHHHHhhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-ALELIKGFLL 114 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~-~~~~i~~~~~ 114 (298)
+...|+++|.+|||||||+|+|+|...+.++..+.+|..........++.+++++||||+.+....-.+ +.......
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~-- 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS-- 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHH--
Confidence 456799999999999999999999998777777766665544444445679999999999765422111 12222222
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
...+|+++||++.+. .++..+..+++.+... ..|+++|+||+|+.
T Consensus 82 ~~~~D~il~vvd~~~-~~~~~~~~i~~~l~~~-----~~pvilVlNKiDl~ 126 (292)
T PRK00089 82 LKDVDLVLFVVDADE-KIGPGDEFILEKLKKV-----KTPVILVLNKIDLV 126 (292)
T ss_pred HhcCCEEEEEEeCCC-CCChhHHHHHHHHhhc-----CCCEEEEEECCcCC
Confidence 268999999977664 4666666666666532 27999999999985
No 19
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.71 E-value=6e-16 Score=125.97 Aligned_cols=122 Identities=17% Similarity=0.265 Sum_probs=85.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHH-HHHhhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE-LIKGFLL 114 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~-~i~~~~~ 114 (298)
+.++|+++|.+|+|||||+|+++|...+..+....++...........+..+.+|||||+.+......+... .... .
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~--~ 79 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWS--A 79 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHH--H
Confidence 468999999999999999999999987666555555554444444556678999999999765433222211 1111 2
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
...+|++++|++.... .+..+..+...+... ..|+++|+||+|+.
T Consensus 80 ~~~~d~i~~v~d~~~~-~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~ 124 (168)
T cd04163 80 LKDVDLVLFVVDASEP-IGEGDEFILELLKKS-----KTPVILVLNKIDLV 124 (168)
T ss_pred HHhCCEEEEEEECCCc-cCchHHHHHHHHHHh-----CCCEEEEEEchhcc
Confidence 2689999999776642 455555666666554 27999999999984
No 20
>PRK15494 era GTPase Era; Provisional
Probab=99.71 E-value=6.9e-16 Score=141.42 Aligned_cols=123 Identities=18% Similarity=0.255 Sum_probs=88.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCc-CcHHHHHHHHhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-VNYQALELIKGFL 113 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~-~~~~~~~~i~~~~ 113 (298)
....+|+++|.+|+|||||+|+|+|.....+++.+.+|..........++.++.+|||||+.+... ....+.+.....+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 355799999999999999999999998776666666776655556677888999999999965332 2222222222222
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|+++||++... .+...+..+++.+.... .|.++|+||+|+.
T Consensus 130 --~~aDvil~VvD~~~-s~~~~~~~il~~l~~~~-----~p~IlViNKiDl~ 173 (339)
T PRK15494 130 --HSADLVLLIIDSLK-SFDDITHNILDKLRSLN-----IVPIFLLNKIDIE 173 (339)
T ss_pred --hhCCEEEEEEECCC-CCCHHHHHHHHHHHhcC-----CCEEEEEEhhcCc
Confidence 68999999965332 36666666666665431 5778999999984
No 21
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=8e-16 Score=147.14 Aligned_cols=124 Identities=21% Similarity=0.270 Sum_probs=92.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcC--cHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV--NYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~--~~~~~~~i~~~~ 113 (298)
..++|+++|.+|+|||||+|+|++.....++..+++|.........+++..+.+|||||+...... ..+.+..++...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 468999999999999999999999986667777888877776677788999999999998643221 123333333222
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
....+|++++|++.+. ..+..+..++..+... .+|+++|+||+|+.
T Consensus 290 ~i~~ad~vilV~Da~~-~~s~~~~~~~~~~~~~-----~~piIiV~NK~Dl~ 335 (472)
T PRK03003 290 AIEAAEVAVVLIDASE-PISEQDQRVLSMVIEA-----GRALVLAFNKWDLV 335 (472)
T ss_pred HHhcCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECcccC
Confidence 2368999999977664 4677777766655542 28999999999985
No 22
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.70 E-value=1.5e-15 Score=124.73 Aligned_cols=125 Identities=22% Similarity=0.338 Sum_probs=85.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcH--HHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY--QALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~--~~~~~i~~~~ 113 (298)
++++|+++|.+|+|||||+|+|++......+..++++..........++..+.+|||||+.+...... +.........
T Consensus 1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 36899999999999999999999987655566666666655556667888899999999976532211 1111111111
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
....+|++++|++.+. ..+.....++..+... ..|+++|+||+|+.+
T Consensus 81 ~~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~ 127 (174)
T cd01895 81 AIERADVVLLVIDATE-GITEQDLRIAGLILEE-----GKALVIVVNKWDLVE 127 (174)
T ss_pred HHhhcCeEEEEEeCCC-CcchhHHHHHHHHHhc-----CCCEEEEEeccccCC
Confidence 2258899999966654 3444444444444332 279999999999863
No 23
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.69 E-value=2.7e-16 Score=127.36 Aligned_cols=117 Identities=21% Similarity=0.262 Sum_probs=83.9
Q ss_pred EEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCc-CcHHHHHHHHhhhhcCCCC
Q 022358 41 LVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-VNYQALELIKGFLLNKTID 119 (298)
Q Consensus 41 llvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~-~~~~~~~~i~~~~~~~~~d 119 (298)
+++|.+|+|||||+|+|++......+..+++|...........+..+.+|||||+.+... ......+...... ..+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~--~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAI--EEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHH--HhCC
Confidence 478999999999999999987656666677776666667777889999999999976433 1111222222222 5799
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 120 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 120 ~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
++++|++... ..+..+..+.+.++... .|+++|+||+|+.
T Consensus 79 ~ii~v~d~~~-~~~~~~~~~~~~~~~~~-----~piiiv~nK~D~~ 118 (157)
T cd01894 79 VILFVVDGRE-GLTPADEEIAKYLRKSK-----KPVILVVNKVDNI 118 (157)
T ss_pred EEEEEEeccc-cCCccHHHHHHHHHhcC-----CCEEEEEECcccC
Confidence 9999966543 34555556666665542 8999999999985
No 24
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.69 E-value=4.9e-16 Score=131.01 Aligned_cols=125 Identities=22% Similarity=0.335 Sum_probs=88.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCC------CcceeE--EEEEEEECCe--EEEEEeCCCCCCCC-----
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQ------SEALRP--VMVSRSKGGF--TLNIIDTPGLVEAG----- 99 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~------~~t~~~--~~~~~~~~g~--~l~viDTPG~~~~~----- 99 (298)
+=.++|+|||.+|.||||++|.++...+...+..+ ..|... ..+..+.+|. +++++|||||+|.-
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc 123 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC 123 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence 34699999999999999999999977553322111 112222 2233444555 67999999999832
Q ss_pred ------cCcHHHHHHHHh--------hhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 100 ------YVNYQALELIKG--------FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 100 ------~~~~~~~~~i~~--------~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+.++++.+.+++ .+.+.+.|++||+++.++..+.+.|.++++.|.+. .++|.|+.|+|..
T Consensus 124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v------vNvvPVIakaDtl 197 (336)
T KOG1547|consen 124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV------VNVVPVIAKADTL 197 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh------heeeeeEeecccc
Confidence 112222222222 12356899999999999877999999999999998 7999999999975
No 25
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.69 E-value=1.9e-15 Score=125.44 Aligned_cols=121 Identities=22% Similarity=0.289 Sum_probs=91.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC-cccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCc---HHHHHHHHh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN---YQALELIKG 111 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~---~~~~~~i~~ 111 (298)
....|+++|++||||||+||+|+|.. .+.++..|+.|.....+.... .+.+||.||++-..... +.+.+.+..
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 45689999999999999999999965 678999999888777665442 38899999998544322 234445555
Q ss_pred hhhc-CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 112 FLLN-KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 112 ~~~~-~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
++.. ....+++++ +|..+ ..+.|.++++.+.+.. .|+++|+||+|..+
T Consensus 100 YL~~R~~L~~vvll--iD~r~~~~~~D~em~~~l~~~~-----i~~~vv~tK~DKi~ 149 (200)
T COG0218 100 YLEKRANLKGVVLL--IDARHPPKDLDREMIEFLLELG-----IPVIVVLTKADKLK 149 (200)
T ss_pred HHhhchhheEEEEE--EECCCCCcHHHHHHHHHHHHcC-----CCeEEEEEccccCC
Confidence 6543 245556666 66655 7777999999998885 89999999999864
No 26
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.68 E-value=1.3e-15 Score=123.26 Aligned_cols=119 Identities=24% Similarity=0.358 Sum_probs=84.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcH-HHHHHHHhhhhcC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY-QALELIKGFLLNK 116 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~-~~~~~i~~~~~~~ 116 (298)
++|+++|++|+|||||+|++++......+..++++...........+.++.+|||||+.+...... ........+ ..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~--~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREA--IE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHH--Hh
Confidence 589999999999999999999988666666777776666666677788999999999976543211 111112222 25
Q ss_pred CCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 117 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 117 ~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
.+|++++|++++. ..+..+.+++.. . ...|+++|+||+|+.+
T Consensus 80 ~~~~~v~v~d~~~-~~~~~~~~~~~~---~----~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 80 EADLVLFVIDASR-GLDEEDLEILEL---P----ADKPIIVVLNKSDLLP 121 (157)
T ss_pred hCCEEEEEEECCC-CCCHHHHHHHHh---h----cCCCEEEEEEchhcCC
Confidence 8999999977764 344444444433 1 2389999999999863
No 27
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.68 E-value=1.3e-15 Score=127.15 Aligned_cols=122 Identities=18% Similarity=0.225 Sum_probs=84.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCC-cccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCc---HHHHHHHH
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN---YQALELIK 110 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~---~~~~~~i~ 110 (298)
.+..+|+++|.+|+|||||+|+|++.. ...++..+++|..+..+.. + ..+.+|||||++...... ..+...+.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 467899999999999999999999985 4455556666665544433 2 379999999987643322 12222233
Q ss_pred hhhh-cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 111 GFLL-NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 111 ~~~~-~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.++. ...+|++++|++.+. +++..+.++++.+... ..|+++|+||+|+.
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~-~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~ 142 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRH-PLKELDLEMLEWLRER-----GIPVLIVLTKADKL 142 (179)
T ss_pred HHHHhChhhcEEEEEecCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECcccC
Confidence 3332 246789999966553 4777777777666543 38999999999985
No 28
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.68 E-value=4.4e-16 Score=128.21 Aligned_cols=124 Identities=15% Similarity=0.152 Sum_probs=80.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe-EEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF-TLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 117 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~ 117 (298)
+|+++|.+|+|||||+|+|.+... .++..+++|..+........+. .+.+|||||+.+.......+...+.+.. ..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~--~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHI--ER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHH--Hh
Confidence 689999999999999999998765 4555555666555555566665 8999999998653322111111111111 46
Q ss_pred CCEEEEEEeCCCC-CCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 118 IDVLLYADRLDAY-RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 118 ~d~vl~v~~~d~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+|++++|++.+.. ...+....+.+.+.+........|+++|+||+|+.
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 127 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL 127 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence 8999999766542 11122234555555543222248999999999985
No 29
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.67 E-value=5.5e-16 Score=138.10 Aligned_cols=124 Identities=21% Similarity=0.388 Sum_probs=78.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccC-CC------Ccc--eeEEEEEEEECCe--EEEEEeCCCCCCCCcCcH--
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNS-FQ------SEA--LRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNY-- 103 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~-~~------~~t--~~~~~~~~~~~g~--~l~viDTPG~~~~~~~~~-- 103 (298)
.++|+|+|.+|+|||||||+|++........ .+ ..+ ..........++. +++|+||||+++.-....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 5899999999999999999999986544321 11 111 1222233344444 689999999987432221
Q ss_pred -HHHHHHH----hh-----------hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 104 -QALELIK----GF-----------LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 104 -~~~~~i~----~~-----------~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
.+.+.+. .+ ..+.++|++||+++.++.++++.|.++++.|.+. .++|.|+.|+|.+.
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~------vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR------VNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT------SEEEEEESTGGGS-
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc------ccEEeEEecccccC
Confidence 1112221 11 1246889999998888877999999999988877 79999999999863
No 30
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.67 E-value=1.7e-15 Score=139.20 Aligned_cols=124 Identities=19% Similarity=0.162 Sum_probs=82.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE-CCeEEEEEeCCCCCCCCcCcHHHHHHHHhhh-
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYVNYQALELIKGFL- 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~- 113 (298)
..++|+++|.+|+|||||+|+|++... .+.+.+++|..+......+ ++.++.++||||+.... .....+.++..+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~-~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l--~~~lie~f~~tle 264 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADV-YAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL--PHELVAAFRATLE 264 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCce-eeccCCccccCCEEEEEEeCCCceEEEEecCcccccC--CHHHHHHHHHHHH
Confidence 348999999999999999999999874 5566667777776666666 57899999999994321 112222222211
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHH-HHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDR-QIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
....+|++++|++.+.. .+..+. .+.+.+.+.... ..|+++|+||+|+.
T Consensus 265 ~~~~ADlil~VvD~s~~-~~~~~~~~~~~~L~~l~~~--~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 265 EVREADLLLHVVDASDP-DREEQIEAVEKVLEELGAE--DIPQLLVYNKIDLL 314 (351)
T ss_pred HHHhCCEEEEEEECCCC-chHHHHHHHHHHHHHhccC--CCCEEEEEEeecCC
Confidence 12589999999766542 222222 233344443212 27999999999985
No 31
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.67 E-value=1.6e-15 Score=124.73 Aligned_cols=122 Identities=19% Similarity=0.247 Sum_probs=79.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHH--HHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQAL--ELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~--~~i~~~~~~ 115 (298)
.+|+++|.+|+|||||+|++++... .++..+..|.........+.+.++.+|||||+.+......... ..+.. + .
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~-~-~ 77 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITA-L-A 77 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHH-H-H
Confidence 3799999999999999999999865 3344445555555555556778999999999965332221111 11111 1 1
Q ss_pred CCCCEEEEEEeCCCCC-CC-HHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYR-VD-DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~-~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
...|++++|++.+... ++ .....+++.+.+.+. ..|+++|+||+|+.
T Consensus 78 ~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~ 126 (168)
T cd01897 78 HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLL 126 (168)
T ss_pred hccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccC
Confidence 2358999996665422 22 233456666665542 28999999999985
No 32
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.67 E-value=4.8e-15 Score=140.60 Aligned_cols=124 Identities=23% Similarity=0.336 Sum_probs=93.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHH--HHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ--ALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~--~~~~i~~~~ 113 (298)
..++|+++|.+|+|||||+|+|++.+...++..+++|..........++..+.++||||+......... .....+...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 469999999999999999999999987777888888887777777788999999999999765443321 111111111
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
....+|++++|++... ..+..+..++..+.+.. +|+++|+||+|+.
T Consensus 252 ~~~~ad~~ilViD~~~-~~~~~~~~i~~~~~~~~-----~~~ivv~NK~Dl~ 297 (435)
T PRK00093 252 AIERADVVLLVIDATE-GITEQDLRIAGLALEAG-----RALVIVVNKWDLV 297 (435)
T ss_pred HHHHCCEEEEEEeCCC-CCCHHHHHHHHHHHHcC-----CcEEEEEECccCC
Confidence 2268899999977664 47777777776665542 8999999999985
No 33
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.66 E-value=2.4e-15 Score=139.84 Aligned_cols=124 Identities=19% Similarity=0.175 Sum_probs=86.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC-eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 117 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~ 117 (298)
.|.|+|.+|||||||+|+|++... .++.++.+|..+......+.. .+++++||||+.+........-..+.+++ .+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i--~r 237 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHL--ER 237 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHH--Hh
Confidence 699999999999999999999876 788899999988888877764 56999999999875433221111222222 58
Q ss_pred CCEEEEEEeCCC---CCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 118 IDVLLYADRLDA---YRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 118 ~d~vl~v~~~d~---~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+|++++|+++.. ....+....+++.+......-..+|+++|+||+|+.
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 999999966541 112222344555555542211237999999999984
No 34
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.66 E-value=6.5e-15 Score=139.44 Aligned_cols=124 Identities=21% Similarity=0.340 Sum_probs=93.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcH--HHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY--QALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~--~~~~~i~~~~ 113 (298)
..++|+++|.+|+|||||+|+|++.+...++..+++|..........++..+.+|||||+.+.....+ +.....+...
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 35899999999999999999999988766777788888777777778888999999999976543331 1111111111
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
....+|++++|++... ..+..+..++..+.+. ..|+++|+||+|+.
T Consensus 251 ~~~~ad~~ilV~D~~~-~~~~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 251 AIERADVVLLVLDATE-GITEQDLRIAGLILEA-----GKALVIVVNKWDLV 296 (429)
T ss_pred HHHhCCEEEEEEECCC-CccHHHHHHHHHHHHc-----CCcEEEEEECcccC
Confidence 2268999999977664 4777777777666553 28999999999985
No 35
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.66 E-value=3.9e-15 Score=140.65 Aligned_cols=122 Identities=20% Similarity=0.245 Sum_probs=88.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHH-HHHHHhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA-LELIKGFL 113 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~-~~~i~~~~ 113 (298)
.+.++|+++|++|+|||||+|+|++...+.++..+++|.........++|.++.+|||||+.+....-+.. ......
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~-- 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFK-- 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHH--
Confidence 35689999999999999999999998877788888888887777788899999999999997543211111 111111
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
....+|++++|++.+. ..+..+. ++..+.. . ..|+++|+||+|+.
T Consensus 279 ~~~~aD~il~V~D~s~-~~s~~~~-~l~~~~~---~--~~piIlV~NK~Dl~ 323 (442)
T TIGR00450 279 AIKQADLVIYVLDASQ-PLTKDDF-LIIDLNK---S--KKPFILVLNKIDLK 323 (442)
T ss_pred HHhhCCEEEEEEECCC-CCChhHH-HHHHHhh---C--CCCEEEEEECccCC
Confidence 2268999999977754 3343333 4433322 1 27999999999984
No 36
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.66 E-value=9.4e-15 Score=146.14 Aligned_cols=124 Identities=19% Similarity=0.203 Sum_probs=93.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCc--HHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN--YQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~--~~~~~~i~~~~ 113 (298)
...+|+++|.+|+|||||+|+|++.+...++..+++|.........+++.++.+|||||+....... .+.+..++...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 3589999999999999999999999876677788888877777777889999999999986533221 23333333222
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
....+|++++|++.+. ..+..+..++..+.+. .+|+++|+||+|+.
T Consensus 529 ~i~~advvilViDat~-~~s~~~~~i~~~~~~~-----~~piIiV~NK~DL~ 574 (712)
T PRK09518 529 AIERSELALFLFDASQ-PISEQDLKVMSMAVDA-----GRALVLVFNKWDLM 574 (712)
T ss_pred HhhcCCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEEchhcC
Confidence 2368999999977654 4677777776655543 28999999999985
No 37
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.65 E-value=2.6e-15 Score=142.16 Aligned_cols=120 Identities=22% Similarity=0.222 Sum_probs=92.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcC-cHHHHHHHHhhhhcCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV-NYQALELIKGFLLNKT 117 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~-~~~~~~~i~~~~~~~~ 117 (298)
+|+++|.+|+|||||+|+|++...+.++..++.|.........+++..+.+|||||+...... .+.+......++ ..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~--~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAI--EE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHH--hh
Confidence 589999999999999999999987778888888888888888889999999999998643211 122222222222 68
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 118 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 118 ~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
+|++++|++... .++..+..+.+.+++. .+|+++|+||+|...
T Consensus 79 ad~vl~vvD~~~-~~~~~d~~i~~~l~~~-----~~piilVvNK~D~~~ 121 (429)
T TIGR03594 79 ADVILFVVDGRE-GLTPEDEEIAKWLRKS-----GKPVILVANKIDGKK 121 (429)
T ss_pred CCEEEEEEeCCC-CCCHHHHHHHHHHHHh-----CCCEEEEEECccCCc
Confidence 999999965543 4777788888888764 289999999999853
No 38
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.65 E-value=4.2e-15 Score=135.49 Aligned_cols=125 Identities=16% Similarity=0.155 Sum_probs=85.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC-eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~ 116 (298)
..|+++|.+|||||||+|+|++... .++.++.+|..+......+.+ .++.++||||+.+...........+.+++ .
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~-~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi--e 234 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI--E 234 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc-cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHH--H
Confidence 4789999999999999999998765 567788888888887777766 89999999999765433222222222222 4
Q ss_pred CCCEEEEEEeCCCCCC--C-HHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 117 TIDVLLYADRLDAYRV--D-DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 117 ~~d~vl~v~~~d~~~~--~-~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
++|++++|++++.... . +....+.+.+......-..+|+++|+||+|+.
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~ 286 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLL 286 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCC
Confidence 7899999977664211 1 11223444444432211248999999999985
No 39
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.65 E-value=3.5e-15 Score=133.63 Aligned_cols=128 Identities=22% Similarity=0.373 Sum_probs=89.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccccc---CCCC----cceeEEEE--EEEECCe--EEEEEeCCCCCCCCcCc
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVN---SFQS----EALRPVMV--SRSKGGF--TLNIIDTPGLVEAGYVN 102 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~---~~~~----~t~~~~~~--~~~~~g~--~l~viDTPG~~~~~~~~ 102 (298)
.+-+++|+++|++|.||||++|+|++....... ...+ .+.....+ ....+|+ +++|+||||++|.-...
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs 99 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNS 99 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccc
Confidence 457899999999999999999999998432221 1111 11122222 2333454 68999999999842211
Q ss_pred ---HHHHHHHH----hh------------hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcC
Q 022358 103 ---YQALELIK----GF------------LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (298)
Q Consensus 103 ---~~~~~~i~----~~------------~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 163 (298)
+-+...+. .+ ..+.++|++||++++++..+++.|..+++.|.+. .++|.|+.|+|
T Consensus 100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~------vNlIPVI~KaD 173 (373)
T COG5019 100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR------VNLIPVIAKAD 173 (373)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc------cCeeeeeeccc
Confidence 11222221 11 2457899999999999888999999999999888 79999999999
Q ss_pred CCCC
Q 022358 164 LCPP 167 (298)
Q Consensus 164 ~~~~ 167 (298)
.+..
T Consensus 174 ~lT~ 177 (373)
T COG5019 174 TLTD 177 (373)
T ss_pred cCCH
Confidence 8643
No 40
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.64 E-value=8.8e-15 Score=136.93 Aligned_cols=123 Identities=16% Similarity=0.187 Sum_probs=86.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC-CeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 117 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~ 117 (298)
.|+++|.+|||||||+|+|++... .++.++.+|..+......+. +.+++++||||+.+...........+.+++ .+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi--er 236 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI--ER 236 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH--hh
Confidence 799999999999999999999875 56778888888887777766 789999999999864433222211221222 57
Q ss_pred CCEEEEEEeCCCC---CCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCC
Q 022358 118 IDVLLYADRLDAY---RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (298)
Q Consensus 118 ~d~vl~v~~~d~~---~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 164 (298)
++++++|++++.. ...+....+.+.|......-..+|+++|+||+|+
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL 286 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL 286 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence 8999999777542 1112223455566554322234899999999997
No 41
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.64 E-value=4.1e-15 Score=126.67 Aligned_cols=125 Identities=19% Similarity=0.162 Sum_probs=78.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe-EEEEEeCCCCCCCCcCcHHHHHHHHhhh-
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF-TLNIIDTPGLVEAGYVNYQALELIKGFL- 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-~l~viDTPG~~~~~~~~~~~~~~i~~~~- 113 (298)
..++|+++|.+|||||||+|++++... .....+..|..+......+.+. .+.+|||||+.+... ......+...+
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~~ 116 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADV-YAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRSTLE 116 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchh-ccCCccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHHHH
Confidence 358999999999999999999999864 2233333444444444444443 899999999865321 12222222111
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
....+|++++|++.+..........+.+.+......+ .|+++|+||+|+.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~--~~viiV~NK~Dl~ 166 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAED--IPMILVLNKIDLL 166 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCC--CCEEEEEEccccC
Confidence 1257899999977664222222223344454443222 7999999999985
No 42
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.63 E-value=7.6e-15 Score=139.28 Aligned_cols=120 Identities=23% Similarity=0.335 Sum_probs=85.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHH-HHHHHhhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA-LELIKGFLL 114 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~-~~~i~~~~~ 114 (298)
..++|+++|.+|+|||||+|+|++.+.+.++..+++|.........++|.++.+|||||+.+....-+.. ...... .
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~--~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSRE--A 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHH--H
Confidence 4689999999999999999999998876777888888877777777889999999999997533211110 111111 2
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
...+|++++|++.+. ..+..+..++.. . ...|+++|+||+|+.
T Consensus 292 ~~~aD~il~VvD~s~-~~s~~~~~~l~~----~---~~~piiiV~NK~DL~ 334 (449)
T PRK05291 292 IEEADLVLLVLDASE-PLTEEDDEILEE----L---KDKPVIVVLNKADLT 334 (449)
T ss_pred HHhCCEEEEEecCCC-CCChhHHHHHHh----c---CCCCcEEEEEhhhcc
Confidence 268999999966653 234334433322 1 127999999999985
No 43
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.63 E-value=5.1e-15 Score=135.09 Aligned_cols=124 Identities=18% Similarity=0.190 Sum_probs=87.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE-CCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~ 116 (298)
..|.|+|.+|||||||+|+|++... .++.++.+|..+......+ ++.+++++||||+.+........-..+.+++ .
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi--e 235 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI--E 235 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh--h
Confidence 3689999999999999999999875 5788888999888887777 5678999999999875543322222222222 5
Q ss_pred CCCEEEEEEeCCCCCCCHHH-HHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 117 TIDVLLYADRLDAYRVDDLD-RQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 117 ~~d~vl~v~~~d~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+++++++|++++... +..+ ..+.+.+......-..+|+++|+||+|+.
T Consensus 236 ~a~vlI~ViD~s~~~-s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~ 284 (335)
T PRK12299 236 RTRLLLHLVDIEAVD-PVEDYKTIRNELEKYSPELADKPRILVLNKIDLL 284 (335)
T ss_pred hcCEEEEEEcCCCCC-CHHHHHHHHHHHHHhhhhcccCCeEEEEECcccC
Confidence 789999997766422 2222 33445555442211238999999999985
No 44
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.63 E-value=4.9e-15 Score=140.53 Aligned_cols=120 Identities=21% Similarity=0.205 Sum_probs=91.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCc-CcHHHHHHHHhhhhcC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-VNYQALELIKGFLLNK 116 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~-~~~~~~~~i~~~~~~~ 116 (298)
++|+++|.+|+|||||+|+|++...+.++..++.|.........+++..+.+|||||+.+... ....+......+ ..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~--~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELA--IE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHH--HH
Confidence 589999999999999999999998777778888888777777888899999999999976322 111122222222 26
Q ss_pred CCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 117 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 117 ~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.+|+++||++... .++..+..+.+.+++. ..|+++|+||+|..
T Consensus 80 ~ad~il~vvd~~~-~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~ 122 (435)
T PRK00093 80 EADVILFVVDGRA-GLTPADEEIAKILRKS-----NKPVILVVNKVDGP 122 (435)
T ss_pred hCCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCcEEEEEECccCc
Confidence 8999999976654 4677777777777765 28999999999964
No 45
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.63 E-value=5.9e-15 Score=141.20 Aligned_cols=123 Identities=18% Similarity=0.228 Sum_probs=91.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCC-cCcHHHHHHHHhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG-YVNYQALELIKGFL 113 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~-~~~~~~~~~i~~~~ 113 (298)
....+|+++|.+|||||||+|+|++...+.++..++.|.........+++..+.+|||||+.... .....+......+.
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 34579999999999999999999998776677788888777777778889999999999986322 11112222222222
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++|+|++.+. ..+..+..+...++.. .+|+++|+||+|+.
T Consensus 116 --~~aD~il~VvD~~~-~~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~ 159 (472)
T PRK03003 116 --RTADAVLFVVDATV-GATATDEAVARVLRRS-----GKPVILAANKVDDE 159 (472)
T ss_pred --HhCCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECccCC
Confidence 58999999977764 4566667777777643 28999999999984
No 46
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=3.1e-15 Score=134.90 Aligned_cols=143 Identities=21% Similarity=0.317 Sum_probs=95.6
Q ss_pred ccccCCchhhHHHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccC------CCCcceeEE--EEEEE
Q 022358 10 AGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS------FQSEALRPV--MVSRS 81 (298)
Q Consensus 10 ~~~~~l~~~~~~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~------~~~~t~~~~--~~~~~ 81 (298)
.|++++|.+... ..-+.+-.++++++|++|.|||||||+|++........ .+..|.... ....+
T Consensus 2 vg~~~lP~q~~r--------~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~ie 73 (366)
T KOG2655|consen 2 VGFANLPNQVHR--------KSVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIE 73 (366)
T ss_pred CccccChHHHHH--------HHHhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeec
Confidence 467788866522 22233467999999999999999999999885422111 111122222 22233
Q ss_pred ECCe--EEEEEeCCCCCCCCcCcH---HHH----HHHHhhh-----------hcCCCCEEEEEEeCCCCCCCHHHHHHHH
Q 022358 82 KGGF--TLNIIDTPGLVEAGYVNY---QAL----ELIKGFL-----------LNKTIDVLLYADRLDAYRVDDLDRQIIK 141 (298)
Q Consensus 82 ~~g~--~l~viDTPG~~~~~~~~~---~~~----~~i~~~~-----------~~~~~d~vl~v~~~d~~~~~~~~~~~l~ 141 (298)
.+|+ +++|+||||++|.-.... -+. ..+.+++ .+.++|++||+++..+..+++.|..+++
T Consensus 74 e~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk 153 (366)
T KOG2655|consen 74 ENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMK 153 (366)
T ss_pred CCCeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHH
Confidence 4454 679999999998321111 111 1112222 2458999999999888779999999999
Q ss_pred HHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 142 AVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 142 ~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
.+... .++|.|+.|+|.+.
T Consensus 154 ~l~~~------vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 154 KLSKK------VNLIPVIAKADTLT 172 (366)
T ss_pred HHhcc------ccccceeeccccCC
Confidence 88887 79999999999863
No 47
>PRK04213 GTP-binding protein; Provisional
Probab=99.61 E-value=5.4e-14 Score=119.41 Aligned_cols=120 Identities=16% Similarity=0.207 Sum_probs=75.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHH----HHHHHHh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ----ALELIKG 111 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~----~~~~i~~ 111 (298)
..++|+++|.+|+|||||+|+|++... .++..+++|.....+ .+. ++.+|||||++......+. +...+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 568999999999999999999999874 455555555543332 222 6899999998654433322 2222222
Q ss_pred hh--hcCCCCEEEEEEeCCCCC-C---------CHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 112 FL--LNKTIDVLLYADRLDAYR-V---------DDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 112 ~~--~~~~~d~vl~v~~~d~~~-~---------~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+. ....++++++|++.+... + ...+..++..+... ..|+++|+||+|+.
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~p~iiv~NK~Dl~ 143 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL-----GIPPIVAVNKMDKI 143 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc-----CCCeEEEEECcccc
Confidence 22 124678999996654310 1 11233344444332 28999999999984
No 48
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.60 E-value=3.1e-15 Score=123.66 Aligned_cols=121 Identities=17% Similarity=0.169 Sum_probs=76.8
Q ss_pred EEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC-CeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCE
Q 022358 42 VMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 120 (298)
Q Consensus 42 lvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~ 120 (298)
++|++|||||||+|+|++... .++..+++|..+......+. +.++.+|||||+.+.....+.....+.... .++|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~--~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHI--RRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHH--hccCE
Confidence 589999999999999999876 45666666766666666677 889999999998653222111111111111 47899
Q ss_pred EEEEEeCCCCC-----CCHHHH-HHHHHHHHHhCC-----CCCceEEEEEeCcCCC
Q 022358 121 LLYADRLDAYR-----VDDLDR-QIIKAVTGTFGK-----QIWRKSLLVLTHAQLC 165 (298)
Q Consensus 121 vl~v~~~d~~~-----~~~~~~-~~l~~l~~~~~~-----~~~~~~ivV~tk~D~~ 165 (298)
+++|++..... .+..+. .+...+...... ....|+++|+||+|+.
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 133 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLD 133 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcC
Confidence 99997665421 111222 233333322111 1238999999999985
No 49
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.60 E-value=2.6e-14 Score=137.11 Aligned_cols=123 Identities=20% Similarity=0.326 Sum_probs=96.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCc-CcHHHHHHHHhhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-VNYQALELIKGFLL 114 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~-~~~~~~~~i~~~~~ 114 (298)
...+|+++|.+|+||||++|+|+|.+. .++++++.|.+.........|..+.++|.||.++-+. ..+|. ..++++.
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~--Var~~ll 78 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEK--VARDFLL 78 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHH--HHHHHHh
Confidence 356799999999999999999999987 8899999999999999999999999999999998442 22322 3455667
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHH--HHHHHhCCCCCceEEEEEeCcCCCCCCCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIK--AVTGTFGKQIWRKSLLVLTHAQLCPPDGLN 171 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~--~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~ 171 (298)
+.++|+++-| +|++. .++++.- .+.+. ..|+++++|++|.....+..
T Consensus 79 ~~~~D~ivnV--vDAtn---LeRnLyltlQLlE~-----g~p~ilaLNm~D~A~~~Gi~ 127 (653)
T COG0370 79 EGKPDLIVNV--VDATN---LERNLYLTLQLLEL-----GIPMILALNMIDEAKKRGIR 127 (653)
T ss_pred cCCCCEEEEE--cccch---HHHHHHHHHHHHHc-----CCCeEEEeccHhhHHhcCCc
Confidence 7899999999 77633 3444332 33333 38999999999986555443
No 50
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.60 E-value=1.5e-14 Score=117.37 Aligned_cols=115 Identities=17% Similarity=0.253 Sum_probs=78.0
Q ss_pred EEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEE
Q 022358 42 VMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL 121 (298)
Q Consensus 42 lvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~v 121 (298)
|+|.+|+|||||+|++++.. ..++..+++|.........+++.++.+|||||+.+......+. ...+.+.....+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~-~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDE-KVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhH-HHHHHHhcCCCCcEE
Confidence 58999999999999999986 3556666777766666677788899999999997654322110 111222222689999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 122 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 122 l~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
++|++.+. . .....+...+.+. .+|+++|+||+|+.+
T Consensus 79 i~v~d~~~--~-~~~~~~~~~~~~~-----~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 79 VNVVDATN--L-ERNLYLTLQLLEL-----GLPVVVALNMIDEAE 115 (158)
T ss_pred EEEeeCCc--c-hhHHHHHHHHHHc-----CCCEEEEEehhhhcc
Confidence 99965543 2 2223333333332 289999999999853
No 51
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.59 E-value=2.1e-15 Score=138.94 Aligned_cols=162 Identities=22% Similarity=0.281 Sum_probs=123.1
Q ss_pred CcccccchhccccCCchhhHHHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEE
Q 022358 1 MGSLLLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSR 80 (298)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~ 80 (298)
||+.+.++..++..|. +...-+.+++......-+++|+|.+++|||||+|.++..++ .+.+++.+|+.....+.
T Consensus 137 m~tv~k~q~~sl~yLe-----qVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~ 210 (620)
T KOG1490|consen 137 MATIIKRQKSSLEYLE-----QVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHL 210 (620)
T ss_pred HHHHHHHhcchHHHHH-----HHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhccccccccc-ccCCcccccchhhhhhh
Confidence 6677777777777774 44445888998888999999999999999999999998877 77888899988888888
Q ss_pred EECCeEEEEEeCCCCCCCCcCcHHHHHHHH-hhhhcCCCCEEEEEEeCCCCC-CCH-HHHHHHHHHHHHhCCCCCceEEE
Q 022358 81 SKGGFTLNIIDTPGLVEAGYVNYQALELIK-GFLLNKTIDVLLYADRLDAYR-VDD-LDRQIIKAVTGTFGKQIWRKSLL 157 (298)
Q Consensus 81 ~~~g~~l~viDTPG~~~~~~~~~~~~~~i~-~~~~~~~~d~vl~v~~~d~~~-~~~-~~~~~l~~l~~~~~~~~~~~~iv 157 (298)
.+.-..+.++||||+.|....+...++... ..+. .-..+|||+.+++... .+- .+.++++.|+..|.+ +++|+
T Consensus 211 dykYlrwQViDTPGILD~plEdrN~IEmqsITALA-HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaN---K~~Il 286 (620)
T KOG1490|consen 211 DYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALA-HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFAN---KVTIL 286 (620)
T ss_pred hhheeeeeecCCccccCcchhhhhHHHHHHHHHHH-HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcC---CceEE
Confidence 888889999999999985543332222111 1111 1235799997777543 443 456789999999977 89999
Q ss_pred EEeCcCCCCCCCCCh
Q 022358 158 VLTHAQLCPPDGLNY 172 (298)
Q Consensus 158 V~tk~D~~~~~~~~~ 172 (298)
|+||+|...+++...
T Consensus 287 vlNK~D~m~~edL~~ 301 (620)
T KOG1490|consen 287 VLNKIDAMRPEDLDQ 301 (620)
T ss_pred EeecccccCccccCH
Confidence 999999987766543
No 52
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.59 E-value=8.2e-14 Score=113.60 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=75.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
.+|+++|++|+|||||+|++++..... ...+..+.+........++ ..+.+|||||... ....+..++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~-------~~~~~~~~~-- 70 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDN-QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQER-------FRSLIPSYI-- 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-cCCCceeeeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHh--
Confidence 379999999999999999999987633 2233333333344444555 3689999999532 222222222
Q ss_pred CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++... +... ..++..+....+. ..|+++|+||+|+.
T Consensus 71 ~~~~~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~--~~~iilv~nK~D~~ 118 (161)
T cd01861 71 RDSSVAVVVYDITNRQSFDNT-DKWIDDVRDERGN--DVIIVLVGNKTDLS 118 (161)
T ss_pred ccCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCC--CCEEEEEEEChhcc
Confidence 6889999998887532 3222 3455555544432 38999999999985
No 53
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.59 E-value=1.7e-13 Score=116.44 Aligned_cols=125 Identities=13% Similarity=0.101 Sum_probs=74.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCc-CcHHHHHHHHhhhh
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGY-VNYQALELIKGFLL 114 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~-~~~~~~~~i~~~~~ 114 (298)
++|+++|.+|||||||+|++.+...... ..+..+.........++| ..+.+|||||..+... ..+++...... .
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~-~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~--~ 77 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEE-YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFR--G 77 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcc-cCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHh--h
Confidence 4899999999999999999998764222 122222122222334556 4678999999865321 12222221111 1
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhC-CCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFG-KQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~-~~~~~~~ivV~tk~D~~ 165 (298)
...+|++++|++++...--+.-..+.+.+.+... .....|+++|.||+|+.
T Consensus 78 ~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~ 129 (198)
T cd04142 78 LRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ 129 (198)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc
Confidence 2689999999887642111112334444544431 12237999999999994
No 54
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.58 E-value=2.2e-13 Score=111.17 Aligned_cols=117 Identities=16% Similarity=0.141 Sum_probs=72.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++|+++|.+|+|||||+|++++.... ....+..+...........+ ..+.+|||||... +......++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~-- 70 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFS-EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQER-------FRSITSSYY-- 70 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHh--
Confidence 58999999999999999999988652 12222222222333445555 4788999999631 111222222
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|+++....-.+.-..++..+...... ..|+++|.||+|+.+
T Consensus 71 ~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~--~~pivvv~nK~D~~~ 119 (164)
T smart00175 71 RGAVGALLVYDITNRESFENLKNWLKELREYADP--NVVIMLVGNKSDLED 119 (164)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEEchhccc
Confidence 5799999997775421111112344555444322 389999999999853
No 55
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.58 E-value=3.7e-14 Score=116.61 Aligned_cols=120 Identities=21% Similarity=0.133 Sum_probs=74.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 117 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~ 117 (298)
++|+++|.+|+|||||+|++++...........................+.+|||||...... .... + ...
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~~~---~--~~~ 72 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPA----MQRL---S--ISK 72 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchH----HHHH---H--hhc
Confidence 689999999999999999999876422111111111111122222345789999999854321 1111 1 157
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCC-CCceEEEEEeCcCCCC
Q 022358 118 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQ-IWRKSLLVLTHAQLCP 166 (298)
Q Consensus 118 ~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~-~~~~~ivV~tk~D~~~ 166 (298)
+|++++|++++....-+....+++.+.+..+.. ...|+++|.||+|+.+
T Consensus 73 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 73 GHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 899999988876331122344556666654432 3479999999999853
No 56
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=2.9e-14 Score=131.52 Aligned_cols=133 Identities=20% Similarity=0.234 Sum_probs=97.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
....++|+++|++|+|||||+|+|..++...+++.+++|++......+++|+++.++||.|+-+.....-+.+...+...
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence 34569999999999999999999999999999999999999999999999999999999999873222223332333333
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---hCC----CCCceEEEEEeCcCCCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGT---FGK----QIWRKSLLVLTHAQLCPP 167 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~---~~~----~~~~~~ivV~tk~D~~~~ 167 (298)
...++|++++|++... ..+..+..+.+.+... ..- ....+++++.||.|+.++
T Consensus 345 ~~~~advi~~vvda~~-~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 345 RIERADVILLVVDAEE-SDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHhhcCEEEEEecccc-cccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 4479999999966643 2344444444444332 111 123689999999998643
No 57
>PRK11058 GTPase HflX; Provisional
Probab=99.57 E-value=3.4e-14 Score=133.63 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=81.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe-EEEEEeCCCCCCCCcCcHHHHHHHHhhh-hc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF-TLNIIDTPGLVEAGYVNYQALELIKGFL-LN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-~l~viDTPG~~~~~~~~~~~~~~i~~~~-~~ 115 (298)
.+|+++|.+|+|||||+|+|++.+.. +.+.+++|..+......+.+. .+.++||||+... ......+.+...+ ..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~f~~tl~~~ 274 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAAFKATLQET 274 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHHHHHHHHHh
Confidence 58999999999999999999998864 566667777766655655554 8899999999542 1122222232211 23
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHH-HHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQ-IIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~-~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++|+|++.+.. .+..+.. +.+.+.+.... ..|+++|+||+|+.
T Consensus 275 ~~ADlIL~VvDaS~~-~~~e~l~~v~~iL~el~~~--~~pvIiV~NKiDL~ 322 (426)
T PRK11058 275 RQATLLLHVVDAADV-RVQENIEAVNTVLEEIDAH--EIPTLLVMNKIDML 322 (426)
T ss_pred hcCCEEEEEEeCCCc-cHHHHHHHHHHHHHHhccC--CCCEEEEEEcccCC
Confidence 689999999766542 2223322 23334443222 37999999999985
No 58
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.57 E-value=5e-14 Score=113.25 Aligned_cols=117 Identities=28% Similarity=0.443 Sum_probs=78.6
Q ss_pred EEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC-CeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCE
Q 022358 42 VMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 120 (298)
Q Consensus 42 lvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~ 120 (298)
++|++|+|||||+|+|++......+...+.+........... +..+.++||||+.+...........+.... ..+|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~--~~~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVL--ERADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHH--HhCCE
Confidence 589999999999999999876555666666666555555554 678999999999876654432222332222 57999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 121 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 121 vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
+++|++.... .......+....... ..|+++|+||+|+..
T Consensus 79 il~v~~~~~~-~~~~~~~~~~~~~~~-----~~~~ivv~nK~D~~~ 118 (163)
T cd00880 79 ILFVVDADLR-ADEEEEKLLELLRER-----GKPVLLVLNKIDLLP 118 (163)
T ss_pred EEEEEeCCCC-CCHHHHHHHHHHHhc-----CCeEEEEEEccccCC
Confidence 9999666542 232233222222222 289999999999863
No 59
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.57 E-value=9.3e-14 Score=113.33 Aligned_cols=114 Identities=20% Similarity=0.235 Sum_probs=72.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccc--CCCCcceeEEEEEEEEC-CeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVN--SFQSEALRPVMVSRSKG-GFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~--~~~~~t~~~~~~~~~~~-g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
+.|+++|.+|+|||||+|+|++....... ..++.|.........+. +..+.+|||||..+ +...+....
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-------~~~~~~~~~- 72 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-------FIKNMLAGA- 72 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-------HHHHHHhhh-
Confidence 46899999999999999999986422211 12233444444445554 77999999999732 222222222
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++.+. .......+.+..+... +. +|+++|+||+|+.
T Consensus 73 -~~ad~ii~V~d~~~-~~~~~~~~~~~~~~~~-~~---~~~ilv~NK~Dl~ 117 (164)
T cd04171 73 -GGIDLVLLVVAADE-GIMPQTREHLEILELL-GI---KRGLVVLTKADLV 117 (164)
T ss_pred -hcCCEEEEEEECCC-CccHhHHHHHHHHHHh-CC---CcEEEEEECcccc
Confidence 58999999977754 2223333333333322 21 4899999999985
No 60
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=5.5e-14 Score=133.36 Aligned_cols=125 Identities=16% Similarity=0.153 Sum_probs=85.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 117 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~ 117 (298)
..|+|+|.+|||||||+|+|++... .++.++.+|..+......+.+.+++++||||+.+........-..+.+++ .+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhi--er 236 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHI--ER 236 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHH--Hh
Confidence 5899999999999999999999875 56788889988888888888889999999999764432221111111222 57
Q ss_pred CCEEEEEEeCCCC---CCCHHHH-HHHHHHHHHhC---------CCCCceEEEEEeCcCCC
Q 022358 118 IDVLLYADRLDAY---RVDDLDR-QIIKAVTGTFG---------KQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 118 ~d~vl~v~~~d~~---~~~~~~~-~~l~~l~~~~~---------~~~~~~~ivV~tk~D~~ 165 (298)
+|++++|++.+.. +-...+. .+.+.|..+.. .-..+|+++|+||+|+.
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~ 297 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVP 297 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccch
Confidence 8999999665421 1011122 23334443321 11248999999999984
No 61
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.56 E-value=6.6e-14 Score=140.08 Aligned_cols=120 Identities=16% Similarity=0.215 Sum_probs=92.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCC-cCcHHHHHHHHhhhhcC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG-YVNYQALELIKGFLLNK 116 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~-~~~~~~~~~i~~~~~~~ 116 (298)
.+|+++|.+|+|||||+|+|+|...+.++..++.|.........+++..+.+|||||+.... .....+......++ .
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~--~ 353 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV--S 353 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH--H
Confidence 68999999999999999999998877778888888888777788889999999999986422 11222222222222 6
Q ss_pred CCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 117 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 117 ~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.+|++|+|++... .++..+..+.+.++.. .+|+++|+||+|+.
T Consensus 354 ~aD~iL~VvDa~~-~~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~ 396 (712)
T PRK09518 354 LADAVVFVVDGQV-GLTSTDERIVRMLRRA-----GKPVVLAVNKIDDQ 396 (712)
T ss_pred hCCEEEEEEECCC-CCCHHHHHHHHHHHhc-----CCCEEEEEECcccc
Confidence 8999999966543 4677777777777653 38999999999984
No 62
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.56 E-value=7.7e-14 Score=114.19 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=73.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++|+++|.+|+|||||+|++++..... ...+..+........... ...+.+|||||... .......+.
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~-- 70 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE-------YLEVRNEFY-- 70 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCeEEEEEEEECCccHH-------HHHHHHHHh--
Confidence 589999999999999999999887422 111111111111222333 45789999999732 111112222
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCC---CCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGK---QIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~---~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++....-+....++..+...... ....|+++|.||+|+.
T Consensus 71 ~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 71 KDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred ccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 6899999998776522112234566666665542 1348999999999985
No 63
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.55 E-value=2.5e-13 Score=111.48 Aligned_cols=118 Identities=16% Similarity=0.157 Sum_probs=73.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
.++|+++|.+|+|||||++++.+........ +..+.........+++ ..+.+|||||... .......+.
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~~~- 73 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG-NTIGVDFTMKTLEIEGKRVKLQIWDTAGQER-------FRTITQSYY- 73 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCC-CccceEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHh-
Confidence 4899999999999999999998765422111 1111122223344555 4789999999532 111122222
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++....-.....++..+...... ..|+++|.||+|+..
T Consensus 74 -~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 74 -RSANGAIIAYDITRRSSFESVPHWIEEVEKYGAS--NVVLLLIGNKCDLEE 122 (165)
T ss_pred -ccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC--CCcEEEEEECccccc
Confidence 5789999998877532112224566666554322 378999999999853
No 64
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.55 E-value=4e-14 Score=116.53 Aligned_cols=115 Identities=20% Similarity=0.224 Sum_probs=74.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++|+++|.+|+|||||+|++++..... . ..++............ ...+.+|||||..+....... ..
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~---------~~ 69 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPT-E-YVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPL---------SY 69 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-C-CCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchh---------hc
Confidence 589999999999999999999887521 1 1111111111222223 446899999998654222111 11
Q ss_pred CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++... +......++..+..... ..|+++|+||+|+.+
T Consensus 70 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~ 118 (171)
T cd00157 70 PNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRD 118 (171)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhh
Confidence 5789999998877522 33344455666655543 389999999999853
No 65
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.55 E-value=7.1e-14 Score=114.21 Aligned_cols=119 Identities=17% Similarity=0.145 Sum_probs=73.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVN-SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~-~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
+++|+++|++|+|||||+|++++....... ...+.+...........+..+.+|||||... +......++
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~-- 71 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER-------YRSLAPMYY-- 71 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHH-------HHHHHHHHh--
Confidence 379999999999999999999998753311 1111111122222222345788999999632 111111112
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++...--.....++..+...... ..|+++|.||+|+.+
T Consensus 72 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~ 120 (163)
T cd01860 72 RGAAAAIVVYDITSEESFEKAKSWVKELQRNASP--NIIIALVGNKADLES 120 (163)
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 5789999997776422112234555666555432 378999999999853
No 66
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.55 E-value=2.2e-13 Score=114.91 Aligned_cols=121 Identities=21% Similarity=0.232 Sum_probs=79.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC-cccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCc---HHHHHHHHh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN---YQALELIKG 111 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~---~~~~~~i~~ 111 (298)
..++|+++|.+|+|||||+|+|++.+ ...++..+++|.....+.. +.++.+|||||+....... +++...+..
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 56899999999999999999999975 4455555555554443332 4689999999986533221 122222233
Q ss_pred hhh-cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 112 FLL-NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 112 ~~~-~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
++. ....+++++|++.+. ..+..+.++.+.+... ..|+++++||+|+.
T Consensus 100 ~~~~~~~~~~~~~v~d~~~-~~~~~~~~i~~~l~~~-----~~~~iiv~nK~Dl~ 148 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRH-PLKELDLQMIEWLKEY-----GIPVLIVLTKADKL 148 (196)
T ss_pred HHHhCccceEEEEEEecCC-CCCHHHHHHHHHHHHc-----CCcEEEEEECcccC
Confidence 332 245678888855443 3555555566555432 37899999999985
No 67
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.54 E-value=2e-13 Score=111.68 Aligned_cols=116 Identities=18% Similarity=0.205 Sum_probs=70.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
.+|+++|.+|+|||||+|++++..... ...+++..........++ ..+.+|||||..+... .. ..+.
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~----~~---~~~~-- 69 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVD--DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSA----MR---DQYM-- 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc--ccCCchhhhEEEEEEECCEEEEEEEEECCCcccchH----HH---HHHH--
Confidence 489999999999999999999876422 222222222222333444 4678999999754321 11 1112
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++....-+.-..+...+.+.... ...|+++|.||+|+.
T Consensus 70 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~ 118 (164)
T smart00173 70 RTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLE 118 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccc
Confidence 4789999998777522111112333444443322 137999999999985
No 68
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.54 E-value=1.8e-13 Score=112.72 Aligned_cols=114 Identities=17% Similarity=0.233 Sum_probs=71.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEE--EEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV--SRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~--~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++|+++|.+|+|||||+|++.+..... ..+. +...... .......++.+|||||..+.. .. ...++
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~~----~~~~~-- 68 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPE--NVPR-VLPEITIPADVTPERVPTTIVDTSSRPQDR---AN----LAAEI-- 68 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc--cCCC-cccceEeeeeecCCeEEEEEEeCCCchhhh---HH----Hhhhc--
Confidence 489999999999999999999876422 1222 1111112 222245678999999975321 11 12222
Q ss_pred CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++... +......++..+.+... ..|+++|+||+|+.+
T Consensus 69 ~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~pviiv~nK~Dl~~ 117 (166)
T cd01893 69 RKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV---KVPIILVGNKSDLRD 117 (166)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhccc
Confidence 5799999998776522 22222345555655433 389999999999953
No 69
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.54 E-value=1.6e-13 Score=110.64 Aligned_cols=116 Identities=14% Similarity=0.098 Sum_probs=72.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE--CCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++|+++|.+|+|||||+|++++....... .+..+.......... ....+.+|||||... .......++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~-- 70 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENY-KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-------FRSITPSYY-- 70 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCcc-CCceeeeeEEEEEEECCEEEEEEEEecCChHH-------HHHHHHHHh--
Confidence 58999999999999999999988754331 111111222222333 346789999999732 111222222
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++...--.....++..+...... ..|+++|+||+|..
T Consensus 71 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~ 118 (159)
T cd00154 71 RGAHGAILVYDITNRESFENLDKWLKELKEYAPE--NIPIILVGNKIDLE 118 (159)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEccccc
Confidence 5799999997776422111123355555555422 28999999999985
No 70
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.54 E-value=2.1e-13 Score=112.52 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=72.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
-++|+++|.+|+|||||+|++++........ +..+..........++ ..+.+|||||.. .+......+.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-------~~~~~~~~~~- 74 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMITIDGKQIKLQIWDTAGQE-------SFRSITRSYY- 74 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC-CccceeEEEEEEEECCEEEEEEEEECCCcH-------HHHHHHHHHh-
Confidence 3799999999999999999999876533222 1111222222233333 578999999952 1111122222
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++....-..-..++..++..... ..|+++|.||.|+.+
T Consensus 75 -~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pvivv~nK~Dl~~ 123 (168)
T cd01866 75 -RGAAGALLVYDITRRETFNHLTSWLEDARQHSNS--NMTIMLIGNKCDLES 123 (168)
T ss_pred -ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECccccc
Confidence 5889999998876422111223455555544322 379999999999853
No 71
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.54 E-value=2.6e-13 Score=135.76 Aligned_cols=121 Identities=17% Similarity=0.259 Sum_probs=87.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcH--HHHH-HHHhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY--QALE-LIKGF 112 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~--~~~~-~i~~~ 112 (298)
...+|+++|.+|+|||||+|+|+|... .+++++++|.+.......+++.++.++||||.++...... ...+ ..+.+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 357899999999999999999999876 6788899898877777788889999999999987432111 1111 12334
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+....+|++++| +|++... ....+...+.+. ..|+++|+||+|..
T Consensus 81 l~~~~aD~vI~V--vDat~le-r~l~l~~ql~e~-----giPvIvVlNK~Dl~ 125 (772)
T PRK09554 81 ILSGDADLLINV--VDASNLE-RNLYLTLQLLEL-----GIPCIVALNMLDIA 125 (772)
T ss_pred HhccCCCEEEEE--ecCCcch-hhHHHHHHHHHc-----CCCEEEEEEchhhh
Confidence 445689999999 4543332 233344444443 38999999999985
No 72
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.54 E-value=1.6e-13 Score=112.54 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=73.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
.++|+++|.+|+|||||+|++++...... ..+..+..........++ ..+.+|||||... +......+.
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~- 73 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLD-SKSTIGVEFATRSIQIDGKTIKAQIWDTAGQER-------YRAITSAYY- 73 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCccceEEEEEEEEECCEEEEEEEEeCCChHH-------HHHHHHHHH-
Confidence 37999999999999999999998865322 222322222233344444 4688999999632 111112222
Q ss_pred cCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..++++++|+++.... +.. -.+++..+.+.... ..|+++|.||+|+..
T Consensus 74 -~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~--~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 74 -RGAVGALLVYDITKKQTFEN-VERWLKELRDHADS--NIVIMLVGNKSDLRH 122 (165)
T ss_pred -CCCCEEEEEEECcCHHHHHH-HHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 5789999997776422 211 12455555554432 279999999999853
No 73
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.53 E-value=1.1e-13 Score=112.89 Aligned_cols=117 Identities=16% Similarity=0.171 Sum_probs=72.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++|+++|.+|||||||+|++.+.... ....+++..........++ ..+.+|||||........ ..+.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~-- 70 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMR-------DLYI-- 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHH-------HHHh--
Confidence 68999999999999999999976542 2222222222222333444 467889999975432111 1111
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++....-+.-..+++.+.+.... ...|+++|+||+|+.+
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~ 120 (163)
T cd04136 71 KNGQGFVLVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLED 120 (163)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 5789999998887522112223445555544321 2379999999999853
No 74
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.53 E-value=3.3e-13 Score=112.69 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=74.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccC---------------CCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcH
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNS---------------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY 103 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~---------------~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~ 103 (298)
+|+++|.+|+|||||+|+|++........ ..+.+........+..+..+.+|||||..+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~----- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF----- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-----
Confidence 58999999999999999999876432210 1122333334455666789999999998532
Q ss_pred HHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 104 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 104 ~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
......++ ..+|++++|++... ..+....+++..+... ..|+++|+||+|+..
T Consensus 76 --~~~~~~~~--~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~-----~~~i~iv~nK~D~~~ 128 (189)
T cd00881 76 --SSEVIRGL--SVSDGAILVVDANE-GVQPQTREHLRIAREG-----GLPIIVAINKIDRVG 128 (189)
T ss_pred --HHHHHHHH--HhcCEEEEEEECCC-CCcHHHHHHHHHHHHC-----CCCeEEEEECCCCcc
Confidence 11122222 47899999966653 2444455555555442 289999999999863
No 75
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.53 E-value=1.8e-13 Score=111.89 Aligned_cols=117 Identities=21% Similarity=0.202 Sum_probs=72.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
.++|+++|.+|+|||||+|++++... .....+++..........++ ..+.+|||||..+... ....++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~- 71 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSA-------MREQYM- 71 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhH-------HHHHHH-
Confidence 47999999999999999999998754 23333332222222334444 4688999999753321 111222
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++...--..-..++..+...... ...|+++|+||+|+.
T Consensus 72 -~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piiiv~NK~Dl~ 120 (164)
T cd04145 72 -RTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDR-DEFPMILVGNKADLE 120 (164)
T ss_pred -hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCCEEEEeeCcccc
Confidence 5789999998777522111123344444443221 237999999999985
No 76
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.53 E-value=1.2e-13 Score=113.44 Aligned_cols=115 Identities=12% Similarity=0.079 Sum_probs=69.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccc---cCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTV---NSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~---~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
+|+++|.+|+|||||+|.|++...... ......|.........+++..+.+|||||..+.. .....+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~-- 71 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLR-------SLWDKYY-- 71 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhH-------HHHHHHh--
Confidence 589999999999999999987532110 1111223333334556678899999999985321 1112222
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCC--CCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~ 165 (298)
.++|++++|++..... ........+...... ....|+++|+||+|+.
T Consensus 72 ~~~~~~v~vvd~~~~~---~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~ 120 (167)
T cd04160 72 AECHAIIYVIDSTDRE---RFEESKSALEKVLRNEALEGVPLLILANKQDLP 120 (167)
T ss_pred CCCCEEEEEEECchHH---HHHHHHHHHHHHHhChhhcCCCEEEEEEccccc
Confidence 6899999996654311 111122222222221 1237999999999984
No 77
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.53 E-value=1.7e-13 Score=112.42 Aligned_cols=111 Identities=15% Similarity=0.089 Sum_probs=72.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC---CeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG---GFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
+|+++|.+|+|||||+|+|++..... ...++.|.....+..... +..+.+|||||.... ......+.
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~-------~~~~~~~~-- 71 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF-------TNMRARGA-- 71 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH-------HHHHHHHH--
Confidence 58999999999999999999876533 222333443333444443 678999999997321 11111111
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++.+. .........+..+... ..|+++|+||+|+.
T Consensus 72 ~~~d~il~v~d~~~-~~~~~~~~~~~~~~~~-----~~p~ivv~NK~Dl~ 115 (168)
T cd01887 72 SLTDIAILVVAADD-GVMPQTIEAIKLAKAA-----NVPFIVALNKIDKP 115 (168)
T ss_pred hhcCEEEEEEECCC-CccHHHHHHHHHHHHc-----CCCEEEEEEceecc
Confidence 58899999977764 2233344445544432 27999999999984
No 78
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.53 E-value=5.7e-13 Score=112.82 Aligned_cols=114 Identities=10% Similarity=0.055 Sum_probs=77.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcc------ccc---------CCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVV------TVN---------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV 101 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~------~~~---------~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~ 101 (298)
.++|+++|..++|||||+++|++.... ... ...+.|........+.++.++.++||||..
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~----- 76 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA----- 76 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH-----
Confidence 479999999999999999999864100 000 122344444445566778899999999984
Q ss_pred cHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCc-eEEEEEeCcCCC
Q 022358 102 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWR-KSLLVLTHAQLC 165 (298)
Q Consensus 102 ~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~-~~ivV~tk~D~~ 165 (298)
.+...+...+ ..+|++++|++.+. .....+.+.+..+.... . ++|+++||+|+.
T Consensus 77 --~~~~~~~~~~--~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~~-----~~~iIvviNK~D~~ 131 (195)
T cd01884 77 --DYIKNMITGA--AQMDGAILVVSATD-GPMPQTREHLLLARQVG-----VPYIVVFLNKADMV 131 (195)
T ss_pred --HHHHHHHHHh--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHcC-----CCcEEEEEeCCCCC
Confidence 2233333222 58999999966553 36666667776665542 4 488999999985
No 79
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.53 E-value=3.1e-13 Score=109.91 Aligned_cols=115 Identities=20% Similarity=0.271 Sum_probs=70.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++|+++|.+|+|||||+|++++.... ....++...........++ ..+.+|||||..... .....++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~l~~~~~-- 70 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYM-- 70 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--CCcCCcchheEEEEEEECCEEEEEEEEECCCCcchH-------HHHHHHH--
Confidence 68999999999999999999987642 2222222222222334444 357789999974321 1111222
Q ss_pred CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++... +.. -..+...+.+... ....|+++|+||+|+.
T Consensus 71 ~~~~~~i~v~~~~~~~s~~~-~~~~~~~i~~~~~-~~~~piivv~nK~Dl~ 119 (162)
T cd04138 71 RTGEGFLCVFAINSRKSFED-IHTYREQIKRVKD-SDDVPMVLVGNKCDLA 119 (162)
T ss_pred hcCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence 4789999998887522 221 1234444444432 1237999999999985
No 80
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.53 E-value=1.9e-13 Score=111.54 Aligned_cols=117 Identities=14% Similarity=0.168 Sum_probs=72.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++|+++|.+|+|||||+|++++........ +..+..........++ ..+.+|||||.... ......+.
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-------~~~~~~~~-- 70 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQ-HTIGVEFGSKIIRVGGKRVKLQIWDTAGQERF-------RSVTRSYY-- 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC-CceeeeEEEEEEEECCEEEEEEEEECcchHHH-------HHhHHHHh--
Confidence 589999999999999999999876422211 1111111222233333 46889999997321 11122222
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++...-...-..++..++.....+ .|+++|+||+|+.+
T Consensus 71 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~ 119 (161)
T cd04113 71 RGAAGALLVYDITNRTSFEALPTWLSDARALASPN--IVVILVGNKSDLAD 119 (161)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcch
Confidence 58899999988875221111234555555544333 79999999999854
No 81
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.53 E-value=6.4e-13 Score=109.42 Aligned_cols=119 Identities=15% Similarity=0.106 Sum_probs=70.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++|+++|.+|+|||||+|++++...... ..+..+...........+ ..+.+|||||..... .....++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~-- 70 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ-------SLGVAFY-- 70 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcC-cCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH-------hHHHHHh--
Confidence 5899999999999999999998864221 111111112222234444 356799999963211 1111222
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCC--CCCceEEEEEeCcCCCC
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~~ 166 (298)
.++|++++|++++....-..-..+.+.+...... ....|+++|+||+|+..
T Consensus 71 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 71 RGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 6799999998776422101112333333333321 12379999999999964
No 82
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.53 E-value=9e-14 Score=115.24 Aligned_cols=123 Identities=20% Similarity=0.312 Sum_probs=75.6
Q ss_pred HHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHH
Q 022358 26 LLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA 105 (298)
Q Consensus 26 ~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~ 105 (298)
++++... ....++|+++|.+|+|||||+|++++.......+ |.........+++..+.+|||||....
T Consensus 4 ~~~~~~~-~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~----t~g~~~~~~~~~~~~l~l~D~~G~~~~------- 71 (173)
T cd04154 4 IIRKQKL-KEREMRILILGLDNAGKTTILKKLLGEDIDTISP----TLGFQIKTLEYEGYKLNIWDVGGQKTL------- 71 (173)
T ss_pred hhhhhhc-CCCccEEEEECCCCCCHHHHHHHHccCCCCCcCC----ccccceEEEEECCEEEEEEECCCCHHH-------
Confidence 3444443 2356899999999999999999999875422211 222222334456789999999997421
Q ss_pred HHHHHhhhhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHH-HhCCCCCceEEEEEeCcCCC
Q 022358 106 LELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTG-TFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 106 ~~~i~~~~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~-~~~~~~~~~~ivV~tk~D~~ 165 (298)
......+. ..+|++++|++.+... +... ...+..+.. ... ...|+++|+||+|+.
T Consensus 72 ~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~ 128 (173)
T cd04154 72 RPYWRNYF--ESTDALIWVVDSSDRLRLDDC-KRELKELLQEERL--AGATLLILANKQDLP 128 (173)
T ss_pred HHHHHHHh--CCCCEEEEEEECCCHHHHHHH-HHHHHHHHhChhh--cCCCEEEEEECcccc
Confidence 11122222 5899999997776521 2211 122222221 111 238999999999985
No 83
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.52 E-value=2.4e-13 Score=111.74 Aligned_cols=117 Identities=11% Similarity=0.111 Sum_probs=70.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++|+++|.+|+|||||+|++.+....... .+..+..........++ ..+.+|||||..... .....+ .
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~-------~~~~~~--~ 71 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAF-VSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYR-------TITTAY--Y 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCceeeEEEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHH--c
Confidence 68999999999999999999987642211 11111111111222333 578999999964211 111111 2
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++....-+.-.++++.+...... ..|+++|.||+|+.+
T Consensus 72 ~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piivv~nK~Dl~~ 120 (165)
T cd01865 72 RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVILVGNKCDMED 120 (165)
T ss_pred cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCCEEEEEECcccCc
Confidence 6899999998776422111123455555544332 278999999999853
No 84
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.52 E-value=6.6e-13 Score=111.79 Aligned_cols=115 Identities=16% Similarity=0.230 Sum_probs=80.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccc------------c-----CCCCcceeEEEEEEE--ECCeEEEEEeCCCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTV------------N-----SFQSEALRPVMVSRS--KGGFTLNIIDTPGLV 96 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~------------~-----~~~~~t~~~~~~~~~--~~g~~l~viDTPG~~ 96 (298)
+-.+|+++|.+++|||||+++|++...... . ...+.|......... ..+..++++||||..
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 457999999999999999999996532100 0 012334444455566 889999999999973
Q ss_pred CCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 97 EAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 97 ~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.+...+...+ ..+|++++|++... .+.....+.+..+.... .|+++|+||+|..
T Consensus 82 -------~f~~~~~~~~--~~~D~ailvVda~~-g~~~~~~~~l~~~~~~~-----~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 82 -------DFIKEMIRGL--RQADIAILVVDAND-GIQPQTEEHLKILRELG-----IPIIVVLNKMDLI 135 (188)
T ss_dssp -------HHHHHHHHHH--TTSSEEEEEEETTT-BSTHHHHHHHHHHHHTT------SEEEEEETCTSS
T ss_pred -------ceeeccccee--cccccceeeeeccc-ccccccccccccccccc-----cceEEeeeeccch
Confidence 2333333333 68999999966654 46777777777776664 7899999999985
No 85
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.51 E-value=3.8e-13 Score=109.39 Aligned_cols=116 Identities=18% Similarity=0.174 Sum_probs=72.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++|+++|.+|+|||||+|++++....... .+..+...........+ ..+.+|||||...... ....+.
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~-- 70 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKH-ESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA-------LGPIYY-- 70 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc-CCccceeEEEEEEEECCEEEEEEEEECCchHHHHH-------hhHHHh--
Confidence 48999999999999999999987653211 11211222222233333 4689999999632211 111112
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++....-..-..+++.+...... ..|+++|+||+|+.
T Consensus 71 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~ 118 (162)
T cd04123 71 RDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLE 118 (162)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccc
Confidence 5789999998776532111123455566665543 37999999999985
No 86
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.51 E-value=1.1e-12 Score=111.48 Aligned_cols=117 Identities=14% Similarity=0.103 Sum_probs=70.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC---CeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG---GFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
++|+++|.+|+|||||+|++++....... .+.............. ...+.+|||||...... ....+.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~-~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~-------~~~~~~- 71 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHY-KATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGG-------MTRVYY- 71 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhh-------hHHHHh-
Confidence 58999999999999999999987542211 1111111111223333 45789999999732211 111122
Q ss_pred cCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhC--CCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFG--KQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~--~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++... +... ..++..+..... .....|+++|+||+|+.
T Consensus 72 -~~a~~~ilv~D~t~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 72 -RGAVGAIIVFDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred -CCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 6899999998876522 2221 234444544321 12347999999999985
No 87
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.51 E-value=6.6e-13 Score=108.31 Aligned_cols=116 Identities=17% Similarity=0.147 Sum_probs=70.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEE----ECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS----KGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~----~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
++|+++|.+|+|||||+|++++...... ..+..+......... .....+.+|||||..+ .......+.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~ 72 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKD-YKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE-------FDAITKAYY 72 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH-------HHHhHHHHh
Confidence 4899999999999999999998754221 111111111111222 2345799999999532 111122222
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++....-..-..++..+..... ..|+++|+||+|+..
T Consensus 73 --~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~---~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 73 --RGAQACILVFSTTDRESFEAIESWKEKVEAECG---DIPMVLVQTKIDLLD 120 (162)
T ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhccc
Confidence 689999999887753211112334444444332 279999999999853
No 88
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.51 E-value=1.4e-13 Score=120.17 Aligned_cols=129 Identities=22% Similarity=0.273 Sum_probs=95.4
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHH--H
Q 022358 33 ENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELI--K 110 (298)
Q Consensus 33 ~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i--~ 110 (298)
+..+.++|+|+|.+|+|||||.|.+.|.++..++....+|+.........+..+++++||||+-.........+..- .
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 34567999999999999999999999999999998888888877777777888999999999987654333221111 0
Q ss_pred hh-hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 111 GF-LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 111 ~~-~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
.. -+...+|+|+++++..+++ .....+++..+.+... .|.++|+||.|...
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr-~~l~p~vl~~l~~ys~----ips~lvmnkid~~k 199 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATR-TPLHPRVLHMLEEYSK----IPSILVMNKIDKLK 199 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCc-CccChHHHHHHHHHhc----CCceeeccchhcch
Confidence 11 1236899999997776533 2223455555555542 78999999999853
No 89
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.51 E-value=2.2e-13 Score=112.16 Aligned_cols=117 Identities=14% Similarity=0.208 Sum_probs=72.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
.++|+++|.+|+|||||+|++.+..... ...+..+..........++ ..+.+|||||..... .....++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-------~~~~~~~- 73 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNP-SFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFR-------TITTAYY- 73 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCc-ccccCccceEEEEEEEECCEEEEEEEEeCCchHHHH-------HHHHHHh-
Confidence 4799999999999999999999876422 1111111111112233344 478999999963211 1111222
Q ss_pred cCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++... +.. -.+++..+...... ..|+++|.||+|+.+
T Consensus 74 -~~ad~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~--~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 74 -RGAMGIILVYDITDEKSFEN-IRNWMRNIEEHASE--DVERMLVGNKCDMEE 122 (167)
T ss_pred -CCCCEEEEEEECcCHHHHHh-HHHHHHHHHHhCCC--CCcEEEEEECccccc
Confidence 5899999998876522 221 12455555554322 379999999999963
No 90
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.51 E-value=7.7e-13 Score=110.99 Aligned_cols=115 Identities=13% Similarity=0.170 Sum_probs=73.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
.+..+|+++|.+|+||||++|.+.+....... .|..........++.++.++||||.... ......+.
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~- 82 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQ----PTQHPTSEELAIGNIKFTTFDLGGHQQA-------RRLWKDYF- 82 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccC----CccccceEEEEECCEEEEEEECCCCHHH-------HHHHHHHh-
Confidence 35699999999999999999999987653221 2333344455667889999999997421 11122222
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCC--CCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~ 165 (298)
..+|+++||++..... . -......+.+.+.. ....|+++|+||+|+.
T Consensus 83 -~~ad~ii~vvD~~~~~--~-~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 83 -PEVNGIVYLVDAYDKE--R-FAESKRELDALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred -CCCCEEEEEEECCcHH--H-HHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 6899999996654311 1 11111222222211 1237999999999983
No 91
>PLN03118 Rab family protein; Provisional
Probab=99.51 E-value=2.7e-13 Score=116.21 Aligned_cols=119 Identities=20% Similarity=0.235 Sum_probs=70.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..++|+++|.+|+|||||+|++++.......... +..........++ ..+.+|||||....... ...+.
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~-------~~~~~ 83 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTI--GVDFKIKQLTVGGKRLKLTIWDTAGQERFRTL-------TSSYY 83 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCc--eeEEEEEEEEECCEEEEEEEEECCCchhhHHH-------HHHHH
Confidence 4689999999999999999999987653222211 1111122233333 57899999997433211 11112
Q ss_pred hcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++... +......+...+. .+......|+++|.||+|+..
T Consensus 84 --~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~-~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 84 --RNAQGIILVYDVTRRETFTNLSDVWGKEVE-LYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred --hcCCEEEEEEECCCHHHHHHHHHHHHHHHH-HhcCCCCCCEEEEEECccccc
Confidence 5789999997776421 1111111222232 222222368999999999853
No 92
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.51 E-value=8.7e-13 Score=108.30 Aligned_cols=116 Identities=16% Similarity=0.230 Sum_probs=71.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++|+++|.+|+|||||+|++++..... ...+..+...........+ ..+.+|||||.... ......+.
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~-- 72 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF-------RTITSSYY-- 72 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHhH-------HHHHHHHh--
Confidence 689999999999999999999876422 2112222222222333444 46899999996321 11112222
Q ss_pred CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|+++++.. +.. -..+++.+...... ..|+++|.||+|+..
T Consensus 73 ~~~~~ii~v~d~~~~~s~~~-l~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~ 121 (166)
T cd01869 73 RGAHGIIIVYDVTDQESFNN-VKQWLQEIDRYASE--NVNKLLVGNKCDLTD 121 (166)
T ss_pred CcCCEEEEEEECcCHHHHHh-HHHHHHHHHHhCCC--CCcEEEEEEChhccc
Confidence 5899999997776421 111 12345555444322 279999999999853
No 93
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.51 E-value=2e-13 Score=111.87 Aligned_cols=115 Identities=12% Similarity=0.069 Sum_probs=70.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++|+++|.+|+|||||++++++........ +.............+ ...+.+|||||...... ....+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~-- 70 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQL-STYALTLYKHNAKFEGKTILVDFWDTAGQERFQT-------MHASYY-- 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcC-CceeeEEEEEEEEECCEEEEEEEEeCCCchhhhh-------hhHHHh--
Confidence 589999999999999999999775422111 111111112222333 34678999999743211 111222
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++..........++..+.+... ..|+++|+||+|+.
T Consensus 71 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~p~ivv~nK~Dl~ 117 (161)
T cd04124 71 HKAHACILVFDVTRKITYKNLSKWYEELREYRP---EIPCIVVANKIDLD 117 (161)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEECccCc
Confidence 588999999877642211122355666655432 27999999999983
No 94
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.50 E-value=3.6e-13 Score=110.19 Aligned_cols=116 Identities=17% Similarity=0.175 Sum_probs=73.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe--EEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
+++|+++|.+|+|||||++++++..... ...++...........++. .+.+|||||......... .+ .
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~----~~---~- 70 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRD----LY---I- 70 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHH----HH---H-
Confidence 3689999999999999999999875422 1222222222223344443 577899999754332211 11 1
Q ss_pred cCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|+++++.. +. .-..++..+.+... ....|+++|+||+|+.
T Consensus 71 -~~ad~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~ 119 (163)
T cd04176 71 -KNGQGFIVVYSLVNQQTFQ-DIKPMRDQIVRVKG-YEKVPIILVGNKVDLE 119 (163)
T ss_pred -hhCCEEEEEEECCCHHHHH-HHHHHHHHHHHhcC-CCCCCEEEEEECccch
Confidence 5789999998887532 22 22345555555432 1238999999999985
No 95
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.50 E-value=8.2e-13 Score=111.71 Aligned_cols=113 Identities=15% Similarity=0.149 Sum_probs=72.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccC---------------CCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNS---------------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 102 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~---------------~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~ 102 (298)
.+|+++|.+|+|||||+|++++........ ..+.+..........++..+.+|||||..+.
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~---- 78 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADF---- 78 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHH----
Confidence 489999999999999999999631111111 1222333344456677889999999998532
Q ss_pred HHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 103 YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 103 ~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
......+. ..+|++++|++... ........++..+... ..|+++|+||+|+.
T Consensus 79 ---~~~~~~~~--~~~d~~ilV~d~~~-~~~~~~~~~~~~~~~~-----~~p~iiv~NK~Dl~ 130 (194)
T cd01891 79 ---GGEVERVL--SMVDGVLLLVDASE-GPMPQTRFVLKKALEL-----GLKPIVVINKIDRP 130 (194)
T ss_pred ---HHHHHHHH--HhcCEEEEEEECCC-CccHHHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence 11222222 58899999977764 2323333344433322 27899999999985
No 96
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.50 E-value=7.9e-13 Score=111.52 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=71.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcce-eEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEAL-RPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~-~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
++|+++|.+|+|||||++.+.+.... .+....++. ........+++ ..+.||||||... +......+.
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~- 71 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFL-NGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQER-------FRSVTHAYY- 71 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-ccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHH-------HHHhhHHHc-
Confidence 48999999999999999999987642 222222221 11111233343 4788999999521 111112222
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++....-+.-..++..+.+.... ..|+++|+||+|+.
T Consensus 72 -~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~ 119 (191)
T cd04112 72 -RDAHALLLLYDITNKASFDNIRAWLTEIKEYAQE--DVVIMLLGNKADMS 119 (191)
T ss_pred -cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccch
Confidence 5789999998776522111123455566655433 37999999999985
No 97
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.50 E-value=4.6e-13 Score=116.58 Aligned_cols=87 Identities=18% Similarity=0.272 Sum_probs=64.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 118 (298)
+|+++|.+|+|||||+|+|+|... .++.++.+|..+......+.+.++.++||||+.+...........+..+ ...+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~--~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAV--ARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHh--hccC
Confidence 689999999999999999999864 4566777787777777778899999999999876442222221222111 2688
Q ss_pred CEEEEEEeCC
Q 022358 119 DVLLYADRLD 128 (298)
Q Consensus 119 d~vl~v~~~d 128 (298)
|++++|++.+
T Consensus 79 d~il~V~D~t 88 (233)
T cd01896 79 DLILMVLDAT 88 (233)
T ss_pred CEEEEEecCC
Confidence 9999996543
No 98
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.50 E-value=9.1e-13 Score=111.25 Aligned_cols=113 Identities=17% Similarity=0.210 Sum_probs=69.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC------cccccCCCCcceeEEEEEEEEC--------------CeEEEEEeCCCCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER------VVTVNSFQSEALRPVMVSRSKG--------------GFTLNIIDTPGLVE 97 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~------~~~~~~~~~~t~~~~~~~~~~~--------------g~~l~viDTPG~~~ 97 (298)
++|+++|.+|+|||||+|++++.. .......++.|.........+. +..+.+|||||..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~- 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA- 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH-
Confidence 489999999999999999999731 1111112233443333333332 6789999999973
Q ss_pred CCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 98 AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.+...+.. ....+|++++|++... ..+..+.+.+... ... ..|+++|+||+|+.
T Consensus 80 ------~~~~~~~~--~~~~~d~vi~VvD~~~-~~~~~~~~~~~~~-~~~----~~~~iiv~NK~Dl~ 133 (192)
T cd01889 80 ------SLIRTIIG--GAQIIDLMLLVVDATK-GIQTQTAECLVIG-EIL----CKKLIVVLNKIDLI 133 (192)
T ss_pred ------HHHHHHHH--HHhhCCEEEEEEECCC-CccHHHHHHHHHH-HHc----CCCEEEEEECcccC
Confidence 12222211 1257899999966553 2333333333322 222 27999999999985
No 99
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.50 E-value=3e-13 Score=110.86 Aligned_cols=116 Identities=19% Similarity=0.234 Sum_probs=71.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
+++|+++|.+|+|||||+|+++.... .....+++..........++ ..+.+|||||...... .... +.
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~~~---~~- 70 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA----MRDL---YM- 70 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEECCCcccchh----HHHH---HH-
Confidence 46899999999999999999986543 22233333322223344444 3567999999743221 1111 11
Q ss_pred cCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.++|++++|+++++.. +.. -.+++..+..... ....|+++|+||+|+.
T Consensus 71 -~~~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~-~~~~piilv~nK~Dl~ 119 (164)
T cd04175 71 -KNGQGFVLVYSITAQSTFND-LQDLREQILRVKD-TEDVPMILVGNKCDLE 119 (164)
T ss_pred -hhCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcC-CCCCCEEEEEECCcch
Confidence 5789999998876532 222 2344454544321 1237999999999985
No 100
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.49 E-value=5.2e-13 Score=111.88 Aligned_cols=117 Identities=15% Similarity=0.233 Sum_probs=70.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEE---EECCeEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSR---SKGGFTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~---~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
+.++|+++|.+|+|||||+|++++.... ...+..+........ ...+..+.+|||||..... .....+
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~ 72 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLR-------PLWKSY 72 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcC--CcCCccccceeEEEeeccCCCceEEEEEECCCcHhHH-------HHHHHH
Confidence 3589999999999999999999876542 222222112222222 2246789999999973211 111111
Q ss_pred hhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
. ..+|++++|++.++.. +.. -...+..+..... ....|+++|+||+|+.
T Consensus 73 ~--~~~d~ii~v~D~~~~~~~~~-~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 73 T--RCTDGIVFVVDSVDVERMEE-AKTELHKITRFSE-NQGVPVLVLANKQDLP 122 (183)
T ss_pred h--ccCCEEEEEEECCCHHHHHH-HHHHHHHHHhhhh-cCCCcEEEEEECcCcc
Confidence 2 5899999997765421 111 1223333333222 1238999999999984
No 101
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.49 E-value=3.7e-13 Score=110.67 Aligned_cols=116 Identities=14% Similarity=0.126 Sum_probs=70.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcce-eEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEAL-RPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~-~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
++|+++|.+|+|||||++++.+..... ..+.+.. .........++ .++.+|||||... +......+.
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~- 72 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMA--DCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER-------FRAVTRSYY- 72 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC--CCCcccceeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHh-
Confidence 789999999999999999999875422 2222111 11112223343 4689999999632 111122222
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
.++|++++|++++...--+.-..++..+...... ..|+++|.||+|+..
T Consensus 73 -~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 73 -RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIFLIGNKADLEA 121 (166)
T ss_pred -cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 5899999998877522111122444444444322 278999999999853
No 102
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.49 E-value=3.6e-13 Score=111.04 Aligned_cols=113 Identities=13% Similarity=0.155 Sum_probs=71.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEE----EEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVM----VSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~----~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
++|+++|.+|||||||+|+++...... .. ..|..... +........+.+|||||........... +
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~--~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~---~---- 70 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEK--KY-VATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGY---Y---- 70 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CC-CCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHH---h----
Confidence 489999999999999999998654311 11 11221111 1222234578999999985543322211 1
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++...--..-..+++.+....+ ..|+++|.||+|+.
T Consensus 71 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~ 117 (166)
T cd00877 71 --IGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIK 117 (166)
T ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcc
Confidence 589999999887652211111345666666554 38999999999985
No 103
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.49 E-value=2.7e-13 Score=114.35 Aligned_cols=115 Identities=20% Similarity=0.215 Sum_probs=70.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEE-EEEEEECCe--EEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV-MVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~-~~~~~~~g~--~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
++|+++|.+|+|||||+|++++.... .+.+.++..... ......++. .+.+|||||........ ..+.
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-------~~~~- 71 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFL-VGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMS-------RIYY- 71 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcC-CcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhh-------Hhhc-
Confidence 58999999999999999999987642 222222221111 122344554 56799999974322111 1111
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++...--+....+++.+..... ..|+++|+||+|+.
T Consensus 72 -~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~ 118 (193)
T cd04118 72 -RGAKAAIVCYDLTDSSSFERAKFWVKELQNLEE---HCKIYLCGTKSDLI 118 (193)
T ss_pred -CCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCC---CCCEEEEEEccccc
Confidence 589999999887642111112345555554322 37999999999985
No 104
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.49 E-value=2e-13 Score=112.95 Aligned_cols=112 Identities=19% Similarity=0.200 Sum_probs=71.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe--EEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCC
Q 022358 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 117 (298)
Q Consensus 40 IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~ 117 (298)
|+++|.+|+|||||++++++..... ....+...........++. .+.+|||||..+....... ....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---------~~~~ 69 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE--DYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPL---------SYPD 69 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC--CCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchh---------hcCC
Confidence 5899999999999999999876422 1112222222222334443 5899999997543221111 1258
Q ss_pred CCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 118 IDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 118 ~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+|++++|++++... +......++..+.+... ..|+++|.||+|+.
T Consensus 70 ~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~ 115 (174)
T smart00174 70 TDVFLICFSVDSPASFENVKEKWYPEVKHFCP---NTPIILVGTKLDLR 115 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEecChhhh
Confidence 89999998887532 33222345666665543 38999999999985
No 105
>PRK09866 hypothetical protein; Provisional
Probab=99.49 E-value=2.9e-12 Score=122.92 Aligned_cols=73 Identities=16% Similarity=0.151 Sum_probs=49.2
Q ss_pred eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCC
Q 022358 85 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (298)
Q Consensus 85 ~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 164 (298)
.+++++||||+...... ..-+.+.+.+ ..+|+||||++.+. ..+..|..+++.+++.. +. .|+++|+||+|.
T Consensus 230 ~QIIFVDTPGIhk~~~~--~L~k~M~eqL--~eADvVLFVVDat~-~~s~~DeeIlk~Lkk~~-K~--~PVILVVNKIDl 301 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQP--HLQKMLNQQL--ARASAVLAVLDYTQ-LKSISDEEVREAILAVG-QS--VPLYVLVNKFDQ 301 (741)
T ss_pred CCEEEEECCCCCCccch--HHHHHHHHHH--hhCCEEEEEEeCCC-CCChhHHHHHHHHHhcC-CC--CCEEEEEEcccC
Confidence 35899999999864422 1111222222 68999999955442 26777888888887652 11 499999999998
Q ss_pred C
Q 022358 165 C 165 (298)
Q Consensus 165 ~ 165 (298)
.
T Consensus 302 ~ 302 (741)
T PRK09866 302 Q 302 (741)
T ss_pred C
Confidence 5
No 106
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.49 E-value=6.9e-13 Score=108.12 Aligned_cols=117 Identities=18% Similarity=0.213 Sum_probs=75.0
Q ss_pred EEEEcCCCCCHHHHHHHHhCC-CcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcC---cHHHHHHHHhhhh-
Q 022358 40 ILVMGKGGVGKSSTVNSVIGE-RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV---NYQALELIKGFLL- 114 (298)
Q Consensus 40 IllvG~~g~GKSSliN~l~g~-~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~---~~~~~~~i~~~~~- 114 (298)
|+++|.+|+|||||+|+|++. .....+...+.|.....+ ...+ .++++||||+...... .+.+...+..++.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF--NVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE--EccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 799999999999999999943 333344444444433332 2222 8999999999765321 1223333333332
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
....++++++++.+. ..+..+.++++.+.... .|+++|+||+|+.
T Consensus 79 ~~~~~~~~~v~d~~~-~~~~~~~~~~~~l~~~~-----~~vi~v~nK~D~~ 123 (170)
T cd01876 79 RENLKGVVLLIDSRH-GPTEIDLEMLDWLEELG-----IPFLVVLTKADKL 123 (170)
T ss_pred ChhhhEEEEEEEcCc-CCCHhHHHHHHHHHHcC-----CCEEEEEEchhcC
Confidence 245788888866653 23455566666666542 7999999999985
No 107
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.49 E-value=5.3e-13 Score=111.10 Aligned_cols=114 Identities=21% Similarity=0.273 Sum_probs=73.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++|+++|.+|+|||||++++.+... ...+.++...........++ ..+.+|||||.......... + .
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~--~ 70 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL-------S--Y 70 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhh-------h--c
Confidence 6899999999999999999997654 12222222221222334455 56789999998543221111 1 1
Q ss_pred CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|+++++.. +......++..+....+ ..|+++|.||+|+.
T Consensus 71 ~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~ 118 (175)
T cd01874 71 PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP---KTPFLLVGTQIDLR 118 (175)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhh
Confidence 5889999998887632 33222345666655433 27999999999984
No 108
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.48 E-value=7.6e-13 Score=112.70 Aligned_cols=114 Identities=18% Similarity=0.291 Sum_probs=73.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCc-ceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
+.|+++|..|||||||++++....... .+..+ +.........+++ ..+.+|||+|..... .....+.
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~--~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~-------~l~~~y~- 70 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCE--ACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFN-------SITSAYY- 70 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhH-------HHHHHHh-
Confidence 579999999999999999999765422 22211 1122222344555 578999999974321 1112222
Q ss_pred cCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.++|++++|+++++.. +... ..+++.+.+....+ .|+++|.||+|+.
T Consensus 71 -~~ad~iIlVfDvtd~~Sf~~l-~~w~~~i~~~~~~~--~piilVgNK~DL~ 118 (202)
T cd04120 71 -RSAKGIILVYDITKKETFDDL-PKWMKMIDKYASED--AELLLVGNKLDCE 118 (202)
T ss_pred -cCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCC--CcEEEEEECcccc
Confidence 6899999998888633 3222 34555565554333 7999999999985
No 109
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.48 E-value=3.8e-13 Score=113.04 Aligned_cols=115 Identities=15% Similarity=0.190 Sum_probs=71.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++|+++|.+|+|||||+|++.+...... ..+..+..........++ ..+.+|||||..... .....++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~-------~~~~~~~-- 70 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSES-TKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFR-------SLNNSYY-- 70 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH-------hhHHHHc--
Confidence 5899999999999999999998865321 111111112222233333 467899999963211 1111122
Q ss_pred CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.++|++++|++++... +.. -..++..+....+.. .|+++|.||+|+.
T Consensus 71 ~~~d~iilv~d~~~~~s~~~-i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~ 118 (188)
T cd04125 71 RGAHGYLLVYDVTDQESFEN-LKFWINEINRYAREN--VIKVIVANKSDLV 118 (188)
T ss_pred cCCCEEEEEEECcCHHHHHH-HHHHHHHHHHhCCCC--CeEEEEEECCCCc
Confidence 6899999998877522 211 123555555554333 7899999999985
No 110
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.48 E-value=3.5e-13 Score=113.58 Aligned_cols=116 Identities=14% Similarity=0.176 Sum_probs=70.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe--EEEEEeCCCCCCCCcCcHHHHHHHHhhhhcC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~ 116 (298)
+|+++|.+|+|||||+|++.+..... ...+++..........++. .+.+|||||...... ....+. .
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~--~ 69 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE--TYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTA-------LRDQWI--R 69 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--cCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHH-------HHHHHH--H
Confidence 58999999999999999999765422 2222222111222334443 588999999743221 111112 5
Q ss_pred CCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCC-CCCceEEEEEeCcCCC
Q 022358 117 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGK-QIWRKSLLVLTHAQLC 165 (298)
Q Consensus 117 ~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~-~~~~~~ivV~tk~D~~ 165 (298)
.+|++++|++++....-+.-..++..+...... ....|+++|+||+|+.
T Consensus 70 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 70 EGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 789999998886522111223455555554321 1237999999999985
No 111
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.48 E-value=1e-12 Score=109.18 Aligned_cols=112 Identities=15% Similarity=0.129 Sum_probs=67.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccc-----cC---------CCCcceeEEEEEEE-----ECCeEEEEEeCCCCCCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTV-----NS---------FQSEALRPVMVSRS-----KGGFTLNIIDTPGLVEAG 99 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~-----~~---------~~~~t~~~~~~~~~-----~~g~~l~viDTPG~~~~~ 99 (298)
+|+++|.+|+|||||+|++++...... .. ..+.+......... ..+..+.+|||||..+..
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 689999999999999999987532110 00 11222222222222 245678999999985432
Q ss_pred cCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 100 YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+..+. ..+|++++|++... ..+..+...+..+.. . ..|+++|+||+|+.
T Consensus 82 -------~~~~~~~--~~ad~~i~v~D~~~-~~~~~~~~~~~~~~~---~--~~~iiiv~NK~Dl~ 132 (179)
T cd01890 82 -------YEVSRSL--AACEGALLLVDATQ-GVEAQTLANFYLALE---N--NLEIIPVINKIDLP 132 (179)
T ss_pred -------HHHHHHH--HhcCeEEEEEECCC-CccHhhHHHHHHHHH---c--CCCEEEEEECCCCC
Confidence 1222222 47899999977654 233333333332222 1 27899999999984
No 112
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.48 E-value=3e-13 Score=111.44 Aligned_cols=112 Identities=21% Similarity=0.338 Sum_probs=70.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEE--------------------------------------
Q 022358 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS-------------------------------------- 81 (298)
Q Consensus 40 IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~-------------------------------------- 81 (298)
|+|+|..++|||||||+|+|.++..++.. .+|..+......
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~-~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVG-PCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSI 79 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSS-STTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCccccc-ccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhcccccc
Confidence 78999999999999999999976554433 223222211110
Q ss_pred ------------------ECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHH
Q 022358 82 ------------------KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAV 143 (298)
Q Consensus 82 ------------------~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l 143 (298)
.....+.++||||+.+......++ +.+++ ..+|++|||.+.+. .++..+...+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~---~~~~~--~~~d~vi~V~~~~~-~~~~~~~~~l~~~ 153 (168)
T PF00350_consen 80 EGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTEI---TEEYL--PKADVVIFVVDANQ-DLTESDMEFLKQM 153 (168)
T ss_dssp HTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSHH---HHHHH--STTEEEEEEEETTS-TGGGHHHHHHHHH
T ss_pred cccccccccceeEEeeccccccceEEEeCCccccchhhhHHH---HHHhh--ccCCEEEEEeccCc-ccchHHHHHHHHH
Confidence 112237999999998754433332 33333 78999999966654 3555566665554
Q ss_pred HHHhCCCCCceEEEEEeCc
Q 022358 144 TGTFGKQIWRKSLLVLTHA 162 (298)
Q Consensus 144 ~~~~~~~~~~~~ivV~tk~ 162 (298)
..... .++++|+||+
T Consensus 154 ~~~~~----~~~i~V~nk~ 168 (168)
T PF00350_consen 154 LDPDK----SRTIFVLNKA 168 (168)
T ss_dssp HTTTC----SSEEEEEE-G
T ss_pred hcCCC----CeEEEEEcCC
Confidence 44432 5699999985
No 113
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.48 E-value=3.3e-13 Score=113.69 Aligned_cols=114 Identities=18% Similarity=0.257 Sum_probs=73.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
.+|+++|.+|+|||||++++++...... ..++...........++ ..+.+|||||..+....... ..
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~---------~~ 69 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQV--YEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSL---------SY 69 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCc--cCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccc---------cc
Confidence 3799999999999999999998765321 11111111111222333 57899999997543221111 12
Q ss_pred CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|+++++.. +...+..++..+..... ..|+++|.||+|+.
T Consensus 70 ~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~---~~piilvgNK~Dl~ 117 (189)
T cd04134 70 ADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP---GVKLVLVALKCDLR 117 (189)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhc
Confidence 5889999999888743 33333346666665432 37999999999985
No 114
>PTZ00369 Ras-like protein; Provisional
Probab=99.48 E-value=8.3e-13 Score=111.20 Aligned_cols=118 Identities=18% Similarity=0.176 Sum_probs=72.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..++|+++|.+|+|||||++++.+..... ...++...........++ ..+.+|||||..+...... . +.
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~----~---~~ 74 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFID--EYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRD----Q---YM 74 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCc--CcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHH----H---Hh
Confidence 56899999999999999999999875422 121221111122223333 4678999999854332111 1 11
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|+++++...-+.-..+.+.+.+.... ...|+++|.||+|+.
T Consensus 75 --~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 75 --RTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLD 123 (189)
T ss_pred --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccc
Confidence 5889999998877532111223445555544321 137999999999984
No 115
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.48 E-value=3.2e-13 Score=111.64 Aligned_cols=113 Identities=13% Similarity=0.160 Sum_probs=70.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
..++|+++|.+|+|||||++++....... ..+ |...........+..+.+|||||.... ......+.
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~--~~~--t~g~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~-- 74 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT--TIP--TVGFNVETVTYKNVKFNVWDVGGQDKI-------RPLWRHYY-- 74 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc--ccC--CcccceEEEEECCEEEEEEECCCCHHH-------HHHHHHHh--
Confidence 56899999999999999999998654321 112 111222234456789999999998421 11111122
Q ss_pred CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCC--CCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~ 165 (298)
.++|+++||++++... +.. ..+.+.+.... ....|+++|+||+|+.
T Consensus 75 ~~a~~ii~v~D~t~~~s~~~----~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 75 TGTQGLIFVVDSADRDRIDE----ARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred ccCCEEEEEEeCCchhhHHH----HHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 5899999997766421 222 22233333221 1137999999999984
No 116
>CHL00071 tufA elongation factor Tu
Probab=99.48 E-value=2.4e-12 Score=121.03 Aligned_cols=117 Identities=10% Similarity=0.065 Sum_probs=78.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccccc---------------CCCCcceeEEEEEEEECCeEEEEEeCCCCCCC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVN---------------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 98 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~---------------~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~ 98 (298)
....++|+++|.+++|||||+|+|++......+ ...+.|.......++.++.++.++||||..
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~-- 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA-- 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH--
Confidence 446799999999999999999999975221100 112334444344455677889999999963
Q ss_pred CcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCce-EEEEEeCcCCC
Q 022358 99 GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC 165 (298)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~ 165 (298)
.+...+...+ ..+|++++|++.+. .+...+.+.+..+... + .| +|+++||+|+.
T Consensus 87 -----~~~~~~~~~~--~~~D~~ilVvda~~-g~~~qt~~~~~~~~~~-g----~~~iIvvvNK~D~~ 141 (409)
T CHL00071 87 -----DYVKNMITGA--AQMDGAILVVSAAD-GPMPQTKEHILLAKQV-G----VPNIVVFLNKEDQV 141 (409)
T ss_pred -----HHHHHHHHHH--HhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-C----CCEEEEEEEccCCC
Confidence 2333333322 57899999966553 3666667777665544 2 45 78999999985
No 117
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.48 E-value=6.2e-13 Score=108.47 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=71.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTV-NSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~-~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~ 116 (298)
++|+++|++|+|||||+|++++...... .+..+.+..............+.+|||||...... ....+. .
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~--~ 71 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRT-------LTSSYY--R 71 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhh-------hhHHHh--C
Confidence 5899999999999999999998764221 11111122222222222235789999999643211 111122 5
Q ss_pred CCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 117 TIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 117 ~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.+|++++|++++... +. .-..++..+..... ....|+++|.||+|+.
T Consensus 72 ~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 72 GAQGVILVYDVTRRDTFT-NLETWLNELETYST-NNDIVKMLVGNKIDKE 119 (161)
T ss_pred CCCEEEEEEECCCHHHHH-hHHHHHHHHHHhCC-CCCCcEEEEEECCccc
Confidence 789999998776422 21 12234555555432 2237899999999985
No 118
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.47 E-value=4.4e-13 Score=114.73 Aligned_cols=113 Identities=17% Similarity=0.128 Sum_probs=72.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccc------------------------------CCCCcceeEEEEEEEECCeEEE
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVN------------------------------SFQSEALRPVMVSRSKGGFTLN 88 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~------------------------------~~~~~t~~~~~~~~~~~g~~l~ 88 (298)
||+++|.+|+|||||+|+|++....... ...+.|........++++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999865432210 0133445555556677888999
Q ss_pred EEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 89 IIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 89 viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
++||||..+ +...+...+ ..+|++++|++... .....+......+. ..+. +++|+|+||+|+.
T Consensus 81 liDTpG~~~-------~~~~~~~~~--~~ad~~llVvD~~~-~~~~~~~~~~~~~~-~~~~---~~iIvviNK~D~~ 143 (208)
T cd04166 81 IADTPGHEQ-------YTRNMVTGA--STADLAILLVDARK-GVLEQTRRHSYILS-LLGI---RHVVVAVNKMDLV 143 (208)
T ss_pred EEECCcHHH-------HHHHHHHhh--hhCCEEEEEEECCC-CccHhHHHHHHHHH-HcCC---CcEEEEEEchhcc
Confidence 999999732 111222222 58999999966653 23333433333333 2222 4688899999985
No 119
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.47 E-value=1.1e-12 Score=112.80 Aligned_cols=117 Identities=17% Similarity=0.185 Sum_probs=72.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC---CeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG---GFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
++|+++|.+|+|||||+|++.+..... ...+..+........... ...+.+|||||..... .....+.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~-~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~-------~l~~~~~- 71 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGK-SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG-------KMLDKYI- 71 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH-------HHHHHHh-
Confidence 589999999999999999999876421 111111112222223332 3578999999963211 1122222
Q ss_pred cCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCC-CCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGK-QIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~-~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++... +. .-..++..+.+.... ....|+++|.||+|+.
T Consensus 72 -~~ad~iilV~D~t~~~s~~-~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 72 -YGAHAVFLVYDVTNSQSFE-NLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred -hcCCEEEEEEECCCHHHHH-HHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 5899999998877532 22 123456666665532 1235799999999985
No 120
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.47 E-value=1.5e-12 Score=106.79 Aligned_cols=116 Identities=15% Similarity=0.198 Sum_probs=72.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++|+++|.+|+|||||++.+++...... ..+..............+ ..+.+|||||..... .....+.
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-------~~~~~~~-- 70 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSS-HISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQ-------TITKQYY-- 70 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHH-------hhHHHHh--
Confidence 4799999999999999999998765221 111111112222334444 467899999964221 1111122
Q ss_pred CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|+++++.. +.. -..+++.+...... ..|+++|.||+|+..
T Consensus 71 ~~~~~~i~v~d~~~~~sf~~-~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~ 119 (161)
T cd04117 71 RRAQGIFLVYDISSERSYQH-IMKWVSDVDEYAPE--GVQKILIGNKADEEQ 119 (161)
T ss_pred cCCcEEEEEEECCCHHHHHH-HHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 5889999998887633 222 23455555544322 379999999999853
No 121
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.47 E-value=6.3e-13 Score=109.83 Aligned_cols=112 Identities=8% Similarity=0.056 Sum_probs=70.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 118 (298)
+|+++|.+|||||||+|++.+.... . . ..|........++.+..+.+|||||...... .....+ ..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~-~-~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~---~~~~~~------~~a 67 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--Q-P-IPTIGFNVETVEYKNLKFTIWDVGGKHKLRP---LWKHYY------LNT 67 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--C-c-CCcCceeEEEEEECCEEEEEEECCCChhcch---HHHHHh------ccC
Confidence 5899999999999999999987431 2 1 2233333344566788999999999853221 111112 578
Q ss_pred CEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 119 DVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 119 d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
|+++||++.+... ++.. ...+..+.+... ....|+++|.||+|+.
T Consensus 68 d~ii~V~D~s~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 113 (169)
T cd04158 68 QAVVFVVDSSHRDRVSEA-HSELAKLLTEKE-LRDALLLIFANKQDVA 113 (169)
T ss_pred CEEEEEEeCCcHHHHHHH-HHHHHHHhcChh-hCCCCEEEEEeCcCcc
Confidence 9999997776422 3222 222322222111 1126999999999984
No 122
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.47 E-value=1.3e-12 Score=110.94 Aligned_cols=117 Identities=14% Similarity=0.149 Sum_probs=71.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..++|+++|.+|+|||||++++.+..... ...+..+...........+ ..+.+|||||...... ....+.
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-------~~~~~~ 76 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSG-SYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRT-------ITSTYY 76 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHH-------HHHHHh
Confidence 35899999999999999999999876421 1111111111122233344 4688999999632211 111122
Q ss_pred hcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|+++.... +.. -..+++.+..... ..|+++|.||+|+.+
T Consensus 77 --~~a~~iilv~D~~~~~s~~~-~~~~~~~i~~~~~---~~piivVgNK~Dl~~ 124 (199)
T cd04110 77 --RGTHGVIVVYDVTNGESFVN-VKRWLQEIEQNCD---DVCKVLVGNKNDDPE 124 (199)
T ss_pred --CCCcEEEEEEECCCHHHHHH-HHHHHHHHHHhCC---CCCEEEEEECccccc
Confidence 5789999998776422 211 1345555554433 278999999999853
No 123
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.47 E-value=1.7e-12 Score=107.28 Aligned_cols=124 Identities=17% Similarity=0.298 Sum_probs=76.1
Q ss_pred HHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHH
Q 022358 26 LLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA 105 (298)
Q Consensus 26 ~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~ 105 (298)
.+++.... .+.++|+++|++|+|||||+|.|.+........ |...........+..+.+|||||... .
T Consensus 4 ~~~~~~~~-~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~----t~g~~~~~i~~~~~~~~~~D~~G~~~-------~ 71 (173)
T cd04155 4 LLRKLRKS-SEEPRILILGLDNAGKTTILKQLASEDISHITP----TQGFNIKTVQSDGFKLNVWDIGGQRA-------I 71 (173)
T ss_pred HHHHhhcc-CCccEEEEEccCCCCHHHHHHHHhcCCCcccCC----CCCcceEEEEECCEEEEEEECCCCHH-------H
Confidence 44555543 458999999999999999999999975432221 22222334556788999999999732 1
Q ss_pred HHHHHhhhhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 106 LELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 106 ~~~i~~~~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
......+. ..+|++++|++..... +......+...+..... ...|+++++||+|+.
T Consensus 72 ~~~~~~~~--~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~ 128 (173)
T cd04155 72 RPYWRNYF--ENTDCLIYVIDSADKKRLEEAGAELVELLEEEKL--AGVPVLVFANKQDLA 128 (173)
T ss_pred HHHHHHHh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhh--cCCCEEEEEECCCCc
Confidence 11222222 5889999997665421 22111122222222111 237999999999984
No 124
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.47 E-value=3.8e-13 Score=112.75 Aligned_cols=114 Identities=19% Similarity=0.239 Sum_probs=69.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE---CCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK---GGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~---~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
++|+++|.+|+|||||+|++++..... ...++........... ....+.+|||||..+.. .++.. .
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~--~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~-~ 69 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPE--EYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYD--------RLRPL-S 69 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCC--CCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHH--------HHHHH-h
Confidence 589999999999999999999876421 1111111111111222 23478999999963211 11111 1
Q ss_pred cCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..++|++++|++++... +......++..+.... . ..|+++|.||+|+.
T Consensus 70 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~piilv~nK~Dl~ 118 (187)
T cd04132 70 YPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC-P--GTPIMLVGLKTDLR 118 (187)
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEeChhhh
Confidence 26899999998887522 2222223444444332 2 27999999999985
No 125
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.47 E-value=4.6e-13 Score=110.76 Aligned_cols=114 Identities=21% Similarity=0.227 Sum_probs=72.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe--EEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++|+++|.+|+|||||+|++.+..... ...++...........++. .+.+|||||..+....... ..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---------~~ 69 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPE--EYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPL---------SY 69 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccc---------cC
Confidence 589999999999999999999876422 1212222122223334443 4779999997653322111 12
Q ss_pred CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++... +......++..+... .. ..|+++|+||+|+.
T Consensus 70 ~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~--~~piivv~nK~Dl~ 117 (174)
T cd04135 70 PMTDVFLICFSVVNPASFQNVKEEWVPELKEY-AP--NVPYLLVGTQIDLR 117 (174)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CC--CCCEEEEeEchhhh
Confidence 5789999998877532 333333455556544 22 38999999999984
No 126
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.46 E-value=5e-13 Score=111.62 Aligned_cols=114 Identities=17% Similarity=0.169 Sum_probs=73.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++|+++|.+|+|||||++++.+.... ..+.++...........++ ..+.+|||+|...... ++. ...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~--------~~~-~~~ 70 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP--ETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDN--------VRP-LCY 70 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC--CCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhh--------cch-hhc
Confidence 68999999999999999999987542 2222222111122233344 4688999999743221 111 112
Q ss_pred CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.++|++++|++++... +......++..+.+..+. .|+++|.||+|+.
T Consensus 71 ~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~---~~iilVgnK~DL~ 118 (178)
T cd04131 71 PDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPN---TKVLLVGCKTDLR 118 (178)
T ss_pred CCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCC---CCEEEEEEChhhh
Confidence 6899999999887532 322224566777666432 7999999999984
No 127
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.46 E-value=1.3e-12 Score=107.77 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=72.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
+++|+++|.+|+||||++|++.+.... ....+++..........++ ..+.+|||||........+. +.
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~- 70 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFI--ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMREL-------YI- 70 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHH-------HH-
Confidence 368999999999999999999977642 2222222222122223333 57789999997543321111 11
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|+++++...-+....+.+.+.+.... ...|+++|.||.|+.+
T Consensus 71 -~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~D~~~ 120 (168)
T cd04177 71 -KSGQGFLLVYSVTSEASLNELGELREQVLRIKDS-DNVPMVLVGNKADLED 120 (168)
T ss_pred -hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEEChhccc
Confidence 4689999998777532111223445555554322 2379999999999853
No 128
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.46 E-value=2.6e-12 Score=105.12 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=69.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcc-eeEEEEEEE---ECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRS---KGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~---~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
++|+++|.+|||||||++++.+........+..+. ......... .....+.+|||||.. ........++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-------~~~~~~~~~~ 73 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE-------LYSDMVSNYW 73 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH-------HHHHHHHHHh
Confidence 58999999999999999999864211222222221 111111122 234689999999962 1111222233
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++....-..-..+++.+.... ...|+++|.||+|+.+
T Consensus 74 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 74 --ESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLAD 121 (164)
T ss_pred --CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccc
Confidence 68999999988764211111234455554442 2379999999999853
No 129
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.46 E-value=5.6e-13 Score=108.65 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=68.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 118 (298)
+|+++|.+|+|||||++++.+..... .... .|...........+..+.+|||||..... .....+. ..+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~-~~~~-~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~--~~~ 69 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQS-QIIV-PTVGFNVESFEKGNLSFTAFDMSGQGKYR-------GLWEHYY--KNI 69 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCc-ceec-CccccceEEEEECCEEEEEEECCCCHhhH-------HHHHHHH--ccC
Confidence 58999999999999999999864211 1111 11112222345677899999999974321 1112222 589
Q ss_pred CEEEEEEeCCCCC-CCHHHHHHHHHHHHHhC-CCCCceEEEEEeCcCCC
Q 022358 119 DVLLYADRLDAYR-VDDLDRQIIKAVTGTFG-KQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 119 d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~-~~~~~~~ivV~tk~D~~ 165 (298)
|++++|++..... +. .....+..+..... .....|+++|+||+|+.
T Consensus 70 d~ii~v~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 117 (162)
T cd04157 70 QGIIFVIDSSDRLRLV-VVKDELELLLNHPDIKHRRVPILFFANKMDLP 117 (162)
T ss_pred CEEEEEEeCCcHHHHH-HHHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence 9999996665421 11 11223333322211 11248999999999985
No 130
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.46 E-value=4.7e-13 Score=109.13 Aligned_cols=112 Identities=12% Similarity=0.147 Sum_probs=69.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 118 (298)
+|+++|.+|+|||||+|++....... ..+ |........++.+..+.+|||||..+.. ...+.++ ..+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~--~~~ 67 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT--TIP--TIGFNVETVTYKNLKFQVWDLGGQTSIR-------PYWRCYY--SNT 67 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC--cCC--ccCcCeEEEEECCEEEEEEECCCCHHHH-------HHHHHHh--cCC
Confidence 58999999999999999997765422 111 2222233455677899999999984321 1112222 589
Q ss_pred CEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 119 DVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 119 d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
|++++|++.+... +......+...+..... ...|+++|+||+|+.
T Consensus 68 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~ 113 (158)
T cd04151 68 DAIIYVVDSTDRDRLGTAKEELHAMLEEEEL--KGAVLLVFANKQDMP 113 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhh--cCCcEEEEEeCCCCC
Confidence 9999997766421 11112222222222111 138999999999984
No 131
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.46 E-value=7.6e-13 Score=108.62 Aligned_cols=116 Identities=22% Similarity=0.223 Sum_probs=71.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe--EEEEEeCCCCCCCCcCcHHHHHHHHhhhhcC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~ 116 (298)
+|+++|.+|+|||||++++++... ...+.+++..........++. .+.+|||||...... ......+ .
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--~~~~~~~------~ 70 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT--EQLERSI------R 70 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCccccc--chHHHHH------H
Confidence 589999999999999999987543 222333322222223334444 578999999864211 1122222 4
Q ss_pred CCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 117 TIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 117 ~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.+|++++|++++... +. .-..++..+..........|+++|.||+|+.
T Consensus 71 ~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 71 WADGFVLVYSITDRSSFD-EISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred hCCEEEEEEECCCHHHHH-HHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 789999998877522 21 1233455555543212238999999999984
No 132
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.46 E-value=1.4e-12 Score=108.23 Aligned_cols=116 Identities=17% Similarity=0.175 Sum_probs=72.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
.++|+++|..|+|||||++.+.+..... ...++...........++ ..+.+|||||..+... ....+.
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------l~~~~~- 71 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPD--YHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTA-------MRDQYM- 71 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCC--CcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHH-------HhHHHh-
Confidence 4799999999999999999999776422 111222111222334455 4688999999753221 111112
Q ss_pred cCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|+++++.. +... ..+.+.+.+... ....|+++|.||+|+.
T Consensus 72 -~~~d~~ilv~d~~~~~Sf~~~-~~~~~~i~~~~~-~~~~piilvgNK~Dl~ 120 (172)
T cd04141 72 -RCGEGFIICYSVTDRHSFQEA-SEFKKLITRVRL-TEDIPLVLVGNKVDLE 120 (172)
T ss_pred -hcCCEEEEEEECCchhHHHHH-HHHHHHHHHhcC-CCCCCEEEEEEChhhh
Confidence 5789999998887633 2222 234455555422 1237999999999985
No 133
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.46 E-value=1.7e-12 Score=104.18 Aligned_cols=117 Identities=18% Similarity=0.263 Sum_probs=72.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
+++|+++|.+|+|||||+|++++.. ......+..+..........++ ..+.+|||||..+...... ...
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~----~~~---- 71 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRR----LYY---- 71 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHH----HHH----
Confidence 3689999999999999999999987 4444445555554444456667 6789999999643321111 111
Q ss_pred cCCCCEEEEEEeCCCC--CCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAY--RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~--~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..++.+++++++... .+..........+...... ..|+++|+||+|+.
T Consensus 72 -~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~ 121 (161)
T TIGR00231 72 -RAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLR 121 (161)
T ss_pred -hhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCC
Confidence 345555555444321 1122222334444444322 37999999999985
No 134
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.46 E-value=7.8e-13 Score=107.28 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=73.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~ 116 (298)
+|+++|++|+|||||+|++++... .....+++...........+ ..+.+|||||..... .....++ .
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~--~ 69 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF--VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFS-------AMRDLYI--R 69 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHH--h
Confidence 589999999999999999998762 23333333333333344443 578899999974311 1111222 4
Q ss_pred CCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 117 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 117 ~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..|++++|++++....-..-..+...+....+. ...|+++|+||+|...
T Consensus 70 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 70 QGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLEN 118 (160)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccc
Confidence 789999998776522111223444445444431 2389999999999863
No 135
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.45 E-value=8.8e-13 Score=109.72 Aligned_cols=114 Identities=11% Similarity=0.163 Sum_probs=70.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
...++|+++|..|+|||||++.+...... ...+ |...........+..+.+|||||.... ......+.
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~l~l~D~~G~~~~-------~~~~~~~~- 78 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV--TTIP--TIGFNVETVTYKNISFTVWDVGGQDKI-------RPLWRHYY- 78 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC--CcCC--ccccceEEEEECCEEEEEEECCCChhh-------HHHHHHHh-
Confidence 35699999999999999999999644331 1112 222222334567789999999997432 11112222
Q ss_pred cCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCC--CCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQ--IWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~--~~~~~ivV~tk~D~~ 165 (298)
.++|+++||++++... +.. ..+.+.+..... ...|+++|+||+|+.
T Consensus 79 -~~ad~ii~v~D~t~~~s~~~----~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 127 (175)
T smart00177 79 -TNTQGLIFVVDSNDRDRIDE----AREELHRMLNEDELRDAVILVFANKQDLP 127 (175)
T ss_pred -CCCCEEEEEEECCCHHHHHH----HHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence 6899999997766421 222 222222222110 137999999999984
No 136
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.45 E-value=8.5e-13 Score=107.38 Aligned_cols=112 Identities=13% Similarity=0.172 Sum_probs=70.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 118 (298)
+|+++|.+|+|||||+|++++...... ..|.........+.+..+.+|||||...... ....++ ..+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~--~~~ 67 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTT----IPTIGFNVETVEYKNVSFTVWDVGGQDKIRP-------LWKHYY--ENT 67 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCC----CCCcCcceEEEEECCEEEEEEECCCChhhHH-------HHHHHh--ccC
Confidence 589999999999999999998873221 1122233344566788999999999753211 111122 578
Q ss_pred CEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 119 DVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 119 d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
|++++|+++.... +... ...+..+..... ....|+++|+||+|+.
T Consensus 68 ~~~i~v~D~~~~~~~~~~-~~~~~~~~~~~~-~~~~piiiv~nK~D~~ 113 (158)
T cd00878 68 NGIIFVVDSSDRERIEEA-KEELHKLLNEEE-LKGVPLLIFANKQDLP 113 (158)
T ss_pred CEEEEEEECCCHHHHHHH-HHHHHHHHhCcc-cCCCcEEEEeeccCCc
Confidence 9999997776421 2222 222222222111 1237999999999985
No 137
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.45 E-value=2e-13 Score=105.95 Aligned_cols=115 Identities=17% Similarity=0.145 Sum_probs=67.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcc---cccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVV---TVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~---~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
||+|+|..|+|||||+++|++.... ......+.+..............+.++|++|........... +
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~---~------ 71 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFF---L------ 71 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHH---H------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccch---h------
Confidence 7999999999999999999988754 111222222222222222233358899999984322222111 2
Q ss_pred CCCCEEEEEEeCCCCCCCHHH-HHHHHHHHHHhCCCCCceEEEEEeCcC
Q 022358 116 KTIDVLLYADRLDAYRVDDLD-RQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~tk~D 163 (298)
..+|++++|++++... +-.. .+++.++....+.....|+++|.||.|
T Consensus 72 ~~~d~~ilv~D~s~~~-s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 72 KKADAVILVYDLSDPE-SLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHSCEEEEEEECCGHH-HHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred hcCcEEEEEEcCCChH-HHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 4789999998777522 1112 234445555443222389999999987
No 138
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.45 E-value=2.7e-12 Score=106.04 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=71.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
.++|+++|.+|+|||||++++++...... ..+..+...........+ ..+.+|||||..+.. .. ....+.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~~---~~~~~~- 73 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPER-TEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR---KS---MVQHYY- 73 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCc-cccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH---Hh---hHHHhh-
Confidence 47999999999999999999998654211 111111111122233344 578999999963211 01 111112
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++....-..-..+++.+..... ....|+++|.||+|+.
T Consensus 74 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~ 122 (170)
T cd04115 74 -RNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLR 122 (170)
T ss_pred -cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccch
Confidence 688999999888753211122344444544321 1237999999999985
No 139
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.44 E-value=2.4e-12 Score=111.05 Aligned_cols=113 Identities=15% Similarity=0.243 Sum_probs=73.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 117 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~ 117 (298)
++|+++|.+|+|||||++++++..... . ..|.....+...+....+.+|||||........ .. + ...
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~--~--~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~----~~---~--~~~ 67 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD--T--VSTVGGAFYLKQWGPYNISIWDTAGREQFHGLG----SM---Y--CRG 67 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC--C--CCccceEEEEEEeeEEEEEEEeCCCcccchhhH----HH---H--hcc
Confidence 589999999999999999999877532 1 123323333344556789999999975332111 11 1 168
Q ss_pred CCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 118 IDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 118 ~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
+|++++|++++... +.... .++..+.+.... ..|+++|.||+|+..
T Consensus 68 ad~~IlV~Dvt~~~Sf~~l~-~~~~~l~~~~~~--~~piIlVgNK~DL~~ 114 (220)
T cd04126 68 AAAVILTYDVSNVQSLEELE-DRFLGLTDTANE--DCLFAVVGNKLDLTE 114 (220)
T ss_pred CCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCC--CCcEEEEEECccccc
Confidence 99999998887532 32222 233334443333 278999999999853
No 140
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.44 E-value=7.7e-13 Score=111.67 Aligned_cols=116 Identities=17% Similarity=0.219 Sum_probs=72.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..++|+++|..|+|||||++.+....... .+.++...........++ ..+.+|||||..... .++..
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~--------~l~~~- 70 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPK--EYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYD--------RLRTL- 70 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCc--CCCCceEeeeEEEEEECCEEEEEEEEECCCchhhh--------hhhhh-
Confidence 45899999999999999999999765421 111211111111223344 468899999984322 12211
Q ss_pred hcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
...++|++++|+++++.. +......++..+..... ..|+++|.||.|+.
T Consensus 71 ~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~---~~piilvgNK~DL~ 120 (191)
T cd01875 71 SYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP---NVPILLVGTKKDLR 120 (191)
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEeChhhh
Confidence 126899999999987633 33222235555554432 38999999999984
No 141
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.44 E-value=3.4e-12 Score=107.24 Aligned_cols=114 Identities=15% Similarity=0.218 Sum_probs=73.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
.+..+|+++|++|||||||+|++.+...... ..|..+......+++..+.++||||... .......+.
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~----~~T~~~~~~~i~~~~~~~~l~D~~G~~~-------~~~~~~~~~- 84 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQH----VPTLHPTSEELTIGNIKFKTFDLGGHEQ-------ARRLWKDYF- 84 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCccc----CCccCcceEEEEECCEEEEEEECCCCHH-------HHHHHHHHh-
Confidence 4679999999999999999999998764221 1233334455667788999999999632 111222222
Q ss_pred cCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCC--CCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++..... +.. ....+.+.... ....|+++|+||+|+.
T Consensus 85 -~~ad~iilV~D~~~~~s~~~----~~~~~~~i~~~~~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 85 -PEVDGIVFLVDAADPERFQE----SKEELDSLLSDEELANVPFLILGNKIDLP 133 (190)
T ss_pred -ccCCEEEEEEECCcHHHHHH----HHHHHHHHHcCccccCCCEEEEEeCCCCC
Confidence 5789999997665321 211 12233333221 1238999999999984
No 142
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.44 E-value=1.7e-12 Score=107.51 Aligned_cols=114 Identities=18% Similarity=0.198 Sum_probs=69.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcc-eeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
+|+++|.+|+|||||+|++++.... ..+.++. ..........+| .++.+|||||...... ....+ .
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~--~ 70 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD--KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKC-------IASTY--Y 70 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHh-------hHHHH--h
Confidence 7999999999999999999987542 2222221 111112233343 5789999999742211 11111 1
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-hCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGT-FGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~-~~~~~~~~~ivV~tk~D~~ 165 (298)
.++|++++|++++.........+++..+.+. ..+. .|+++|.||+|+.
T Consensus 71 ~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--~~iilVgnK~Dl~ 119 (170)
T cd04108 71 RGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSS--VLLFLVGTKKDLS 119 (170)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--CeEEEEEEChhcC
Confidence 6899999998876522112223455554433 2222 5799999999985
No 143
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.44 E-value=1.3e-12 Score=108.27 Aligned_cols=114 Identities=22% Similarity=0.239 Sum_probs=73.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++++++|.+|+|||||++++++... .....++...........++ ..+.+|||||....... +.. ..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~-~~ 69 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY--PTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKL--------RPL-CY 69 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccc--------ccc-cc
Confidence 5899999999999999999987653 22333333222222334444 46789999998433221 111 12
Q ss_pred CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|+++++.. +......++..+..... ..|+++|.||+|+.
T Consensus 70 ~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 117 (173)
T cd04130 70 PDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP---KAPIILVGTQADLR 117 (173)
T ss_pred CCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhhc
Confidence 5889999998887532 33333345666654322 27999999999985
No 144
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.44 E-value=4.8e-12 Score=105.24 Aligned_cols=118 Identities=16% Similarity=0.115 Sum_probs=70.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE------------CCeEEEEEeCCCCCCCCcCcHH
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK------------GGFTLNIIDTPGLVEAGYVNYQ 104 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~------------~g~~l~viDTPG~~~~~~~~~~ 104 (298)
.++|+++|.+|+|||||+|++.+..... ...+..+.........+ ....+.+|||||.. +
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-------~ 75 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNP-KFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE-------R 75 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH-------H
Confidence 4899999999999999999999875421 11111111111111111 23578999999952 2
Q ss_pred HHHHHHhhhhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 105 ALELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 105 ~~~~i~~~~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
+......++ ..+|++++|++++... +.. -..++..+..... ....|+++|.||+|+.+
T Consensus 76 ~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 76 FRSLTTAFF--RDAMGFLLIFDLTNEQSFLN-VRNWMSQLQTHAY-CENPDIVLCGNKADLED 134 (180)
T ss_pred HHHHHHHHh--CCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcC-CCCCcEEEEEeCccchh
Confidence 222222222 5899999998876522 111 1344455544321 11278999999999853
No 145
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.44 E-value=1.1e-12 Score=108.99 Aligned_cols=115 Identities=9% Similarity=0.078 Sum_probs=71.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
...+|+++|.+|+|||||++++++....... .|.........+.+..+.+|||||.... ......+.
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~-- 80 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTS----PTIGSNVEEIVYKNIRFLMWDIGGQESL-------RSSWNTYY-- 80 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcC----CccccceEEEEECCeEEEEEECCCCHHH-------HHHHHHHh--
Confidence 4689999999999999999999876543221 2222333455667889999999997421 11112222
Q ss_pred CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.++|++++|++.+... +... .+.+..+.+..+ ....|+++++||+|+.
T Consensus 81 ~~~d~vi~V~D~s~~~~~~~~-~~~l~~~~~~~~-~~~~p~viv~NK~Dl~ 129 (174)
T cd04153 81 TNTDAVILVIDSTDRERLPLT-KEELYKMLAHED-LRKAVLLVLANKQDLK 129 (174)
T ss_pred hcCCEEEEEEECCCHHHHHHH-HHHHHHHHhchh-hcCCCEEEEEECCCCC
Confidence 5899999997665421 1111 122222211111 1237999999999984
No 146
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.44 E-value=2.4e-12 Score=105.80 Aligned_cols=118 Identities=14% Similarity=0.198 Sum_probs=72.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
...+|+++|.+|+|||||++++.+..... ...+..+.........+.+ ..+.+|||||..... .....++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~ 77 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFR-------SITQSYY 77 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHh
Confidence 34899999999999999999999765421 1111111222222344555 457899999974221 1112222
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++...-...-..++..+....... .|+++|.||+|+.
T Consensus 78 --~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~~i~v~NK~D~~ 125 (169)
T cd04114 78 --RSANALILTYDITCEESFRCLPEWLREIEQYANNK--VITILVGNKIDLA 125 (169)
T ss_pred --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccc
Confidence 68999999977654211011124455555554333 7899999999985
No 147
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.44 E-value=1.1e-12 Score=109.08 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=71.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++|+++|.+|+|||||+.++++.... ..+.++...........++ ..+.+|||||........ ..+.
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~-- 70 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR-------PLSY-- 70 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhh-------hhhc--
Confidence 68999999999999999999976532 2222222111122233444 568899999974332111 1111
Q ss_pred CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.++|++++|++++... +......++..+..... ..|+++|.||+|+.
T Consensus 71 ~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilvgnK~Dl~ 118 (174)
T cd01871 71 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR 118 (174)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhc
Confidence 5899999998887532 33222345555555432 37999999999984
No 148
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.44 E-value=9.7e-13 Score=107.68 Aligned_cols=113 Identities=11% Similarity=0.173 Sum_probs=68.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 117 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~ 117 (298)
++|+++|.+|+|||||++++...... ...+ |..............+.+|||||... .......+. .+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~--~~~p--t~g~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~--~~ 67 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK-------IRPLWRHYF--QN 67 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--ccCC--CCCcceEEEEECCEEEEEEECCCCHh-------HHHHHHHHh--cC
Confidence 48999999999999999999755432 1122 11122223455678899999999742 111112222 68
Q ss_pred CCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 118 IDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 118 ~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+|+++||++.+... +......+.+.+...... ..|+++|+||+|+.
T Consensus 68 ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~ 114 (159)
T cd04150 68 TQGLIFVVDSNDRERIGEAREELQRMLNEDELR--DAVLLVFANKQDLP 114 (159)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhc--CCCEEEEEECCCCC
Confidence 99999997776422 222222222222221111 27999999999984
No 149
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.44 E-value=1.9e-12 Score=105.59 Aligned_cols=116 Identities=17% Similarity=0.215 Sum_probs=69.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++|+++|.+|+|||||+|++++.... ....+++..........+ +..+.+|||||..+... ....++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~-- 69 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAA-------IRDNYH-- 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc--cccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhH-------HHHHHh--
Confidence 48999999999999999999977542 222222222112222333 35789999999753221 111122
Q ss_pred CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
...|++++|++++... +.. -..+...+..... ....|+++|+||+|+.+
T Consensus 70 ~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 70 RSGEGFLLVFSITDMESFTA-TAEFREQILRVKD-DDNVPLLLVGNKCDLED 119 (164)
T ss_pred hcCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence 5779999997776422 111 1234444444321 12389999999999853
No 150
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.44 E-value=1.3e-12 Score=112.77 Aligned_cols=119 Identities=13% Similarity=0.111 Sum_probs=73.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTV-NSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~-~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
...++|+++|..|+|||||+++++....... .+..+.+.....+........+.+|||||......... .+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~- 82 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD-------GY- 82 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhH-------HH-
Confidence 5679999999999999999999876653211 11111111111121222346889999999854321111 11
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
...+|++|+|++++....-..-..+++.+.+... ..|+++|.||+|+.
T Consensus 83 -~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~---~~piilvgNK~Dl~ 130 (219)
T PLN03071 83 -YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVK 130 (219)
T ss_pred -cccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhhh
Confidence 1588999999888753211122345666665532 37999999999984
No 151
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.44 E-value=1e-12 Score=110.11 Aligned_cols=114 Identities=13% Similarity=0.179 Sum_probs=71.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
...++|+++|.+|+|||||++++....... ..+ |...........+..+.+|||||.... ......+.
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~--~~~--T~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~- 82 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT--TIP--TIGFNVETVEYKNLKFTMWDVGGQDKL-------RPLWRHYY- 82 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--cCC--ccccceEEEEECCEEEEEEECCCCHhH-------HHHHHHHh-
Confidence 356999999999999999999997554321 111 222223345567789999999997321 11111122
Q ss_pred cCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCC--CCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQ--IWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~--~~~~~ivV~tk~D~~ 165 (298)
.++|+++||+++++.. +.... +.+.+..... ...|+++|+||.|+.
T Consensus 83 -~~ad~iI~v~D~t~~~s~~~~~----~~l~~~~~~~~~~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 83 -QNTNGLIFVVDSNDRERIGDAR----EELERMLSEDELRDAVLLVFANKQDLP 131 (182)
T ss_pred -cCCCEEEEEEeCCCHHHHHHHH----HHHHHHHhCHhhcCCCEEEEEeCCCCC
Confidence 6899999997776422 22222 2233322211 137999999999984
No 152
>PLN03110 Rab GTPase; Provisional
Probab=99.43 E-value=6.5e-12 Score=108.14 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=74.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..++|+++|.+|+|||||++++++...... ..+.............++ ..+.+|||||... +......+.
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~-~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~ 82 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLE-SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER-------YRAITSAYY 82 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCceeEEEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHh
Confidence 357999999999999999999998764221 111111122222334444 4789999999632 222222222
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++.....+.-..++..+......+ .|+++|+||+|+.
T Consensus 83 --~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~piiiv~nK~Dl~ 130 (216)
T PLN03110 83 --RGAVGALLVYDITKRQTFDNVQRWLRELRDHADSN--IVIMMAGNKSDLN 130 (216)
T ss_pred --CCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCC--CeEEEEEEChhcc
Confidence 58999999988765221122234556666554333 7999999999984
No 153
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.43 E-value=1e-12 Score=110.10 Aligned_cols=116 Identities=16% Similarity=0.150 Sum_probs=75.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..++|+++|.+|+|||||++++.+.... ..+.++...........++ ..+.+|||+|..... .++..
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~--~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~--------~~~~~- 72 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD--------NVRPL- 72 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCC--CccCCceeeeeEEEEEECCEEEEEEEEECCCchhhH--------hhhhh-
Confidence 4689999999999999999999987542 2222222111122233343 468999999973221 12111
Q ss_pred hcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
...++|++++|++++... +......+++.+.+..+ ..|+++|.||+|+.
T Consensus 73 ~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~ 122 (182)
T cd04172 73 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLR 122 (182)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEeEChhhh
Confidence 126899999999887632 32222456677766543 27999999999984
No 154
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.43 E-value=5.6e-12 Score=104.00 Aligned_cols=112 Identities=13% Similarity=0.120 Sum_probs=69.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 118 (298)
+|+++|.+|||||||+|.+.+....... .|...........+..+.++||||... .......+. ..+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~----~t~g~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~--~~a 67 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVA----PTVGFTPTKLRLDKYEVCIFDLGGGAN-------FRGIWVNYY--AEA 67 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCcccc----CcccceEEEEEECCEEEEEEECCCcHH-------HHHHHHHHH--cCC
Confidence 5899999999999999999986321111 122222334566788999999999632 111222222 689
Q ss_pred CEEEEEEeCCCCCCCHH-HHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 119 DVLLYADRLDAYRVDDL-DRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 119 d~vl~v~~~d~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
|+++||++..... +-. -..++..+..... ....|+++|+||+|+.
T Consensus 68 ~~ii~V~D~s~~~-s~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~ 113 (167)
T cd04161 68 HGLVFVVDSSDDD-RVQEVKEILRELLQHPR-VSGKPILVLANKQDKK 113 (167)
T ss_pred CEEEEEEECCchh-HHHHHHHHHHHHHcCcc-ccCCcEEEEEeCCCCc
Confidence 9999997665422 111 1223333332211 1237999999999984
No 155
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.43 E-value=1.2e-12 Score=108.23 Aligned_cols=114 Identities=15% Similarity=0.188 Sum_probs=71.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
.+|+++|.+|+|||||++++.+..... ...++...........++ ..+.+|||||..+...... . ..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~--~~ 70 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRP-------L--SY 70 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccc-------c--cc
Confidence 589999999999999999999875422 111211111122233444 3679999999743221111 0 11
Q ss_pred CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.++|++++|+++++.. +......++..+..... ..|+++|.||+|+.
T Consensus 71 ~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 118 (175)
T cd01870 71 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLR 118 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhcc
Confidence 5889999998888532 22222334555554432 27999999999985
No 156
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.43 E-value=1.1e-12 Score=106.79 Aligned_cols=112 Identities=16% Similarity=0.186 Sum_probs=66.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE-CCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 117 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~ 117 (298)
+|+++|.+|+|||||+|++++....... + |.......... .+..+.+|||||.... ......+. ..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~--~--t~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~~~~~~--~~ 67 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTI--P--TVGFNVEMLQLEKHLSLTVWDVGGQEKM-------RTVWKCYL--EN 67 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccccc--C--ccCcceEEEEeCCceEEEEEECCCCHhH-------HHHHHHHh--cc
Confidence 5899999999999999999988753221 1 11111112222 3468999999997421 11112222 57
Q ss_pred CCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 118 IDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 118 ~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+|++++|++.+... +......+.+.+..... ...|+++|+||+|+.
T Consensus 68 ~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~ 114 (160)
T cd04156 68 TDGLVYVVDSSDEARLDESQKELKHILKNEHI--KGVPVVLLANKQDLP 114 (160)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHhchhh--cCCCEEEEEECcccc
Confidence 89999997665421 22222222222222111 238999999999984
No 157
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.43 E-value=2e-12 Score=107.81 Aligned_cols=114 Identities=17% Similarity=0.201 Sum_probs=74.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++|+++|.+|+|||||+.++...... ..+.++...........++ .++.+|||+|..........+ .
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~--~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~---------~ 70 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLS---------Y 70 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhh---------c
Confidence 58999999999999999999977642 1222222111222233344 478999999985443322211 1
Q ss_pred CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.++|++++|++++... +......++..+....+ ..|+++|.||+|+.
T Consensus 71 ~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~ 118 (176)
T cd04133 71 RGADVFVLAFSLISRASYENVLKKWVPELRHYAP---NVPIVLVGTKLDLR 118 (176)
T ss_pred CCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeChhhc
Confidence 5899999999998633 33222356666665533 28999999999995
No 158
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.42 E-value=3.4e-12 Score=107.61 Aligned_cols=115 Identities=16% Similarity=0.215 Sum_probs=75.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCC-CcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQ-SEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~-~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
..++|+++|..|+|||||++++.+.... .... ..+..........++ ..+.+|||||..... .....+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~-------~l~~~~ 75 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTE--SPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFC-------TIFRSY 75 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHH
Confidence 4589999999999999999999976431 1111 111222222334455 578899999984221 111122
Q ss_pred hhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
. ..+|++|+|++++... +... ..++..+.+... ..|+++|.||+|+.
T Consensus 76 ~--~~ad~illVfD~t~~~Sf~~~-~~w~~~i~~~~~---~~piilVGNK~DL~ 123 (189)
T cd04121 76 S--RGAQGIILVYDITNRWSFDGI-DRWIKEIDEHAP---GVPKILVGNRLHLA 123 (189)
T ss_pred h--cCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCC---CCCEEEEEECccch
Confidence 2 6899999999887633 3333 456666765543 38999999999984
No 159
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.42 E-value=6.3e-12 Score=105.21 Aligned_cols=115 Identities=11% Similarity=0.144 Sum_probs=72.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
...++|+++|..|||||||++++....... ..+ |...........+..+.+|||||... .......+.
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~--~~p--t~g~~~~~~~~~~~~~~i~D~~Gq~~-------~~~~~~~~~- 82 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQDK-------IRPLWRHYF- 82 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc--ccC--CcceeEEEEEECCEEEEEEECCCCHH-------HHHHHHHHh-
Confidence 456999999999999999999998654322 112 22222334566788999999999621 111112222
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCC--CCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQ--IWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~tk~D~~ 165 (298)
.++|+++||++++... . -......+.+.+... ...|+++|+||.|+.
T Consensus 83 -~~a~~iI~V~D~s~~~--s-~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 83 -QNTQGLIFVVDSNDRD--R-VVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred -ccCCEEEEEEeCCcHH--H-HHHHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 6899999997765421 1 112223333333211 137999999999984
No 160
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.42 E-value=1.3e-12 Score=113.49 Aligned_cols=117 Identities=13% Similarity=0.154 Sum_probs=74.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
...++|+++|..|||||||++.+++.... ..+.++...........++ ..+.+|||+|..... .+...
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~--~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~--------~~~~~ 80 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYD--------NVRPL 80 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCC--CCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhH--------HHHHH
Confidence 34689999999999999999999977532 1222221111112233333 478999999963221 11111
Q ss_pred hhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
...++|++++|++++... +......++..+.+..+. .|+++|.||+|+.
T Consensus 81 -~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~---~piilVgNK~DL~ 130 (232)
T cd04174 81 -CYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPS---TRILLIGCKTDLR 130 (232)
T ss_pred -HcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCC---CCEEEEEECcccc
Confidence 126899999999887632 222224566667665432 7999999999984
No 161
>COG2262 HflX GTPases [General function prediction only]
Probab=99.42 E-value=4.3e-12 Score=115.42 Aligned_cols=125 Identities=21% Similarity=0.210 Sum_probs=87.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC-CeEEEEEeCCCCCCCCcCcHHHHHHHHhhh-
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-GFTLNIIDTPGLVEAGYVNYQALELIKGFL- 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~~l~viDTPG~~~~~~~~~~~~~~i~~~~- 113 (298)
.-..|.++|.||+|||||+|+|++..+ .+.+....|..++....... |+.+.+-||.||.+ ..+......++.-+
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~-~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~--~LP~~LV~AFksTLE 267 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADV-YVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIR--DLPHPLVEAFKSTLE 267 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCe-eccccccccccCceeEEEeCCCceEEEecCccCcc--cCChHHHHHHHHHHH
Confidence 457999999999999999999999876 33445556666666666655 78999999999974 34444544554433
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
....+|++|.|++.+............+.|.++.... .|+|+|+||.|..
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~--~p~i~v~NKiD~~ 317 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE--IPIILVLNKIDLL 317 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC--CCEEEEEeccccc
Confidence 2268999999955544323222233445555553333 8999999999986
No 162
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.42 E-value=2.9e-12 Score=110.72 Aligned_cols=117 Identities=15% Similarity=0.056 Sum_probs=70.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCc-ceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVV-TVNSFQSE-ALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~-~~~~~~~~-t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++|+++|.+|+|||||++++++.... ........ ...............+.+|||||.. . ...... .
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~----~~~~~~-----~ 69 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--M----WTEDSC-----M 69 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--h----HHHhHH-----h
Confidence 48999999999999999999866542 11111111 1111222222234678999999985 1 111111 1
Q ss_pred C-CCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 116 K-TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 116 ~-~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
. .+|++++|+++++..--..-.+++..+.+... ....|+++|.||+|+.+
T Consensus 70 ~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 70 QYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQ-LEDRPIILVGNKSDLAR 120 (221)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhccc
Confidence 3 89999999888753211112345555554321 12489999999999853
No 163
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.42 E-value=1.5e-12 Score=112.42 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=71.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++|+|+|.+|+|||||++++.+..... .+.++...........++ ..+.+|||+|..... .++. ...
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~--~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~--------~l~~-~~~ 70 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPG--SYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYD--------NVRP-LAY 70 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--ccCCccccceEEEEEECCEEEEEEEEeCCCcHHHH--------HHhH-Hhc
Confidence 689999999999999999999875421 222222111112233444 468899999974221 1211 122
Q ss_pred CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++|+|++++... +......+...+..... ..|+++|.||+|+.
T Consensus 71 ~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~---~~piiLVgnK~DL~ 118 (222)
T cd04173 71 PDSDAVLICFDISRPETLDSVLKKWQGETQEFCP---NAKVVLVGCKLDMR 118 (222)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEECcccc
Confidence 6999999998887632 32222234444444332 27999999999984
No 164
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.42 E-value=2.4e-12 Score=113.01 Aligned_cols=117 Identities=19% Similarity=0.190 Sum_probs=72.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
.+|+++|..|+|||||++++++..... .+.++...........++ ..+.+|||+|..+.. .++.. ..
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~--~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~--------~~~~~-~~ 69 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEE--QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFP--------AMRRL-SI 69 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCChhHhEEEEEEECCEEEEEEEEECCCChhhh--------HHHHH-Hh
Confidence 479999999999999999998765422 222222222222334444 578899999974321 11111 11
Q ss_pred CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhC-------CCCCceEEEEEeCcCCCC
Q 022358 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFG-------KQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~-------~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|+++++.. +. .-..+++.+.+... .....|+++|+||+|+..
T Consensus 70 ~~ad~iIlVfdv~~~~Sf~-~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 70 LTGDVFILVFSLDNRESFE-EVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred ccCCEEEEEEeCCCHHHHH-HHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 5789999998888632 22 12344555544311 123489999999999853
No 165
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.41 E-value=3.1e-12 Score=105.40 Aligned_cols=119 Identities=21% Similarity=0.209 Sum_probs=72.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..++|+++|.+|+|||||++++++...... ..+..+..........++ ..+.+|||||.... ......+.
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~~~~~~ 75 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQ-LFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERF-------RSLRTPFY 75 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcC-cCCceeeEEEEEEEEECCeEEEEEEEeCCChHHH-------HHhHHHHh
Confidence 458999999999999999999997754221 111111111122233344 46789999996321 11111222
Q ss_pred hcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCC--CCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|+++++.. +.. -..+...+...... ....|+++|.||+|+.
T Consensus 76 --~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 76 --RGSDCCLLTFAVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred --cCCCEEEEEEECCCHHHHHh-HHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 5889999998888632 222 22344444443321 1237999999999984
No 166
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.41 E-value=4.6e-12 Score=102.17 Aligned_cols=111 Identities=16% Similarity=0.198 Sum_probs=67.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCC
Q 022358 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 119 (298)
Q Consensus 40 IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d 119 (298)
|+++|++|+|||||+|+|.+.+... ...+ |..........++..+.+|||||... .......+. ..+|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~--~~~d 69 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE-DTIP--TVGFNMRKVTKGNVTLKVWDLGGQPR-------FRSMWERYC--RGVN 69 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc-CccC--CCCcceEEEEECCEEEEEEECCCCHh-------HHHHHHHHH--hcCC
Confidence 7899999999999999999986422 2122 22222233455678899999999732 112222222 5789
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHHhCC--CCCceEEEEEeCcCCC
Q 022358 120 VLLYADRLDAYRVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC 165 (298)
Q Consensus 120 ~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~ 165 (298)
++++|++++... . -......+...... ....|+++|+||+|+.
T Consensus 70 ~ii~v~d~~~~~--~-~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 114 (159)
T cd04159 70 AIVYVVDAADRT--A-LEAAKNELHDLLEKPSLEGIPLLVLGNKNDLP 114 (159)
T ss_pred EEEEEEECCCHH--H-HHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 999996665311 1 11111222222211 1237999999999985
No 167
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.41 E-value=5.3e-12 Score=123.49 Aligned_cols=112 Identities=21% Similarity=0.299 Sum_probs=78.5
Q ss_pred cCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEE
Q 022358 44 GKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLY 123 (298)
Q Consensus 44 G~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~ 123 (298)
|.+|+|||||+|+++|... .+++.++.|.........+++.++.+|||||..+......+ .+..+.++....+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~-e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLE-EEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchH-HHHHHHHHhhcCCCEEEE
Confidence 8999999999999999875 67788888887777777788889999999999864432211 111233334468999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 124 ADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 124 v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
| +|.+.... .......+.+. ..|+++|+||+|+.
T Consensus 79 V--vDat~ler-~l~l~~ql~~~-----~~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 79 V--VDASNLER-NLYLTLQLLEL-----GIPMILALNLVDEA 112 (591)
T ss_pred E--ecCCcchh-hHHHHHHHHhc-----CCCEEEEEehhHHH
Confidence 9 45434322 23333333332 28999999999985
No 168
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.40 E-value=3.6e-12 Score=104.88 Aligned_cols=111 Identities=17% Similarity=0.166 Sum_probs=68.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 118 (298)
.|+++|.+|+|||||++++.+.... ....+ |...........+.++.+|||||...... .....+ .++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~--~~~~p-t~g~~~~~i~~~~~~l~i~Dt~G~~~~~~---~~~~~~------~~a 68 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSL--ESVVP-TTGFNSVAIPTQDAIMELLEIGGSQNLRK---YWKRYL------SGS 68 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCc--ccccc-cCCcceEEEeeCCeEEEEEECCCCcchhH---HHHHHH------hhC
Confidence 3799999999999999999987532 11111 11112234456778999999999754321 111122 588
Q ss_pred CEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 119 DVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 119 d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
|+++||++.+... +. ....++..+... ....|+++|.||+|+.
T Consensus 69 d~ii~V~D~t~~~s~~-~~~~~l~~~~~~---~~~~piilv~NK~Dl~ 112 (164)
T cd04162 69 QGLIFVVDSADSERLP-LARQELHQLLQH---PPDLPLVVLANKQDLP 112 (164)
T ss_pred CEEEEEEECCCHHHHH-HHHHHHHHHHhC---CCCCcEEEEEeCcCCc
Confidence 9999997765421 11 112223333221 2348999999999984
No 169
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.40 E-value=2.9e-12 Score=106.70 Aligned_cols=116 Identities=21% Similarity=0.232 Sum_probs=70.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
.+|+++|.+|+|||||+|++++.... ....+++...........+ ..+.+|||||..+..... ..+.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~~~~-- 70 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV--ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILP-------QKYS-- 70 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--cccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHH-------HHHH--
Confidence 58999999999999999999987642 2222222222222333443 467899999975322111 1111
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
...|++++|++++....-+.-..+...+.+..+. ...|+++|.||+|+.
T Consensus 71 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 71 IGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLH 119 (180)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhh
Confidence 5789999997777522111122333444444322 237999999999985
No 170
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.39 E-value=1.8e-11 Score=101.28 Aligned_cols=116 Identities=16% Similarity=0.064 Sum_probs=71.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCccee-EEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALR-PVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~-~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
+-++|+++|.+|+|||||++++++.... +..+.++... ........+| ..+.++||+|..........+ +
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~---~--- 75 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAE---L--- 75 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhh---h---
Confidence 4589999999999999999999988753 1222222221 1122334445 568899999976543222211 1
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++.+.. .....+.+.+... ......|+++|+||+|+.
T Consensus 76 ---~~~d~~llv~d~~~~---~s~~~~~~~~~~~-~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 76 ---AACDVACLVYDSSDP---KSFSYCAEVYKKY-FMLGEIPCLFVAAKADLD 121 (169)
T ss_pred ---hcCCEEEEEEeCCCH---HHHHHHHHHHHHh-ccCCCCeEEEEEEccccc
Confidence 589999999776541 1111222223222 111248999999999984
No 171
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.39 E-value=5e-12 Score=112.29 Aligned_cols=112 Identities=14% Similarity=0.128 Sum_probs=75.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCc-----cccc------------CCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERV-----VTVN------------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV 101 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~-----~~~~------------~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~ 101 (298)
+|+++|.+|+|||||+|+|+.... ..+. ...+.|.........+.+.++.++||||..+..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~-- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT-- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHH--
Confidence 589999999999999999973211 0111 112334455556778899999999999985422
Q ss_pred cHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 102 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 102 ~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.+....+ ..+|++++|++... .....+..+++.+.... .|+++++||+|..
T Consensus 79 -~~~~~~l------~~aD~ailVVDa~~-g~~~~t~~~~~~~~~~~-----~p~ivviNK~D~~ 129 (270)
T cd01886 79 -IEVERSL------RVLDGAVAVFDAVA-GVEPQTETVWRQADRYN-----VPRIAFVNKMDRT 129 (270)
T ss_pred -HHHHHHH------HHcCEEEEEEECCC-CCCHHHHHHHHHHHHcC-----CCEEEEEECCCCC
Confidence 1222222 47899999965543 35555666666655442 7999999999984
No 172
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=3.2e-12 Score=104.73 Aligned_cols=127 Identities=15% Similarity=0.174 Sum_probs=83.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTV-NSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~-~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
..++|+|+|.+|+|||||+-+......... .+..+....+..........++.||||.|.......-..++
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYy-------- 75 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYY-------- 75 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCccccccccccee--------
Confidence 568999999999999999988876654331 11112122222222222346788999999975443333221
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCCCCChH
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYD 173 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~ 173 (298)
.++++.|+|++++...--..-+.+++.|++..+.+ .-+.+|.||+|+.......++
T Consensus 76 -RgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~--~vialvGNK~DL~~~R~V~~~ 131 (200)
T KOG0092|consen 76 -RGANAAIVVYDITDEESFEKAKNWVKELQRQASPN--IVIALVGNKADLLERREVEFE 131 (200)
T ss_pred -cCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCC--eEEEEecchhhhhhcccccHH
Confidence 69999999999986432233467888888887644 566789999999754554443
No 173
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.38 E-value=4e-12 Score=107.84 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=71.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~ 116 (298)
+|+++|.+|+|||||++++++..... ....++.........+.+ ..+.+|||||...... .... ...
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~~~~-----~~~ 69 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEP--KYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPA----MRKL-----SIQ 69 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--cCCCchhhheeEEEEECCEEEEEEEEECCCchhhhH----HHHH-----Hhh
Confidence 58999999999999999999876422 222222222222344455 5788999999753221 1111 115
Q ss_pred CCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 117 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 117 ~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
.+|++++|++++...--+.-..++..+.+.... ...|+++|+||+|+.+
T Consensus 70 ~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~ 118 (198)
T cd04147 70 NSDAFALVYAVDDPESFEEVERLREEILEVKED-KFVPIVVVGNKADSLE 118 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEcccccc
Confidence 889999997776421111122344444444321 2389999999999853
No 174
>PLN03108 Rab family protein; Provisional
Probab=99.38 E-value=9.1e-12 Score=106.73 Aligned_cols=117 Identities=14% Similarity=0.138 Sum_probs=71.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
.++|+++|.+|+|||||+|.+++........ +.............++ ..+.+|||||.... ......+.
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~-~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~-------~~~~~~~~- 76 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMITIDNKPIKLQIWDTAGQESF-------RSITRSYY- 76 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCC-CCccceEEEEEEEECCEEEEEEEEeCCCcHHH-------HHHHHHHh-
Confidence 4899999999999999999999876432221 1111111111233344 46789999996321 11111122
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++.......-..++..+...... ..|+++|.||+|+.
T Consensus 77 -~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~--~~piiiv~nK~Dl~ 124 (210)
T PLN03108 77 -RGAAGALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNKCDLA 124 (210)
T ss_pred -ccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCc
Confidence 5789999998776532111122445545444333 37999999999985
No 175
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.38 E-value=6.1e-12 Score=109.75 Aligned_cols=112 Identities=13% Similarity=0.136 Sum_probs=73.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcc--cccC---------------CCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVV--TVNS---------------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV 101 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~--~~~~---------------~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~ 101 (298)
+|+++|..|+|||||+++|+..... ..+. ..+.|.........+++.++.+|||||..+..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~-- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI-- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH--
Confidence 5899999999999999999864211 0010 01112233345567889999999999996532
Q ss_pred cHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 102 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 102 ~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
......+ ..+|++++|++... ........+.+.+.+. ..|+++++||+|+.
T Consensus 79 -~~~~~~l------~~aD~~IlVvd~~~-g~~~~~~~~~~~~~~~-----~~P~iivvNK~D~~ 129 (237)
T cd04168 79 -AEVERSL------SVLDGAILVISAVE-GVQAQTRILWRLLRKL-----NIPTIIFVNKIDRA 129 (237)
T ss_pred -HHHHHHH------HHhCeEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECcccc
Confidence 1222222 47899999966654 3454445555555443 27999999999984
No 176
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.38 E-value=9.6e-12 Score=106.71 Aligned_cols=118 Identities=14% Similarity=0.162 Sum_probs=71.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE-C--CeEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-G--GFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~--g~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
.++|+++|.+|+|||||+|.+++........ +..+.......... . ...+.+|||||..... .....+.
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~-~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~ 73 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSD-PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFR-------SITRSYY 73 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC-ceeceEEEEEEEEECCCCEEEEEEEeCCcchhHH-------HHHHHHh
Confidence 3799999999999999999999876533221 11111111112222 2 2478999999963211 1111222
Q ss_pred hcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++... +.. -.+++..+.+.... ...++++|.||+|+.+
T Consensus 74 --~~~d~iilv~D~~~~~Sf~~-l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 74 --RNSVGVLLVFDITNRESFEH-VHDWLEEARSHIQP-HRPVFILVGHKCDLES 123 (211)
T ss_pred --cCCcEEEEEEECCCHHHHHH-HHHHHHHHHHhcCC-CCCeEEEEEEcccccc
Confidence 5789999998887522 221 23445555444332 1267899999999853
No 177
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.37 E-value=1.3e-11 Score=105.21 Aligned_cols=115 Identities=12% Similarity=0.154 Sum_probs=66.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEE--ECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS--KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~--~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~ 116 (298)
+|+++|++|+|||||++.|++.....+ .++.+.....+... ..+..+.+|||||.... ...+..++ .
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t--~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~-------~~~~~~~~--~ 70 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRST--VTSIEPNVATFILNSEGKGKKFRLVDVPGHPKL-------RDKLLETL--K 70 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc--cCcEeecceEEEeecCCCCceEEEEECCCCHHH-------HHHHHHHH--h
Confidence 689999999999999999998754222 22221111111111 23678999999997532 11222222 3
Q ss_pred CC-CEEEEEEeCCCCCCCHHHHHHHHHHHHHh----CCCCCceEEEEEeCcCCCC
Q 022358 117 TI-DVLLYADRLDAYRVDDLDRQIIKAVTGTF----GKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 117 ~~-d~vl~v~~~d~~~~~~~~~~~l~~l~~~~----~~~~~~~~ivV~tk~D~~~ 166 (298)
.. ++++||++... ....-....+.+...+ ......|+++|.||+|+..
T Consensus 71 ~~~~~vV~VvD~~~--~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 71 NSAKGIVFVVDSAT--FQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ccCCEEEEEEECcc--chhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 44 99999966554 2111122222222211 1112389999999999863
No 178
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.37 E-value=1.8e-11 Score=106.43 Aligned_cols=123 Identities=23% Similarity=0.334 Sum_probs=73.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEE--------------------------------------
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVM-------------------------------------- 77 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~-------------------------------------- 77 (298)
...+|+|+|++|+||||++++|+|......+. ..+|..+..
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~-g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCC-CcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999999975322211 011111110
Q ss_pred -----------EEEEE---CCeEEEEEeCCCCCCCC--cC----cHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHH-
Q 022358 78 -----------VSRSK---GGFTLNIIDTPGLVEAG--YV----NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLD- 136 (298)
Q Consensus 78 -----------~~~~~---~g~~l~viDTPG~~~~~--~~----~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~- 136 (298)
...+. +...++++||||+.... .. ...+.+.+..++. ...+++|+|++... .+...+
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~-~~~~IIL~Vvda~~-d~~~~d~ 181 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFIS-KEECLILAVTPANV-DLANSDA 181 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHh-CccCeEEEEEECCC-CCCchhH
Confidence 00111 11358999999997431 11 1223333444443 34568899955433 345444
Q ss_pred HHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 137 RQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 137 ~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
.++.+.+... ++++++|+||+|..+
T Consensus 182 l~ia~~ld~~-----~~rti~ViTK~D~~~ 206 (240)
T smart00053 182 LKLAKEVDPQ-----GERTIGVITKLDLMD 206 (240)
T ss_pred HHHHHHHHHc-----CCcEEEEEECCCCCC
Confidence 4666666554 289999999999863
No 179
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.37 E-value=6.1e-12 Score=103.02 Aligned_cols=102 Identities=18% Similarity=0.256 Sum_probs=62.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 118 (298)
+|+++|.+|+|||||+|+|.|.... . ..+. ...+.+. .+|||||++... .+....+... ..++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~~-----~v~~~~~--~~iDtpG~~~~~---~~~~~~~~~~--~~~a 65 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKTQ-----AVEFNDK--GDIDTPGEYFSH---PRWYHALITT--LQDV 65 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C---ccce-----EEEECCC--CcccCCccccCC---HHHHHHHHHH--HhcC
Confidence 7999999999999999999987521 1 1111 1122222 269999986432 2233332222 2689
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 119 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 119 d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
|++++|++.+... +.... .+.+. +. .+|+++++||+|+.
T Consensus 66 d~il~v~d~~~~~-s~~~~----~~~~~-~~--~~~ii~v~nK~Dl~ 104 (158)
T PRK15467 66 DMLIYVHGANDPE-SRLPA----GLLDI-GV--SKRQIAVISKTDMP 104 (158)
T ss_pred CEEEEEEeCCCcc-cccCH----HHHhc-cC--CCCeEEEEEccccC
Confidence 9999997776422 11111 22222 11 26899999999984
No 180
>PLN03126 Elongation factor Tu; Provisional
Probab=99.36 E-value=6.2e-11 Score=113.05 Aligned_cols=138 Identities=9% Similarity=0.016 Sum_probs=84.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccc---------------cCCCCcceeEEEEEEEECCeEEEEEeCCCCCCC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTV---------------NSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 98 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~---------------~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~ 98 (298)
....++|+++|..++|||||+++|++...... ....+.|.......++.++..+.++||||..+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~- 156 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD- 156 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH-
Confidence 45679999999999999999999996321110 11122333333444566788999999999742
Q ss_pred CcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCCCCChHHHhhh
Q 022358 99 GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSK 178 (298)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~ 178 (298)
+...+...+ ..+|++++|++.+. .......+.+..+... |. .++|+++||+|+.+. ++..+.
T Consensus 157 ------f~~~~~~g~--~~aD~ailVVda~~-G~~~qt~e~~~~~~~~-gi---~~iIvvvNK~Dl~~~-----~~~~~~ 218 (478)
T PLN03126 157 ------YVKNMITGA--AQMDGAILVVSGAD-GPMPQTKEHILLAKQV-GV---PNMVVFLNKQDQVDD-----EELLEL 218 (478)
T ss_pred ------HHHHHHHHH--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CeEEEEEecccccCH-----HHHHHH
Confidence 333332222 58899999966553 3445555555544433 31 348899999998531 122222
Q ss_pred ccHHHHHHHHhh
Q 022358 179 RSDALLKTIRLG 190 (298)
Q Consensus 179 ~~~~l~~~i~~~ 190 (298)
..+.+++++.+.
T Consensus 219 i~~~i~~~l~~~ 230 (478)
T PLN03126 219 VELEVRELLSSY 230 (478)
T ss_pred HHHHHHHHHHhc
Confidence 224566666554
No 181
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=6e-12 Score=103.47 Aligned_cols=120 Identities=14% Similarity=0.155 Sum_probs=81.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcce--eEEEEEEEECCe--EEEEEeCCCCCCCCcCcHHHHHHHHh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEAL--RPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKG 111 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~--~~~~~~~~~~g~--~l~viDTPG~~~~~~~~~~~~~~i~~ 111 (298)
--++|+|+|.+|+|||.|.-++.+....... ..|. +-...+.+.+|. ++.||||.|..........+
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~---~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~sy------ 78 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESY---ISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSY------ 78 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhh---cceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhh------
Confidence 3589999999999999999999887653211 1121 122233444444 68999999984433222111
Q ss_pred hhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCCC
Q 022358 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 169 (298)
Q Consensus 112 ~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~ 169 (298)
..++|.|++|++++...--..-..++..+.+....+ .|.++|.||+|+.+...
T Consensus 79 ---YR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~--v~~lLVGNK~Dl~~~~~ 131 (205)
T KOG0084|consen 79 ---YRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASEN--VPKLLVGNKCDLTEKRV 131 (205)
T ss_pred ---ccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCC--CCeEEEeeccccHhhee
Confidence 169999999999987442223456788888887765 79999999999854333
No 182
>PLN03127 Elongation factor Tu; Provisional
Probab=99.36 E-value=6e-11 Score=112.48 Aligned_cols=117 Identities=9% Similarity=0.040 Sum_probs=79.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC------Ccccc---------cCCCCcceeEEEEEEEECCeEEEEEeCCCCCCC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGE------RVVTV---------NSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 98 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~------~~~~~---------~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~ 98 (298)
....++|+++|..++|||||+++|++. ..... ....+.|.......++.++.+++++||||..+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~- 136 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD- 136 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc-
Confidence 456799999999999999999999843 10000 01134455555556666788999999999842
Q ss_pred CcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCce-EEEEEeCcCCC
Q 022358 99 GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC 165 (298)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~ 165 (298)
+...+.... ..+|++++|++.+. .....+.+.+..+.... .| +|+++||+|+.
T Consensus 137 ------f~~~~~~g~--~~aD~allVVda~~-g~~~qt~e~l~~~~~~g-----ip~iIvviNKiDlv 190 (447)
T PLN03127 137 ------YVKNMITGA--AQMDGGILVVSAPD-GPMPQTKEHILLARQVG-----VPSLVVFLNKVDVV 190 (447)
T ss_pred ------hHHHHHHHH--hhCCEEEEEEECCC-CCchhHHHHHHHHHHcC-----CCeEEEEEEeeccC
Confidence 222222222 46999999966543 35566667776665542 56 67899999985
No 183
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.36 E-value=9e-12 Score=104.69 Aligned_cols=114 Identities=17% Similarity=0.213 Sum_probs=72.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
.+|+++|.+|+|||||+|.+....... ....+............+ ..+.++||||.......... ..
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~---------~~ 70 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE--EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPL---------SY 70 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchh---------hc
Confidence 589999999999999999998554322 111111111122233344 35789999997543221111 11
Q ss_pred CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++... +......++..+....+. .|+++|.||+|+.
T Consensus 71 ~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~---~piilvgnK~Dl~ 118 (187)
T cd04129 71 SKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPN---VPVILVGLKKDLR 118 (187)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEeeChhhh
Confidence 5789999998887633 322223466666655433 8999999999984
No 184
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.35 E-value=3e-12 Score=112.45 Aligned_cols=121 Identities=21% Similarity=0.290 Sum_probs=89.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeE-EEEEeCCCCCCCCcCcH----HHHHHHHhh
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFT-LNIIDTPGLVEAGYVNY----QALELIKGF 112 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~-l~viDTPG~~~~~~~~~----~~~~~i~~~ 112 (298)
..|.+||-+|+|||||+|+|...+. .++.++.+|..+......++++. ++|-|.||+.+....+. +.++.+
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHi--- 272 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHI--- 272 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHH---
Confidence 3678999999999999999999887 78899999999998888777664 99999999998776664 455555
Q ss_pred hhcCCCCEEEEEEeCCCCC-CCH-HHHHHH-HHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYR-VDD-LDRQII-KAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~-~~~-~~~~~l-~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.+++.++||+++.... .++ .+.+.+ .++..+-..-..+|.++|.||+|+.
T Consensus 273 ---ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 273 ---ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred ---HhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 4789999997776542 122 222332 3333222222347899999999984
No 185
>PRK12736 elongation factor Tu; Reviewed
Probab=99.35 E-value=5.3e-11 Score=111.46 Aligned_cols=117 Identities=12% Similarity=0.091 Sum_probs=77.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccc----------c-----cCCCCcceeEEEEEEEECCeEEEEEeCCCCCCC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVT----------V-----NSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 98 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~----------~-----~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~ 98 (298)
....++|+++|..++|||||+++|++..... . ....+.|.......++.++..+.++||||..
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~-- 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA-- 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH--
Confidence 3467999999999999999999999742100 0 0123344444444555567789999999963
Q ss_pred CcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCce-EEEEEeCcCCC
Q 022358 99 GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC 165 (298)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~ 165 (298)
++...+.... ..+|++++|++.+. .....+.+.+..+... + .| +|+++||+|+.
T Consensus 87 -----~f~~~~~~~~--~~~d~~llVvd~~~-g~~~~t~~~~~~~~~~-g----~~~~IvviNK~D~~ 141 (394)
T PRK12736 87 -----DYVKNMITGA--AQMDGAILVVAATD-GPMPQTREHILLARQV-G----VPYLVVFLNKVDLV 141 (394)
T ss_pred -----HHHHHHHHHH--hhCCEEEEEEECCC-CCchhHHHHHHHHHHc-C----CCEEEEEEEecCCc
Confidence 2333332222 57899999966653 3555566666665544 2 45 78999999985
No 186
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.35 E-value=2e-11 Score=103.90 Aligned_cols=116 Identities=17% Similarity=0.201 Sum_probs=71.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEE--EEEEE-------CCeEEEEEeCCCCCCCCcCcHHHHHH
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVM--VSRSK-------GGFTLNIIDTPGLVEAGYVNYQALEL 108 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~--~~~~~-------~g~~l~viDTPG~~~~~~~~~~~~~~ 108 (298)
++|+++|.+|+|||||++.+++..... .. ..|..+.. ....+ ....+.+|||+|.... ..
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~--~~-~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~--------~~ 69 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLG--RP-SWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV--------KS 69 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC--CC-CcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH--------HH
Confidence 489999999999999999999876422 11 11222111 11222 2246899999998432 11
Q ss_pred HHhhhhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhC-----------------CCCCceEEEEEeCcCCCC
Q 022358 109 IKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFG-----------------KQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 109 i~~~~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~-----------------~~~~~~~ivV~tk~D~~~ 166 (298)
++.. ...++|++++|+++++.. +... ..++..+....+ .....|+++|.||+|+.+
T Consensus 70 l~~~-~yr~ad~iIlVyDvtn~~Sf~~l-~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 70 TRAV-FYNQVNGIILVHDLTNRKSSQNL-QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred HHHH-HhCcCCEEEEEEECcChHHHHHH-HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 2111 116899999999988633 2222 356666654311 112379999999999853
No 187
>PRK12735 elongation factor Tu; Reviewed
Probab=99.35 E-value=5.8e-11 Score=111.28 Aligned_cols=117 Identities=10% Similarity=0.088 Sum_probs=75.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCc------cc---------ccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERV------VT---------VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 98 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~------~~---------~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~ 98 (298)
....++|+++|..++|||||+|+|++... .. .....+.|........+.++.++.++||||..
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~-- 86 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA-- 86 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH--
Confidence 45679999999999999999999996210 00 00122334444444455677789999999973
Q ss_pred CcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCce-EEEEEeCcCCC
Q 022358 99 GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC 165 (298)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~ 165 (298)
++...+...+ ..+|++++|++.+. .......+.+..+... + .| +++|+||+|+.
T Consensus 87 -----~f~~~~~~~~--~~aD~~llVvda~~-g~~~qt~e~l~~~~~~-g----i~~iivvvNK~Dl~ 141 (396)
T PRK12735 87 -----DYVKNMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQV-G----VPYIVVFLNKCDMV 141 (396)
T ss_pred -----HHHHHHHhhh--ccCCEEEEEEECCC-CCchhHHHHHHHHHHc-C----CCeEEEEEEecCCc
Confidence 3333333222 58899999976654 3445555555554433 2 55 45689999985
No 188
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.35 E-value=1.1e-11 Score=123.95 Aligned_cols=116 Identities=13% Similarity=0.092 Sum_probs=81.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..++.+|+++|.+++|||||+++|.+..+. .+...+.|.....+...+++..+++|||||..+... ... +.
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~---m~~----rg- 357 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTA---MRA----RG- 357 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCCccchh---HHH----hh-
Confidence 347789999999999999999999987653 233344455555566777889999999999865421 111 11
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
...+|++++|++.+. .......+.+...... ..|+|+++||+|+.
T Consensus 358 -a~~aDiaILVVdAdd-Gv~~qT~e~i~~a~~~-----~vPiIVviNKiDl~ 402 (787)
T PRK05306 358 -AQVTDIVVLVVAADD-GVMPQTIEAINHAKAA-----GVPIIVAINKIDKP 402 (787)
T ss_pred -hhhCCEEEEEEECCC-CCCHhHHHHHHHHHhc-----CCcEEEEEECcccc
Confidence 157899999987765 3334444444433322 27999999999984
No 189
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.33 E-value=1.9e-11 Score=102.37 Aligned_cols=113 Identities=18% Similarity=0.152 Sum_probs=69.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcc-eeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
++|+++|..|+|||||++++++..... .+.++. ..........++ ..+.+|||+|...... .... .
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~--~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~-------~~~~--~ 69 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDE--DYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFIN-------MLPL--V 69 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHH-------hhHH--H
Confidence 589999999999999999998875422 121111 111112334444 4689999999743211 1111 1
Q ss_pred cCCCCEEEEEEeCCCCCCCHHH-HHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLD-RQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
...+|++++|++++... +..+ .+++..+.+..... .| ++|.||+|+.
T Consensus 70 ~~~a~~iilv~D~t~~~-s~~~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~ 117 (182)
T cd04128 70 CNDAVAILFMFDLTRKS-TLNSIKEWYRQARGFNKTA--IP-ILVGTKYDLF 117 (182)
T ss_pred CcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhCCCC--CE-EEEEEchhcc
Confidence 26899999998877522 2111 24555555543322 45 6889999985
No 190
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.33 E-value=5.6e-11 Score=101.31 Aligned_cols=115 Identities=16% Similarity=0.157 Sum_probs=66.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccc-ccC-CCCcceeEEEEEEEE---------------------------CC----
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVT-VNS-FQSEALRPVMVSRSK---------------------------GG---- 84 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~-~~~-~~~~t~~~~~~~~~~---------------------------~g---- 84 (298)
++|+++|+.|+|||||+.+|.+..... ... ..+.+..+......+ .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999998762100 000 001111111000011 02
Q ss_pred --eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCc
Q 022358 85 --FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (298)
Q Consensus 85 --~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~ 162 (298)
..+.+|||||.. .+...+...+ ..+|++++|++.+...........+..+... +. .|+++|+||+
T Consensus 81 ~~~~i~~iDtPG~~-------~~~~~~~~~~--~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~~---~~iiivvNK~ 147 (203)
T cd01888 81 LVRHVSFVDCPGHE-------ILMATMLSGA--AVMDGALLLIAANEPCPQPQTSEHLAALEIM-GL---KHIIIVQNKI 147 (203)
T ss_pred cccEEEEEECCChH-------HHHHHHHHhh--hcCCEEEEEEECCCCCCCcchHHHHHHHHHc-CC---CcEEEEEEch
Confidence 689999999952 2333332222 5789999997766422223333444444322 21 5799999999
Q ss_pred CCC
Q 022358 163 QLC 165 (298)
Q Consensus 163 D~~ 165 (298)
|+.
T Consensus 148 Dl~ 150 (203)
T cd01888 148 DLV 150 (203)
T ss_pred hcc
Confidence 985
No 191
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.33 E-value=1.3e-11 Score=116.84 Aligned_cols=118 Identities=15% Similarity=0.154 Sum_probs=77.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccc------------------------------CCCCcceeEEEEEEEECC
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVN------------------------------SFQSEALRPVMVSRSKGG 84 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~------------------------------~~~~~t~~~~~~~~~~~g 84 (298)
...++|+++|.+++|||||+|+|+........ ...+.|........+.++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 35699999999999999999999854321110 124556666666777888
Q ss_pred eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCC-CCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcC
Q 022358 85 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAY-RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (298)
Q Consensus 85 ~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 163 (298)
..+.+|||||..+.. ..+... ...+|++++|++.+.. .+.....+.+..+. ..+. .++++|+||+|
T Consensus 84 ~~i~liDtpG~~~~~---~~~~~~------~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~~~---~~iivviNK~D 150 (425)
T PRK12317 84 YYFTIVDCPGHRDFV---KNMITG------ASQADAAVLVVAADDAGGVMPQTREHVFLAR-TLGI---NQLIVAINKMD 150 (425)
T ss_pred eEEEEEECCCcccch---hhHhhc------hhcCCEEEEEEEcccCCCCCcchHHHHHHHH-HcCC---CeEEEEEEccc
Confidence 999999999974321 111111 1579999999777641 23333344444333 3332 47999999999
Q ss_pred CC
Q 022358 164 LC 165 (298)
Q Consensus 164 ~~ 165 (298)
+.
T Consensus 151 l~ 152 (425)
T PRK12317 151 AV 152 (425)
T ss_pred cc
Confidence 85
No 192
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.32 E-value=1.1e-10 Score=114.29 Aligned_cols=114 Identities=17% Similarity=0.173 Sum_probs=75.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccc--cCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTV--NSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~--~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++|+++|.+++|||||+|+|+|...... ....+.|...........+..+.+|||||.. .+...+....
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe-------~f~~~~~~g~-- 71 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE-------KFISNAIAGG-- 71 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH-------HHHHHHHhhh--
Confidence 4799999999999999999998642111 1123344444444566777899999999962 2333332222
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.++|++++|++.+. .......+.+..+.. .+- .++++|+||+|+.
T Consensus 72 ~~aD~aILVVDa~~-G~~~qT~ehl~il~~-lgi---~~iIVVlNK~Dlv 116 (581)
T TIGR00475 72 GGIDAALLVVDADE-GVMTQTGEHLAVLDL-LGI---PHTIVVITKADRV 116 (581)
T ss_pred ccCCEEEEEEECCC-CCcHHHHHHHHHHHH-cCC---CeEEEEEECCCCC
Confidence 58999999977764 233444455544433 331 3499999999985
No 193
>PRK00049 elongation factor Tu; Reviewed
Probab=99.32 E-value=8.1e-11 Score=110.26 Aligned_cols=117 Identities=9% Similarity=0.053 Sum_probs=78.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcc------cc---------cCCCCcceeEEEEEEEECCeEEEEEeCCCCCCC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVV------TV---------NSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 98 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~------~~---------~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~ 98 (298)
....++|+++|..++|||||+++|++.... .. ....+.|........+.++.++.++||||..
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~-- 86 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA-- 86 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH--
Confidence 346799999999999999999999973110 00 0122334444444455577899999999973
Q ss_pred CcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEE-EEEeCcCCC
Q 022358 99 GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSL-LVLTHAQLC 165 (298)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~i-vV~tk~D~~ 165 (298)
++...+...+ ..+|++++|++.+. .....+.+.+..+.... .|.+ +++||+|+.
T Consensus 87 -----~f~~~~~~~~--~~aD~~llVVDa~~-g~~~qt~~~~~~~~~~g-----~p~iiVvvNK~D~~ 141 (396)
T PRK00049 87 -----DYVKNMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQVG-----VPYIVVFLNKCDMV 141 (396)
T ss_pred -----HHHHHHHhhh--ccCCEEEEEEECCC-CCchHHHHHHHHHHHcC-----CCEEEEEEeecCCc
Confidence 3333333222 68999999966553 35666667776655442 5654 689999985
No 194
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.32 E-value=8.9e-12 Score=99.65 Aligned_cols=100 Identities=18% Similarity=0.285 Sum_probs=62.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 118 (298)
+|+++|.+|+|||||+|++.+.... .. .|. ..++.+ .+|||||... ........+... ...+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~-~t~-----~~~~~~---~~iDt~G~~~---~~~~~~~~~~~~--~~~a 63 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YK-KTQ-----AVEYND---GAIDTPGEYV---ENRRLYSALIVT--AADA 63 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----cc-cce-----eEEEcC---eeecCchhhh---hhHHHHHHHHHH--hhcC
Confidence 7999999999999999999988641 11 111 122322 6899999732 112222222222 2689
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 119 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 119 d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
|++++|++++... +..+..+. +..+ .|+++|+||+|+.
T Consensus 64 d~vilv~d~~~~~-s~~~~~~~----~~~~----~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 64 DVIALVQSATDPE-SRFPPGFA----SIFV----KPVIGLVTKIDLA 101 (142)
T ss_pred CEEEEEecCCCCC-cCCChhHH----Hhcc----CCeEEEEEeeccC
Confidence 9999997776522 22222222 2222 5999999999985
No 195
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.32 E-value=8.7e-12 Score=99.09 Aligned_cols=118 Identities=16% Similarity=0.126 Sum_probs=77.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCC-CCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSF-QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~-~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
.++|+++|.+|+|||||+-++.....-...+. .+............+..++.+|||.|...+......++
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyy--------- 81 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYY--------- 81 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHh---------
Confidence 48999999999999999999887654222211 12222223333333445789999999977665555443
Q ss_pred CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.++..+++|++++... +... ..+++++..+.- +...-.++|.||.|..
T Consensus 82 RgaqGiIlVYDVT~Rdtf~kL-d~W~~Eld~Yst-n~diikmlVgNKiDke 130 (209)
T KOG0080|consen 82 RGAQGIILVYDVTSRDTFVKL-DIWLKELDLYST-NPDIIKMLVGNKIDKE 130 (209)
T ss_pred ccCceeEEEEEccchhhHHhH-HHHHHHHHhhcC-CccHhHhhhcccccch
Confidence 5889999999998733 4333 345666655543 3234567999999974
No 196
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.32 E-value=3.8e-11 Score=106.73 Aligned_cols=112 Identities=15% Similarity=0.242 Sum_probs=71.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccc--ccCC---------------CCcceeEEEEEEEECCeEEEEEeCCCCCCCCcC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVT--VNSF---------------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV 101 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~--~~~~---------------~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~ 101 (298)
+|+++|.+|+|||||+|+|++..... .+.. .+.+.........+++..+.+|||||..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f--- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF--- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH---
Confidence 58999999999999999998543211 1110 011222334456778899999999998532
Q ss_pred cHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 102 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 102 ~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
......++ ..+|++++|++.+. ........+++.+... ..|.++|+||+|..
T Consensus 78 ----~~~~~~~l--~~aD~~i~Vvd~~~-g~~~~~~~~~~~~~~~-----~~p~iivvNK~D~~ 129 (268)
T cd04170 78 ----VGETRAAL--RAADAALVVVSAQS-GVEVGTEKLWEFADEA-----GIPRIIFINKMDRE 129 (268)
T ss_pred ----HHHHHHHH--HHCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECCccC
Confidence 11222222 47899999976654 2333344455544432 27899999999984
No 197
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.32 E-value=2.2e-11 Score=108.13 Aligned_cols=113 Identities=10% Similarity=0.138 Sum_probs=72.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcc--ccc-------------CC------CCcceeEEEEEEEECCeEEEEEeCCCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVV--TVN-------------SF------QSEALRPVMVSRSKGGFTLNIIDTPGLV 96 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~--~~~-------------~~------~~~t~~~~~~~~~~~g~~l~viDTPG~~ 96 (298)
-+|+++|+.|+|||||+|+|+..... ..+ .+ .+.+........++.+.++.+|||||..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 47999999999999999999853211 111 10 0112233445678889999999999985
Q ss_pred CCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 97 EAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 97 ~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+.. .+....+ ..+|++++|++... ........+++..... ..|+++++||+|..
T Consensus 83 df~---~~~~~~l------~~aD~~IlVvda~~-g~~~~~~~i~~~~~~~-----~~P~iivvNK~D~~ 136 (267)
T cd04169 83 DFS---EDTYRTL------TAVDSAVMVIDAAK-GVEPQTRKLFEVCRLR-----GIPIITFINKLDRE 136 (267)
T ss_pred HHH---HHHHHHH------HHCCEEEEEEECCC-CccHHHHHHHHHHHhc-----CCCEEEEEECCccC
Confidence 422 1222222 47899999976653 3443334444433322 27899999999974
No 198
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.32 E-value=2.1e-11 Score=118.82 Aligned_cols=115 Identities=14% Similarity=0.106 Sum_probs=76.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC-eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
.++.+|+++|.+++|||||+|+|.+..+.. ...++.|.....+...+.+ ..+.+|||||..+... ...+
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~-~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~-------~r~r-- 154 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQ-GEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTS-------MRAR-- 154 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccc-ccCCceeecceEEEEEECCCcEEEEEECCCCcchhh-------HHHh--
Confidence 467899999999999999999999876533 2333444444445555544 4899999999854321 1111
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
....+|++++|++.+. ...+...+.+...... ..|+++++||+|+.
T Consensus 155 ga~~aDiaILVVda~d-gv~~qT~e~i~~~~~~-----~vPiIVviNKiDl~ 200 (587)
T TIGR00487 155 GAKVTDIVVLVVAADD-GVMPQTIEAISHAKAA-----NVPIIVAINKIDKP 200 (587)
T ss_pred hhccCCEEEEEEECCC-CCCHhHHHHHHHHHHc-----CCCEEEEEECcccc
Confidence 1257899999977764 2333334444333222 27999999999984
No 199
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.31 E-value=1.3e-11 Score=97.88 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=65.7
Q ss_pred EEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE--CCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCC
Q 022358 42 VMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 119 (298)
Q Consensus 42 lvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d 119 (298)
++|.+|+|||||+|++++..... .....+........... .+..+.+|||||..+..... ..+ ...+|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~~~--~~~~~ 70 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-EEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLR-------RLY--YRGAD 70 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-cccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHH-------HHH--hcCCC
Confidence 57999999999999999886521 11111111222222222 35689999999985432211 111 16899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCC
Q 022358 120 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (298)
Q Consensus 120 ~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 167 (298)
++++|++.+... +..+.................|+++|+||+|+.+.
T Consensus 71 ~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 71 GIILVYDVTDRE-SFENVKEWLLLILINKEGENIPIILVGNKIDLPEE 117 (157)
T ss_pred EEEEEEECcCHH-HHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence 999997666421 11112111001111112334899999999998643
No 200
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.31 E-value=1.6e-11 Score=100.16 Aligned_cols=115 Identities=19% Similarity=0.271 Sum_probs=75.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe--EEEEEeCCCCCCCCcCcHHHHHHHHhhhhcC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~ 116 (298)
||+++|..|+|||||++++.+..... ...+.............++. .+.+|||+|.... ......+ ..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----~~~~~~~-----~~ 70 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPE-NYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF----DSLRDIF-----YR 70 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTS-SSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGG----HHHHHHH-----HT
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccc-ccccccccccccccccccccccccccccccccccc----ccccccc-----cc
Confidence 69999999999999999999876422 11111112333344444444 5899999996321 1111111 16
Q ss_pred CCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 117 TIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 117 ~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
.+|++++|++++... +... ..++..+....+.. .|+++|.||.|+.+
T Consensus 71 ~~~~~ii~fd~~~~~S~~~~-~~~~~~i~~~~~~~--~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 71 NSDAIIIVFDVTDEESFENL-KKWLEEIQKYKPED--IPIIVVGNKSDLSD 118 (162)
T ss_dssp TESEEEEEEETTBHHHHHTH-HHHHHHHHHHSTTT--SEEEEEEETTTGGG
T ss_pred cccccccccccccccccccc-cccccccccccccc--ccceeeeccccccc
Confidence 899999999887633 3222 36777777776632 79999999999853
No 201
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.29 E-value=3.3e-11 Score=107.19 Aligned_cols=120 Identities=23% Similarity=0.292 Sum_probs=88.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE-CCeEEEEEeCCCCCCCCc----CcHHHHHHHHhhh
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGY----VNYQALELIKGFL 113 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~l~viDTPG~~~~~~----~~~~~~~~i~~~~ 113 (298)
-|.++|-+++|||||+|++...+. .+.+++.+|..+....... .+..+++-|.||+.+... .-.+.++.|.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP-KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE--- 236 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP-KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIE--- 236 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC-cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHH---
Confidence 467899999999999999999886 7889999999887766654 566799999999998553 3356777774
Q ss_pred hcCCCCEEEEEEeCCCCC-CCH-HHHH-HHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYR-VDD-LDRQ-IIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~-~~~-~~~~-~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
++-++++|++++... .++ .+.+ +..+|..+-..-..+|.++|+||+|..
T Consensus 237 ---Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~ 288 (369)
T COG0536 237 ---RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP 288 (369)
T ss_pred ---hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC
Confidence 678899997776533 222 2333 334555443333448999999999963
No 202
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.28 E-value=1.9e-10 Score=107.73 Aligned_cols=117 Identities=11% Similarity=0.098 Sum_probs=76.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCC------Ccccc---------cCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCC
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGE------RVVTV---------NSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG 99 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~------~~~~~---------~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~ 99 (298)
...++|+++|..++|||||+++|++. ..... ....+.|........+.++.++.+|||||..+
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~-- 87 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD-- 87 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH--
Confidence 46799999999999999999999853 10000 01134455555555556778899999999842
Q ss_pred cCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 100 YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+...+.... ..+|++++|++.+. .......+.+..+... +. .++|+|+||+|+.
T Consensus 88 -----f~~~~~~~~--~~~D~~ilVvda~~-g~~~qt~e~l~~~~~~-gi---~~iIvvvNK~Dl~ 141 (394)
T TIGR00485 88 -----YVKNMITGA--AQMDGAILVVSATD-GPMPQTREHILLARQV-GV---PYIVVFLNKCDMV 141 (394)
T ss_pred -----HHHHHHHHH--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CEEEEEEEecccC
Confidence 222222222 57899999966653 3455556666665544 21 3456789999985
No 203
>PLN00023 GTP-binding protein; Provisional
Probab=99.28 E-value=7e-11 Score=106.23 Aligned_cols=120 Identities=18% Similarity=0.225 Sum_probs=74.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEE--EEEEEE---------------CCeEEEEEeCCCCCC
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV--MVSRSK---------------GGFTLNIIDTPGLVE 97 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~--~~~~~~---------------~g~~l~viDTPG~~~ 97 (298)
...++|+++|..|||||||++.+++..... .. ..|.... .....+ ....+.||||+|...
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~--~~-~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIA--RP-PQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCccc--cc-CCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 356899999999999999999999875421 11 1122111 111222 124689999999743
Q ss_pred CCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCC----------CCCceEEEEEeCcCCCC
Q 022358 98 AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGK----------QIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~----------~~~~~~ivV~tk~D~~~ 166 (298)
... . ...+ ..++|++++|++++....-..-..+++.+...... ....++++|.||+|+.+
T Consensus 96 frs----L---~~~y--yr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 96 YKD----C---RSLF--YSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred hhh----h---hHHh--ccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 221 1 1111 26899999998887633112223566666665320 11378999999999853
No 204
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=5e-11 Score=97.89 Aligned_cols=126 Identities=13% Similarity=0.125 Sum_probs=80.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVN-SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~-~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
+..+|+++|..++||||||+..+-...-... +..+..........+-...++.+|||.|...+...-.. +.
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslips-------Y~- 92 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS-------YI- 92 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhh-------hc-
Confidence 3478999999999999999999866542211 11111111112222222347899999998544332222 22
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCCCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLN 171 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~ 171 (298)
..+.++++|+++....--+...++++.+....|.+ ...+++|.||.|+.+.....
T Consensus 93 -Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~-~viI~LVGnKtDL~dkrqvs 147 (221)
T KOG0094|consen 93 -RDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSD-DVIIFLVGNKTDLSDKRQVS 147 (221)
T ss_pred -cCCeEEEEEEeccccchHHHHHHHHHHHHhccCCC-ceEEEEEcccccccchhhhh
Confidence 58899999999987443334466777777666652 16788999999997554433
No 205
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.28 E-value=3.8e-11 Score=110.01 Aligned_cols=129 Identities=13% Similarity=0.231 Sum_probs=88.9
Q ss_pred HHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCC----Ccc-----------cccCCCC---cceeEEE---EEEEE--
Q 022358 26 LLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE----RVV-----------TVNSFQS---EALRPVM---VSRSK-- 82 (298)
Q Consensus 26 ~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~----~~~-----------~~~~~~~---~t~~~~~---~~~~~-- 82 (298)
+.+.+.++....+.|.|+|+.++|||||||++++. +.. -+++.++ +|+.+.. -..+.
T Consensus 6 iykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~ 85 (492)
T TIGR02836 6 IYKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEINI 85 (492)
T ss_pred HHHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEec
Confidence 34445555668899999999999999999999998 554 3455566 5555554 11221
Q ss_pred ---CCeEEEEEeCCCCCCCCcCcH----H----------------------HHHHHHhhhhcCCCCEEEEEEeCCC----
Q 022358 83 ---GGFTLNIIDTPGLVEAGYVNY----Q----------------------ALELIKGFLLNKTIDVLLYADRLDA---- 129 (298)
Q Consensus 83 ---~g~~l~viDTPG~~~~~~~~~----~----------------------~~~~i~~~~~~~~~d~vl~v~~~d~---- 129 (298)
...+++++||+|+.+.+.... . ..+.+ ..+.++.|+|.- |+
T Consensus 86 ~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI-----~dhstIgivVtT-Dgsi~d 159 (492)
T TIGR02836 86 NEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVI-----QEHSTIGVVVTT-DGTITD 159 (492)
T ss_pred cCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHH-----HhcCcEEEEEEc-CCCccc
Confidence 124899999999997542221 1 12222 147888888831 33
Q ss_pred ---CCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 130 ---YRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 130 ---~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
....+.+.++++.|++.. +|+++|+|++|-.
T Consensus 160 I~Re~y~~aEe~~i~eLk~~~-----kPfiivlN~~dp~ 193 (492)
T TIGR02836 160 IPREDYVEAEERVIEELKELN-----KPFIILLNSTHPY 193 (492)
T ss_pred cccccchHHHHHHHHHHHhcC-----CCEEEEEECcCCC
Confidence 236677888999888875 9999999999943
No 206
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.28 E-value=6.6e-11 Score=101.60 Aligned_cols=112 Identities=17% Similarity=0.211 Sum_probs=67.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccc---------CC---------CCcceeEEEEEEEE-----CCeEEEEEeCCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVN---------SF---------QSEALRPVMVSRSK-----GGFTLNIIDTPGL 95 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~---------~~---------~~~t~~~~~~~~~~-----~g~~l~viDTPG~ 95 (298)
+|+++|..|+|||||+++|++....... .+ .+.+.........+ ....+.+|||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999865322110 00 01111111122222 2367899999998
Q ss_pred CCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 96 VEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 96 ~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.+.. ......+ ..+|++++|++... ..+.....+++..... + .|+++|+||+|..
T Consensus 82 ~~f~---~~~~~~~------~~aD~~llVvD~~~-~~~~~~~~~~~~~~~~---~--~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFM---DEVAAAL------RLSDGVVLVVDVVE-GVTSNTERLIRHAILE---G--LPIVLVINKIDRL 136 (213)
T ss_pred cchH---HHHHHHH------HhCCEEEEEEECCC-CCCHHHHHHHHHHHHc---C--CCEEEEEECcccC
Confidence 6532 1222222 47899999976653 2333334444433221 2 7999999999985
No 207
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.27 E-value=1.2e-10 Score=99.96 Aligned_cols=119 Identities=21% Similarity=0.262 Sum_probs=77.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC-CeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-GFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
.++|+++|..|+|||||+|++.+...............+........ ..++.+|||+|..+.. .....+ .
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~-------~~~~~y--~ 75 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYR-------SLRPEY--Y 75 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHH-------HHHHHH--h
Confidence 48999999999999999999999876433322111122222222211 4578999999984321 112121 1
Q ss_pred CCCCEEEEEEeCCC-CCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 116 KTIDVLLYADRLDA-YRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 116 ~~~d~vl~v~~~d~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
.+++++++|++... .++.+.-..+.+.+....+. ..++++|.||+|+..
T Consensus 76 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~--~~~iilv~nK~Dl~~ 125 (219)
T COG1100 76 RGANGILIVYDSTLRESSDELTEEWLEELRELAPD--DVPILLVGNKIDLFD 125 (219)
T ss_pred cCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCC--CceEEEEeccccccc
Confidence 68999999977765 33444455666677776542 289999999999963
No 208
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.26 E-value=7.8e-11 Score=98.09 Aligned_cols=123 Identities=18% Similarity=0.234 Sum_probs=79.5
Q ss_pred HHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHH
Q 022358 26 LLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA 105 (298)
Q Consensus 26 ~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~ 105 (298)
++.++... .+..+|+++|..||||||+++.|.......+. .|.........+.+..+.++|.+|-.....
T Consensus 4 ~~~~~~~~-~~~~~ililGl~~sGKTtll~~l~~~~~~~~~----pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~----- 73 (175)
T PF00025_consen 4 VLSKLKSK-KKEIKILILGLDGSGKTTLLNRLKNGEISETI----PTIGFNIEEIKYKGYSLTIWDLGGQESFRP----- 73 (175)
T ss_dssp HHHHCTTT-TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEE----EESSEEEEEEEETTEEEEEEEESSSGGGGG-----
T ss_pred HHHHhccc-CcEEEEEEECCCccchHHHHHHhhhccccccC----cccccccceeeeCcEEEEEEeccccccccc-----
Confidence 45555543 47899999999999999999999976543311 233344556677899999999999632111
Q ss_pred HHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCC--CCceEEEEEeCcCCC
Q 022358 106 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQ--IWRKSLLVLTHAQLC 165 (298)
Q Consensus 106 ~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~tk~D~~ 165 (298)
..+.+. ..+|+++||++..+.. .-.+..+.+.+.+... ...|+++++||.|..
T Consensus 74 --~w~~y~--~~~~~iIfVvDssd~~---~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~ 128 (175)
T PF00025_consen 74 --LWKSYF--QNADGIIFVVDSSDPE---RLQEAKEELKELLNDPELKDIPILILANKQDLP 128 (175)
T ss_dssp --GGGGGH--TTESEEEEEEETTGGG---GHHHHHHHHHHHHTSGGGTTSEEEEEEESTTST
T ss_pred --cceeec--cccceeEEEEecccce---eecccccchhhhcchhhcccceEEEEecccccc
Confidence 111112 6889999995554321 1122333444443321 248999999999984
No 209
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.26 E-value=3e-10 Score=97.57 Aligned_cols=120 Identities=15% Similarity=0.181 Sum_probs=69.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVT-VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~-~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
....++|+++|++|+|||||++.++...... ..+..+.......+........+.+|||||...... ... .+
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~----~~~---~~ 78 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGG----LRD---GY 78 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhh----hhH---HH
Confidence 4467999999999999999997655433211 111111111111111222346889999999643211 111 11
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
. ...|++++|++++....-..-..++..+..... + .|+++|+||+|+.
T Consensus 79 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 79 Y--IKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE-N--IPIVLVGNKVDVK 126 (215)
T ss_pred h--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECccCc
Confidence 1 477999999887652211112344555554432 2 7899999999984
No 210
>PRK10218 GTP-binding protein; Provisional
Probab=99.25 E-value=1.6e-10 Score=112.92 Aligned_cols=113 Identities=15% Similarity=0.164 Sum_probs=75.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccc---------------CCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVN---------------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 102 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~---------------~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~ 102 (298)
-+|+++|..++|||||+++|+........ ...+.|.........+++..+.+|||||..+...
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~-- 83 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG-- 83 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH--
Confidence 58999999999999999999964211111 0122334444556678899999999999865432
Q ss_pred HHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 103 YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 103 ~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.+...+ ..+|++++|++... .........+..+... ..|.++++||+|..
T Consensus 84 -~v~~~l------~~aDg~ILVVDa~~-G~~~qt~~~l~~a~~~-----gip~IVviNKiD~~ 133 (607)
T PRK10218 84 -EVERVM------SMVDSVLLVVDAFD-GPMPQTRFVTKKAFAY-----GLKPIVVINKVDRP 133 (607)
T ss_pred -HHHHHH------HhCCEEEEEEeccc-CccHHHHHHHHHHHHc-----CCCEEEEEECcCCC
Confidence 222222 58999999966653 3444445555544443 27889999999984
No 211
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.25 E-value=1.4e-10 Score=100.05 Aligned_cols=112 Identities=15% Similarity=0.227 Sum_probs=69.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCC---------------CCcceeEEEEEEEEC----------CeEEEEEeCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSF---------------QSEALRPVMVSRSKG----------GFTLNIIDTP 93 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~---------------~~~t~~~~~~~~~~~----------g~~l~viDTP 93 (298)
+|+++|..++|||||+++|+.......... .+-|.........+. +..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999985432110000 011111111222222 6689999999
Q ss_pred CCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 94 GLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 94 G~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
|..+... +....+ ..+|++++|++... .........++..... + .|+++|+||+|+.
T Consensus 82 G~~~f~~---~~~~~l------~~aD~~ilVvD~~~-g~~~~t~~~l~~~~~~---~--~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSS---EVTAAL------RLCDGALVVVDAVE-GVCVQTETVLRQALKE---R--VKPVLVINKIDRL 138 (222)
T ss_pred CccccHH---HHHHHH------HhcCeeEEEEECCC-CCCHHHHHHHHHHHHc---C--CCEEEEEECCCcc
Confidence 9965321 222223 58899999977664 3455555555544332 2 6899999999974
No 212
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.23 E-value=1.3e-10 Score=115.21 Aligned_cols=115 Identities=10% Similarity=0.092 Sum_probs=74.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEE--E--CCeEEEEEeCCCCCCCCcCcHHHHHHHH
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS--K--GGFTLNIIDTPGLVEAGYVNYQALELIK 110 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~--~--~g~~l~viDTPG~~~~~~~~~~~~~~i~ 110 (298)
.++.+|+++|.+|+|||||+++|.+..... +...+.|.....+... . .+..+++|||||..+ +.....
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-------F~~mr~ 313 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-------FSSMRS 313 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEEecCCceEEEEEECCcHHH-------HHHHHH
Confidence 367899999999999999999999876532 2223333332223322 2 357899999999732 211222
Q ss_pred hhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 111 GFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 111 ~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
... ..+|++++|++.+. .......+.+..+... ..|+|+|+||+|+.
T Consensus 314 rg~--~~aDiaILVVDA~d-Gv~~QT~E~I~~~k~~-----~iPiIVViNKiDl~ 360 (742)
T CHL00189 314 RGA--NVTDIAILIIAADD-GVKPQTIEAINYIQAA-----NVPIIVAINKIDKA 360 (742)
T ss_pred HHH--HHCCEEEEEEECcC-CCChhhHHHHHHHHhc-----CceEEEEEECCCcc
Confidence 222 57899999977764 3344444444444322 38999999999985
No 213
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.23 E-value=2.4e-10 Score=111.73 Aligned_cols=112 Identities=18% Similarity=0.212 Sum_probs=75.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccc-----cc----------CCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcH
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVT-----VN----------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY 103 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~-----~~----------~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~ 103 (298)
+|+++|..++|||||+++|+...... +. ...+.|.........+++..+.+|||||..+..
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~---- 78 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG---- 78 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH----
Confidence 79999999999999999998532110 00 012334455556678899999999999985432
Q ss_pred HHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 104 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 104 ~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+...+ ..+|++++|++... ........++..+... ..|.++|+||+|+.
T Consensus 79 ---~ev~~~l--~~aD~alLVVDa~~-G~~~qT~~~l~~a~~~-----~ip~IVviNKiD~~ 129 (594)
T TIGR01394 79 ---GEVERVL--GMVDGVLLLVDASE-GPMPQTRFVLKKALEL-----GLKPIVVINKIDRP 129 (594)
T ss_pred ---HHHHHHH--HhCCEEEEEEeCCC-CCcHHHHHHHHHHHHC-----CCCEEEEEECCCCC
Confidence 1222222 57899999966543 3444455555555543 27889999999984
No 214
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.23 E-value=1.8e-10 Score=99.44 Aligned_cols=114 Identities=14% Similarity=0.134 Sum_probs=71.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcc-----------------c-------cc------CCCCcceeEEEEEEEECCeEEE
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVV-----------------T-------VN------SFQSEALRPVMVSRSKGGFTLN 88 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~-----------------~-------~~------~~~~~t~~~~~~~~~~~g~~l~ 88 (298)
+|+++|..|+|||||+.+|+..... . .. ...+.|.........+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 5899999999999999999632110 0 00 1123455555667788999999
Q ss_pred EEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCC------CCCHHHHHHHHHHHHHhCCCCCceEEEEEeCc
Q 022358 89 IIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAY------RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (298)
Q Consensus 89 viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~------~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~ 162 (298)
++||||..+ +...+.... ..+|++++|++.... .........+... ...+. +|+++|+||+
T Consensus 81 liDtpG~~~-------~~~~~~~~~--~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~iiivvNK~ 147 (219)
T cd01883 81 ILDAPGHRD-------FVPNMITGA--SQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLGV---KQLIVAVNKM 147 (219)
T ss_pred EEECCChHH-------HHHHHHHHh--hhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcCC---CeEEEEEEcc
Confidence 999999732 111222111 578999999766542 1111222333222 22222 6899999999
Q ss_pred CCC
Q 022358 163 QLC 165 (298)
Q Consensus 163 D~~ 165 (298)
|+.
T Consensus 148 Dl~ 150 (219)
T cd01883 148 DDV 150 (219)
T ss_pred ccc
Confidence 985
No 215
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.23 E-value=4.3e-11 Score=97.79 Aligned_cols=57 Identities=25% Similarity=0.377 Sum_probs=47.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~ 95 (298)
...+|+++|.+|+|||||+|+|.+.....++..+++|+....+.. +..+.++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc---CCCEEEEECcCC
Confidence 468999999999999999999999988888888888776554442 345899999996
No 216
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.23 E-value=3e-10 Score=90.71 Aligned_cols=126 Identities=21% Similarity=0.303 Sum_probs=86.2
Q ss_pred HHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCc
Q 022358 23 LIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 102 (298)
Q Consensus 23 l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~ 102 (298)
+..++++++.+. ++++|+++|..|+||||+++.+.+.....+++ |..-...+.++.+.++.+||.-|.-.
T Consensus 3 ~lsilrk~k~ke-rE~riLiLGLdNsGKTti~~kl~~~~~~~i~p----t~gf~Iktl~~~~~~L~iwDvGGq~~----- 72 (185)
T KOG0073|consen 3 LLSILRKQKLKE-REVRILILGLDNSGKTTIVKKLLGEDTDTISP----TLGFQIKTLEYKGYTLNIWDVGGQKT----- 72 (185)
T ss_pred HHHHHHHHHhhh-heeEEEEEecCCCCchhHHHHhcCCCccccCC----ccceeeEEEEecceEEEEEEcCCcch-----
Confidence 445677777544 48999999999999999999999998533332 44445667788999999999999732
Q ss_pred HHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCC--CCceEEEEEeCcCCC
Q 022358 103 YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQ--IWRKSLLVLTHAQLC 165 (298)
Q Consensus 103 ~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~tk~D~~ 165 (298)
..+..+.|. ...|+++||++..+.+ . -.+....+++...++ +..+++++.||.|+.
T Consensus 73 --lr~~W~nYf--estdglIwvvDssD~~-r--~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 73 --LRSYWKNYF--ESTDGLIWVVDSSDRM-R--MQECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred --hHHHHHHhh--hccCeEEEEEECchHH-H--HHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 222222333 5889999996553311 1 123344444444332 457999999999984
No 217
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.23 E-value=1.1e-10 Score=92.93 Aligned_cols=99 Identities=22% Similarity=0.266 Sum_probs=62.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 117 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~ 117 (298)
-||+++|++|+|||||+++|.|.+... .-|. . ..+.+ .+|||||=+-. +..+...+.. ....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~-----~KTq---~--i~~~~---~~IDTPGEyiE---~~~~y~aLi~--ta~d 63 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRY-----KKTQ---A--IEYYD---NTIDTPGEYIE---NPRFYHALIV--TAQD 63 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCc-----Cccc---e--eEecc---cEEECChhhee---CHHHHHHHHH--HHhh
Confidence 379999999999999999999976411 0111 1 12222 35999996422 2223333221 2368
Q ss_pred CCEEEEEEeCCCCC--CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 118 IDVLLYADRLDAYR--VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 118 ~d~vl~v~~~d~~~--~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+|+|++|.+.+... +.+ .+...| .+|+|-|+||+|+.
T Consensus 64 ad~V~ll~dat~~~~~~pP-------~fa~~f----~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 64 ADVVLLLQDATEPRSVFPP-------GFASMF----NKPVIGVITKIDLP 102 (143)
T ss_pred CCEEEEEecCCCCCccCCc-------hhhccc----CCCEEEEEECccCc
Confidence 99999996665422 222 222333 28999999999995
No 218
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.21 E-value=8.6e-11 Score=99.95 Aligned_cols=107 Identities=15% Similarity=0.158 Sum_probs=66.9
Q ss_pred EcCCCCCHHHHHHHHhCCCcccccCCCCccee--EEEEEEEE--CCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCC
Q 022358 43 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALR--PVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (298)
Q Consensus 43 vG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~--~~~~~~~~--~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 118 (298)
+|..|||||||+++++...... .+.. |.. ........ ...++.+|||||......... .+. .++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~--~~~~-Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~-------~~~--~~a 68 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEK--KYVA-TLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRD-------GYY--IQG 68 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCC--CCCC-ceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhH-------HHh--cCC
Confidence 5999999999999999654321 1111 221 11122222 346889999999854321111 111 588
Q ss_pred CEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 119 DVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 119 d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
|++++|++++... +.. -..++..+.+... ..|+++|.||+|+.
T Consensus 69 d~~ilV~D~t~~~S~~~-i~~w~~~i~~~~~---~~piilvgNK~Dl~ 112 (200)
T smart00176 69 QCAIIMFDVTARVTYKN-VPNWHRDLVRVCE---NIPIVLCGNKVDVK 112 (200)
T ss_pred CEEEEEEECCChHHHHH-HHHHHHHHHHhCC---CCCEEEEEECcccc
Confidence 9999998887632 222 2346666666542 37999999999984
No 219
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.21 E-value=9e-10 Score=108.24 Aligned_cols=114 Identities=20% Similarity=0.197 Sum_probs=73.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccc--cCCCCcceeEEEEEEE-ECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTV--NSFQSEALRPVMVSRS-KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~--~~~~~~t~~~~~~~~~-~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
+.|.++|..++|||||+|+|+|.+.... ....+.|......... .++..+.+|||||.. .+...+....
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-------~fi~~m~~g~- 72 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-------KFLSNMLAGV- 72 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-------HHHHHHHHHh-
Confidence 3589999999999999999998643111 1112333332222222 256789999999973 2333332222
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.++|++++|++.+. ...+.+.+.+..+... +. .++++|+||+|+.
T Consensus 73 -~~~D~~lLVVda~e-g~~~qT~ehl~il~~l-gi---~~iIVVlNKiDlv 117 (614)
T PRK10512 73 -GGIDHALLVVACDD-GVMAQTREHLAILQLT-GN---PMLTVALTKADRV 117 (614)
T ss_pred -hcCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CeEEEEEECCccC
Confidence 58999999977664 3556666666655433 32 4578999999985
No 220
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.21 E-value=9.7e-11 Score=99.25 Aligned_cols=115 Identities=15% Similarity=0.162 Sum_probs=68.8
Q ss_pred ccEEEEEcCCCCCHHHHHH-HHhCCCcc---cccCCCCcce--eEEE-E-------EEEECC--eEEEEEeCCCCCCCCc
Q 022358 37 TLTILVMGKGGVGKSSTVN-SVIGERVV---TVNSFQSEAL--RPVM-V-------SRSKGG--FTLNIIDTPGLVEAGY 100 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN-~l~g~~~~---~~~~~~~~t~--~~~~-~-------~~~~~g--~~l~viDTPG~~~~~~ 100 (298)
.++|+++|..|+|||||++ .+.+.... ....+.++.. .... . ....+| ..+.+|||+|..+.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999996 55443210 0111111110 0000 0 012233 47899999998531
Q ss_pred CcHHHHHHHHhhhhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 101 VNYQALELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 101 ~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
. +. ....++|++++|++++... +......++..+..... ..|+++|.||+|+.
T Consensus 80 ~--------~~-~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~---~~piilvgNK~DL~ 133 (195)
T cd01873 80 D--------RR-FAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP---RVPVILVGCKLDLR 133 (195)
T ss_pred h--------hc-ccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhcc
Confidence 0 11 1226899999999987632 32222246666665542 27999999999984
No 221
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.21 E-value=1.7e-10 Score=94.44 Aligned_cols=109 Identities=17% Similarity=0.121 Sum_probs=70.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++|+++|.+|+|||||++.+++...... .+. +..........+| ..+.+|||+|... ..+ .
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~--~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~---~------ 63 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQL--ESP-EGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQF---A------ 63 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCC--CCC-CccceEEEEEECCEEEEEEEEECCCCCc-----hhH---H------
Confidence 4799999999999999998876543221 111 1111122344556 4688999999842 111 1
Q ss_pred CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|+++++.. +... ..+++.+...... ...|+++|.||+|+.
T Consensus 64 ~~~~~~ilv~d~~~~~sf~~~-~~~~~~i~~~~~~-~~~piilvgnK~Dl~ 112 (158)
T cd04103 64 SWVDAVIFVFSLENEASFQTV-YNLYHQLSSYRNI-SEIPLILVGTQDAIS 112 (158)
T ss_pred hcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCC-CCCCEEEEeeHHHhh
Confidence 4689999999888633 3322 3466666655321 237999999999974
No 222
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.21 E-value=2.9e-10 Score=98.39 Aligned_cols=114 Identities=14% Similarity=0.103 Sum_probs=73.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccC------------C-CCcce------------------------eEEEEEEE
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNS------------F-QSEAL------------------------RPVMVSRS 81 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~------------~-~~~t~------------------------~~~~~~~~ 81 (298)
+|+++|..++|||||++++.......... . .+-|. .......+
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999998532100000 0 00000 00001234
Q ss_pred ECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeC
Q 022358 82 KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH 161 (298)
Q Consensus 82 ~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk 161 (298)
..+..+.++||||.. .+.+.+...+....+|++++|++.+. ...+.+.+++..+.... .|+++|+||
T Consensus 81 ~~~~~i~liDtpG~~-------~~~~~~~~~~~~~~~D~~llVvda~~-g~~~~d~~~l~~l~~~~-----ip~ivvvNK 147 (224)
T cd04165 81 KSSKLVTFIDLAGHE-------RYLKTTLFGLTGYAPDYAMLVVAANA-GIIGMTKEHLGLALALN-----IPVFVVVTK 147 (224)
T ss_pred eCCcEEEEEECCCcH-------HHHHHHHHhhcccCCCEEEEEEECCC-CCcHHHHHHHHHHHHcC-----CCEEEEEEC
Confidence 457789999999973 23333333332247899999976654 46777888888777653 789999999
Q ss_pred cCCC
Q 022358 162 AQLC 165 (298)
Q Consensus 162 ~D~~ 165 (298)
+|+.
T Consensus 148 ~D~~ 151 (224)
T cd04165 148 IDLA 151 (224)
T ss_pred cccc
Confidence 9985
No 223
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.20 E-value=1.4e-10 Score=115.92 Aligned_cols=113 Identities=14% Similarity=0.117 Sum_probs=78.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcc--c---ccC------------CCCcceeEEEEEEEECCeEEEEEeCCCCCCCCc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVV--T---VNS------------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY 100 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~--~---~~~------------~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~ 100 (298)
.+|+++|..++|||||+|+|+..... . +.. ..+.|.........+++.++.+|||||..+...
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~ 90 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV 90 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH
Confidence 58999999999999999999743211 0 111 123455555667788999999999999975322
Q ss_pred CcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 101 VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 101 ~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+....+ ..+|++++|++... .....+..++..+.... .|+++|+||+|+.
T Consensus 91 ---~~~~~l------~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~~-----~p~ivviNK~D~~ 140 (689)
T TIGR00484 91 ---EVERSL------RVLDGAVAVLDAVG-GVQPQSETVWRQANRYE-----VPRIAFVNKMDKT 140 (689)
T ss_pred ---HHHHHH------HHhCEEEEEEeCCC-CCChhHHHHHHHHHHcC-----CCEEEEEECCCCC
Confidence 222222 47799999966554 34555556666554432 7899999999985
No 224
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.20 E-value=1.3e-10 Score=113.37 Aligned_cols=114 Identities=13% Similarity=0.092 Sum_probs=70.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeE--EEEEEEE----------------CCeEEEEEeCCCCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRP--VMVSRSK----------------GGFTLNIIDTPGLVE 97 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~--~~~~~~~----------------~g~~l~viDTPG~~~ 97 (298)
++..|+++|.+++|||||+|+|.+..+.. ....+.|.+. ....... ....+.+|||||...
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~-~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAK-REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccc-ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 56789999999999999999999986532 1111122211 1111110 012489999999743
Q ss_pred CCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 98 AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
... ....+ ...+|++++|++.+. .......+.+..+... ..|+++|+||+|+.
T Consensus 82 f~~-------l~~~~--~~~aD~~IlVvD~~~-g~~~qt~e~i~~l~~~-----~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 82 FTN-------LRKRG--GALADLAILIVDINE-GFKPQTQEALNILRMY-----KTPFVVAANKIDRI 134 (590)
T ss_pred HHH-------HHHHH--HhhCCEEEEEEECCc-CCCHhHHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence 211 11111 158999999977764 3445555555555433 27999999999985
No 225
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.20 E-value=7.5e-11 Score=97.83 Aligned_cols=57 Identities=28% Similarity=0.384 Sum_probs=48.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~ 95 (298)
..++++++|.+|+|||||+|+|+|...+.++..+++|...+.+.. +..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 458999999999999999999999998888999988886655443 346899999996
No 226
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=5.8e-10 Score=87.70 Aligned_cols=114 Identities=17% Similarity=0.227 Sum_probs=77.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeE--EEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRP--VMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~--~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
++|+++|..|+|||.|+..++..-. +.+ ++.|... ...+.+++| .++.+|||.|........+.+.
T Consensus 8 fkivlvgnagvgktclvrrftqglf-ppg--qgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyy------- 77 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLF-PPG--QGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYY------- 77 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCC-CCC--CCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHh-------
Confidence 7999999999999999999887643 211 2222221 122334444 5789999999854443333222
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++....-+--.+++..+.+..... .-.|+|.||.|+.
T Consensus 78 --rsahalilvydiscqpsfdclpewlreie~yan~k--vlkilvgnk~d~~ 125 (213)
T KOG0095|consen 78 --RSAHALILVYDISCQPSFDCLPEWLREIEQYANNK--VLKILVGNKIDLA 125 (213)
T ss_pred --hhcceEEEEEecccCcchhhhHHHHHHHHHHhhcc--eEEEeeccccchh
Confidence 57899999999987432233467888888886554 4568999999984
No 227
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.19 E-value=2e-10 Score=110.88 Aligned_cols=116 Identities=12% Similarity=0.155 Sum_probs=74.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCC--CcccccCC-------------------CCcceeEEEEEEEECCeEEEEEeCC
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGE--RVVTVNSF-------------------QSEALRPVMVSRSKGGFTLNIIDTP 93 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~--~~~~~~~~-------------------~~~t~~~~~~~~~~~g~~l~viDTP 93 (298)
.+..+|+++|..|+|||||+++|+-. .....+.. .+.+........++++..+.++|||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 35679999999999999999998632 11111111 0122233445677889999999999
Q ss_pred CCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 94 GLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 94 G~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
|..+.. .+....+ ..+|++++|++... .+......+++..... ..|+++++||+|+.
T Consensus 89 G~~df~---~~~~~~l------~~aD~aIlVvDa~~-gv~~~t~~l~~~~~~~-----~~PiivviNKiD~~ 145 (527)
T TIGR00503 89 GHEDFS---EDTYRTL------TAVDNCLMVIDAAK-GVETRTRKLMEVTRLR-----DTPIFTFMNKLDRD 145 (527)
T ss_pred ChhhHH---HHHHHHH------HhCCEEEEEEECCC-CCCHHHHHHHHHHHhc-----CCCEEEEEECcccc
Confidence 985322 1222222 47899999966553 3444444555433322 27999999999974
No 228
>PTZ00258 GTP-binding protein; Provisional
Probab=99.19 E-value=1.3e-10 Score=107.61 Aligned_cols=91 Identities=22% Similarity=0.264 Sum_probs=66.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC-----------------CeEEEEEeCCCCC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-----------------GFTLNIIDTPGLV 96 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-----------------g~~l~viDTPG~~ 96 (298)
....++|.++|.+|+|||||+|+|++... .+++++++|..+......+. +.++.++||||+.
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 45678999999999999999999998875 78889999988777665543 2358999999998
Q ss_pred CCCcCcHHHHHHHHhhhhcCCCCEEEEEEeC
Q 022358 97 EAGYVNYQALELIKGFLLNKTIDVLLYADRL 127 (298)
Q Consensus 97 ~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~ 127 (298)
.........-..+...+ ..+|++++|++.
T Consensus 97 ~ga~~g~gLg~~fL~~I--r~aD~il~VVd~ 125 (390)
T PTZ00258 97 KGASEGEGLGNAFLSHI--RAVDGIYHVVRA 125 (390)
T ss_pred cCCcchhHHHHHHHHHH--HHCCEEEEEEeC
Confidence 65433222211111111 589999999775
No 229
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.18 E-value=1.1e-10 Score=103.53 Aligned_cols=85 Identities=18% Similarity=0.212 Sum_probs=62.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe-----------------EEEEEeCCCCCCCCcCc
Q 022358 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF-----------------TLNIIDTPGLVEAGYVN 102 (298)
Q Consensus 40 IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-----------------~l~viDTPG~~~~~~~~ 102 (298)
|+++|.+|+|||||+|+|++... .+++++++|..+......+.+. ++.++||||+.......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 57899999999999999999987 7888899998877665555442 48999999998654433
Q ss_pred HHHHHHHHhhhhcCCCCEEEEEEeC
Q 022358 103 YQALELIKGFLLNKTIDVLLYADRL 127 (298)
Q Consensus 103 ~~~~~~i~~~~~~~~~d~vl~v~~~ 127 (298)
...-..+...+ ..+|++++|++.
T Consensus 80 ~glg~~fL~~i--~~~D~li~VV~~ 102 (274)
T cd01900 80 EGLGNKFLSHI--REVDAIAHVVRC 102 (274)
T ss_pred hHHHHHHHHHH--HhCCEEEEEEeC
Confidence 22221221111 589999999765
No 230
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.17 E-value=3.5e-10 Score=108.14 Aligned_cols=118 Identities=18% Similarity=0.125 Sum_probs=73.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccc--------------cC------------------CCCcceeEEEEEEE
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTV--------------NS------------------FQSEALRPVMVSRS 81 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~--------------~~------------------~~~~t~~~~~~~~~ 81 (298)
....++|+++|..++|||||+++|+....... +. ..+.|........+
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 45679999999999999999999986532111 00 01122333344456
Q ss_pred ECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeC
Q 022358 82 KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH 161 (298)
Q Consensus 82 ~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk 161 (298)
.++.++.++||||.. .+...+...+ ..+|++++|++.+. .....+.+.+.. ....+. +++++|+||
T Consensus 104 ~~~~~i~~iDTPGh~-------~f~~~~~~~l--~~aD~allVVDa~~-G~~~qt~~~~~l-~~~lg~---~~iIvvvNK 169 (474)
T PRK05124 104 TEKRKFIIADTPGHE-------QYTRNMATGA--STCDLAILLIDARK-GVLDQTRRHSFI-ATLLGI---KHLVVAVNK 169 (474)
T ss_pred cCCcEEEEEECCCcH-------HHHHHHHHHH--hhCCEEEEEEECCC-CccccchHHHHH-HHHhCC---CceEEEEEe
Confidence 678899999999953 2222222222 68999999966653 233333333222 233332 589999999
Q ss_pred cCCC
Q 022358 162 AQLC 165 (298)
Q Consensus 162 ~D~~ 165 (298)
+|+.
T Consensus 170 iD~~ 173 (474)
T PRK05124 170 MDLV 173 (474)
T ss_pred eccc
Confidence 9985
No 231
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.17 E-value=1.8e-10 Score=105.41 Aligned_cols=87 Identities=17% Similarity=0.215 Sum_probs=64.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC-----------------eEEEEEeCCCCCCCCc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-----------------FTLNIIDTPGLVEAGY 100 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~l~viDTPG~~~~~~ 100 (298)
++|+++|.+|+|||||+|+|++.. ..+++++++|..+......+.+ .++.++||||+.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 789999999999999999999998 4788889999887765554433 2589999999986544
Q ss_pred CcHHHHHHHHhhhhcCCCCEEEEEEeC
Q 022358 101 VNYQALELIKGFLLNKTIDVLLYADRL 127 (298)
Q Consensus 101 ~~~~~~~~i~~~~~~~~~d~vl~v~~~ 127 (298)
..+..-..+...+ ..+|++++|++.
T Consensus 82 ~g~glg~~fL~~i--~~aD~li~VVd~ 106 (364)
T PRK09601 82 KGEGLGNQFLANI--REVDAIVHVVRC 106 (364)
T ss_pred hHHHHHHHHHHHH--HhCCEEEEEEeC
Confidence 3322211111111 589999999776
No 232
>PRK12739 elongation factor G; Reviewed
Probab=99.17 E-value=3.2e-10 Score=113.33 Aligned_cols=115 Identities=16% Similarity=0.147 Sum_probs=79.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCc-----cccc------------CCCCcceeEEEEEEEECCeEEEEEeCCCCCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERV-----VTVN------------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 98 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~-----~~~~------------~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~ 98 (298)
+-.+|.++|+.++|||||+|+|+.... ..+. ...+.|.........+++.+++++||||+.+.
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 346899999999999999999975311 0111 12344555556677889999999999998542
Q ss_pred CcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 99 GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
. .++...+ ..+|++++|++... .....+..++..+.... .|.++++||+|+.
T Consensus 87 ~---~e~~~al------~~~D~~ilVvDa~~-g~~~qt~~i~~~~~~~~-----~p~iv~iNK~D~~ 138 (691)
T PRK12739 87 T---IEVERSL------RVLDGAVAVFDAVS-GVEPQSETVWRQADKYG-----VPRIVFVNKMDRI 138 (691)
T ss_pred H---HHHHHHH------HHhCeEEEEEeCCC-CCCHHHHHHHHHHHHcC-----CCEEEEEECCCCC
Confidence 1 1222222 47799999966543 35666667776665542 7889999999985
No 233
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.17 E-value=4.8e-10 Score=109.83 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=68.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccc-----C---------CCCcceeEEEEEEEE---CC--eEEEEEeCCCCCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVN-----S---------FQSEALRPVMVSRSK---GG--FTLNIIDTPGLVEA 98 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~-----~---------~~~~t~~~~~~~~~~---~g--~~l~viDTPG~~~~ 98 (298)
-+|+++|..++|||||+++|+........ . ..+.|.........+ ++ ..+.+|||||..+.
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 48999999999999999999865321110 0 112333333333333 22 57899999999653
Q ss_pred CcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 99 GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.. .+..++ ..+|++++|++.+. ..+......+....+. ..|+++|+||+|+.
T Consensus 84 ~~-------~v~~~l--~~aD~aILVvDat~-g~~~qt~~~~~~~~~~-----~ipiIiViNKiDl~ 135 (595)
T TIGR01393 84 SY-------EVSRSL--AACEGALLLVDAAQ-GIEAQTLANVYLALEN-----DLEIIPVINKIDLP 135 (595)
T ss_pred HH-------HHHHHH--HhCCEEEEEecCCC-CCCHhHHHHHHHHHHc-----CCCEEEEEECcCCC
Confidence 21 222222 47899999966553 2333333332222221 26899999999984
No 234
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.17 E-value=2e-10 Score=113.77 Aligned_cols=118 Identities=14% Similarity=0.092 Sum_probs=74.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccC----------CC----------------------CcceeEEEEEEE
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS----------FQ----------------------SEALRPVMVSRS 81 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~----------~~----------------------~~t~~~~~~~~~ 81 (298)
..+.++|+++|.+++|||||+|+|+......... .. +.|........+
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 3466899999999999999999999754322110 11 122233334556
Q ss_pred ECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeC
Q 022358 82 KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH 161 (298)
Q Consensus 82 ~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk 161 (298)
.++.++.++||||..+ +...+... ...+|++++|++.+. .....+.+.+..+... +. +++++|+||
T Consensus 101 ~~~~~~~liDtPG~~~-------f~~~~~~~--~~~aD~~llVvda~~-g~~~~t~e~~~~~~~~-~~---~~iivvvNK 166 (632)
T PRK05506 101 TPKRKFIVADTPGHEQ-------YTRNMVTG--ASTADLAIILVDARK-GVLTQTRRHSFIASLL-GI---RHVVLAVNK 166 (632)
T ss_pred cCCceEEEEECCChHH-------HHHHHHHH--HHhCCEEEEEEECCC-CccccCHHHHHHHHHh-CC---CeEEEEEEe
Confidence 6788999999999632 22222221 258999999976653 2333333333333332 32 688999999
Q ss_pred cCCC
Q 022358 162 AQLC 165 (298)
Q Consensus 162 ~D~~ 165 (298)
+|+.
T Consensus 167 ~D~~ 170 (632)
T PRK05506 167 MDLV 170 (632)
T ss_pred cccc
Confidence 9985
No 235
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.17 E-value=4.1e-10 Score=106.67 Aligned_cols=118 Identities=12% Similarity=0.142 Sum_probs=74.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccc--------------cc----------------CCCCcceeEEEEEEEECC
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVT--------------VN----------------SFQSEALRPVMVSRSKGG 84 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~--------------~~----------------~~~~~t~~~~~~~~~~~g 84 (298)
...++|+++|.+++|||||+++|+...... .+ ...+.|..........++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 356899999999999999999998431100 00 012344455555667778
Q ss_pred eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCC--CHHHHHHHHHHHHHhCCCCCceEEEEEeCc
Q 022358 85 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV--DDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (298)
Q Consensus 85 ~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~--~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~ 162 (298)
..+.+|||||.. ++...+.... ..+|++++|++.+...+ .......+ .+....+. .++++|+||+
T Consensus 85 ~~i~iiDtpGh~-------~f~~~~~~~~--~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~~~---~~iIVviNK~ 151 (426)
T TIGR00483 85 YEVTIVDCPGHR-------DFIKNMITGA--SQADAAVLVVAVGDGEFEVQPQTREHA-FLARTLGI---NQLIVAINKM 151 (426)
T ss_pred eEEEEEECCCHH-------HHHHHHHhhh--hhCCEEEEEEECCCCCcccCCchHHHH-HHHHHcCC---CeEEEEEECh
Confidence 899999999963 2222222222 57999999977765321 11112212 12233332 5899999999
Q ss_pred CCC
Q 022358 163 QLC 165 (298)
Q Consensus 163 D~~ 165 (298)
|+.
T Consensus 152 Dl~ 154 (426)
T TIGR00483 152 DSV 154 (426)
T ss_pred hcc
Confidence 985
No 236
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=2.3e-10 Score=95.42 Aligned_cols=117 Identities=19% Similarity=0.225 Sum_probs=79.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeE--EEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRP--VMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKG 111 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~--~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~ 111 (298)
.-++|+++|.+|||||+++-.+....... .+. .|... ..-....+| ..+.+|||.|...... .+..
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~--~~~-sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~t-------i~~s 80 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNT--SFI-STIGIDFKIKTIELDGKKIKLQIWDTAGQERFRT-------ITTA 80 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcC--Ccc-ceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHH-------HHHH
Confidence 45899999999999999998887665321 111 12111 111233344 4679999999854332 2222
Q ss_pred hhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 112 ~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
+. .+++.+++|+++....--+....+++.+.+.-.+. .+.++|.||+|+..
T Consensus 81 Yy--rgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~--v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 81 YY--RGAMGILLVYDITNEKSFENIRNWIKNIDEHASDD--VVKILVGNKCDLEE 131 (207)
T ss_pred HH--hhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCC--CcEEEeeccccccc
Confidence 22 58999999999987553344456999999887654 89999999999854
No 237
>PRK00007 elongation factor G; Reviewed
Probab=99.15 E-value=7.5e-10 Score=110.70 Aligned_cols=113 Identities=15% Similarity=0.161 Sum_probs=78.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHh---CCCcc--ccc------------CCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCc
Q 022358 38 LTILVMGKGGVGKSSTVNSVI---GERVV--TVN------------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY 100 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~---g~~~~--~~~------------~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~ 100 (298)
.+|+++|..++|||||+|+|+ |.... .+. ...+.|.........+.+..++++||||..+...
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ 90 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTI 90 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHH
Confidence 599999999999999999997 32110 111 1233455555566788899999999999854211
Q ss_pred CcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 101 VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 101 ~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
++...+ ..+|++++|++... .....+..++..+.+.. .|.++++||+|..
T Consensus 91 ---ev~~al------~~~D~~vlVvda~~-g~~~qt~~~~~~~~~~~-----~p~iv~vNK~D~~ 140 (693)
T PRK00007 91 ---EVERSL------RVLDGAVAVFDAVG-GVEPQSETVWRQADKYK-----VPRIAFVNKMDRT 140 (693)
T ss_pred ---HHHHHH------HHcCEEEEEEECCC-CcchhhHHHHHHHHHcC-----CCEEEEEECCCCC
Confidence 222222 47799999965443 46667777777666553 7889999999985
No 238
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.15 E-value=3.4e-10 Score=106.39 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=72.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccc--------------cC------------------CCCcceeEEEEEEEECCe
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTV--------------NS------------------FQSEALRPVMVSRSKGGF 85 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~--------------~~------------------~~~~t~~~~~~~~~~~g~ 85 (298)
++|+++|..++|||||+++|+....... +. ..+.|........++++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 6899999999999999999975421110 00 012233444455667788
Q ss_pred EEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 86 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 86 ~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
++.++||||..+ +...+...+ ..+|++++|++.+. .......+.+..+.. .+. +++++|+||+|..
T Consensus 81 ~~~liDtPGh~~-------f~~~~~~~~--~~aD~allVVda~~-G~~~qt~~~~~~~~~-~~~---~~iivviNK~D~~ 146 (406)
T TIGR02034 81 KFIVADTPGHEQ-------YTRNMATGA--STADLAVLLVDARK-GVLEQTRRHSYIASL-LGI---RHVVLAVNKMDLV 146 (406)
T ss_pred EEEEEeCCCHHH-------HHHHHHHHH--hhCCEEEEEEECCC-CCccccHHHHHHHHH-cCC---CcEEEEEEecccc
Confidence 999999999632 222222222 58999999976653 344444444433333 232 5789999999985
No 239
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=4.6e-10 Score=91.58 Aligned_cols=122 Identities=15% Similarity=0.165 Sum_probs=79.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCC-CCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSF-QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~-~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
.++++++|.+|+|||+|+-..+......+... -+.......++......++.||||.|...... ..+.+-
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frs-------v~~syY-- 76 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRS-------VTRSYY-- 76 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHH-------HHHHHh--
Confidence 47899999999999999999998876443321 11111122333334455789999999843221 111111
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCCC
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 169 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~ 169 (298)
.++-..|+|++++....-..-..+|..+++...++ .-++++.||+|+...++
T Consensus 77 r~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~N--mvImLiGNKsDL~~rR~ 128 (216)
T KOG0098|consen 77 RGAAGALLVYDITRRESFNHLTSWLEDARQHSNEN--MVIMLIGNKSDLEARRE 128 (216)
T ss_pred ccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCC--cEEEEEcchhhhhcccc
Confidence 57788999999986332223456777777776444 67899999999964443
No 240
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.13 E-value=2.3e-10 Score=93.33 Aligned_cols=58 Identities=26% Similarity=0.436 Sum_probs=48.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCC
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~ 95 (298)
....+++++|.+|+||||++|+|++.....++..+++|.....+.. +..+.++||||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 4678999999999999999999999887677777888877665443 246899999996
No 241
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.12 E-value=8.5e-10 Score=95.44 Aligned_cols=121 Identities=18% Similarity=0.097 Sum_probs=69.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE-CCeEEEEEeCCCCCCCCcCc--HHHHHHHHhhhhc
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYVN--YQALELIKGFLLN 115 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~l~viDTPG~~~~~~~~--~~~~~~i~~~~~~ 115 (298)
||+++|+.|+||||..+.+++.-.+.....-+.|.......... ....+.+||.||..+..... .+. +.+-
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~-~~if----- 74 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQR-EEIF----- 74 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCH-HHHH-----
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccH-HHHH-----
Confidence 69999999999999999999875433333334455554444443 45599999999997643221 011 1111
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+++++||+++....+.+.-..+...+......+...++-+.+.|+|+.
T Consensus 75 ~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l 124 (232)
T PF04670_consen 75 SNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLL 124 (232)
T ss_dssp CTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS
T ss_pred hccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccC
Confidence 68899999977764333333233333333333223347899999999985
No 242
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.12 E-value=4.8e-10 Score=109.58 Aligned_cols=115 Identities=16% Similarity=0.150 Sum_probs=70.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeE--EEEEEEE----CC------------eEEEEEeCCCCC
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRP--VMVSRSK----GG------------FTLNIIDTPGLV 96 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~--~~~~~~~----~g------------~~l~viDTPG~~ 96 (298)
.++..|+++|.+|+|||||+|+|.+..+.... ..+.|.+. ....... .+ ..+++|||||..
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~-~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKE-AGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCC-CCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 46789999999999999999999987543211 11111111 1111000 00 127899999985
Q ss_pred CCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 97 EAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 97 ~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+... .... ....+|++++|++.+. .+.......+..+... ..|+++++||+|+.
T Consensus 83 ~f~~-------~~~~--~~~~aD~~IlVvDa~~-g~~~qt~e~i~~~~~~-----~vpiIvviNK~D~~ 136 (586)
T PRK04004 83 AFTN-------LRKR--GGALADIAILVVDINE-GFQPQTIEAINILKRR-----KTPFVVAANKIDRI 136 (586)
T ss_pred HHHH-------HHHH--hHhhCCEEEEEEECCC-CCCHhHHHHHHHHHHc-----CCCEEEEEECcCCc
Confidence 4321 1111 1157899999977664 3445555555554432 27899999999984
No 243
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.12 E-value=5.9e-11 Score=100.03 Aligned_cols=74 Identities=22% Similarity=0.355 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCc--------ccccCCCCcceeEEEEEEEECCeEEEEE
Q 022358 19 TQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERV--------VTVNSFQSEALRPVMVSRSKGGFTLNII 90 (298)
Q Consensus 19 ~~~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~--------~~~~~~~~~t~~~~~~~~~~~g~~l~vi 90 (298)
...++.++++.+.+......+++++|.+|+|||||||+|++... ..++..+++|.....+.... .+.+|
T Consensus 109 ~~~gi~eL~~~l~~~l~~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~ 185 (190)
T cd01855 109 KGWGVEELINAIKKLAKKGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLY 185 (190)
T ss_pred CCCCHHHHHHHHHHHhhcCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEE
Confidence 33445555565555444668999999999999999999998643 24455667777666555432 57999
Q ss_pred eCCCC
Q 022358 91 DTPGL 95 (298)
Q Consensus 91 DTPG~ 95 (298)
||||+
T Consensus 186 DtPG~ 190 (190)
T cd01855 186 DTPGI 190 (190)
T ss_pred eCcCC
Confidence 99996
No 244
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.12 E-value=1.3e-09 Score=94.53 Aligned_cols=108 Identities=18% Similarity=0.243 Sum_probs=71.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCc-ccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERV-VTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~-~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..+..|+++|.+|+|||||+|+|++... ...+...+ + .......+.++.++||||.. ....+.+
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~----i~i~~~~~~~i~~vDtPg~~------~~~l~~a---- 101 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-P----ITVVTGKKRRLTFIECPNDI------NAMIDIA---- 101 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-c----EEEEecCCceEEEEeCCchH------HHHHHHH----
Confidence 4567899999999999999999997632 11111111 1 11122367889999999852 2333333
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCce-EEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~ 165 (298)
..+|+++++++... .+...+..++..+.... .| +++|+||+|+.
T Consensus 102 --k~aDvVllviDa~~-~~~~~~~~i~~~l~~~g-----~p~vi~VvnK~D~~ 146 (225)
T cd01882 102 --KVADLVLLLIDASF-GFEMETFEFLNILQVHG-----FPRVMGVLTHLDLF 146 (225)
T ss_pred --HhcCEEEEEEecCc-CCCHHHHHHHHHHHHcC-----CCeEEEEEeccccC
Confidence 47899999965542 35666667777665542 45 45699999986
No 245
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.11 E-value=4.3e-10 Score=100.94 Aligned_cols=66 Identities=20% Similarity=0.395 Sum_probs=54.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHH
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ 104 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~ 104 (298)
..++++++|.+|+||||++|+|++.....+++.+++|...+.+.. +..+.++||||+..+...+++
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~~~~~~~~ 185 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL---GKGLELLDTPGILWPKLEDQE 185 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe---CCcEEEEECCCcCCCCCCcHH
Confidence 568999999999999999999999988888888888877654332 346899999999877655544
No 246
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.11 E-value=5.4e-10 Score=94.61 Aligned_cols=121 Identities=20% Similarity=0.222 Sum_probs=76.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
...+|+++|.+|+|||+++..+++.... ..+.++...........++ ..+.|+||+|..+.....+.
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~--~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~--------- 70 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFV--EDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDL--------- 70 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccc--cccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHH---------
Confidence 4579999999999999999888877642 2333332222222333333 46789999995443322211
Q ss_pred hcCCCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDL-DRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 169 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~ 169 (298)
.....|++++|+++++.. +.. ...+.+.|.+..+.. +.|+++|.||+|+.....
T Consensus 71 ~~~~~~gF~lVysitd~~-SF~~~~~l~~~I~r~~~~~-~~PivlVGNK~Dl~~~R~ 125 (196)
T KOG0395|consen 71 YIRNGDGFLLVYSITDRS-SFEEAKQLREQILRVKGRD-DVPIILVGNKCDLERERQ 125 (196)
T ss_pred hhccCcEEEEEEECCCHH-HHHHHHHHHHHHHHhhCcC-CCCEEEEEEcccchhccc
Confidence 115779999999999733 333 344555564444432 379999999999964333
No 247
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.11 E-value=8.7e-10 Score=106.50 Aligned_cols=115 Identities=10% Similarity=0.153 Sum_probs=74.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC--CcccccCC-------------------CCcceeEEEEEEEECCeEEEEEeCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE--RVVTVNSF-------------------QSEALRPVMVSRSKGGFTLNIIDTPG 94 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~--~~~~~~~~-------------------~~~t~~~~~~~~~~~g~~l~viDTPG 94 (298)
+..+|+++|..|+|||||+++|+.. .....+.. .+.+.........+++..+.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 4579999999999999999999732 11111110 01122233455778899999999999
Q ss_pred CCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 95 LVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 95 ~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+.. .+....+ ..+|++++|++... ........+++..... ..|+++++||+|..
T Consensus 89 ~~df~---~~~~~~l------~~aD~aIlVvDa~~-gv~~~t~~l~~~~~~~-----~iPiiv~iNK~D~~ 144 (526)
T PRK00741 89 HEDFS---EDTYRTL------TAVDSALMVIDAAK-GVEPQTRKLMEVCRLR-----DTPIFTFINKLDRD 144 (526)
T ss_pred chhhH---HHHHHHH------HHCCEEEEEEecCC-CCCHHHHHHHHHHHhc-----CCCEEEEEECCccc
Confidence 86432 1222222 47899999966553 3444444454443332 28999999999974
No 248
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=4.4e-10 Score=93.49 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=77.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
-++|+++|.+|+|||-|....+..+....+. ..-...-......++| .+..||||.|..........+
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF~~~Sk-sTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaY--------- 83 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESK-STIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAY--------- 83 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccccCcccc-cceeEEEEeeceeecCcEEEEeeecccchhhhccccchh---------
Confidence 4799999999999999998888665422211 1001111122233444 467899999985433222111
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..++...|+|++++....-+.-.++++.|+.....+ .++++|.||+|+..
T Consensus 84 YrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~n--ivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 84 YRGAVGALLVYDITRRQTFENVERWLKELRDHADSN--IVIMLVGNKSDLNH 133 (222)
T ss_pred hcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCC--eEEEEeecchhhhh
Confidence 168999999999876332223456778888877665 89999999999954
No 249
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.10 E-value=4.4e-10 Score=97.18 Aligned_cols=163 Identities=18% Similarity=0.263 Sum_probs=101.6
Q ss_pred hccccCCchhhHHHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccc---CCCCcceeEEEEEEEECC-
Q 022358 9 WAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVN---SFQSEALRPVMVSRSKGG- 84 (298)
Q Consensus 9 ~~~~~~l~~~~~~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~---~~~~~t~~~~~~~~~~~g- 84 (298)
-.|+.+||... .++--+ .+=.++|+-+|.||.|||||++.|++....... ..+........|.....+
T Consensus 22 HvGFdsLPdQL-------V~ksv~-~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnv 93 (406)
T KOG3859|consen 22 HVGFDSLPDQL-------VNKSVS-QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNV 93 (406)
T ss_pred ccCcccChHHH-------HHHHHh-cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCe
Confidence 35678887542 222222 234699999999999999999999987642211 112222223333333233
Q ss_pred -eEEEEEeCCCCCCCCcCcHH---HHHHH--------------Hhhh---hcCCCCEEEEEEeCCCCCCCHHHHHHHHHH
Q 022358 85 -FTLNIIDTPGLVEAGYVNYQ---ALELI--------------KGFL---LNKTIDVLLYADRLDAYRVDDLDRQIIKAV 143 (298)
Q Consensus 85 -~~l~viDTPG~~~~~~~~~~---~~~~i--------------~~~~---~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l 143 (298)
.+++|+||.|++|.-..++. +.+.+ ++.+ -+.++|++||++.+++..+...|.-.++.+
T Consensus 94 rlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~L 173 (406)
T KOG3859|consen 94 RLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKL 173 (406)
T ss_pred eEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHH
Confidence 36899999999973222211 11111 1111 247999999999998877888888888888
Q ss_pred HHHhCCCCCceEEEEEeCcCCCCCCCCChHHHhhhccHHHHHHHHhh
Q 022358 144 TGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLG 190 (298)
Q Consensus 144 ~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~ 190 (298)
.+. .++|.|+.|+|.. .-++..+.+.+.+.+++...
T Consensus 174 dsk------VNIIPvIAKaDti-----sK~eL~~FK~kimsEL~sng 209 (406)
T KOG3859|consen 174 DSK------VNIIPVIAKADTI-----SKEELKRFKIKIMSELVSNG 209 (406)
T ss_pred hhh------hhhHHHHHHhhhh-----hHHHHHHHHHHHHHHHHhcC
Confidence 776 7999999999974 22233333344555555443
No 250
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.10 E-value=1.4e-09 Score=106.74 Aligned_cols=113 Identities=17% Similarity=0.129 Sum_probs=68.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccc----c----C------CCCcceeEEEEEEEEC-----CeEEEEEeCCCCCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTV----N----S------FQSEALRPVMVSRSKG-----GFTLNIIDTPGLVEA 98 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~----~----~------~~~~t~~~~~~~~~~~-----g~~l~viDTPG~~~~ 98 (298)
-+|+++|..++|||||+++|+....... . . ..+.|.........+. +..+.+|||||..+.
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 5899999999999999999986421100 0 0 1122333333333332 567999999999653
Q ss_pred CcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 99 GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
. ..+.+++ ..+|++++|++.+. .....+...+...... ..|+++|+||+|+.
T Consensus 88 ~-------~~v~~sl--~~aD~aILVVDas~-gv~~qt~~~~~~~~~~-----~lpiIvViNKiDl~ 139 (600)
T PRK05433 88 S-------YEVSRSL--AACEGALLVVDASQ-GVEAQTLANVYLALEN-----DLEIIPVLNKIDLP 139 (600)
T ss_pred H-------HHHHHHH--HHCCEEEEEEECCC-CCCHHHHHHHHHHHHC-----CCCEEEEEECCCCC
Confidence 2 1222222 47899999966653 2443333333332221 27899999999984
No 251
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.08 E-value=6.9e-10 Score=99.08 Aligned_cols=65 Identities=22% Similarity=0.390 Sum_probs=52.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcH
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY 103 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~ 103 (298)
..++++++|.+|+||||++|+|++.....++..+++|...+.+.. +..+.++||||+......+.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPG~~~~~~~~~ 181 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL---SDGLELLDTPGILWPKFEDQ 181 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe---CCCEEEEECCCcccCCCCch
Confidence 468999999999999999999999987788888888877654443 23689999999976654443
No 252
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.08 E-value=1.1e-09 Score=103.30 Aligned_cols=123 Identities=20% Similarity=0.246 Sum_probs=86.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEE-EEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV-MVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~-~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
...++||+++|..|+||||||-+++.++.. ...|..-.... .....-......++||..-. .......+++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~--~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~---~~~~~l~~Ei--- 77 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFV--DAVPRRLPRILIPADVTPENVPTSIVDTSSDS---DDRLCLRKEI--- 77 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhcc--ccccccCCccccCCccCcCcCceEEEeccccc---chhHHHHHHH---
Confidence 446799999999999999999999998642 22221110000 01112234468999998432 1222334555
Q ss_pred hhcCCCCEEEEEEeCCC-CCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCC
Q 022358 113 LLNKTIDVLLYADRLDA-YRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 167 (298)
.++|++++++.+|. ..++.....|+-.+++.+|+....|+|+|.||+|....
T Consensus 78 ---rkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~ 130 (625)
T KOG1707|consen 78 ---RKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN 130 (625)
T ss_pred ---hhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence 48999999988886 34666778899999999998888999999999998533
No 253
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.08 E-value=3.4e-09 Score=99.73 Aligned_cols=121 Identities=13% Similarity=0.136 Sum_probs=69.7
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhCCCcc--cccCCCCcceeEEE----------------EEEE--E---C-----
Q 022358 32 QENVNTLTILVMGKGGVGKSSTVNSVIGERVV--TVNSFQSEALRPVM----------------VSRS--K---G----- 83 (298)
Q Consensus 32 ~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~--~~~~~~~~t~~~~~----------------~~~~--~---~----- 83 (298)
+.....++|+++|..++|||||+.+|.+.... ......+.|..... +... . +
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 34557799999999999999999999764210 00001111221110 1111 0 0
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcC
Q 022358 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (298)
Q Consensus 84 g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 163 (298)
...+.++||||.. ++...+... ...+|++++|++.+...........+..+.. .+. .++++|+||+|
T Consensus 84 ~~~i~liDtPG~~-------~f~~~~~~~--~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i---~~iiVVlNK~D 150 (411)
T PRK04000 84 LRRVSFVDAPGHE-------TLMATMLSG--AALMDGAILVIAANEPCPQPQTKEHLMALDI-IGI---KNIVIVQNKID 150 (411)
T ss_pred ccEEEEEECCCHH-------HHHHHHHHH--HhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEEeec
Confidence 2579999999963 222222211 1478999999666531113334444444433 221 57899999999
Q ss_pred CC
Q 022358 164 LC 165 (298)
Q Consensus 164 ~~ 165 (298)
+.
T Consensus 151 l~ 152 (411)
T PRK04000 151 LV 152 (411)
T ss_pred cc
Confidence 85
No 254
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.07 E-value=1.9e-09 Score=108.18 Aligned_cols=116 Identities=14% Similarity=0.182 Sum_probs=72.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccc---------ccCC------CCcceeEE----EEEEEECCeEEEEEeCCCC
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVT---------VNSF------QSEALRPV----MVSRSKGGFTLNIIDTPGL 95 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~---------~~~~------~~~t~~~~----~~~~~~~g~~l~viDTPG~ 95 (298)
..-.+|+++|..|+|||||+++|+...... ...+ .+.|.... ....++.+..+.++||||.
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 345799999999999999999997431100 0011 11122211 1224567789999999999
Q ss_pred CCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 96 VEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 96 ~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.+.. .+....+ ..+|++++|++... ........+++.+.+. ..|.++++||+|..
T Consensus 97 ~~f~---~~~~~al------~~aD~~llVvda~~-g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~ 151 (720)
T TIGR00490 97 VDFG---GDVTRAM------RAVDGAIVVVCAVE-GVMPQTETVLRQALKE-----NVKPVLFINKVDRL 151 (720)
T ss_pred cccH---HHHHHHH------HhcCEEEEEEecCC-CCCccHHHHHHHHHHc-----CCCEEEEEEChhcc
Confidence 7633 2333333 57899999966543 2444444454443332 16778999999984
No 255
>PRK13351 elongation factor G; Reviewed
Probab=99.07 E-value=1.1e-09 Score=109.52 Aligned_cols=115 Identities=11% Similarity=0.111 Sum_probs=75.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcc--cccC---------------CCCcceeEEEEEEEECCeEEEEEeCCCCCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVV--TVNS---------------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 98 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~--~~~~---------------~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~ 98 (298)
+-.+|+++|..|+|||||+++|+..... ..+. ..+.|.........+.+..+.+|||||..+.
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 3469999999999999999999853210 0000 0122333334566788999999999998542
Q ss_pred CcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 99 GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.. .....+ ..+|++++|++.+. .........++.+... ..|+++|+||+|+.
T Consensus 87 ~~---~~~~~l------~~aD~~ilVvd~~~-~~~~~~~~~~~~~~~~-----~~p~iiviNK~D~~ 138 (687)
T PRK13351 87 TG---EVERSL------RVLDGAVVVFDAVT-GVQPQTETVWRQADRY-----GIPRLIFINKMDRV 138 (687)
T ss_pred HH---HHHHHH------HhCCEEEEEEeCCC-CCCHHHHHHHHHHHhc-----CCCEEEEEECCCCC
Confidence 21 222222 57899999976654 3444445555544433 27999999999985
No 256
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.07 E-value=4.2e-10 Score=93.41 Aligned_cols=117 Identities=17% Similarity=0.259 Sum_probs=63.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE---CCeEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK---GGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~---~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
.-.|+++|+.|+|||+|+..|.......+ ..+. .+.. .... .+..+.+||+||...- ..+..+.+.
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T--~tS~--e~n~-~~~~~~~~~~~~~lvD~PGH~rl---r~~~~~~~~--- 71 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPT--VTSM--ENNI-AYNVNNSKGKKLRLVDIPGHPRL---RSKLLDELK--- 71 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B-----S--SEEE-ECCGSSTCGTCECEEEETT-HCC---CHHHHHHHH---
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCe--eccc--cCCc-eEEeecCCCCEEEEEECCCcHHH---HHHHHHhhh---
Confidence 45799999999999999999997643211 1111 1111 2222 4568999999998543 234443321
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHH----HHHhCCCCCceEEEEEeCcCCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAV----TGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l----~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+.+-+|+|| +|+..+...-.+..+.| ...--.....|++|+.||.|+..
T Consensus 72 ~~~~~k~IIfv--vDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 72 YLSNAKGIIFV--VDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp HHGGEEEEEEE--EETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred chhhCCEEEEE--EeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 12578899999 55433222222232322 22221233589999999999964
No 257
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.06 E-value=5.8e-09 Score=94.86 Aligned_cols=43 Identities=30% Similarity=0.336 Sum_probs=32.7
Q ss_pred chhhHHHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHh
Q 022358 16 PSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 16 ~~~~~~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~ 58 (298)
.++.+....++++.+.......+.|.+.|.+|+|||||++.|.
T Consensus 35 ~~~~~~~~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~ 77 (332)
T PRK09435 35 RPDHRALAQELLDALLPHTGNALRIGITGVPGVGKSTFIEALG 77 (332)
T ss_pred CchhhHHHHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHH
Confidence 3333334556777776656678999999999999999999875
No 258
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.06 E-value=4.7e-09 Score=98.76 Aligned_cols=118 Identities=14% Similarity=0.120 Sum_probs=68.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccc--cCCCCcceeEE----------------EEEEE----------ECCeE
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTV--NSFQSEALRPV----------------MVSRS----------KGGFT 86 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~--~~~~~~t~~~~----------------~~~~~----------~~g~~ 86 (298)
+..++|+++|..++|||||+++|.+...... ....+.|.... .+... ..+..
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 3578999999999999999999987522100 00001111100 00010 12468
Q ss_pred EEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 87 LNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 87 l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+.++||||.. ++...+.... ..+|++++|++.+.........+.+..+ ...+- +++++|+||+|+.
T Consensus 82 i~liDtPGh~-------~f~~~~~~g~--~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi---~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 82 VSFVDAPGHE-------TLMATMLSGA--ALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGI---KNIVIVQNKIDLV 147 (406)
T ss_pred EEEEECCCHH-------HHHHHHHHHH--HHCCEEEEEEECCCCccccchHHHHHHH-HHcCC---CeEEEEEEccccC
Confidence 9999999973 2222332222 4789999997766421133334444433 33332 5799999999985
No 259
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.05 E-value=6.4e-10 Score=98.38 Aligned_cols=85 Identities=22% Similarity=0.372 Sum_probs=71.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCc----HHHHHHHHhh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN----YQALELIKGF 112 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~----~~~~~~i~~~ 112 (298)
.-+++++|.+++|||||+|.|++.+. .++.++.+|..+.....+++|.++.++|+||+.+..... .+++..+
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~--- 138 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA--- 138 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCc-cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeee---
Confidence 46999999999999999999999876 778899999999999999999999999999999755333 2343333
Q ss_pred hhcCCCCEEEEEEeCC
Q 022358 113 LLNKTIDVLLYADRLD 128 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d 128 (298)
..+|+|++|++++
T Consensus 139 ---R~ADlIiiVld~~ 151 (365)
T COG1163 139 ---RNADLIIIVLDVF 151 (365)
T ss_pred ---ccCCEEEEEEecC
Confidence 5899999996655
No 260
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.05 E-value=2.5e-09 Score=101.53 Aligned_cols=117 Identities=16% Similarity=0.150 Sum_probs=73.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcc-----------------c-------cc------CCCCcceeEEEEEEEECC
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVV-----------------T-------VN------SFQSEALRPVMVSRSKGG 84 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~-----------------~-------~~------~~~~~t~~~~~~~~~~~g 84 (298)
...++|+++|..++|||||+.+|+..... . .. ...+.|........++++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 45799999999999999999998742100 0 00 012234444455667788
Q ss_pred eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCC------CHHHHHHHHHHHHHhCCCCCceEEEE
Q 022358 85 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV------DDLDRQIIKAVTGTFGKQIWRKSLLV 158 (298)
Q Consensus 85 ~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~------~~~~~~~l~~l~~~~~~~~~~~~ivV 158 (298)
..++++||||.. ++...+...+ ..+|++++|++.+..-+ .....+.+..+... |- +++|++
T Consensus 85 ~~i~lIDtPGh~-------~f~~~~~~g~--~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~-gi---~~iiv~ 151 (446)
T PTZ00141 85 YYFTIIDAPGHR-------DFIKNMITGT--SQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL-GV---KQMIVC 151 (446)
T ss_pred eEEEEEECCChH-------HHHHHHHHhh--hhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc-CC---CeEEEE
Confidence 999999999964 2333333222 58999999966653211 12334444443333 32 468899
Q ss_pred EeCcCC
Q 022358 159 LTHAQL 164 (298)
Q Consensus 159 ~tk~D~ 164 (298)
+||+|.
T Consensus 152 vNKmD~ 157 (446)
T PTZ00141 152 INKMDD 157 (446)
T ss_pred EEcccc
Confidence 999995
No 261
>PTZ00416 elongation factor 2; Provisional
Probab=99.04 E-value=2.8e-09 Score=108.45 Aligned_cols=115 Identities=16% Similarity=0.180 Sum_probs=73.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC---------------cceeEEEEEEEEC----------CeEEEEE
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS---------------EALRPVMVSRSKG----------GFTLNII 90 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~---------------~t~~~~~~~~~~~----------g~~l~vi 90 (298)
+-.+|+++|..++|||||+++|+...........+ .|.........+. +..+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 44699999999999999999999753211111111 1111111223333 5679999
Q ss_pred eCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 91 DTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 91 DTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
||||..+. ...+...+ ..+|++++|++... .+...+..+++.+.+.. .|+++++||+|..
T Consensus 98 DtPG~~~f-------~~~~~~al--~~~D~ailVvda~~-g~~~~t~~~~~~~~~~~-----~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDF-------SSEVTAAL--RVTDGALVVVDCVE-GVCVQTETVLRQALQER-----IRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhH-------HHHHHHHH--hcCCeEEEEEECCC-CcCccHHHHHHHHHHcC-----CCEEEEEEChhhh
Confidence 99999652 22222222 58999999966553 35555666666655442 7999999999984
No 262
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.02 E-value=1.3e-10 Score=94.48 Aligned_cols=73 Identities=29% Similarity=0.353 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccC-------CCCcceeEEEEEEEECCeEEEEEeCC
Q 022358 21 NKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS-------FQSEALRPVMVSRSKGGFTLNIIDTP 93 (298)
Q Consensus 21 ~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~-------~~~~t~~~~~~~~~~~g~~l~viDTP 93 (298)
+.+.++...++. -+++++|++|||||||+|+|++.....++. ..++|+....+..+. ...|||||
T Consensus 24 ~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~---g~~iIDTP 95 (161)
T PF03193_consen 24 EGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD---GGYIIDTP 95 (161)
T ss_dssp TTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT---SEEEECSH
T ss_pred cCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC---CcEEEECC
Confidence 444444444443 689999999999999999999985444332 223444444444432 34799999
Q ss_pred CCCCCCcC
Q 022358 94 GLVEAGYV 101 (298)
Q Consensus 94 G~~~~~~~ 101 (298)
|+.+.+..
T Consensus 96 Gf~~~~l~ 103 (161)
T PF03193_consen 96 GFRSFGLW 103 (161)
T ss_dssp HHHT--GC
T ss_pred CCCccccc
Confidence 99876644
No 263
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.02 E-value=1.7e-09 Score=98.12 Aligned_cols=82 Identities=21% Similarity=0.263 Sum_probs=59.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE------------------------CCeEEEEEeCCCC
Q 022358 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK------------------------GGFTLNIIDTPGL 95 (298)
Q Consensus 40 IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~------------------------~g~~l~viDTPG~ 95 (298)
|+++|.+|+|||||+|+|++... .+++++.+|..+......+ .+.++.++||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 57999999999999999999875 6788888887666533221 2357999999999
Q ss_pred CCCCcCc----HHHHHHHHhhhhcCCCCEEEEEEeCC
Q 022358 96 VEAGYVN----YQALELIKGFLLNKTIDVLLYADRLD 128 (298)
Q Consensus 96 ~~~~~~~----~~~~~~i~~~~~~~~~d~vl~v~~~d 128 (298)
....... ..++..+ ..+|++++|++..
T Consensus 80 v~ga~~~~glg~~fL~~i------r~aD~ii~Vvd~~ 110 (318)
T cd01899 80 VPGAHEGKGLGNKFLDDL------RDADALIHVVDAS 110 (318)
T ss_pred CCCccchhhHHHHHHHHH------HHCCEEEEEEeCC
Confidence 6543222 2333334 4899999998875
No 264
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.02 E-value=7.8e-10 Score=91.68 Aligned_cols=58 Identities=26% Similarity=0.410 Sum_probs=47.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLV 96 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~ 96 (298)
..++++++|.+|+||||++|+|++.....++..+++|.....+... ..+.++||||+.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~~ 171 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGIL 171 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCCC
Confidence 4579999999999999999999998766677777777766655543 468999999973
No 265
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.02 E-value=1.8e-09 Score=100.76 Aligned_cols=84 Identities=24% Similarity=0.303 Sum_probs=61.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEE------------------------ECCeEEEEEeCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS------------------------KGGFTLNIIDTP 93 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~------------------------~~g~~l~viDTP 93 (298)
++|+++|.+|+|||||+|+|++... .+++++++|..+...... ....++.++|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc-cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 6899999999999999999999875 567788888766654322 122468899999
Q ss_pred CCCCCCcCc----HHHHHHHHhhhhcCCCCEEEEEEeCC
Q 022358 94 GLVEAGYVN----YQALELIKGFLLNKTIDVLLYADRLD 128 (298)
Q Consensus 94 G~~~~~~~~----~~~~~~i~~~~~~~~~d~vl~v~~~d 128 (298)
|+....... ..++..+ ..+|++++|++..
T Consensus 81 Gl~~ga~~g~glg~~fL~~i------r~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGAHEGRGLGNQFLDDL------RQADALIHVVDAS 113 (396)
T ss_pred CcCCCccchhhHHHHHHHHH------HHCCEEEEEEeCC
Confidence 997643222 2344444 4899999997774
No 266
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.01 E-value=6.6e-10 Score=89.16 Aligned_cols=56 Identities=32% Similarity=0.459 Sum_probs=44.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLV 96 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~ 96 (298)
-+++++|.+|+||||++|+|++.....++..++.|.....+.. ++ .+.++||||+.
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~i~DtpG~~ 139 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL--TP-TITLCDCPGLV 139 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe--CC-CEEEEECCCcC
Confidence 3899999999999999999999987667777776665544333 32 68999999984
No 267
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.01 E-value=1.4e-08 Score=87.89 Aligned_cols=122 Identities=18% Similarity=0.078 Sum_probs=75.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC--CcccccCCCCcceeEEEEEEEE---CCeEEEEEeCCCCCCCCcCc---HHHHH
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE--RVVTVNSFQSEALRPVMVSRSK---GGFTLNIIDTPGLVEAGYVN---YQALE 107 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~--~~~~~~~~~~~t~~~~~~~~~~---~g~~l~viDTPG~~~~~~~~---~~~~~ 107 (298)
+-..|.|+|++++|||+|+|.|+|. .........++|.......... .+..+.++||||+.+..... +..+.
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 4468999999999999999999998 4433344566777655554444 35789999999998765433 11222
Q ss_pred HHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-----------hCCCCCceEEEEEeCcCC
Q 022358 108 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGT-----------FGKQIWRKSLLVLTHAQL 164 (298)
Q Consensus 108 ~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~-----------~~~~~~~~~ivV~tk~D~ 164 (298)
.+.. --.++++|. +.. .....+...+..+.+. ........+++|+--.+.
T Consensus 86 ~l~~----llss~~i~n--~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~ 146 (224)
T cd01851 86 ALAT----LLSSVLIYN--SWE-TILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSL 146 (224)
T ss_pred HHHH----HHhCEEEEe--ccC-cccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcC
Confidence 2211 236888888 443 3445555544444331 112234556666655544
No 268
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.01 E-value=1.6e-08 Score=82.64 Aligned_cols=131 Identities=15% Similarity=0.198 Sum_probs=81.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccC------CCC---cceeEEEEEEEECC-eEEEEEeCCCCCCCCcCcHH
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS------FQS---EALRPVMVSRSKGG-FTLNIIDTPGLVEAGYVNYQ 104 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~------~~~---~t~~~~~~~~~~~g-~~l~viDTPG~~~~~~~~~~ 104 (298)
....+|+|.|+.|+||||++.++.......+.. ... +|...........+ ..+.++||||...
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R------- 80 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQER------- 80 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHH-------
Confidence 456899999999999999999998775322211 111 22222222344444 7899999999843
Q ss_pred HHHHHHhhhhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCCCCChHHHhhhccHHH
Q 022358 105 ALELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDAL 183 (298)
Q Consensus 105 ~~~~i~~~~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l 183 (298)
++.+...++ .++...+++ +|+++ .+..+..+++.+..... .|++|..||.|+.+... .+.+
T Consensus 81 -F~fm~~~l~-~ga~gaivl--VDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a~p----------pe~i 142 (187)
T COG2229 81 -FKFMWEILS-RGAVGAIVL--VDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDALP----------PEKI 142 (187)
T ss_pred -HHHHHHHHh-CCcceEEEE--EecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCCCC----------HHHH
Confidence 333333333 456666666 45444 44455666666665542 79999999999964333 3556
Q ss_pred HHHHHhh
Q 022358 184 LKTIRLG 190 (298)
Q Consensus 184 ~~~i~~~ 190 (298)
++++..+
T Consensus 143 ~e~l~~~ 149 (187)
T COG2229 143 REALKLE 149 (187)
T ss_pred HHHHHhc
Confidence 6666554
No 269
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.99 E-value=1.9e-09 Score=98.20 Aligned_cols=88 Identities=19% Similarity=0.345 Sum_probs=65.5
Q ss_pred ccCCchhhHHHHHHHHHHhhhcC--CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEE
Q 022358 12 FQQFPSATQNKLIELLSKLKQEN--VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNI 89 (298)
Q Consensus 12 ~~~l~~~~~~~l~~~l~~l~~~~--~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~v 89 (298)
..-+..+.+.-..+.++.+...+ ....+++|+|.+|+||||+||+|.|...+.++..|+.|...+...... .+.+
T Consensus 105 ~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~---~i~L 181 (322)
T COG1161 105 GKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD---GIYL 181 (322)
T ss_pred ccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC---CeEE
Confidence 33344333333335566666654 345899999999999999999999999999999999888766665543 4899
Q ss_pred EeCCCCCCCCcCc
Q 022358 90 IDTPGLVEAGYVN 102 (298)
Q Consensus 90 iDTPG~~~~~~~~ 102 (298)
+||||+.-....+
T Consensus 182 lDtPGii~~~~~~ 194 (322)
T COG1161 182 LDTPGIIPPKFDD 194 (322)
T ss_pred ecCCCcCCCCccc
Confidence 9999998766554
No 270
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.99 E-value=1.9e-09 Score=87.90 Aligned_cols=120 Identities=15% Similarity=0.173 Sum_probs=74.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccC-CCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNS-FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~-~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
..|+|+++|.+|+|||||+|.....+...-.. ..+.......+...-.-..+.||||.|...+.. +. ..-
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqs--------Lg-~aF 78 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQS--------LG-VAF 78 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhh--------cc-cce
Confidence 56999999999999999999998775422111 111111122222222223678999999854332 21 111
Q ss_pred cCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhC-C-CCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFG-K-QIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~-~-~~~~~~ivV~tk~D~~ 165 (298)
..++|++++|++++... +... ..+-+++..... . .-.-|+|++.||.|..
T Consensus 79 YRgaDcCvlvydv~~~~Sfe~L-~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~ 131 (210)
T KOG0394|consen 79 YRGADCCVLVYDVNNPKSFENL-ENWRKEFLIQASPQDPETFPFVILGNKIDVD 131 (210)
T ss_pred ecCCceEEEEeecCChhhhccH-HHHHHHHHHhcCCCCCCcccEEEEcccccCC
Confidence 26999999999998644 3322 344444443333 2 2346999999999984
No 271
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.95 E-value=7.1e-09 Score=81.52 Aligned_cols=113 Identities=16% Similarity=0.215 Sum_probs=73.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcc-eeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHH-hhh
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIK-GFL 113 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~-~~~ 113 (298)
++.+++|.+|+|||||.-.+-.... .+++..++ .+-...+.+++| .++.||||.|.. .++.|- .+.
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtF--s~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqE--------rFrtitstyy 78 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTF--SGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQE--------RFRTITSTYY 78 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhccc--ccceEEEeeeeEEEEEeecCCcEEEEEEeecccHH--------HHHHHHHHHc
Confidence 4678999999999999977655432 12221111 111222344444 468999999973 222222 111
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.++|++++|++++...--..-.++++.++..+.. .|-++|.||.|..
T Consensus 79 --rgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds---v~~vLVGNK~d~~ 125 (198)
T KOG0079|consen 79 --RGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS---VPKVLVGNKNDDP 125 (198)
T ss_pred --cCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc---ccceecccCCCCc
Confidence 6999999999988633223346778888877764 7889999999974
No 272
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.95 E-value=1.6e-09 Score=86.09 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=78.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcce----eEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEAL----RPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~----~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
.++|+++|+.-+|||||+=..+...... ..-.|. .......+-...++.||||.|.........-
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~---kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPI-------- 81 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNC---KHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPI-------- 81 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcch---hhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCce--------
Confidence 5899999999999999997777554311 111111 1111122223347899999998543322221
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
...+.+.+|+|+++++...-+.-..++..++.+.|.+ .-+++|.||.|+.
T Consensus 82 -YYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGne--i~l~IVGNKiDLE 131 (218)
T KOG0088|consen 82 -YYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNE--IELLIVGNKIDLE 131 (218)
T ss_pred -EEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCe--eEEEEecCcccHH
Confidence 1257899999999987443344578899999999987 7889999999984
No 273
>PRK12289 GTPase RsgA; Reviewed
Probab=98.94 E-value=9.6e-10 Score=100.95 Aligned_cols=72 Identities=29% Similarity=0.435 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC-------cceeEEEEEEEECCeEEEEEeCC
Q 022358 21 NKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS-------EALRPVMVSRSKGGFTLNIIDTP 93 (298)
Q Consensus 21 ~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~-------~t~~~~~~~~~~~g~~l~viDTP 93 (298)
+++.+++..+.. ..++|+|.+|+|||||||+|++.....++..++ +|+....+....++ .++|||
T Consensus 161 ~GI~eL~~~L~~-----ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTP 232 (352)
T PRK12289 161 IGLEALLEQLRN-----KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTP 232 (352)
T ss_pred CCHHHHhhhhcc-----ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCC
Confidence 345555555443 248999999999999999999887666665554 56655555443333 799999
Q ss_pred CCCCCCc
Q 022358 94 GLVEAGY 100 (298)
Q Consensus 94 G~~~~~~ 100 (298)
|+...+.
T Consensus 233 G~~~~~l 239 (352)
T PRK12289 233 GFNQPDL 239 (352)
T ss_pred Ccccccc
Confidence 9976554
No 274
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=3.3e-08 Score=92.91 Aligned_cols=114 Identities=14% Similarity=0.173 Sum_probs=79.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeE--EEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRP--VMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKG 111 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~--~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~ 111 (298)
..++..|.++|....|||||+.+|-+..++... ..+-|.+. ...+.+ .|..+++.||||. ..+..||.
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E-~GGITQhIGAF~V~~p-~G~~iTFLDTPGH--------aAF~aMRa 219 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGE-AGGITQHIGAFTVTLP-SGKSITFLDTPGH--------AAFSAMRA 219 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhh-cCCccceeceEEEecC-CCCEEEEecCCcH--------HHHHHHHh
Confidence 347889999999999999999999998875432 23334333 334445 7899999999997 45555553
Q ss_pred hhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCC
Q 022358 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (298)
Q Consensus 112 ~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 164 (298)
- -..-.|.+++|+..|+ .+-+... +.|+..... ..|+|+.+||+|.
T Consensus 220 R-GA~vtDIvVLVVAadD-GVmpQT~---EaIkhAk~A--~VpiVvAinKiDk 265 (683)
T KOG1145|consen 220 R-GANVTDIVVLVVAADD-GVMPQTL---EAIKHAKSA--NVPIVVAINKIDK 265 (683)
T ss_pred c-cCccccEEEEEEEccC-CccHhHH---HHHHHHHhc--CCCEEEEEeccCC
Confidence 1 1245699999988876 4544444 444444322 3899999999997
No 275
>PRK12288 GTPase RsgA; Reviewed
Probab=98.92 E-value=1.9e-09 Score=98.86 Aligned_cols=73 Identities=30% Similarity=0.475 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC-------cceeEEEEEEEECCeEEEEEeCC
Q 022358 21 NKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS-------EALRPVMVSRSKGGFTLNIIDTP 93 (298)
Q Consensus 21 ~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~-------~t~~~~~~~~~~~g~~l~viDTP 93 (298)
+++.++...+.. ..++++|.+|||||||||+|++.....++..+. +|+....+....++ .++|||
T Consensus 194 ~GideL~~~L~~-----ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTP 265 (347)
T PRK12288 194 EGLEELEAALTG-----RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSP 265 (347)
T ss_pred cCHHHHHHHHhh-----CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECC
Confidence 345555555543 247999999999999999999987666655432 45444545554343 499999
Q ss_pred CCCCCCcC
Q 022358 94 GLVEAGYV 101 (298)
Q Consensus 94 G~~~~~~~ 101 (298)
|+.+.+..
T Consensus 266 Gir~~~l~ 273 (347)
T PRK12288 266 GVREFGLW 273 (347)
T ss_pred CCCcccCC
Confidence 99876643
No 276
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.92 E-value=2.6e-08 Score=100.36 Aligned_cols=115 Identities=15% Similarity=0.221 Sum_probs=70.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCC---------------CcceeEEEEEEEE----CCeEEEEEeCCCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQ---------------SEALRPVMVSRSK----GGFTLNIIDTPGLV 96 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~---------------~~t~~~~~~~~~~----~g~~l~viDTPG~~ 96 (298)
+-.+|+++|..++|||||+.+|+........... +.|.........+ .+..++++||||..
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 4568999999999999999999854321110000 1111112122222 46789999999997
Q ss_pred CCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 97 EAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 97 ~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+.. .+....+ ..+|++++|++... ........+++...+. + .|.|+++||+|..
T Consensus 99 df~---~~~~~~l------~~~D~avlVvda~~-g~~~~t~~~~~~~~~~-~----~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 DFG---GDVTRAM------RAVDGAIVVVDAVE-GVMPQTETVLRQALRE-R----VKPVLFINKVDRL 152 (731)
T ss_pred ChH---HHHHHHH------HhcCEEEEEEECCC-CCCccHHHHHHHHHHc-C----CCeEEEEECchhh
Confidence 632 2232233 47899999966543 3455555555544333 1 5779999999974
No 277
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.92 E-value=2e-08 Score=102.48 Aligned_cols=121 Identities=17% Similarity=0.244 Sum_probs=74.1
Q ss_pred hhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCC---------------CcceeEEEEEEEE------------
Q 022358 30 LKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQ---------------SEALRPVMVSRSK------------ 82 (298)
Q Consensus 30 l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~---------------~~t~~~~~~~~~~------------ 82 (298)
+.+...+-.+|+++|+.++|||||+++|+........... +.|.........+
T Consensus 12 ~~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~ 91 (843)
T PLN00116 12 IMDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKG 91 (843)
T ss_pred HhhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccc
Confidence 3333445579999999999999999999865421111111 1111211222333
Q ss_pred ----CCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEE
Q 022358 83 ----GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLV 158 (298)
Q Consensus 83 ----~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV 158 (298)
.+..+.++||||..+. ...+...+ ..+|++++|++... .+......+++.+.... .|++++
T Consensus 92 ~~~~~~~~inliDtPGh~dF-------~~e~~~al--~~~D~ailVvda~~-Gv~~~t~~~~~~~~~~~-----~p~i~~ 156 (843)
T PLN00116 92 ERDGNEYLINLIDSPGHVDF-------SSEVTAAL--RITDGALVVVDCIE-GVCVQTETVLRQALGER-----IRPVLT 156 (843)
T ss_pred ccCCCceEEEEECCCCHHHH-------HHHHHHHH--hhcCEEEEEEECCC-CCcccHHHHHHHHHHCC-----CCEEEE
Confidence 2567899999998542 22222222 57899999966543 34444555555544432 799999
Q ss_pred EeCcCCC
Q 022358 159 LTHAQLC 165 (298)
Q Consensus 159 ~tk~D~~ 165 (298)
+||+|..
T Consensus 157 iNK~D~~ 163 (843)
T PLN00116 157 VNKMDRC 163 (843)
T ss_pred EECCccc
Confidence 9999984
No 278
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.91 E-value=5.4e-08 Score=92.50 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=73.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcc--------------c----------cc------CCCCcceeEEEEEEEECC
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVV--------------T----------VN------SFQSEALRPVMVSRSKGG 84 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~--------------~----------~~------~~~~~t~~~~~~~~~~~g 84 (298)
...++|+++|..++|||||+-+|+-.... . .. ...+.|.....+.++..+
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 35799999999999999999888732100 0 00 012234444455667788
Q ss_pred eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCC------HHHHHHHHHHHHHhCCCCCceEEEE
Q 022358 85 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVD------DLDRQIIKAVTGTFGKQIWRKSLLV 158 (298)
Q Consensus 85 ~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~------~~~~~~l~~l~~~~~~~~~~~~ivV 158 (298)
..++++||||.. ++...+...+ ..+|++++|++.+...+. ....+.+.. ....|- .++|++
T Consensus 85 ~~i~liDtPGh~-------df~~~~~~g~--~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~-~~~~gi---~~iIV~ 151 (447)
T PLN00043 85 YYCTVIDAPGHR-------DFIKNMITGT--SQADCAVLIIDSTTGGFEAGISKDGQTREHALL-AFTLGV---KQMICC 151 (447)
T ss_pred EEEEEEECCCHH-------HHHHHHHhhh--hhccEEEEEEEcccCceecccCCCchHHHHHHH-HHHcCC---CcEEEE
Confidence 899999999973 3444443333 589999999776642121 122222222 222232 468999
Q ss_pred EeCcCCC
Q 022358 159 LTHAQLC 165 (298)
Q Consensus 159 ~tk~D~~ 165 (298)
+||+|+.
T Consensus 152 vNKmD~~ 158 (447)
T PLN00043 152 CNKMDAT 158 (447)
T ss_pred EEcccCC
Confidence 9999974
No 279
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=1.4e-08 Score=92.77 Aligned_cols=184 Identities=14% Similarity=0.205 Sum_probs=100.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCc-------------c----c-------------ccCCCCcceeEEEEEEEECC
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERV-------------V----T-------------VNSFQSEALRPVMVSRSKGG 84 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~-------------~----~-------------~~~~~~~t~~~~~~~~~~~g 84 (298)
...++++++|.+.+|||||+-.|+=.-. + . .....+.|.......++.+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 4679999999999999999988862200 0 0 00112334444444566677
Q ss_pred eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCC-----CHHHHHHHHHHHHHhCCCCCceEEEEE
Q 022358 85 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV-----DDLDRQIIKAVTGTFGKQIWRKSLLVL 159 (298)
Q Consensus 85 ~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~-----~~~~~~~l~~l~~~~~~~~~~~~ivV~ 159 (298)
..++|+|+||..|+ ..+.+. ...++|+.++|++.....+ -....+-.-.|....|- .++||++
T Consensus 85 ~~~tIiDaPGHrdF------vknmIt---GasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi---~~lIVav 152 (428)
T COG5256 85 YNFTIIDAPGHRDF------VKNMIT---GASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGI---KQLIVAV 152 (428)
T ss_pred ceEEEeeCCchHHH------HHHhhc---chhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCC---ceEEEEE
Confidence 78999999996321 111221 1258899999966654311 01112223345555564 7999999
Q ss_pred eCcCCCCCCCCChHHHhhhccHHHHHHHHhhcCCCcccccccCchHHhhhcCCccccCCCCcccCCCCCCc--hHHHHHH
Q 022358 160 THAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAW--IPTLVKG 237 (298)
Q Consensus 160 tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~lp~~~~W--~~~L~~~ 237 (298)
||+|..+-++..+++.. ..+..+++.++ +... +...||++-.. +.+-.+.- ....| -+.|++.
T Consensus 153 NKMD~v~wde~rf~ei~----~~v~~l~k~~G-~~~~--~v~FIPiSg~~-------G~Nl~~~s-~~~pWY~GpTLlea 217 (428)
T COG5256 153 NKMDLVSWDEERFEEIV----SEVSKLLKMVG-YNPK--DVPFIPISGFK-------GDNLTKKS-ENMPWYKGPTLLEA 217 (428)
T ss_pred EcccccccCHHHHHHHH----HHHHHHHHHcC-CCcc--CCeEEeccccc-------CCcccccC-cCCcCccCChHHHH
Confidence 99999653333333333 33444555554 3321 12235553222 11111111 23557 5678877
Q ss_pred HHHHHhcC
Q 022358 238 ITDVATNK 245 (298)
Q Consensus 238 ~~~~~~~~ 245 (298)
+-..-+++
T Consensus 218 Ld~~~~p~ 225 (428)
T COG5256 218 LDQLEPPE 225 (428)
T ss_pred HhccCCCC
Confidence 76554444
No 280
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.91 E-value=3.9e-09 Score=97.67 Aligned_cols=104 Identities=26% Similarity=0.348 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCC-----cccccCCCCcceeEEEEEEEECCeEEEEEeCC
Q 022358 19 TQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGER-----VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTP 93 (298)
Q Consensus 19 ~~~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~-----~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTP 93 (298)
....+.+++..+.+.. ...+++++|.+|+|||||+|+|++.. ...++..+++|.....+.. +..+.++|||
T Consensus 137 ~g~gv~eL~~~l~~~~-~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~---~~~~~l~DtP 212 (360)
T TIGR03597 137 KGNGIDELLDKIKKAR-NKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL---DDGHSLYDTP 212 (360)
T ss_pred CCCCHHHHHHHHHHHh-CCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe---CCCCEEEECC
Confidence 3444555555555432 23699999999999999999999863 3466778888876554443 2246899999
Q ss_pred CCCCCCcCcHHH-HHHHHhhhhcCCCCEEEEEEe
Q 022358 94 GLVEAGYVNYQA-LELIKGFLLNKTIDVLLYADR 126 (298)
Q Consensus 94 G~~~~~~~~~~~-~~~i~~~~~~~~~d~vl~v~~ 126 (298)
|+.......... .+.++......++..+.|+++
T Consensus 213 G~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~ 246 (360)
T TIGR03597 213 GIINSHQMAHYLDKKDLKYITPKKEIKPKTYQLN 246 (360)
T ss_pred CCCChhHhhhhcCHHHHhhcCCCCccCceEEEeC
Confidence 998653211111 111222223356677777743
No 281
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=4e-08 Score=77.31 Aligned_cols=118 Identities=16% Similarity=0.176 Sum_probs=70.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccc--ccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVT--VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~--~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
.++|+++|.+.+||||++-+..+..... ++.+ +...............++.+|||.|... ++.+-. ..
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTv-GidFKvKTvyr~~kRiklQiwDTagqEr--------yrtiTT-ay 90 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV-GIDFKVKTVYRSDKRIKLQIWDTAGQER--------YRTITT-AY 90 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeee-eeeEEEeEeeecccEEEEEEEecccchh--------hhHHHH-HH
Confidence 4699999999999999999998875421 1110 1111111111122345899999999843 222211 01
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+++.+++++++....--..-..+...|....-.+ .++|+|.||||+.+
T Consensus 91 yRgamgfiLmyDitNeeSf~svqdw~tqIktysw~n--aqvilvgnKCDmd~ 140 (193)
T KOG0093|consen 91 YRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDN--AQVILVGNKCDMDS 140 (193)
T ss_pred hhccceEEEEEecCCHHHHHHHHHHHHHheeeeccC--ceEEEEecccCCcc
Confidence 168999999988775221112233444444443223 78999999999843
No 282
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.90 E-value=7.5e-09 Score=84.31 Aligned_cols=59 Identities=24% Similarity=0.312 Sum_probs=44.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~ 95 (298)
.....+++++|.+|+||||++|++.+.....+++..+.|.....+. .+..+.+|||||+
T Consensus 98 ~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~DtpGi 156 (156)
T cd01859 98 DGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVK---ITSKIYLLDTPGV 156 (156)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEE---cCCCEEEEECcCC
Confidence 4457899999999999999999999877656666666554433222 2337899999996
No 283
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.88 E-value=8.1e-08 Score=89.97 Aligned_cols=119 Identities=18% Similarity=0.208 Sum_probs=72.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------CCCcccccCCCC-----------cce-eEEEEE-E---E------------
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVI------GERVVTVNSFQS-----------EAL-RPVMVS-R---S------------ 81 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~------g~~~~~~~~~~~-----------~t~-~~~~~~-~---~------------ 81 (298)
.+-.|+++|.+|+||||++..|. |..+..++.-+. ... ....+. . +
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 35689999999999999999886 544433322100 000 000111 0 0
Q ss_pred -ECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEe
Q 022358 82 -KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT 160 (298)
Q Consensus 82 -~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~t 160 (298)
..+..++||||||... .+.....++........+|.+++| +|+. .........+.+.+.. .+.-+|+|
T Consensus 179 ~~~~~DvViIDTaGr~~---~d~~lm~El~~i~~~~~p~e~lLV--lda~-~Gq~a~~~a~~F~~~~-----~~~g~IlT 247 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHK---QEDSLFEEMLQVAEAIQPDNIIFV--MDGS-IGQAAEAQAKAFKDSV-----DVGSVIIT 247 (429)
T ss_pred HhCCCCEEEEECCCCCc---chHHHHHHHHHHhhhcCCcEEEEE--eccc-cChhHHHHHHHHHhcc-----CCcEEEEE
Confidence 0256899999999743 344556666665544578999999 5542 2333444555555443 46789999
Q ss_pred CcCCC
Q 022358 161 HAQLC 165 (298)
Q Consensus 161 k~D~~ 165 (298)
|.|..
T Consensus 248 KlD~~ 252 (429)
T TIGR01425 248 KLDGH 252 (429)
T ss_pred CccCC
Confidence 99985
No 284
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.88 E-value=3.9e-09 Score=92.57 Aligned_cols=74 Identities=32% Similarity=0.444 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCC-------CCcceeEEEEEEEECCeEEEEE
Q 022358 18 ATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSF-------QSEALRPVMVSRSKGGFTLNII 90 (298)
Q Consensus 18 ~~~~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~-------~~~t~~~~~~~~~~~g~~l~vi 90 (298)
...+.+.++...+.. ..++++|.+|+|||||+|+|++.....++.. .++|+....+.. .+| .++
T Consensus 106 ktg~gi~eLf~~l~~-----~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~---~li 176 (245)
T TIGR00157 106 KNQDGLKELIEALQN-----RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HGG---LIA 176 (245)
T ss_pred CCchhHHHHHhhhcC-----CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CCc---EEE
Confidence 344455566555443 4789999999999999999998865444433 235655555555 233 799
Q ss_pred eCCCCCCCCc
Q 022358 91 DTPGLVEAGY 100 (298)
Q Consensus 91 DTPG~~~~~~ 100 (298)
||||+...+.
T Consensus 177 DtPG~~~~~l 186 (245)
T TIGR00157 177 DTPGFNEFGL 186 (245)
T ss_pred eCCCccccCC
Confidence 9999987553
No 285
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.85 E-value=3.5e-09 Score=88.53 Aligned_cols=116 Identities=19% Similarity=0.235 Sum_probs=80.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC-Ce--EEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-GF--TLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~--~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
..++++|||..++|||+++.+...... ...+..+-.+.......++ |. .+.+|||.|..+-+ .++ .
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~f--p~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYD--------rlR-p 71 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAF--PEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYD--------RLR-P 71 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcC--cccccCeEEccceEEEEecCCCEEEEeeeecCCCcccc--------ccc-c
Confidence 468999999999999998877665432 1222222222233334453 54 57899999986542 122 3
Q ss_pred hhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
++.+..|+||+|+++++.. +...-.+++.+++..... .|+|+|.||.|+.
T Consensus 72 lsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~---vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 72 LSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN---VPIILVGTKADLR 122 (198)
T ss_pred cCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC---CCEEEEeehHHhh
Confidence 3558999999999998643 444456788888888755 8999999999995
No 286
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=3.8e-08 Score=94.60 Aligned_cols=118 Identities=14% Similarity=0.220 Sum_probs=76.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEE--------------------------------------
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV-------------------------------------- 76 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~-------------------------------------- 76 (298)
....+|++.|.+++||||+||+++..++.+.+..+ +|. +.
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh-~Tn-cF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~ 184 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGH-TTN-CFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDK 184 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccc-cce-eeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccc
Confidence 36789999999999999999999977553322111 110 00
Q ss_pred ------EEEEEE-CC------eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHH
Q 022358 77 ------MVSRSK-GG------FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAV 143 (298)
Q Consensus 77 ------~~~~~~-~g------~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l 143 (298)
....-+ ++ ..++++|.||++-+...+. .+-.++ ..+|+++||....+ .++..+.+++...
T Consensus 185 ~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~ts----wid~~c--ldaDVfVlV~NaEn-tlt~sek~Ff~~v 257 (749)
T KOG0448|consen 185 DLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTS----WIDSFC--LDADVFVLVVNAEN-TLTLSEKQFFHKV 257 (749)
T ss_pred ccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhH----HHHHHh--hcCCeEEEEecCcc-HhHHHHHHHHHHh
Confidence 000001 11 1479999999975544333 222222 58999999954443 5888888888776
Q ss_pred HHHhCCCCCceEEEEEeCcCCCC
Q 022358 144 TGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 144 ~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
.+. ..++.|+.||+|...
T Consensus 258 s~~-----KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 258 SEE-----KPNIFILNNKWDASA 275 (749)
T ss_pred hcc-----CCcEEEEechhhhhc
Confidence 655 267788888889853
No 287
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.83 E-value=5.9e-08 Score=89.63 Aligned_cols=177 Identities=15% Similarity=0.146 Sum_probs=102.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccC---------------CCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNS---------------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 102 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~---------------~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~ 102 (298)
-+|+++-....|||||+..|+......-.. ..+-|.-..-....|++..+.|+||||..|++..-
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 479999999999999999999663211110 01223333344567899999999999999988755
Q ss_pred HHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCCCCChHHHhhhccHH
Q 022358 103 YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDA 182 (298)
Q Consensus 103 ~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~ 182 (298)
+.++ .-.|.+|++++.....+ +..+-.++.-.+.. -+-|+|+||.|.. +...++.+. +.
T Consensus 86 ERvl---------~MVDgvlLlVDA~EGpM-PQTrFVlkKAl~~g-----L~PIVVvNKiDrp---~Arp~~Vvd---~v 144 (603)
T COG1217 86 ERVL---------SMVDGVLLLVDASEGPM-PQTRFVLKKALALG-----LKPIVVINKIDRP---DARPDEVVD---EV 144 (603)
T ss_pred hhhh---------hhcceEEEEEEcccCCC-CchhhhHHHHHHcC-----CCcEEEEeCCCCC---CCCHHHHHH---HH
Confidence 5444 35688888844433223 23333443332221 4668899999973 233444442 34
Q ss_pred HHHHHHhhcCCCcccccccCchHHhhhcCCccccCCCCcccCCCCCCchHHHHHHHHHHHhcC
Q 022358 183 LLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNK 245 (298)
Q Consensus 183 l~~~i~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~lp~~~~W~~~L~~~~~~~~~~~ 245 (298)
+.-+++-.+..-..+ .|+..++......+- ......+-+..|++.++++++.-
T Consensus 145 fDLf~~L~A~deQLd-----FPivYAS~~~G~a~~-----~~~~~~~~m~pLfe~I~~hvp~P 197 (603)
T COG1217 145 FDLFVELGATDEQLD-----FPIVYASARNGTASL-----DPEDEADDMAPLFETILDHVPAP 197 (603)
T ss_pred HHHHHHhCCChhhCC-----CcEEEeeccCceecc-----CccccccchhHHHHHHHHhCCCC
Confidence 444444433222221 454433322211111 11222333999999999999864
No 288
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.82 E-value=6.8e-09 Score=91.98 Aligned_cols=59 Identities=29% Similarity=0.467 Sum_probs=43.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccC-------CCCcceeEEEEEEEECCeEEEEEeCCCCCCCCc
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNS-------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY 100 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~-------~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~ 100 (298)
..+++|++|+|||||+|+|.++....++. ..++|+....+.+..+| .|+||||+.+.+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~l 231 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLGL 231 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccCc
Confidence 77889999999999999999874433332 23456666666665566 4999999987654
No 289
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.81 E-value=1.4e-07 Score=89.74 Aligned_cols=118 Identities=14% Similarity=0.178 Sum_probs=69.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccC--CCCccee----------------EEEE-EE---------------
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS--FQSEALR----------------PVMV-SR--------------- 80 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~--~~~~t~~----------------~~~~-~~--------------- 80 (298)
...++|.++|....|||||+.+|+|........ ..+-|.. +..+ ..
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 456999999999999999999999864321110 0000000 0000 00
Q ss_pred -EECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEE
Q 022358 81 -SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL 159 (298)
Q Consensus 81 -~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~ 159 (298)
......+.++||||.. .+.+.+...+ ..+|++++|++.+.........+.+. +.+..+- +++|+|+
T Consensus 112 ~~~~~~~i~~IDtPGH~-------~fi~~m~~g~--~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lgi---~~iIVvl 178 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHD-------ILMATMLNGA--AVMDAALLLIAANESCPQPQTSEHLA-AVEIMKL---KHIIILQ 178 (460)
T ss_pred cccccceEeeeeCCCHH-------HHHHHHHHHH--hhCCEEEEEEECCCCccchhhHHHHH-HHHHcCC---CcEEEEE
Confidence 0012478999999962 3333333222 58899999977664212332233333 3334443 6899999
Q ss_pred eCcCCC
Q 022358 160 THAQLC 165 (298)
Q Consensus 160 tk~D~~ 165 (298)
||+|+.
T Consensus 179 NKiDlv 184 (460)
T PTZ00327 179 NKIDLV 184 (460)
T ss_pred eccccc
Confidence 999985
No 290
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.81 E-value=3.8e-08 Score=85.49 Aligned_cols=120 Identities=21% Similarity=0.252 Sum_probs=75.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccc-ccC-CCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcC---cHHHHHHH
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVT-VNS-FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV---NYQALELI 109 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~-~~~-~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~---~~~~~~~i 109 (298)
.++.+++++|.+++|||||+|.++...... .+. .++.|. ......-|..++++|.||++..++. .++.-+..
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq---~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQ---AINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccce---eeeeeeccceEEEEecCCcccccCCccCcchHhHhH
Confidence 356899999999999999999999775422 121 223232 2233334668999999996643321 12222233
Q ss_pred Hhhhhc--CCCCEEEEEEeCCCC-CCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 110 KGFLLN--KTIDVLLYADRLDAY-RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 110 ~~~~~~--~~~d~vl~v~~~d~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..++.. .-..++|++ |+. .+...|...+.++.+.. .|+.+||||||..
T Consensus 211 ~~Y~leR~nLv~~FLLv---d~sv~i~~~D~~~i~~~ge~~-----VP~t~vfTK~DK~ 261 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLV---DASVPIQPTDNPEIAWLGENN-----VPMTSVFTKCDKQ 261 (320)
T ss_pred HHHHHhhhhhheeeeee---eccCCCCCCChHHHHHHhhcC-----CCeEEeeehhhhh
Confidence 333322 234455555 332 36666777777777664 8999999999974
No 291
>PRK12740 elongation factor G; Reviewed
Probab=98.79 E-value=5.4e-08 Score=97.30 Aligned_cols=108 Identities=13% Similarity=0.178 Sum_probs=69.5
Q ss_pred EcCCCCCHHHHHHHHhCCCcccc--cC---------------CCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHH
Q 022358 43 MGKGGVGKSSTVNSVIGERVVTV--NS---------------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA 105 (298)
Q Consensus 43 vG~~g~GKSSliN~l~g~~~~~~--~~---------------~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~ 105 (298)
+|+.|+|||||+|+|+....... +. ..+.|.........+.+..+++|||||..+.. .+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~---~~~ 77 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFT---GEV 77 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHH---HHH
Confidence 59999999999999965432111 10 01223333445677889999999999985321 122
Q ss_pred HHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 106 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 106 ~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
...+ ..+|++++|++... .........+..+... ..|+++|+||+|..
T Consensus 78 ~~~l------~~aD~vllvvd~~~-~~~~~~~~~~~~~~~~-----~~p~iiv~NK~D~~ 125 (668)
T PRK12740 78 ERAL------RVLDGAVVVVCAVG-GVEPQTETVWRQAEKY-----GVPRIIFVNKMDRA 125 (668)
T ss_pred HHHH------HHhCeEEEEEeCCC-CcCHHHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence 2222 47899999966654 3454455555544433 27999999999985
No 292
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1.9e-07 Score=88.02 Aligned_cols=115 Identities=13% Similarity=0.111 Sum_probs=83.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC---CeEEEEEeCCCCCCCCcCcHHHHHHHHh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG---GFTLNIIDTPGLVEAGYVNYQALELIKG 111 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---g~~l~viDTPG~~~~~~~~~~~~~~i~~ 111 (298)
.++.-|.++|+...|||||+-.|-+..++. +...+-|.+..-|....+ ...++++||||. +.+..+|.
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~-~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH--------eAFt~mRa 73 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH--------EAFTAMRA 73 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCcccc-ccCCceeeEeeeEEEEeccCCCceEEEEcCCcH--------HHHHHHHh
Confidence 367889999999999999999999988743 333445666666666663 468999999998 44444542
Q ss_pred hhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 112 ~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
- -..-+|++++|+.+|. .+.+...+.++.++... .|++|.+||+|..
T Consensus 74 R-Ga~vtDIaILVVa~dD-Gv~pQTiEAI~hak~a~-----vP~iVAiNKiDk~ 120 (509)
T COG0532 74 R-GASVTDIAILVVAADD-GVMPQTIEAINHAKAAG-----VPIVVAINKIDKP 120 (509)
T ss_pred c-CCccccEEEEEEEccC-CcchhHHHHHHHHHHCC-----CCEEEEEecccCC
Confidence 1 1134699999988886 46665666666555553 8999999999985
No 293
>PRK13768 GTPase; Provisional
Probab=98.78 E-value=4.7e-08 Score=86.16 Aligned_cols=80 Identities=18% Similarity=0.142 Sum_probs=44.2
Q ss_pred eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcC
Q 022358 85 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (298)
Q Consensus 85 ~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 163 (298)
..+.++||||..+........ ..+.+.+.....++++++ +|... .+..+......+..........|+++|+||+|
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~-~~~~~~l~~~~~~~ii~l--iD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D 173 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESG-RKLVERLSGSSKSVVVFL--IDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKAD 173 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHH-HHHHHHHHhcCCeEEEEE--echHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHh
Confidence 368999999986643222222 222222222238999999 45423 34445444333321110012389999999999
Q ss_pred CCCC
Q 022358 164 LCPP 167 (298)
Q Consensus 164 ~~~~ 167 (298)
+.+.
T Consensus 174 ~~~~ 177 (253)
T PRK13768 174 LLSE 177 (253)
T ss_pred hcCc
Confidence 8643
No 294
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=2.5e-08 Score=78.89 Aligned_cols=125 Identities=14% Similarity=0.170 Sum_probs=72.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVN-SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~-~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
-++++++|+.|.|||.|+..+........+ ...+...............++.||||.|..... ...+.+-
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFR-------SVtRsYY-- 79 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFR-------SVTRSYY-- 79 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHH-------HHHHHHh--
Confidence 379999999999999999888765432111 111111111112222233478999999984322 2222222
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCCCCCh
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNY 172 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~ 172 (298)
.++-..|+|+++++...-..-..++..++.+-..+ .-++++.||.|+.+..+.++
T Consensus 80 RGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~n--IvviL~GnKkDL~~~R~Vtf 134 (214)
T KOG0086|consen 80 RGAAGALLVYDITSRDSFNALTNWLTDARTLASPN--IVVILCGNKKDLDPEREVTF 134 (214)
T ss_pred ccccceEEEEeccchhhHHHHHHHHHHHHhhCCCc--EEEEEeCChhhcChhhhhhH
Confidence 57778888888876332223345666666555443 55677889999865444433
No 295
>PRK13796 GTPase YqeH; Provisional
Probab=98.77 E-value=1.8e-08 Score=93.37 Aligned_cols=73 Identities=27% Similarity=0.459 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCC-----cccccCCCCcceeEEEEEEEECCeEEEEEeCCCC
Q 022358 21 NKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGER-----VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95 (298)
Q Consensus 21 ~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~-----~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~ 95 (298)
..+.+++..+.+.. ...+++++|.+|||||||||+|++.. ...++..+++|.....+.... ...++||||+
T Consensus 145 ~gI~eL~~~I~~~~-~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~---~~~l~DTPGi 220 (365)
T PRK13796 145 HGIDELLEAIEKYR-EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD---GSFLYDTPGI 220 (365)
T ss_pred CCHHHHHHHHHHhc-CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC---CcEEEECCCc
Confidence 34555555554322 34689999999999999999999642 334678888888766554432 2479999999
Q ss_pred CC
Q 022358 96 VE 97 (298)
Q Consensus 96 ~~ 97 (298)
..
T Consensus 221 ~~ 222 (365)
T PRK13796 221 IH 222 (365)
T ss_pred cc
Confidence 64
No 296
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.75 E-value=2.7e-08 Score=76.28 Aligned_cols=100 Identities=21% Similarity=0.218 Sum_probs=63.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 117 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~ 117 (298)
.||+++|.+|+|||||.|+|.|..... +.++ -.+++.. -.+||||-+- .+...+..+.- ....
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~ly--------kKTQ--Ave~~d~--~~IDTPGEy~---~~~~~Y~aL~t--t~~d 64 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLY--------KKTQ--AVEFNDK--GDIDTPGEYF---EHPRWYHALIT--TLQD 64 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhh--------cccc--eeeccCc--cccCCchhhh---hhhHHHHHHHH--Hhhc
Confidence 379999999999999999999987521 1111 1222221 2599999752 22333333322 2368
Q ss_pred CCEEEEEEeCCCC--CCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 118 IDVLLYADRLDAY--RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 118 ~d~vl~v~~~d~~--~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+|++++|...+.. ++++ .+...+ -+++|-|+||+|+.
T Consensus 65 advi~~v~~and~~s~f~p-------~f~~~~----~k~vIgvVTK~DLa 103 (148)
T COG4917 65 ADVIIYVHAANDPESRFPP-------GFLDIG----VKKVIGVVTKADLA 103 (148)
T ss_pred cceeeeeecccCccccCCc-------cccccc----ccceEEEEeccccc
Confidence 9999999777652 2332 222332 26799999999995
No 297
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.75 E-value=2.3e-07 Score=73.59 Aligned_cols=125 Identities=12% Similarity=0.106 Sum_probs=75.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE---CCeEEEEEeCCCCCCCCcCcHHHHHHHHh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK---GGFTLNIIDTPGLVEAGYVNYQALELIKG 111 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~---~g~~l~viDTPG~~~~~~~~~~~~~~i~~ 111 (298)
++-.+++|+|.-++|||+++..++-.......+...+..+......+. ....+.++||.|+.+.. .+.-+.+
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~---~eLprhy-- 81 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQ---QELPRHY-- 81 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCch---hhhhHhH--
Confidence 356899999999999999997776443323233333322333333322 23478999999997652 1222222
Q ss_pred hhhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCCC
Q 022358 112 FLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 169 (298)
Q Consensus 112 ~~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~ 169 (298)
+ .-+|++++|++.++.. |. -.+.++.=.+.+.+....|++++.|++|..++..
T Consensus 82 -~--q~aDafVLVYs~~d~eSf~--rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~ 135 (198)
T KOG3883|consen 82 -F--QFADAFVLVYSPMDPESFQ--RVELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE 135 (198)
T ss_pred -h--ccCceEEEEecCCCHHHHH--HHHHHHHHHhhccccccccEEEEechhhcccchh
Confidence 2 5689999998776532 22 1233333223344444589999999999864444
No 298
>PRK00098 GTPase RsgA; Reviewed
Probab=98.73 E-value=3.2e-08 Score=89.30 Aligned_cols=72 Identities=25% Similarity=0.338 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCC-------CcceeEEEEEEEECCeEEEEEeC
Q 022358 20 QNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQ-------SEALRPVMVSRSKGGFTLNIIDT 92 (298)
Q Consensus 20 ~~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~-------~~t~~~~~~~~~~~g~~l~viDT 92 (298)
.+.+.++...+. ...++++|.+|+|||||+|+|+|.....++... .+|+....+..... ..++||
T Consensus 152 g~gi~~L~~~l~-----gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~Dt 223 (298)
T PRK00098 152 GEGLDELKPLLA-----GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDT 223 (298)
T ss_pred CccHHHHHhhcc-----CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEEC
Confidence 344555554443 247899999999999999999998654444333 24444444333322 379999
Q ss_pred CCCCCCC
Q 022358 93 PGLVEAG 99 (298)
Q Consensus 93 PG~~~~~ 99 (298)
||+.+.+
T Consensus 224 pG~~~~~ 230 (298)
T PRK00098 224 PGFSSFG 230 (298)
T ss_pred CCcCccC
Confidence 9997644
No 299
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=1.9e-07 Score=84.13 Aligned_cols=119 Identities=18% Similarity=0.285 Sum_probs=72.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcc--cccCCCCcceeEEEEEEE-----------------ECC-------------
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVV--TVNSFQSEALRPVMVSRS-----------------KGG------------- 84 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~--~~~~~~~~t~~~~~~~~~-----------------~~g------------- 84 (298)
..-|+++|+.+.||||+||-|+..+.. .+++.|++..-....... +.|
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 457999999999999999999988652 222222221111111100 000
Q ss_pred ---------eEEEEEeCCCCCCCCcCc-------HHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhC
Q 022358 85 ---------FTLNIIDTPGLVEAGYVN-------YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFG 148 (298)
Q Consensus 85 ---------~~l~viDTPG~~~~~~~~-------~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~ 148 (298)
..++||||||+.+..... ..+.+.+. .++|.|+++++..--.++++-.+++..++ |
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFa-----eR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G 209 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFA-----ERVDRIILLFDAHKLDISDEFKRVIDALK---G 209 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHH-----HhccEEEEEechhhccccHHHHHHHHHhh---C
Confidence 137999999998754321 11222222 68999999954433335655555555444 5
Q ss_pred CCCCceEEEEEeCcCCC
Q 022358 149 KQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 149 ~~~~~~~ivV~tk~D~~ 165 (298)
.+ ..+-||+||+|..
T Consensus 210 ~E--dkiRVVLNKADqV 224 (532)
T KOG1954|consen 210 HE--DKIRVVLNKADQV 224 (532)
T ss_pred Cc--ceeEEEecccccc
Confidence 44 7888999999975
No 300
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.70 E-value=4.4e-08 Score=87.94 Aligned_cols=59 Identities=29% Similarity=0.514 Sum_probs=40.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCC-------CcceeEEEEEEEECCeEEEEEeCCCCCCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQ-------SEALRPVMVSRSKGGFTLNIIDTPGLVEAG 99 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~-------~~t~~~~~~~~~~~g~~l~viDTPG~~~~~ 99 (298)
..++++|++|+|||||+|+|+|.....++... ++|.....+.....+ .++||||+.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCccC
Confidence 57999999999999999999998654443221 234444444433233 699999996643
No 301
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.67 E-value=1.8e-07 Score=82.35 Aligned_cols=48 Identities=23% Similarity=0.198 Sum_probs=41.3
Q ss_pred cccCCchhhHHHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHh
Q 022358 11 GFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 11 ~~~~l~~~~~~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~ 58 (298)
-+++-.++.+....+++..+.....+..+|.+.|.+|+|||||+..|.
T Consensus 25 lvEs~~~~h~~~a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~ 72 (323)
T COG1703 25 LVESRRPDHRALARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALG 72 (323)
T ss_pred HHhcCCchhhhHHHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHH
Confidence 456666666666788999999989999999999999999999999885
No 302
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.67 E-value=5.8e-08 Score=76.42 Aligned_cols=114 Identities=14% Similarity=0.163 Sum_probs=73.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
.++.+.++|-.++||||++|.+....... ....|..-..+....+...+.+||.||...+. ...+ ++.
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~e---dmiptvGfnmrk~tkgnvtiklwD~gGq~rfr----smWe---ryc-- 86 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR----SMWE---RYC-- 86 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchh---hhcccccceeEEeccCceEEEEEecCCCccHH----HHHH---HHh--
Confidence 57899999999999999999988654311 22234444455666677799999999985332 1111 222
Q ss_pred CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCC--CCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQ--IWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~--~~~~~ivV~tk~D~~ 165 (298)
.+.++++||++..... .+.. -+++..++.+. ...|++|+.||.|..
T Consensus 87 R~v~aivY~VDaad~~k~~~s----r~EL~~LL~k~~l~gip~LVLGnK~d~~ 135 (186)
T KOG0075|consen 87 RGVSAIVYVVDAADPDKLEAS----RSELHDLLDKPSLTGIPLLVLGNKIDLP 135 (186)
T ss_pred hcCcEEEEEeecCCcccchhh----HHHHHHHhcchhhcCCcEEEecccccCc
Confidence 6899999995443322 2222 22333333332 237999999999984
No 303
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.67 E-value=8.5e-08 Score=84.98 Aligned_cols=129 Identities=16% Similarity=0.164 Sum_probs=81.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEE-ECCeEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS-KGGFTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~-~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
+.+...|.|+|.||+|||||||+|++..... .+.-..|.+++..... -.|..+.+.||-||.. ...-.....++.-
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p-~drLFATLDpT~h~a~Lpsg~~vlltDTvGFis--dLP~~LvaAF~AT 251 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYP-NDRLFATLDPTLHSAHLPSGNFVLLTDTVGFIS--DLPIQLVAAFQAT 251 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCc-cchhheeccchhhhccCCCCcEEEEeechhhhh--hCcHHHHHHHHHH
Confidence 3456799999999999999999999765422 2222334444444333 2577899999999974 2232333333222
Q ss_pred hh-cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCC--CCCceEEEEEeCcCCC
Q 022358 113 LL-NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~-~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~ 165 (298)
+. -..+|++|.|.+++...........+..+.++.-. ....+++=|-||.|..
T Consensus 252 LeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e 307 (410)
T KOG0410|consen 252 LEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYE 307 (410)
T ss_pred HHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccc
Confidence 21 15889999997666433433444566677666432 2235677788888873
No 304
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=1.5e-07 Score=85.50 Aligned_cols=85 Identities=20% Similarity=0.287 Sum_probs=66.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE------------------CCeEEEEEeCCCCCCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK------------------GGFTLNIIDTPGLVEA 98 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~------------------~g~~l~viDTPG~~~~ 98 (298)
.+++.+||.+|+|||||+|+++... +...++|.||..+......+ -...+.++|.+|+-.+
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 4789999999999999999999988 57889999998876543321 1225789999999864
Q ss_pred C----cCcHHHHHHHHhhhhcCCCCEEEEEEeCC
Q 022358 99 G----YVNYQALELIKGFLLNKTIDVLLYADRLD 128 (298)
Q Consensus 99 ~----~~~~~~~~~i~~~~~~~~~d~vl~v~~~d 128 (298)
. ....+.+..+| .+|+++.|++..
T Consensus 81 As~GeGLGNkFL~~IR------evdaI~hVVr~f 108 (372)
T COG0012 81 ASKGEGLGNKFLDNIR------EVDAIIHVVRCF 108 (372)
T ss_pred cccCCCcchHHHHhhh------hcCeEEEEEEec
Confidence 3 44567777775 789999996654
No 305
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.60 E-value=7.9e-08 Score=89.82 Aligned_cols=63 Identities=30% Similarity=0.432 Sum_probs=54.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCc
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 102 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~ 102 (298)
.++|.+||.+||||||+||+|.|.+...|+..|+-|++-+.+..+- .+.+.|+||+--+++..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~---~v~LCDCPGLVfPSf~~ 376 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP---SVCLCDCPGLVFPSFSP 376 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC---CceecCCCCccccCCCc
Confidence 5899999999999999999999999888999999888776665543 67899999998776655
No 306
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.60 E-value=1.3e-07 Score=75.72 Aligned_cols=128 Identities=13% Similarity=0.083 Sum_probs=76.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCC-CcceeEEEEEE-EECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQ-SEALRPVMVSR-SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~-~~t~~~~~~~~-~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
.++++|+|.+-+|||||+...+..+.+..++.. +.......... .....++.+|||.|..........+.
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyy-------- 79 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYY-------- 79 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHh--------
Confidence 579999999999999999999988776554311 11110111111 12234789999999854433222221
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCCCCChH
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYD 173 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~ 173 (298)
...-.+++|++++...--+.-..+++...-..+.....-+.+|.+|+|+......+.+
T Consensus 80 -rnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~E 137 (213)
T KOG0091|consen 80 -RNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAE 137 (213)
T ss_pred -hcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHH
Confidence 3455678888887643333334566555555442323446688899999655554443
No 307
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.56 E-value=1.7e-07 Score=80.36 Aligned_cols=105 Identities=20% Similarity=0.353 Sum_probs=74.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhh-hc
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL-LN 115 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~-~~ 115 (298)
..|++++|-+++|||||+..|++..- ....+..+|.++.....+++|-++.+.|.||+.++.....-. -++.+ ..
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~S-eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGR---GRQviavA 137 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHS-EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGR---GRQVIAVA 137 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchh-hhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCC---CceEEEEe
Confidence 56999999999999999999997653 344566788888888899999999999999999865433210 01111 22
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhC
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFG 148 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~ 148 (298)
..+|+||+| +|++. ++..+..++.=.+..|
T Consensus 138 rtaDlilMv--LDatk-~e~qr~~le~ELe~vG 167 (364)
T KOG1486|consen 138 RTADLILMV--LDATK-SEDQREILEKELEAVG 167 (364)
T ss_pred ecccEEEEE--ecCCc-chhHHHHHHHHHHHhc
Confidence 578999999 66633 4445556654444444
No 308
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.55 E-value=2.8e-07 Score=84.67 Aligned_cols=85 Identities=20% Similarity=0.160 Sum_probs=65.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC-----------------eEEEEEeCCCCCCCC-
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-----------------FTLNIIDTPGLVEAG- 99 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~l~viDTPG~~~~~- 99 (298)
+++.++|.+++|||||+|+|++.....++.++.+|..+......+.+ ..+.++|.||+....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 78999999999999999999999865677788888777665544433 358999999998643
Q ss_pred ---cCcHHHHHHHHhhhhcCCCCEEEEEEeCC
Q 022358 100 ---YVNYQALELIKGFLLNKTIDVLLYADRLD 128 (298)
Q Consensus 100 ---~~~~~~~~~i~~~~~~~~~d~vl~v~~~d 128 (298)
......+..++ .+|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir------~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIR------EVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHH------hCCEEEEEEeCC
Confidence 23345666664 789999997763
No 309
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.54 E-value=1.2e-06 Score=68.68 Aligned_cols=127 Identities=17% Similarity=0.175 Sum_probs=79.5
Q ss_pred HHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC-eEEEEEeCCCCCCCCcC
Q 022358 23 LIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEAGYV 101 (298)
Q Consensus 23 l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~l~viDTPG~~~~~~~ 101 (298)
+..++...+....++++|+++|-.++||||++..|-++++....+..+- .....++.| +.++|||.-|...-
T Consensus 3 l~til~~~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GF----n~k~v~~~g~f~LnvwDiGGqr~I--- 75 (185)
T KOG0074|consen 3 LETILCCCKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGF----NTKKVEYDGTFHLNVWDIGGQRGI--- 75 (185)
T ss_pred HHHHHHHhcCCCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCc----ceEEEeecCcEEEEEEecCCcccc---
Confidence 4556777777778899999999999999999999999986544332221 223445555 79999999997321
Q ss_pred cHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCC--CCceEEEEEeCcCCC
Q 022358 102 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQ--IWRKSLLVLTHAQLC 165 (298)
Q Consensus 102 ~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~tk~D~~ 165 (298)
..-....+ ...|.++||++..+..+.+ ++-+.+.++.... ...|+.+-.||-|+.
T Consensus 76 RpyWsNYy------envd~lIyVIDS~D~krfe---E~~~el~ELleeeKl~~vpvlIfankQdll 132 (185)
T KOG0074|consen 76 RPYWSNYY------ENVDGLIYVIDSTDEKRFE---EISEELVELLEEEKLAEVPVLIFANKQDLL 132 (185)
T ss_pred chhhhhhh------hccceEEEEEeCCchHhHH---HHHHHHHHHhhhhhhhccceeehhhhhHHH
Confidence 11111111 5889999996543322222 2222233332211 236777777777764
No 310
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.53 E-value=3.2e-07 Score=84.55 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=68.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC------CcccccC--CCC-c-----c----eeEEEEEE--------------EEC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE------RVVTVNS--FQS-E-----A----LRPVMVSR--------------SKG 83 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~------~~~~~~~--~~~-~-----t----~~~~~~~~--------------~~~ 83 (298)
.+-.|+++|++|+||||++..|.+. .+..+.. +.. . + ........ ...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 3468999999999999999988632 1211111 000 0 0 00000000 012
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcC
Q 022358 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (298)
Q Consensus 84 g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 163 (298)
+..+++|||||... .+...+.++.+.+....+|.+++| ++++.-...-.++++.+... ...=+++||.|
T Consensus 320 ~~DvVLIDTaGRs~---kd~~lm~EL~~~lk~~~PdevlLV--LsATtk~~d~~~i~~~F~~~------~idglI~TKLD 388 (436)
T PRK11889 320 RVDYILIDTAGKNY---RASETVEEMIETMGQVEPDYICLT--LSASMKSKDMIEIITNFKDI------HIDGIVFTKFD 388 (436)
T ss_pred CCCEEEEeCccccC---cCHHHHHHHHHHHhhcCCCeEEEE--ECCccChHHHHHHHHHhcCC------CCCEEEEEccc
Confidence 45899999999843 334555566666555677888888 55422222223444444331 45669999999
Q ss_pred CCC
Q 022358 164 LCP 166 (298)
Q Consensus 164 ~~~ 166 (298)
...
T Consensus 389 ET~ 391 (436)
T PRK11889 389 ETA 391 (436)
T ss_pred CCC
Confidence 863
No 311
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.53 E-value=2.1e-07 Score=78.77 Aligned_cols=71 Identities=24% Similarity=0.189 Sum_probs=45.1
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcC
Q 022358 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (298)
Q Consensus 84 g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 163 (298)
+..+++|||||.. ..+.+..++++++.....++-+++|.+.+. ...+........+.+ ...=+++||.|
T Consensus 83 ~~D~vlIDT~Gr~---~~d~~~~~el~~~~~~~~~~~~~LVlsa~~---~~~~~~~~~~~~~~~-----~~~~lIlTKlD 151 (196)
T PF00448_consen 83 GYDLVLIDTAGRS---PRDEELLEELKKLLEALNPDEVHLVLSATM---GQEDLEQALAFYEAF-----GIDGLILTKLD 151 (196)
T ss_dssp TSSEEEEEE-SSS---STHHHHHHHHHHHHHHHSSSEEEEEEEGGG---GGHHHHHHHHHHHHS-----STCEEEEESTT
T ss_pred CCCEEEEecCCcc---hhhHHHHHHHHHHhhhcCCccceEEEeccc---ChHHHHHHHHHhhcc-----cCceEEEEeec
Confidence 4579999999984 344455666666554457888888855443 344444555555554 23457899999
Q ss_pred CC
Q 022358 164 LC 165 (298)
Q Consensus 164 ~~ 165 (298)
..
T Consensus 152 et 153 (196)
T PF00448_consen 152 ET 153 (196)
T ss_dssp SS
T ss_pred CC
Confidence 85
No 312
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.52 E-value=1.2e-06 Score=76.23 Aligned_cols=120 Identities=23% Similarity=0.343 Sum_probs=67.8
Q ss_pred HHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhC------CCcccc-----cCCCCcc------------eeEEEE
Q 022358 22 KLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIG------ERVVTV-----NSFQSEA------------LRPVMV 78 (298)
Q Consensus 22 ~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g------~~~~~~-----~~~~~~t------------~~~~~~ 78 (298)
...++++.+.+...+..+|.+.|++|+|||||+++|.. .+++.. +++.+.. ..+..|
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vf 93 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVF 93 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEE
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEE
Confidence 44567777777777889999999999999999999863 333221 1111110 011122
Q ss_pred EE----------------------EECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCC-CCHH
Q 022358 79 SR----------------------SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR-VDDL 135 (298)
Q Consensus 79 ~~----------------------~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~-~~~~ 135 (298)
.. +..|+.++++.|.|.+.+. + .+. .-+|.+++|....... +...
T Consensus 94 IRS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE-----~--~I~-----~~aD~~v~v~~Pg~GD~iQ~~ 161 (266)
T PF03308_consen 94 IRSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSE-----V--DIA-----DMADTVVLVLVPGLGDEIQAI 161 (266)
T ss_dssp EEEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHH-----H--HHH-----TTSSEEEEEEESSTCCCCCTB
T ss_pred EeecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccH-----H--HHH-----HhcCeEEEEecCCCccHHHHH
Confidence 21 1357789999999996431 1 222 5789999997776533 2222
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEEeCcCC
Q 022358 136 DRQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (298)
Q Consensus 136 ~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 164 (298)
-.-++ +. .=++|+||+|.
T Consensus 162 KaGim----Ei-------aDi~vVNKaD~ 179 (266)
T PF03308_consen 162 KAGIM----EI-------ADIFVVNKADR 179 (266)
T ss_dssp -TTHH----HH--------SEEEEE--SH
T ss_pred hhhhh----hh-------ccEEEEeCCCh
Confidence 22222 32 22799999995
No 313
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=4.9e-07 Score=70.65 Aligned_cols=124 Identities=15% Similarity=0.184 Sum_probs=74.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC---cceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS---EALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~---~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
++-+++|.-|+|||.|+..++.... ....|. ...............++.+|||.|........ +.+-
T Consensus 12 fkyiiigdmgvgkscllhqftekkf--madcphtigvefgtriievsgqkiklqiwdtagqerfravt-------rsyy- 81 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT-------RSYY- 81 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHH--hhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHH-------HHHh-
Confidence 6788999999999999988876643 122222 11222233444455688999999984332211 2111
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCCCCChHH
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDV 174 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~ 174 (298)
.++-..|+|+++.....-..-..++...+.+-.. ..-++++.||+|+....+..+++
T Consensus 82 -rgaagalmvyditrrstynhlsswl~dar~ltnp--nt~i~lignkadle~qrdv~yee 138 (215)
T KOG0097|consen 82 -RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIFLIGNKADLESQRDVTYEE 138 (215)
T ss_pred -ccccceeEEEEehhhhhhhhHHHHHhhhhccCCC--ceEEEEecchhhhhhcccCcHHH
Confidence 5777888888887522111222333333333222 25577889999997777766654
No 314
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=1.2e-06 Score=73.39 Aligned_cols=119 Identities=15% Similarity=0.224 Sum_probs=71.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhh-h
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL-L 114 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~-~ 114 (298)
.+-.|+++|.+++|||+|+-.|....... . -++..+.......+...+++||.||.. .....+..++ .
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~--T--vtSiepn~a~~r~gs~~~~LVD~PGH~-------rlR~kl~e~~~~ 105 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHRG--T--VTSIEPNEATYRLGSENVTLVDLPGHS-------RLRRKLLEYLKH 105 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCccC--e--eeeeccceeeEeecCcceEEEeCCCcH-------HHHHHHHHHccc
Confidence 34789999999999999987777553211 1 112233334444455568999999973 2222222222 2
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHH----HHHHHhCCCCCceEEEEEeCcCCCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIK----AVTGTFGKQIWRKSLLVLTHAQLCPP 167 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~----~l~~~~~~~~~~~~ivV~tk~D~~~~ 167 (298)
...+-+|+|| +|+..+...-+..-+ .+....+..-..|+++.-||.|+...
T Consensus 106 ~~~akaiVFV--VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 106 NYSAKAIVFV--VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred cccceeEEEE--EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 2467788888 665455544444333 33333222334799999999999643
No 315
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.48 E-value=2.4e-06 Score=90.21 Aligned_cols=144 Identities=19% Similarity=0.204 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHhhhcCC---Cc----cEEEEEcCCCCCHHHHHHHHhCCCcccccCC-CCc--ceeEEEEEEEECCeEEE
Q 022358 19 TQNKLIELLSKLKQENV---NT----LTILVMGKGGVGKSSTVNSVIGERVVTVNSF-QSE--ALRPVMVSRSKGGFTLN 88 (298)
Q Consensus 19 ~~~~l~~~l~~l~~~~~---~~----l~IllvG~~g~GKSSliN~l~g~~~~~~~~~-~~~--t~~~~~~~~~~~g~~l~ 88 (298)
.++++.+.+..++.... +. .=.+|+|++|+||||+++.- |....-.... ... +...+.....+-..+.+
T Consensus 86 l~~~~~~a~~~Lk~~~~~~~~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~av 164 (1169)
T TIGR03348 86 LRARFNEALALLKRSRLGGRRYLYDLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAV 164 (1169)
T ss_pred HHHHHHHHHHHHhhccccCchhhhcCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEE
Confidence 45566666666664321 11 24689999999999999775 5443111100 000 00111111222334678
Q ss_pred EEeCCCCCCCCc----CcH----HHHHHHHhhhhcCCCCEEEEEEeCCCCC-CCHHH--------HHHHHHHHHHhCCCC
Q 022358 89 IIDTPGLVEAGY----VNY----QALELIKGFLLNKTIDVLLYADRLDAYR-VDDLD--------RQIIKAVTGTFGKQI 151 (298)
Q Consensus 89 viDTPG~~~~~~----~~~----~~~~~i~~~~~~~~~d~vl~v~~~d~~~-~~~~~--------~~~l~~l~~~~~~~~ 151 (298)
++||+|.+-... .+. ..++.++++.....++.||++++++.-- .++.+ +.-+..+.+.+|-.
T Consensus 165 liDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~- 243 (1169)
T TIGR03348 165 LIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR- 243 (1169)
T ss_pred EEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC-
Confidence 999999775432 121 2344445555557899999997776311 22322 22345566666654
Q ss_pred CceEEEEEeCcCCC
Q 022358 152 WRKSLLVLTHAQLC 165 (298)
Q Consensus 152 ~~~~ivV~tk~D~~ 165 (298)
.|+.+|+||||+.
T Consensus 244 -~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 244 -FPVYLVLTKADLL 256 (1169)
T ss_pred -CCEEEEEecchhh
Confidence 8999999999975
No 316
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=8.8e-07 Score=72.59 Aligned_cols=115 Identities=12% Similarity=0.176 Sum_probs=73.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
+..+.+|+++|--|+||||++..+--.+...+ ..|.....-..++.+.++.+||.-|...-... .+.+.
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt----vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~l-------W~~Y~ 82 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT----VPTIGFNVETVEYKNISFTVWDVGGQEKLRPL-------WKHYF 82 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC----CCccccceeEEEEcceEEEEEecCCCcccccc-------hhhhc
Confidence 44679999999999999999988876654333 22333444556677899999999998432211 11111
Q ss_pred hcCCCCEEEEEEeCCC-CCCCHHHHHHHHHHHHHhCCC--CCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDA-YRVDDLDRQIIKAVTGTFGKQ--IWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~-~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~tk~D~~ 165 (298)
...+.++||++-.+ .|+.+ .-+.+...+... ...|+++..||.|+.
T Consensus 83 --~~t~~lIfVvDS~Dr~Ri~e----ak~eL~~~l~~~~l~~~~llv~aNKqD~~ 131 (181)
T KOG0070|consen 83 --QNTQGLIFVVDSSDRERIEE----AKEELHRMLAEPELRNAPLLVFANKQDLP 131 (181)
T ss_pred --cCCcEEEEEEeCCcHHHHHH----HHHHHHHHHcCcccCCceEEEEechhhcc
Confidence 67899999933322 12332 223333333322 247999999999983
No 317
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.45 E-value=3e-06 Score=79.90 Aligned_cols=124 Identities=19% Similarity=0.355 Sum_probs=76.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCC------------------------------------------------
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSF------------------------------------------------ 68 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~------------------------------------------------ 68 (298)
-.+|+|||..++||||.+..+-...+++-++.
T Consensus 308 LPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~RM 387 (980)
T KOG0447|consen 308 LPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRM 387 (980)
T ss_pred CceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHHH
Confidence 46999999999999999998876543322211
Q ss_pred -----CCcceeEEEEEEEECCe---EEEEEeCCCCCCCC---c---CcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCH
Q 022358 69 -----QSEALRPVMVSRSKGGF---TLNIIDTPGLVEAG---Y---VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDD 134 (298)
Q Consensus 69 -----~~~t~~~~~~~~~~~g~---~l~viDTPG~~~~~---~---~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~ 134 (298)
.++|.....+...+.|. +++++|.||+..+- . ..+.+...-+.+. ..|++|++|+. +..++.
T Consensus 388 r~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM--~NPNAIILCIQ--DGSVDA 463 (980)
T KOG0447|consen 388 RKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYM--QNPNAIILCIQ--DGSVDA 463 (980)
T ss_pred HhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHh--cCCCeEEEEec--cCCcch
Confidence 12233333444555443 57999999998632 1 1123333334444 68999999943 323433
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 135 LDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 135 ~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
++..+..+-.... ..++++|+|+||.|+..
T Consensus 464 -ERSnVTDLVsq~D-P~GrRTIfVLTKVDlAE 493 (980)
T KOG0447|consen 464 -ERSIVTDLVSQMD-PHGRRTIFVLTKVDLAE 493 (980)
T ss_pred -hhhhHHHHHHhcC-CCCCeeEEEEeecchhh
Confidence 4444444433332 23589999999999853
No 318
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.45 E-value=9.4e-07 Score=78.64 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=44.1
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh------cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEE
Q 022358 83 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLL------NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSL 156 (298)
Q Consensus 83 ~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~------~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~i 156 (298)
.+..++++||||.... +....++++.... ...+|.+++|++.. ....+......+.+.. ...-
T Consensus 153 ~~~D~ViIDT~G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~---~~~~~~~~~~~f~~~~-----~~~g 221 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT---TGQNALEQAKVFNEAV-----GLTG 221 (272)
T ss_pred CCCCEEEEeCCCCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEEECC---CCHHHHHHHHHHHhhC-----CCCE
Confidence 4568999999998543 3344444444321 23488899995553 2333343334444433 3567
Q ss_pred EEEeCcCCCC
Q 022358 157 LVLTHAQLCP 166 (298)
Q Consensus 157 vV~tk~D~~~ 166 (298)
+|+||.|...
T Consensus 222 ~IlTKlDe~~ 231 (272)
T TIGR00064 222 IILTKLDGTA 231 (272)
T ss_pred EEEEccCCCC
Confidence 9999999853
No 319
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=2e-06 Score=81.16 Aligned_cols=112 Identities=21% Similarity=0.211 Sum_probs=72.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccc--------------ccCCCCcceeEEEEEEEECC---eEEEEEeCCCCCCCCc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVT--------------VNSFQSEALRPVMVSRSKGG---FTLNIIDTPGLVEAGY 100 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~--------------~~~~~~~t~~~~~~~~~~~g---~~l~viDTPG~~~~~~ 100 (298)
-++.++-....|||||..+|+....+. +....+-|...+.++..+.+ .-+.+|||||.-|++.
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~ 140 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG 140 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence 478999999999999999998543211 11122445555666666655 7899999999988775
Q ss_pred CcHHHHHHHHhhhhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 101 VNYQALELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 101 ~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.-... + .-++.+|+| +|+.. ... +.+..+...|..+ -.+|.|+||.|+.
T Consensus 141 EVsRs---l------aac~G~lLv--VDA~qGvqA---QT~anf~lAfe~~--L~iIpVlNKIDlp 190 (650)
T KOG0462|consen 141 EVSRS---L------AACDGALLV--VDASQGVQA---QTVANFYLAFEAG--LAIIPVLNKIDLP 190 (650)
T ss_pred eeheh---h------hhcCceEEE--EEcCcCchH---HHHHHHHHHHHcC--CeEEEeeeccCCC
Confidence 33222 2 467888888 45433 333 2232233333222 6899999999984
No 320
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.43 E-value=4.9e-06 Score=74.78 Aligned_cols=124 Identities=17% Similarity=0.159 Sum_probs=77.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcc----------cccC----------------------CCCcceeEEEEEEE
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVV----------TVNS----------------------FQSEALRPVMVSRS 81 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~----------~~~~----------------------~~~~t~~~~~~~~~ 81 (298)
....||++-+|...-||||||-.|+-.... ..+. .++-|.......+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 346799999999999999999999865211 1110 01112222222234
Q ss_pred ECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEe
Q 022358 82 KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLT 160 (298)
Q Consensus 82 ~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~t 160 (298)
-..+++.|.||||.. ++.+.|.. -...+|+.+++ +|+.. +.+ +.+-...|..++|- +++++.+|
T Consensus 83 T~KRkFIiADTPGHe-------QYTRNMaT--GASTadlAIlL--VDAR~Gvl~-QTrRHs~I~sLLGI---rhvvvAVN 147 (431)
T COG2895 83 TEKRKFIIADTPGHE-------QYTRNMAT--GASTADLAILL--VDARKGVLE-QTRRHSFIASLLGI---RHVVVAVN 147 (431)
T ss_pred cccceEEEecCCcHH-------HHhhhhhc--ccccccEEEEE--EecchhhHH-HhHHHHHHHHHhCC---cEEEEEEe
Confidence 467889999999973 44444431 11467888888 56533 222 23334566667665 89999999
Q ss_pred CcCCCCCCCCCh
Q 022358 161 HAQLCPPDGLNY 172 (298)
Q Consensus 161 k~D~~~~~~~~~ 172 (298)
|+|+.+-++..+
T Consensus 148 KmDLvdy~e~~F 159 (431)
T COG2895 148 KMDLVDYSEEVF 159 (431)
T ss_pred eecccccCHHHH
Confidence 999964444333
No 321
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.43 E-value=5.9e-07 Score=80.17 Aligned_cols=88 Identities=23% Similarity=0.294 Sum_probs=65.7
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC-----------------CeEEEEEeCCCC
Q 022358 33 ENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-----------------GFTLNIIDTPGL 95 (298)
Q Consensus 33 ~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-----------------g~~l~viDTPG~ 95 (298)
+....++|.+||.+++||||++|+|+..... ..++|.+|.++......+. .-.+.++|+.|+
T Consensus 16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL 94 (391)
T KOG1491|consen 16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL 94 (391)
T ss_pred CCCCcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence 3456799999999999999999999998875 7889999988765443321 125899999999
Q ss_pred CCCCc----CcHHHHHHHHhhhhcCCCCEEEEEEeC
Q 022358 96 VEAGY----VNYQALELIKGFLLNKTIDVLLYADRL 127 (298)
Q Consensus 96 ~~~~~----~~~~~~~~i~~~~~~~~~d~vl~v~~~ 127 (298)
-.+.. .....++.+| .+|+++-|++.
T Consensus 95 vkGAs~G~GLGN~FLs~iR------~vDaifhVVr~ 124 (391)
T KOG1491|consen 95 VKGASAGEGLGNKFLSHIR------HVDAIFHVVRA 124 (391)
T ss_pred ccCcccCcCchHHHHHhhh------hccceeEEEEe
Confidence 86443 3345666664 67777777554
No 322
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=2.7e-06 Score=80.78 Aligned_cols=153 Identities=12% Similarity=0.177 Sum_probs=89.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCC--------------ccccc----------------CCCCcceeEEEEEEEECC
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGER--------------VVTVN----------------SFQSEALRPVMVSRSKGG 84 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~--------------~~~~~----------------~~~~~t~~~~~~~~~~~g 84 (298)
...++++++|.+.+|||||.-.|+-.- ....+ ...+.|.......++-..
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 356899999999999999998876320 00000 112333333444455566
Q ss_pred eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCH------HHHHHHHHHHHHhCCCCCceEEEE
Q 022358 85 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDD------LDRQIIKAVTGTFGKQIWRKSLLV 158 (298)
Q Consensus 85 ~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~------~~~~~l~~l~~~~~~~~~~~~ivV 158 (298)
..++++|+||..++- . .+.. ....+|+.++|++.+...|.. ..++. ..+.+.+|- ..+||+
T Consensus 255 ~~~tliDaPGhkdFi--~-nmi~------g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEh-a~llr~Lgi---~qliva 321 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFI--P-NMIS------GASQADVAVLVVDASTGEFESGFDPGGQTREH-ALLLRSLGI---SQLIVA 321 (603)
T ss_pred eeEEEecCCCccccc--h-hhhc------cccccceEEEEEECCcchhhhccCCCCchHHH-HHHHHHcCc---ceEEEE
Confidence 789999999975532 1 1111 125788888885554322211 11222 334445554 789999
Q ss_pred EeCcCCCCCCCCChHHHhhhccHHHHHHHHhhcCCCcccccccCchHH
Q 022358 159 LTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVA 206 (298)
Q Consensus 159 ~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ip~~ 206 (298)
+||+|+.+..+..+++.. ..+.-++.+.++|...++ .-||+.
T Consensus 322 iNKmD~V~Wsq~RF~eIk----~~l~~fL~~~~gf~es~v--~FIPiS 363 (603)
T KOG0458|consen 322 INKMDLVSWSQDRFEEIK----NKLSSFLKESCGFKESSV--KFIPIS 363 (603)
T ss_pred eecccccCccHHHHHHHH----HHHHHHHHHhcCcccCCc--ceEecc
Confidence 999999755554444433 456667755556654321 246654
No 323
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=2.2e-06 Score=85.04 Aligned_cols=115 Identities=12% Similarity=0.161 Sum_probs=76.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcc--cccCC---------------CCcceeEEEEEEEECC-eEEEEEeCCCCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVV--TVNSF---------------QSEALRPVMVSRSKGG-FTLNIIDTPGLVE 97 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~--~~~~~---------------~~~t~~~~~~~~~~~g-~~l~viDTPG~~~ 97 (298)
+--+|.++|+..+|||||.-+|+-.... ..+.. .+-|......+..+.+ ..+++|||||.-|
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 4468999999999999999998743211 11111 1233344455677886 9999999999987
Q ss_pred CCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 98 AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+.. +..+.++ -.|..+.|++... .+........+...+.. .|.++++||+|..
T Consensus 89 Ft~---EV~rslr------vlDgavvVvdave-GV~~QTEtv~rqa~~~~-----vp~i~fiNKmDR~ 141 (697)
T COG0480 89 FTI---EVERSLR------VLDGAVVVVDAVE-GVEPQTETVWRQADKYG-----VPRILFVNKMDRL 141 (697)
T ss_pred cHH---HHHHHHH------hhcceEEEEECCC-CeeecHHHHHHHHhhcC-----CCeEEEEECcccc
Confidence 654 3333443 5587887755554 34443344444444442 8999999999985
No 324
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.42 E-value=9.6e-07 Score=78.10 Aligned_cols=71 Identities=24% Similarity=0.314 Sum_probs=54.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCC-----CcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHH
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGE-----RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA 105 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~-----~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~ 105 (298)
..+.+++|+|-+|+|||||||++-.. ..+.++..++.|........-.....+.++||||...++..+.+.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~ 216 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVED 216 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHHH
Confidence 36789999999999999999998643 345677888888776654444455679999999999877655443
No 325
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.41 E-value=2.2e-06 Score=77.52 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=30.1
Q ss_pred HHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhC
Q 022358 23 LIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 23 l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g 59 (298)
..++++.+.........|+++|++|+|||||++.+..
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4456666766666788999999999999999999864
No 326
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.38 E-value=2e-06 Score=74.78 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=23.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
..++.-|+|+|-.|+||||++..|.+.
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHH
Confidence 346789999999999999999988754
No 327
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.36 E-value=1.9e-06 Score=79.58 Aligned_cols=124 Identities=21% Similarity=0.202 Sum_probs=63.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcc-----cccCCCCccee----------------EEE-EE---------EEECCe
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVV-----TVNSFQSEALR----------------PVM-VS---------RSKGGF 85 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~-----~~~~~~~~t~~----------------~~~-~~---------~~~~g~ 85 (298)
.-.++++|++|+||||++..|.+.-.. .+.-....+.. +.. .. ..+.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 458999999999999999988653110 11000000000 000 00 113456
Q ss_pred EEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCC---CceEEEEEeCc
Q 022358 86 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQI---WRKSLLVLTHA 162 (298)
Q Consensus 86 ~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~---~~~~ivV~tk~ 162 (298)
.+++|||||.... +....+.+........++-.++|+ +++.-.+.-.++++.+....+... ....=+|+||.
T Consensus 217 DlVLIDTaG~~~~---d~~l~e~La~L~~~~~~~~~lLVL--sAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKl 291 (374)
T PRK14722 217 HMVLIDTIGMSQR---DRTVSDQIAMLHGADTPVQRLLLL--NATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKL 291 (374)
T ss_pred CEEEEcCCCCCcc---cHHHHHHHHHHhccCCCCeEEEEe--cCccChHHHHHHHHHHHHhhcccccccCCCCEEEEecc
Confidence 8999999998532 333334443332223445566673 432211222334555555432210 01346889999
Q ss_pred CCC
Q 022358 163 QLC 165 (298)
Q Consensus 163 D~~ 165 (298)
|..
T Consensus 292 DEt 294 (374)
T PRK14722 292 DEA 294 (374)
T ss_pred ccC
Confidence 985
No 328
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.36 E-value=1.4e-07 Score=76.64 Aligned_cols=118 Identities=13% Similarity=0.105 Sum_probs=71.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccC-CCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNS-FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~-~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
.-++++++|..++||||+|.+.+..-...... ..+................+.+|||.|..+.+.....+ +
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAy---y----- 90 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAY---Y----- 90 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHH---h-----
Confidence 34899999999999999999998553211110 00111100011111223356789999986554322211 1
Q ss_pred cCCCCEEEEEEeCCCCCCC-HHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 115 NKTIDVLLYADRLDAYRVD-DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~-~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
.++.+.++|++.++ +.+ +.-.++.+.+..-.+. .|+++|-||.|+.+
T Consensus 91 -rgaqa~vLVFSTTD-r~SFea~~~w~~kv~~e~~~---IPtV~vqNKIDlve 138 (246)
T KOG4252|consen 91 -RGAQASVLVFSTTD-RYSFEATLEWYNKVQKETER---IPTVFVQNKIDLVE 138 (246)
T ss_pred -ccccceEEEEeccc-HHHHHHHHHHHHHHHHHhcc---CCeEEeeccchhhH
Confidence 57777777766665 322 2335566666666655 89999999999963
No 329
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.36 E-value=5.9e-06 Score=75.12 Aligned_cols=119 Identities=20% Similarity=0.257 Sum_probs=63.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC------CcccccC--CCC---------cce-eEEEEEE-----------------
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE------RVVTVNS--FQS---------EAL-RPVMVSR----------------- 80 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~------~~~~~~~--~~~---------~t~-~~~~~~~----------------- 80 (298)
.+-.|+++|++|+||||++..|.+. .+...+. +.. ... ....+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999888643 2211111 000 000 0001100
Q ss_pred EECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhh------hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCce
Q 022358 81 SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL------LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK 154 (298)
Q Consensus 81 ~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~------~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~ 154 (298)
...+..+++|||||...... ...++++... ....+|-+++|++... ......-.....+.. ..
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~---~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~---g~~~~~~a~~f~~~~-----~~ 261 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKT---NLMEELKKIKRVIKKADPDAPHEVLLVLDATT---GQNALSQAKAFHEAV-----GL 261 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCH---HHHHHHHHHHHHHhhhcCCCCceEEEEEECCC---ChHHHHHHHHHHhhC-----CC
Confidence 12455799999999854332 2222333221 1246788888844442 222222223332222 45
Q ss_pred EEEEEeCcCCC
Q 022358 155 SLLVLTHAQLC 165 (298)
Q Consensus 155 ~ivV~tk~D~~ 165 (298)
.-+|+||.|..
T Consensus 262 ~giIlTKlD~t 272 (318)
T PRK10416 262 TGIILTKLDGT 272 (318)
T ss_pred CEEEEECCCCC
Confidence 67999999975
No 330
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.36 E-value=1.9e-07 Score=81.42 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=33.9
Q ss_pred EEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHH----HHHHhCCCCCceEEEEEeC
Q 022358 86 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKA----VTGTFGKQIWRKSLLVLTH 161 (298)
Q Consensus 86 ~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~----l~~~~~~~~~~~~ivV~tk 161 (298)
.+.++||||..+.-...... ..+-+.+.....-+++++ +|+...+.. ..++.. +.-+.. ...|.|.|+||
T Consensus 92 ~y~l~DtPGQiElf~~~~~~-~~i~~~L~~~~~~~~v~L--vD~~~~~~~-~~f~s~~L~s~s~~~~--~~lP~vnvlsK 165 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSG-RKIVERLQKNGRLVVVFL--VDSSFCSDP-SKFVSSLLLSLSIMLR--LELPHVNVLSK 165 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHH-HHHHHTSSS----EEEEE--E-GGG-SSH-HHHHHHHHHHHHHHHH--HTSEEEEEE--
T ss_pred cEEEEeCCCCEEEEEechhH-HHHHHHHhhhcceEEEEE--EecccccCh-hhHHHHHHHHHHHHhh--CCCCEEEeeec
Confidence 58999999997643333222 233333333344566677 565444332 222221 111111 12899999999
Q ss_pred cCCCC
Q 022358 162 AQLCP 166 (298)
Q Consensus 162 ~D~~~ 166 (298)
+|+.+
T Consensus 166 ~Dl~~ 170 (238)
T PF03029_consen 166 IDLLS 170 (238)
T ss_dssp GGGS-
T ss_pred cCccc
Confidence 99964
No 331
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.34 E-value=4.3e-06 Score=83.29 Aligned_cols=120 Identities=18% Similarity=0.185 Sum_probs=64.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccc-----ccCCCCcceeE---------------EEEE-----------EEECCeE
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVT-----VNSFQSEALRP---------------VMVS-----------RSKGGFT 86 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~-----~~~~~~~t~~~---------------~~~~-----------~~~~g~~ 86 (298)
-.|+++|++|+||||++..|.+.-... +.-....+... ..+. ....+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 478999999999999999988642111 10000001000 0000 0123457
Q ss_pred EEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHH-HHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 87 LNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDR-QIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 87 l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+++|||||... .+....+.+........++-+++| ++++. ...+. ++++.+....+. ...=+|+||.|..
T Consensus 266 ~VLIDTAGRs~---~d~~l~eel~~l~~~~~p~e~~LV--LsAt~-~~~~l~~i~~~f~~~~~~---~i~glIlTKLDEt 336 (767)
T PRK14723 266 LVLIDTVGMSQ---RDRNVSEQIAMLCGVGRPVRRLLL--LNAAS-HGDTLNEVVHAYRHGAGE---DVDGCIITKLDEA 336 (767)
T ss_pred EEEEeCCCCCc---cCHHHHHHHHHHhccCCCCeEEEE--ECCCC-cHHHHHHHHHHHhhcccC---CCCEEEEeccCCC
Confidence 89999999843 233444555443333567777888 45422 22222 233333332111 2446889999985
Q ss_pred C
Q 022358 166 P 166 (298)
Q Consensus 166 ~ 166 (298)
.
T Consensus 337 ~ 337 (767)
T PRK14723 337 T 337 (767)
T ss_pred C
Confidence 3
No 332
>PRK14974 cell division protein FtsY; Provisional
Probab=98.33 E-value=2.6e-06 Score=77.83 Aligned_cols=120 Identities=18% Similarity=0.294 Sum_probs=66.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC------CcccccC--CCCcc----------eeEEEEEE-----------------
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE------RVVTVNS--FQSEA----------LRPVMVSR----------------- 80 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~------~~~~~~~--~~~~t----------~~~~~~~~----------------- 80 (298)
++..|+++|.+|+||||++..|... .+..+.. +.... .....+..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 4678999999999999988777532 2211111 00000 00000000
Q ss_pred EECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEe
Q 022358 81 SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT 160 (298)
Q Consensus 81 ~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~t 160 (298)
...+..+++|||+|... .+...+..++.......+|.+++| +++.. .....+..+.+.+.. ...-+|+|
T Consensus 219 ~~~~~DvVLIDTaGr~~---~~~~lm~eL~~i~~~~~pd~~iLV--l~a~~-g~d~~~~a~~f~~~~-----~~~giIlT 287 (336)
T PRK14974 219 KARGIDVVLIDTAGRMH---TDANLMDELKKIVRVTKPDLVIFV--GDALA-GNDAVEQAREFNEAV-----GIDGVILT 287 (336)
T ss_pred HhCCCCEEEEECCCccC---CcHHHHHHHHHHHHhhCCceEEEe--ecccc-chhHHHHHHHHHhcC-----CCCEEEEe
Confidence 11345799999999854 233455555554444578899999 44422 222233333333332 35679999
Q ss_pred CcCCCC
Q 022358 161 HAQLCP 166 (298)
Q Consensus 161 k~D~~~ 166 (298)
|.|..+
T Consensus 288 KlD~~~ 293 (336)
T PRK14974 288 KVDADA 293 (336)
T ss_pred eecCCC
Confidence 999853
No 333
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.32 E-value=3.3e-06 Score=77.79 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=64.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCc-----ccccCCCCcceeEEE-------------------EE----------EEE
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERV-----VTVNSFQSEALRPVM-------------------VS----------RSK 82 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~-----~~~~~~~~~t~~~~~-------------------~~----------~~~ 82 (298)
.-.|++||+|||||||++-.|-..-. ..++- -|.++.. .. ...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVai---ITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l 279 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAI---ITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL 279 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEE---EEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh
Confidence 56899999999999999877643311 01110 0111100 00 012
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCc
Q 022358 83 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (298)
Q Consensus 83 ~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~ 162 (298)
....+++|||.|. +..+......++.+.......-+.+|++.+. .. +-++.+-+.|+. ...--+++||.
T Consensus 280 ~~~d~ILVDTaGr---s~~D~~~i~el~~~~~~~~~i~~~Lvlsat~---K~---~dlkei~~~f~~--~~i~~~I~TKl 348 (407)
T COG1419 280 RDCDVILVDTAGR---SQYDKEKIEELKELIDVSHSIEVYLVLSATT---KY---EDLKEIIKQFSL--FPIDGLIFTKL 348 (407)
T ss_pred hcCCEEEEeCCCC---CccCHHHHHHHHHHHhccccceEEEEEecCc---ch---HHHHHHHHHhcc--CCcceeEEEcc
Confidence 3457899999998 4556677777777764333333444433332 21 223333444432 13446899999
Q ss_pred CCCC
Q 022358 163 QLCP 166 (298)
Q Consensus 163 D~~~ 166 (298)
|...
T Consensus 349 DET~ 352 (407)
T COG1419 349 DETT 352 (407)
T ss_pred cccC
Confidence 9863
No 334
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=1.3e-05 Score=62.93 Aligned_cols=115 Identities=13% Similarity=0.176 Sum_probs=70.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
..+++|+.+|-+++||||+.-.|.-..... ..+ |..-..-...+....+.+||.-|.. .+....+.+.
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~--~ip--TvGFnvetVtykN~kfNvwdvGGqd-------~iRplWrhYy- 82 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSVT--TIP--TVGFNVETVTYKNVKFNVWDVGGQD-------KIRPLWRHYY- 82 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCcc--ccc--ccceeEEEEEeeeeEEeeeeccCch-------hhhHHHHhhc-
Confidence 358999999999999999998887554211 111 2222233456777899999999973 2333333333
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCC-C-CceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQ-I-WRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~-~-~~~~ivV~tk~D~~ 165 (298)
++...++||++..+ -+.. .+.-.++.+..+.. + ..+++|..||-|+.
T Consensus 83 -~gtqglIFV~Dsa~--~dr~-eeAr~ELh~ii~~~em~~~~~LvlANkQDlp 131 (180)
T KOG0071|consen 83 -TGTQGLIFVVDSAD--RDRI-EEARNELHRIINDREMRDAIILILANKQDLP 131 (180)
T ss_pred -cCCceEEEEEeccc--hhhH-HHHHHHHHHHhCCHhhhcceEEEEecCcccc
Confidence 68888888843322 1111 12233444444332 1 25788889999984
No 335
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.31 E-value=1.6e-06 Score=81.20 Aligned_cols=119 Identities=18% Similarity=0.187 Sum_probs=62.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcc-----cccCCCCcceeE---------------EEE-----------EEEECCe
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVV-----TVNSFQSEALRP---------------VMV-----------SRSKGGF 85 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~-----~~~~~~~~t~~~---------------~~~-----------~~~~~g~ 85 (298)
.-.|+++|++|+||||++..|.+.... .++-....+... ... .....+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 358999999999999999988653110 100000000000 000 0113455
Q ss_pred EEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 86 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 86 ~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.+++|||+|... .+....+.+..+.....++-.++| ++++. ...+ +..+...|.. ....=+++||.|..
T Consensus 271 d~VLIDTaGrsq---rd~~~~~~l~~l~~~~~~~~~~LV--l~at~-~~~~---~~~~~~~f~~--~~~~~~I~TKlDEt 339 (420)
T PRK14721 271 HMVLIDTVGMSQ---RDQMLAEQIAMLSQCGTQVKHLLL--LNATS-SGDT---LDEVISAYQG--HGIHGCIITKVDEA 339 (420)
T ss_pred CEEEecCCCCCc---chHHHHHHHHHHhccCCCceEEEE--EcCCC-CHHH---HHHHHHHhcC--CCCCEEEEEeeeCC
Confidence 789999999843 233444555544322345556666 34322 2222 2333333322 14556899999986
Q ss_pred C
Q 022358 166 P 166 (298)
Q Consensus 166 ~ 166 (298)
.
T Consensus 340 ~ 340 (420)
T PRK14721 340 A 340 (420)
T ss_pred C
Confidence 3
No 336
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=2.9e-06 Score=68.33 Aligned_cols=113 Identities=19% Similarity=0.266 Sum_probs=77.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
+.-+++++|--|+|||||++.|-..+.... -.|.+++.-...++|.+++.+|.-|.. +..+..+.|.
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qh----vPTlHPTSE~l~Ig~m~ftt~DLGGH~-------qArr~wkdyf-- 85 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQH----VPTLHPTSEELSIGGMTFTTFDLGGHL-------QARRVWKDYF-- 85 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccccc----CCCcCCChHHheecCceEEEEccccHH-------HHHHHHHHHH--
Confidence 567899999999999999999987765332 235556666778899999999999962 4444455555
Q ss_pred CCCCEEEEEEeCCC-CCCCHHHHHHHHHHHHHhCCC--CCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDA-YRVDDLDRQIIKAVTGTFGKQ--IWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~-~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~tk~D~~ 165 (298)
+.+|.++|.++.-+ .|+.+. ...+...+..+ .+.|+++..||.|..
T Consensus 86 ~~v~~iv~lvda~d~er~~es----~~eld~ll~~e~la~vp~lilgnKId~p 134 (193)
T KOG0077|consen 86 PQVDAIVYLVDAYDQERFAES----KKELDALLSDESLATVPFLILGNKIDIP 134 (193)
T ss_pred hhhceeEeeeehhhHHHhHHH----HHHHHHHHhHHHHhcCcceeecccccCC
Confidence 78899999844432 233322 12222222222 358999999999985
No 337
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.29 E-value=6e-07 Score=81.68 Aligned_cols=77 Identities=21% Similarity=0.350 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhhc--CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCC
Q 022358 21 NKLIELLSKLKQE--NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 98 (298)
Q Consensus 21 ~~l~~~l~~l~~~--~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~ 98 (298)
+.+.++++..... -...+++.|+|-+++||||+||+|.......+++.++.|+.-+.+.+ +..+.++|.||+.-.
T Consensus 234 e~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L---dk~i~llDsPgiv~~ 310 (435)
T KOG2484|consen 234 ETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL---DKKIRLLDSPGIVPP 310 (435)
T ss_pred HHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec---cCCceeccCCceeec
Confidence 4455666665543 34579999999999999999999999998899999988876555443 458899999999754
Q ss_pred Cc
Q 022358 99 GY 100 (298)
Q Consensus 99 ~~ 100 (298)
..
T Consensus 311 ~~ 312 (435)
T KOG2484|consen 311 SI 312 (435)
T ss_pred CC
Confidence 43
No 338
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.26 E-value=2.6e-06 Score=78.40 Aligned_cols=118 Identities=18% Similarity=0.229 Sum_probs=66.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC------CcccccC--CCCcc----------eeEEEEEE-E-------------ECC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGE------RVVTVNS--FQSEA----------LRPVMVSR-S-------------KGG 84 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~------~~~~~~~--~~~~t----------~~~~~~~~-~-------------~~g 84 (298)
.-.|+++|++|+||||++..|... .+..++. +.... .....+.. . ..+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~ 285 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNC 285 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCC
Confidence 457899999999999999888632 2221111 11100 00000100 0 134
Q ss_pred eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCC
Q 022358 85 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (298)
Q Consensus 85 ~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 164 (298)
..+++|||||... .+.+.+.++..+.....+|.+++| +++ .....+ +.+.+.. |.. ....-+|+||.|.
T Consensus 286 ~D~VLIDTAGr~~---~d~~~l~EL~~l~~~~~p~~~~LV--Lsa-g~~~~d--~~~i~~~-f~~--l~i~glI~TKLDE 354 (407)
T PRK12726 286 VDHILIDTVGRNY---LAEESVSEISAYTDVVHPDLTCFT--FSS-GMKSAD--VMTILPK-LAE--IPIDGFIITKMDE 354 (407)
T ss_pred CCEEEEECCCCCc---cCHHHHHHHHHHhhccCCceEEEE--CCC-cccHHH--HHHHHHh-cCc--CCCCEEEEEcccC
Confidence 6899999999843 445566666665544577887888 444 223222 3332222 322 1455789999998
Q ss_pred C
Q 022358 165 C 165 (298)
Q Consensus 165 ~ 165 (298)
.
T Consensus 355 T 355 (407)
T PRK12726 355 T 355 (407)
T ss_pred C
Confidence 5
No 339
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=3.8e-05 Score=68.93 Aligned_cols=116 Identities=13% Similarity=0.223 Sum_probs=65.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC--CcccccCCCCcceeEEEE----EE---------EECCeEEEEEeCCCCCCCCc
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE--RVVTVNSFQSEALRPVMV----SR---------SKGGFTLNIIDTPGLVEAGY 100 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~--~~~~~~~~~~~t~~~~~~----~~---------~~~g~~l~viDTPG~~~~~~ 100 (298)
..+++.++|...+|||||..+|..- ..+.-...+++++..+.. .. .....++++||.||..
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa---- 81 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA---- 81 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH----
Confidence 4699999999999999999999633 222222222222221110 00 0122357999999972
Q ss_pred CcHHHHHHHHhhh-hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCC
Q 022358 101 VNYQALELIKGFL-LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (298)
Q Consensus 101 ~~~~~~~~i~~~~-~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 167 (298)
.. |+..+ ...-+|+.++|+++....-+ ...+.+ .+.+.+ .++.|+|+||.|.++.
T Consensus 82 ---sL---IRtiiggaqiiDlm~lviDv~kG~Qt-QtAEcL-iig~~~----c~klvvvinkid~lpE 137 (522)
T KOG0461|consen 82 ---SL---IRTIIGGAQIIDLMILVIDVQKGKQT-QTAECL-IIGELL----CKKLVVVINKIDVLPE 137 (522)
T ss_pred ---HH---HHHHHhhhheeeeeeEEEehhccccc-ccchhh-hhhhhh----ccceEEEEeccccccc
Confidence 22 22222 12457899999766542222 222222 122222 2678999999998754
No 340
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.23 E-value=2.7e-06 Score=72.22 Aligned_cols=125 Identities=18% Similarity=0.220 Sum_probs=74.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC-eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
.-+|+++|.+|+||||+=..++....+.-...++.|.+..-.+..+.| .-+.+||.-|.... -+.++..-+... -
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~f---men~~~~q~d~i-F 79 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEF---MENYLSSQEDNI-F 79 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHH---HHHHHhhcchhh-h
Confidence 468999999999999988888765544444445555544433333444 57889999887310 000110000000 0
Q ss_pred CCCCEEEEEEeCCCCCCCHHH---HHHHHHHHHHhCCCCCceEEEEEeCcCCCCCC
Q 022358 116 KTIDVLLYADRLDAYRVDDLD---RQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPD 168 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~---~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~ 168 (298)
...++++||+++....+...- ...++.+.+.-++ -.+.+.++|.|+...+
T Consensus 80 ~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~---AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 80 RNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPE---AKIFCLLHKMDLVQED 132 (295)
T ss_pred eeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCc---ceEEEEEeechhcccc
Confidence 467899999887764333221 2344555544333 6788999999996433
No 341
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.22 E-value=3.4e-06 Score=79.71 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=64.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC------CCcccccC--CCCcc----------eeEEEEEE---------------EE
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIG------ERVVTVNS--FQSEA----------LRPVMVSR---------------SK 82 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g------~~~~~~~~--~~~~t----------~~~~~~~~---------------~~ 82 (298)
.+..|+++|.+|+||||++-.|.. ..+..++. +.... .....+.. ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 467899999999999999877742 22211111 00000 00000100 01
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCc
Q 022358 83 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (298)
Q Consensus 83 ~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~ 162 (298)
....++|+||||... .++...++++.......+|.+++|++... .. +.++.... |.+. ....-+|+||.
T Consensus 174 ~~~DvVIIDTAGr~~---~d~~lm~El~~l~~~~~pdevlLVvda~~---gq---~av~~a~~-F~~~-l~i~gvIlTKl 242 (437)
T PRK00771 174 KKADVIIVDTAGRHA---LEEDLIEEMKEIKEAVKPDEVLLVIDATI---GQ---QAKNQAKA-FHEA-VGIGGIIITKL 242 (437)
T ss_pred hcCCEEEEECCCccc---chHHHHHHHHHHHHHhcccceeEEEeccc---cH---HHHHHHHH-HHhc-CCCCEEEEecc
Confidence 234789999999853 34456666665544457888888854432 22 22333332 3221 12456888999
Q ss_pred CCC
Q 022358 163 QLC 165 (298)
Q Consensus 163 D~~ 165 (298)
|..
T Consensus 243 D~~ 245 (437)
T PRK00771 243 DGT 245 (437)
T ss_pred cCC
Confidence 874
No 342
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=1.3e-05 Score=74.07 Aligned_cols=114 Identities=11% Similarity=0.225 Sum_probs=74.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh--CCCccc-------------ccCC------CCcceeEEEEEEEECCeEEEEEeCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVI--GERVVT-------------VNSF------QSEALRPVMVSRSKGGFTLNIIDTPG 94 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~--g~~~~~-------------~~~~------~~~t~~~~~~~~~~~g~~l~viDTPG 94 (298)
+.-+.+++-.+.+|||||.-.|+ |..+.. .+.+ .+-+.......+++++..+.+.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 45678999999999999998776 332111 1111 12223344567789999999999999
Q ss_pred CCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 95 LVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 95 ~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..|.+. ..++.+ ..+|..++| +|+.. +.+...++++.- ++.+ .|++-.+||.|-.
T Consensus 91 HeDFSE---DTYRtL------tAvDsAvMV--IDaAKGiE~qT~KLfeVc-rlR~----iPI~TFiNKlDR~ 146 (528)
T COG4108 91 HEDFSE---DTYRTL------TAVDSAVMV--IDAAKGIEPQTLKLFEVC-RLRD----IPIFTFINKLDRE 146 (528)
T ss_pred ccccch---hHHHHH------HhhheeeEE--EecccCccHHHHHHHHHH-hhcC----CceEEEeeccccc
Confidence 987653 222222 367999999 55433 555445554433 3322 7999999999863
No 343
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.16 E-value=1.4e-06 Score=79.22 Aligned_cols=74 Identities=24% Similarity=0.376 Sum_probs=56.2
Q ss_pred HHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCC
Q 022358 22 KLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG 99 (298)
Q Consensus 22 ~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~ 99 (298)
++...+.+|.. +...+-|.++|.+++||||+||.|-...+..+.+.++.|..-+.+.+. ++|.+||+||+--..
T Consensus 293 ~llRQf~kLh~-dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLm---krIfLIDcPGvVyps 366 (572)
T KOG2423|consen 293 QLLRQFAKLHS-DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLM---KRIFLIDCPGVVYPS 366 (572)
T ss_pred HHHHHHHhhcc-CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHH---hceeEecCCCccCCC
Confidence 34444444443 346799999999999999999999999999999999988744333322 378999999997544
No 344
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.15 E-value=4.4e-07 Score=70.27 Aligned_cols=114 Identities=16% Similarity=0.160 Sum_probs=68.9
Q ss_pred EEEcCCCCCHHHHHHHHhCCCcccccCCCCc---ceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCC
Q 022358 41 LVMGKGGVGKSSTVNSVIGERVVTVNSFQSE---ALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 117 (298)
Q Consensus 41 llvG~~g~GKSSliN~l~g~~~~~~~~~~~~---t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~ 117 (298)
+++|.+++|||.|+-..-.... -.+.+.++ ..+.......-...++.+|||.|..........+. ..
T Consensus 1 mllgds~~gktcllir~kdgaf-l~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayy---------rd 70 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAF-LAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYY---------RD 70 (192)
T ss_pred CccccCccCceEEEEEeccCce-ecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhh---------cc
Confidence 4789999999987643322211 11111111 11111222223345789999999865543333222 58
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 118 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 118 ~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
+|++|+++++.....-+.-+.++..|.+...+. ..++++.||||+.+
T Consensus 71 a~allllydiankasfdn~~~wlsei~ey~k~~--v~l~llgnk~d~a~ 117 (192)
T KOG0083|consen 71 ADALLLLYDIANKASFDNCQAWLSEIHEYAKEA--VALMLLGNKCDLAH 117 (192)
T ss_pred cceeeeeeecccchhHHHHHHHHHHHHHHHHhh--HhHhhhccccccch
Confidence 899999988876322233456788888776443 67899999999853
No 345
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=7.2e-06 Score=84.91 Aligned_cols=151 Identities=19% Similarity=0.133 Sum_probs=84.7
Q ss_pred cCCchhhHHHHHHHHHHhhh--cCC--Cc-----cEEEEEcCCCCCHHHHHHH-HhCCCcccccCCCCcceeEEEEEEEE
Q 022358 13 QQFPSATQNKLIELLSKLKQ--ENV--NT-----LTILVMGKGGVGKSSTVNS-VIGERVVTVNSFQSEALRPVMVSRSK 82 (298)
Q Consensus 13 ~~l~~~~~~~l~~~l~~l~~--~~~--~~-----l~IllvG~~g~GKSSliN~-l~g~~~~~~~~~~~~t~~~~~~~~~~ 82 (298)
.....+.++++.+.++.++. ... +. .=-+|+|++|+||||++.. =..-.........+.....+.+...+
T Consensus 92 ~~~~~~l~~~~~e~~~~l~r~~~~~~~rr~lyeLPWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdww 171 (1188)
T COG3523 92 DAELEELNAQLGEALRTLKRRKRGRPGRRYLYELPWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWW 171 (1188)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcCcccchhhcCCceEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcc
Confidence 44445566666666666654 222 11 1357889999999998744 22212211111111111111222244
Q ss_pred CCeEEEEEeCCCCCCCCc----CcH----HHHHHHHhhhhcCCCCEEEEEEeCCCC-CCCHHHH-HH-------HHHHHH
Q 022358 83 GGFTLNIIDTPGLVEAGY----VNY----QALELIKGFLLNKTIDVLLYADRLDAY-RVDDLDR-QI-------IKAVTG 145 (298)
Q Consensus 83 ~g~~l~viDTPG~~~~~~----~~~----~~~~~i~~~~~~~~~d~vl~v~~~d~~-~~~~~~~-~~-------l~~l~~ 145 (298)
-+..-++|||.|-+-... .+. ..+..++++.....++.|++.+++..- ..+..+. .. +.++.+
T Consensus 172 f~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~ 251 (1188)
T COG3523 172 FTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRE 251 (1188)
T ss_pred cccceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 556789999999885442 111 233444555566789999999777542 2344443 11 334444
Q ss_pred HhCCCCCceEEEEEeCcCCC
Q 022358 146 TFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 146 ~~~~~~~~~~ivV~tk~D~~ 165 (298)
.++- ..|+++++||.|+.
T Consensus 252 tL~~--~~PVYl~lTk~Dll 269 (1188)
T COG3523 252 TLHA--RLPVYLVLTKADLL 269 (1188)
T ss_pred hhcc--CCceEEEEeccccc
Confidence 4443 48999999999986
No 346
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.14 E-value=1.2e-05 Score=76.87 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g 59 (298)
.-.|+|+|++|+||||++..|..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999988864
No 347
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.12 E-value=8.2e-06 Score=77.08 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=18.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 022358 38 LTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~ 58 (298)
-.++++|++|+||||++..|.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA 242 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLA 242 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999887764
No 348
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=2.8e-05 Score=69.23 Aligned_cols=176 Identities=13% Similarity=0.156 Sum_probs=99.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccc-------------------CCCCcceeEEEEE----EE------ECCe
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVN-------------------SFQSEALRPVMVS----RS------KGGF 85 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~-------------------~~~~~t~~~~~~~----~~------~~g~ 85 (298)
...++|.++|....|||||..+|.|--....+ ..+.|... ..|. .+ .--+
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~-~~y~~~~~C~~cg~~~~l~R 86 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRP-ECYTTEPKCPNCGAETELVR 86 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCC-cccccCCCCCCCCCCccEEE
Confidence 35799999999999999999999986221111 01111100 0000 01 1124
Q ss_pred EEEEEeCCCCCCCCcCcHHHHHHHHhhhhc-CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCC
Q 022358 86 TLNIIDTPGLVEAGYVNYQALELIKGFLLN-KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (298)
Q Consensus 86 ~l~viDTPG~~~~~~~~~~~~~~i~~~~~~-~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 164 (298)
.+.++|.||. +.+.. ..++. .-.|..|+|+..+..-..+...+-+-.+. +.|- +++|+|-||.|+
T Consensus 87 ~VSfVDaPGH--------e~LMA--TMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Ale-Iigi---k~iiIvQNKIDl 152 (415)
T COG5257 87 RVSFVDAPGH--------ETLMA--TMLSGAALMDGALLVIAANEPCPQPQTREHLMALE-IIGI---KNIIIVQNKIDL 152 (415)
T ss_pred EEEEeeCCch--------HHHHH--HHhcchhhhcceEEEEecCCCCCCCchHHHHHHHh-hhcc---ceEEEEecccce
Confidence 6899999997 33221 11211 23488888866665444444444444433 3333 799999999999
Q ss_pred CCCCCCChHHHhhhccHHHHHHHHhhcCCCcccccccCchHHhhhcCCccccCCCCcccCCCCCCchHHHHHHHHHHHhc
Q 022358 165 CPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATN 244 (298)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~lp~~~~W~~~L~~~~~~~~~~ 244 (298)
.. ++...++| +.+++|++-.. . .+.+.||++... ..| ++.|++.+.+.++.
T Consensus 153 V~-~E~AlE~y-----~qIk~FvkGt~--A---e~aPIIPiSA~~-----~~N-------------IDal~e~i~~~Ipt 203 (415)
T COG5257 153 VS-RERALENY-----EQIKEFVKGTV--A---ENAPIIPISAQH-----KAN-------------IDALIEAIEKYIPT 203 (415)
T ss_pred ec-HHHHHHHH-----HHHHHHhcccc--c---CCCceeeehhhh-----ccC-------------HHHHHHHHHHhCCC
Confidence 63 22222222 34666664221 1 112346654332 222 89999999999987
Q ss_pred CCCcccchhh
Q 022358 245 KSKSIVVDKK 254 (298)
Q Consensus 245 ~~~~~~~~~~ 254 (298)
-.+++-....
T Consensus 204 P~rd~~~~p~ 213 (415)
T COG5257 204 PERDLDKPPR 213 (415)
T ss_pred CccCCCCCce
Confidence 6666555443
No 349
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=9.9e-05 Score=65.05 Aligned_cols=140 Identities=9% Similarity=0.069 Sum_probs=84.1
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhCCCc----------cccc-----CCCCcceeEEEEEEEECCeEEEEEeCCCCC
Q 022358 32 QENVNTLTILVMGKGGVGKSSTVNSVIGERV----------VTVN-----SFQSEALRPVMVSRSKGGFTLNIIDTPGLV 96 (298)
Q Consensus 32 ~~~~~~l~IllvG~~g~GKSSliN~l~g~~~----------~~~~-----~~~~~t~~~~~~~~~~~g~~l~viDTPG~~ 96 (298)
+......+|..+|....|||||..+|++.-. .... ...+-|..+....++...+.+..+|.||..
T Consensus 7 ~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHa 86 (394)
T COG0050 7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 86 (394)
T ss_pred cCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChH
Confidence 3455679999999999999999999975311 0011 112334444455666778899999999974
Q ss_pred CCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCCCCChHHHh
Q 022358 97 EAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYC 176 (298)
Q Consensus 97 ~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~ 176 (298)
.+.+.+-. ...+.|..++|++.++..+.+. ++-+ .+.+..|- ..+++.+||+|+.+ +..+-+.+
T Consensus 87 -------DYvKNMIt--gAaqmDgAILVVsA~dGpmPqT-rEHi-LlarqvGv---p~ivvflnK~Dmvd--d~ellelV 150 (394)
T COG0050 87 -------DYVKNMIT--GAAQMDGAILVVAATDGPMPQT-REHI-LLARQVGV---PYIVVFLNKVDMVD--DEELLELV 150 (394)
T ss_pred -------HHHHHHhh--hHHhcCccEEEEEcCCCCCCcc-hhhh-hhhhhcCC---cEEEEEEecccccC--cHHHHHHH
Confidence 23222211 1236677777766665333322 2211 23344443 57889999999963 32333333
Q ss_pred hhccHHHHHHHHhh
Q 022358 177 SKRSDALLKTIRLG 190 (298)
Q Consensus 177 ~~~~~~l~~~i~~~ 190 (298)
....++++.+.
T Consensus 151 ---emEvreLLs~y 161 (394)
T COG0050 151 ---EMEVRELLSEY 161 (394)
T ss_pred ---HHHHHHHHHHc
Confidence 35677777654
No 350
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.08 E-value=4.4e-05 Score=71.26 Aligned_cols=112 Identities=19% Similarity=0.239 Sum_probs=67.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccc--------------ccCCCCcceeEEEEEEEEC-----CeEEEEEeCCCCCCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVT--------------VNSFQSEALRPVMVSRSKG-----GFTLNIIDTPGLVEAG 99 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~--------------~~~~~~~t~~~~~~~~~~~-----g~~l~viDTPG~~~~~ 99 (298)
+..++..-..|||||..+|+...... .....+-|...+.....+. ...+.+|||||.-|+.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 56778889999999999998543211 0111233444444444332 2468999999998877
Q ss_pred cCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 100 YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+.-. +.+ ..+...|+| +|++. ..+.+.+...--.+..+ --+|.|+||.|+.
T Consensus 91 YEVS---RSL------AACEGalLv--VDAsQ--GveAQTlAN~YlAle~~--LeIiPViNKIDLP 141 (603)
T COG0481 91 YEVS---RSL------AACEGALLV--VDASQ--GVEAQTLANVYLALENN--LEIIPVLNKIDLP 141 (603)
T ss_pred EEeh---hhH------hhCCCcEEE--EECcc--chHHHHHHHHHHHHHcC--cEEEEeeecccCC
Confidence 6332 222 244556666 45433 23444444333333333 6799999999995
No 351
>PRK10867 signal recognition particle protein; Provisional
Probab=98.07 E-value=5.3e-05 Score=71.56 Aligned_cols=71 Identities=20% Similarity=0.269 Sum_probs=40.5
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcC
Q 022358 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (298)
Q Consensus 84 g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 163 (298)
+..++|+||||... .++....++......-.++-+++| +|+. ..+...+..+.+.+.. ...-+|+||.|
T Consensus 183 ~~DvVIIDTaGrl~---~d~~lm~eL~~i~~~v~p~evllV--lda~-~gq~av~~a~~F~~~~-----~i~giIlTKlD 251 (433)
T PRK10867 183 GYDVVIVDTAGRLH---IDEELMDELKAIKAAVNPDEILLV--VDAM-TGQDAVNTAKAFNEAL-----GLTGVILTKLD 251 (433)
T ss_pred CCCEEEEeCCCCcc---cCHHHHHHHHHHHHhhCCCeEEEE--Eecc-cHHHHHHHHHHHHhhC-----CCCEEEEeCcc
Confidence 45799999999853 233444444443333467778888 4542 2222333444444332 34568889999
Q ss_pred CC
Q 022358 164 LC 165 (298)
Q Consensus 164 ~~ 165 (298)
..
T Consensus 252 ~~ 253 (433)
T PRK10867 252 GD 253 (433)
T ss_pred Cc
Confidence 63
No 352
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=0.00013 Score=67.61 Aligned_cols=113 Identities=17% Similarity=0.158 Sum_probs=79.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcc--cccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVV--TVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~--~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~ 116 (298)
.|+..|..-.|||||+.+++|.... ......+.|.+...+........+.++|.||..+ ....+-. ...
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~-------~i~~mia--g~~ 72 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPD-------FISNLLA--GLG 72 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHH-------HHHHHHh--hhc
Confidence 5788899999999999999987532 2223346677777777777667899999999842 2222211 115
Q ss_pred CCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 117 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 117 ~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.+|..++|+..|. .+.....+.+..+ +.+|. ++.++|+||+|..
T Consensus 73 ~~d~alLvV~~de-Gl~~qtgEhL~iL-dllgi---~~giivltk~D~~ 116 (447)
T COG3276 73 GIDYALLVVAADE-GLMAQTGEHLLIL-DLLGI---KNGIIVLTKADRV 116 (447)
T ss_pred CCceEEEEEeCcc-CcchhhHHHHHHH-HhcCC---CceEEEEeccccc
Confidence 8899999976654 4666666655444 45555 6889999999985
No 353
>PTZ00099 rab6; Provisional
Probab=98.06 E-value=3.1e-05 Score=64.42 Aligned_cols=70 Identities=14% Similarity=0.142 Sum_probs=45.6
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCc
Q 022358 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (298)
Q Consensus 84 g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~ 162 (298)
..++.+|||||........ ..+. .++|++|+|++++... +... ..++..+....+. ..|+++|.||+
T Consensus 28 ~v~l~iwDt~G~e~~~~~~-------~~~~--~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~~~~--~~piilVgNK~ 95 (176)
T PTZ00099 28 PVRLQLWDTAGQERFRSLI-------PSYI--RDSAAAIVVYDITNRQSFENT-TKWIQDILNERGK--DVIIALVGNKT 95 (176)
T ss_pred EEEEEEEECCChHHhhhcc-------HHHh--CCCcEEEEEEECCCHHHHHHH-HHHHHHHHHhcCC--CCeEEEEEECc
Confidence 3578999999985432211 1122 6899999998887532 3322 3455555544433 37899999999
Q ss_pred CCC
Q 022358 163 QLC 165 (298)
Q Consensus 163 D~~ 165 (298)
|+.
T Consensus 96 DL~ 98 (176)
T PTZ00099 96 DLG 98 (176)
T ss_pred ccc
Confidence 985
No 354
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.05 E-value=2.5e-05 Score=69.32 Aligned_cols=118 Identities=19% Similarity=0.178 Sum_probs=65.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC------CcccccCCCC--------cc----eeEEEEE-E-------------EECCe
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGE------RVVTVNSFQS--------EA----LRPVMVS-R-------------SKGGF 85 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~------~~~~~~~~~~--------~t----~~~~~~~-~-------------~~~g~ 85 (298)
-+++++|++|+||||++..|.+. .+..++.-.. .+ ....... . ...+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 69999999999999999887643 1111111000 00 0000000 0 11256
Q ss_pred EEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 86 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 86 ~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.++++||||... .+...++++...+....++.+++| ++++.-...-.++++.+... ..-=+++||.|..
T Consensus 156 D~ViIDt~Gr~~---~~~~~l~el~~~~~~~~~~~~~LV--l~a~~~~~d~~~~~~~f~~~------~~~~~I~TKlDet 224 (270)
T PRK06731 156 DYILIDTAGKNY---RASETVEEMIETMGQVEPDYICLT--LSASMKSKDMIEIITNFKDI------HIDGIVFTKFDET 224 (270)
T ss_pred CEEEEECCCCCc---CCHHHHHHHHHHHhhhCCCeEEEE--EcCccCHHHHHHHHHHhCCC------CCCEEEEEeecCC
Confidence 899999999843 334455556555544567778888 44422112222344433331 4567999999986
Q ss_pred C
Q 022358 166 P 166 (298)
Q Consensus 166 ~ 166 (298)
.
T Consensus 225 ~ 225 (270)
T PRK06731 225 A 225 (270)
T ss_pred C
Confidence 3
No 355
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.04 E-value=7.2e-05 Score=69.72 Aligned_cols=119 Identities=16% Similarity=0.206 Sum_probs=62.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC----------Cccccc--CCCCc---------c--eeEEEEE----------EEE
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE----------RVVTVN--SFQSE---------A--LRPVMVS----------RSK 82 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~----------~~~~~~--~~~~~---------t--~~~~~~~----------~~~ 82 (298)
.+-.|+++|++|+||||++..|... .+..++ .+... . .-+.... ...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 3568999999999999999877531 121111 00000 0 0000100 012
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCC-CCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeC
Q 022358 83 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT-IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH 161 (298)
Q Consensus 83 ~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~-~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk 161 (298)
.+..+++|||||... .+...+..+...+.... .+-+++|++.+. ...+. .+.+... .. ....=+++||
T Consensus 253 ~~~DlVLIDTaGr~~---~~~~~l~el~~~l~~~~~~~e~~LVlsat~---~~~~~--~~~~~~~-~~--~~~~~~I~TK 321 (388)
T PRK12723 253 KDFDLVLVDTIGKSP---KDFMKLAEMKELLNACGRDAEFHLAVSSTT---KTSDV--KEIFHQF-SP--FSYKTVIFTK 321 (388)
T ss_pred CCCCEEEEcCCCCCc---cCHHHHHHHHHHHHhcCCCCeEEEEEcCCC---CHHHH--HHHHHHh-cC--CCCCEEEEEe
Confidence 456799999999853 23333555555553222 334666733332 22222 2333333 11 1355799999
Q ss_pred cCCC
Q 022358 162 AQLC 165 (298)
Q Consensus 162 ~D~~ 165 (298)
.|..
T Consensus 322 lDet 325 (388)
T PRK12723 322 LDET 325 (388)
T ss_pred ccCC
Confidence 9985
No 356
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.03 E-value=3.6e-05 Score=79.52 Aligned_cols=102 Identities=12% Similarity=0.048 Sum_probs=63.5
Q ss_pred CCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC------------------CeEEEEEeCCCCCCCCcCcHHHHHHH
Q 022358 48 VGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG------------------GFTLNIIDTPGLVEAGYVNYQALELI 109 (298)
Q Consensus 48 ~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~------------------g~~l~viDTPG~~~~~~~~~~~~~~i 109 (298)
++||||+.+|.+..++. +...+-|.+..-+..+.. -..+.+|||||..+. ..+
T Consensus 472 ~~KTtLLD~iR~t~v~~-~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F--------~~l 542 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAK-KEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF--------TSL 542 (1049)
T ss_pred cccccHHHHHhCCCccc-ccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH--------HHH
Confidence 35999999999988743 223333433322222221 113899999996322 111
Q ss_pred HhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 110 KGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 110 ~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+. .....+|++++|++.+. .+.....+.+..+... ..|+++|+||+|+.
T Consensus 543 r~-~g~~~aDivlLVVDa~~-Gi~~qT~e~I~~lk~~-----~iPiIVViNKiDL~ 591 (1049)
T PRK14845 543 RK-RGGSLADLAVLVVDINE-GFKPQTIEAINILRQY-----KTPFVVAANKIDLI 591 (1049)
T ss_pred HH-hhcccCCEEEEEEECcc-cCCHhHHHHHHHHHHc-----CCCEEEEEECCCCc
Confidence 11 11256899999977664 3566666666655543 27999999999985
No 357
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.01 E-value=2.3e-05 Score=64.03 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~ 60 (298)
-++++|..|+||||+++.+++.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3679999999999999999865
No 358
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=6.3e-06 Score=76.89 Aligned_cols=23 Identities=17% Similarity=0.489 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g 59 (298)
+..|+++|++|+||||++..|..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999988864
No 359
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.94 E-value=5.2e-05 Score=72.34 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~ 60 (298)
-.++++|++|+||||++..|.+.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHH
Confidence 47999999999999999988754
No 360
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.93 E-value=0.0002 Score=59.12 Aligned_cols=71 Identities=20% Similarity=0.162 Sum_probs=43.3
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcC
Q 022358 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (298)
Q Consensus 84 g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 163 (298)
+..++++||||.... +......+..+.....++.+++|++.. . .....+....+.+..+ ..-+|+||.|
T Consensus 82 ~~d~viiDt~g~~~~---~~~~l~~l~~l~~~~~~~~~~lVv~~~--~-~~~~~~~~~~~~~~~~-----~~~viltk~D 150 (173)
T cd03115 82 NFDVVIVDTAGRLQI---DENLMEELKKIKRVVKPDEVLLVVDAM--T-GQDAVNQAKAFNEALG-----ITGVILTKLD 150 (173)
T ss_pred CCCEEEEECcccchh---hHHHHHHHHHHHhhcCCCeEEEEEECC--C-ChHHHHHHHHHHhhCC-----CCEEEEECCc
Confidence 556899999998432 334555555544334589899995543 2 2233344444444432 3568889999
Q ss_pred CC
Q 022358 164 LC 165 (298)
Q Consensus 164 ~~ 165 (298)
..
T Consensus 151 ~~ 152 (173)
T cd03115 151 GD 152 (173)
T ss_pred CC
Confidence 75
No 361
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.92 E-value=0.00013 Score=68.82 Aligned_cols=71 Identities=21% Similarity=0.238 Sum_probs=41.6
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcC
Q 022358 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (298)
Q Consensus 84 g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 163 (298)
+..++|+||||... .++....++..+...-.+|-+++| +|+.. .....+..+.+.+.. ...=+|+||.|
T Consensus 182 ~~DvVIIDTaGr~~---~d~~l~~eL~~i~~~~~p~e~lLV--vda~t-gq~~~~~a~~f~~~v-----~i~giIlTKlD 250 (428)
T TIGR00959 182 GFDVVIVDTAGRLQ---IDEELMEELAAIKEILNPDEILLV--VDAMT-GQDAVNTAKTFNERL-----GLTGVVLTKLD 250 (428)
T ss_pred CCCEEEEeCCCccc---cCHHHHHHHHHHHHhhCCceEEEE--Eeccc-hHHHHHHHHHHHhhC-----CCCEEEEeCcc
Confidence 45789999999843 333444555444333467888888 44422 233334444444333 34567899998
Q ss_pred CC
Q 022358 164 LC 165 (298)
Q Consensus 164 ~~ 165 (298)
..
T Consensus 251 ~~ 252 (428)
T TIGR00959 251 GD 252 (428)
T ss_pred Cc
Confidence 63
No 362
>PRK01889 GTPase RsgA; Reviewed
Probab=97.90 E-value=1.3e-05 Score=74.12 Aligned_cols=72 Identities=29% Similarity=0.388 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCC-------CcceeEEEEEEEECCeEEEEEeCC
Q 022358 21 NKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQ-------SEALRPVMVSRSKGGFTLNIIDTP 93 (298)
Q Consensus 21 ~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~-------~~t~~~~~~~~~~~g~~l~viDTP 93 (298)
+.+.++...+.. .-+++++|.+|+|||||+|.|+|.....++... .+|.......... ...++|||
T Consensus 183 ~gl~~L~~~L~~----g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~---~~~l~Dtp 255 (356)
T PRK01889 183 EGLDVLAAWLSG----GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPS---GGLLIDTP 255 (356)
T ss_pred ccHHHHHHHhhc----CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecC---CCeecCCC
Confidence 344444444432 358999999999999999999987543333221 1222222222221 23588999
Q ss_pred CCCCCC
Q 022358 94 GLVEAG 99 (298)
Q Consensus 94 G~~~~~ 99 (298)
|+....
T Consensus 256 G~~~~~ 261 (356)
T PRK01889 256 GMRELQ 261 (356)
T ss_pred chhhhc
Confidence 996543
No 363
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=0.00014 Score=71.13 Aligned_cols=115 Identities=13% Similarity=0.127 Sum_probs=71.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEE--EEE----------------EEECCeEEEEEeCCCC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV--MVS----------------RSKGGFTLNIIDTPGL 95 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~--~~~----------------~~~~g~~l~viDTPG~ 95 (298)
..+..-+.++|....|||-|...|-+.++.. +...+.|.... .+. ..+.--.+.+|||||.
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqe-geaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh 550 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQE-GEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH 550 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhcccccc-ccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence 3456789999999999999999999887632 22222222111 110 0122224789999996
Q ss_pred CCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCC
Q 022358 96 VEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (298)
Q Consensus 96 ~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 164 (298)
.. +..++..- ..-+|+.++|+++-- .+.+...+-++.|+... .|+||.+||.|.
T Consensus 551 Es--------FtnlRsrg-sslC~~aIlvvdImh-GlepqtiESi~lLR~rk-----tpFivALNKiDR 604 (1064)
T KOG1144|consen 551 ES--------FTNLRSRG-SSLCDLAILVVDIMH-GLEPQTIESINLLRMRK-----TPFIVALNKIDR 604 (1064)
T ss_pred hh--------hhhhhhcc-ccccceEEEEeehhc-cCCcchhHHHHHHHhcC-----CCeEEeehhhhh
Confidence 32 22232211 146788999966542 35555556666666553 899999999985
No 364
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.00018 Score=58.59 Aligned_cols=118 Identities=11% Similarity=0.095 Sum_probs=69.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCC----CCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSF----QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKG 111 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~----~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~ 111 (298)
....|+++|.-++|||||+-++-.......+.. -..|..-...+.+.++..+.+||.-|.. .++.+..
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe--------~lrSlw~ 87 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE--------SLRSLWK 87 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH--------HHHHHHH
Confidence 568999999999999999977654321111111 0122333445566677899999999972 2333321
Q ss_pred hhhcCCCCEEEEEEeCCC-CCCCHHHHHHHHHHH-HHhCCCCCceEEEEEeCcCCC
Q 022358 112 FLLNKTIDVLLYADRLDA-YRVDDLDRQIIKAVT-GTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 112 ~~~~~~~d~vl~v~~~d~-~~~~~~~~~~l~~l~-~~~~~~~~~~~ivV~tk~D~~ 165 (298)
-. ...+|+++|+++..+ .|+... ...++.+. .-.- -..|+++..||.|+.
T Consensus 88 ~y-Y~~~H~ii~viDa~~~eR~~~~-~t~~~~v~~~E~l--eg~p~L~lankqd~q 139 (197)
T KOG0076|consen 88 KY-YWLAHGIIYVIDATDRERFEES-KTAFEKVVENEKL--EGAPVLVLANKQDLQ 139 (197)
T ss_pred HH-HHHhceeEEeecCCCHHHHHHH-HHHHHHHHHHHHh--cCCchhhhcchhhhh
Confidence 11 147899999955544 234332 22232222 1111 137999999999984
No 365
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=5.8e-05 Score=71.66 Aligned_cols=111 Identities=18% Similarity=0.295 Sum_probs=71.8
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHH
Q 022358 32 QENVNTLTILVMGKGGVGKSSTVNSVIGERVV-TVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIK 110 (298)
Q Consensus 32 ~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~-~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~ 110 (298)
...+.++-++|+|++|.||||||.+|...-.. ..+...+. ........+++++..+|. |-. .+.+..
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GP-----iTvvsgK~RRiTflEcp~--Dl~----~miDva- 131 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGP-----ITVVSGKTRRITFLECPS--DLH----QMIDVA- 131 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCc-----eEEeecceeEEEEEeChH--HHH----HHHhHH-
Confidence 33556788889999999999999999865211 11111111 112233456899999983 111 222211
Q ss_pred hhhhcCCCCEEEEEEeCCCC-CCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 111 GFLLNKTIDVLLYADRLDAY-RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 111 ~~~~~~~~d~vl~v~~~d~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.-+|+||++ +|++ .+.-+.++++..+.... ..+++-|+|+.|++
T Consensus 132 -----KIaDLVlLl--IdgnfGfEMETmEFLnil~~HG----mPrvlgV~ThlDlf 176 (1077)
T COG5192 132 -----KIADLVLLL--IDGNFGFEMETMEFLNILISHG----MPRVLGVVTHLDLF 176 (1077)
T ss_pred -----HhhheeEEE--eccccCceehHHHHHHHHhhcC----CCceEEEEeecccc
Confidence 357999999 5553 36666677887777664 36899999999997
No 366
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=9.8e-05 Score=60.93 Aligned_cols=117 Identities=15% Similarity=0.196 Sum_probs=72.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccC-CCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNS-FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~-~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
-..+++++|..|.||+|++++.+-.+...... ..+....+.......+.+++.+|||.|..-.+...+.+ .|
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgy--yI----- 81 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGY--YI----- 81 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeeccccccc--EE-----
Confidence 45899999999999999999988665432221 11222233333333345899999999986544332221 11
Q ss_pred cCCCCEEEEEEeCCCCCCCH-HHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDD-LDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~-~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+..+.++.+++.+ +++- .-..+.+.+.+.+++ .|+++..||.|..
T Consensus 82 --~~qcAiimFdVts-r~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi~ 127 (216)
T KOG0096|consen 82 --QGQCAIIMFDVTS-RFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDIK 127 (216)
T ss_pred --ecceeEEEeeeee-hhhhhcchHHHHHHHHHhcC---CCeeeeccceecc
Confidence 2334444444554 3322 234566666676665 7999999999974
No 367
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.78 E-value=0.00041 Score=63.87 Aligned_cols=78 Identities=9% Similarity=0.155 Sum_probs=47.4
Q ss_pred EEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCC-------CHHHHHHHHHHHHHhCCC-
Q 022358 79 SRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV-------DDLDRQIIKAVTGTFGKQ- 150 (298)
Q Consensus 79 ~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~-------~~~~~~~l~~l~~~~~~~- 150 (298)
...+++..+.++|..|... ....+.. +. ..+++|+||++++.... ...-.+.+..+...+...
T Consensus 178 ~f~~~~~~~~~~DvgGqr~---~R~kW~~----~f--~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~ 248 (342)
T smart00275 178 AFIVKKLFFRMFDVGGQRS---ERKKWIH----CF--DNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW 248 (342)
T ss_pred EEEECCeEEEEEecCCchh---hhhhHHH----Hh--CCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc
Confidence 4456777889999999732 1112222 22 68999999977765320 111223344444444432
Q ss_pred -CCceEEEEEeCcCCC
Q 022358 151 -IWRKSLLVLTHAQLC 165 (298)
Q Consensus 151 -~~~~~ivV~tk~D~~ 165 (298)
...|+++++||.|.+
T Consensus 249 ~~~~piil~~NK~D~~ 264 (342)
T smart00275 249 FANTSIILFLNKIDLF 264 (342)
T ss_pred ccCCcEEEEEecHHhH
Confidence 237999999999974
No 368
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.76 E-value=6.1e-05 Score=69.84 Aligned_cols=136 Identities=22% Similarity=0.303 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHH-hhhc---CCCccEEEEEcCCCCCHHHHHHHHhC------CCcccccC--------------------
Q 022358 18 ATQNKLIELLSK-LKQE---NVNTLTILVMGKGGVGKSSTVNSVIG------ERVVTVNS-------------------- 67 (298)
Q Consensus 18 ~~~~~l~~~l~~-l~~~---~~~~l~IllvG~~g~GKSSliN~l~g------~~~~~~~~-------------------- 67 (298)
-+.++|.++++. -.+. ...+..|+++|--|+||||++-.|-. ..+.-++.
T Consensus 77 iV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v 156 (451)
T COG0541 77 IVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGV 156 (451)
T ss_pred HHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCC
Confidence 345666666664 1111 23467899999999999998866642 22111110
Q ss_pred --CCCc-ceeEEEE------EEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHH
Q 022358 68 --FQSE-ALRPVMV------SRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQ 138 (298)
Q Consensus 68 --~~~~-t~~~~~~------~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~ 138 (298)
++.. ...+... .....+..++||||.|-. ..+++..++++.....-.||-+|+| +|+ ..-+.-.+
T Consensus 157 ~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl---~ide~Lm~El~~Ik~~~~P~E~llV--vDa-m~GQdA~~ 230 (451)
T COG0541 157 PFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRL---HIDEELMDELKEIKEVINPDETLLV--VDA-MIGQDAVN 230 (451)
T ss_pred ceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc---cccHHHHHHHHHHHhhcCCCeEEEE--Eec-ccchHHHH
Confidence 0000 0000000 011234579999999974 4466777777765555689999999 665 22333344
Q ss_pred HHHHHHHHhCCCCCceEEEEEeCcCC
Q 022358 139 IIKAVTGTFGKQIWRKSLLVLTHAQL 164 (298)
Q Consensus 139 ~l~~l~~~~~~~~~~~~ivV~tk~D~ 164 (298)
..+.+.+.. .-+=||+||.|.
T Consensus 231 ~A~aF~e~l-----~itGvIlTKlDG 251 (451)
T COG0541 231 TAKAFNEAL-----GITGVILTKLDG 251 (451)
T ss_pred HHHHHhhhc-----CCceEEEEcccC
Confidence 555555554 234577777775
No 369
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.00036 Score=67.63 Aligned_cols=115 Identities=17% Similarity=0.265 Sum_probs=67.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccC-------C---------CCcceeEEEEEE---EECC--eEEEEEeC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS-------F---------QSEALRPVMVSR---SKGG--FTLNIIDT 92 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~-------~---------~~~t~~~~~~~~---~~~g--~~l~viDT 92 (298)
...-.++.++|.-++|||+|+..|.+......+. + .+++...+..+. ...| +-++++||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 3445689999999999999999998775422210 0 011111111111 1122 34789999
Q ss_pred CCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHH-HHHHHhCCCCCceEEEEEeCcCC
Q 022358 93 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIK-AVTGTFGKQIWRKSLLVLTHAQL 164 (298)
Q Consensus 93 PG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~-~l~~~~~~~~~~~~ivV~tk~D~ 164 (298)
||.-+. .+ +....+ ..+|++++|+++-. .+.-...++++ .++.. .++++|+||.|.
T Consensus 205 PGHVnF--~D-E~ta~l------~~sDgvVlvvDv~E-GVmlntEr~ikhaiq~~------~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNF--SD-ETTASL------RLSDGVVLVVDVAE-GVMLNTERIIKHAIQNR------LPIVVVINKVDR 261 (971)
T ss_pred CCcccc--hH-HHHHHh------hhcceEEEEEEccc-CceeeHHHHHHHHHhcc------CcEEEEEehhHH
Confidence 998543 33 333333 46798988865543 23222233333 33333 899999999986
No 370
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.58 E-value=0.0011 Score=60.63 Aligned_cols=81 Identities=16% Similarity=0.251 Sum_probs=49.9
Q ss_pred EEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCC-CCHHH--H----HHHHHHHHHhC
Q 022358 76 VMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR-VDDLD--R----QIIKAVTGTFG 148 (298)
Q Consensus 76 ~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~-~~~~~--~----~~l~~l~~~~~ 148 (298)
..+.+.+.+.++.++|.+|.- ....++.. |. .++++|+||++++.+. ...+| . +.++.+...+.
T Consensus 186 ~e~~F~~k~~~f~~~DvGGQR---seRrKWih----cF--e~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n 256 (354)
T KOG0082|consen 186 VEVEFTIKGLKFRMFDVGGQR---SERKKWIH----CF--EDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICN 256 (354)
T ss_pred eEEEEEeCCCceEEEeCCCcH---HHhhhHHH----hh--cCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhc
Confidence 445667788899999999952 11112221 22 7999999998887654 33333 1 12223333332
Q ss_pred CC--CCceEEEEEeCcCCC
Q 022358 149 KQ--IWRKSLLVLTHAQLC 165 (298)
Q Consensus 149 ~~--~~~~~ivV~tk~D~~ 165 (298)
.. ...++|+.+||.|++
T Consensus 257 ~~~F~~tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 257 NKWFANTSIILFLNKKDLF 275 (354)
T ss_pred CcccccCcEEEEeecHHHH
Confidence 22 236899999999986
No 371
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.57 E-value=0.00023 Score=64.08 Aligned_cols=120 Identities=21% Similarity=0.254 Sum_probs=64.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCC------CcccccCCCCcce---------------eEEEEE--------------
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGE------RVVTVNSFQSEAL---------------RPVMVS-------------- 79 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~------~~~~~~~~~~~t~---------------~~~~~~-------------- 79 (298)
.++..|+++|-.|+||||.|-.|... .+... .+.|. .+....
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vlla---A~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDA 213 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLA---AGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDA 213 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEE---ecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHH
Confidence 45889999999999999999877522 11000 00000 000011
Q ss_pred ---EEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhh---hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCc
Q 022358 80 ---RSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL---LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWR 153 (298)
Q Consensus 80 ---~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~---~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~ 153 (298)
..-.+..++++||.|-..+...--.-++.|.+.. ....||-++++ +|+.. -+.-..-.+.+.+..+
T Consensus 214 i~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llv--lDAtt-Gqnal~QAk~F~eav~----- 285 (340)
T COG0552 214 IQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLV--LDATT-GQNALSQAKIFNEAVG----- 285 (340)
T ss_pred HHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEE--EEccc-ChhHHHHHHHHHHhcC-----
Confidence 0124667999999998654321111222333322 12356778888 45422 2222333444455542
Q ss_pred eEEEEEeCcCCC
Q 022358 154 KSLLVLTHAQLC 165 (298)
Q Consensus 154 ~~ivV~tk~D~~ 165 (298)
-.=+++||.|..
T Consensus 286 l~GiIlTKlDgt 297 (340)
T COG0552 286 LDGIILTKLDGT 297 (340)
T ss_pred CceEEEEecccC
Confidence 345899999974
No 372
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.00039 Score=63.53 Aligned_cols=91 Identities=23% Similarity=0.303 Sum_probs=57.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC------Ccc-------cccCCC----Ccce--eEEEEE---------------
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGE------RVV-------TVNSFQ----SEAL--RPVMVS--------------- 79 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~------~~~-------~~~~~~----~~t~--~~~~~~--------------- 79 (298)
..++-.|+++|-.|+||||.+-.+.-+ .+. ..+.+. ..++ -+...+
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~ 177 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD 177 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH
Confidence 445678999999999999999877522 111 111100 0000 111111
Q ss_pred -EEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCC
Q 022358 80 -RSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDA 129 (298)
Q Consensus 80 -~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~ 129 (298)
+.-+++.++|+||.|-. ..+.+.++++++....-.||-++|| +|+
T Consensus 178 ~fKke~fdvIIvDTSGRh---~qe~sLfeEM~~v~~ai~Pd~vi~V--mDa 223 (483)
T KOG0780|consen 178 RFKKENFDVIIVDTSGRH---KQEASLFEEMKQVSKAIKPDEIIFV--MDA 223 (483)
T ss_pred HHHhcCCcEEEEeCCCch---hhhHHHHHHHHHHHhhcCCCeEEEE--Eec
Confidence 12356789999999974 4455777788777666789999999 665
No 373
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.48 E-value=0.00081 Score=54.29 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 022358 40 ILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 40 IllvG~~g~GKSSliN~l~g 59 (298)
|.++|++|+||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999988864
No 374
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=3.4e-05 Score=61.78 Aligned_cols=115 Identities=21% Similarity=0.243 Sum_probs=60.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC---ccee--EEEEEEEE---C----CeEEEEEeCCCCCCCCcCcHHH
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS---EALR--PVMVSRSK---G----GFTLNIIDTPGLVEAGYVNYQA 105 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~---~t~~--~~~~~~~~---~----g~~l~viDTPG~~~~~~~~~~~ 105 (298)
++.+.+|.+|+||||++-..+..... +.+.+ -... ...|.... . ...+.+|||.|.........
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~--~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTT-- 85 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFN--TQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTT-- 85 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCccc--ceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHH--
Confidence 46678899999999988665544321 00000 0011 11121111 1 12578999999854332211
Q ss_pred HHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-hCCCCCceEEEEEeCcCCC
Q 022358 106 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGT-FGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 106 ~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~-~~~~~~~~~ivV~tk~D~~ 165 (298)
.+. ..+=.+|+++++++...--.-++++..++-. +-++ .-+|+..||+|+.
T Consensus 86 -----AFf--RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~--PDivlcGNK~DL~ 137 (219)
T KOG0081|consen 86 -----AFF--RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCEN--PDIVLCGNKADLE 137 (219)
T ss_pred -----HHH--HhhccceEEEeccchHHHHHHHHHHHHHHHhhccCC--CCEEEEcCccchh
Confidence 111 2445677777777532111234555555432 2222 5689999999985
No 375
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.00041 Score=54.82 Aligned_cols=125 Identities=14% Similarity=0.195 Sum_probs=72.4
Q ss_pred HHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcH
Q 022358 24 IELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY 103 (298)
Q Consensus 24 ~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~ 103 (298)
..+++.+.... .+.+|+++|--|+||+++.-.+--.++...-+.++.. ....++...++.|||.-|...- .
T Consensus 6 ~s~f~~L~g~e-~e~rililgldGaGkttIlyrlqvgevvttkPtigfn----ve~v~yKNLk~~vwdLggqtSi---r- 76 (182)
T KOG0072|consen 6 SSLFKALQGPE-REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFN----VETVPYKNLKFQVWDLGGQTSI---R- 76 (182)
T ss_pred HHHHHHhcCCc-cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcC----ccccccccccceeeEccCcccc---c-
Confidence 34556666533 7899999999999999976544333322222222211 2234457778899999987422 1
Q ss_pred HHHHHHHhhhhcCCCCEEEEEEeCCC-CCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCC
Q 022358 104 QALELIKGFLLNKTIDVLLYADRLDA-YRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (298)
Q Consensus 104 ~~~~~i~~~~~~~~~d~vl~v~~~d~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 164 (298)
-+ .|.+. ...|.++||++..+ .+++-.-.++...+++---. ...++++.||.|.
T Consensus 77 Py---WRcYy--~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq--~a~llv~anKqD~ 131 (182)
T KOG0072|consen 77 PY---WRCYY--ADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQ--HAKLLVFANKQDY 131 (182)
T ss_pred HH---HHHHh--cccceEEEEEeccchhhhhhhHHHHHHHhccHhhc--CceEEEEeccccc
Confidence 12 22111 57899999944432 12444444444444432211 2568899999987
No 376
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.00038 Score=65.11 Aligned_cols=78 Identities=18% Similarity=0.237 Sum_probs=47.8
Q ss_pred ECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceE--EEEE
Q 022358 82 KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKS--LLVL 159 (298)
Q Consensus 82 ~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~--ivV~ 159 (298)
.+|+.++++||.|-- +.++..+..+.++....+||.|+|| -.+ -+...-.+-++.+.+.+++....+. -+++
T Consensus 464 ~~gfDVvLiDTAGR~---~~~~~lm~~l~k~~~~~~pd~i~~v--gea-lvg~dsv~q~~~fn~al~~~~~~r~id~~~l 537 (587)
T KOG0781|consen 464 NQGFDVVLIDTAGRM---HNNAPLMTSLAKLIKVNKPDLILFV--GEA-LVGNDSVDQLKKFNRALADHSTPRLIDGILL 537 (587)
T ss_pred hcCCCEEEEeccccc---cCChhHHHHHHHHHhcCCCceEEEe--hhh-hhCcHHHHHHHHHHHHHhcCCCccccceEEE
Confidence 357789999999973 3344556666677777899999999 332 1222223334444444443221222 3889
Q ss_pred eCcCCC
Q 022358 160 THAQLC 165 (298)
Q Consensus 160 tk~D~~ 165 (298)
||+|..
T Consensus 538 tk~dtv 543 (587)
T KOG0781|consen 538 TKFDTV 543 (587)
T ss_pred Eeccch
Confidence 999974
No 377
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.47 E-value=0.0006 Score=62.28 Aligned_cols=120 Identities=17% Similarity=0.156 Sum_probs=69.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccC-------------CCCcceeEE--EEEE------------------
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS-------------FQSEALRPV--MVSR------------------ 80 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~-------------~~~~t~~~~--~~~~------------------ 80 (298)
....+.+.+.|....|||||+-+|.-.+.-..+. ..+-|.... .+-+
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 4556889999999999999998876432100000 001111111 1111
Q ss_pred ---EECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEE
Q 022358 81 ---SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLL 157 (298)
Q Consensus 81 ---~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~iv 157 (298)
+....-+.++||-|.. .+++..-+-+...++|-.++++..|+ ..+...++-+-.+..+ ..|+++
T Consensus 194 ~vv~~aDklVsfVDtvGHE-------pwLrTtirGL~gqk~dYglLvVaAdd-G~~~~tkEHLgi~~a~-----~lPviV 260 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHE-------PWLRTTIRGLLGQKVDYGLLVVAADD-GVTKMTKEHLGIALAM-----ELPVIV 260 (527)
T ss_pred HhhhhcccEEEEEecCCcc-------HHHHHHHHHHhccccceEEEEEEccC-CcchhhhHhhhhhhhh-----cCCEEE
Confidence 0112236899999973 34443333344578999999977775 3343333333333332 279999
Q ss_pred EEeCcCCCC
Q 022358 158 VLTHAQLCP 166 (298)
Q Consensus 158 V~tk~D~~~ 166 (298)
|+||+|..+
T Consensus 261 vvTK~D~~~ 269 (527)
T COG5258 261 VVTKIDMVP 269 (527)
T ss_pred EEEecccCc
Confidence 999999963
No 378
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.45 E-value=0.00017 Score=62.46 Aligned_cols=104 Identities=21% Similarity=0.321 Sum_probs=70.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhh-hcC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL-LNK 116 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~-~~~ 116 (298)
-++.++|-+++||||+.+.|.|... .+.++.++|-.+......+.|-++.+.|.||+.+......-.- ++.+ ...
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s-~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg---~qviavar 135 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFS-EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRG---KQVIAVAR 135 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCC-ccccccceeEEEecceEeccccceeeecCcchhcccccCCCCc---cEEEEEee
Confidence 4899999999999999999999764 4555556666666666678899999999999998553321110 0111 125
Q ss_pred CCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhC
Q 022358 117 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFG 148 (298)
Q Consensus 117 ~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~ 148 (298)
.++++++| +|.... -...++++.=.+.||
T Consensus 136 tcnli~~v--ld~~kp-~~hk~~ie~eleg~g 164 (358)
T KOG1487|consen 136 TCNLIFIV--LDVLKP-LSHKKIIEKELEGFG 164 (358)
T ss_pred cccEEEEE--eeccCc-ccHHHHHHHhhhcce
Confidence 77899999 443221 124566666566666
No 379
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.40 E-value=0.002 Score=55.91 Aligned_cols=112 Identities=23% Similarity=0.277 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCc
Q 022358 21 NKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY 100 (298)
Q Consensus 21 ~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~ 100 (298)
+.+.+.....-. +....++++.|..|+||||++.+++..-.. .| +.+|..+.-.- .
T Consensus 37 ~~l~~Nt~~Fl~-G~pannvLL~G~rGtGKSSlVkall~~y~~-------------------~G--LRlIev~k~~L--~ 92 (249)
T PF05673_consen 37 EALIENTEQFLQ-GLPANNVLLWGARGTGKSSLVKALLNEYAD-------------------QG--LRLIEVSKEDL--G 92 (249)
T ss_pred HHHHHHHHHHHc-CCCCcceEEecCCCCCHHHHHHHHHHHHhh-------------------cC--ceEEEECHHHh--c
Confidence 334444444333 446689999999999999999999965321 11 23333333110 0
Q ss_pred CcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeC
Q 022358 101 VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH 161 (298)
Q Consensus 101 ~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk 161 (298)
.-.++.+.++ ......||||++++= ...+.+...++.+.+..-.....++++..|-
T Consensus 93 ~l~~l~~~l~----~~~~kFIlf~DDLsF-e~~d~~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 93 DLPELLDLLR----DRPYKFILFCDDLSF-EEGDTEYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred cHHHHHHHHh----cCCCCEEEEecCCCC-CCCcHHHHHHHHHhcCccccCCCcEEEEEec
Confidence 0113333333 345677788854431 2233345566666655444445678877773
No 380
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.39 E-value=0.00017 Score=71.55 Aligned_cols=125 Identities=18% Similarity=0.205 Sum_probs=71.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEE------------------------------------
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV------------------------------------ 78 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~------------------------------------ 78 (298)
..-..|+|+|..++||||..+++.|..+..-+.. .+|+.+...
T Consensus 27 i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~g-ivTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~ 105 (657)
T KOG0446|consen 27 IPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVG-IVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRS 105 (657)
T ss_pred ccCCceEEecCCCCcchhHHHHhhcccccccccc-ceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHh
Confidence 4557999999999999999999999754222210 111111100
Q ss_pred -----------------EE---EECCeEEEEEeCCCCCCCC------cCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCC
Q 022358 79 -----------------SR---SKGGFTLNIIDTPGLVEAG------YVNYQALELIKGFLLNKTIDVLLYADRLDAYRV 132 (298)
Q Consensus 79 -----------------~~---~~~g~~l~viDTPG~~~~~------~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~ 132 (298)
.. .-+-.+++++|+||+.... ....++...+..++ ..++++++.+......
T Consensus 106 et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi--~~~~~iILav~~an~d- 182 (657)
T KOG0446|consen 106 ETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYI--EKPNRIILAVTPANSD- 182 (657)
T ss_pred hHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhc--cccchhhhhccchhhh-
Confidence 00 0112247899999998632 22234444555555 5667776663332211
Q ss_pred CHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 133 DDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 133 ~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
-.....++..++.-.. ..+++-|+||.|+.+
T Consensus 183 -~ats~alkiarevDp~--g~RTigvitK~Dlmd 213 (657)
T KOG0446|consen 183 -IATSPALVVAREVDPG--GSRTLEVITKFDFMD 213 (657)
T ss_pred -hhcCHHHHHHHhhCCC--ccchhHHhhhHHhhh
Confidence 1123345555555333 378999999999864
No 381
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.00046 Score=62.75 Aligned_cols=118 Identities=17% Similarity=0.127 Sum_probs=68.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccc------c------CCCCcceeEEEEEEEEC---------------------
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTV------N------SFQSEALRPVMVSRSKG--------------------- 83 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~------~------~~~~~t~~~~~~~~~~~--------------------- 83 (298)
++|++++|.-.+|||||.-.|+....-.. + ..++.... ....+.-
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTS--sis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTS--SISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCccc--ccchhcccccccccccchhhcccHHHHH
Confidence 58999999999999999988886532111 0 01111000 1111111
Q ss_pred ---CeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEe
Q 022358 84 ---GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT 160 (298)
Q Consensus 84 ---g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~t 160 (298)
..-++++|..|-.. +.+....-+..-.+|..++|++.+. .++...++-+-.+..+- .|+.+++|
T Consensus 245 e~SSKlvTfiDLAGh~k-------Y~~TTi~gLtgY~Ph~A~LvVsA~~-Gi~~tTrEHLgl~~AL~-----iPfFvlvt 311 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAK-------YQKTTIHGLTGYTPHFACLVVSADR-GITWTTREHLGLIAALN-----IPFFVLVT 311 (591)
T ss_pred hhhcceEEEeecccchh-------hheeeeeecccCCCceEEEEEEcCC-CCccccHHHHHHHHHhC-----CCeEEEEE
Confidence 11267788877631 2111112233457898888877764 45554555555555443 89999999
Q ss_pred CcCCCCCCC
Q 022358 161 HAQLCPPDG 169 (298)
Q Consensus 161 k~D~~~~~~ 169 (298)
|.|+.++..
T Consensus 312 K~Dl~~~~~ 320 (591)
T KOG1143|consen 312 KMDLVDRQG 320 (591)
T ss_pred eeccccchh
Confidence 999975433
No 382
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.0007 Score=58.18 Aligned_cols=122 Identities=15% Similarity=0.127 Sum_probs=66.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~ 116 (298)
..+|+++|---+||||+-...+..-.....-+-..|.....-.....-.++.+||.||.-+.-...-.....+ .
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF------~ 100 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIF------R 100 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHH------h
Confidence 4679999999999999988777542111111111111111111111234788999999876432222222233 4
Q ss_pred CCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 117 TIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 117 ~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
+..+++|| +|+.. .-+.-..+...+.....-+...++=|.+-|.|...
T Consensus 101 ~~gALifv--IDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLs 149 (347)
T KOG3887|consen 101 GVGALIFV--IDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLS 149 (347)
T ss_pred ccCeEEEE--EechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCc
Confidence 78899999 55411 11111222233333333344567788899999863
No 383
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.20 E-value=0.0017 Score=50.46 Aligned_cols=101 Identities=15% Similarity=0.242 Sum_probs=53.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCC--cCcHHHHHHHHhhhhcCC
Q 022358 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG--YVNYQALELIKGFLLNKT 117 (298)
Q Consensus 40 IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~--~~~~~~~~~i~~~~~~~~ 117 (298)
|++.|++|+|||++++.+...-. ..+.-+|.+-+.+.. .....+...+..... ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~----------------------~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 57 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG----------------------FPFIEIDGSELISSYAGDSEQKIRDFFKKAKK-SA 57 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT----------------------SEEEEEETTHHHTSSTTHHHHHHHHHHHHHHH-TS
T ss_pred CEEECcCCCCeeHHHHHHHhhcc----------------------cccccccccccccccccccccccccccccccc-cc
Confidence 68999999999999999886521 234455555554221 111222222222211 22
Q ss_pred CCEEEEEEeCCCCC------CCHHHHHHHHHHHHHhCCCCC--ceEEEEEeCcC
Q 022358 118 IDVLLYADRLDAYR------VDDLDRQIIKAVTGTFGKQIW--RKSLLVLTHAQ 163 (298)
Q Consensus 118 ~d~vl~v~~~d~~~------~~~~~~~~l~~l~~~~~~~~~--~~~ivV~tk~D 163 (298)
..+||++..+|..- ........+..+...+..... .++++|+|-.+
T Consensus 58 ~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred cceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 25899997776421 122234455555555443211 35677776544
No 384
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=97.15 E-value=0.0055 Score=55.62 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=23.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
...-.+++++|++.+||||+...|++.
T Consensus 100 ~~~GPrv~vVGp~d~GKsTl~r~L~ny 126 (415)
T KOG2749|consen 100 SSYGPRVMVVGPTDVGKSTLCRILLNY 126 (415)
T ss_pred hccCCEEEEECCCccchHHHHHHHHHH
Confidence 344689999999999999999999865
No 385
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.12 E-value=0.0015 Score=43.41 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=30.3
Q ss_pred CCCCEEEEEEeCCCCC-CCH-HHHHHHHHHHHHhCCCCCceEEEEEeCcC
Q 022358 116 KTIDVLLYADRLDAYR-VDD-LDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~-~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 163 (298)
.-.++|+|+++++... .+- .+..+++.++..|++ +|+++|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~---~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPN---KPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTT---S-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCC---CCEEEEEeccC
Confidence 3468999998887644 433 346788999999976 89999999998
No 386
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.11 E-value=0.0083 Score=48.06 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 467899999999999999999975
No 387
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.10 E-value=0.0025 Score=58.44 Aligned_cols=26 Identities=23% Similarity=0.403 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
...+|+|.|.||+||||++|+|++.-
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhC
Confidence 56899999999999999999999753
No 388
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.08 E-value=0.0061 Score=50.73 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.-.++++|++|+|||||++.|.|..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3478999999999999999999975
No 389
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.02 E-value=0.0039 Score=57.64 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=21.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g 59 (298)
.....+++|+|+.+||||||.+-|.+
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN 95 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLAN 95 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHH
Confidence 45678999999999999998765543
No 390
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.01 E-value=0.00054 Score=57.74 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g 59 (298)
.-++|+|+.|+||||+.++|..
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred eeEEEEccCCCCcchHHHHHHH
Confidence 3478999999999999999964
No 391
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.00 E-value=0.0086 Score=48.59 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g 59 (298)
..++|.+.|++|+||||++..+..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHH
Confidence 468999999999999999987763
No 392
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.99 E-value=0.0099 Score=49.18 Aligned_cols=65 Identities=18% Similarity=0.173 Sum_probs=39.4
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCc
Q 022358 83 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (298)
Q Consensus 83 ~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~ 162 (298)
....++++|||+.... .....+ ..+|.++++...+..... .-..+++.+.+. + .++.+|+|++
T Consensus 91 ~~~d~viiDtpp~~~~-----~~~~~l------~~aD~vliv~~~~~~~~~-~~~~~~~~l~~~-~----~~~~vV~N~~ 153 (179)
T cd03110 91 EGAELIIIDGPPGIGC-----PVIASL------TGADAALLVTEPTPSGLH-DLERAVELVRHF-G----IPVGVVINKY 153 (179)
T ss_pred cCCCEEEEECcCCCcH-----HHHHHH------HcCCEEEEEecCCcccHH-HHHHHHHHHHHc-C----CCEEEEEeCC
Confidence 4568999999975321 222222 478999999666642221 123444444432 2 5678999999
Q ss_pred CC
Q 022358 163 QL 164 (298)
Q Consensus 163 D~ 164 (298)
|.
T Consensus 154 ~~ 155 (179)
T cd03110 154 DL 155 (179)
T ss_pred CC
Confidence 86
No 393
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.99 E-value=0.012 Score=42.65 Aligned_cols=68 Identities=24% Similarity=0.288 Sum_probs=40.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCC
Q 022358 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 119 (298)
Q Consensus 40 IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d 119 (298)
+++.|..|+||||+.+.+...-. . . + ... .... .+.++|+||..+..... .... ...+|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~-~-~---g--~~v--~~~~----d~iivD~~~~~~~~~~~--~~~~------~~~~~ 60 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALA-K-R---G--KRV--LLID----DYVLIDTPPGLGLLVLL--CLLA------LLAAD 60 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-H-C---C--CeE--EEEC----CEEEEeCCCCccchhhh--hhhh------hhhCC
Confidence 67889999999999988864421 1 0 0 011 0111 78999999986533210 0111 14778
Q ss_pred EEEEEEeCC
Q 022358 120 VLLYADRLD 128 (298)
Q Consensus 120 ~vl~v~~~d 128 (298)
.++++...+
T Consensus 61 ~vi~v~~~~ 69 (99)
T cd01983 61 LVIIVTTPE 69 (99)
T ss_pred EEEEecCCc
Confidence 888884444
No 394
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.98 E-value=0.0088 Score=49.36 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.=.++++|++|+|||||++.|.|..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999975
No 395
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.00038 Score=57.65 Aligned_cols=25 Identities=36% Similarity=0.639 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.+-++|.|++|+||||+++.|+...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4568999999999999999999876
No 396
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.95 E-value=0.0008 Score=45.71 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 022358 39 TILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~ 58 (298)
..++.|++|+||||++.+|.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999998875
No 397
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.92 E-value=0.011 Score=45.97 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
....+++.|++|+|||++++.+...-
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998754
No 398
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.91 E-value=0.00098 Score=55.97 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
++.-|+|+|++|+||||+++.|+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45679999999999999999999764
No 399
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.91 E-value=0.015 Score=46.20 Aligned_cols=99 Identities=21% Similarity=0.250 Sum_probs=54.2
Q ss_pred EEEcCCCCCHHHHHHHHhCC------CcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 41 LVMGKGGVGKSSTVNSVIGE------RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 41 llvG~~g~GKSSliN~l~g~------~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
+.-|+.|+|||++.-.+... .+..+..-+..+. -...++|+|||+..+ ......+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~---------~~yd~VIiD~p~~~~-----~~~~~~l----- 64 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLAN---------LDYDYIIIDTGAGIS-----DNVLDFF----- 64 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCC---------CCCCEEEEECCCCCC-----HHHHHHH-----
Confidence 35578999999987555322 1111111101000 015789999998532 1222223
Q ss_pred cCCCCEEEEEEeCCCCCCCHHH-HHHHHHHHHHhCCCCCceEEEEEeCcCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLD-RQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 164 (298)
..+|.++++...+. .+-.+ ..+++.+.+..+ ..++.+|+|+++.
T Consensus 65 -~~aD~vviv~~~~~--~s~~~~~~~l~~l~~~~~---~~~~~lVvN~~~~ 109 (139)
T cd02038 65 -LAADEVIVVTTPEP--TSITDAYALIKKLAKQLR---VLNFRVVVNRAES 109 (139)
T ss_pred -HhCCeEEEEcCCCh--hHHHHHHHHHHHHHHhcC---CCCEEEEEeCCCC
Confidence 46799999954443 22111 345556655432 2578899999863
No 400
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.91 E-value=0.0017 Score=56.23 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 21 NKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 21 ~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
..+.+.+..+.....++..|.+.|++|+|||||++.|.+.-
T Consensus 17 ~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 17 KPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 33444555555556678999999999999999999998764
No 401
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.90 E-value=0.00057 Score=56.69 Aligned_cols=23 Identities=39% Similarity=0.684 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.|+|+|++|+||||+++.|.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 58999999999999999999864
No 402
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=96.89 E-value=0.0062 Score=48.85 Aligned_cols=117 Identities=18% Similarity=0.133 Sum_probs=69.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
-.++|.++|....|||||+-...|........ ...............| ..+.+||.-|..++. +.+- .
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~-q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~-------n~lP--i 88 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYT-QTLGVNFMDKTVSIRGTDISFSIWDLGGQREFI-------NMLP--I 88 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHH-HHhCccceeeEEEecceEEEEEEEecCCcHhhh-------ccCc--e
Confidence 46899999999999999998888775421110 0001111122222333 356899999974221 1110 1
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.+..+-++||.++++... .-..+.++.++..|-+.----|+|.||-|.+
T Consensus 89 ac~dsvaIlFmFDLt~r~---TLnSi~~WY~QAr~~NktAiPilvGTKyD~f 137 (205)
T KOG1673|consen 89 ACKDSVAILFMFDLTRRS---TLNSIKEWYRQARGLNKTAIPILVGTKYDLF 137 (205)
T ss_pred eecCcEEEEEEEecCchH---HHHHHHHHHHHHhccCCccceEEeccchHhh
Confidence 235677889997777521 2234556677776654323346788998874
No 403
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=96.89 E-value=0.0083 Score=53.87 Aligned_cols=38 Identities=29% Similarity=0.550 Sum_probs=28.9
Q ss_pred HHHHHhhhcCC----CccEEEEEcCCCCCHHHHHHHHhCCCc
Q 022358 25 ELLSKLKQENV----NTLTILVMGKGGVGKSSTVNSVIGERV 62 (298)
Q Consensus 25 ~~l~~l~~~~~----~~l~IllvG~~g~GKSSliN~l~g~~~ 62 (298)
++|...+.... ..-+|+|+|..|+||||||..|-|.+.
T Consensus 36 ~iLsev~T~~~sklpsgk~VlvlGdn~sGKtsLi~klqg~e~ 77 (473)
T KOG3905|consen 36 EILSEVSTRTRSKLPSGKNVLVLGDNGSGKTSLISKLQGSET 77 (473)
T ss_pred HHHHHhhhcccccCCCCCeEEEEccCCCchhHHHHHhhcccc
Confidence 44444443333 557999999999999999999988763
No 404
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.89 E-value=0.011 Score=55.15 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=28.5
Q ss_pred HHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 26 LLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 26 ~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
+.+.+.++....+-|.|||+.-+||||||.++...
T Consensus 6 iykDIa~RT~GdIYiGVVGPVRTGKSTFIKRFMel 40 (492)
T PF09547_consen 6 IYKDIAERTGGDIYIGVVGPVRTGKSTFIKRFMEL 40 (492)
T ss_pred HHHHHHHhcCCceEEEeecCcccCchhHHHHHHHH
Confidence 34455566668899999999999999999998743
No 405
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=96.87 E-value=0.0063 Score=53.88 Aligned_cols=69 Identities=20% Similarity=0.239 Sum_probs=44.9
Q ss_pred hhhcCCCccEEEEEcCCCCCHHHHHHHHhCCC-cccccC-CCCcceeEEEEEEE---ECCeEEEEEeCCCCCCC
Q 022358 30 LKQENVNTLTILVMGKGGVGKSSTVNSVIGER-VVTVNS-FQSEALRPVMVSRS---KGGFTLNIIDTPGLVEA 98 (298)
Q Consensus 30 l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~-~~~~~~-~~~~t~~~~~~~~~---~~g~~l~viDTPG~~~~ 98 (298)
++.....=.-|.|+|+..+|||.|+|.|++.. .+.++. ..++|...-..... ..+..+.++||.|+++.
T Consensus 14 l~~~~~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~ 87 (260)
T PF02263_consen 14 LQQIDQPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDV 87 (260)
T ss_dssp HCTTTSBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTT
T ss_pred HhcCCCCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhcccc
Confidence 33333333578899999999999999999853 233333 33455543333221 24568999999999883
No 406
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.87 E-value=0.0017 Score=54.33 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
..-.++++|++|+||||++++|++.-
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34689999999999999999999864
No 407
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=96.84 E-value=0.0032 Score=62.11 Aligned_cols=114 Identities=17% Similarity=0.186 Sum_probs=66.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC-----------cce----eEEEEEEEECCeEEEEEeCCCCCCCCc
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS-----------EAL----RPVMVSRSKGGFTLNIIDTPGLVEAGY 100 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~-----------~t~----~~~~~~~~~~g~~l~viDTPG~~~~~~ 100 (298)
.--+|.++.....|||||+.+|+.......+...+ +++ ....++....+..+++||+||.-|+..
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~s 87 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSS 87 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhh
Confidence 34588999999999999999998765422221111 111 111223344677899999999987654
Q ss_pred CcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCC
Q 022358 101 VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (298)
Q Consensus 101 ~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 164 (298)
.-.. .. .-.|..++++++-. .+... ....+++..-+. ...++|+||+|.
T Consensus 88 evss---as------~l~d~alvlvdvve-gv~~q---t~~vlrq~~~~~--~~~~lvinkidr 136 (887)
T KOG0467|consen 88 EVSS---AS------RLSDGALVLVDVVE-GVCSQ---TYAVLRQAWIEG--LKPILVINKIDR 136 (887)
T ss_pred hhhh---hh------hhcCCcEEEEeecc-ccchh---HHHHHHHHHHcc--CceEEEEehhhh
Confidence 2211 11 13455555533332 23332 233344443332 678999999993
No 408
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.82 E-value=0.0018 Score=59.58 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
...+|+|.|+||+||||++|+|++.-
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHccc
Confidence 56899999999999999999999863
No 409
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.82 E-value=0.0011 Score=52.36 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERV 62 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~ 62 (298)
=.++|+|++|+|||||++.|.|...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CEEEEEccCCCccccceeeeccccc
Confidence 4689999999999999999999864
No 410
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.80 E-value=0.0012 Score=52.49 Aligned_cols=21 Identities=38% Similarity=0.708 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 022358 40 ILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 40 IllvG~~g~GKSSliN~l~g~ 60 (298)
|+++|++|+||||+++.|.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999976
No 411
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.00094 Score=61.54 Aligned_cols=113 Identities=16% Similarity=0.153 Sum_probs=69.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccc--C---------------CCCcceeEEEEEEEECCeEEEEEeCCCCCCCCc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVN--S---------------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY 100 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~--~---------------~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~ 100 (298)
-+|.++....+||||+...|+-...+..+ . ..+-|....-..++|.|.++.+|||||.-|+..
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 37899999999999999888733211111 0 112233334456789999999999999987765
Q ss_pred CcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 101 VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 101 ~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+. |+ .-.|.++.|++.++ .+.. +.+..-++. .....|-+..+||+|..
T Consensus 118 ever-------cl--rvldgavav~dasa-gve~---qtltvwrqa--dk~~ip~~~finkmdk~ 167 (753)
T KOG0464|consen 118 EVER-------CL--RVLDGAVAVFDASA-GVEA---QTLTVWRQA--DKFKIPAHCFINKMDKL 167 (753)
T ss_pred EHHH-------HH--HHhcCeEEEEeccC-Cccc---ceeeeehhc--cccCCchhhhhhhhhhh
Confidence 3332 22 24577788855443 2322 222222221 12237888899999974
No 412
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.79 E-value=0.0011 Score=56.69 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=17.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 022358 39 TILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~ 58 (298)
--+|+|++|+||||..|.+.
T Consensus 4 gqvVIGPPgSGKsTYc~g~~ 23 (290)
T KOG1533|consen 4 GQVVIGPPGSGKSTYCNGMS 23 (290)
T ss_pred ceEEEcCCCCCccchhhhHH
Confidence 35899999999999998764
No 413
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.76 E-value=0.0015 Score=55.76 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
..+.-|+|+|++|+||||+++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35677889999999999999999754
No 414
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.73 E-value=0.0013 Score=50.63 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~ 60 (298)
.|+|.|.+||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
No 415
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.71 E-value=0.0033 Score=52.54 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.6
Q ss_pred Cc-cEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NT-LTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~-l~IllvG~~g~GKSSliN~l~g~ 60 (298)
++ ++|-|.|++|||||+|+-.++..
T Consensus 11 ~~~~~i~v~Gp~GSGKTaLie~~~~~ 36 (202)
T COG0378 11 RPMLRIGVGGPPGSGKTALIEKTLRA 36 (202)
T ss_pred CceEEEEecCCCCcCHHHHHHHHHHH
Confidence 45 89999999999999999887643
No 416
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=96.69 E-value=0.017 Score=52.21 Aligned_cols=137 Identities=9% Similarity=0.106 Sum_probs=79.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCC----------cccccC-----CCCcceeEEEEEEEECCeEEEEEeCCCCCCC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGER----------VVTVNS-----FQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 98 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~----------~~~~~~-----~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~ 98 (298)
....++|.-+|....|||||..+|+.-- ...+.. ..+-|.......++...+.+.=+|.||..
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHA-- 128 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHA-- 128 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchH--
Confidence 4467899999999999999999987320 001111 11223333333444556778889999974
Q ss_pred CcCcHHHHHHHHhhhh-cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCCCCChHHHhh
Q 022358 99 GYVNYQALELIKGFLL-NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCS 177 (298)
Q Consensus 99 ~~~~~~~~~~i~~~~~-~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~ 177 (298)
.+.+.+ ++ ..+-|..++|+...+..+.+ .++-+ .|.+..|- .++++-+||+|.. ++...-+.+
T Consensus 129 -----DYIKNM---ItGaaqMDGaILVVaatDG~MPQ-TrEHl-LLArQVGV---~~ivvfiNKvD~V--~d~e~leLV- 192 (449)
T KOG0460|consen 129 -----DYIKNM---ITGAAQMDGAILVVAATDGPMPQ-TREHL-LLARQVGV---KHIVVFINKVDLV--DDPEMLELV- 192 (449)
T ss_pred -----HHHHHh---hcCccccCceEEEEEcCCCCCcc-hHHHH-HHHHHcCC---ceEEEEEeccccc--CCHHHHHHH-
Confidence 222222 21 14668777776665533332 22222 23445554 7899999999986 232233333
Q ss_pred hccHHHHHHHHhh
Q 022358 178 KRSDALLKTIRLG 190 (298)
Q Consensus 178 ~~~~~l~~~i~~~ 190 (298)
+-.+++++...
T Consensus 193 --EmE~RElLse~ 203 (449)
T KOG0460|consen 193 --EMEIRELLSEF 203 (449)
T ss_pred --HHHHHHHHHHc
Confidence 25567776554
No 417
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.67 E-value=0.0014 Score=56.87 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERV 62 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~ 62 (298)
-|.++|++|||||||.|.|.|-..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998754
No 418
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=96.67 E-value=0.01 Score=45.36 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
++|+++|..|+|||+++..+....
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~ 24 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFP 24 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCC
Confidence 479999999999999999985443
No 419
>PRK13695 putative NTPase; Provisional
Probab=96.63 E-value=0.0092 Score=49.26 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~ 60 (298)
++|+|+|.+|+|||||+..+.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999987643
No 420
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.62 E-value=0.0051 Score=56.03 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~ 60 (298)
-.+|.|--|+|||||+|.++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4677899999999999999854
No 421
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.62 E-value=0.0019 Score=55.65 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERV 62 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~ 62 (298)
-++++|++|||||||+|.|-|-+.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 578999999999999999988764
No 422
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.61 E-value=0.03 Score=53.93 Aligned_cols=113 Identities=18% Similarity=0.154 Sum_probs=62.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeE--EEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRP--VMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~--~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
+=++..|+|+-++|||.++++++|+.... +........- ...........+++-|.+-. +.+....
T Consensus 424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~---------- 491 (625)
T KOG1707|consen 424 KVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTS---------- 491 (625)
T ss_pred eeeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccC----------
Confidence 34799999999999999999999986644 2211111110 11111112224555555443 2221111
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 164 (298)
....+|++.++++....+ -...+..+.+.+...-..|+++|.+|+|+
T Consensus 492 ke~~cDv~~~~YDsS~p~----sf~~~a~v~~~~~~~~~~Pc~~va~K~dl 538 (625)
T KOG1707|consen 492 KEAACDVACLVYDSSNPR----SFEYLAEVYNKYFDLYKIPCLMVATKADL 538 (625)
T ss_pred ccceeeeEEEecccCCch----HHHHHHHHHHHhhhccCCceEEEeecccc
Confidence 013679999996665322 22233333333222234899999999998
No 423
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=96.56 E-value=0.0012 Score=62.40 Aligned_cols=90 Identities=19% Similarity=0.298 Sum_probs=49.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEE----EEEEECC--eEEEEE-----eCCCCCCCCcCcHH
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVM----VSRSKGG--FTLNII-----DTPGLVEAGYVNYQ 104 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~----~~~~~~g--~~l~vi-----DTPG~~~~~~~~~~ 104 (298)
+.=++.++|.+|+|||||+|.|.+.....+..+......... ......+ .+-++| |+||...... .
T Consensus 156 ~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~~~---~ 232 (434)
T PRK08472 156 KGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYGA---F 232 (434)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhHHH---H
Confidence 345889999999999999999997542211111100000000 0001111 144667 8888754321 1
Q ss_pred HHHHHHhhhhcCCCCEEEEEEeCC
Q 022358 105 ALELIKGFLLNKTIDVLLYADRLD 128 (298)
Q Consensus 105 ~~~~i~~~~~~~~~d~vl~v~~~d 128 (298)
..-.+..++.+.+-||+|++++++
T Consensus 233 ~a~~iAEyFrd~G~~Vll~~DslT 256 (434)
T PRK08472 233 CAMSVAEYFKNQGLDVLFIMDSVT 256 (434)
T ss_pred HHHHHHHHHHHcCCCEEEecccch
Confidence 223444555557889999986554
No 424
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.55 E-value=0.032 Score=41.62 Aligned_cols=70 Identities=24% Similarity=0.343 Sum_probs=38.5
Q ss_pred EEEEc-CCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCC
Q 022358 40 ILVMG-KGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (298)
Q Consensus 40 IllvG-~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 118 (298)
|++.| +.|+||||+.-.+...-. ..+ ........+. ...++++|||+..+. .....+ ..+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~-~~~------~~vl~~d~d~-~~d~viiD~p~~~~~-----~~~~~l------~~a 62 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALA-RRG------KRVLLIDLDP-QYDYIIIDTPPSLGL-----LTRNAL------AAA 62 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHH-hCC------CcEEEEeCCC-CCCEEEEeCcCCCCH-----HHHHHH------HHC
Confidence 56666 789999998766543211 100 0111111111 157899999997532 222222 357
Q ss_pred CEEEEEEeCC
Q 022358 119 DVLLYADRLD 128 (298)
Q Consensus 119 d~vl~v~~~d 128 (298)
|.++++...+
T Consensus 63 d~viv~~~~~ 72 (104)
T cd02042 63 DLVLIPVQPS 72 (104)
T ss_pred CEEEEeccCC
Confidence 9999984444
No 425
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.55 E-value=0.0025 Score=53.97 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
...|+++|++|+|||||++.|.+..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4579999999999999999998864
No 426
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.55 E-value=0.011 Score=57.41 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCc
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERV 62 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~ 62 (298)
..=+|+++|+.|+|||||++.|.|...
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~ 373 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELG 373 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcc
Confidence 345899999999999999999987654
No 427
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.54 E-value=0.033 Score=46.87 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.-.++++|++|+|||||++.|.|..
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999999975
No 428
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.50 E-value=0.045 Score=41.34 Aligned_cols=95 Identities=18% Similarity=0.192 Sum_probs=50.1
Q ss_pred EEcCCCCCHHHHHHHHhCC-------CcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 42 VMGKGGVGKSSTVNSVIGE-------RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 42 lvG~~g~GKSSliN~l~g~-------~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
+-++.|+||||+.-.|-.. ++.-...-+. .+..++++|||+.... .....+
T Consensus 5 ~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~------------~~~D~IIiDtpp~~~~-----~~~~~l----- 62 (106)
T cd03111 5 IGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ------------FGDDYVVVDLGRSLDE-----VSLAAL----- 62 (106)
T ss_pred ECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC------------CCCCEEEEeCCCCcCH-----HHHHHH-----
Confidence 3467999999977665432 2111111111 1117899999997431 122222
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH 161 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk 161 (298)
..+|.++++...+...+. .-..+++.+.+.... ...++.+|+|+
T Consensus 63 -~~aD~vlvvv~~~~~s~~-~~~~~~~~l~~~~~~-~~~~~~lVvNr 106 (106)
T cd03111 63 -DQADRVFLVTQQDLPSIR-NAKRLLELLRVLDYS-LPAKIELVLNR 106 (106)
T ss_pred -HHcCeEEEEecCChHHHH-HHHHHHHHHHHcCCC-CcCceEEEecC
Confidence 367999999555532211 123444555544322 12567788875
No 429
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.47 E-value=0.0027 Score=52.42 Aligned_cols=39 Identities=21% Similarity=0.396 Sum_probs=22.5
Q ss_pred HHHHHHHHh-hhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 22 KLIELLSKL-KQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 22 ~l~~~l~~l-~~~~~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
++.++...+ ......+-.++|.|++|+|||++++.+...
T Consensus 8 e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 8 EIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp HHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 344444444 233445688999999999999999998754
No 430
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.47 E-value=0.0023 Score=53.05 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERV 62 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~ 62 (298)
=.++++|++|+|||||.|-|-|-..
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccC
Confidence 4789999999999999999988754
No 431
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.45 E-value=0.0042 Score=56.58 Aligned_cols=25 Identities=40% Similarity=0.676 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
...+|++.|.||+||||++|+|++.
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999975
No 432
>PRK07261 topology modulation protein; Provisional
Probab=96.45 E-value=0.0025 Score=52.73 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.+|+++|.+|+|||||...|...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999988643
No 433
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=96.42 E-value=0.0054 Score=55.64 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
...+|++.|.||+|||||+|+|++.-
T Consensus 172 ~r~NILisGGTGSGKTTlLNal~~~i 197 (355)
T COG4962 172 IRCNILISGGTGSGKTTLLNALSGFI 197 (355)
T ss_pred hceeEEEeCCCCCCHHHHHHHHHhcC
Confidence 34899999999999999999999874
No 434
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.42 E-value=0.047 Score=44.74 Aligned_cols=63 Identities=14% Similarity=0.204 Sum_probs=36.4
Q ss_pred EEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCC
Q 022358 86 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (298)
Q Consensus 86 ~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 164 (298)
.++|+|||+-.+. .....+ ..+|.++++...+...+.. -..+++.+.+. + .....+|+|+.+.
T Consensus 64 d~viiD~p~~~~~-----~~~~~l------~~ad~viiv~~~~~~s~~~-~~~~~~~~~~~-~---~~~~~iv~N~~~~ 126 (179)
T cd02036 64 DYILIDSPAGIER-----GFITAI------APADEALLVTTPEISSLRD-ADRVKGLLEAL-G---IKVVGVIVNRVRP 126 (179)
T ss_pred CEEEEECCCCCcH-----HHHHHH------HhCCcEEEEeCCCcchHHH-HHHHHHHHHHc-C---CceEEEEEeCCcc
Confidence 7899999985322 222222 3678899885555322221 12344445442 1 1467899999875
No 435
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.39 E-value=0.0063 Score=52.49 Aligned_cols=52 Identities=19% Similarity=0.378 Sum_probs=35.2
Q ss_pred hccccCCchhhHHHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 9 WAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 9 ~~~~~~l~~~~~~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
...++++...-.+.+...+..........-.+++.|++|+|||+|.+++...
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4446665544334455555555443334567999999999999999999864
No 436
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.37 E-value=0.003 Score=53.78 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|..
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999975
No 437
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.35 E-value=0.018 Score=45.48 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.....|++.|..|+|||||+..+...
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999865
No 438
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.34 E-value=0.0058 Score=55.24 Aligned_cols=25 Identities=36% Similarity=0.615 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
...+|++.|++|+||||++|+|++.
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~ 155 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAE 155 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999865
No 439
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.34 E-value=0.0032 Score=54.68 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999974
No 440
>PRK08118 topology modulation protein; Reviewed
Probab=96.34 E-value=0.0031 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.+|+|+|++||||||+...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988754
No 441
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.33 E-value=0.0025 Score=53.99 Aligned_cols=22 Identities=41% Similarity=0.601 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 022358 40 ILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 40 IllvG~~g~GKSSliN~l~g~~ 61 (298)
|+++|++|+||||++++|++.-
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998764
No 442
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.32 E-value=0.0032 Score=52.33 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g 59 (298)
.-.++|+|++|+|||||+|.+++
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 45789999999999999999974
No 443
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=96.30 E-value=0.012 Score=54.23 Aligned_cols=142 Identities=11% Similarity=0.096 Sum_probs=77.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCc-----------------cccc-------------CCCCcceeEEEEEEEECC
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERV-----------------VTVN-------------SFQSEALRPVMVSRSKGG 84 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~-----------------~~~~-------------~~~~~t~~~~~~~~~~~g 84 (298)
....+++++|...+||||+-+.|+.... ...+ ...+-|.......++...
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 5679999999999999999888765311 0000 011223333344556667
Q ss_pred eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCC----CCCHH-HHHHHHHHHHHhCCCCCceEEEEE
Q 022358 85 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAY----RVDDL-DRQIIKAVTGTFGKQIWRKSLLVL 159 (298)
Q Consensus 85 ~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~----~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~ 159 (298)
+.+++.|+||... +... +..- ..++|+-++|++.--. .|... +..-...+.+..|. .+.|+++
T Consensus 157 ~~ftiLDApGHk~--fv~n-mI~G------asqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv---~~lVv~v 224 (501)
T KOG0459|consen 157 KRFTILDAPGHKS--FVPN-MIGG------ASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV---KHLIVLI 224 (501)
T ss_pred eeEEeeccCcccc--cchh-hccc------cchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhcc---ceEEEEE
Confidence 7899999999843 2221 1111 1467777777433110 01100 11112223344444 7999999
Q ss_pred eCcCCCCCCCCChHHHhhhccHHHHHHHHhh
Q 022358 160 THAQLCPPDGLNYDVYCSKRSDALLKTIRLG 190 (298)
Q Consensus 160 tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~ 190 (298)
||+|- +...++-+.|-+ ..+.+..+++..
T Consensus 225 NKMdd-PtvnWs~eRy~E-~~~k~~~fLr~~ 253 (501)
T KOG0459|consen 225 NKMDD-PTVNWSNERYEE-CKEKLQPFLRKL 253 (501)
T ss_pred EeccC-CccCcchhhHHH-HHHHHHHHHHHh
Confidence 99986 234444433332 245677777643
No 444
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.30 E-value=0.0033 Score=52.36 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.+|+|+|++||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998865
No 445
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.30 E-value=0.0035 Score=53.52 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
-.++++|++|+|||||++.|.|..
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999974
No 446
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.29 E-value=0.0033 Score=49.79 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 022358 40 ILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 40 IllvG~~g~GKSSliN~l~g~ 60 (298)
|+++|.+|+||||++..+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998744
No 447
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.28 E-value=0.0036 Score=53.34 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
++..|++.|.+|||||||.+.|.+.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999999865
No 448
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.0037 Score=53.68 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999974
No 449
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=96.27 E-value=0.01 Score=56.73 Aligned_cols=118 Identities=15% Similarity=0.258 Sum_probs=62.7
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC---cceeEEEEEEEECCeE--EEEEeCCCCCCCCcCcHHH
Q 022358 31 KQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS---EALRPVMVSRSKGGFT--LNIIDTPGLVEAGYVNYQA 105 (298)
Q Consensus 31 ~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~---~t~~~~~~~~~~~g~~--l~viDTPG~~~~~~~~~~~ 105 (298)
...+-+--.|.|+|+.++|||||+|.|+|........+.+ +|+..-. ....|.+ +.+.|.-|-.....-+++.
T Consensus 31 ~d~Gl~YhVVavmG~QSSGKSTLLN~LFgTnF~~MDA~~gRqQTTKGIWl--ar~~~i~p~i~vmDvEGTDGrERGEDqd 108 (772)
T KOG2203|consen 31 RDCGLSYHVVAVMGSQSSGKSTLLNHLFGTNFREMDAFKGRQQTTKGIWL--ARCAGIEPCILVMDVEGTDGRERGEDQD 108 (772)
T ss_pred cccCcceeEEEEecCcccchHHHHHHHhccChHHHHhhhccccccchhhH--HhhcCCCCceEEEecccCCccccccccc
Confidence 3445566789999999999999999999987655444322 1211100 1123433 7888988865322111111
Q ss_pred HHHHHhhhhcCCCCEEE---EEEeCCCCC--CCHHHHHHHHHHHHHhCCC
Q 022358 106 LELIKGFLLNKTIDVLL---YADRLDAYR--VDDLDRQIIKAVTGTFGKQ 150 (298)
Q Consensus 106 ~~~i~~~~~~~~~d~vl---~v~~~d~~~--~~~~~~~~l~~l~~~~~~~ 150 (298)
++.-.......-.++|| ||.++..+. -.+.-+.+++...++|+++
T Consensus 109 FErksALFaiavSevvivNMW~~qIG~~Q~aN~~LLKTVfeV~lrLF~~r 158 (772)
T KOG2203|consen 109 FERKSALFAIAVSEVVIVNMWEHQIGLYQGANMALLKTVFEVNLRLFSPR 158 (772)
T ss_pred HHHHhHHHHHhhhheehhhHHHHHhhHhhccCcHHHHHHHHHHHHHhCCC
Confidence 11111111223345554 444454322 1223344556667777764
No 450
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.27 E-value=0.0038 Score=52.32 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|..
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999975
No 451
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.27 E-value=0.0037 Score=53.53 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++|+|++|+|||||++.|.|..
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCc
Confidence 468999999999999999999975
No 452
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.26 E-value=0.0038 Score=52.21 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.++|+|++|+||||+++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999997753
No 453
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.26 E-value=0.004 Score=54.24 Aligned_cols=25 Identities=24% Similarity=0.604 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.+++++|+|++|+|||+++-.|+..
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 6789999999999999999988854
No 454
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.26 E-value=0.0038 Score=53.43 Aligned_cols=24 Identities=25% Similarity=0.576 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
-.++++|++|+|||||++.|.|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999974
No 455
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.0038 Score=53.57 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|..
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999974
No 456
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.24 E-value=0.12 Score=46.35 Aligned_cols=114 Identities=11% Similarity=0.096 Sum_probs=62.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCC--------------
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG-------------- 99 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~-------------- 99 (298)
..+...++++|++|-|||++++.+........ + . . ....+++++.+|.-.+..
T Consensus 58 ~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d--~-~---------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 58 RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-D--E-D---------AERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred ccCCCceEEecCCCCcHHHHHHHHHHHCCCCC-C--C-C---------CccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 44567899999999999999999886542111 1 0 0 112378888888766511
Q ss_pred ---cCcHHHHHHHHhhhhcCCCCEEEEEEeCCC--CCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCc
Q 022358 100 ---YVNYQALELIKGFLLNKTIDVLLYADRLDA--YRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (298)
Q Consensus 100 ---~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~--~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~ 162 (298)
....+....+...+..-++-+++ ++.+.. ..-.....+++..|+.+ +++...|+|.|.|..
T Consensus 125 ~~~~~~~~~~~~~~~llr~~~vrmLI-IDE~H~lLaGs~~~qr~~Ln~LK~L-~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 125 RPRDRVAKLEQQVLRLLRRLGVRMLI-IDEFHNLLAGSYRKQREFLNALKFL-GNELQIPIVGVGTRE 190 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEE-eechHHHhcccHHHHHHHHHHHHHH-hhccCCCeEEeccHH
Confidence 11111111222223223333333 222211 01122345666666655 677778999998865
No 457
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.23 E-value=0.06 Score=50.33 Aligned_cols=40 Identities=33% Similarity=0.537 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhhc--CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 21 NKLIELLSKLKQE--NVNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 21 ~~l~~~l~~l~~~--~~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
+++.++...+... +..+..++|.|++|+|||++++.++..
T Consensus 37 ~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 37 EQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3444444444322 345567999999999999999999864
No 458
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.23 E-value=0.004 Score=52.78 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++|+|++|+|||||++.|.|..
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999974
No 459
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.22 E-value=0.005 Score=52.39 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERV 62 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~ 62 (298)
=.++++|++|||||||+..|-+-+.
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcC
Confidence 4689999999999999999988764
No 460
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.22 E-value=0.0052 Score=59.31 Aligned_cols=114 Identities=14% Similarity=0.191 Sum_probs=67.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcc--cccCC---------------CCcceeEEEEEEEECCeEEEEEeCCCCCCCCc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVV--TVNSF---------------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY 100 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~--~~~~~---------------~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~ 100 (298)
-+|.++-.-.+||||+.+.++-+... ..+.. .+.|....-....|...++.+|||||..|+..
T Consensus 40 RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~ 119 (721)
T KOG0465|consen 40 RNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTF 119 (721)
T ss_pred cccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEE
Confidence 47888889999999999998854221 11111 11122222234567788999999999998776
Q ss_pred CcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 101 VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 101 ~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
.-+..++.+ + -+|++++.+. .........-+.+++.. .|-+.-+||.|...
T Consensus 120 EVeRALrVl------D--GaVlvl~aV~--GVqsQt~tV~rQ~~ry~-----vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 120 EVERALRVL------D--GAVLVLDAVA--GVESQTETVWRQMKRYN-----VPRICFINKMDRMG 170 (721)
T ss_pred Eehhhhhhc------c--CeEEEEEccc--ceehhhHHHHHHHHhcC-----CCeEEEEehhhhcC
Confidence 444443322 1 1233332333 33333333444455443 78899999999753
No 461
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.22 E-value=0.0041 Score=52.79 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
-.++++|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999974
No 462
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.22 E-value=0.0037 Score=53.28 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.++++|++|+|||||++.|.|..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999974
No 463
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21 E-value=0.0041 Score=53.05 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
-.++++|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999974
No 464
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.21 E-value=0.0046 Score=42.96 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 022358 40 ILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 40 IllvG~~g~GKSSliN~l~g~ 60 (298)
|++.|.+|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998754
No 465
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.19 E-value=0.004 Score=53.68 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
-.++++|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 478999999999999999999975
No 466
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.19 E-value=0.0041 Score=47.17 Aligned_cols=21 Identities=29% Similarity=0.648 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 022358 38 LTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~ 58 (298)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 468999999999999999986
No 467
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.18 E-value=0.0069 Score=55.19 Aligned_cols=25 Identities=44% Similarity=0.700 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
...+|++.|.+|+||||++|+|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999975
No 468
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.18 E-value=0.0044 Score=52.87 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|..
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999974
No 469
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.18 E-value=0.004 Score=54.50 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~ 60 (298)
--+.++|+.|+|||||+.+|+|-
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999994
No 470
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.17 E-value=0.0042 Score=52.92 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
....|+++|++|+|||||++.|.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999865
No 471
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.16 E-value=0.0048 Score=50.50 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
-.++++|++|+|||||++.|.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999975
No 472
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.16 E-value=0.0044 Score=53.14 Aligned_cols=24 Identities=21% Similarity=0.588 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999875
No 473
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.16 E-value=0.0044 Score=53.96 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|..
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 468999999999999999999874
No 474
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.16 E-value=0.023 Score=48.18 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~ 60 (298)
=+++|+|+.|+||||+++.|.+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 47999999999999999999843
No 475
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.15 E-value=0.0067 Score=53.57 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERV 62 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~ 62 (298)
--+++|.+|+||||+||.|.|-..
T Consensus 26 vTAlFG~SGsGKTslin~IaGL~r 49 (352)
T COG4148 26 ITALFGPSGSGKTSLINMIAGLTR 49 (352)
T ss_pred eEEEecCCCCChhhHHHHHhccCC
Confidence 457889999999999999998743
No 476
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.15 E-value=0.0038 Score=51.68 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~ 60 (298)
.++|+|++||||||+++.|.+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 477
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.15 E-value=0.0047 Score=52.59 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999974
No 478
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.15 E-value=0.0046 Score=53.55 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCc
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERV 62 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~ 62 (298)
.=.++++|++|+|||||++.|.|...
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34789999999999999999999753
No 479
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.14 E-value=0.0049 Score=51.14 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.+.++|++|+|||||++.|.|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999874
No 480
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.14 E-value=0.0085 Score=51.81 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcc
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVV 63 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~ 63 (298)
-=.+.++|++|+|||||.+.|.|-...
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 347899999999999999999998653
No 481
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.14 E-value=0.0044 Score=47.85 Aligned_cols=21 Identities=24% Similarity=0.378 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 022358 40 ILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 40 IllvG~~g~GKSSliN~l~g~ 60 (298)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998754
No 482
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.13 E-value=0.0048 Score=52.60 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
-.++++|++|+|||||++.|.|..
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999974
No 483
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.13 E-value=0.0047 Score=52.90 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|..
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 468899999999999999999975
No 484
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.13 E-value=0.0048 Score=52.96 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|..
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999975
No 485
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.12 E-value=0.009 Score=54.21 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
...+|+++|++|+|||||+++|++.-
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccC
Confidence 45799999999999999999999874
No 486
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.12 E-value=0.0043 Score=56.66 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERV 62 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~ 62 (298)
-++++|++|||||||++.|-|-..
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 378889999999999999998754
No 487
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.11 E-value=0.0051 Score=51.93 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999975
No 488
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.11 E-value=0.023 Score=51.86 Aligned_cols=122 Identities=18% Similarity=0.194 Sum_probs=63.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCc----cc-ccCC-----C------Cc-------ceeEEEEEE-------------EE
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERV----VT-VNSF-----Q------SE-------ALRPVMVSR-------------SK 82 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~----~~-~~~~-----~------~~-------t~~~~~~~~-------------~~ 82 (298)
..++-|-=||||||++|.|+.... +. ++.+ . .+ +..|..|+. ..
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~ 82 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRR 82 (323)
T ss_pred EEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhcc
Confidence 357788899999999999986521 11 1110 1 00 112223331 12
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCc
Q 022358 83 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (298)
Q Consensus 83 ~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~ 162 (298)
++....+|.|-|+.++.-.-+..... ..+...-..|.++-| +|+.++........+.+.+.. ..-=++|+||.
T Consensus 83 ~~~D~ivIEtTGlA~P~pv~~t~~~~-~~l~~~~~ld~vvtv--VDa~~~~~~~~~~~~~~~~Qi----a~AD~ivlNK~ 155 (323)
T COG0523 83 DRPDRLVIETTGLADPAPVIQTFLTD-PELADGVRLDGVVTV--VDAAHFLEGLDAIAELAEDQL----AFADVIVLNKT 155 (323)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHhccc-cccccceeeceEEEE--EeHHHhhhhHHHHHHHHHHHH----HhCcEEEEecc
Confidence 34567999999998763211111100 001122356778888 676555432222222222222 12338999999
Q ss_pred CCCCC
Q 022358 163 QLCPP 167 (298)
Q Consensus 163 D~~~~ 167 (298)
|+.++
T Consensus 156 Dlv~~ 160 (323)
T COG0523 156 DLVDA 160 (323)
T ss_pred cCCCH
Confidence 99743
No 489
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.11 E-value=0.005 Score=52.80 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999975
No 490
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.10 E-value=0.005 Score=53.24 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++|+|++|+|||||++.|.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999974
No 491
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.09 E-value=0.0049 Score=52.57 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 468999999999999999999975
No 492
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.09 E-value=0.0087 Score=53.06 Aligned_cols=37 Identities=27% Similarity=0.490 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 21 NKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 21 ~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
+.+.+.+...-+ ..-+|++.|++|+||||++++|+..
T Consensus 114 ~~~~~~l~~~v~---~~~~ili~G~tGSGKTT~l~all~~ 150 (270)
T PF00437_consen 114 EEIAEFLRSAVR---GRGNILISGPTGSGKTTLLNALLEE 150 (270)
T ss_dssp HHHHHHHHHCHH---TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhhccc---cceEEEEECCCccccchHHHHHhhh
Confidence 344444444322 4689999999999999999999865
No 493
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.08 E-value=0.005 Score=54.25 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++|+|++|+|||||++.|.|..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999975
No 494
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.07 E-value=0.0052 Score=53.24 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++|+|++|+|||||++.|.|..
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999974
No 495
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.07 E-value=0.0047 Score=52.40 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
+++|.++|+.|+||||+++.+++.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 478999999999999999998865
No 496
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.06 E-value=0.0053 Score=53.37 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 28 EFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 468999999999999999999874
No 497
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.05 E-value=0.0055 Score=51.59 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999975
No 498
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.05 E-value=0.0056 Score=52.12 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCc
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERV 62 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~ 62 (298)
.=.++++|++|+|||||++.|.|...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34789999999999999999999753
No 499
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.05 E-value=0.0056 Score=52.20 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
-.++++|++|+|||||++.|.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999974
No 500
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.04 E-value=0.0055 Score=52.42 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 468999999999999999999974
Done!