Query 022358
Match_columns 298
No_of_seqs 263 out of 2662
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 04:11:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022358.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022358hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h65_A Chloroplast outer envel 100.0 1.6E-37 5.4E-42 275.0 22.3 263 1-264 1-265 (270)
2 3def_A T7I23.11 protein; chlor 100.0 7.9E-37 2.7E-41 269.5 20.6 256 1-257 1-256 (262)
3 3lxx_A GTPase IMAP family memb 99.9 6.5E-22 2.2E-26 171.4 15.9 153 35-192 27-183 (239)
4 3lxw_A GTPase IMAP family memb 99.9 3E-21 1E-25 168.4 14.4 154 34-192 18-177 (247)
5 2xtp_A GTPase IMAP family memb 99.8 1.8E-18 6.2E-23 151.4 21.0 187 34-246 19-210 (260)
6 4dhe_A Probable GTP-binding pr 99.7 3.5E-17 1.2E-21 139.3 16.4 124 36-165 28-157 (223)
7 3iev_A GTP-binding protein ERA 99.7 7E-17 2.4E-21 145.1 17.1 123 35-165 8-135 (308)
8 2qu8_A Putative nucleolar GTP- 99.7 2E-16 6.7E-21 135.6 18.1 135 27-167 19-157 (228)
9 1wf3_A GTP-binding protein; GT 99.7 1.7E-16 5.8E-21 142.1 16.8 124 36-165 6-130 (301)
10 2dyk_A GTP-binding protein; GT 99.7 2E-16 6.8E-21 127.2 15.3 120 38-165 2-121 (161)
11 3t5d_A Septin-7; GTP-binding p 99.7 5.3E-17 1.8E-21 143.4 11.9 124 36-165 7-157 (274)
12 2gj8_A MNME, tRNA modification 99.7 1.6E-16 5.5E-21 130.3 13.7 125 36-165 3-128 (172)
13 1svi_A GTP-binding protein YSX 99.7 3.8E-16 1.3E-20 129.8 15.9 121 36-165 22-147 (195)
14 3pqc_A Probable GTP-binding pr 99.7 7.5E-16 2.6E-20 127.7 17.6 121 36-165 22-146 (195)
15 2hjg_A GTP-binding protein ENG 99.7 5.5E-17 1.9E-21 152.5 10.7 127 36-168 174-302 (436)
16 3i8s_A Ferrous iron transport 99.7 5.6E-16 1.9E-20 136.9 13.5 121 36-165 2-125 (274)
17 4dcu_A GTP-binding protein ENG 99.7 3.9E-16 1.3E-20 147.6 13.1 129 35-169 193-323 (456)
18 3tw8_B RAS-related protein RAB 99.7 8.7E-16 3E-20 125.6 12.9 119 35-166 7-127 (181)
19 2g6b_A RAS-related protein RAB 99.7 2.2E-15 7.4E-20 123.4 15.2 123 35-168 8-132 (180)
20 1mky_A Probable GTP-binding pr 99.7 1.2E-15 4.2E-20 143.4 15.3 120 38-165 2-123 (439)
21 3tkl_A RAS-related protein RAB 99.7 1.9E-15 6.6E-20 125.5 14.4 124 34-169 13-138 (196)
22 2lkc_A Translation initiation 99.6 1.5E-15 5E-20 124.2 13.2 115 35-165 6-120 (178)
23 3iby_A Ferrous iron transport 99.6 7.9E-16 2.7E-20 134.6 12.2 119 38-165 2-123 (256)
24 1z2a_A RAS-related protein RAB 99.6 4.1E-15 1.4E-19 120.1 15.5 118 36-166 4-123 (168)
25 1c1y_A RAS-related protein RAP 99.6 1.6E-15 5.6E-20 122.3 13.0 119 36-166 2-122 (167)
26 2erx_A GTP-binding protein DI- 99.6 9.1E-16 3.1E-20 124.3 11.3 121 36-167 2-124 (172)
27 1g16_A RAS-related protein SEC 99.6 3.9E-15 1.3E-19 120.5 14.9 118 36-165 2-121 (170)
28 3a1s_A Iron(II) transport prot 99.6 3.4E-15 1.2E-19 130.8 14.9 119 36-165 4-123 (258)
29 3clv_A RAB5 protein, putative; 99.6 9.3E-15 3.2E-19 121.6 17.0 114 36-163 6-158 (208)
30 1z08_A RAS-related protein RAB 99.6 2.4E-15 8.2E-20 121.8 12.7 119 36-166 5-125 (170)
31 2fg5_A RAB-22B, RAS-related pr 99.6 1.3E-15 4.5E-20 126.8 11.3 120 35-165 21-141 (192)
32 1z0j_A RAB-22, RAS-related pro 99.6 1.2E-15 4.1E-20 123.5 10.8 118 36-166 5-125 (170)
33 4dsu_A GTPase KRAS, isoform 2B 99.6 4.6E-15 1.6E-19 122.3 14.3 118 36-165 3-122 (189)
34 1upt_A ARL1, ADP-ribosylation 99.6 5.4E-15 1.8E-19 119.9 14.3 117 35-166 5-122 (171)
35 2ce2_X GTPase HRAS; signaling 99.6 5.4E-15 1.8E-19 118.7 14.2 119 36-166 2-122 (166)
36 3gee_A MNME, tRNA modification 99.6 1.4E-15 5E-20 144.0 12.3 123 36-165 232-356 (476)
37 1z0f_A RAB14, member RAS oncog 99.6 2.9E-15 9.9E-20 122.3 12.5 120 35-166 13-134 (179)
38 2wji_A Ferrous iron transport 99.6 4.4E-15 1.5E-19 120.6 13.5 120 36-165 2-121 (165)
39 2y8e_A RAB-protein 6, GH09086P 99.6 2.7E-15 9.1E-20 122.5 11.9 120 35-166 12-133 (179)
40 2bme_A RAB4A, RAS-related prot 99.6 3.8E-15 1.3E-19 122.7 12.7 121 34-166 7-129 (186)
41 1wms_A RAB-9, RAB9, RAS-relate 99.6 2E-14 6.7E-19 117.3 16.7 120 36-165 6-129 (177)
42 2bcg_Y Protein YP2, GTP-bindin 99.6 7.3E-15 2.5E-19 123.4 14.4 120 36-167 7-128 (206)
43 2oil_A CATX-8, RAS-related pro 99.6 2.3E-15 7.7E-20 125.1 11.2 124 31-166 19-144 (193)
44 2efe_B Small GTP-binding prote 99.6 4.4E-15 1.5E-19 121.6 12.8 122 35-168 10-133 (181)
45 2nzj_A GTP-binding protein REM 99.6 2.5E-15 8.4E-20 122.4 11.1 123 36-168 3-127 (175)
46 1u8z_A RAS-related protein RAL 99.6 1.5E-15 5.2E-20 122.4 9.7 120 35-166 2-123 (168)
47 3reg_A RHO-like small GTPase; 99.6 8.7E-15 3E-19 121.8 14.6 119 34-166 20-141 (194)
48 2il1_A RAB12; G-protein, GDP, 99.6 1E-14 3.4E-19 121.5 14.9 121 34-166 23-145 (192)
49 1zj6_A ADP-ribosylation factor 99.6 4.1E-14 1.4E-18 117.0 18.5 116 35-165 14-130 (187)
50 3cph_A RAS-related protein SEC 99.6 9.2E-15 3.2E-19 123.1 14.7 117 36-164 19-137 (213)
51 1ek0_A Protein (GTP-binding pr 99.6 7E-15 2.4E-19 118.8 13.1 120 36-167 2-123 (170)
52 2hxs_A RAB-26, RAS-related pro 99.6 8.5E-15 2.9E-19 119.6 13.6 122 35-166 4-129 (178)
53 3kkq_A RAS-related protein M-R 99.6 2.1E-14 7.4E-19 117.9 16.1 124 31-166 12-137 (183)
54 1ksh_A ARF-like protein 2; sma 99.6 2.2E-14 7.7E-19 118.2 16.2 117 35-166 16-133 (186)
55 2fn4_A P23, RAS-related protei 99.6 9.8E-15 3.3E-19 119.3 13.8 121 34-166 6-128 (181)
56 2gf0_A GTP-binding protein DI- 99.6 3.2E-15 1.1E-19 124.5 11.0 120 35-165 6-127 (199)
57 1kao_A RAP2A; GTP-binding prot 99.6 2.7E-15 9.3E-20 120.8 10.2 119 36-166 2-122 (167)
58 1mky_A Probable GTP-binding pr 99.6 2.3E-14 7.8E-19 134.8 18.0 119 36-166 179-306 (439)
59 3q72_A GTP-binding protein RAD 99.6 3.3E-15 1.1E-19 120.7 10.7 122 37-169 2-123 (166)
60 1fzq_A ADP-ribosylation factor 99.6 9.3E-15 3.2E-19 120.6 13.4 125 26-165 5-130 (181)
61 2x77_A ADP-ribosylation factor 99.6 7.5E-15 2.6E-19 121.5 12.9 114 35-165 20-136 (189)
62 2b6h_A ADP-ribosylation factor 99.6 2.1E-14 7.1E-19 119.7 15.5 116 35-165 27-143 (192)
63 3k53_A Ferrous iron transport 99.6 9.5E-15 3.2E-19 128.7 14.0 121 36-165 2-122 (271)
64 1r2q_A RAS-related protein RAB 99.6 5.5E-15 1.9E-19 119.4 11.4 120 36-166 5-125 (170)
65 3con_A GTPase NRAS; structural 99.6 2.4E-14 8.3E-19 118.4 15.5 121 34-166 18-140 (190)
66 1ky3_A GTP-binding protein YPT 99.6 6.7E-15 2.3E-19 120.4 11.8 121 35-165 6-131 (182)
67 1ega_A Protein (GTP-binding pr 99.6 4.5E-15 1.5E-19 132.9 11.5 120 36-165 7-129 (301)
68 2hup_A RAS-related protein RAB 99.6 9.6E-15 3.3E-19 122.6 12.9 123 32-166 24-148 (201)
69 2gf9_A RAS-related protein RAB 99.6 6.6E-15 2.2E-19 122.0 11.6 119 36-166 21-141 (189)
70 2a5j_A RAS-related protein RAB 99.6 1.1E-14 3.6E-19 121.0 12.9 120 35-166 19-140 (191)
71 4dcu_A GTP-binding protein ENG 99.6 1.4E-15 4.6E-20 143.8 8.3 123 35-165 21-144 (456)
72 3t5g_A GTP-binding protein RHE 99.6 2.1E-14 7.2E-19 117.8 14.4 121 36-168 5-127 (181)
73 2fu5_C RAS-related protein RAB 99.6 2.7E-15 9.4E-20 123.4 9.1 120 36-167 7-128 (183)
74 1zd9_A ADP-ribosylation factor 99.6 1.1E-14 3.9E-19 120.6 12.8 118 34-165 19-137 (188)
75 1vg8_A RAS-related protein RAB 99.6 2.3E-14 8E-19 120.1 14.7 121 35-165 6-130 (207)
76 4djt_A GTP-binding nuclear pro 99.6 7.3E-15 2.5E-19 124.5 11.5 119 35-165 9-130 (218)
77 3geh_A MNME, tRNA modification 99.6 2.6E-15 8.7E-20 141.8 9.5 121 36-166 223-344 (462)
78 1moz_A ARL1, ADP-ribosylation 99.6 1.8E-14 6.2E-19 118.3 13.4 115 35-165 16-132 (183)
79 4bas_A ADP-ribosylation factor 99.6 1.9E-14 6.5E-19 119.8 13.6 121 34-166 14-141 (199)
80 1r8s_A ADP-ribosylation factor 99.6 2.3E-14 7.8E-19 115.4 13.7 113 38-165 1-114 (164)
81 2o52_A RAS-related protein RAB 99.6 7.3E-15 2.5E-19 123.2 11.1 121 34-166 22-144 (200)
82 2a9k_A RAS-related protein RAL 99.6 4.9E-15 1.7E-19 121.7 9.9 121 34-166 15-137 (187)
83 3oes_A GTPase rhebl1; small GT 99.6 6.8E-15 2.3E-19 123.3 10.8 120 36-167 23-144 (201)
84 2ged_A SR-beta, signal recogni 99.6 8E-15 2.7E-19 121.7 10.9 121 35-166 46-170 (193)
85 2bov_A RAla, RAS-related prote 99.6 1.4E-14 4.8E-19 121.2 12.5 121 34-166 11-133 (206)
86 1jwy_B Dynamin A GTPase domain 99.6 1.1E-14 3.6E-19 130.7 12.5 126 35-167 22-213 (315)
87 1xzp_A Probable tRNA modificat 99.6 4.3E-15 1.5E-19 140.9 10.3 115 37-165 243-363 (482)
88 3qq5_A Small GTP-binding prote 99.6 3.1E-15 1.1E-19 139.6 9.0 124 35-168 32-156 (423)
89 1z06_A RAS-related protein RAB 99.6 3.1E-14 1.1E-18 117.9 14.2 121 35-166 18-141 (189)
90 2hjg_A GTP-binding protein ENG 99.6 2E-15 6.7E-20 141.9 7.8 122 37-166 3-125 (436)
91 2wjg_A FEOB, ferrous iron tran 99.6 2.3E-14 7.9E-19 118.3 13.3 121 35-165 5-125 (188)
92 3q85_A GTP-binding protein REM 99.6 3.4E-14 1.2E-18 115.0 14.0 119 37-166 2-123 (169)
93 1lnz_A SPO0B-associated GTP-bi 99.6 2.6E-15 8.9E-20 136.5 7.9 120 39-165 160-287 (342)
94 1x3s_A RAS-related protein RAB 99.6 1.7E-14 5.9E-19 119.5 12.0 120 35-165 13-134 (195)
95 3o47_A ADP-ribosylation factor 99.6 4.7E-14 1.6E-18 127.8 15.8 115 36-165 164-279 (329)
96 2e87_A Hypothetical protein PH 99.6 5.8E-14 2E-18 128.6 16.4 125 35-165 165-293 (357)
97 2q3h_A RAS homolog gene family 99.6 2.3E-14 8E-19 119.7 12.4 118 34-165 17-137 (201)
98 3b1v_A Ferrous iron uptake tra 99.6 1.5E-14 5.1E-19 127.6 11.5 119 36-165 2-120 (272)
99 2atv_A RERG, RAS-like estrogen 99.6 3E-14 1E-18 118.8 12.6 119 35-166 26-146 (196)
100 2h17_A ADP-ribosylation factor 99.6 3E-14 1E-18 117.3 12.4 117 34-165 18-135 (181)
101 2h57_A ADP-ribosylation factor 99.6 1.8E-14 6E-19 119.5 11.1 120 34-165 18-139 (190)
102 3cpj_B GTP-binding protein YPT 99.6 2.1E-14 7.3E-19 122.4 11.8 119 36-166 12-132 (223)
103 1zbd_A Rabphilin-3A; G protein 99.6 3.6E-14 1.2E-18 118.7 13.0 119 36-166 7-127 (203)
104 2fv8_A H6, RHO-related GTP-bin 99.6 8.3E-15 2.8E-19 123.4 9.0 116 36-165 24-142 (207)
105 1mh1_A RAC1; GTP-binding, GTPa 99.6 6.1E-15 2.1E-19 121.2 7.8 117 35-165 3-122 (186)
106 2iwr_A Centaurin gamma 1; ANK 99.6 6.4E-14 2.2E-18 114.5 13.8 114 35-165 5-121 (178)
107 3r7w_A Gtpase1, GTP-binding pr 99.6 2.4E-14 8.4E-19 128.4 12.2 124 36-165 2-128 (307)
108 3bc1_A RAS-related protein RAB 99.6 4.5E-14 1.5E-18 116.6 12.9 121 35-166 9-141 (195)
109 2ew1_A RAS-related protein RAB 99.5 4.4E-14 1.5E-18 118.8 12.8 119 35-165 24-144 (201)
110 2p5s_A RAS and EF-hand domain 99.5 6.9E-15 2.4E-19 123.1 7.7 118 35-165 26-146 (199)
111 3gj0_A GTP-binding nuclear pro 99.5 1.1E-14 3.7E-19 123.9 8.9 120 34-165 12-132 (221)
112 3llu_A RAS-related GTP-binding 99.5 5E-14 1.7E-18 117.6 12.8 125 34-165 17-142 (196)
113 2atx_A Small GTP binding prote 99.5 3.2E-14 1.1E-18 118.2 11.4 116 36-165 17-135 (194)
114 2gco_A H9, RHO-related GTP-bin 99.5 1.4E-14 4.6E-19 121.5 8.9 116 36-165 24-142 (201)
115 3c5c_A RAS-like protein 12; GD 99.5 5.9E-14 2E-18 116.3 12.4 118 35-165 19-140 (187)
116 2j1l_A RHO-related GTP-binding 99.5 1.7E-14 5.9E-19 122.2 9.3 117 35-165 32-151 (214)
117 2cxx_A Probable GTP-binding pr 99.5 2.6E-13 9E-18 111.8 16.2 116 38-165 2-135 (190)
118 4dkx_A RAS-related protein RAB 99.5 4.2E-14 1.4E-18 120.6 11.6 123 35-169 11-135 (216)
119 2aka_B Dynamin-1; fusion prote 99.5 7.4E-14 2.5E-18 124.1 13.7 123 36-166 25-206 (299)
120 1m2o_B GTP-binding protein SAR 99.5 5.3E-14 1.8E-18 117.0 11.9 115 36-165 22-137 (190)
121 3l0i_B RAS-related protein RAB 99.5 1.5E-15 5.1E-20 127.2 2.5 121 35-167 31-153 (199)
122 3dz8_A RAS-related protein RAB 99.5 1.7E-14 6E-19 119.7 8.8 119 36-165 22-141 (191)
123 2yc2_C IFT27, small RAB-relate 99.5 2.7E-14 9.3E-19 119.5 9.7 122 36-166 19-146 (208)
124 4gzl_A RAS-related C3 botulinu 99.5 2E-14 6.9E-19 120.9 8.8 117 35-165 28-147 (204)
125 1m7b_A RND3/RHOE small GTP-bin 99.5 2.5E-14 8.5E-19 118.1 8.5 117 35-165 5-124 (184)
126 2fh5_B SR-beta, signal recogni 99.5 2E-13 6.9E-18 115.2 14.2 116 36-166 6-129 (214)
127 2j69_A Bacterial dynamin-like 99.5 2.6E-14 8.8E-19 141.4 9.9 120 36-166 68-244 (695)
128 1f6b_A SAR1; gtpases, N-termin 99.5 4.8E-14 1.6E-18 118.1 10.1 116 35-165 23-139 (198)
129 3ihw_A Centg3; RAS, centaurin, 99.5 1E-13 3.5E-18 114.7 11.8 113 34-165 17-132 (184)
130 1gwn_A RHO-related GTP-binding 99.5 2.7E-14 9.3E-19 120.5 8.3 118 34-165 25-145 (205)
131 4a9a_A Ribosome-interacting GT 99.5 4.8E-14 1.6E-18 129.3 10.5 117 38-164 73-194 (376)
132 3t1o_A Gliding protein MGLA; G 99.5 3E-14 1E-18 118.1 8.3 120 36-165 13-148 (198)
133 3q3j_B RHO-related GTP-binding 99.5 5.3E-14 1.8E-18 119.4 9.7 118 34-165 24-144 (214)
134 2qtf_A Protein HFLX, GTP-bindi 99.5 2.9E-13 9.8E-18 124.2 14.8 122 38-165 179-305 (364)
135 3cbq_A GTP-binding protein REM 99.5 3.3E-13 1.1E-17 112.8 13.5 122 35-167 21-145 (195)
136 2j0v_A RAC-like GTP-binding pr 99.5 6.4E-14 2.2E-18 118.1 9.1 116 36-165 8-126 (212)
137 2f7s_A C25KG, RAS-related prot 99.5 2.7E-13 9.3E-18 114.6 12.9 120 34-166 22-155 (217)
138 3bwd_D RAC-like GTP-binding pr 99.5 2.3E-14 7.9E-19 117.4 5.9 116 36-165 7-125 (182)
139 2x2e_A Dynamin-1; nitration, h 99.5 2.9E-13 1E-17 123.7 12.9 126 35-167 29-212 (353)
140 3t34_A Dynamin-related protein 99.5 3.1E-13 1.1E-17 123.7 13.1 127 36-169 33-220 (360)
141 1nrj_B SR-beta, signal recogni 99.5 2.8E-13 9.5E-18 114.7 11.5 121 35-166 10-134 (218)
142 3lvq_E ARF-GAP with SH3 domain 99.5 3.6E-13 1.2E-17 128.5 13.6 116 35-165 320-436 (497)
143 2wkq_A NPH1-1, RAS-related C3 99.5 2.6E-13 8.8E-18 122.0 11.5 127 25-165 143-272 (332)
144 2qag_A Septin-2, protein NEDD5 99.4 3.7E-13 1.3E-17 123.4 11.6 144 8-165 16-187 (361)
145 2qpt_A EH domain-containing pr 99.4 2.4E-13 8.2E-18 131.0 10.1 123 36-165 64-231 (550)
146 3zvr_A Dynamin-1; hydrolase, D 99.4 1.1E-12 3.6E-17 129.8 14.8 126 35-168 49-233 (772)
147 1wb1_A Translation elongation 99.4 1.7E-12 5.9E-17 123.3 15.4 117 34-165 16-138 (482)
148 1wxq_A GTP-binding protein; st 99.4 3.6E-13 1.2E-17 124.8 10.1 88 38-129 1-113 (397)
149 3th5_A RAS-related C3 botulinu 99.1 1.6E-14 5.6E-19 121.1 0.0 117 35-165 28-147 (204)
150 2g3y_A GTP-binding protein GEM 99.4 3E-12 1E-16 108.6 13.6 121 35-165 35-158 (211)
151 3p26_A Elongation factor 1 alp 99.4 1.3E-12 4.3E-17 124.3 12.4 119 34-165 30-184 (483)
152 2cjw_A GTP-binding protein GEM 99.4 1.4E-12 4.8E-17 108.6 11.1 119 36-165 5-127 (192)
153 3j2k_7 ERF3, eukaryotic polype 99.4 5E-12 1.7E-16 118.7 16.0 118 35-165 15-168 (439)
154 3sjy_A Translation initiation 99.4 3.4E-12 1.2E-16 118.6 13.4 119 34-165 5-142 (403)
155 2f9l_A RAB11B, member RAS onco 99.4 6.8E-12 2.3E-16 104.8 13.6 116 37-165 5-123 (199)
156 2c78_A Elongation factor TU-A; 99.4 1.6E-12 5.5E-17 120.9 10.8 117 34-165 8-141 (405)
157 2zej_A Dardarin, leucine-rich 99.4 5.6E-13 1.9E-17 110.0 6.5 117 37-165 2-125 (184)
158 3dpu_A RAB family protein; roc 99.4 7.1E-12 2.4E-16 120.6 14.2 118 34-169 38-167 (535)
159 1pui_A ENGB, probable GTP-bind 99.3 9.2E-12 3.1E-16 104.5 12.4 121 36-165 25-150 (210)
160 3izq_1 HBS1P, elongation facto 99.3 3.3E-12 1.1E-16 124.5 11.0 119 34-165 164-318 (611)
161 3tr5_A RF-3, peptide chain rel 99.3 1.9E-12 6.3E-17 124.2 8.3 115 36-165 12-147 (528)
162 2qag_C Septin-7; cell cycle, c 99.3 5E-12 1.7E-16 117.6 10.8 125 35-165 29-180 (418)
163 1zun_B Sulfate adenylate trans 99.3 1.1E-11 3.7E-16 116.3 13.2 116 36-165 23-170 (434)
164 1oix_A RAS-related protein RAB 99.3 3.1E-11 1.1E-15 100.3 14.1 117 36-165 28-147 (191)
165 1d2e_A Elongation factor TU (E 99.3 2.7E-11 9.1E-16 112.4 14.3 115 36-165 2-132 (397)
166 1s0u_A EIF-2-gamma, translatio 99.3 1.3E-10 4.5E-15 108.1 18.8 118 36-166 7-149 (408)
167 3izy_P Translation initiation 99.3 3.1E-13 1.1E-17 129.3 0.4 115 36-166 3-118 (537)
168 1kk1_A EIF2gamma; initiation o 99.3 1.2E-10 4.1E-15 108.4 17.4 118 35-165 8-150 (410)
169 1f60_A Elongation factor EEF1A 99.3 5.2E-12 1.8E-16 119.3 7.1 116 36-165 6-158 (458)
170 2h5e_A Peptide chain release f 99.3 1.6E-11 5.6E-16 117.7 10.6 115 36-165 12-147 (529)
171 1zo1_I IF2, translation initia 99.3 1.8E-12 6.2E-17 123.1 3.7 115 36-166 3-117 (501)
172 3h2y_A GTPase family protein; 99.2 3.5E-13 1.2E-17 123.8 -1.8 139 17-165 141-286 (368)
173 3ec1_A YQEH GTPase; atnos1, at 99.2 3.6E-13 1.2E-17 123.8 -1.9 137 19-165 145-287 (369)
174 3r7w_B Gtpase2, GTP-binding pr 99.2 3.1E-11 1.1E-15 108.4 10.7 119 39-165 1-119 (331)
175 2xex_A Elongation factor G; GT 99.2 3.9E-11 1.3E-15 118.7 12.0 115 36-165 9-140 (693)
176 3sop_A Neuronal-specific septi 99.2 4.3E-11 1.5E-15 105.3 10.5 123 37-165 2-153 (270)
177 1jny_A EF-1-alpha, elongation 99.2 2.6E-11 8.7E-16 113.8 9.4 117 36-165 5-157 (435)
178 2qag_B Septin-6, protein NEDD5 99.2 5.3E-11 1.8E-15 110.6 10.9 125 36-166 41-190 (427)
179 1puj_A YLQF, conserved hypothe 99.2 3.7E-11 1.3E-15 106.3 9.5 67 35-104 118-184 (282)
180 2ywe_A GTP-binding protein LEP 99.2 1.2E-10 3.9E-15 113.0 13.5 114 37-165 6-138 (600)
181 2qnr_A Septin-2, protein NEDD5 99.2 6.2E-11 2.1E-15 105.9 10.3 124 36-165 17-168 (301)
182 3mca_A HBS1, elongation factor 99.2 1.6E-12 5.6E-17 126.3 -0.2 117 36-165 176-328 (592)
183 3cb4_D GTP-binding protein LEP 99.2 6.6E-11 2.2E-15 114.8 10.8 114 37-165 4-136 (599)
184 1g7s_A Translation initiation 99.2 1.1E-10 3.7E-15 113.3 12.1 114 36-165 4-135 (594)
185 1dar_A EF-G, elongation factor 99.2 1.3E-10 4.5E-15 114.9 12.0 115 36-165 11-142 (691)
186 2elf_A Protein translation elo 99.2 1.4E-10 4.8E-15 106.5 11.3 101 39-164 23-125 (370)
187 3avx_A Elongation factor TS, e 99.2 4.8E-10 1.6E-14 114.5 15.8 117 34-165 293-425 (1289)
188 1r5b_A Eukaryotic peptide chai 99.1 4.7E-11 1.6E-15 113.0 7.7 117 35-165 41-194 (467)
189 3p32_A Probable GTPase RV1496/ 99.1 4E-10 1.4E-14 102.9 13.5 126 18-165 60-230 (355)
190 1udx_A The GTP-binding protein 99.1 1.1E-10 3.9E-15 108.5 8.9 120 38-165 158-282 (416)
191 2rdo_7 EF-G, elongation factor 99.1 4.1E-10 1.4E-14 111.5 13.1 115 36-165 9-147 (704)
192 1n0u_A EF-2, elongation factor 99.1 1.4E-10 4.9E-15 116.9 9.6 115 36-165 18-163 (842)
193 1jal_A YCHF protein; nucleotid 99.1 8.6E-11 2.9E-15 107.1 6.9 85 38-129 3-108 (363)
194 2ohf_A Protein OLA1, GTP-bindi 99.0 2E-10 6.9E-15 105.8 4.9 88 34-128 19-127 (396)
195 2www_A Methylmalonic aciduria 99.0 5.7E-10 1.9E-14 101.7 7.8 24 36-59 73-96 (349)
196 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 6.6E-10 2.2E-14 102.4 8.0 87 36-128 19-126 (392)
197 2p67_A LAO/AO transport system 99.0 5.8E-10 2E-14 101.3 7.5 120 24-165 43-207 (341)
198 1f5n_A Interferon-induced guan 99.0 1.3E-09 4.3E-14 105.3 9.9 106 33-145 34-147 (592)
199 3vqt_A RF-3, peptide chain rel 99.0 4.4E-09 1.5E-13 101.2 13.4 115 36-165 30-165 (548)
200 2dby_A GTP-binding protein; GD 99.0 5.2E-10 1.8E-14 102.4 6.0 85 38-129 2-111 (368)
201 3c5h_A Glucocorticoid receptor 99.0 2E-09 6.8E-14 93.7 9.4 27 34-60 16-51 (255)
202 2dy1_A Elongation factor G; tr 99.0 5.9E-09 2E-13 102.6 13.5 115 36-165 8-139 (665)
203 1tq4_A IIGP1, interferon-induc 98.9 1.2E-08 4E-13 94.7 14.4 116 36-164 68-187 (413)
204 3cnl_A YLQF, putative uncharac 98.9 4.2E-10 1.4E-14 98.5 3.6 76 19-100 84-159 (262)
205 2j37_W Signal recognition part 98.9 4E-09 1.4E-13 100.2 9.4 118 36-165 100-253 (504)
206 2qm8_A GTPase/ATPase; G protei 98.8 1.4E-08 4.8E-13 92.0 8.2 35 25-59 43-77 (337)
207 2wsm_A Hydrogenase expression/ 98.7 1.5E-08 5.1E-13 85.5 6.7 46 13-60 8-53 (221)
208 4fn5_A EF-G 1, elongation fact 98.7 1.8E-07 6.2E-12 92.8 13.7 113 38-165 14-150 (709)
209 3szr_A Interferon-induced GTP- 98.7 1.8E-07 6.2E-12 91.1 13.4 40 22-61 26-69 (608)
210 3j25_A Tetracycline resistance 98.6 1.1E-08 3.6E-13 100.4 3.9 113 38-165 3-132 (638)
211 1yrb_A ATP(GTP)binding protein 98.6 3.2E-08 1.1E-12 85.8 5.3 33 34-66 11-48 (262)
212 3dm5_A SRP54, signal recogniti 98.6 1.6E-07 5.3E-12 87.7 10.0 119 36-165 99-252 (443)
213 2v3c_C SRP54, signal recogniti 98.6 3.7E-08 1.3E-12 92.0 5.1 117 37-165 99-251 (432)
214 3kl4_A SRP54, signal recogniti 98.4 6.6E-07 2.3E-11 83.3 8.6 121 36-165 96-251 (433)
215 1zcb_A G alpha I/13; GTP-bindi 98.4 1E-06 3.5E-11 80.3 8.8 79 78-165 194-281 (362)
216 3q5d_A Atlastin-1; G protein, 98.3 1.2E-06 4.2E-11 81.8 8.0 104 36-145 66-195 (447)
217 1cip_A Protein (guanine nucleo 98.3 2.7E-06 9.2E-11 77.3 9.4 80 77-165 185-273 (353)
218 4fid_A G protein alpha subunit 98.3 9.3E-06 3.2E-10 73.2 12.5 81 76-165 152-241 (340)
219 2xxa_A Signal recognition part 98.1 8.7E-06 3E-10 76.0 10.0 119 36-165 99-253 (433)
220 2hf9_A Probable hydrogenase ni 98.1 7.7E-06 2.6E-10 68.8 8.6 25 36-60 37-61 (226)
221 3ohm_A Guanine nucleotide-bind 98.1 2.7E-05 9.3E-10 69.9 12.2 80 76-165 158-247 (327)
222 1j8m_F SRP54, signal recogniti 98.1 1.8E-05 6.1E-10 70.2 10.0 120 37-165 98-252 (297)
223 2yhs_A FTSY, cell division pro 98.0 2E-05 6.7E-10 74.4 8.8 118 37-165 293-451 (503)
224 3e70_C DPA, signal recognition 97.9 1.6E-05 5.6E-10 71.4 7.6 119 36-165 128-281 (328)
225 1t9h_A YLOQ, probable GTPase E 97.9 2.5E-06 8.7E-11 75.9 2.1 58 38-99 174-238 (307)
226 2yv5_A YJEQ protein; hydrolase 97.9 1.5E-05 5E-10 70.9 6.2 57 38-98 166-229 (302)
227 1rj9_A FTSY, signal recognitio 97.9 8.2E-05 2.8E-09 66.1 10.8 119 36-165 101-260 (304)
228 2px0_A Flagellar biosynthesis 97.8 1.9E-05 6.6E-10 69.9 5.2 119 36-165 104-252 (296)
229 1u0l_A Probable GTPase ENGC; p 97.6 3.8E-05 1.3E-09 68.1 4.7 59 38-99 170-235 (301)
230 2rcn_A Probable GTPase ENGC; Y 97.6 2.5E-05 8.4E-10 71.0 3.4 58 38-98 216-281 (358)
231 2ffh_A Protein (FFH); SRP54, s 97.6 4.5E-05 1.5E-09 70.8 4.3 72 83-165 179-250 (425)
232 1vma_A Cell division protein F 97.6 2.3E-05 7.7E-10 69.8 2.1 23 37-59 104-126 (306)
233 4ido_A Atlastin-1; GTPase, GTP 97.5 0.00059 2E-08 63.5 10.9 101 38-145 68-195 (457)
234 1zu4_A FTSY; GTPase, signal re 97.5 0.00022 7.6E-09 63.8 7.6 23 37-59 105-127 (320)
235 2og2_A Putative signal recogni 97.3 0.0009 3.1E-08 60.7 9.6 24 37-60 157-180 (359)
236 3b9q_A Chloroplast SRP recepto 97.3 0.00044 1.5E-08 61.3 6.8 24 37-60 100-123 (302)
237 1ls1_A Signal recognition part 97.3 0.00016 5.4E-09 63.9 3.7 72 83-165 179-250 (295)
238 3ney_A 55 kDa erythrocyte memb 97.2 2.6E-05 9E-10 64.9 -2.1 26 36-61 18-43 (197)
239 3c8u_A Fructokinase; YP_612366 97.0 0.00038 1.3E-08 57.9 3.6 37 25-61 10-46 (208)
240 1ye8_A Protein THEP1, hypothet 96.9 0.00037 1.3E-08 56.8 2.8 24 38-61 1-24 (178)
241 4dzz_A Plasmid partitioning pr 96.9 0.002 6.8E-08 52.9 7.0 68 84-164 75-142 (206)
242 1kgd_A CASK, peripheral plasma 96.9 0.00039 1.3E-08 56.5 2.5 23 38-60 6-28 (180)
243 1lvg_A Guanylate kinase, GMP k 96.9 0.00039 1.3E-08 57.5 2.5 23 38-60 5-27 (198)
244 1azs_C GS-alpha; complex (lyas 96.8 0.0014 4.9E-08 60.2 6.0 80 77-165 209-297 (402)
245 1znw_A Guanylate kinase, GMP k 96.7 0.0006 2E-08 56.7 2.4 24 38-61 21-44 (207)
246 3a00_A Guanylate kinase, GMP k 96.7 0.00068 2.3E-08 55.3 2.4 23 39-61 3-25 (186)
247 3tif_A Uncharacterized ABC tra 96.6 0.00099 3.4E-08 56.8 3.1 24 38-61 32-55 (235)
248 1s96_A Guanylate kinase, GMP k 96.6 0.00079 2.7E-08 56.8 2.5 25 37-61 16-40 (219)
249 3tr0_A Guanylate kinase, GMP k 96.6 0.0008 2.7E-08 55.3 2.5 23 38-60 8-30 (205)
250 1z6g_A Guanylate kinase; struc 96.6 0.00079 2.7E-08 56.6 2.4 24 38-61 24-47 (218)
251 2kjq_A DNAA-related protein; s 96.6 0.0058 2E-07 48.1 7.2 26 36-61 35-60 (149)
252 1fnn_A CDC6P, cell division co 96.6 0.023 7.9E-07 51.1 12.1 22 39-60 46-67 (389)
253 2pcj_A ABC transporter, lipopr 96.5 0.0012 4E-08 55.9 3.1 23 39-61 32-54 (224)
254 1zp6_A Hypothetical protein AT 96.5 0.0017 5.7E-08 52.8 3.8 24 37-60 9-32 (191)
255 4gp7_A Metallophosphoesterase; 96.5 0.0014 4.7E-08 52.8 3.1 23 38-60 10-32 (171)
256 2cbz_A Multidrug resistance-as 96.5 0.0015 5.1E-08 55.7 3.4 24 38-61 32-55 (237)
257 1ex7_A Guanylate kinase; subst 96.5 0.00092 3.2E-08 54.9 1.9 21 40-60 4-24 (186)
258 3gfo_A Cobalt import ATP-bindi 96.5 0.0014 4.9E-08 57.2 3.2 24 38-61 35-58 (275)
259 2eyu_A Twitching motility prot 96.4 0.0013 4.3E-08 57.1 2.7 24 37-60 25-48 (261)
260 1sgw_A Putative ABC transporte 96.4 0.0015 5.3E-08 54.8 3.2 23 39-61 37-59 (214)
261 2qz4_A Paraplegin; AAA+, SPG7, 96.4 0.034 1.2E-06 47.1 11.9 24 36-59 38-61 (262)
262 2onk_A Molybdate/tungstate ABC 96.4 0.0015 5.3E-08 55.8 3.2 24 38-61 25-48 (240)
263 1mv5_A LMRA, multidrug resista 96.4 0.0017 5.7E-08 55.6 3.4 24 38-61 29-52 (243)
264 1b0u_A Histidine permease; ABC 96.4 0.0015 5.2E-08 56.5 3.2 24 38-61 33-56 (262)
265 1g6h_A High-affinity branched- 96.4 0.0015 5.2E-08 56.4 3.1 23 39-61 35-57 (257)
266 2ff7_A Alpha-hemolysin translo 96.4 0.0017 5.7E-08 55.8 3.4 23 39-61 37-59 (247)
267 4g1u_C Hemin import ATP-bindin 96.4 0.0017 5.7E-08 56.5 3.4 24 38-61 38-61 (266)
268 2pze_A Cystic fibrosis transme 96.4 0.0018 6.1E-08 54.9 3.4 23 39-61 36-58 (229)
269 3asz_A Uridine kinase; cytidin 96.4 0.0016 5.6E-08 53.9 2.8 25 36-60 5-29 (211)
270 2ghi_A Transport protein; mult 96.3 0.002 6.8E-08 55.8 3.4 24 38-61 47-70 (260)
271 2d2e_A SUFC protein; ABC-ATPas 96.3 0.002 6.9E-08 55.3 3.4 22 39-60 31-52 (250)
272 3tlx_A Adenylate kinase 2; str 96.3 0.0046 1.6E-07 52.7 5.6 38 21-58 13-50 (243)
273 2qi9_C Vitamin B12 import ATP- 96.3 0.002 7E-08 55.3 3.4 24 39-62 28-51 (249)
274 2olj_A Amino acid ABC transpor 96.3 0.0021 7E-08 55.8 3.4 24 38-61 51-74 (263)
275 1htw_A HI0065; nucleotide-bind 96.3 0.0016 5.3E-08 52.0 2.4 25 37-61 33-57 (158)
276 1ji0_A ABC transporter; ATP bi 96.3 0.002 7E-08 54.9 3.4 23 39-61 34-56 (240)
277 3tau_A Guanylate kinase, GMP k 96.3 0.002 6.9E-08 53.5 3.2 26 36-61 7-32 (208)
278 2zu0_C Probable ATP-dependent 96.3 0.0021 7.3E-08 55.8 3.4 22 39-60 48-69 (267)
279 1vpl_A ABC transporter, ATP-bi 96.3 0.0021 7.2E-08 55.5 3.4 24 38-61 42-65 (256)
280 2ixe_A Antigen peptide transpo 96.3 0.0021 7.3E-08 55.9 3.4 23 39-61 47-69 (271)
281 3h4m_A Proteasome-activating n 96.3 0.034 1.2E-06 48.0 11.1 25 36-60 50-74 (285)
282 1odf_A YGR205W, hypothetical 3 96.3 0.0036 1.2E-07 55.0 4.8 28 33-60 27-54 (290)
283 2v9p_A Replication protein E1; 96.3 0.0042 1.4E-07 55.0 5.2 34 27-60 116-149 (305)
284 2j41_A Guanylate kinase; GMP, 96.3 0.0022 7.6E-08 52.6 3.2 25 37-61 6-30 (207)
285 2ihy_A ABC transporter, ATP-bi 96.3 0.0023 7.7E-08 56.0 3.4 23 39-61 49-71 (279)
286 3jvv_A Twitching mobility prot 96.3 0.0025 8.5E-08 57.8 3.8 22 39-60 125-146 (356)
287 3n70_A Transport activator; si 96.3 0.0047 1.6E-07 48.1 4.9 37 24-60 11-47 (145)
288 1rz3_A Hypothetical protein rb 96.3 0.0047 1.6E-07 50.9 5.1 37 23-59 7-44 (201)
289 2nq2_C Hypothetical ABC transp 96.3 0.0024 8.1E-08 55.0 3.4 23 39-61 33-55 (253)
290 2xtz_A Guanine nucleotide-bind 96.3 0.0053 1.8E-07 55.5 5.8 72 84-165 182-263 (354)
291 2yz2_A Putative ABC transporte 96.2 0.0024 8.2E-08 55.4 3.4 24 38-61 34-57 (266)
292 3tqc_A Pantothenate kinase; bi 96.2 0.0052 1.8E-07 54.8 5.6 27 34-60 89-115 (321)
293 2chg_A Replication factor C sm 96.2 0.02 6.8E-07 46.8 8.8 22 39-60 40-61 (226)
294 3nh6_A ATP-binding cassette SU 96.2 0.0017 5.7E-08 57.7 2.2 24 38-61 81-104 (306)
295 2bbw_A Adenylate kinase 4, AK4 96.2 0.0033 1.1E-07 53.5 3.7 26 36-61 26-54 (246)
296 2gza_A Type IV secretion syste 96.2 0.0024 8.2E-08 57.9 3.0 25 37-61 175-199 (361)
297 2pjz_A Hypothetical protein ST 96.1 0.003 1E-07 54.7 3.4 23 39-61 32-54 (263)
298 2qor_A Guanylate kinase; phosp 96.1 0.0029 1E-07 52.2 3.1 25 36-60 11-35 (204)
299 2i3b_A HCR-ntpase, human cance 96.1 0.0022 7.5E-08 52.7 2.3 23 39-61 3-25 (189)
300 3b85_A Phosphate starvation-in 96.1 0.0018 6E-08 54.2 1.7 22 39-60 24-45 (208)
301 2bdt_A BH3686; alpha-beta prot 96.1 0.0024 8.1E-08 51.9 2.4 21 39-59 4-24 (189)
302 1gvn_B Zeta; postsegregational 96.1 0.0058 2E-07 53.5 4.9 41 19-59 12-55 (287)
303 2oap_1 GSPE-2, type II secreti 96.1 0.0027 9.1E-08 60.4 2.9 24 38-61 261-284 (511)
304 2pt7_A CAG-ALFA; ATPase, prote 96.1 0.0026 8.8E-08 57.0 2.7 24 38-61 172-195 (330)
305 3lnc_A Guanylate kinase, GMP k 96.0 0.002 6.7E-08 54.4 1.7 24 38-61 28-52 (231)
306 3qf7_A RAD50; ABC-ATPase, ATPa 96.0 0.017 6E-07 52.3 8.2 21 37-58 24-44 (365)
307 1knq_A Gluconate kinase; ALFA/ 96.0 0.0035 1.2E-07 50.2 3.1 24 36-59 7-30 (175)
308 2bbs_A Cystic fibrosis transme 96.0 0.0034 1.2E-07 55.2 3.3 23 39-61 66-88 (290)
309 2f1r_A Molybdopterin-guanine d 96.0 0.0015 5.2E-08 52.8 0.7 23 39-61 4-26 (171)
310 3lw7_A Adenylate kinase relate 96.0 0.004 1.4E-07 49.2 3.2 20 38-57 2-21 (179)
311 3ec2_A DNA replication protein 96.0 0.0062 2.1E-07 49.0 4.4 25 37-61 38-62 (180)
312 4eun_A Thermoresistant glucoki 96.0 0.0037 1.3E-07 51.5 3.0 25 36-60 28-52 (200)
313 3uie_A Adenylyl-sulfate kinase 96.0 0.0052 1.8E-07 50.5 3.9 25 36-60 24-48 (200)
314 1jbk_A CLPB protein; beta barr 96.0 0.0094 3.2E-07 47.5 5.4 38 21-60 29-66 (195)
315 1kag_A SKI, shikimate kinase I 95.9 0.0032 1.1E-07 50.2 2.5 23 38-60 5-27 (173)
316 3aez_A Pantothenate kinase; tr 95.9 0.0037 1.3E-07 55.5 3.1 27 35-61 88-114 (312)
317 2ewv_A Twitching motility prot 95.9 0.0031 1.1E-07 57.4 2.6 24 37-60 136-159 (372)
318 1ly1_A Polynucleotide kinase; 95.9 0.0046 1.6E-07 49.4 3.4 22 38-59 3-24 (181)
319 1p9r_A General secretion pathw 95.9 0.0029 1E-07 58.6 2.4 23 38-60 168-190 (418)
320 3tui_C Methionine import ATP-b 95.9 0.004 1.4E-07 56.5 3.2 24 39-62 56-79 (366)
321 3fvq_A Fe(3+) IONS import ATP- 95.9 0.0041 1.4E-07 56.3 3.1 24 39-62 32-55 (359)
322 1np6_A Molybdopterin-guanine d 95.8 0.0037 1.3E-07 50.7 2.5 23 38-60 7-29 (174)
323 1qhx_A CPT, protein (chloramph 95.8 0.0058 2E-07 48.9 3.7 23 37-59 3-25 (178)
324 1cke_A CK, MSSA, protein (cyti 95.8 0.0044 1.5E-07 51.7 2.9 23 37-59 5-27 (227)
325 1kht_A Adenylate kinase; phosp 95.8 0.0054 1.8E-07 49.5 3.3 23 37-59 3-25 (192)
326 1z47_A CYSA, putative ABC-tran 95.8 0.0047 1.6E-07 55.9 3.2 24 39-62 43-66 (355)
327 3rlf_A Maltose/maltodextrin im 95.8 0.0049 1.7E-07 56.2 3.2 24 39-62 31-54 (381)
328 4a74_A DNA repair and recombin 95.8 0.0038 1.3E-07 52.0 2.4 23 38-60 26-48 (231)
329 4b4t_L 26S protease subunit RP 95.8 0.049 1.7E-06 50.5 10.0 70 36-129 214-285 (437)
330 2jeo_A Uridine-cytidine kinase 95.8 0.005 1.7E-07 52.4 3.1 25 36-60 24-48 (245)
331 3kb2_A SPBC2 prophage-derived 95.7 0.0055 1.9E-07 48.5 3.1 21 39-59 3-23 (173)
332 1xwi_A SKD1 protein; VPS4B, AA 95.7 0.15 5E-06 45.2 12.8 24 37-60 45-68 (322)
333 2it1_A 362AA long hypothetical 95.7 0.0053 1.8E-07 55.7 3.2 24 38-61 30-53 (362)
334 3end_A Light-independent proto 95.7 0.029 1E-06 49.1 8.0 69 84-164 156-225 (307)
335 2yyz_A Sugar ABC transporter, 95.7 0.0052 1.8E-07 55.7 3.2 23 39-61 31-53 (359)
336 2qt1_A Nicotinamide riboside k 95.7 0.0073 2.5E-07 49.8 3.8 27 34-60 18-44 (207)
337 3b9p_A CG5977-PA, isoform A; A 95.7 0.13 4.6E-06 44.4 12.1 25 36-60 53-77 (297)
338 1uf9_A TT1252 protein; P-loop, 95.7 0.0069 2.4E-07 49.4 3.5 26 35-60 6-31 (203)
339 2p5t_B PEZT; postsegregational 95.7 0.01 3.5E-07 50.8 4.7 26 34-59 29-54 (253)
340 3co5_A Putative two-component 95.7 0.0062 2.1E-07 47.3 3.0 25 36-60 26-50 (143)
341 1g29_1 MALK, maltose transport 95.6 0.0057 1.9E-07 55.7 3.2 24 39-62 31-54 (372)
342 1tev_A UMP-CMP kinase; ploop, 95.6 0.0067 2.3E-07 49.0 3.4 23 36-58 2-24 (196)
343 1lw7_A Transcriptional regulat 95.6 0.0042 1.4E-07 56.3 2.2 25 37-61 170-194 (365)
344 3fb4_A Adenylate kinase; psych 95.6 0.0065 2.2E-07 50.3 3.2 21 38-58 1-21 (216)
345 1v43_A Sugar-binding transport 95.6 0.006 2.1E-07 55.5 3.2 24 38-61 38-61 (372)
346 2if2_A Dephospho-COA kinase; a 95.6 0.0054 1.8E-07 50.4 2.7 22 38-59 2-23 (204)
347 2ehv_A Hypothetical protein PH 95.6 0.0061 2.1E-07 51.4 3.1 21 38-58 31-51 (251)
348 2rhm_A Putative kinase; P-loop 95.6 0.0075 2.6E-07 48.8 3.5 23 36-58 4-26 (193)
349 1svm_A Large T antigen; AAA+ f 95.6 0.014 4.8E-07 53.2 5.6 37 24-60 156-192 (377)
350 1jjv_A Dephospho-COA kinase; P 95.6 0.0073 2.5E-07 49.7 3.4 22 38-59 3-24 (206)
351 3cm0_A Adenylate kinase; ATP-b 95.5 0.0075 2.6E-07 48.6 3.3 22 37-58 4-25 (186)
352 3t61_A Gluconokinase; PSI-biol 95.5 0.0066 2.2E-07 49.8 2.9 23 37-59 18-40 (202)
353 1y63_A LMAJ004144AAA protein; 95.5 0.0087 3E-07 48.5 3.6 25 36-60 9-33 (184)
354 3dl0_A Adenylate kinase; phosp 95.5 0.0076 2.6E-07 50.0 3.2 21 38-58 1-21 (216)
355 2cdn_A Adenylate kinase; phosp 95.5 0.0095 3.3E-07 48.8 3.7 25 34-58 17-41 (201)
356 1sq5_A Pantothenate kinase; P- 95.5 0.0072 2.5E-07 53.4 3.2 26 35-60 78-103 (308)
357 3d31_A Sulfate/molybdate ABC t 95.5 0.0049 1.7E-07 55.6 2.1 23 39-61 28-50 (348)
358 3gd7_A Fusion complex of cysti 95.5 0.0069 2.4E-07 55.5 3.1 23 39-61 49-71 (390)
359 3vaa_A Shikimate kinase, SK; s 95.5 0.0082 2.8E-07 49.3 3.2 23 37-59 25-47 (199)
360 2p65_A Hypothetical protein PF 95.5 0.013 4.5E-07 46.6 4.4 37 22-60 30-66 (187)
361 3kta_A Chromosome segregation 95.5 0.0076 2.6E-07 48.5 3.0 21 39-59 28-48 (182)
362 2jaq_A Deoxyguanosine kinase; 95.4 0.0083 2.8E-07 48.9 3.2 21 39-59 2-22 (205)
363 1aky_A Adenylate kinase; ATP:A 95.4 0.0092 3.1E-07 49.7 3.5 23 36-58 3-25 (220)
364 2plr_A DTMP kinase, probable t 95.4 0.0098 3.4E-07 48.8 3.7 24 36-59 3-26 (213)
365 4e22_A Cytidylate kinase; P-lo 95.4 0.01 3.5E-07 50.8 3.8 26 36-61 26-54 (252)
366 4b4t_I 26S protease regulatory 95.4 0.089 3E-06 48.6 10.1 25 36-60 215-239 (437)
367 1in4_A RUVB, holliday junction 95.3 0.016 5.3E-07 51.8 4.9 24 37-60 51-74 (334)
368 3trf_A Shikimate kinase, SK; a 95.3 0.0099 3.4E-07 47.9 3.3 22 37-58 5-26 (185)
369 1nks_A Adenylate kinase; therm 95.3 0.0095 3.2E-07 48.0 3.1 21 39-59 3-23 (194)
370 1lv7_A FTSH; alpha/beta domain 95.3 0.017 5.9E-07 49.2 4.9 24 37-60 45-68 (257)
371 2v54_A DTMP kinase, thymidylat 95.3 0.012 4.1E-07 48.1 3.7 25 36-60 3-27 (204)
372 1oxx_K GLCV, glucose, ABC tran 95.3 0.0048 1.6E-07 55.8 1.3 24 39-62 33-56 (353)
373 3u61_B DNA polymerase accessor 95.3 0.25 8.7E-06 43.3 12.7 23 38-60 49-71 (324)
374 3bos_A Putative DNA replicatio 95.3 0.021 7.1E-07 47.5 5.2 38 22-60 38-75 (242)
375 2c95_A Adenylate kinase 1; tra 95.3 0.011 3.9E-07 47.8 3.5 23 36-58 8-30 (196)
376 2wwf_A Thymidilate kinase, put 95.2 0.0095 3.3E-07 49.0 3.0 24 36-59 9-32 (212)
377 4b4t_J 26S protease regulatory 95.2 0.11 3.8E-06 47.6 10.2 25 36-60 181-205 (405)
378 4b4t_K 26S protease regulatory 95.2 0.066 2.2E-06 49.6 8.8 24 37-60 206-229 (428)
379 2vp4_A Deoxynucleoside kinase; 95.2 0.0091 3.1E-07 50.3 2.8 26 35-60 18-43 (230)
380 1zd8_A GTP:AMP phosphotransfer 95.2 0.011 3.8E-07 49.5 3.3 23 36-58 6-28 (227)
381 2w58_A DNAI, primosome compone 95.2 0.027 9.3E-07 46.0 5.6 23 38-60 55-77 (202)
382 3pfi_A Holliday junction ATP-d 95.2 0.025 8.6E-07 50.1 5.8 40 21-60 39-78 (338)
383 2pt5_A Shikimate kinase, SK; a 95.2 0.012 4.1E-07 46.5 3.2 22 38-59 1-22 (168)
384 1ixz_A ATP-dependent metallopr 95.2 0.0085 2.9E-07 51.0 2.5 22 39-60 51-72 (254)
385 1nn5_A Similar to deoxythymidy 95.2 0.013 4.4E-07 48.3 3.5 24 36-59 8-31 (215)
386 1zak_A Adenylate kinase; ATP:A 95.2 0.011 3.7E-07 49.3 3.1 23 36-58 4-26 (222)
387 3iij_A Coilin-interacting nucl 95.2 0.012 4E-07 47.3 3.2 23 36-58 10-32 (180)
388 2pez_A Bifunctional 3'-phospho 95.1 0.013 4.6E-07 46.9 3.5 24 36-59 4-27 (179)
389 1e4v_A Adenylate kinase; trans 95.1 0.011 3.9E-07 48.9 3.1 21 38-58 1-21 (214)
390 1yqt_A RNAse L inhibitor; ATP- 95.1 0.011 3.9E-07 56.4 3.4 24 38-61 48-71 (538)
391 2x8a_A Nuclear valosin-contain 95.1 0.0087 3E-07 52.0 2.4 22 39-60 46-67 (274)
392 2yvu_A Probable adenylyl-sulfa 95.1 0.015 5.3E-07 46.9 3.7 26 35-60 11-36 (186)
393 3b60_A Lipid A export ATP-bind 95.0 0.012 4E-07 56.8 3.3 23 39-61 371-393 (582)
394 1ukz_A Uridylate kinase; trans 95.0 0.016 5.5E-07 47.4 3.7 23 36-58 14-36 (203)
395 1f2t_A RAD50 ABC-ATPase; DNA d 95.0 0.012 4.3E-07 46.1 2.8 20 39-58 25-44 (149)
396 1vht_A Dephospho-COA kinase; s 95.0 0.016 5.4E-07 48.1 3.6 24 36-59 3-26 (218)
397 2bjv_A PSP operon transcriptio 95.0 0.024 8.2E-07 48.5 4.9 25 36-60 28-52 (265)
398 3b5x_A Lipid A export ATP-bind 95.0 0.012 4.3E-07 56.6 3.3 24 38-61 370-393 (582)
399 2vli_A Antibiotic resistance p 95.0 0.0095 3.2E-07 47.8 2.1 23 36-58 4-26 (183)
400 3ozx_A RNAse L inhibitor; ATP 95.0 0.012 4.2E-07 56.1 3.2 25 38-62 26-50 (538)
401 2npi_A Protein CLP1; CLP1-PCF1 94.9 0.0089 3.1E-07 56.0 2.2 26 36-61 137-162 (460)
402 1nij_A Hypothetical protein YJ 94.9 0.0076 2.6E-07 53.6 1.5 23 39-61 6-28 (318)
403 2ze6_A Isopentenyl transferase 94.9 0.013 4.5E-07 50.2 3.0 21 39-59 3-23 (253)
404 3r20_A Cytidylate kinase; stru 94.9 0.016 5.4E-07 49.2 3.4 23 36-58 8-30 (233)
405 1via_A Shikimate kinase; struc 94.9 0.013 4.6E-07 46.7 2.8 21 39-59 6-26 (175)
406 1njg_A DNA polymerase III subu 94.9 0.027 9.4E-07 46.5 4.8 24 37-60 45-68 (250)
407 2bwj_A Adenylate kinase 5; pho 94.9 0.016 5.5E-07 47.0 3.3 23 37-59 12-34 (199)
408 2zan_A Vacuolar protein sortin 94.9 0.21 7.2E-06 46.3 11.3 25 36-60 166-190 (444)
409 2w0m_A SSO2452; RECA, SSPF, un 94.8 0.012 4.1E-07 48.9 2.4 23 38-60 24-46 (235)
410 3hr8_A Protein RECA; alpha and 94.8 0.22 7.6E-06 44.8 10.9 23 38-60 62-84 (356)
411 2pbr_A DTMP kinase, thymidylat 94.8 0.017 5.6E-07 46.7 3.2 21 39-59 2-22 (195)
412 3be4_A Adenylate kinase; malar 94.8 0.014 4.9E-07 48.5 2.8 23 36-58 4-26 (217)
413 2xb4_A Adenylate kinase; ATP-b 94.8 0.017 5.9E-07 48.3 3.2 21 38-58 1-21 (223)
414 1iy2_A ATP-dependent metallopr 94.8 0.013 4.4E-07 50.8 2.5 22 39-60 75-96 (278)
415 3uk6_A RUVB-like 2; hexameric 94.7 0.043 1.5E-06 49.1 6.1 39 22-60 55-93 (368)
416 1xjc_A MOBB protein homolog; s 94.7 0.02 7E-07 46.0 3.4 24 37-60 4-27 (169)
417 2z0h_A DTMP kinase, thymidylat 94.7 0.018 6.2E-07 46.6 3.2 21 39-59 2-22 (197)
418 4a82_A Cystic fibrosis transme 94.7 0.01 3.6E-07 57.1 2.0 23 39-61 369-391 (578)
419 1ak2_A Adenylate kinase isoenz 94.7 0.021 7.1E-07 48.1 3.7 23 36-58 15-37 (233)
420 3euj_A Chromosome partition pr 94.7 0.013 4.4E-07 55.2 2.5 23 38-60 30-52 (483)
421 3qf4_B Uncharacterized ABC tra 94.7 0.012 4.1E-07 57.0 2.4 24 38-61 382-405 (598)
422 3bk7_A ABC transporter ATP-bin 94.7 0.017 5.8E-07 56.0 3.4 25 38-62 118-142 (607)
423 1qf9_A UMP/CMP kinase, protein 94.7 0.019 6.4E-07 46.2 3.2 22 37-58 6-27 (194)
424 3j16_B RLI1P; ribosome recycli 94.7 0.022 7.7E-07 55.1 4.2 25 38-62 104-128 (608)
425 2yl4_A ATP-binding cassette SU 94.7 0.012 4E-07 57.0 2.2 23 39-61 372-394 (595)
426 3vfd_A Spastin; ATPase, microt 94.7 0.23 7.9E-06 45.0 10.9 25 36-60 147-171 (389)
427 3qf4_A ABC transporter, ATP-bi 94.7 0.013 4.3E-07 56.7 2.5 23 39-61 371-393 (587)
428 1hqc_A RUVB; extended AAA-ATPa 94.6 0.025 8.7E-07 49.6 4.2 40 20-59 21-60 (324)
429 2iyv_A Shikimate kinase, SK; t 94.6 0.017 5.8E-07 46.5 2.7 21 38-58 3-23 (184)
430 2obl_A ESCN; ATPase, hydrolase 94.6 0.015 5.1E-07 52.4 2.6 25 37-61 71-95 (347)
431 3a4m_A L-seryl-tRNA(SEC) kinas 94.6 0.021 7.2E-07 49.0 3.5 23 37-59 4-26 (260)
432 3sr0_A Adenylate kinase; phosp 94.6 0.02 6.8E-07 47.6 3.2 22 38-59 1-22 (206)
433 3cwq_A Para family chromosome 94.6 0.037 1.3E-06 45.8 4.9 65 84-164 67-132 (209)
434 1sxj_E Activator 1 40 kDa subu 94.6 0.018 6E-07 51.4 3.0 20 40-59 39-58 (354)
435 3syl_A Protein CBBX; photosynt 94.6 0.051 1.7E-06 47.4 6.0 26 35-60 65-90 (309)
436 1e6c_A Shikimate kinase; phosp 94.5 0.02 6.9E-07 45.3 3.0 21 38-58 3-23 (173)
437 1uj2_A Uridine-cytidine kinase 94.5 0.022 7.6E-07 48.5 3.4 24 36-59 21-44 (252)
438 1u0l_A Probable GTPase ENGC; p 94.5 0.053 1.8E-06 47.6 5.9 64 86-165 64-128 (301)
439 2f6r_A COA synthase, bifunctio 94.5 0.024 8.2E-07 49.4 3.6 23 36-58 74-96 (281)
440 1gtv_A TMK, thymidylate kinase 94.5 0.0093 3.2E-07 49.1 0.9 22 39-60 2-23 (214)
441 3ozx_A RNAse L inhibitor; ATP 94.5 0.021 7E-07 54.6 3.4 24 39-62 296-319 (538)
442 1cr0_A DNA primase/helicase; R 94.4 0.016 5.5E-07 50.6 2.4 23 38-60 36-58 (296)
443 2qby_A CDC6 homolog 1, cell di 94.4 0.029 1E-06 50.1 4.1 40 21-60 27-68 (386)
444 4b4t_H 26S protease regulatory 94.4 0.29 9.9E-06 45.6 10.8 25 36-60 242-266 (467)
445 1zuh_A Shikimate kinase; alpha 94.4 0.025 8.6E-07 44.7 3.2 21 38-58 8-28 (168)
446 1ojl_A Transcriptional regulat 94.4 0.041 1.4E-06 48.4 4.9 35 25-59 13-47 (304)
447 1yqt_A RNAse L inhibitor; ATP- 94.3 0.031 1.1E-06 53.3 4.3 24 39-62 314-337 (538)
448 3upu_A ATP-dependent DNA helic 94.3 0.066 2.3E-06 49.9 6.4 46 10-58 21-66 (459)
449 2c9o_A RUVB-like 1; hexameric 94.3 0.064 2.2E-06 50.0 6.2 41 19-59 45-85 (456)
450 2cvh_A DNA repair and recombin 94.2 0.02 6.8E-07 47.2 2.4 22 38-59 21-42 (220)
451 2qby_B CDC6 homolog 3, cell di 94.2 0.068 2.3E-06 47.9 6.2 38 22-60 31-68 (384)
452 1tue_A Replication protein E1; 94.2 0.047 1.6E-06 45.4 4.6 22 38-59 59-80 (212)
453 4f4c_A Multidrug resistance pr 94.2 0.013 4.6E-07 61.8 1.6 23 39-61 1107-1129(1321)
454 1m7g_A Adenylylsulfate kinase; 94.2 0.031 1.1E-06 46.2 3.5 25 36-60 24-48 (211)
455 2dpy_A FLII, flagellum-specifi 94.1 0.021 7.3E-07 53.1 2.6 26 36-61 156-181 (438)
456 1d2n_A N-ethylmaleimide-sensit 94.1 0.065 2.2E-06 46.0 5.6 27 34-60 61-87 (272)
457 2v1u_A Cell division control p 94.1 0.045 1.5E-06 49.0 4.7 40 21-60 26-67 (387)
458 3bk7_A ABC transporter ATP-bin 94.1 0.036 1.2E-06 53.7 4.3 24 39-62 384-407 (607)
459 2grj_A Dephospho-COA kinase; T 94.1 0.032 1.1E-06 45.8 3.4 25 35-59 10-34 (192)
460 3te6_A Regulatory protein SIR3 94.1 0.049 1.7E-06 48.4 4.8 27 34-60 42-68 (318)
461 3nwj_A ATSK2; P loop, shikimat 94.1 0.025 8.5E-07 48.5 2.7 23 37-59 48-70 (250)
462 1n0w_A DNA repair protein RAD5 94.0 0.024 8.2E-07 47.5 2.5 23 38-60 25-47 (243)
463 3exa_A TRNA delta(2)-isopenten 94.0 0.034 1.1E-06 49.3 3.5 24 37-60 3-26 (322)
464 2qmh_A HPR kinase/phosphorylas 93.9 0.03 1E-06 46.3 2.8 24 37-60 34-57 (205)
465 3eie_A Vacuolar protein sortin 93.9 0.048 1.6E-06 48.2 4.4 25 36-60 50-74 (322)
466 3j16_B RLI1P; ribosome recycli 93.9 0.032 1.1E-06 54.0 3.4 23 40-62 381-403 (608)
467 3qks_A DNA double-strand break 93.8 0.031 1.1E-06 46.2 2.8 20 39-58 25-44 (203)
468 1ltq_A Polynucleotide kinase; 93.8 0.035 1.2E-06 48.3 3.4 22 38-59 3-24 (301)
469 1sxj_C Activator 1 40 kDa subu 93.8 0.049 1.7E-06 48.5 4.2 22 39-60 48-69 (340)
470 3a8t_A Adenylate isopentenyltr 93.7 0.046 1.6E-06 48.9 3.9 24 37-60 40-63 (339)
471 3ake_A Cytidylate kinase; CMP 93.7 0.045 1.5E-06 44.6 3.6 21 39-59 4-24 (208)
472 3cf0_A Transitional endoplasmi 93.7 0.1 3.4E-06 45.7 6.1 25 36-60 48-72 (301)
473 4f4c_A Multidrug resistance pr 93.7 0.032 1.1E-06 59.0 3.2 24 38-61 445-468 (1321)
474 4eaq_A DTMP kinase, thymidylat 93.6 0.048 1.6E-06 45.9 3.6 25 36-60 25-49 (229)
475 4fcw_A Chaperone protein CLPB; 93.5 0.079 2.7E-06 46.1 5.0 23 38-60 48-70 (311)
476 1q3t_A Cytidylate kinase; nucl 93.5 0.051 1.7E-06 45.7 3.6 24 36-59 15-38 (236)
477 1l8q_A Chromosomal replication 93.4 0.083 2.8E-06 46.6 5.1 25 36-60 36-60 (324)
478 3crm_A TRNA delta(2)-isopenten 93.4 0.046 1.6E-06 48.7 3.3 23 38-60 6-28 (323)
479 3la6_A Tyrosine-protein kinase 93.4 2 6.7E-05 37.2 13.9 64 86-164 203-266 (286)
480 1qhl_A Protein (cell division 93.4 0.01 3.5E-07 50.2 -0.9 22 40-61 30-51 (227)
481 2iw3_A Elongation factor 3A; a 93.4 0.026 8.8E-07 57.5 1.9 23 39-61 701-723 (986)
482 3g5u_A MCG1178, multidrug resi 93.4 0.036 1.2E-06 58.4 3.0 23 39-61 418-440 (1284)
483 3foz_A TRNA delta(2)-isopenten 93.4 0.055 1.9E-06 47.8 3.7 24 37-60 10-33 (316)
484 3umf_A Adenylate kinase; rossm 93.3 0.06 2.1E-06 45.1 3.7 23 37-59 29-51 (217)
485 3t15_A Ribulose bisphosphate c 93.3 0.054 1.8E-06 47.4 3.5 25 36-60 35-59 (293)
486 2h92_A Cytidylate kinase; ross 93.3 0.045 1.5E-06 45.2 2.9 23 37-59 3-25 (219)
487 3cr8_A Sulfate adenylyltranfer 93.2 0.037 1.3E-06 53.0 2.5 26 36-61 368-393 (552)
488 1nlf_A Regulatory protein REPA 93.1 0.038 1.3E-06 47.8 2.4 22 38-59 31-52 (279)
489 3d3q_A TRNA delta(2)-isopenten 93.1 0.047 1.6E-06 48.9 3.0 22 38-59 8-29 (340)
490 1azs_C GS-alpha; complex (lyas 93.1 0.054 1.9E-06 49.7 3.4 37 21-57 24-60 (402)
491 1ofh_A ATP-dependent HSL prote 93.1 0.085 2.9E-06 45.7 4.6 24 36-59 49-72 (310)
492 4aby_A DNA repair protein RECN 93.0 0.015 5.1E-07 53.3 -0.5 20 39-58 62-81 (415)
493 3pxg_A Negative regulator of g 93.0 0.092 3.2E-06 49.1 4.9 37 22-60 188-224 (468)
494 2ce7_A Cell division protein F 92.9 0.12 4E-06 48.6 5.5 42 19-60 24-72 (476)
495 2r62_A Cell division protease 92.9 0.056 1.9E-06 46.1 3.1 24 37-60 44-67 (268)
496 2qgz_A Helicase loader, putati 92.9 0.18 6E-06 44.4 6.3 24 37-60 152-175 (308)
497 3qkt_A DNA double-strand break 92.8 0.051 1.8E-06 48.5 2.8 21 37-58 24-44 (339)
498 2iw3_A Elongation factor 3A; a 92.8 0.05 1.7E-06 55.4 3.0 23 39-61 463-485 (986)
499 2ius_A DNA translocase FTSK; n 92.8 0.048 1.7E-06 51.6 2.7 22 38-59 168-189 (512)
500 4ag6_A VIRB4 ATPase, type IV s 92.8 0.052 1.8E-06 49.4 2.9 25 36-60 34-58 (392)
No 1
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=100.00 E-value=1.6e-37 Score=275.05 Aligned_cols=263 Identities=66% Similarity=1.044 Sum_probs=225.4
Q ss_pred Cccc--ccchhccccCCchhhHHHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEE
Q 022358 1 MGSL--LLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV 78 (298)
Q Consensus 1 ~~~~--~~~~~~~~~~l~~~~~~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~ 78 (298)
||++ +.++|.|+..++...++.+.+++.++...+...++|+++|.+|+|||||+|+|++.....++..+++|.....+
T Consensus 1 m~~~~~~~~~~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~ 80 (270)
T 1h65_A 1 MASQQQTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMV 80 (270)
T ss_dssp -------CEECGGGGGSCHHHHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEE
T ss_pred CCcchhhhhhhcchhhccHHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEE
Confidence 8887 78999999999999999999999999988878899999999999999999999999876677777777777777
Q ss_pred EEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEE
Q 022358 79 SRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLV 158 (298)
Q Consensus 79 ~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV 158 (298)
.....+..+.+|||||+.+.......+.+.+..++...++|++|||++++..+++..+..+++.+.+.++.+.+.|+++|
T Consensus 81 ~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV 160 (270)
T 1h65_A 81 SRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVA 160 (270)
T ss_dssp EEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred EEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEE
Confidence 78889999999999999887766667777777766667899999999998867888888999999999988778899999
Q ss_pred EeCcCCCCCCCCChHHHhhhccHHHHHHHHhhcCCCcccccccCchHHhhhcCCccccCCCCcccCCCCCCchHHHHHHH
Q 022358 159 LTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGI 238 (298)
Q Consensus 159 ~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~lp~~~~W~~~L~~~~ 238 (298)
+||+|+.++++..++++.++..+.+++.+++..++... .+...+|++++++.+.|+++..+++.+|....|.+.|++.+
T Consensus 161 ~nK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l 239 (270)
T 1h65_A 161 LTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKD-AQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTI 239 (270)
T ss_dssp EECCSCCCGGGCCHHHHHHHHHHHHHHHHHHHTTCCTT-SGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHH
T ss_pred EECcccCCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhh-hhhccCCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHH
Confidence 99999987777789999988778888888776665432 22445899999999999999999999999999999999999
Q ss_pred HHHHhcCCCcccchhhhccCCCCCCC
Q 022358 239 TDVATNKSKSIVVDKKLIDGSGSDDK 264 (298)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (298)
.+.+..+++.+++|+.+++++.+...
T Consensus 240 ~~~~~~~~~~l~~d~~~~~~~~~~~~ 265 (270)
T 1h65_A 240 TEVALNKSESIFVDKNLIDKLAAADH 265 (270)
T ss_dssp HHHHTSSSCCEECCHHHHHHHHHCC-
T ss_pred HHHHhcCCCceecCHHHhcCCCcccc
Confidence 99999999999999999988776554
No 2
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=100.00 E-value=7.9e-37 Score=269.47 Aligned_cols=256 Identities=70% Similarity=1.121 Sum_probs=217.0
Q ss_pred CcccccchhccccCCchhhHHHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEE
Q 022358 1 MGSLLLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSR 80 (298)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~ 80 (298)
|++ +.++|.+++.++...++.+.+.++++.....++++|+++|.+|+|||||+|+|++.....++..+++|.....+..
T Consensus 1 ~~~-~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~ 79 (262)
T 3def_A 1 MGS-LVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR 79 (262)
T ss_dssp ------CBCHHHHTSCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEE
T ss_pred CCc-chhhHHHHhhccHHHHHHHHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEE
Confidence 555 4699999999999999999999999999888899999999999999999999999987677777787888888888
Q ss_pred EECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEe
Q 022358 81 SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT 160 (298)
Q Consensus 81 ~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~t 160 (298)
.+++..+.+|||||+.+.....+.+.+.+.+++...++|+++||+++|..+++..+..+++.+.+.++...+.|+++|+|
T Consensus 80 ~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~n 159 (262)
T 3def_A 80 TMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLT 159 (262)
T ss_dssp EETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred EECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEe
Confidence 89999999999999998887777888888888877899999999999987788888899999999999887789999999
Q ss_pred CcCCCCCCCCChHHHhhhccHHHHHHHHhhcCCCcccccccCchHHhhhcCCccccCCCCcccCCCCCCchHHHHHHHHH
Q 022358 161 HAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITD 240 (298)
Q Consensus 161 k~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~lp~~~~W~~~L~~~~~~ 240 (298)
|+|+.++++..++++++.....++++++++.+..........+|+.++++.+.|..|..+++.+|++.+|++.|++++.+
T Consensus 160 K~Dl~~~~~~~~e~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~pv~~ve~~~~~~~n~~g~~~lp~~~~w~~~~~~~~~~ 239 (262)
T 3def_A 160 HAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITD 239 (262)
T ss_dssp CTTCCCSTTCCHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHCCEEEECCCCTTCCBCTTSCBBCTTSCBSCC-CHHHHHH
T ss_pred CcccCCCCCccHHHHHHhhhHHHHHHHHHHhCccccccccccCCEEEEeCCCCCCCCCCCCeECCCCCeeHHHHHHHHHH
Confidence 99997777889999998777788999988765443222223478888999999999999999999999999999999999
Q ss_pred HHhcCCCcccchhhhcc
Q 022358 241 VATNKSKSIVVDKKLID 257 (298)
Q Consensus 241 ~~~~~~~~~~~~~~~~~ 257 (298)
.+.+..+++++|+++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~ 256 (262)
T 3def_A 240 VATNQRKAIHVDAAALE 256 (262)
T ss_dssp HHTSCSCCEEC------
T ss_pred HHhCCCCceeccHHHhh
Confidence 99999999999998765
No 3
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=6.5e-22 Score=171.37 Aligned_cols=153 Identities=22% Similarity=0.277 Sum_probs=106.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCC--CcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQ--SEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~--~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
...++|+|+|.+|+|||||+|+|+|...... ..+ ++|..+......+.+..+.||||||+.+......+..+.+..+
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~-~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHS-GTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC--------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCcc-CCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999999876332 222 5667777778888999999999999998776665555555554
Q ss_pred h--hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCCCCChHHHhhhccHHHHHHHHhh
Q 022358 113 L--LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLG 190 (298)
Q Consensus 113 ~--~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~ 190 (298)
+ ..+++|++|+|++++ +++..+..++..+.+.++...+.|+++|+||+|+. ....+++++....+.+++++++|
T Consensus 106 ~~~~~~~~~~~l~v~d~~--~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~--~~~~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLG--RYTEEEHKATEKILKMFGERARSFMILIFTRKDDL--GDTNLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHTTTCCSEEEEEEETT--CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--------------CHHHHHHHHHH
T ss_pred HHhcCCCCcEEEEEeeCC--CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccC--CcccHHHHHHhchHHHHHHHHHc
Confidence 3 346899999997765 56677888889998888766667999999999985 33457777776667888999888
Q ss_pred cC
Q 022358 191 AG 192 (298)
Q Consensus 191 ~~ 192 (298)
+.
T Consensus 182 ~~ 183 (239)
T 3lxx_A 182 GD 183 (239)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 4
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.86 E-value=3e-21 Score=168.36 Aligned_cols=154 Identities=22% Similarity=0.286 Sum_probs=113.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccC-CCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCc-HHHHHHHHh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS-FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN-YQALELIKG 111 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~-~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~-~~~~~~i~~ 111 (298)
...+++|+|+|.+|+|||||+|+|+|......+. ..++|..+......+++..+.||||||+.+..... ++....+.+
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 3467999999999999999999999998755443 23467777778888899999999999998754332 223333433
Q ss_pred hh--hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCC-ceEEEEEeCcCCCCCCCCChHHHhhhc-cHHHHHHH
Q 022358 112 FL--LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIW-RKSLLVLTHAQLCPPDGLNYDVYCSKR-SDALLKTI 187 (298)
Q Consensus 112 ~~--~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~-~~~ivV~tk~D~~~~~~~~~~~~~~~~-~~~l~~~i 187 (298)
++ +.+++|++|+|++++ +++..+..+++.+.+.++...+ .|+++|.||+|+. +.+.++++... .+.+++++
T Consensus 98 ~~~~~~~~~d~il~V~d~~--~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~---~~~~~~~l~~~~~~~l~~l~ 172 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLG--RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLA---GGSLHDYVSNTENRALRELV 172 (247)
T ss_dssp HHHHHTTCCSEEEEEEETT--BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT---TCCHHHHHHHCCCHHHHHHH
T ss_pred HHHhcCCCCCEEEEEEeCC--CCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcC---CCCHHHHHhhcccHHHHHHH
Confidence 32 348999999997765 6888889999999999887543 6889999999984 34677887653 36789999
Q ss_pred HhhcC
Q 022358 188 RLGAG 192 (298)
Q Consensus 188 ~~~~~ 192 (298)
++|+.
T Consensus 173 ~~~g~ 177 (247)
T 3lxw_A 173 AECGG 177 (247)
T ss_dssp HHTTT
T ss_pred HHcCC
Confidence 88853
No 5
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.81 E-value=1.8e-18 Score=151.41 Aligned_cols=187 Identities=21% Similarity=0.223 Sum_probs=128.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC-cceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS-EALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~-~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
....++|+|+|.+|+|||||+|+|++...+..+..+. +|.........+.+.++.+|||||+.+.......+.+.+.++
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999999988655444333 566666677788999999999999988765555544444332
Q ss_pred h--hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEe-CcCCCCCCCCChHHHhhhc-cHHHHHHHH
Q 022358 113 L--LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT-HAQLCPPDGLNYDVYCSKR-SDALLKTIR 188 (298)
Q Consensus 113 ~--~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~t-k~D~~~~~~~~~~~~~~~~-~~~l~~~i~ 188 (298)
. ..+.+|++++|++++ +++..+..+++.+.+.++.....|.++|+| |+|+.+ ..+.+++... ...++++++
T Consensus 99 ~~~~~~~~d~il~V~d~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~---~~~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLG--RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG---GSLMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHTTCCSEEEEEEETT--CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHHHH
T ss_pred HHhcCCCCcEEEEEEeCC--CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC---ccHHHHHHhcchHHHHHHHH
Confidence 2 237899999997776 477778888899999988766678888888 999852 2455555432 345666777
Q ss_pred hhcCCCcccccccCchHHhhhcCCccccCCCCcccCCCCCCchHHHHHHHHHHHhcCC
Q 022358 189 LGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKS 246 (298)
Q Consensus 189 ~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~lp~~~~W~~~L~~~~~~~~~~~~ 246 (298)
.+...... .. .+|++...+. -+.+|+..+.+.+....
T Consensus 174 ~~~~~~~~-~~--~~~~SA~~~~------------------gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 174 ACGGRICA-FN--NRAEGSNQDD------------------QVKELMDCIEDLLMEKN 210 (260)
T ss_dssp HTTTCEEE-CC--TTCCHHHHHH------------------HHHHHHHHHHHHHHHTT
T ss_pred HhCCeEEE-ec--CcccccccHH------------------HHHHHHHHHHHHHHhCC
Confidence 66431100 00 0333222111 17889988888887654
No 6
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.75 E-value=3.5e-17 Score=139.31 Aligned_cols=124 Identities=16% Similarity=0.185 Sum_probs=91.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC-cccccCCCCcceeEEEEEEE-ECCeEEEEEeCCCCCCCCcCc---HHHHHHHH
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRS-KGGFTLNIIDTPGLVEAGYVN---YQALELIK 110 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~-~~g~~l~viDTPG~~~~~~~~---~~~~~~i~ 110 (298)
..++|+|+|.+|+|||||+|+|++.. ...++..+++|.....+... ..+..+.+|||||+.+..... +.+...+.
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 56899999999999999999999987 45666667777766655554 557899999999997754332 12233333
Q ss_pred hhh-hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 111 GFL-LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 111 ~~~-~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.++ ....+|+++||++... .++..+..+++.+... ..|+++|+||+|+.
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~l~~~-----~~p~i~v~nK~Dl~ 157 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARR-PLTELDRRMIEWFAPT-----GKPIHSLLTKCDKL 157 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHGGG-----CCCEEEEEECGGGS
T ss_pred HHHhcCcCcCEEEEEEeCCC-CCCHHHHHHHHHHHhc-----CCCEEEEEeccccC
Confidence 333 2356899999977654 4677777887777663 27999999999985
No 7
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.73 E-value=7e-17 Score=145.09 Aligned_cols=123 Identities=20% Similarity=0.281 Sum_probs=93.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC-CeEEEEEeCCCCCCCCcCc---HHHHHHHH
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-GFTLNIIDTPGLVEAGYVN---YQALELIK 110 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~~l~viDTPG~~~~~~~~---~~~~~~i~ 110 (298)
..+-.|+++|.+|||||||+|+|+|.....++..+++|........... +.++.+|||||+.+..... +.+.....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 3456899999999999999999999998777888888888777777777 8999999999998754111 22222333
Q ss_pred hhhhcCCCCEEEEEEeCCCCCCCHHHHHH-HHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 111 GFLLNKTIDVLLYADRLDAYRVDDLDRQI-IKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 111 ~~~~~~~~d~vl~v~~~d~~~~~~~~~~~-l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.++ ..+|++++|++.+. ..+..+... ++.+... ..|+++|+||+|+.
T Consensus 88 ~~l--~~aD~il~VvD~~~-~~~~~~~~~~~~~l~~~-----~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 88 QSL--EEADVILFMIDATE-GWRPRDEEIYQNFIKPL-----NKPVIVVINKIDKI 135 (308)
T ss_dssp HHH--HHCSEEEEEEETTT-BSCHHHHHHHHHHTGGG-----CCCEEEEEECGGGS
T ss_pred HHh--hcCCEEEEEEeCCC-CCCchhHHHHHHHHHhc-----CCCEEEEEECccCC
Confidence 333 58999999977764 456666665 6655552 28999999999985
No 8
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.73 E-value=2e-16 Score=135.64 Aligned_cols=135 Identities=21% Similarity=0.272 Sum_probs=87.0
Q ss_pred HHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHH--
Q 022358 27 LSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-- 104 (298)
Q Consensus 27 l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~-- 104 (298)
...++......++|+|+|.+|+|||||+|+|++.... +...+.+|...........+..+.+|||||+.+.......
T Consensus 19 ~~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~ 97 (228)
T 2qu8_A 19 FQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTI 97 (228)
T ss_dssp ---CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHH
T ss_pred eccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhH
Confidence 3445554567899999999999999999999998763 4455566666666666778889999999999764322211
Q ss_pred HHHHHHhhhhcCCCCEEEEEEeCCCCC-CC-HHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCC
Q 022358 105 ALELIKGFLLNKTIDVLLYADRLDAYR-VD-DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (298)
Q Consensus 105 ~~~~i~~~~~~~~~d~vl~v~~~d~~~-~~-~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 167 (298)
....+..+ ...+|++++|++++... +. ..+..++..+...+. ..|+++|+||+|+.+.
T Consensus 98 ~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~---~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 98 EMTTITAL--AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFS---NKSIVIGFNKIDKCNM 157 (228)
T ss_dssp HHHHHHHH--HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC----CCCEEEEEECGGGCC-
T ss_pred HHHHHHHh--hccccEEEEEEecccccCcchHHHHHHHHHHHHhhc---CCcEEEEEeCcccCCc
Confidence 11222222 26789999998886532 33 223445555554322 3899999999999643
No 9
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.72 E-value=1.7e-16 Score=142.11 Aligned_cols=124 Identities=19% Similarity=0.222 Sum_probs=92.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHH-HHHHHHhhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-ALELIKGFLL 114 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~-~~~~i~~~~~ 114 (298)
+..+|+++|.+|+|||||+|+|+|.....++..+++|...........+.++.+|||||+.+....-.+ +......++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l- 84 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL- 84 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT-
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH-
Confidence 456899999999999999999999988777777777776655556678899999999999865432122 222222233
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++.+. .++..+..+++.+.+..+ ..|+++|+||+|+.
T Consensus 85 -~~ad~il~VvD~~~-~~~~~~~~i~~~l~~~~~---~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 85 -ADVNAVVWVVDLRH-PPTPEDELVARALKPLVG---KVPILLVGNKLDAA 130 (301)
T ss_dssp -SSCSEEEEEEETTS-CCCHHHHHHHHHHGGGTT---TSCEEEEEECGGGC
T ss_pred -hcCCEEEEEEECCC-CCChHHHHHHHHHHhhcC---CCCEEEEEECcccC
Confidence 68999999977764 467777666677766532 28999999999985
No 10
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.71 E-value=2e-16 Score=127.17 Aligned_cols=120 Identities=19% Similarity=0.197 Sum_probs=82.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 117 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~ 117 (298)
.+|+++|.+|+|||||+|++++.........++.+...........+..+.+|||||.................+. ..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~--~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRAL--ED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHT--TT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHH--Hh
Confidence 5899999999999999999998875445555666666666677788889999999999764433333333333333 68
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 118 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 118 ~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+|++++|++.+. .++..+..+.+.+.+. ..|+++|+||+|+.
T Consensus 80 ~~~~i~v~d~~~-~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 80 AEVVLFAVDGRA-ELTQADYEVAEYLRRK-----GKPVILVATKVDDP 121 (161)
T ss_dssp CSEEEEEEESSS-CCCHHHHHHHHHHHHH-----TCCEEEEEECCCSG
T ss_pred CCEEEEEEECCC-cccHhHHHHHHHHHhc-----CCCEEEEEECcccc
Confidence 999999977764 3666666666666653 27999999999985
No 11
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.71 E-value=5.3e-17 Score=143.43 Aligned_cols=124 Identities=20% Similarity=0.315 Sum_probs=79.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccC-------CCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcH---
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNS-------FQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNY--- 103 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~-------~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~--- 103 (298)
..++|+|+|.+|+|||||+|+|++........ .+..+..........+| .++.+|||||+++.....+
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 46999999999999999999999987654332 12222233333444455 3899999999976532221
Q ss_pred HHH--------HHHHh-------hhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 104 QAL--------ELIKG-------FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 104 ~~~--------~~i~~-------~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.+. ..+.. .....++|+++|++......+.+.+..+++.+.. ..|+++|+||+|+.
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTL 157 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGS
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCC
Confidence 111 11111 1223568999999655544578888888877765 28999999999985
No 12
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.70 E-value=1.6e-16 Score=130.33 Aligned_cols=125 Identities=19% Similarity=0.189 Sum_probs=87.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHH-HHHHHhhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA-LELIKGFLL 114 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~-~~~i~~~~~ 114 (298)
...+|+++|.+|+|||||+|+|++.....++..+++|.........+++..+.+|||||+.+.....+.. ......+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-- 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQE-- 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHH--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHH--
Confidence 4589999999999999999999998755556666666666566677788899999999996543211111 1111111
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
...+|++++|++.+.. .+..+..++..+.+....+ .|+++|+||+|+.
T Consensus 81 ~~~ad~~i~v~D~~~~-~s~~~~~~~~~~~~~~~~~--~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTT-DAVDPAEIWPEFIARLPAK--LPITVVRNKADIT 128 (172)
T ss_dssp HHTCSEEEEEEETTTC-CCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHH
T ss_pred HHhCCEEEEEEECCCC-CCHHHHHHHHHHHHhcccC--CCEEEEEECccCC
Confidence 2589999999887652 2333556666676654333 7999999999984
No 13
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.70 E-value=3.8e-16 Score=129.83 Aligned_cols=121 Identities=18% Similarity=0.177 Sum_probs=77.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC-cccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCc---HHHHHHHHh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN---YQALELIKG 111 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~---~~~~~~i~~ 111 (298)
..++|+|+|.+|+|||||+|+|++.. .......+++|.....+.. + .++.+|||||+.+..... +.+......
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII--N-DELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE--T-TTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE--C-CcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 57999999999999999999999986 3334444555554443332 3 379999999987654432 122222233
Q ss_pred hh-hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 112 FL-LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 112 ~~-~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+. ....+|++++|++.+. ..+..+..+++.+.+. ..|+++|+||+|+.
T Consensus 99 ~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~ 147 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRH-APSNDDVQMYEFLKYY-----GIPVIVIATKADKI 147 (195)
T ss_dssp HHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGS
T ss_pred HHhhhhcCCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECcccC
Confidence 33 2245699999977764 4666676677776652 27999999999985
No 14
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.70 E-value=7.5e-16 Score=127.66 Aligned_cols=121 Identities=15% Similarity=0.136 Sum_probs=84.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcH---HHHHHHHhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY---QALELIKGF 112 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~---~~~~~i~~~ 112 (298)
..++|+++|.+|+|||||+|+|++......+..++.|....... .+.++.+|||||+........ .+......+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE---ECCcEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 46899999999999999999999988655555555555444332 244789999999876433221 122222222
Q ss_pred h-hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 113 L-LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~-~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
. ....+|++++|++.+. ..+..+..+++.+... ..|+++|+||+|+.
T Consensus 99 ~~~~~~~~~vi~v~d~~~-~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~ 146 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVDGRI-PPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKV 146 (195)
T ss_dssp HHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGS
T ss_pred HhcCcCceEEEEEecCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEEChhcC
Confidence 2 2356799999977654 4566667777777665 28999999999985
No 15
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.69 E-value=5.5e-17 Score=152.54 Aligned_cols=127 Identities=20% Similarity=0.268 Sum_probs=86.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCc--HHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN--YQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~--~~~~~~i~~~~ 113 (298)
..++|+++|.+|+|||||+|+|++.....++..+++|.........+++..+.+|||||+.+..... -+.+..++...
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 4589999999999999999999999876677777888777666778889999999999986543211 01122222111
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPD 168 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~ 168 (298)
....+|++++|++++. ..+..+..++..+.+. ..++++|+||+|+.+.+
T Consensus 254 ~~~~ad~~llv~D~~~-~~s~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~~~~ 302 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEE-GIIEQDKRIAGYAHEA-----GKAVVIVVNKWDAVDKD 302 (436)
T ss_dssp HHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSCCC
T ss_pred HHHhCCEEEEEEcCCc-CCcHHHHHHHHHHHHc-----CCcEEEEEECccCCCcc
Confidence 1247899999977765 4677777777666543 28999999999996433
No 16
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.67 E-value=5.6e-16 Score=136.94 Aligned_cols=121 Identities=15% Similarity=0.204 Sum_probs=89.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcH--HHH-HHHHhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY--QAL-ELIKGF 112 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~--~~~-~~i~~~ 112 (298)
+.++|+++|.+|+|||||+|+|+|... .++..+++|...........+..+.+|||||+.+...... ... ...+.+
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 568999999999999999999999974 6777888888887777888888999999999987552110 011 122333
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+....+|++++|++... .+....+...+.+.. .|+++|+||+|+.
T Consensus 81 ~~~~~~d~ii~VvD~~~---~~~~~~~~~~l~~~~-----~p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 81 ILSGDADLLINVVDASN---LERNLYLTLQLLELG-----IPCIVALNMLDIA 125 (274)
T ss_dssp HHHTCCSEEEEEEEGGG---HHHHHHHHHHHHHHT-----CCEEEEEECHHHH
T ss_pred HhhcCCCEEEEEecCCC---hHHHHHHHHHHHhcC-----CCEEEEEECccch
Confidence 44479999999965543 233445555666552 8999999999984
No 17
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.67 E-value=3.9e-16 Score=147.58 Aligned_cols=129 Identities=19% Similarity=0.257 Sum_probs=90.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCc--HHHHHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN--YQALELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~--~~~~~~i~~~ 112 (298)
...++|+++|.+|+|||||+|++++.....++..+++|..........++..+.+|||||+.+..... .+....++..
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 34689999999999999999999998766777777777776666777889999999999987533211 1112222211
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 169 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~ 169 (298)
.....+|++++|++... .+++.+..++..+.+. ..|+++|+||+|+.+.+.
T Consensus 273 ~~~~~ad~~llviD~~~-~~~~~~~~~~~~~~~~-----~~~~ilv~NK~Dl~~~~~ 323 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEE-GIIEQDKRIAGYAHEA-----GKAVVIVVNKWDAVDKDE 323 (456)
T ss_dssp HHHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSCCCS
T ss_pred HHHhhCCEEEEEEeCCC-CcCHHHHHHHHHHHHc-----CCCEEEEEEChhcCCCch
Confidence 12257899999976654 5778888888777763 289999999999964443
No 18
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.66 E-value=8.7e-16 Score=125.64 Aligned_cols=119 Identities=13% Similarity=0.089 Sum_probs=79.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
...++|+++|.+|+|||||+|+|++.... ....+..+..........++ ..+.+|||||..........+
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~------- 78 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTY------- 78 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGG-------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHH-------
Confidence 45689999999999999999999988753 23333444444445556676 678999999965433322211
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
...+|++++|++++.......-..++..+..... ..|+++|+||+|+.+
T Consensus 79 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 79 --YRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDPE 127 (181)
T ss_dssp --GTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCGG
T ss_pred --hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCch
Confidence 1688999999887752211112345555555443 389999999999853
No 19
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=2.2e-15 Score=123.40 Aligned_cols=123 Identities=11% Similarity=0.097 Sum_probs=77.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe--EEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
...++|+++|.+|+|||||+|++++.........+..+..........++. .+.+|||||..... .....+
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~ 80 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR-------SVTHAY 80 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHH
Confidence 456899999999999999999999876532222233333333333455554 78999999964321 112222
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPD 168 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~ 168 (298)
. ..+|++++|++++.......-..++..+...... ..|+++|+||+|+.+..
T Consensus 81 ~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~ 132 (180)
T 2g6b_A 81 Y--RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH--DVALMLLGNKVDSAHER 132 (180)
T ss_dssp G--GGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECCSTTSCC
T ss_pred c--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccCccc
Confidence 2 5789999998776522111123455666655433 38999999999996433
No 20
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.66 E-value=1.2e-15 Score=143.44 Aligned_cols=120 Identities=19% Similarity=0.298 Sum_probs=81.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCC--cCcHHHHHHHHhhhhc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG--YVNYQALELIKGFLLN 115 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~--~~~~~~~~~i~~~~~~ 115 (298)
.+|+++|.+|||||||+|+|++...+.++..++.|.........+++..+.+|||||+.... ...+.+......+.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~-- 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI-- 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH--
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHH--
Confidence 47999999999999999999999876778888888877777888899999999999997532 12233333333333
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++... .++..+..+.+.+++.. +|+++|+||+|+.
T Consensus 80 ~~ad~il~V~D~~~-~~~~~d~~i~~~l~~~~-----~p~ilv~NK~D~~ 123 (439)
T 1mky_A 80 READLVLFVVDGKR-GITKEDESLADFLRKST-----VDTILVANKAENL 123 (439)
T ss_dssp TTCSEEEEEEETTT-CCCHHHHHHHHHHHHHT-----CCEEEEEESCCSH
T ss_pred HhCCEEEEEEECCC-CCCHHHHHHHHHHHHcC-----CCEEEEEeCCCCc
Confidence 78999999976653 47777777777676542 8999999999973
No 21
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.65 E-value=1.9e-15 Score=125.55 Aligned_cols=124 Identities=15% Similarity=0.152 Sum_probs=82.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKG 111 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~ 111 (298)
....++|+|+|.+|+|||||+|+|++..... ...+..+..........++ ..+.+|||||......... ..+
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---~~~-- 86 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITS---SYY-- 86 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHH---HHH--
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHH---HHH--
Confidence 3356899999999999999999999876422 2233334444444555666 5789999999754332211 111
Q ss_pred hhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCCC
Q 022358 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 169 (298)
Q Consensus 112 ~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~ 169 (298)
..+|++++|++++....-+....++..+......+ .|+++|+||+|+.+...
T Consensus 87 ----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~~~ 138 (196)
T 3tkl_A 87 ----RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTKKV 138 (196)
T ss_dssp ----TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCC
T ss_pred ----hhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccccc
Confidence 68999999988775221122244566666655433 79999999999864433
No 22
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.65 E-value=1.5e-15 Score=124.18 Aligned_cols=115 Identities=11% Similarity=0.097 Sum_probs=79.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
.+.++|+++|.+|+|||||+|++++.... ....++.+..........++..+.+|||||..+...... . .
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~--~ 75 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVT-EQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRA-------R--G 75 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSS-CSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCC-------S--S
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccc-cCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHH-------H--H
Confidence 36789999999999999999999987653 222333333333445667888999999999865432221 1 1
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
...+|++++|++++. .......+.+..+.. . ..|+++|+||+|+.
T Consensus 76 ~~~~d~~i~v~d~~~-~~~~~~~~~l~~~~~---~--~~p~ilv~nK~Dl~ 120 (178)
T 2lkc_A 76 AQVTDIVILVVAADD-GVMPQTVEAINHAKA---A--NVPIIVAINKMDKP 120 (178)
T ss_dssp CCCCCEEEEEEETTC-CCCHHHHHHHHHHGG---G--SCCEEEEEETTTSS
T ss_pred HhhCCEEEEEEECCC-CCcHHHHHHHHHHHh---C--CCCEEEEEECccCC
Confidence 268899999987765 334444454444332 2 27999999999985
No 23
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.65 E-value=7.9e-16 Score=134.63 Aligned_cols=119 Identities=12% Similarity=0.132 Sum_probs=85.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCc---HHHHHHHHhhhh
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN---YQALELIKGFLL 114 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~---~~~~~~i~~~~~ 114 (298)
.+|+++|.+|+|||||+|+|+|... .++..++.|.........+++..+.+|||||+.+..... .......+.++.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSE-EEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-CccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 4799999999999999999999874 567788888888888888899999999999998754310 011112233444
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
...+|++++|++.+. .+....+...+.+. ..|+++|+||+|+.
T Consensus 81 ~~~~d~vi~VvDas~---~~~~~~l~~~l~~~-----~~pvilv~NK~Dl~ 123 (256)
T 3iby_A 81 DLEYDCIINVIDACH---LERHLYLTSQLFEL-----GKPVVVALNMMDIA 123 (256)
T ss_dssp HSCCSEEEEEEEGGG---HHHHHHHHHHHTTS-----CSCEEEEEECHHHH
T ss_pred hCCCCEEEEEeeCCC---chhHHHHHHHHHHc-----CCCEEEEEEChhcC
Confidence 478999999965543 12233333444332 38999999999985
No 24
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.65 E-value=4.1e-15 Score=120.08 Aligned_cols=118 Identities=15% Similarity=0.101 Sum_probs=76.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..++|+++|.+|+|||||+|++++..... ...+..+..........++ ..+.+|||||..+.......+ +
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~---~---- 75 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK-DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAY---Y---- 75 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC-CSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHH---H----
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHH---h----
Confidence 56899999999999999999999876422 1122222223333344444 478999999975443332222 1
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++.....+....++..+..... ..|+++|+||+|+.+
T Consensus 76 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 76 --RGAQACVLVFSTTDRESFEAISSWREKVVAEVG---DIPTALVQNKIDLLD 123 (168)
T ss_dssp --TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC---SCCEEEEEECGGGGG
T ss_pred --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccCc
Confidence 589999999887752211122345555555542 279999999999853
No 25
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.65 E-value=1.6e-15 Score=122.34 Aligned_cols=119 Identities=16% Similarity=0.116 Sum_probs=74.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
++++|+++|.+|+|||||+|++++..... ...+++..........+ ...+.+|||||..+.... ....+
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~---~~~~~---- 72 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAM---RDLYM---- 72 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC--SCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTH---HHHHH----
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHH---HHHHh----
Confidence 56899999999999999999999865422 22222222222223333 447899999998654321 11122
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++....-..-..++..+...... ...|+++|+||+|+.+
T Consensus 73 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 73 --KNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLED 122 (167)
T ss_dssp --HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGG
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECccccc
Confidence 3689999998877522111123455555554321 2389999999999853
No 26
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=9.1e-16 Score=124.34 Aligned_cols=121 Identities=20% Similarity=0.146 Sum_probs=74.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
+.++|+++|.+|+|||||+|++++...... ..++............+ ..+.+|||||..+.. ......+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~---~~~~~~~---- 72 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRES--YIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP---AMQRLSI---- 72 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSS--CCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH---HHHHHHH----
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCCccccEEEEEEECCEEEEEEEEECCCchhhH---HHHHHhc----
Confidence 468999999999999999999998764211 11111111122223333 478999999975432 1111122
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 167 (298)
..+|++++|++++.....+....++..+.+..+.....|+++|+||+|+.+.
T Consensus 73 --~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~ 124 (172)
T 2erx_A 73 --SKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 124 (172)
T ss_dssp --HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG
T ss_pred --ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc
Confidence 3689999998877522112223455556665432223899999999998543
No 27
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.64 E-value=3.9e-15 Score=120.46 Aligned_cols=118 Identities=18% Similarity=0.206 Sum_probs=75.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..++|+++|.+|+|||||+|++++..... ...+..+..........++ ..+.+|||||..+.......+ +
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~---~---- 73 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAY---Y---- 73 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC--------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHH---H----
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHH---h----
Confidence 45899999999999999999999876422 2222222223333444444 478999999975543332222 1
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++....-.....++..+....... .|+++|+||+|+.
T Consensus 74 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~ 121 (170)
T 1g16_A 74 --RGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDME 121 (170)
T ss_dssp --TTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCT
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCC
Confidence 58899999988765221112235566666654333 7999999999983
No 28
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.64 E-value=3.4e-15 Score=130.78 Aligned_cols=119 Identities=19% Similarity=0.330 Sum_probs=87.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCc-HHHHHHHHhhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN-YQALELIKGFLL 114 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~-~~~~~~i~~~~~ 114 (298)
+.++|+++|.+|+|||||+|+|+|... .++.+++.|...........+..+.+|||||..+..... ++. ..+.++.
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~-~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~--v~~~~~~ 80 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEK--IARDYLL 80 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHH--HHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHH--HHHHHHh
Confidence 468999999999999999999999875 466778888877777778888999999999998754322 111 1223333
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
...+|++++|++.+. . +....+...+.+. ..|+++|+||+|+.
T Consensus 81 ~~~~d~ii~V~D~t~--~-~~~~~~~~~l~~~-----~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 81 KGDADLVILVADSVN--P-EQSLYLLLEILEM-----EKKVILAMTAIDEA 123 (258)
T ss_dssp HSCCSEEEEEEETTS--C-HHHHHHHHHHHTT-----TCCEEEEEECHHHH
T ss_pred hcCCCEEEEEeCCCc--h-hhHHHHHHHHHhc-----CCCEEEEEECcCCC
Confidence 368999999966553 2 2233344444432 38999999999984
No 29
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.64 E-value=9.3e-15 Score=121.57 Aligned_cols=114 Identities=13% Similarity=0.112 Sum_probs=72.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC-------------------------------
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG------------------------------- 84 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g------------------------------- 84 (298)
..++|+|+|.+|+|||||+|+|++..... ...+..+..........++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHE-NTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCC-CcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 57999999999999999999999886421 1111111222222233333
Q ss_pred --------eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEE
Q 022358 85 --------FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSL 156 (298)
Q Consensus 85 --------~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~i 156 (298)
..+.+|||||..+..... ...+ ..+|++++|++++..........++..+....+ .|++
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~---~~~~------~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~----~pii 151 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIV---PLYY------RGATCAIVVFDISNSNTLDRAKTWVNQLKISSN----YIII 151 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTH---HHHH------TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----CEEE
T ss_pred cccCccceeEEEEEECCCcHHHHHHH---HHHh------cCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----CcEE
Confidence 689999999975433221 1111 688999999777642211122344555555432 8999
Q ss_pred EEEeCcC
Q 022358 157 LVLTHAQ 163 (298)
Q Consensus 157 vV~tk~D 163 (298)
+|+||+|
T Consensus 152 lv~NK~D 158 (208)
T 3clv_A 152 LVANKID 158 (208)
T ss_dssp EEEECTT
T ss_pred EEEECCC
Confidence 9999999
No 30
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.63 E-value=2.4e-15 Score=121.84 Aligned_cols=119 Identities=16% Similarity=0.156 Sum_probs=73.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..++|+++|.+|+|||||+|++++..... ...+..+..........++ ..+.+|||||..+... ....+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~- 75 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFND-KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA-------LGPIY- 75 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCS-SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------CCS-
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCc-CCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhh-------hHHHH-
Confidence 56899999999999999999999876422 1222222222223344444 4788999999643221 11111
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
...+|++++|++++..........++..+....+.+ .|+++|+||+|+.+
T Consensus 76 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~ 125 (170)
T 1z08_A 76 -YRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEK 125 (170)
T ss_dssp -STTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGG
T ss_pred -hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECccccc
Confidence 258899999988765221112234555566554333 89999999999854
No 31
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=1.3e-15 Score=126.76 Aligned_cols=120 Identities=13% Similarity=0.087 Sum_probs=77.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVV-TVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~-~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
...++|+|+|.+|+|||||+|++++.... ......+.+...........+..+.+|||||..+....... .+
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---~~---- 93 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPM---YY---- 93 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHH---HH----
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHH---hh----
Confidence 35799999999999999999999987642 22222232322222333334568999999997543221111 11
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++..........++..+.+.... ..|+++|+||+|+.
T Consensus 94 --~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 94 --RGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE--NIVMAIAGNKCDLS 141 (192)
T ss_dssp --TTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGG
T ss_pred --ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccc
Confidence 5889999998876532112224455666655432 28999999999985
No 32
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.63 E-value=1.2e-15 Score=123.51 Aligned_cols=118 Identities=13% Similarity=0.074 Sum_probs=75.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCcceeEEEEEEEEC--CeEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTV-NSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~-~~~~~~t~~~~~~~~~~~--g~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
+.++|+++|.+|+|||||+|++++...... .+..+.+... ...... +..+.+|||||..+...... .+
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Dt~G~~~~~~~~~-------~~ 75 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMT--KTVQYQNELHKFLIWDTAGLERFRALAP-------MY 75 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEE--EEEEETTEEEEEEEEEECCSGGGGGGTH-------HH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEE--EEEEECCeEEEEEEEcCCCchhhhcccH-------hh
Confidence 468999999999999999999998764221 1222222222 223333 35789999999843222111 11
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
. ..+|++++|++++..........++..+...... ..|+++|+||+|+.+
T Consensus 76 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 76 Y--RGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP--SIVVAIAGNKCDLTD 125 (170)
T ss_dssp H--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TSEEEEEEECTTCGG
T ss_pred C--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECCcccc
Confidence 1 6889999998876522112224455666665333 378999999999853
No 33
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.63 E-value=4.6e-15 Score=122.26 Aligned_cols=118 Identities=19% Similarity=0.179 Sum_probs=75.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeE--EEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFT--LNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~--l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
.+++|+++|.+|+|||||+|+|++.... ....+++..........++.. +.+|||||..+.......+ +
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~---~---- 73 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQY---M---- 73 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCC--CCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHH---H----
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHH---H----
Confidence 5689999999999999999999987642 233344444444445556654 7789999976544332222 2
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++....-..-..++..+..... ....|+++|+||+|+.
T Consensus 74 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 74 --RTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLP 122 (189)
T ss_dssp --HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSS
T ss_pred --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCc
Confidence 368999999888753211122344455555432 1237999999999985
No 34
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.63 E-value=5.4e-15 Score=119.87 Aligned_cols=117 Identities=13% Similarity=0.141 Sum_probs=75.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
.+.++|+++|.+|+|||||+|++++...... . .|.........+++..+.+|||||....... ...++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~--~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-------~~~~~- 72 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTT--I--PTIGFNVETVTYKNLKFQVWDLGGLTSIRPY-------WRCYY- 72 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCC--C--CCSSEEEEEEEETTEEEEEEEECCCGGGGGG-------GGGGC-
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCc--C--CcCccceEEEEECCEEEEEEECCCChhhhHH-------HHHHh-
Confidence 3569999999999999999999997764221 1 1233344456677899999999998532211 11122
Q ss_pred cCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++... +.... ..+..+..... ....|+++|+||+|+.+
T Consensus 73 -~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 73 -SNTDAVIYVVDSCDRDRIGISK-SELVAMLEEEE-LRKAILVVFANKQDMEQ 122 (171)
T ss_dssp -TTCSEEEEEEETTCCTTHHHHH-HHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred -ccCCEEEEEEECCCHHHHHHHH-HHHHHHHhchh-hCCCEEEEEEECCCCcC
Confidence 6899999998876532 22222 22222222110 12389999999999953
No 35
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.63 E-value=5.4e-15 Score=118.74 Aligned_cols=119 Identities=19% Similarity=0.174 Sum_probs=75.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
++++|+++|.+|+|||||+|++++..... ...+++..........++ ..+.+|||||..+... .....+
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~~~~~~---- 72 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVD--ECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA---MRDQYM---- 72 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCH---HHHHHH----
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCcc--ccCCccceEEEEEEEECCEEEEEEEEECCCchhhhH---HHHHhh----
Confidence 46899999999999999999999876422 222222222233344444 4578999999754332 111122
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++.......-..++..+...... ...|+++|+||+|+.+
T Consensus 73 --~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 73 --RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAA 122 (166)
T ss_dssp --HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhh
Confidence 3689999998876422111223455555555431 1379999999999864
No 36
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.63 E-value=1.4e-15 Score=143.98 Aligned_cols=123 Identities=20% Similarity=0.195 Sum_probs=64.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHH-HHHHHhhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA-LELIKGFLL 114 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~-~~~i~~~~~ 114 (298)
+.++|+++|.+|+|||||+|+|++.+.+.++..+++|..........+|.++.+|||||+.+.....+.. .+.... .
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~--~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRM--K 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------C--C
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHh--h
Confidence 4589999999999999999999999876778888888877777788899999999999997643221111 111111 2
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHH-HHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDR-QIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
...+|++++|++.+. ..+..+. .....+... . ..|+++|+||+|+.
T Consensus 310 ~~~aD~vl~VvD~s~-~~s~~~~~~~~~~l~~l-~---~~piIvV~NK~Dl~ 356 (476)
T 3gee_A 310 MAEADLILYLLDLGT-ERLDDELTEIRELKAAH-P---AAKFLTVANKLDRA 356 (476)
T ss_dssp CSSCSEEEEEEETTT-CSSGGGHHHHHHHHHHC-T---TSEEEEEEECTTSC
T ss_pred cccCCEEEEEEECCC-CcchhhhHHHHHHHHhc-C---CCCEEEEEECcCCC
Confidence 368999999977765 2333111 122222222 2 28999999999985
No 37
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.63 E-value=2.9e-15 Score=122.27 Aligned_cols=120 Identities=13% Similarity=0.077 Sum_probs=75.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
...++|+|+|.+|+|||||+|++++....... .+..+...........+ ..+.+|||||..+.. ......+
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~--- 85 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADC-PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR---AVTRSYY--- 85 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC-TTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC---HHHHHHH---
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceEEEEEEEEECCeEEEEEEEECCCChHhh---hhHHHHh---
Confidence 34689999999999999999999987642211 11111122222333443 578999999964322 1222222
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++..........++..+...... ..|+++|+||+|+.+
T Consensus 86 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 86 ---RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIILIGNKADLEA 134 (179)
T ss_dssp ---HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGG
T ss_pred ---ccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccccc
Confidence 4789999998876522111223455556655433 389999999999853
No 38
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.63 E-value=4.4e-15 Score=120.63 Aligned_cols=120 Identities=18% Similarity=0.283 Sum_probs=76.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
...+|+++|++|+|||||+|+|++... .++..++.|.........+++..+.+|||||..+...... .......+...
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI-DEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSS-SCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSH-HHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCe-eccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcch-hHHHHHHHHhc
Confidence 458999999999999999999998764 3344555455444445567788999999999876432211 11111222222
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++... . +....++..+.+. ..|+++|+||+|+.
T Consensus 80 ~~~~~~i~v~D~~~--~-~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 80 EKPDLVVNIVDATA--L-ERNLYLTLQLMEM-----GANLLLALNKMDLA 121 (165)
T ss_dssp HCCSEEEEEEETTC--H-HHHHHHHHHHHHT-----TCCEEEEEECHHHH
T ss_pred CCCCEEEEEecCCc--h-hHhHHHHHHHHhc-----CCCEEEEEEchHhc
Confidence 47899999976653 2 2223344444432 28999999999974
No 39
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.62 E-value=2.7e-15 Score=122.49 Aligned_cols=120 Identities=14% Similarity=0.132 Sum_probs=77.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
.++++|+|+|.+|+|||||+|++++..... ...+..+..........++ ..+.+|||||..+...... ..+
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~---~~~--- 84 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP---SYI--- 84 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSH---HHH---
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHH---HHh---
Confidence 456899999999999999999999775422 2222333333334445555 4789999999743322111 112
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++..........++..+....+.+ .|+++|+||+|+.+
T Consensus 85 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 85 ---RDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSD 133 (179)
T ss_dssp ---HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECGGGGG
T ss_pred ---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccc
Confidence 47899999988765221112234555555554433 89999999999853
No 40
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.62 E-value=3.8e-15 Score=122.71 Aligned_cols=121 Identities=16% Similarity=0.123 Sum_probs=78.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKG 111 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~ 111 (298)
....++|+|+|.+|+|||||+|++++...... ..+..+..........++ ..+.+|||||..+ +......
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~ 78 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDD-SNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER-------FRSVTRS 78 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTT-CCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG-------GHHHHHT
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCccceEEEEEEEEECCEEEEEEEEeCCCcHH-------HHHHHHH
Confidence 34569999999999999999999998765322 222223233333445555 5789999999632 1122222
Q ss_pred hhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 112 ~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
+. ..+|++++|++++.......-..++..+...... ..|+++|+||+|+.+
T Consensus 79 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 79 YY--RGAAGALLVYDITSRETYNALTNWLTDARMLASQ--NIVIILCGNKKDLDA 129 (186)
T ss_dssp TS--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGG
T ss_pred HH--hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccccc
Confidence 22 6899999998877522111123455555555433 389999999999853
No 41
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.62 E-value=2e-14 Score=117.31 Aligned_cols=120 Identities=19% Similarity=0.185 Sum_probs=75.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..++|+++|.+|+|||||+|++++..... ...+..+..........++ ..+.+|||||... +......+.
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~ 77 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER-------FRSLRTPFY 77 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC-----CCSEEEEEEEEEETTEEEEEEEEECCCCGG-------GHHHHGGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeEEEEEEEECCEEEEEEEEeCCCchh-------hhhhHHHHH
Confidence 46899999999999999999999776422 2222222233334445565 4889999999632 111222222
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCC--CCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++.......-..++..+...... ....|+++|+||+|+.
T Consensus 78 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 78 --RGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred --hcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 6899999998887532111123455556555431 1237999999999985
No 42
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.62 E-value=7.3e-15 Score=123.40 Aligned_cols=120 Identities=14% Similarity=0.144 Sum_probs=78.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..++|+|+|.+|+|||||+|+|++..... ...+..+.........+++ ..+.+|||||..+....... ++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-------~~ 78 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTN-DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSS-------YY 78 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCT-TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGG-------GG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHH-------hc
Confidence 46899999999999999999999876532 2222223233333444555 47999999998654432221 11
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 167 (298)
..+|++++|++++..........++..+...... ..|+++|+||+|+.+.
T Consensus 79 --~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 79 --RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS--TVLKLLVGNKCDLKDK 128 (206)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTT
T ss_pred --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccc
Confidence 6889999998876522111223455556555433 3799999999999643
No 43
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.62 E-value=2.3e-15 Score=125.15 Aligned_cols=124 Identities=13% Similarity=0.109 Sum_probs=76.5
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE--CCeEEEEEeCCCCCCCCcCcHHHHHH
Q 022358 31 KQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALEL 108 (298)
Q Consensus 31 ~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~l~viDTPG~~~~~~~~~~~~~~ 108 (298)
.+.....++|+|+|.+|+|||||+|+|++........ +..+.......... .+..+.+|||||..+....... .
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---~ 94 (193)
T 2oil_A 19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSR-TTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSA---Y 94 (193)
T ss_dssp -CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCC-CCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHH---H
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCC-CccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHH---H
Confidence 3334457999999999999999999999876533221 11111112222233 3457899999998654332211 1
Q ss_pred HHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 109 IKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 109 i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
+ ..+|++++|++++....-..-..++..+..... ...|+++|+||+|+.+
T Consensus 95 ~------~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 95 Y------RGAVGALLVFDLTKHQTYAVVERWLKELYDHAE--ATIVVMLVGNKSDLSQ 144 (193)
T ss_dssp H------TTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSC--TTCEEEEEEECGGGGG
T ss_pred h------ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECCCccc
Confidence 1 689999999777642111111234444444332 2389999999999853
No 44
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.62 E-value=4.4e-15 Score=121.63 Aligned_cols=122 Identities=11% Similarity=0.069 Sum_probs=77.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
...++|+++|.+|+|||||+|++++....... .+..+.........+. +..+.+|||||......... .+
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~ 81 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQ-ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAP-------MY 81 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTS-CCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTH-------HH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcC-CCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhH-------HH
Confidence 45689999999999999999999987653322 1111222222233334 35799999999643221111 11
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPD 168 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~ 168 (298)
+ ..+|++++|++++....-+....++..+...... ..|+++|+||+|+.+..
T Consensus 82 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~~ 133 (181)
T 2efe_B 82 Y--RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP--NMVMALAGNKSDLLDAR 133 (181)
T ss_dssp H--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTC
T ss_pred h--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCcccccc
Confidence 1 6899999998876522112234556666665432 37999999999996433
No 45
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.62 E-value=2.5e-15 Score=122.36 Aligned_cols=123 Identities=15% Similarity=0.094 Sum_probs=70.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..++|+++|.+|+|||||+|++++..........+.+... ....+++ ..+.+|||||...... ... ...+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~g~~~~~~--~~~---~~~~- 74 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYE--RTLTVDGEDTTLVVVDTWEAEKLDK--SWS---QESC- 74 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEE--EEEEETTEEEEEEEECCC---------CHH---HHHT-
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeE--EEEEECCEEEEEEEEecCCCCccch--hhh---HHhh-
Confidence 5689999999999999999999998765444444433322 2334455 3789999999854211 011 1111
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPD 168 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~ 168 (298)
...+|++++|++++...--.....++..+..... ....|+++|+||+|+.+..
T Consensus 75 -~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~ 127 (175)
T 2nzj_A 75 -LQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCR 127 (175)
T ss_dssp -TTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTC
T ss_pred -cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhcccc
Confidence 2578999999888752211112234444544321 1138999999999996433
No 46
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.62 E-value=1.5e-15 Score=122.41 Aligned_cols=120 Identities=15% Similarity=0.194 Sum_probs=75.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
+..++|+++|.+|+|||||+|++++.... ....+++..........++ ..+.+|||||..+.. .. ...+
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----~~---~~~~ 72 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA----AI---RDNY 72 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH----HH---HHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccC--CCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhH----HH---HHHH
Confidence 45789999999999999999999987642 2222333333333344555 478999999974321 11 1112
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
. ..+|++++|++++....-.....++..+...... ...|+++|+||+|+.+
T Consensus 73 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 73 F--RSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLED 123 (168)
T ss_dssp H--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGG
T ss_pred h--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccc
Confidence 2 4689999998877522111223455555555431 1379999999999853
No 47
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.62 E-value=8.7e-15 Score=121.77 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=77.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe--EEEEEeCCCCCCCCcCcHHHHHHHHh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKG 111 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~viDTPG~~~~~~~~~~~~~~i~~ 111 (298)
....++|+++|.+|+|||||+|++++.... ....+++..........++. .+.+|||||..+...... .
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~ 90 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIP--TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRP-------L 90 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGG-------G
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCC--CccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhH-------h
Confidence 345799999999999999999999987642 22223333333333445554 569999999643322111 1
Q ss_pred hhhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 112 FLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 112 ~~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
....+|++++|++++... +......++..+...... .|+++|+||+|+.+
T Consensus 91 --~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 91 --SYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT---AKTVLVGLKVDLRK 141 (194)
T ss_dssp --GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTT---SEEEEEEECGGGCC
T ss_pred --hccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhhcc
Confidence 126899999998887522 222224456666655432 79999999999863
No 48
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.62 E-value=1e-14 Score=121.47 Aligned_cols=121 Identities=16% Similarity=0.193 Sum_probs=73.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKG 111 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~ 111 (298)
....++|+|+|.+|+|||||+|+|++...... ..+..+.........+++ ..+.+|||||.... . . ....
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---~-~---~~~~ 94 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEA-CKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF---N-S---ITSA 94 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG---H-H---HHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcC-CCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH---H-H---HHHH
Confidence 34568999999999999999999998765322 122222333333445555 47899999996421 1 1 1122
Q ss_pred hhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 112 ~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
++ ..+|++++|++++.......-..++..+......+ .|+++|+||+|+.+
T Consensus 95 ~~--~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilV~NK~Dl~~ 145 (192)
T 2il1_A 95 YY--RSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCET 145 (192)
T ss_dssp HH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGG
T ss_pred Hh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccccc
Confidence 22 47899999988775221111134455565554333 89999999999853
No 49
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=4.1e-14 Score=116.99 Aligned_cols=116 Identities=8% Similarity=0.017 Sum_probs=73.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
.+.++|+++|.+|+|||||+|++++.......+..+ .......+++..+.+|||||..+.......+ +
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~---~----- 81 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG----SNVEEIVINNTRFLMWDIGGQESLRSSWNTY---Y----- 81 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSC----SSCEEEEETTEEEEEEECCC----CGGGHHH---H-----
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCc----cceEEEEECCEEEEEEECCCCHhHHHHHHHH---h-----
Confidence 467999999999999999999999776532222111 1223445678999999999986543222211 1
Q ss_pred cCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++... +.. ...++..+..... ....|+++|+||+|+.
T Consensus 82 -~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 130 (187)
T 1zj6_A 82 -TNTEFVIVVVDSTDRERISV-TREELYKMLAHED-LRKAGLLIFANKQDVK 130 (187)
T ss_dssp -TTCCEEEEEEETTCTTTHHH-HHHHHHHHHTSGG-GTTCEEEEEEECTTST
T ss_pred -cCCCEEEEEEeCCCHHHHHH-HHHHHHHHHhchh-hCCCeEEEEEECCCCc
Confidence 6899999998876532 222 2233333333210 1238999999999995
No 50
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.61 E-value=9.2e-15 Score=123.10 Aligned_cols=117 Identities=17% Similarity=0.204 Sum_probs=78.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..++|+|+|.+|+|||||+|++++.... ....+..+.........+++ ..+.+|||||..+.......+ +
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~---~---- 90 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY---Y---- 90 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCC-CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHH---H----
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHH---h----
Confidence 4689999999999999999999987642 22223333334444556666 578999999975433322211 1
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 164 (298)
..+|++++|++++..........++..+....... .|+++|+||+|+
T Consensus 91 --~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl 137 (213)
T 3cph_A 91 --RGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDM 137 (213)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTC--SEEEEEEECTTC
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCC
Confidence 68999999988765221111235566666654432 799999999998
No 51
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.61 E-value=7e-15 Score=118.82 Aligned_cols=120 Identities=15% Similarity=0.105 Sum_probs=75.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
.+++|+++|.+|+|||||+|++++...... ..+..+..........++ ..+.+|||||..+... .. ..++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~~----~~~~ 73 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAEN-KEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS---LA----PXYY 73 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTT-CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG---GH----HHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEECCCChhhhh---hh----hhhh
Confidence 358999999999999999999998764221 112222222223334444 4789999999643221 11 1112
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 167 (298)
..+|++++|++++..........++..+...... ..|+++|+||+|+.+.
T Consensus 74 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 74 --RNAQAALVVYDVTKPQSFIKARHWVKELHEQASK--DIIIALVGNKIDXLQE 123 (170)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGS
T ss_pred --ccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCCcccc
Confidence 6889999998877522112223455556555433 3899999999998643
No 52
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.61 E-value=8.5e-15 Score=119.61 Aligned_cols=122 Identities=20% Similarity=0.153 Sum_probs=75.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC---eEEEEEeCCCCCCCCcCcHHHHHHHHh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG---FTLNIIDTPGLVEAGYVNYQALELIKG 111 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g---~~l~viDTPG~~~~~~~~~~~~~~i~~ 111 (298)
...++|+++|.+|+|||||+|++++...... ..+..+.........+.+ ..+.+|||||.......... .+
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~---~~-- 77 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQ-YKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDK---YI-- 77 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHH-HHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHH---HH--
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCC-CCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhH---HH--
Confidence 4679999999999999999999998764211 111112223334445554 68999999998654332221 12
Q ss_pred hhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCce-EEEEEeCcCCCC
Q 022358 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLCP 166 (298)
Q Consensus 112 ~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~~ 166 (298)
..+|++++|++++....-+.-..++..+..........| +++|+||+|+.+
T Consensus 78 ----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 78 ----YGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129 (178)
T ss_dssp ----TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred ----hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence 589999999887652211111245555554322111134 899999999853
No 53
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.61 E-value=2.1e-14 Score=117.94 Aligned_cols=124 Identities=19% Similarity=0.205 Sum_probs=77.5
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeE--EEEEeCCCCCCCCcCcHHHHHH
Q 022358 31 KQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFT--LNIIDTPGLVEAGYVNYQALEL 108 (298)
Q Consensus 31 ~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~--l~viDTPG~~~~~~~~~~~~~~ 108 (298)
+......++|+++|.+|+|||||+|++++.... .....++..........++.. +.+|||||..+.......+
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~--- 86 (183)
T 3kkq_A 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFV--DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQY--- 86 (183)
T ss_dssp --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHH---
T ss_pred CccCCCceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHH---
Confidence 344567899999999999999999999976532 222233333334444555554 5669999975443322222
Q ss_pred HHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 109 IKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 109 i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
+ ..+|++++|++++....-..-..++..+...... ...|+++|+||+|+.+
T Consensus 87 ~------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 87 M------RTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMH 137 (183)
T ss_dssp H------HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCST
T ss_pred H------hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCCchh
Confidence 2 3689999998887532111123444555443321 2379999999999854
No 54
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.61 E-value=2.2e-14 Score=118.24 Aligned_cols=117 Identities=18% Similarity=0.208 Sum_probs=74.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
.+.++|+++|.+|+|||||+|++++.... ... .|.........+++..+.+|||||..+ .......+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~~~Dt~G~~~-------~~~~~~~~-- 82 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVD--TIS--PTLGFNIKTLEHRGFKLNIWDVGGQKS-------LRSYWRNY-- 82 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCS--SCC--CCSSEEEEEEEETTEEEEEEEECCSHH-------HHTTGGGG--
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCC--ccc--ccCccceEEEEECCEEEEEEECCCCHh-------HHHHHHHH--
Confidence 36799999999999999999999987721 111 122333445566889999999999732 11111122
Q ss_pred cCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
...+|++++|++++... +.. ...++..+..... ....|+++|+||+|+.+
T Consensus 83 ~~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 83 FESTDGLIWVVDSADRQRMQD-CQRELQSLLVEER-LAGATLLIFANKQDLPG 133 (186)
T ss_dssp CTTCSEEEEEEETTCGGGHHH-HHHHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred hcCCCEEEEEEECcCHHHHHH-HHHHHHHHHhChh-cCCCcEEEEEeCccCCC
Confidence 26899999998876522 211 1223333322210 12389999999999953
No 55
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.61 E-value=9.8e-15 Score=119.31 Aligned_cols=121 Identities=21% Similarity=0.197 Sum_probs=77.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKG 111 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~ 111 (298)
....++|+++|.+|+|||||+|++++... .....+++..........++ ..+.+|||||..+.......+ +
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~---~-- 78 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYF--VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQY---M-- 78 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHH---H--
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcC--ccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHH---H--
Confidence 34679999999999999999999998753 23333333333334455565 478899999986544332222 2
Q ss_pred hhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 112 ~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++....-..-..++..+..... ....|+++|+||+|+.+
T Consensus 79 ----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 79 ----RAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLES 128 (181)
T ss_dssp ----HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGG
T ss_pred ----hhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 368999999887752211112234444433322 11379999999999853
No 56
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=3.2e-15 Score=124.53 Aligned_cols=120 Identities=20% Similarity=0.093 Sum_probs=73.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
...++|+++|.+|+|||||+|+|++....... ..+...........++ ..+.+|||||..+.. ......+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~--- 77 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTY--IPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP---AMQRLSI--- 77 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTT--SCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH---HHHHHHH---
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcc--cCccccceeEEEEECCEEEEEEEEeCCChHHhH---HHHHHhh---
Confidence 35799999999999999999999987542211 1111111222223333 478999999975322 1111112
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++..........++..+.+..+.....|+++|+||+|+.
T Consensus 78 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~ 127 (199)
T 2gf0_A 78 ---SKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET 127 (199)
T ss_dssp ---HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCS
T ss_pred ---ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCC
Confidence 46899999988875221111223455555554322237999999999985
No 57
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.61 E-value=2.7e-15 Score=120.76 Aligned_cols=119 Identities=16% Similarity=0.153 Sum_probs=74.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe--EEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
++++|+++|.+|+|||||+|++++...... ..+++..........++. .+.+|||||..+.. ..... +.
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----~~~~~---~~ 72 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEK--YDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA----SMRDL---YI 72 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSC--CCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH----HHHHH---HH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCccc--CCCCcceeEEEEEEECCEEEEEEEEECCCchhhH----HHHHH---Hh
Confidence 568999999999999999999997764322 222222222334445554 58999999975422 11111 11
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++.......-..++..+.+.... ...|+++|+||+|+.+
T Consensus 73 --~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 73 --KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLES 122 (167)
T ss_dssp --HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGG
T ss_pred --ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCcccc
Confidence 4679999998776522111123344445444321 2389999999999853
No 58
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.61 E-value=2.3e-14 Score=134.80 Aligned_cols=119 Identities=20% Similarity=0.321 Sum_probs=82.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCc---------HHHH
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN---------YQAL 106 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~---------~~~~ 106 (298)
..++|+++|++|||||||+|+|+|.....+++.+++|.........++|..+.+|||||+....... ....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 3589999999999999999999999876778888888777777778899999999999985322111 1112
Q ss_pred HHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 107 ELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 107 ~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+ ..+|++++|++... ..+..+..+...+... .+++++|+||+|+.+
T Consensus 259 ~~i------~~ad~vllv~d~~~-~~~~~~~~i~~~l~~~-----~~~~ilv~NK~Dl~~ 306 (439)
T 1mky_A 259 DSI------EKADVVVIVLDATQ-GITRQDQRMAGLMERR-----GRASVVVFNKWDLVV 306 (439)
T ss_dssp HHH------HHCSEEEEEEETTT-CCCHHHHHHHHHHHHT-----TCEEEEEEECGGGST
T ss_pred HHH------hhCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECccCCC
Confidence 222 36899999976654 3566666555555443 289999999999853
No 59
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.61 E-value=3.3e-15 Score=120.66 Aligned_cols=122 Identities=11% Similarity=0.025 Sum_probs=64.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~ 116 (298)
.++|+++|.+|+|||||+|++++..........+.+.. ...........+.+|||||.......... +. .
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-------~~--~ 71 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGRWLPGH-------CM--A 71 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE-EEEEETTEEEEEEEEECC-----------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE-EEEEECCEEEEEEEEECCCCccchhhhhh-------hh--h
Confidence 47999999999999999999998876544444443332 22222223346889999997643322111 11 5
Q ss_pred CCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCCC
Q 022358 117 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 169 (298)
Q Consensus 117 ~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~ 169 (298)
.+|++++|++++....-+.-..++..+..... ....|+++|+||+|+.+...
T Consensus 72 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~ 123 (166)
T 3q72_A 72 MGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSRE 123 (166)
T ss_dssp -CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCC
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccccc
Confidence 78999999888753211112234444444321 12379999999999964433
No 60
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.60 E-value=9.3e-15 Score=120.60 Aligned_cols=125 Identities=19% Similarity=0.290 Sum_probs=78.5
Q ss_pred HHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHH
Q 022358 26 LLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA 105 (298)
Q Consensus 26 ~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~ 105 (298)
+++++.......++|+++|.+|+|||||+|++++.......+..+ .......+++..+.+|||||....
T Consensus 5 ~~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g----~~~~~~~~~~~~l~i~Dt~G~~~~------- 73 (181)
T 1fzq_A 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQG----FNIKSVQSQGFKLNVWDIGGQRKI------- 73 (181)
T ss_dssp HHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT----EEEEEEEETTEEEEEEECSSCGGG-------
T ss_pred HHHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC----eEEEEEEECCEEEEEEECCCCHHH-------
Confidence 344454444567999999999999999999999886433222111 223345567889999999997421
Q ss_pred HHHHHhhhhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 106 LELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 106 ~~~i~~~~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
......+. ..+|++++|++++... +... ...+..+..... ....|+++|+||+|+.
T Consensus 74 ~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 130 (181)
T 1fzq_A 74 RPYWRSYF--ENTDILIYVIDSADRKRFEET-GQELTELLEEEK-LSCVPVLIFANKQDLL 130 (181)
T ss_dssp HHHHHHHH--TTCSEEEEEEETTCGGGHHHH-HHHHHHHTTCGG-GTTCCEEEEEECTTST
T ss_pred HHHHHHHh--CCCCEEEEEEECcCHHHHHHH-HHHHHHHHhChh-hcCCCEEEEEECcCcc
Confidence 11112222 5899999998876522 2211 122222221110 1237999999999985
No 61
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.60 E-value=7.5e-15 Score=121.54 Aligned_cols=114 Identities=12% Similarity=0.098 Sum_probs=75.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
.+.++|+++|.+|+|||||+|++++.......+ |...........+..+.+|||||..+....... +
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~-------~-- 86 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVP----TVGVNLETLQYKNISFEVWDLGGQTGVRPYWRC-------Y-- 86 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECS----STTCCEEEEEETTEEEEEEEECCSSSSCCCCSS-------S--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCC----CCceEEEEEEECCEEEEEEECCCCHhHHHHHHH-------H--
Confidence 467999999999999999999998776533221 222223345567889999999998654322211 1
Q ss_pred cCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCC--CCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~ 165 (298)
...+|++++|++++... +.. ....+.+.... ....|+++|+||+|+.
T Consensus 87 ~~~~d~ii~v~d~~~~~s~~~----~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 136 (189)
T 2x77_A 87 FSDTDAVIYVVDSTDRDRMGV----AKHELYALLDEDELRKSLLLIFANKQDLP 136 (189)
T ss_dssp STTCCEEEEEEETTCCTTHHH----HHHHHHHHHTCSTTTTCEEEEEEECTTST
T ss_pred hhcCCEEEEEEeCCCHHHHHH----HHHHHHHHHhhhhcCCCeEEEEEECCCCc
Confidence 15899999998876522 222 12223333221 1238999999999995
No 62
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.60 E-value=2.1e-14 Score=119.69 Aligned_cols=116 Identities=10% Similarity=0.092 Sum_probs=71.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
.+.++|+++|.+|+|||||+|++++...... .+ |...........+..+.+|||||..+...... ..+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---~~~----- 94 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNICFTVWDVGGQDKIRPLWR---HYF----- 94 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEE--EE--ETTEEEEEEEETTEEEEEEECC-----CTTHH---HHH-----
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcccc--CC--cCceeEEEEEECCEEEEEEECCCCHhHHHHHH---HHh-----
Confidence 4679999999999999999999998764321 11 22233344566888999999999865332211 122
Q ss_pred cCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++... +... ..++..+..... ....|+++|+||+|+.
T Consensus 95 -~~~d~iilv~D~~~~~s~~~~-~~~l~~~~~~~~-~~~~piilv~NK~Dl~ 143 (192)
T 2b6h_A 95 -QNTQGLIFVVDSNDRERVQES-ADELQKMLQEDE-LRDAVLLVFANKQDMP 143 (192)
T ss_dssp -HTCCEEEEEEETTCGGGHHHH-HHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred -ccCCEEEEEEECCCHHHHHHH-HHHHHHHhcccc-cCCCeEEEEEECCCCC
Confidence 4789999998876522 2211 223333222110 1138999999999985
No 63
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.60 E-value=9.5e-15 Score=128.66 Aligned_cols=121 Identities=17% Similarity=0.204 Sum_probs=87.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
..++|+++|.+|+|||||+|+|+|... .++..++.|.........+.+..+.+|||||+.+......+. ...+.+...
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~-~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDE-LIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHH-HHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHH-HHHHHhhhc
Confidence 458999999999999999999999876 667778888887777888899999999999998754332221 122334445
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++.+. . .....+...+.+.. . .|+++|+||+|+.
T Consensus 80 ~~~d~vi~v~D~~~--~-~~~~~~~~~~~~~~-~---~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 80 GNADVIVDIVDSTC--L-MRNLFLTLELFEME-V---KNIILVLNKFDLL 122 (271)
T ss_dssp TCCSEEEEEEEGGG--H-HHHHHHHHHHHHTT-C---CSEEEEEECHHHH
T ss_pred cCCcEEEEEecCCc--c-hhhHHHHHHHHhcC-C---CCEEEEEEChhcC
Confidence 78999999965543 2 22233333333331 1 7999999999974
No 64
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.60 E-value=5.5e-15 Score=119.42 Aligned_cols=120 Identities=15% Similarity=0.115 Sum_probs=74.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccC-CCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNS-FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~-~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
..++|+++|.+|+|||||+|++++........ ..+.+...........+..+.+|||||..+.... .. .+.
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~---~~----~~~- 76 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL---AP----MYY- 76 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG---HH----HHH-
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhh---hH----Hhc-
Confidence 46899999999999999999999765432221 1111222222222223457899999997432211 11 111
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++....-.....++..+...... ..|+++|+||+|+.+
T Consensus 77 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 77 -RGAQAAIVVYDITNEESFARAKNWVKELQRQASP--NIVIALSGNKADLAN 125 (170)
T ss_dssp -TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGG
T ss_pred -cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCcc
Confidence 6899999998876522111223455555555433 379999999999853
No 65
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.60 E-value=2.4e-14 Score=118.44 Aligned_cols=121 Identities=18% Similarity=0.183 Sum_probs=74.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe--EEEEEeCCCCCCCCcCcHHHHHHHHh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKG 111 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~viDTPG~~~~~~~~~~~~~~i~~ 111 (298)
++++++|+++|.+|+|||||+|+|++.... ....+++..........++. .+.+|||||..+... ....
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~ 88 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQ 88 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------------
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEECCEEEEEEEEECCChHHHHH-------HHHH
Confidence 456799999999999999999999987542 22223333333334455553 589999999753221 1111
Q ss_pred hhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 112 ~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
++ ..+|++++|++++..........++..+...... ...|+++|+||+|+.+
T Consensus 89 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 89 YM--RTGEGFLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPT 140 (190)
T ss_dssp -C--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred hh--CcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCc
Confidence 22 5889999998887532111223445555554431 1379999999999853
No 66
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.60 E-value=6.7e-15 Score=120.41 Aligned_cols=121 Identities=12% Similarity=0.069 Sum_probs=71.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC---CeEEEEEeCCCCCCCCcCcHHHHHHHHh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG---GFTLNIIDTPGLVEAGYVNYQALELIKG 111 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---g~~l~viDTPG~~~~~~~~~~~~~~i~~ 111 (298)
...++|+++|.+|+|||||+|++++...... ..+..+..........+ ...+.+|||||..... .....
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~ 77 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQ-YKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ-------SLGVA 77 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTT-C---CCCSCEEEEECCSSSCCEEEEEECCC-----------------C
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcc-cCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh-------hhhHH
Confidence 3679999999999999999999998764221 11222222223333333 3589999999964321 11122
Q ss_pred hhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCC--CCCceEEEEEeCcCCC
Q 022358 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC 165 (298)
Q Consensus 112 ~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~ 165 (298)
++ ..+|++++|++++....-.....++..+...... ....|+++|+||+|+.
T Consensus 78 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 78 FY--RGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp CS--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred Hh--hcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 22 5889999998776522111223455555554431 1237999999999984
No 67
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.59 E-value=4.5e-15 Score=132.86 Aligned_cols=120 Identities=15% Similarity=0.239 Sum_probs=85.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCC-CCCcCcHHHHHHHHhh--
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLV-EAGYVNYQALELIKGF-- 112 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~-~~~~~~~~~~~~i~~~-- 112 (298)
+..+|+++|++|+|||||+|+|+|.....++..+++|..........++.++.++||||+. ... ....+.+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~---~~l~~~~~~~~~ 83 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK---RAINRLMNKAAS 83 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH---HHHHHHHTCCTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccch---hhHHHHHHHHHH
Confidence 3458999999999999999999999876666666677665555567788899999999985 111 1111112111
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.....+|++++|++.+. ++..+..+.+.+... ..|+++|+||+|..
T Consensus 84 ~~l~~~D~vl~Vvd~~~--~~~~~~~i~~~l~~~-----~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR--WTPDDEMVLNKLREG-----KAPVILAVNKVDNV 129 (301)
T ss_dssp SCCCCEEEEEEEEETTC--CCHHHHHHHHHHHSS-----SSCEEEEEESTTTC
T ss_pred HHHhcCCEEEEEEeCCC--CCHHHHHHHHHHHhc-----CCCEEEEEECcccC
Confidence 12267899999976653 777776666555432 28999999999984
No 68
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.59 E-value=9.6e-15 Score=122.61 Aligned_cols=123 Identities=15% Similarity=0.149 Sum_probs=75.1
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHH
Q 022358 32 QENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELI 109 (298)
Q Consensus 32 ~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i 109 (298)
+.....++|+|+|.+|+|||||+|++++..... ...+..+.........+++ ..+.+|||||..+. ....
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~ 95 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSE-RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF-------RTIT 95 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCGGG-------HHHH
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhH-------HHHH
Confidence 334456899999999999999999999876422 1111111222233445555 58999999997421 1112
Q ss_pred HhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 110 KGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 110 ~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..++ ..+|++++|++++...--+.-..++..+......+ .|+++|+||+|+.+
T Consensus 96 ~~~~--~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~ 148 (201)
T 2hup_A 96 QSYY--RSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN--IVQLLIGNKSDLSE 148 (201)
T ss_dssp HHHH--TTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGG
T ss_pred HHHH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCcccc
Confidence 2222 68999999988764221111234556666554333 89999999999853
No 69
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.59 E-value=6.6e-15 Score=122.01 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=75.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..++|+|+|.+|+|||||+|++++....... .+..+........... +..+.+|||||......... .++
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~~ 92 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAF-VSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITT-------AYY 92 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSC-CCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGG-------GGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCc-CCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHH-------Hhc
Confidence 4589999999999999999999987643221 1111212222223333 45789999999765433221 111
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++.....+....++..+...... ..|+++|+||+|+.+
T Consensus 93 --~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 93 --RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWD--NAQVILVGNKCDLED 141 (189)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGG
T ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECccccc
Confidence 6899999998876522111223455666655322 289999999999853
No 70
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.59 E-value=1.1e-14 Score=121.02 Aligned_cols=120 Identities=14% Similarity=0.100 Sum_probs=76.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
...++|+|+|.+|+|||||+|++++........ +..+..........++ ..+.+|||||..........+ +
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~---~--- 91 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSY---Y--- 91 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHH---H---
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCC-CcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHH---h---
Confidence 356899999999999999999999876533221 1222222233344555 478999999976543322222 1
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++....-..-..++..+...... ..|+++|+||+|+.+
T Consensus 92 ---~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 92 ---RGAAGALLVYDITRRETFNHLTSWLEDARQHSSS--NMVIMLIGNKSDLES 140 (191)
T ss_dssp ---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGG
T ss_pred ---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccCC
Confidence 5899999998876522111123455566555433 389999999999853
No 71
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.59 E-value=1.4e-15 Score=143.85 Aligned_cols=123 Identities=20% Similarity=0.242 Sum_probs=79.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcC-cHHHHHHHHhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV-NYQALELIKGFL 113 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~-~~~~~~~i~~~~ 113 (298)
+...+|+++|.+|||||||+|+|+|...+.+...++.|.........+.+..+.+|||||+...... .+++......++
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 4567999999999999999999999987777778888888777777888899999999998743322 223333333333
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++|+|++... .++..+..+.+.+++. .+|+++|+||+|+.
T Consensus 101 --~~ad~il~VvD~~~-~~~~~d~~l~~~l~~~-----~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 101 --DEADVIIFMVNGRE-GVTAADEEVAKILYRT-----KKPVVLAVNKLDNT 144 (456)
T ss_dssp --HHCSEEEEEEESSS-CSCHHHHHHHHHHTTC-----CSCEEEEEECC---
T ss_pred --hhCCEEEEEEeCCC-CCChHHHHHHHHHHHc-----CCCEEEEEECccch
Confidence 57899999966443 4788887777776652 38999999999985
No 72
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.59 E-value=2.1e-14 Score=117.80 Aligned_cols=121 Identities=18% Similarity=0.216 Sum_probs=77.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..++|+++|.+|+|||||+|++++... .....+++..........++ ..+.+|||||..+.......+
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~-------- 74 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF--VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTY-------- 74 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGG--------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHH--------
Confidence 468999999999999999999996653 22333333333344445566 467999999987654322211
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPD 168 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~ 168 (298)
...+|++++|++++....-+.-..++..+.+.... ...|+++|+||+|+.+..
T Consensus 75 -~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~ 127 (181)
T 3t5g_A 75 -SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMER 127 (181)
T ss_dssp -TTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTC
T ss_pred -HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcc
Confidence 15789999998887522111123344445444331 237999999999985433
No 73
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.59 E-value=2.7e-15 Score=123.35 Aligned_cols=120 Identities=13% Similarity=0.153 Sum_probs=57.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..++|+++|.+|+|||||+|++++.... ....+..+.........+++ ..+.+|||||..+.... ...+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~- 77 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFN-STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-------TTAY- 77 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----------------CCTT-
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhh-------HHHH-
Confidence 4689999999999999999999976532 11112222223333445566 68999999997532211 1111
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 167 (298)
...+|++++|++++...--..-..++..+...... ..|+++|+||+|+.+.
T Consensus 78 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~ 128 (183)
T 2fu5_C 78 -YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA--DVEKMILGNKCDVNDK 128 (183)
T ss_dssp -TTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEEC--CCSC
T ss_pred -HhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECccCCcc
Confidence 15889999998877522111223455556555333 3799999999999543
No 74
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.59 E-value=1.1e-14 Score=120.61 Aligned_cols=118 Identities=12% Similarity=0.154 Sum_probs=75.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..+.++|+|+|.+|+|||||+|++++..... .. ..|...........+..+.+|||||..+ +......++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~--~~t~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~ 88 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNE-DM--IPTVGFNMRKITKGNVTIKLWDIGGQPR-------FRSMWERYC 88 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCC-SC--CCCCSEEEEEEEETTEEEEEEEECCSHH-------HHTTHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCC-cc--CCCCceeEEEEEeCCEEEEEEECCCCHh-------HHHHHHHHH
Confidence 3457999999999999999999999876431 11 1222333344567788999999999632 111222222
Q ss_pred hcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++... +.. ...++..+..... ....|+++|+||+|+.
T Consensus 89 --~~~d~ii~v~D~~~~~s~~~-~~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 137 (188)
T 1zd9_A 89 --RGVSAIVYMVDAADQEKIEA-SKNELHNLLDKPQ-LQGIPVLVLGNKRDLP 137 (188)
T ss_dssp --TTCSEEEEEEETTCGGGHHH-HHHHHHHHHTCGG-GTTCCEEEEEECTTST
T ss_pred --ccCCEEEEEEECCCHHHHHH-HHHHHHHHHhCcc-cCCCCEEEEEECCCCc
Confidence 6899999998876522 211 1223333322110 1238999999999995
No 75
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.59 E-value=2.3e-14 Score=120.06 Aligned_cols=121 Identities=14% Similarity=0.085 Sum_probs=75.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
...++|+|+|.+|+|||||+|+|++..... ...+..+..........++ ..+.+|||||......... .+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~ 77 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGV-------AF 77 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCC-------GG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHH-------HH
Confidence 367999999999999999999999876432 1122222333333344444 5789999999754322211 11
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCC--CCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~ 165 (298)
+ ..+|++++|++++.......-..++..+...... ....|+++|+||+|+.
T Consensus 78 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 78 Y--RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp G--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred H--hCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 1 5889999998776522111123445555554421 1237999999999985
No 76
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.59 E-value=7.3e-15 Score=124.51 Aligned_cols=119 Identities=16% Similarity=0.155 Sum_probs=77.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE-CC--eEEEEEeCCCCCCCCcCcHHHHHHHHh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GG--FTLNIIDTPGLVEAGYVNYQALELIKG 111 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g--~~l~viDTPG~~~~~~~~~~~~~~i~~ 111 (298)
...++|+|+|.+|+|||||+|+|++......... ..+.......... .+ ..+.+|||||..........+.
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~----- 82 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNA-TVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYY----- 82 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEET-TTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHH-----
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-ccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHh-----
Confidence 3579999999999999999999998764321111 1111111112222 22 5799999999865443333221
Q ss_pred hhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 112 ~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++..........++..+....+.+ .|+++|+||+|+.
T Consensus 83 ----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~ 130 (218)
T 4djt_A 83 ----IGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIK 130 (218)
T ss_dssp ----TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC
T ss_pred ----hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCc
Confidence 57999999988875321122235666676666544 7999999999985
No 77
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.59 E-value=2.6e-15 Score=141.79 Aligned_cols=121 Identities=22% Similarity=0.292 Sum_probs=80.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHH-HHHHHhhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA-LELIKGFLL 114 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~-~~~i~~~~~ 114 (298)
..++|+++|.+|+|||||+|+|++.+...++..+++|..........+|.++.+|||||+.+.....+.. .+.... .
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~--~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQ--A 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------C--C
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhh--h
Confidence 3579999999999999999999998776677777777766555677789999999999996543221111 111111 2
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
...+|++++|++.+. ..+..+..+++.+. . +|+++|+||+|+.+
T Consensus 301 ~~~aD~vl~VvD~s~-~~~~~~~~i~~~l~----~---~piivV~NK~Dl~~ 344 (462)
T 3geh_A 301 ANTADLVLLTIDAAT-GWTTGDQEIYEQVK----H---RPLILVMNKIDLVE 344 (462)
T ss_dssp CCSCSEEEEEEETTT-CSCHHHHHHHHHHT----T---SCEEEEEECTTSSC
T ss_pred hhcCCEEEEEeccCC-CCCHHHHHHHHhcc----C---CcEEEEEECCCCCc
Confidence 368999999977765 46666655555442 2 69999999999853
No 78
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.59 E-value=1.8e-14 Score=118.29 Aligned_cols=115 Identities=15% Similarity=0.090 Sum_probs=72.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
.+.++|+++|.+|+|||||+|++++.......+..+ .......+++..+.+|||||..+...... .+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~- 83 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIG----FNVETLSYKNLKLNVWDLGGQTSIRPYWR-------CYY- 83 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTT----CCEEEEEETTEEEEEEEEC----CCTTGG-------GTT-
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCc----cceEEEEECCEEEEEEECCCCHhHHHHHH-------HHh-
Confidence 468999999999999999999999876533322222 22334556788999999999865432211 111
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCC--CCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++... +- ..+...+...... ....|+++|+||+|+.
T Consensus 84 -~~~d~ii~v~d~~~~~-s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (183)
T 1moz_A 84 -ADTAAVIFVVDSTDKD-RM--STASKELHLMLQEEELQDAALLVFANKQDQP 132 (183)
T ss_dssp -TTEEEEEEEEETTCTT-TH--HHHHHHHHHHTTSSTTSSCEEEEEEECTTST
T ss_pred -ccCCEEEEEEECCCHH-HH--HHHHHHHHHHHcChhhCCCeEEEEEECCCCC
Confidence 5889999998776422 21 1222333333321 1348999999999985
No 79
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.58 E-value=1.9e-14 Score=119.78 Aligned_cols=121 Identities=12% Similarity=0.127 Sum_probs=75.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
.....+|+|+|.+|+|||||+|++++.....+...+ |...........+..+.+|||||....... ...++
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~ 84 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA--TVGYNVETFEKGRVAFTVFDMGGAKKFRGL-------WETYY 84 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC--CSSEEEEEEEETTEEEEEEEECCSGGGGGG-------GGGGC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc--ccceeEEEEEeCCEEEEEEECCCCHhHHHH-------HHHHH
Confidence 446789999999999999999999998764422111 222334445678889999999998532211 11122
Q ss_pred hcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhC------CCCCceEEEEEeCcCCCC
Q 022358 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFG------KQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~------~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++... +... ..++..+..... .....|+++|+||+|+.+
T Consensus 85 --~~~d~ii~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 141 (199)
T 4bas_A 85 --DNIDAVIFVVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG 141 (199)
T ss_dssp --TTCSEEEEEEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT
T ss_pred --hcCCEEEEEEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCC
Confidence 6899999998887532 2222 233333322210 001389999999999953
No 80
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.58 E-value=2.3e-14 Score=115.44 Aligned_cols=113 Identities=13% Similarity=0.178 Sum_probs=71.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 117 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~ 117 (298)
++|+++|.+|+|||||+|++++..... ..+ |...........+..+.+|||||..+. ......+. ..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~--~~ 67 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQDKI-------RPLWRHYF--QN 67 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC--CCC--CSSCCEEEEECSSCEEEEEECCCCGGG-------HHHHHHHT--TT
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc--ccC--cCceeEEEEEECCEEEEEEEcCCChhh-------HHHHHHHh--cc
Confidence 589999999999999999999766422 112 222223345567889999999998421 11122222 68
Q ss_pred CCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 118 IDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 118 ~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+|++++|++++... +... ..++..+.... .....|+++|+||+|+.
T Consensus 68 ~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~-~~~~~piilv~nK~Dl~ 114 (164)
T 1r8s_A 68 TQGLIFVVDSNDRERVNEA-REELMRMLAED-ELRDAVLLVFANKQDLP 114 (164)
T ss_dssp CSEEEEEEETTCGGGHHHH-HHHHHHHHTCG-GGTTCEEEEEEECTTST
T ss_pred CCEEEEEEECCCHHHHHHH-HHHHHHHHhch-hhcCCeEEEEEECcCCc
Confidence 99999998876522 2211 22333222211 01237999999999995
No 81
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.58 E-value=7.3e-15 Score=123.19 Aligned_cols=121 Identities=17% Similarity=0.134 Sum_probs=73.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKG 111 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~ 111 (298)
....++|+|+|.+|+|||||+|++++....... .+..+..........++ ..+.+|||||..........
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~------- 93 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDS-NHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRS------- 93 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHH-------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccC-CCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHH-------
Confidence 345799999999999999999999987653221 22222223333444555 58999999996432221111
Q ss_pred hhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 112 ~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
++ ..+|++++|++++....-..-..++..+...... ..|+++|+||+|+.+
T Consensus 94 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 94 YY--RGAAGALLVYDITSRETYNSLAAWLTDARTLASP--NIVVILCGNKKDLDP 144 (200)
T ss_dssp HH--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCT--TCEEEEEEECGGGGG
T ss_pred Hh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCCccc
Confidence 11 5899999998877522111123455555554433 389999999999853
No 82
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.58 E-value=4.9e-15 Score=121.74 Aligned_cols=121 Identities=15% Similarity=0.195 Sum_probs=77.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKG 111 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~ 111 (298)
....++|+|+|.+|+|||||+|++++.... ....+++..........++ ..+.+|||||..+.. ... ..
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~~~---~~ 85 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA----AIR---DN 85 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCC--CSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH----HHH---HH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCC--CcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH----HHH---HH
Confidence 346799999999999999999999987642 2233333333333445555 478999999975422 111 11
Q ss_pred hhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 112 ~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
++ ..+|++++|++++....-.....++..+...... ...|+++|+||+|+.+
T Consensus 86 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 86 YF--RSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLED 137 (187)
T ss_dssp HH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGG
T ss_pred Hh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 12 4689999998877522111223455555555431 1379999999999853
No 83
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.58 E-value=6.8e-15 Score=123.30 Aligned_cols=120 Identities=16% Similarity=0.205 Sum_probs=73.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE--EEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVS--RSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~--~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
+.++|+|+|.+|+|||||+|++++...... ...++....... ....+..+.+|||||..+.......+
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~-------- 92 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEG--YDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSF-------- 92 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSC--CCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGG--------
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCCC--CCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHH--------
Confidence 579999999999999999999998765322 222222222222 23345688999999986544332211
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 167 (298)
...+|++++|++++....-..-..++..+..... ....|+++|+||+|+.+.
T Consensus 93 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~ 144 (201)
T 3oes_A 93 -IIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSPE 144 (201)
T ss_dssp -TTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGG
T ss_pred -HhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCccc
Confidence 1589999999887752211112234444433322 123799999999998533
No 84
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.58 E-value=8e-15 Score=121.70 Aligned_cols=121 Identities=15% Similarity=0.192 Sum_probs=70.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
...++|+++|.+|+|||||+|+|++........ +..+. ....+.+..+.+|||||..........+ ++...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~----~~~~~-~~~~~~~~~~~l~Dt~G~~~~~~~~~~~---~~~~~- 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV----SQEPL-SAADYDGSGVTLVDFPGHVKLRYKLSDY---LKTRA- 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHH---HHHHG-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccc----cCCCc-eeeeecCCeEEEEECCCCchHHHHHHHH---HHhhc-
Confidence 456899999999999999999999876422100 00000 1112356788999999997654333222 22211
Q ss_pred cCCCCEEEEEEeCC-CCC-CCHHHHHHHHHHHHHhC--CCCCceEEEEEeCcCCCC
Q 022358 115 NKTIDVLLYADRLD-AYR-VDDLDRQIIKAVTGTFG--KQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 115 ~~~~d~vl~v~~~d-~~~-~~~~~~~~l~~l~~~~~--~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++ ... +... ..++..+..... .....|+++|+||+|+.+
T Consensus 117 -~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 170 (193)
T 2ged_A 117 -KFVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFT 170 (193)
T ss_dssp -GGEEEEEEEEETTCCHHHHHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred -ccCCEEEEEEECCCCchhHHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence 4689999997776 211 1111 122322222211 112389999999999963
No 85
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.58 E-value=1.4e-14 Score=121.24 Aligned_cols=121 Identities=15% Similarity=0.185 Sum_probs=77.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe--EEEEEeCCCCCCCCcCcHHHHHHHHh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKG 111 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~viDTPG~~~~~~~~~~~~~~i~~ 111 (298)
....++|+|+|.+|+|||||+|++++.... ....+++..........++. .+.+|||||..+.. ... ..
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~~~---~~ 81 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA----AIR---DN 81 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCC--TTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH----HHH---HH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH----HHH---HH
Confidence 346799999999999999999999987642 22333333333344455554 78999999975432 111 11
Q ss_pred hhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 112 ~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
+. ..+|++++|++++....-.....++..+..... ....|+++|+||+|+.+
T Consensus 82 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 82 YF--RSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED 133 (206)
T ss_dssp HH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGG
T ss_pred HH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccc
Confidence 11 368999999888753211122345555555442 12379999999999853
No 86
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.58 E-value=1.1e-14 Score=130.72 Aligned_cols=126 Identities=18% Similarity=0.256 Sum_probs=74.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccc-----cCCCCcceeEE---------------------------------
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTV-----NSFQSEALRPV--------------------------------- 76 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~-----~~~~~~t~~~~--------------------------------- 76 (298)
....+|+|+|.+|+|||||+|+|+|...... +..+..+....
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 4567999999999999999999999875221 11110000000
Q ss_pred --------------------EEE-EEECCeEEEEEeCCCCCCCC------cCcHHHHHHHHhhhhcCCCCEEEEEEeCCC
Q 022358 77 --------------------MVS-RSKGGFTLNIIDTPGLVEAG------YVNYQALELIKGFLLNKTIDVLLYADRLDA 129 (298)
Q Consensus 77 --------------------~~~-~~~~g~~l~viDTPG~~~~~------~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~ 129 (298)
... ....+.++++|||||+.+.. .....+......++ ..+|++++|++...
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~iilvvd~~~ 179 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYI--KKQNAIIVAVTPAN 179 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHH--HSTTEEEEEEEESS
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHH--cCCCeEEEEEEecC
Confidence 000 11134679999999997522 12223333333344 58899998866533
Q ss_pred CCCCHHH-HHHHHHHHHHhCCCCCceEEEEEeCcCCCCC
Q 022358 130 YRVDDLD-RQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (298)
Q Consensus 130 ~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 167 (298)
..+...+ ..+++.+.. ...|+++|+||+|+.+.
T Consensus 180 ~~~~~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 180 TDLANSDALQLAKEVDP-----EGKRTIGVITKLDLMDK 213 (315)
T ss_dssp SCSTTCSHHHHHHHHCS-----SCSSEEEEEECTTSSCS
T ss_pred cchhhhHHHHHHHHhCC-----CCCcEEEEEcCcccCCc
Confidence 2343333 345554432 23899999999999643
No 87
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.58 E-value=4.3e-15 Score=140.87 Aligned_cols=115 Identities=23% Similarity=0.397 Sum_probs=88.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCC-CCCcCc-----HHHHHHHH
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLV-EAGYVN-----YQALELIK 110 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~-~~~~~~-----~~~~~~i~ 110 (298)
.++|+++|.+|+|||||+|+|++.+...++..+++|.........++|.++.+|||||+. +..... ......+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~- 321 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI- 321 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH-
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh-
Confidence 489999999999999999999998876778888888877777778899999999999997 543211 1223333
Q ss_pred hhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 111 GFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 111 ~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++|+|++.+. ..+..+.++++.+ . .+|+++|+||+|+.
T Consensus 322 -----~~aD~vl~VvD~s~-~~s~~~~~il~~l----~---~~piivV~NK~DL~ 363 (482)
T 1xzp_A 322 -----EKADIVLFVLDASS-PLDEEDRKILERI----K---NKRYLVVINKVDVV 363 (482)
T ss_dssp -----HHCSEEEEEEETTS-CCCHHHHHHHHHH----T---TSSEEEEEEECSSC
T ss_pred -----hcccEEEEEecCCC-CCCHHHHHHHHHh----c---CCCEEEEEECcccc
Confidence 47899999977654 3455555555433 2 27999999999995
No 88
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.58 E-value=3.1e-15 Score=139.60 Aligned_cols=124 Identities=20% Similarity=0.297 Sum_probs=84.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe-EEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF-TLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
...++|+++|.+|+|||||+|+|++.....++..+++|.........+.+. ++.+|||||+.+.........+....++
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l 111 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVF 111 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHH
Confidence 356899999999999999999999998766667777777777777777765 8999999999876543322222222222
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPD 168 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~ 168 (298)
..+|++++|+ |. ...+.+..++..+.+.. .|+++|+||+|+.+..
T Consensus 112 --~~aD~vllVv--D~-~~~~~~~~~l~~l~~~~-----~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 112 --YRADCGILVT--DS-APTPYEDDVVNLFKEME-----IPFVVVVNKIDVLGEK 156 (423)
T ss_dssp --TSCSEEEEEC--SS-SCCHHHHHHHHHHHHTT-----CCEEEECCCCTTTTCC
T ss_pred --hcCCEEEEEE--eC-CChHHHHHHHHHHHhcC-----CCEEEEEeCcCCCCcc
Confidence 6899999994 54 55677778888887762 8999999999996433
No 89
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.58 E-value=3.1e-14 Score=117.90 Aligned_cols=121 Identities=12% Similarity=0.137 Sum_probs=76.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHH-HHHHh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQAL-ELIKG 111 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~-~~i~~ 111 (298)
.+.++|+|+|.+|+|||||+|++++....... .+..+..........++ ..+.+|||||..+ +. .....
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~ 89 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT-EATIGVDFRERAVDIDGERIKIQLWDTAGQER-------FRKSMVQH 89 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC-CCCCSCCEEEEEEEETTEEEEEEEEECCCSHH-------HHTTTHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCCcceEEEEEEEEECCEEEEEEEEECCCchh-------hhhhhhHH
Confidence 45699999999999999999999977643221 12222222333444555 5789999999632 11 11122
Q ss_pred hhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 112 ~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
++ ..+|++++|++++.......-..++..+..... ....|+++|+||+|+.+
T Consensus 90 ~~--~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 141 (189)
T 1z06_A 90 YY--RNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRS 141 (189)
T ss_dssp HH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGG
T ss_pred Hh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 22 689999999877642211122345555655542 12389999999999853
No 90
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.58 E-value=2e-15 Score=141.93 Aligned_cols=122 Identities=20% Similarity=0.237 Sum_probs=75.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcC-cHHHHHHHHhhhhc
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV-NYQALELIKGFLLN 115 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~-~~~~~~~i~~~~~~ 115 (298)
..+|+++|.+|||||||+|+|+|...+.++..+++|.........+.+..+.+|||||+...... .+.+......+.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~-- 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM-- 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHH--
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHH--
Confidence 36899999999999999999999887777788888887777777888899999999999633211 112222222222
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++... ..+..+..+.+.+++. .+|+++|+||+|+.+
T Consensus 81 ~~ad~il~vvD~~~-~~~~~d~~~~~~l~~~-----~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 81 DEADVIIFMVNGRE-GVTAADEEVAKILYRT-----KKPVVLAVNKLDNTE 125 (436)
T ss_dssp HHCSEEEEEEETTT-CSCHHHHHHHHHHTTC-----CSCEEEEEECCCC--
T ss_pred HhCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECccCcc
Confidence 57999999976654 4677776666555432 389999999999853
No 91
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.58 E-value=2.3e-14 Score=118.28 Aligned_cols=121 Identities=17% Similarity=0.278 Sum_probs=81.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
++.++|+++|.+|+|||||+|+|++... .++..++.|..........++..+.+|||||..+....... ......+..
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSID-EIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHH-HHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHH-HHHHHHHHh
Confidence 4568999999999999999999999764 44555666666666667788999999999999765322110 011112222
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
...+|++++|++.. .+ +....++..+.+ . ..|+++|+||+|+.
T Consensus 83 ~~~~~~~i~v~d~~--~~-~~~~~~~~~~~~---~--~~piilv~nK~Dl~ 125 (188)
T 2wjg_A 83 NEKPDLVVNIVDAT--AL-ERNLYLTLQLME---M--GANLLLALNKMDLA 125 (188)
T ss_dssp HHCCSEEEEEEEGG--GH-HHHHHHHHHHHT---T--TCCEEEEEECHHHH
T ss_pred ccCCCEEEEEecch--hH-HHHHHHHHHHHh---c--CCCEEEEEEhhhcc
Confidence 24689999996554 22 222334444433 2 37999999999974
No 92
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.58 E-value=3.4e-14 Score=114.98 Aligned_cols=119 Identities=16% Similarity=0.101 Sum_probs=68.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCc-CcHHHHHHHHhhh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGY-VNYQALELIKGFL 113 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~-~~~~~~~~i~~~~ 113 (298)
.++|+++|.+|+|||||+|++++........ ...+..........++ ..+.+|||||..+... ....+ +
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~---~---- 73 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHE-MENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHC---L---- 73 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC--------CHH---H----
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccccc-CCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhh---h----
Confidence 4799999999999999999999765433222 2223333334444555 4678999999865321 11111 1
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++....-..-..++..+...... ...|+++|+||+|+.+
T Consensus 74 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 74 --QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLAR 123 (169)
T ss_dssp --HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGG
T ss_pred --ccCCEEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhh
Confidence 3589999998887632111123444455444321 1389999999999853
No 93
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.57 E-value=2.6e-15 Score=136.53 Aligned_cols=120 Identities=18% Similarity=0.195 Sum_probs=83.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC-eEEEEEeCCCCCCCC----cCcHHHHHHHHhhh
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEAG----YVNYQALELIKGFL 113 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~l~viDTPG~~~~~----~~~~~~~~~i~~~~ 113 (298)
+|+|+|.+|||||||+|+|++... .++.++.+|..+......+.+ ..++++||||+.+.. .....+++.+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i---- 234 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI---- 234 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH----
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCC-ccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHH----
Confidence 688999999999999999998765 456667777777666666664 789999999985422 1223444443
Q ss_pred hcCCCCEEEEEEeCCCC---CCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAY---RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~---~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.++|++++|++++.. ........++..+.........+|+++|+||+|+.
T Consensus 235 --~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~ 287 (342)
T 1lnz_A 235 --ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP 287 (342)
T ss_dssp --HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred --HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC
Confidence 368999999877641 21112234555665543222348999999999984
No 94
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=1.7e-14 Score=119.52 Aligned_cols=120 Identities=16% Similarity=0.069 Sum_probs=73.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
...++|+|+|.+|+|||||+|+|++...... ..+..+.........+. +..+.+|||||..+...... ..+
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---~~~--- 85 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPE-LAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTP---SYY--- 85 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTT-CCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHH---HHH---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCcc-CCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhH---HHh---
Confidence 3568999999999999999999998764221 11221222222233333 35789999999754332221 112
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++..........++..+..... ....|+++|+||+|+.
T Consensus 86 ---~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 86 ---RGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKE 134 (195)
T ss_dssp ---TTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSS
T ss_pred ---ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCc
Confidence 589999999877642111111233444433321 1247999999999984
No 95
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.57 E-value=4.7e-14 Score=127.76 Aligned_cols=115 Identities=11% Similarity=0.140 Sum_probs=74.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
+.++|+|+|.+|+|||||+|+|++...... .+ |...........+..+.+|||||.......... .+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~--~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~---~~------ 230 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH---YF------ 230 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE--EE--ETTEEEEEEEETTEEEEEEECC-----CCSHHH---HH------
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc--cc--ccceEEEEEecCcEEEEEEECCCCHhHHHHHHH---Hh------
Confidence 456999999999999999999998874322 22 444445566778899999999996544332221 11
Q ss_pred CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++... +......+...+..... ...|+++|+||+|+.
T Consensus 231 ~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~--~~~piilV~NK~Dl~ 279 (329)
T 3o47_A 231 QNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL--RDAVLLVFANKQDLP 279 (329)
T ss_dssp TTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGG--TTCEEEEEEECTTST
T ss_pred ccCCEEEEEEECCchHHHHHHHHHHHHHHhhhcc--CCCeEEEEEECccCC
Confidence 5889999998887532 32222223333322211 137999999999985
No 96
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.57 E-value=5.8e-14 Score=128.56 Aligned_cols=125 Identities=19% Similarity=0.257 Sum_probs=88.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcH-HH-HHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY-QA-LELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~-~~-~~~i~~~ 112 (298)
....+|+++|.+|+|||||+|+|++... .++..+..|...........+..+.+|||||+.+...... .. ...+..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~- 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILA- 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHG-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHH-
Confidence 4678999999999999999999999874 4555666677666666677788999999999976432211 11 112221
Q ss_pred hhcCCCCEEEEEEeCCCCC-CCHH-HHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYR-VDDL-DRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~-~~~~-~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
....+|++++|++++... ++.. ...++..+...++ ..|+++|+||+|+.
T Consensus 243 -~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~ 293 (357)
T 2e87_A 243 -LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVA 293 (357)
T ss_dssp -GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTC
T ss_pred -HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccC
Confidence 124689999997655422 3333 3567777777654 38999999999985
No 97
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.56 E-value=2.3e-14 Score=119.73 Aligned_cols=118 Identities=19% Similarity=0.191 Sum_probs=75.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe--EEEEEeCCCCCCCCcCcHHHHHHHHh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKG 111 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~viDTPG~~~~~~~~~~~~~~i~~ 111 (298)
....++|+++|.+|+|||||+|++++... .....+++..........++. .+.+|||||..........
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~------- 87 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGY--PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPL------- 87 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGG-------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHh-------
Confidence 34679999999999999999999998763 223333343333444556664 5679999998654432211
Q ss_pred hhhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 112 FLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 112 ~~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+ ...+|++++|++++... +......++..+..... ..|+++|+||+|+.
T Consensus 88 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~ 137 (201)
T 2q3h_A 88 C--YTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLR 137 (201)
T ss_dssp G--GTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGG
T ss_pred h--cCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhh
Confidence 1 16899999998887522 22211245666666543 38999999999985
No 98
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.56 E-value=1.5e-14 Score=127.62 Aligned_cols=119 Identities=17% Similarity=0.222 Sum_probs=81.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
..++|+++|.+|+|||||+|+|+|... .++.+++.|.......... +..+.+|||||.........+ ....+.++..
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~-e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPE-AKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHH-HHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChH-HHHHHHHHhc
Confidence 357999999999999999999999864 5677777777665555544 778999999999865422211 1122333333
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++.+. . +....+...+.+. ..|+++|+||+|+.
T Consensus 79 ~~~d~vi~V~D~t~--~-e~~~~~~~~l~~~-----~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 79 QRADSILNVVDATN--L-ERNLYLTTQLIET-----GIPVTIALNMIDVL 120 (272)
T ss_dssp TCCSEEEEEEEGGG--H-HHHHHHHHHHHHT-----CSCEEEEEECHHHH
T ss_pred CCCCEEEEEecCCc--h-HhHHHHHHHHHhc-----CCCEEEEEEChhhC
Confidence 57999999966543 2 2223344444442 38999999999984
No 99
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=3e-14 Score=118.76 Aligned_cols=119 Identities=14% Similarity=0.130 Sum_probs=75.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
...++|+++|.+|+|||||+|++++...... ...+...........++ ..+.+|||||..+ .......+
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~--- 96 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWE--YDPTLESTYRHQATIDDEVVSMEILDTAGQED----TIQREGHM--- 96 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSC--CCTTCCEEEEEEEEETTEEEEEEEEECCCCCC----CHHHHHHH---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcc--cCCCCCceEEEEEEECCEEEEEEEEECCCCCc----ccchhhhh---
Confidence 3579999999999999999999998764322 22222222222334444 5689999999865 22222222
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++....-+.-..++..+...... ...|+++|+||+|+.+
T Consensus 97 ---~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 97 ---RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDH 146 (196)
T ss_dssp ---HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGG
T ss_pred ---ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECccccc
Confidence 3679999998877522111123345555554321 2379999999999853
No 100
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.56 E-value=3e-14 Score=117.28 Aligned_cols=117 Identities=8% Similarity=0.051 Sum_probs=74.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..+.++|+++|.+|+|||||+|++++..........+.+ .....+++..+.+|||||..+..... ..++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~ 86 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN----VEEIVINNTRFLMWDIGGQESLRSSW-------NTYY 86 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSS----CEEEEETTEEEEEEEESSSGGGTCGG-------GGGG
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCcee----eEEEEECCEEEEEEECCCCHhHHHHH-------HHHh
Confidence 446799999999999999999999998763333322222 23445678999999999985432211 1122
Q ss_pred hcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++... +.. ...++..+..... ....|+++|+||+|+.
T Consensus 87 --~~~d~ii~v~D~~~~~s~~~-~~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 135 (181)
T 2h17_A 87 --TNTEFVIVVVDSTDRERISV-TREELYKMLAHED-LRKAGLLIFANKQDVK 135 (181)
T ss_dssp --TTCCEEEEEEETTCTTTHHH-HHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred --ccCCEEEEEEECCCHHHHHH-HHHHHHHHHhChh-hCCCeEEEEEECCCcc
Confidence 6889999998876532 221 1223333332210 1238999999999985
No 101
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.56 E-value=1.8e-14 Score=119.51 Aligned_cols=120 Identities=9% Similarity=0.117 Sum_probs=76.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..+.++|+++|.+|+|||||+|++++....... . ..|.........+++..+.+|||||..+..... ..++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~-~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~ 88 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-I-LPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLW-------EHYY 88 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-C-CCCSSEEEEEEECSSCEEEEEEECCSTTTGGGG-------GGGG
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCC-c-CCccceeEEEEEECCEEEEEEECCCCHHHHHHH-------HHHH
Confidence 346799999999999999999999988632222 1 223334445566778899999999975432211 1122
Q ss_pred hcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCC-CCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGK-QIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~-~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++... +... ..++..+...... ....|+++|+||+|+.
T Consensus 89 --~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 139 (190)
T 2h57_A 89 --KEGQAIIFVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLR 139 (190)
T ss_dssp --GGCSEEEEEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTST
T ss_pred --hcCCEEEEEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCcc
Confidence 5789999997776421 2211 2333333332210 0238999999999995
No 102
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.56 E-value=2.1e-14 Score=122.39 Aligned_cols=119 Identities=13% Similarity=0.068 Sum_probs=74.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..++|+|+|.+|+|||||+|+|++....... .+..+.........+++ ..+.+|||||..........+
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~-------- 82 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDS-KSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAY-------- 82 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGG--------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHH--------
Confidence 4689999999999999999999987653222 12222222333445565 588999999976543322211
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
...+|++++|++++..........++..+...... ..|+++|+||+|+.+
T Consensus 83 -~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 83 -YRGAVGALIVYDISKSSSYENCNHWLSELRENADD--NVAVGLIGNKSDLAH 132 (223)
T ss_dssp -TTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGG
T ss_pred -hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 16889999997776422111223455556555433 379999999999853
No 103
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.56 E-value=3.6e-14 Score=118.73 Aligned_cols=119 Identities=13% Similarity=0.124 Sum_probs=74.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..++|+|+|.+|+|||||+|++++....... .+..+........... +..+.+|||||..+. ......++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~ 78 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAF-VSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY-------RTITTAYY 78 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCC-CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCc-CCccceeEEEEEEEECCeEEEEEEEECCCchhh-------cchHHHhh
Confidence 3589999999999999999999988643211 1111222222233334 458899999997421 11222222
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++++....-.....++..+...... ..|+++|+||+|+.+
T Consensus 79 --~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 79 --RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVLLVGNKCDMED 127 (203)
T ss_dssp --GGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCS--SCEEEEEEECTTCTT
T ss_pred --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccCc
Confidence 5789999998876522111223455555554322 389999999999954
No 104
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=8.3e-15 Score=123.42 Aligned_cols=116 Identities=16% Similarity=0.224 Sum_probs=76.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
.+++|+++|.+|+|||||+|++++...... ..+++..........++ ..+.+|||||..+.......
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~--------- 92 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL--------- 92 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGG---------
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCc--CCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHh---------
Confidence 468999999999999999999998765322 11222222222344555 47899999998654322211
Q ss_pred hcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
....+|++++|++++... +...+..++..+...... .|+++|+||+|+.
T Consensus 93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~ 142 (207)
T 2fv8_A 93 SYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPN---VPIILVANKKDLR 142 (207)
T ss_dssp GCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTT---CCEEEEEECGGGG
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEchhhh
Confidence 126899999998887532 333334566666665432 8999999999985
No 105
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.55 E-value=6.1e-15 Score=121.19 Aligned_cols=117 Identities=18% Similarity=0.147 Sum_probs=76.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe--EEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
++.++|+++|.+|+|||||+|++++.... ....+++..........++. .+.+|||||..+...... .
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~- 72 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRP-------L- 72 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCC--SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGG-------G-
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCC--CCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHH-------H-
Confidence 45789999999999999999999976542 22222222222333444554 567999999854322111 1
Q ss_pred hhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
....+|++++|++++... +......++..+....+ ..|+++|+||+|+.
T Consensus 73 -~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 122 (186)
T 1mh1_A 73 -SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR 122 (186)
T ss_dssp -GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHH
T ss_pred -hccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccc
Confidence 126899999998877522 22222246666666543 38999999999985
No 106
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.55 E-value=6.4e-14 Score=114.54 Aligned_cols=114 Identities=14% Similarity=0.127 Sum_probs=73.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
...++|+++|.+|+|||||+|++++...... .++...........++ ..+.+|||||... . ..+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~---~~~--- 70 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVL---EKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----A---KFS--- 70 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCC---SSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----H---HHH---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCc---CCCcceeEEEEEEECCEEEEEEEEECCCCch-----h---HHH---
Confidence 4679999999999999999999998765331 1222222233344455 4678999999753 1 122
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCC-CCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGK-QIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~-~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++...--..-..+++.+...... ....|+++|+||+|+.
T Consensus 71 ---~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 71 ---GWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp ---HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred ---HhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 3689999998887522111122334445554331 1237999999999984
No 107
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.55 E-value=2.4e-14 Score=128.40 Aligned_cols=124 Identities=18% Similarity=0.115 Sum_probs=80.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE-CCeEEEEEeCCCCCCCCcCcHHHHH-HHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYVNYQALE-LIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~l~viDTPG~~~~~~~~~~~~~-~i~~~~ 113 (298)
...+|+++|.+|+|||||+|++++.....++..++.|.........+ ++..+.+|||||..+. .+.+.. ....+.
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~---~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF---MENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH---HHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH---hhhhhhhHHHHHh
Confidence 35899999999999999999999885445555566676666655554 5779999999997422 000101 111111
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHH-HHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDR-QIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.++|++++|++++... +..+. .+.+.+.+........|+++|+||+|+.
T Consensus 79 --~~ad~vi~V~D~t~~~-s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~ 128 (307)
T 3r7w_A 79 --QMVQVLIHVFDVESTE-VLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV 128 (307)
T ss_dssp --TTCSEEEEEEETTCSC-HHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred --ccCCEEEEEEECCChh-hHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence 6899999998877522 22222 3333343332111238999999999985
No 108
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.55 E-value=4.5e-14 Score=116.62 Aligned_cols=121 Identities=17% Similarity=0.102 Sum_probs=74.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEE-EEEEEEC-----------CeEEEEEeCCCCCCCCcCc
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV-MVSRSKG-----------GFTLNIIDTPGLVEAGYVN 102 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~-~~~~~~~-----------g~~l~viDTPG~~~~~~~~ 102 (298)
...++|+|+|.+|+|||||+|++++..... ...+..+.... ....... ...+.+|||||...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----- 82 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNS-KFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER----- 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG-----
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCc-CcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH-----
Confidence 346899999999999999999999865421 11111111111 2223333 35899999999832
Q ss_pred HHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 103 YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 103 ~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
+......++ ..+|++++|++++.......-..++..+..... ....|+++|+||+|+.+
T Consensus 83 --~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 83 --FRSLTTAFF--RDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLED 141 (195)
T ss_dssp --GHHHHHHTT--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGG
T ss_pred --HHHHHHHHH--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 111222222 689999999877642211112345555555432 12389999999999853
No 109
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=4.4e-14 Score=118.83 Aligned_cols=119 Identities=14% Similarity=0.184 Sum_probs=76.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
...++|+++|.+|+|||||+|++++..... ...+..+.........+++ ..+.+|||||... +......+
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~ 95 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER-------FRSITQSY 95 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-------GHHHHGGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHH
Confidence 356899999999999999999999876422 2222222233333445565 4789999999632 11122222
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
. ..+|++++|++++....-..-..++..+....... .|+++|+||+|+.
T Consensus 96 ~--~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~ 144 (201)
T 2ew1_A 96 Y--RSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLA 144 (201)
T ss_dssp S--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGG
T ss_pred H--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCc
Confidence 2 68999999988765221111234556665554332 7999999999985
No 110
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.55 E-value=6.9e-15 Score=123.08 Aligned_cols=118 Identities=16% Similarity=0.129 Sum_probs=70.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVT-VNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKG 111 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~-~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~ 111 (298)
...++|+|+|.+|+|||||+|++++..... .....+.+... .....++ ..+.+|||||..+.. ......+
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~---~~~~~~~-- 98 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQM--KTLIVDGERTVLQLWDTAGQERFR---SIAKSYF-- 98 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEE--EEEEETTEEEEEEEEECTTCTTCH---HHHHHHH--
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEE--EEEEECCEEEEEEEEECCCCcchh---hhHHHHH--
Confidence 357999999999999999999999876422 11111222222 2233444 568999999975321 1122222
Q ss_pred hhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 112 ~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++..........++..+......+ .|+++|+||+|+.
T Consensus 99 ----~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~ 146 (199)
T 2p5s_A 99 ----RKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET--VPIMLVGNKADIR 146 (199)
T ss_dssp ----HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred ----hhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccc
Confidence 46899999988765221111234555565554332 7999999999984
No 111
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.55 E-value=1.1e-14 Score=123.88 Aligned_cols=120 Identities=12% Similarity=0.135 Sum_probs=78.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCC-cccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
....++|+++|.+|+|||||+|+++... ........+.+...........+..+.+|||||..........++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~------ 85 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYY------ 85 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHH------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHH------
Confidence 4467999999999999999999955433 222233334444444433333456889999999755443332221
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++....-..-..++..+...... .|+++|+||+|+.
T Consensus 86 ---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~p~ilv~nK~Dl~ 132 (221)
T 3gj0_A 86 ---IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN---IPIVLCGNKVDIK 132 (221)
T ss_dssp ---TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTT---CCEEEEEECTTSS
T ss_pred ---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC---CCEEEEEECCccc
Confidence 5899999998887522111123456666665432 7999999999985
No 112
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.55 E-value=5e-14 Score=117.60 Aligned_cols=125 Identities=14% Similarity=0.070 Sum_probs=75.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEE-ECCeEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS-KGGFTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~-~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
....++|+++|.+|||||||+|.+++............+......... .....+.+|||||..............+
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~--- 93 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF--- 93 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH---
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc---
Confidence 446799999999999999999999986432211111111111121121 3446899999999865433220001122
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++.. +.+....+..++.+........|+++|+||+|+.
T Consensus 94 ---~~~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~ 142 (196)
T 3llu_A 94 ---RGTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGL 142 (196)
T ss_dssp ---HTCSEEEEEEETTSC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred ---ccCCEEEEEEECCCc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccC
Confidence 478999999888763 3344445555555542111238999999999985
No 113
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.54 E-value=3.2e-14 Score=118.21 Aligned_cols=116 Identities=20% Similarity=0.216 Sum_probs=77.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..++|+++|.+|+|||||+|++++.... ....+++..........++ ..+.+|||||..+...... .+
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~- 86 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP-------LS- 86 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC--CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGG-------GG-
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHH-------Hh-
Confidence 4589999999999999999999987532 2222333222333444455 5789999999865432221 11
Q ss_pred hcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
...+|++++|++++... +......++..+.+... ..|+++|+||+|+.
T Consensus 87 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 135 (194)
T 2atx_A 87 -YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLR 135 (194)
T ss_dssp -CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTST
T ss_pred -cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhc
Confidence 26899999998876522 22222246666666543 28999999999985
No 114
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.54 E-value=1.4e-14 Score=121.54 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=75.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..++|+++|.+|+|||||+|++++...... ...++..........++ ..+.+|||||..+...... .
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~-- 92 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV--YVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRP-------L-- 92 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSS--CCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGG-------G--
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcc--cCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHH-------H--
Confidence 468999999999999999999998764322 11111111112234454 4789999999754322111 1
Q ss_pred hcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
....+|++++|++++... +......++..+..... ..|+++|+||+|+.
T Consensus 93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 142 (201)
T 2gco_A 93 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLR 142 (201)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGT
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEecHHhh
Confidence 126889999998887532 33232456666666543 28999999999985
No 115
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.54 E-value=5.9e-14 Score=116.33 Aligned_cols=118 Identities=14% Similarity=0.196 Sum_probs=73.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
...++|+++|.+|+|||||+|++++.... ....+++..........++ ..+.+|||||....... . ..+
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~---~~~--- 89 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFI--SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-E---RYL--- 89 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-H---HHH---
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-H---HHH---
Confidence 46799999999999999999999987632 2223333222222334444 46889999998654332 1 122
Q ss_pred hhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCC-CCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGK-QIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~-~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++... +. .-..++..+...... ....|+++|+||+|+.
T Consensus 90 ---~~~~~~ilv~d~~~~~s~~-~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 90 ---NWAHAFLVVYSVDSRQSFD-SSSSYLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp ---TTCSEEEEEEETTCHHHHH-HHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred ---hhCCEEEEEEECCCHHHHH-HHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 5789999998887532 22 123455555554310 0127999999999985
No 116
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.54 E-value=1.7e-14 Score=122.24 Aligned_cols=117 Identities=21% Similarity=0.264 Sum_probs=67.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe--EEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
.+.++|+++|.+|+|||||+|++++..... ...+++..........++. .+.+|||||..+..... ..+
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~-------~~~ 102 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPE--SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLR-------PLF 102 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC--------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHH-------HHH
Confidence 467999999999999999999999876422 2222222222333445554 78999999975432111 111
Q ss_pred hhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
. ..+|++++|++++... +......++..+...... .|+++|+||+|+.
T Consensus 103 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~ 151 (214)
T 2j1l_A 103 Y--PDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKK---VPIIVVGCKTDLR 151 (214)
T ss_dssp ----CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSS---CCEEEEEECGGGG
T ss_pred h--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhhh
Confidence 1 5889999998876522 222222455666555432 7999999999985
No 117
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.53 E-value=2.6e-13 Score=111.82 Aligned_cols=116 Identities=18% Similarity=0.229 Sum_probs=72.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcH----HHHHHHHhhh
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY----QALELIKGFL 113 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~----~~~~~i~~~~ 113 (298)
++|+++|.+|+|||||+|++++... ..+..++.|.....+.. . .+.+|||||+.+....+. .+......+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC-ccCCCCCccceeEEEec--C--CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 5899999999999999999999874 44444555554444333 2 789999999865443332 2222222222
Q ss_pred h--cCCCCEEEEEEeCCCCCCCHH------------HHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 L--NKTIDVLLYADRLDAYRVDDL------------DRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~--~~~~d~vl~v~~~d~~~~~~~------------~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
. ...++++++|.+.+ .+... +.+++..+.. ...|+++|+||+|+.
T Consensus 77 ~~~~~~~~~v~~v~d~~--s~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~ 135 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGK--AAPEIIKRWEKRGEIPIDVEFYQFLRE-----LDIPTIVAVNKLDKI 135 (190)
T ss_dssp HHHGGGCCEEEEEEETT--HHHHHHHHHHHTTCCCHHHHHHHHHHH-----TTCCEEEEEECGGGC
T ss_pred HhhhccCCEEEEEEcch--hhhhHHHhhhccCccHHHHHHHHHHHh-----cCCceEEEeehHhcc
Confidence 2 35788888885543 22211 1122222222 128999999999985
No 118
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.53 E-value=4.2e-14 Score=120.56 Aligned_cols=123 Identities=14% Similarity=0.129 Sum_probs=76.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
.+.++|+|+|.+|||||||++++++...... ..+.............++ ..+.||||+|..........+ +
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~-~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~---~--- 83 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNT-YQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSY---I--- 83 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC-----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHH---H---
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCC-cCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHH---h---
Confidence 3568999999999999999999987653211 111111111122233333 467899999986543322221 1
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 169 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~ 169 (298)
..+|++++|++++....-..-..++..+....+.+ .|+++|.||+|+.....
T Consensus 84 ---~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~--~piilVgNK~Dl~~~r~ 135 (216)
T 4dkx_A 84 ---RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQ 135 (216)
T ss_dssp ---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGGCC
T ss_pred ---ccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCC--CeEEEEeeccchHhcCc
Confidence 68999999999886331122345667777766654 79999999999854333
No 119
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.53 E-value=7.4e-14 Score=124.13 Aligned_cols=123 Identities=20% Similarity=0.338 Sum_probs=71.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccc-----ccCCCC----------------------ccee--------------
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVT-----VNSFQS----------------------EALR-------------- 74 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~-----~~~~~~----------------------~t~~-------------- 74 (298)
..++|+|+|.+|+|||||+|+|+|..... ++..++ +|..
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 45799999999999999999999987642 121221 1110
Q ss_pred ---------EEEEEEEE-CCeEEEEEeCCCCCCCCc---Cc---HHHHHHHHhhhhcCCCC-EEEEEEeCCCCCCCHHHH
Q 022358 75 ---------PVMVSRSK-GGFTLNIIDTPGLVEAGY---VN---YQALELIKGFLLNKTID-VLLYADRLDAYRVDDLDR 137 (298)
Q Consensus 75 ---------~~~~~~~~-~g~~l~viDTPG~~~~~~---~~---~~~~~~i~~~~~~~~~d-~vl~v~~~d~~~~~~~~~ 137 (298)
........ .+.++.+|||||+..... .. ..+...+..++ ..++ ++|+|++.+. .++..+.
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~il~v~d~~~-~~~~~~~ 181 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFV--TKENCLILAVSPANS-DLANSDA 181 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHH--TSTTEEEEEEEESSS-CGGGCHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHH--cCCCeEEEEEecCCc-chhhhHH
Confidence 00011111 136899999999976321 11 12333333344 3555 4457866543 3444342
Q ss_pred -HHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 138 -QIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 138 -~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
.+++.+.. ...|+++|+||+|+.+
T Consensus 182 ~~~~~~~~~-----~~~~~i~V~NK~Dl~~ 206 (299)
T 2aka_B 182 LKIAKEVDP-----QGQRTIGVITKLDLMD 206 (299)
T ss_dssp HHHHHHHCT-----TCSSEEEEEECGGGSC
T ss_pred HHHHHHhCC-----CCCeEEEEEEccccCC
Confidence 34443332 2379999999999964
No 120
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.53 E-value=5.3e-14 Score=117.02 Aligned_cols=115 Identities=12% Similarity=0.165 Sum_probs=75.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
+..+|+++|.+|+|||||+|++++....... .|.........+++..+.+|||||......... .+ .
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~--~ 88 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQ----PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWK-------DY--F 88 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCC----CCCSCEEEEEEETTEEEEEEECCCSGGGTTSGG-------GG--C
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccc----cCCCCCeEEEEECCEEEEEEECCCCHHHHHHHH-------HH--H
Confidence 5689999999999999999999987653222 233334456677889999999999864332111 11 1
Q ss_pred CCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++... +.. ...++..+.+... ....|+++|+||+|+.
T Consensus 89 ~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 137 (190)
T 1m2o_B 89 PEVNGIVFLVDAADPERFDE-ARVELDALFNIAE-LKDVPFVILGNKIDAP 137 (190)
T ss_dssp TTCCEEEEEEETTCGGGHHH-HHHHHHHHHTCGG-GTTCCEEEEEECTTST
T ss_pred hcCCEEEEEEECCChHHHHH-HHHHHHHHHcchh-hcCCCEEEEEECCCCc
Confidence 5889999998877532 221 1233333332211 1238999999999985
No 121
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.53 E-value=1.5e-15 Score=127.16 Aligned_cols=121 Identities=15% Similarity=0.142 Sum_probs=74.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
...++|+|+|.+|+|||||+|+|++...... ..+..+.........+++ ..+.+|||||..........+
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~------- 102 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTES-YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY------- 102 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCH-HHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCC-cCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHH-------
Confidence 3468999999999999999999998764221 112223333344455565 578999999976544322211
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 167 (298)
...+|++++|++++....-+.-..++..+...... ..|+++|+||+|+.+.
T Consensus 103 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 103 --YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTK 153 (199)
T ss_dssp ---CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-C--CSEEEEC-CCSSCC--
T ss_pred --hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccC--CCCEEEEEECccCCcc
Confidence 16899999996666422111123344445443332 3899999999998543
No 122
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=1.7e-14 Score=119.72 Aligned_cols=119 Identities=13% Similarity=0.133 Sum_probs=76.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVN-SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~-~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
..++|+|+|.+|+|||||+|++++....... ...+.+...........+..+.+|||||.. .+......++
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-------~~~~~~~~~~- 93 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE-------RYRTITTAYY- 93 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHH-------HCHHHHHHHH-
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChH-------HHHHHHHHHH-
Confidence 4689999999999999999999986532211 111222333333334456789999999952 1111222222
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++....-+....++..+......+ .|+++|+||+|+.
T Consensus 94 -~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~ 141 (191)
T 3dz8_A 94 -RGAMGFILMYDITNEESFNAVQDWATQIKTYSWDN--AQVILVGNKCDME 141 (191)
T ss_dssp -TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCG
T ss_pred -ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCc
Confidence 68999999988875221122244666666654333 8999999999985
No 123
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.53 E-value=2.7e-14 Score=119.52 Aligned_cols=122 Identities=14% Similarity=0.144 Sum_probs=53.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcce-eEEEEEEEEC----CeEEEEEeCCCCCCCCcCcHHHHHHHH
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEAL-RPVMVSRSKG----GFTLNIIDTPGLVEAGYVNYQALELIK 110 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~-~~~~~~~~~~----g~~l~viDTPG~~~~~~~~~~~~~~i~ 110 (298)
..++|+|+|.+|+|||||+|++++..........+++. ........++ ...+.+|||||.. .+.....
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~~~~~~ 91 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD-------LYKEQIS 91 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH-------HHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH-------HHHHHHH
Confidence 45899999999999999999999883222222222221 2223344455 3589999999983 2222222
Q ss_pred hhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCC-CCCceEEEEEeCcCCCC
Q 022358 111 GFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGK-QIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 111 ~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~-~~~~~~ivV~tk~D~~~ 166 (298)
.+. ..+|++++|++++....-.....++..+....+. ....|+++|+||+|+.+
T Consensus 92 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 92 QYW--NGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp TTC--CCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred HHH--hhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 222 6899999998876522112223556666665431 02389999999999863
No 124
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.53 E-value=2e-14 Score=120.93 Aligned_cols=117 Identities=19% Similarity=0.171 Sum_probs=75.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe--EEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
.+.++|+++|.+|+|||||+|++++.... ....+++..........++. .+.+|||||..+...... .
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~- 97 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRP-------L- 97 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCC--C-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGG-------G-
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCC--CCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHH-------H-
Confidence 46799999999999999999999976532 22333333333334444554 456999999854322111 1
Q ss_pred hhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
....+|++++|++++... +......++..+..... ..|+++|+||+|+.
T Consensus 98 -~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 147 (204)
T 4gzl_A 98 -SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR 147 (204)
T ss_dssp -GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECHHHH
T ss_pred -HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhc
Confidence 126899999998887522 22222246666666542 28999999999985
No 125
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.52 E-value=2.5e-14 Score=118.07 Aligned_cols=117 Identities=16% Similarity=0.116 Sum_probs=73.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
...++|+++|.+|+|||||+|++++..... ....+...........+ ...+.+|||||......... .
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~- 74 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE--NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP-------L- 74 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGG-------G-
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHH-------h-
Confidence 356999999999999999999999875421 11222222222223333 35789999999753322111 1
Q ss_pred hhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
....+|++++|++++... +......++..+.+... ..|+++|+||+|+.
T Consensus 75 -~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 75 -SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLR 124 (184)
T ss_dssp -GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGG
T ss_pred -hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEcchhh
Confidence 126899999998877522 21111345556665543 28999999999985
No 126
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.52 E-value=2e-13 Score=115.21 Aligned_cols=116 Identities=13% Similarity=0.135 Sum_probs=72.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC---CeEEEEEeCCCCCCCCcCcHHHHH-HHHh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG---GFTLNIIDTPGLVEAGYVNYQALE-LIKG 111 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---g~~l~viDTPG~~~~~~~~~~~~~-~i~~ 111 (298)
..++|+++|.+|+|||||+|++++.... ...++.+. ......++ +..+.+|||||.. .+.. ....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~-------~~~~~~~~~ 74 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR--DTQTSITD--SSAIYKVNNNRGNSLTLIDLPGHE-------SLRFQLLDR 74 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC--CBCCCCSC--EEEEEECSSTTCCEEEEEECCCCH-------HHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--cccCCcce--eeEEEEecCCCccEEEEEECCCCh-------hHHHHHHHH
Confidence 5699999999999999999999987632 22222222 22234454 6789999999984 2222 1222
Q ss_pred hhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----hCCCCCceEEEEEeCcCCCC
Q 022358 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGT----FGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 112 ~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~----~~~~~~~~~ivV~tk~D~~~ 166 (298)
+. ..+|++++|++++. +........+.+... .......|+++|+||+|+.+
T Consensus 75 ~~--~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (214)
T 2fh5_B 75 FK--SSARAVVFVVDSAA--FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129 (214)
T ss_dssp HG--GGEEEEEEEEETTT--HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred HH--hhCCEEEEEEECCC--cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence 22 57899999977653 222222333333322 11222479999999999953
No 127
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.51 E-value=2.6e-14 Score=141.44 Aligned_cols=120 Identities=18% Similarity=0.254 Sum_probs=78.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEE-------EEE--------------------ECC----
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV-------SRS--------------------KGG---- 84 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~-------~~~--------------------~~g---- 84 (298)
..++|+|+|.+|+|||||+|+|+|..+..++..+++...+... ... ..+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 6799999999999999999999999876666554432110000 000 000
Q ss_pred --------------------------eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHH
Q 022358 85 --------------------------FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQ 138 (298)
Q Consensus 85 --------------------------~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~ 138 (298)
..+++|||||+.+.......+...+ ..+|++|||++.+. ..+..+..
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i------~~aD~vL~Vvda~~-~~s~~e~~ 220 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYV------NNCHAILFVMRASQ-PCTLGERR 220 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHH------HSSSEEEEEEETTS-TTCHHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHH------HhCCEEEEEEeCCC-ccchhHHH
Confidence 3689999999975332222222222 47999999977654 46666665
Q ss_pred HHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 139 IIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 139 ~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
++...... ...|+++|+||+|+..
T Consensus 221 ~l~~~l~~----~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 221 YLENYIKG----RGLTVFFLVNAWDQVR 244 (695)
T ss_dssp HHHHHTTT----SCCCEEEEEECGGGGG
T ss_pred HHHHHHHh----hCCCEEEEEECccccc
Confidence 55322111 1368999999999853
No 128
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.51 E-value=4.8e-14 Score=118.12 Aligned_cols=116 Identities=14% Similarity=0.167 Sum_probs=70.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
.+..+|+++|.+|+|||||+|++.+.......+ |.........+++..+.+|||||......... .+.
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~----t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~~- 90 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVP----TLHPTSEELTIAGMTFTTFDLGGHIQARRVWK-------NYL- 90 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------C----CCCCSCEEEEETTEEEEEEEECC----CCGGG-------GGG-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCC----CCCceeEEEEECCEEEEEEECCCcHhhHHHHH-------HHH-
Confidence 467899999999999999999999876533222 21222345567789999999999754332111 112
Q ss_pred cCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++... +... ..++..+.+... ....|+++|+||+|+.
T Consensus 91 -~~~d~~i~v~D~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 139 (198)
T 1f6b_A 91 -PAINGIVFLVDCADHERLLES-KEELDSLMTDET-IANVPILILGNKIDRP 139 (198)
T ss_dssp -GGCSEEEEEEETTCGGGHHHH-HHHHHHHHTCGG-GTTSCEEEEEECTTST
T ss_pred -hcCCEEEEEEECCCHHHHHHH-HHHHHHHHhCcc-cCCCcEEEEEECCCcc
Confidence 4789999998876522 2211 223333332210 1238999999999985
No 129
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.51 E-value=1e-13 Score=114.72 Aligned_cols=113 Identities=16% Similarity=0.064 Sum_probs=74.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe--EEEEEeCCCCCCCCcCcHHHHHHHHh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKG 111 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~viDTPG~~~~~~~~~~~~~~i~~ 111 (298)
....++|+++|.+|+|||||+|++++....... .. |.........+++. .+.+|||||..... .+
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~--~~-t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~-- 83 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE--SP-EGGRFKKEIVVDGQSYLLLIRDEGGPPELQ--------FA-- 83 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCC--CT-TCEEEEEEEEETTEEEEEEEEECSSSCCHH--------HH--
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCc--CC-CcceEEEEEEECCEEEEEEEEECCCChhhh--------ee--
Confidence 456799999999999999999999987643211 11 22223344556664 56789999984321 22
Q ss_pred hhhcCCCCEEEEEEeCCCCCCCHHH-HHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 112 FLLNKTIDVLLYADRLDAYRVDDLD-RQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 112 ~~~~~~~d~vl~v~~~d~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|++++... +..+ ..++..+..... ....|+++|+||+|+.
T Consensus 84 ----~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 84 ----AWVDAVVFVFSLEDEI-SFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAIS 132 (184)
T ss_dssp ----HHCSEEEEEEETTCHH-HHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCB
T ss_pred ----cCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence 3689999998887522 1112 335555544321 1237999999999984
No 130
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.51 E-value=2.7e-14 Score=120.46 Aligned_cols=118 Identities=16% Similarity=0.117 Sum_probs=74.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEeCCCCCCCCcCcHHHHHHHHh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKG 111 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~viDTPG~~~~~~~~~~~~~~i~~ 111 (298)
....++|+++|.+|+|||||+|++++..... ....+...........+ ...+.+|||||......... .
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~ 95 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPE--NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP-------L 95 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGG-------G
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCC--CcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHH-------h
Confidence 3467999999999999999999999876421 11222222222223333 35789999999754322111 1
Q ss_pred hhhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 112 FLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 112 ~~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
....+|++++|++++... +......++..+.+... ..|+++|+||+|+.
T Consensus 96 --~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 96 --SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLR 145 (205)
T ss_dssp --GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGG
T ss_pred --hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEechhhc
Confidence 126899999998877522 21111345566665543 28999999999985
No 131
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.51 E-value=4.8e-14 Score=129.32 Aligned_cols=117 Identities=16% Similarity=0.237 Sum_probs=85.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCc----HHHHHHHHhhh
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN----YQALELIKGFL 113 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~----~~~~~~i~~~~ 113 (298)
.+|.++|.||||||||+|+|+|... .+++++++|..+......+.+.++.++||||+.+..... .+.+..+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~-~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i---- 147 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTES-EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVA---- 147 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCC-CGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHH----
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCC-cccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHH----
Confidence 5899999999999999999999874 678899999999999999999999999999998654322 2333333
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCC-CCceEEEEEeCcCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQ-IWRKSLLVLTHAQL 164 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~-~~~~~ivV~tk~D~ 164 (298)
..+|++++|++... . -.+.+.+..-.+.++.. ..+|.++++||.|.
T Consensus 148 --~~ad~il~vvD~~~--p-~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 148 --RTCNLLFIILDVNK--P-LHHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp --HHCSEEEEEEETTS--H-HHHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred --HhcCccccccccCc--c-HHHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 47899999955542 1 12344443323333321 23688899999986
No 132
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.51 E-value=3e-14 Score=118.12 Aligned_cols=120 Identities=10% Similarity=0.023 Sum_probs=70.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCC-------CCcceeEEEEEE---EE--CCeEEEEEeCCCCCCCCcCcH
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSF-------QSEALRPVMVSR---SK--GGFTLNIIDTPGLVEAGYVNY 103 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~-------~~~t~~~~~~~~---~~--~g~~l~viDTPG~~~~~~~~~ 103 (298)
..++|+++|.+|+|||||+|.+.+......... ...|........ .. ....+.+|||||......
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--- 89 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA--- 89 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH---
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH---
Confidence 468999999999999999999987643221110 001111111111 11 234789999999854321
Q ss_pred HHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHH----HHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 104 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQII----KAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 104 ~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l----~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
... .++ ..+|++++|++++.. ....+.+.+ +++.+........|+++|+||+|+.
T Consensus 90 ~~~----~~~--~~~d~~i~v~D~~~~-~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~ 148 (198)
T 3t1o_A 90 SRK----LIL--RGVDGIVFVADSAPN-RLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP 148 (198)
T ss_dssp HHH----HHT--TTCCEEEEEEECCGG-GHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST
T ss_pred HHH----HHH--hcCCEEEEEEECCcc-hhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc
Confidence 111 112 689999999877632 222222222 3333332222348999999999985
No 133
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.50 E-value=5.3e-14 Score=119.35 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=75.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE--CCeEEEEEeCCCCCCCCcCcHHHHHHHHh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKG 111 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~l~viDTPG~~~~~~~~~~~~~~i~~ 111 (298)
....++|+|+|.+|+|||||+|++++.... .....+........... ....+.+|||||......... .
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~ 94 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRP-------L 94 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGG-------G
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCC--CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHH-------H
Confidence 345799999999999999999999987642 22222222222222233 345789999999754322111 1
Q ss_pred hhhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 112 FLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 112 ~~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+ ...+|++++|++++... +......++..+..... ..|+++|+||+|+.
T Consensus 95 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 95 C--YSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP---STRVLLIGCKTDLR 144 (214)
T ss_dssp G--CTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT---TSEEEEEEECGGGG
T ss_pred H--cCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhc
Confidence 1 26899999998887522 21112456666766643 28999999999985
No 134
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.50 E-value=2.9e-13 Score=124.15 Aligned_cols=122 Identities=15% Similarity=0.067 Sum_probs=73.4
Q ss_pred cE-EEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCC--cCcHHHHHHHHhhhh
Q 022358 38 LT-ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG--YVNYQALELIKGFLL 114 (298)
Q Consensus 38 l~-IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~--~~~~~~~~~i~~~~~ 114 (298)
++ |+++|.+|+|||||+|+|+|... .++..+++|..+......++|..+.++||||+.... ...+. +......
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~-f~~tl~~-- 254 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDA-FFVTLSE-- 254 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHH-HHHHHHG--
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHH-HHHHHHH--
Confidence 44 99999999999999999999875 555566677666667777888999999999985421 11111 2222222
Q ss_pred cCCCCEEEEEEeCCCCCC-CHHHH-HHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRV-DDLDR-QIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~-~~~~~-~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
...+|++++|++++.... ..... .+.+.+...... ..|+++|+||+|+.
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~--~~p~ilV~NK~Dl~ 305 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVS--GKPILVTLNKIDKI 305 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCC--SCCEEEEEECGGGC
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcC--CCCEEEEEECCCCC
Confidence 257899999976653210 11111 223334443212 27999999999985
No 135
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.49 E-value=3.3e-13 Score=112.76 Aligned_cols=122 Identities=16% Similarity=0.076 Sum_probs=75.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe--EEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
...++|+++|.+|||||||+|++++..... ...+..+.........+++. .+.+|||||..... ...... +
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---~~~~~~---~ 93 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDS-AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG---GWLRDH---C 93 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCG-GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG---HHHHHH---H
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCc-cCCCCcccceEEEEEEECCEEEEEEEEecCCCccch---hhhHHH---h
Confidence 356999999999999999999998754322 12222333333333445554 67889999985321 111111 1
Q ss_pred hhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCC
Q 022358 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 167 (298)
. ..+|++++|++++... +.. -..++..+...... ...|+++|+||+|+.+.
T Consensus 94 ~--~~~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~ 145 (195)
T 3cbq_A 94 L--QTGDAFLIVFSVTDRRSFSK-VPETLLRLRAGRPH-HDLPVILVGNKSDLARS 145 (195)
T ss_dssp H--HHCSEEEEEEETTCHHHHHT-HHHHHHHHHHHSTT-SCCCEEEEEECTTCTTT
T ss_pred h--ccCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCC-CCCCEEEEeechhcccc
Confidence 1 3689999998887522 211 23445555544321 23899999999999643
No 136
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.49 E-value=6.4e-14 Score=118.13 Aligned_cols=116 Identities=15% Similarity=0.168 Sum_probs=76.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..++|+++|.+|+|||||+|++++.... ....+++..........++ ..+.+|||||......... .+
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~- 77 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRP-------LS- 77 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--C-------GG-
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--ccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHH-------hh-
Confidence 5699999999999999999999976542 2222222222233334444 4889999999865432211 11
Q ss_pred hcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
...+|++++|++++... +......++..+....+ ..|+++|+||+|+.
T Consensus 78 -~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 126 (212)
T 2j0v_A 78 -YRGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLR 126 (212)
T ss_dssp -GTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHH
T ss_pred -ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhh
Confidence 16899999998876522 22222246666666543 38999999999984
No 137
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.49 E-value=2.7e-13 Score=114.65 Aligned_cols=120 Identities=14% Similarity=0.105 Sum_probs=71.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC------------CeEEEEEeCCCCCCCCcC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG------------GFTLNIIDTPGLVEAGYV 101 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~------------g~~l~viDTPG~~~~~~~ 101 (298)
....++|+|+|.+|+|||||+|+|++..... ...+..+.........+. ...+.+|||||..
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----- 95 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNP-KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE----- 95 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCC-EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH-----
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCc-CCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH-----
Confidence 3456999999999999999999999876421 111111111111122222 4579999999952
Q ss_pred cHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCC--CCceEEEEEeCcCCCC
Q 022358 102 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQ--IWRKSLLVLTHAQLCP 166 (298)
Q Consensus 102 ~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~tk~D~~~ 166 (298)
.+......++ ..+|++++|++++... ....+..++....... ...|+++|+||+|+.+
T Consensus 96 --~~~~~~~~~~--~~~d~iilV~D~~~~~---s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 96 --RFRSLTTAFF--RDAMGFLLMFDLTSQQ---SFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp --HHHHHHHHHH--TTCCEEEEEEETTCHH---HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred --hHHhHHHHHh--cCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 2222222333 6899999997776421 1122223333332211 2489999999999853
No 138
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.49 E-value=2.3e-14 Score=117.41 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=68.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..++|+++|.+|+|||||+|++++.... ....+++..........+ ...+.+|||||..+...... .+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~- 76 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRP-------LS- 76 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC------------CBCCCC-------CEEECCCC-CTTTTTGG-------GG-
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHH-------hh-
Confidence 5799999999999999999999976532 111121111111111222 34567999999865432221 11
Q ss_pred hcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
...+|++++|++++... +......++..+..... ..|+++|+||+|+.
T Consensus 77 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 125 (182)
T 3bwd_D 77 -YRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLR 125 (182)
T ss_dssp -GTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHH
T ss_pred -ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhh
Confidence 16789999998876522 22222246666666543 38999999999984
No 139
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.47 E-value=2.9e-13 Score=123.67 Aligned_cols=126 Identities=18% Similarity=0.302 Sum_probs=72.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccc-----cCCCC----------------------ccee-------------
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTV-----NSFQS----------------------EALR------------- 74 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~-----~~~~~----------------------~t~~------------- 74 (298)
....+|+|+|.+|+|||||+|+|+|...... +..+. +|..
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 3457999999999999999999999875321 11121 0000
Q ss_pred ----------EEEEEEE-ECCeEEEEEeCCCCCCCCc---Cc---HHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHH
Q 022358 75 ----------PVMVSRS-KGGFTLNIIDTPGLVEAGY---VN---YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDR 137 (298)
Q Consensus 75 ----------~~~~~~~-~~g~~l~viDTPG~~~~~~---~~---~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~ 137 (298)
....... .++.++++|||||+..... .. +.+...+..+.. ...+++|+|++.+. .+...+.
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiL~v~~a~~-~~~~~~~ 186 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANS-DLANSDA 186 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHT-STTEEEEEEEETTS-CGGGCHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHc-CCCeEEEEEecCCC-ccchhHH
Confidence 0000111 1246799999999976321 11 133333334442 45567777755443 3443333
Q ss_pred -HHHHHHHHHhCCCCCceEEEEEeCcCCCCC
Q 022358 138 -QIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (298)
Q Consensus 138 -~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~ 167 (298)
.+++.+ ... ..|+++|+||+|+.+.
T Consensus 187 ~~i~~~~---~~~--~~~~i~V~NK~Dl~~~ 212 (353)
T 2x2e_A 187 LKVAKEV---DPQ--GQRTIGVITKLDLMDE 212 (353)
T ss_dssp HHHHHHH---CTT--CTTEEEEEECGGGSCT
T ss_pred HHHHHHh---CcC--CCceEEEeccccccCc
Confidence 233333 222 3899999999999643
No 140
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.47 E-value=3.1e-13 Score=123.75 Aligned_cols=127 Identities=21% Similarity=0.285 Sum_probs=74.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEE-------------------------------------
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV------------------------------------- 78 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~------------------------------------- 78 (298)
.-.+|+|+|.+|+|||||+|+|+|......+.. .+|..+...
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~-~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSS-SCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCC-cccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 335999999999999999999999765332211 111111110
Q ss_pred -----------------E-EEECCeEEEEEeCCCCCCCCc------CcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCH
Q 022358 79 -----------------S-RSKGGFTLNIIDTPGLVEAGY------VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDD 134 (298)
Q Consensus 79 -----------------~-~~~~g~~l~viDTPG~~~~~~------~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~ 134 (298)
. ....+..+++|||||+.+... ....+...+..++ .++|++++|+........
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i--~~~d~iilvv~~~~~~~~- 188 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYI--EKPNCIILAISPANQDLA- 188 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHH--HSSSEEEEEEEETTSCGG-
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHh--hcCCeEEEEeecccCCcC-
Confidence 1 111245789999999987421 1122333333444 589988888544322211
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCCC
Q 022358 135 LDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 169 (298)
Q Consensus 135 ~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~ 169 (298)
...++..+...... ..|+++|+||+|+.+...
T Consensus 189 -~~~~~~l~~~~~~~--~~~~i~V~nK~Dl~~~~~ 220 (360)
T 3t34_A 189 -TSDAIKISREVDPS--GDRTFGVLTKIDLMDKGT 220 (360)
T ss_dssp -GCHHHHHHHHSCTT--CTTEEEEEECGGGCCTTC
T ss_pred -CHHHHHHHHHhccc--CCCEEEEEeCCccCCCcc
Confidence 12233333333222 379999999999975443
No 141
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.47 E-value=2.8e-13 Score=114.69 Aligned_cols=121 Identities=15% Similarity=0.184 Sum_probs=73.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
...++|+++|.+|+|||||+|+|++............+. ...+.+..+.+|||||..... ......++...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~- 80 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-----AADYDGSGVTLVDFPGHVKLR---YKLSDYLKTRA- 80 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEE-----ETTGGGSSCEEEECCCCGGGT---HHHHHHHHHHG-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceE-----EEEeeCceEEEEECCCcHHHH---HHHHHHHHhcc-
Confidence 467999999999999999999999876422110001111 112256689999999985432 22222232211
Q ss_pred cCCCCEEEEEEeCC-CC-CCCHHHHHHHHHHHHHhC--CCCCceEEEEEeCcCCCC
Q 022358 115 NKTIDVLLYADRLD-AY-RVDDLDRQIIKAVTGTFG--KQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 115 ~~~~d~vl~v~~~d-~~-~~~~~~~~~l~~l~~~~~--~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++.+ .. .+.... .++..+..... .....|+++|+||+|+.+
T Consensus 81 -~~~~~~i~v~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 134 (218)
T 1nrj_B 81 -KFVKGLIFMVDSTVDPKKLTTTA-EFLVDILSITESSCENGIDILIACNKSELFT 134 (218)
T ss_dssp -GGEEEEEEEEETTSCTTCCHHHH-HHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred -ccCCEEEEEEECCCChHHHHHHH-HHHHHHHhcccccccCCCCEEEEEEchHhcc
Confidence 3479999998876 32 233333 33333333211 112389999999999964
No 142
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.47 E-value=3.6e-13 Score=128.46 Aligned_cols=116 Identities=13% Similarity=0.147 Sum_probs=77.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
...++|+++|.+|+|||||+|+|++.... ... .|.........+.+..+.+|||||..+..... ..++
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~--~~~--~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~- 387 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV--TTI--PTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW-------RHYY- 387 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC--CCC--CCSSEEEEEEESSSCEEEEEEECCCGGGSGGG-------GGGG-
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC--CcC--CccceeEEEEEeCCEEEEEEECCCcHHHHHHH-------HHHh-
Confidence 35689999999999999999999988732 222 24555556677788999999999975433211 1122
Q ss_pred cCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++|+|++++... +... ..++..+.+... ....|+++|+||+|+.
T Consensus 388 -~~ad~~i~V~D~~~~~s~~~~-~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~ 436 (497)
T 3lvq_E 388 -TGTQGLIFVVDCADRDRIDEA-RQELHRIINDRE-MRDAIILIFANKQDLP 436 (497)
T ss_dssp -TTCCEEEEEEETTCGGGHHHH-HHHHHHHHTSGG-GTTCEEEEEEECCSSS
T ss_pred -ccCCEEEEEEECcchhHHHHH-HHHHHHHhhhhh-cCCCcEEEEEECCCCC
Confidence 6899999998876522 2222 222222222111 1238999999999985
No 143
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.46 E-value=2.6e-13 Score=122.01 Aligned_cols=127 Identities=17% Similarity=0.157 Sum_probs=81.8
Q ss_pred HHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeE--EEEEeCCCCCCCCcCc
Q 022358 25 ELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFT--LNIIDTPGLVEAGYVN 102 (298)
Q Consensus 25 ~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~--l~viDTPG~~~~~~~~ 102 (298)
+....+.+.....++|+++|.+|+|||||+|++++... .....+++..........++.. +.+|||||........
T Consensus 143 ~~~~~~~~~~~~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 220 (332)
T 2wkq_A 143 KTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR 220 (332)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTG
T ss_pred hhcccchhcccceeEEEEECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHH
Confidence 33334444455679999999999999999999997653 2233334443334444556654 5599999985433211
Q ss_pred HHHHHHHHhhhhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 103 YQALELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 103 ~~~~~~i~~~~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
. . ....+|++++|++++... +......++..+....+ ..|+++|+||+|+.
T Consensus 221 ~-------~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~ 272 (332)
T 2wkq_A 221 P-------L--SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLR 272 (332)
T ss_dssp G-------G--GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHH
T ss_pred H-------H--hccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcc
Confidence 1 1 126899999998876522 22222245566666543 38999999999984
No 144
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.45 E-value=3.7e-13 Score=123.38 Aligned_cols=144 Identities=19% Similarity=0.311 Sum_probs=72.3
Q ss_pred hhccccCCchhhHHHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCC------CcceeEE--EEE
Q 022358 8 EWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQ------SEALRPV--MVS 79 (298)
Q Consensus 8 ~~~~~~~l~~~~~~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~------~~t~~~~--~~~ 79 (298)
.+.++..++...... .-.....++|+|+|++|+|||||+|+|++......+..+ ..|.... .+.
T Consensus 16 ~~v~~~~l~~~~~~k--------~~~~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~ 87 (361)
T 2qag_A 16 GYVGFANLPNQVHRK--------SVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVE 87 (361)
T ss_dssp -----CCHHHHHHTH--------HHHHCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC
T ss_pred ceEEeccchHHhCCe--------eecCCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEE
Confidence 456677766543221 111235699999999999999999999987653322211 1122211 222
Q ss_pred EEECCe--EEEEEeCCCCCCCCc-------CcHHHH----HHHHh-------hhhcCCCCEEEEEEeCCCCCCCHHHHHH
Q 022358 80 RSKGGF--TLNIIDTPGLVEAGY-------VNYQAL----ELIKG-------FLLNKTIDVLLYADRLDAYRVDDLDRQI 139 (298)
Q Consensus 80 ~~~~g~--~l~viDTPG~~~~~~-------~~~~~~----~~i~~-------~~~~~~~d~vl~v~~~d~~~~~~~~~~~ 139 (298)
....+. .+.+|||||+++... ....+. ..++. .+.+.++|+++|++......+.+.+..+
T Consensus 88 ~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~ 167 (361)
T 2qag_A 88 IEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAF 167 (361)
T ss_dssp ----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHH
T ss_pred eecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHH
Confidence 233444 789999999976421 111011 11111 1123467889999544334577777766
Q ss_pred HHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 140 IKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 140 l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
++.+. . ..|+|+|+||+|+.
T Consensus 168 ~~~l~----~--~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 168 MKAIH----N--KVNIVPVIAKADTL 187 (361)
T ss_dssp HHHTC----S---SCEEEEEECCSSS
T ss_pred HHHhc----c--CCCEEEEEECCCCC
Confidence 66542 2 27999999999985
No 145
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.44 E-value=2.4e-13 Score=131.05 Aligned_cols=123 Identities=20% Similarity=0.264 Sum_probs=77.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcc--cccCCCCcceeEEEEEEE--------------------------------
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVV--TVNSFQSEALRPVMVSRS-------------------------------- 81 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~--~~~~~~~~t~~~~~~~~~-------------------------------- 81 (298)
..++|+|+|.+|+|||||+|+|+|..+. .++..+.++........+
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 3479999999999999999999999864 344444433211111100
Q ss_pred ----ECC---eEEEEEeCCCCCCCCcC--cHH--HHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCC
Q 022358 82 ----KGG---FTLNIIDTPGLVEAGYV--NYQ--ALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQ 150 (298)
Q Consensus 82 ----~~g---~~l~viDTPG~~~~~~~--~~~--~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~ 150 (298)
+.+ ..+++|||||+.+.... ... +......++ ..+|++++|++.+.....+.+..+++.+...
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---- 217 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFA--ERVDLIILLFDAHKLEISDEFSEAIGALRGH---- 217 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHH--HHCSEEEEEEETTSCCCCHHHHHHHHHTTTC----
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHH--HhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc----
Confidence 000 36899999999763211 100 112222222 4789999997776534566667776665432
Q ss_pred CCceEEEEEeCcCCC
Q 022358 151 IWRKSLLVLTHAQLC 165 (298)
Q Consensus 151 ~~~~~ivV~tk~D~~ 165 (298)
..|+++|+||+|+.
T Consensus 218 -~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 218 -EDKIRVVLNKADMV 231 (550)
T ss_dssp -GGGEEEEEECGGGS
T ss_pred -CCCEEEEEECCCcc
Confidence 27899999999985
No 146
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.44 E-value=1.1e-12 Score=129.76 Aligned_cols=126 Identities=21% Similarity=0.330 Sum_probs=79.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEE------------------------------------
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV------------------------------------ 78 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~------------------------------------ 78 (298)
....+|+|+|.+++|||||+|+|+|......+.. .+|..+...
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g-~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSS-CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCc-cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 3457999999999999999999999876333321 222221111
Q ss_pred ---------------EE-EECCeEEEEEeCCCCCCCCc--Cc----HHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHH
Q 022358 79 ---------------SR-SKGGFTLNIIDTPGLVEAGY--VN----YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLD 136 (298)
Q Consensus 79 ---------------~~-~~~g~~l~viDTPG~~~~~~--~~----~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~ 136 (298)
.. .-+..++++|||||+..... .. ....+.+..++. ..+|++|+|++.+. .+...+
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~-~~aDlIL~VVDAs~-~~~~~d 205 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANS-DLANSD 205 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT-STTEEEEEEEETTS-CSSSCH
T ss_pred hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEEEcCCC-CcchhH
Confidence 11 11234689999999987321 11 233344444544 68899999965543 344445
Q ss_pred H-HHHHHHHHHhCCCCCceEEEEEeCcCCCCCC
Q 022358 137 R-QIIKAVTGTFGKQIWRKSLLVLTHAQLCPPD 168 (298)
Q Consensus 137 ~-~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~ 168 (298)
. .+++.+... ..|+++|+||+|+.+..
T Consensus 206 ~l~ll~~L~~~-----g~pvIlVlNKiDlv~~~ 233 (772)
T 3zvr_A 206 ALKIAKEVDPQ-----GQRTIGVITKLDLMDEG 233 (772)
T ss_dssp HHHHHHHHCTT-----CSSEEEEEECTTSSCTT
T ss_pred HHHHHHHHHhc-----CCCEEEEEeCcccCCcc
Confidence 4 555555433 38999999999997443
No 147
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.43 E-value=1.7e-12 Score=123.28 Aligned_cols=117 Identities=9% Similarity=0.138 Sum_probs=76.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcc------cccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHH
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVV------TVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 107 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~------~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~ 107 (298)
.+..++|+++|.+++|||||+|+|++.... .....++.|.........+++..+.+|||||.. ++..
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~-------~~~~ 88 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA-------DLIR 88 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH-------HHHH
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH-------HHHH
Confidence 345789999999999999999999987611 111222333333333456688999999999972 3333
Q ss_pred HHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 108 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 108 ~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.+.... ..+|++++|++.+. .......+.+..+... + .|.++|+||+|+.
T Consensus 89 ~~~~~~--~~aD~~ilVvda~~-g~~~qt~e~l~~~~~~-~----ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 89 AVVSAA--DIIDLALIVVDAKE-GPKTQTGEHMLILDHF-N----IPIIVVITKSDNA 138 (482)
T ss_dssp HHHHHT--TSCCEEEEEEETTT-CSCHHHHHHHHHHHHT-T----CCBCEEEECTTSS
T ss_pred HHHHHH--hhCCEEEEEEecCC-CccHHHHHHHHHHHHc-C----CCEEEEEECCCcc
Confidence 333333 68999999977654 3455556666555443 2 6779999999985
No 148
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.43 E-value=3.6e-13 Score=124.81 Aligned_cols=88 Identities=18% Similarity=0.204 Sum_probs=45.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEE---------------------EC---CeEEEEEeCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS---------------------KG---GFTLNIIDTP 93 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~---------------------~~---g~~l~viDTP 93 (298)
++|+++|.+|+|||||+|+|++.. ..++.++++|..+...... ++ +.++.+||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 589999999999999999999987 5667777777655443211 12 2579999999
Q ss_pred CCCCCCcCcHHHHHHHHhhh-hcCCCCEEEEEEeCCC
Q 022358 94 GLVEAGYVNYQALELIKGFL-LNKTIDVLLYADRLDA 129 (298)
Q Consensus 94 G~~~~~~~~~~~~~~i~~~~-~~~~~d~vl~v~~~d~ 129 (298)
|+.......... ..+++ ....+|++++|++...
T Consensus 80 G~~~~a~~~~~l---~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 80 GLVPGAHEGRGL---GNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp ------------------CCCSSTTCSEEEEEEETTC
T ss_pred CcccchhhhhhH---HHHHHHHHhcCCEEEEEEeccc
Confidence 997532221111 12222 2268999999987754
No 149
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.13 E-value=1.6e-14 Score=121.13 Aligned_cols=117 Identities=17% Similarity=0.143 Sum_probs=73.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
.+.++|+++|.+|+|||||+|++++.... ....+++..........+ ...+.+|||||..+...... .+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~ 98 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRP-------LS 98 (204)
Confidence 36799999999999999999999976542 112222222222222233 34567999999754321111 11
Q ss_pred hhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
. ..+|++++|++++... +......++..+....+ ..|+++|+||+|+.
T Consensus 99 ~--~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~ 147 (204)
T 3th5_A 99 Y--PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR 147 (204)
Confidence 1 5789999997765422 33322345555555433 38999999999985
No 150
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=3e-12 Score=108.62 Aligned_cols=121 Identities=14% Similarity=0.072 Sum_probs=73.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe--EEEEEeCCCCCCCCcCcHHHHHHHHhh
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGF 112 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~viDTPG~~~~~~~~~~~~~~i~~~ 112 (298)
...++|+|+|.+|||||||+|++++.........+..+.........+++. .+.++||+|... . ...+..
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~------~-~~~l~~- 106 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG------E-NEWLHD- 106 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH------H-HHHHHH-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcc------h-hhhHHH-
Confidence 356899999999999999999999865433333222222222334455665 467899999632 1 112221
Q ss_pred hhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.....+|++++|+++++.. +... ..+...+.+... ....|+++|.||+|+.
T Consensus 107 ~~~~~a~~~ilVydvt~~~sf~~~-~~~~~~l~~~~~-~~~~piilVgNK~DL~ 158 (211)
T 2g3y_A 107 HCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQ-TEDIPIILVGNKSDLV 158 (211)
T ss_dssp CCCCCCSEEEEEEETTCHHHHHHH-HHHHHHHHTSGG-GTTSCEEEEEECTTCG
T ss_pred HHHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHHhC-CCCCcEEEEEEChHHh
Confidence 1225789999998888632 2211 233344443211 1137999999999985
No 151
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.41 E-value=1.3e-12 Score=124.32 Aligned_cols=119 Identities=12% Similarity=0.173 Sum_probs=76.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcc------------------------------cccCCCCcceeEEEEEEEEC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVV------------------------------TVNSFQSEALRPVMVSRSKG 83 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~------------------------------~~~~~~~~t~~~~~~~~~~~ 83 (298)
....++|+++|.+|+|||||+|+|++.... ......+.|...........
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 446799999999999999999999865110 00111244555555566778
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCC------CCHHHHHHHHHHHHHhCCCCCceEEE
Q 022358 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR------VDDLDRQIIKAVTGTFGKQIWRKSLL 157 (298)
Q Consensus 84 g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~------~~~~~~~~l~~l~~~~~~~~~~~~iv 157 (298)
+..+.+|||||..+ +...+.... ..+|++|+|++.+... ......+.+..+.. .+. +|+|+
T Consensus 110 ~~~~~iiDTPG~~~-------f~~~~~~~~--~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~---~~iIv 176 (483)
T 3p26_A 110 RANFTIVDAPGHRD-------FVPNAIMGI--SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNLII 176 (483)
T ss_dssp SCEEEEECCCCCGG-------GHHHHHHHH--TTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTC---CCEEE
T ss_pred CceEEEEECCCcHH-------HHHHHHHhh--hhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCC---CcEEE
Confidence 88999999999843 222222222 6899999997776421 22333344333333 332 57999
Q ss_pred EEeCcCCC
Q 022358 158 VLTHAQLC 165 (298)
Q Consensus 158 V~tk~D~~ 165 (298)
|+||+|+.
T Consensus 177 viNK~Dl~ 184 (483)
T 3p26_A 177 AMNKMDNV 184 (483)
T ss_dssp EEECGGGG
T ss_pred EEECcCcc
Confidence 99999985
No 152
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.40 E-value=1.4e-12 Score=108.61 Aligned_cols=119 Identities=13% Similarity=0.108 Sum_probs=70.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe--EEEEEeCCCCCCC-CcCcHHHHHHHHhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEA-GYVNYQALELIKGF 112 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~viDTPG~~~~-~~~~~~~~~~i~~~ 112 (298)
..++|+++|.+|||||||+|++++......+..+..+.........++|. .+.++||+|.... ......+ +
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~---~--- 78 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHC---M--- 78 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGH---H---
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhh---c---
Confidence 46899999999999999999999754322222222222222334455665 5678999997541 1111111 1
Q ss_pred hhcCCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|+++++.. +.. -..+...+.+.... ...|+++|.||+|+.
T Consensus 79 ---~~~~~~i~v~dv~~~~s~~~-~~~~~~~l~~~~~~-~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 79 ---QVGDAYLIVYSITDRASFEK-ASELRIQLRRARQT-EDIPIILVGNKSDLV 127 (192)
T ss_dssp ---HHCSEEEEEEETTCHHHHHH-HHHHHHHHHHHTTT-SCCCEEEEEECTTCG
T ss_pred ---ccCCEEEEEEECCCHHHHHH-HHHHHHHHHHhhCC-CCCeEEEEEechhhh
Confidence 3579999998887632 221 22344445544221 237999999999985
No 153
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.40 E-value=5e-12 Score=118.74 Aligned_cols=118 Identities=10% Similarity=0.093 Sum_probs=75.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccc------------------------------CCCCcceeEEEEEEEECC
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVN------------------------------SFQSEALRPVMVSRSKGG 84 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~------------------------------~~~~~t~~~~~~~~~~~g 84 (298)
...++|+++|.+++|||||+|+|++....... ...+.|........+..+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 35689999999999999999999765221110 012345555555667788
Q ss_pred eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCC------HHHHHHHHHHHHHhCCCCCceEEEE
Q 022358 85 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVD------DLDRQIIKAVTGTFGKQIWRKSLLV 158 (298)
Q Consensus 85 ~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~------~~~~~~l~~l~~~~~~~~~~~~ivV 158 (298)
..+.+|||||..+ +...+.... ..+|++++|++.+..-+. ....+.+..+... +. .++++|
T Consensus 95 ~~~~iiDTPGh~~-------f~~~~~~~~--~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~-~v---~~iIvv 161 (439)
T 3j2k_7 95 KHFTILDAPGHKS-------FVPNMIGGA--SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GV---KHLIVL 161 (439)
T ss_pred eEEEEEECCChHH-------HHHHHHhhH--hhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc-CC---CeEEEE
Confidence 8999999999742 222333222 579999999776542110 2334444333332 21 349999
Q ss_pred EeCcCCC
Q 022358 159 LTHAQLC 165 (298)
Q Consensus 159 ~tk~D~~ 165 (298)
+||+|+.
T Consensus 162 iNK~Dl~ 168 (439)
T 3j2k_7 162 INKMDDP 168 (439)
T ss_pred eecCCCc
Confidence 9999984
No 154
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.38 E-value=3.4e-12 Score=118.59 Aligned_cols=119 Identities=14% Similarity=0.113 Sum_probs=72.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeE---------E----------EEEEEECCeEEEEEeCCC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRP---------V----------MVSRSKGGFTLNIIDTPG 94 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~---------~----------~~~~~~~g~~l~viDTPG 94 (298)
....++|+++|.+|+|||||+|+|++........+...+... . ..........+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 346799999999999999999999986432111110000000 0 000011226899999999
Q ss_pred CCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 95 LVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 95 ~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+ +...+.... ..+|++++|++.+.........+.+..+... +. +|+++|+||+|+.
T Consensus 85 h~~-------~~~~~~~~~--~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~ 142 (403)
T 3sjy_A 85 HEV-------LMATMLSGA--ALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVV 142 (403)
T ss_dssp CGG-------GHHHHHHHH--TTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGS
T ss_pred cHH-------HHHHHHHHH--hhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECcccc
Confidence 632 222222222 6899999997776522244455555555444 32 5899999999985
No 155
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.38 E-value=6.8e-12 Score=104.78 Aligned_cols=116 Identities=15% Similarity=0.096 Sum_probs=72.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe--EEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
.++|+++|++|||||||+|.|+|....... .+..+.........++|. .+.+|||||..........+ +
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~-~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~---~----- 75 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAY---Y----- 75 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHH---H-----
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHH---H-----
Confidence 589999999999999999999987643222 122222333444556665 56789999975433222111 1
Q ss_pred cCCCCEEEEEEeCCCCCCCHHH-HHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLD-RQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+|++++|+++.... +..+ ..++..+...... ..|+++|+||+|+.
T Consensus 76 -~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 76 -RGAVGALLVYDIAKHL-TYENVERWLKELRDHADS--NIVIMLVGNKSDLR 123 (199)
T ss_dssp -TTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCG
T ss_pred -hcCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCC--CCeEEEEEECcccc
Confidence 5789999997776421 1111 2344444443222 37999999999985
No 156
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.37 E-value=1.6e-12 Score=120.90 Aligned_cols=117 Identities=9% Similarity=0.098 Sum_probs=77.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCc--------cc---cc-----CCCCcceeEEEEEEEECCeEEEEEeCCCCCC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERV--------VT---VN-----SFQSEALRPVMVSRSKGGFTLNIIDTPGLVE 97 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~--------~~---~~-----~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~ 97 (298)
....++|+++|.+|+|||||+|+|++... .. .. ...+.|...........+..+.+|||||..+
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 34679999999999999999999997310 00 00 0123344444445566778999999999854
Q ss_pred CCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCce-EEEEEeCcCCC
Q 022358 98 AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC 165 (298)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~ 165 (298)
. ...+.... ..+|++++|++.+. .......+.+..+... + .| +++|+||+|+.
T Consensus 88 f-------~~~~~~~~--~~aD~~ilVvda~~-g~~~qt~~~l~~~~~~-~----ip~iivviNK~Dl~ 141 (405)
T 2c78_A 88 Y-------IKNMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQV-G----VPYIVVFMNKVDMV 141 (405)
T ss_dssp G-------HHHHHHHH--TTCSSEEEEEETTT-CCCHHHHHHHHHHHHT-T----CCCEEEEEECGGGC
T ss_pred H-------HHHHHHHH--HHCCEEEEEEECCC-CCcHHHHHHHHHHHHc-C----CCEEEEEEECcccc
Confidence 2 12222222 58999999977764 3455556666555543 2 56 89999999985
No 157
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.37 E-value=5.6e-13 Score=110.04 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=64.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCc-ceeEEEEEEE-----ECCeEEEEEeCCCCCCCCcCcHHHHHHHH
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRS-----KGGFTLNIIDTPGLVEAGYVNYQALELIK 110 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~-----~~g~~l~viDTPG~~~~~~~~~~~~~~i~ 110 (298)
.++|+++|.+|||||||+|.+++......+....+ +......... .....+.+|||||.........
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------- 74 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHP------- 74 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSH-------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhH-------
Confidence 47999999999999999999998632122221111 1111111111 1355889999999742211111
Q ss_pred hhhhcCCCCEEEEEEeCCCCCCC-HHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 111 GFLLNKTIDVLLYADRLDAYRVD-DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 111 ~~~~~~~~d~vl~v~~~d~~~~~-~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.++ .+.|++++|++++...-+ ..-..++..+..... ..|+++|.||+|+.
T Consensus 75 ~~~--~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 125 (184)
T 2zej_A 75 HFM--TQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS---SSPVILVGTHLDVS 125 (184)
T ss_dssp HHH--HHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT---TCEEEEEEECGGGC
T ss_pred HHc--cCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC---CCcEEEEEECCCcc
Confidence 111 357899999877642101 111234444444322 27999999999984
No 158
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.35 E-value=7.1e-12 Score=120.60 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=74.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEE------------EECCeEEEEEeCCCCCCCCcC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSR------------SKGGFTLNIIDTPGLVEAGYV 101 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~------------~~~g~~l~viDTPG~~~~~~~ 101 (298)
....++|+++|.+|||||||+|++++..... .... |........ ...+..+.+|||||.......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~--~~~~-t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~ 114 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDP--KESQ-THGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHAS 114 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC--------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTT
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCC--CCCC-ccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHH
Confidence 4567999999999999999999999886421 1111 111111111 112578999999997554433
Q ss_pred cHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCCCCC
Q 022358 102 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 169 (298)
Q Consensus 102 ~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~~~~ 169 (298)
...+ + ..+|++++|+++. .. +....++..+....+. .|+++|+||+|+.+..+
T Consensus 115 ~~~~---l------~~~d~ii~V~D~s--~~-~~~~~~~~~l~~~~~~---~pvilV~NK~Dl~~~~~ 167 (535)
T 3dpu_A 115 HQFF---M------TRSSVYMLLLDSR--TD-SNKHYWLRHIEKYGGK---SPVIVVMNKIDENPSYN 167 (535)
T ss_dssp CHHH---H------HSSEEEEEEECGG--GG-GGHHHHHHHHHHHSSS---CCEEEEECCTTTCTTCC
T ss_pred HHHH---c------cCCcEEEEEEeCC--Cc-hhHHHHHHHHHHhCCC---CCEEEEEECCCcccccc
Confidence 3322 2 3689999996544 33 3445677777776543 89999999999964443
No 159
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.34 E-value=9.2e-12 Score=104.51 Aligned_cols=121 Identities=17% Similarity=0.249 Sum_probs=69.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC-cccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCc---HHHHHHHHh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN---YQALELIKG 111 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~---~~~~~~i~~ 111 (298)
...+|+++|++|+|||||+|+|+|.. ...+.+.++.+.....+ .+.+ .+.++||||+....... +.+...+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~--~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLF--EVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEE--EEET-TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEE--EecC-CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 45799999999999999999999986 33333344444433222 2223 67899999986532111 122222222
Q ss_pred hh-hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 112 FL-LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 112 ~~-~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+. ....++.+++++++.. ..+..+.++.+.+... ..|+++|.||+|..
T Consensus 102 ~~~~~~~~~~~~~v~d~~~-~~~~~~~~~~~~~~~~-----~~~~~~v~nK~D~~ 150 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRH-PLKDLDQQMIEWAVDS-----NIAVLVLLTKADKL 150 (210)
T ss_dssp HHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGS
T ss_pred HHHhhhcccEEEEEEECCC-CCchhHHHHHHHHHHc-----CCCeEEEEecccCC
Confidence 22 1256789999977764 3444444555544432 27889999999975
No 160
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.34 E-value=3.3e-12 Score=124.52 Aligned_cols=119 Identities=13% Similarity=0.161 Sum_probs=77.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccC------------------------------CCCcceeEEEEEEEEC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS------------------------------FQSEALRPVMVSRSKG 83 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~------------------------------~~~~t~~~~~~~~~~~ 83 (298)
....++|+++|.+|+|||||+|+|++........ .++.|...........
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 3457999999999999999999999764321110 1244554445556678
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCC----C--CCHHHHHHHHHHHHHhCCCCCceEEE
Q 022358 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAY----R--VDDLDRQIIKAVTGTFGKQIWRKSLL 157 (298)
Q Consensus 84 g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~----~--~~~~~~~~l~~l~~~~~~~~~~~~iv 157 (298)
+..+.+|||||..+ +...+... ...+|++|+|++.+.. . ......+.+..+.. .+. +++|+
T Consensus 244 ~~~~~iiDTPG~e~-------f~~~~~~~--~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi---~~iIV 310 (611)
T 3izq_1 244 RANFTIVDAPGHRD-------FVPNAIMG--ISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNLII 310 (611)
T ss_dssp SCEEEEEECCSSSC-------HHHHHTTT--SSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTC---CEEEE
T ss_pred CceEEEEECCCCcc-------cHHHHHHH--HhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCC---CeEEE
Confidence 88999999999843 22222222 2689999999766531 0 12233333333332 222 56999
Q ss_pred EEeCcCCC
Q 022358 158 VLTHAQLC 165 (298)
Q Consensus 158 V~tk~D~~ 165 (298)
|+||+|+.
T Consensus 311 VvNKiDl~ 318 (611)
T 3izq_1 311 AMNKMDNV 318 (611)
T ss_dssp EEECTTTT
T ss_pred EEeccccc
Confidence 99999985
No 161
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.33 E-value=1.9e-12 Score=124.16 Aligned_cols=115 Identities=10% Similarity=0.133 Sum_probs=79.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccc---------------ccC------CCCcceeEEEEEEEECCeEEEEEeCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVT---------------VNS------FQSEALRPVMVSRSKGGFTLNIIDTPG 94 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~---------------~~~------~~~~t~~~~~~~~~~~g~~l~viDTPG 94 (298)
+..+|+++|.+|+|||||+|+|++..... +.. ..+.|.........+.+..+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 45799999999999999999997221100 000 123344444566778899999999999
Q ss_pred CCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 95 LVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 95 ~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+.+... ..... + ..+|++|+|++... ..+.....++..+... ..|+++|+||+|+.
T Consensus 92 ~~df~~---~~~~~----l--~~aD~allVvDa~~-g~~~~t~~~~~~~~~~-----~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 92 HADFTE---DTYRT----L--TAVDSALMVIDAAK-GVEPRTIKLMEVCRLR-----HTPIMTFINKMDRD 147 (528)
T ss_dssp STTCCH---HHHHG----G--GGCSEEEEEEETTT-CSCHHHHHHHHHHHTT-----TCCEEEEEECTTSC
T ss_pred chhHHH---HHHHH----H--HhCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCc
Confidence 966432 22222 2 57899999976654 4566666666655543 27999999999984
No 162
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.32 E-value=5e-12 Score=117.65 Aligned_cols=125 Identities=20% Similarity=0.294 Sum_probs=69.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccC--C---CCcceeEEEEE--EEECC--eEEEEEeCCCCCCCCcCc---
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS--F---QSEALRPVMVS--RSKGG--FTLNIIDTPGLVEAGYVN--- 102 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~--~---~~~t~~~~~~~--~~~~g--~~l~viDTPG~~~~~~~~--- 102 (298)
.-.++|+|+|++|+|||||+|.|+|......+. . ...|....... ....+ ..++++||||++......
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 346899999999999999999999986422221 0 01111111111 11122 368999999997642111
Q ss_pred HHHHHHH----Hh-----------hhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 103 YQALELI----KG-----------FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 103 ~~~~~~i----~~-----------~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+.+.+ .. ++..+.+|++||++...+..+++.+..+++.+.. ..++|+|+||+|+.
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~------~v~iIlVinK~Dll 180 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTL 180 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT------TSEEEEEEESTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc------cCcEEEEEEcccCc
Confidence 1111111 11 1234667889999544433588888777776642 28999999999985
No 163
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.32 E-value=1.1e-11 Score=116.31 Aligned_cols=116 Identities=16% Similarity=0.120 Sum_probs=74.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccc----------cCCC----------------------CcceeEEEEEEEEC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTV----------NSFQ----------------------SEALRPVMVSRSKG 83 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~----------~~~~----------------------~~t~~~~~~~~~~~ 83 (298)
..++|+++|.+|+|||||+|+|++...... +..+ +.|...........
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 458999999999999999999986532111 0011 12222233345567
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcC
Q 022358 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (298)
Q Consensus 84 g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 163 (298)
+..+.+|||||..+. ...+.... ..+|++++|++.+. .......+.+..+... +. +++++|+||+|
T Consensus 103 ~~~~~iiDtpGh~~f-------~~~~~~~~--~~aD~~ilVvDa~~-g~~~qt~~~l~~~~~~-~~---~~iIvviNK~D 168 (434)
T 1zun_B 103 KRKFIIADTPGHEQY-------TRNMATGA--STCDLAIILVDARY-GVQTQTRRHSYIASLL-GI---KHIVVAINKMD 168 (434)
T ss_dssp SEEEEEEECCCSGGG-------HHHHHHHH--TTCSEEEEEEETTT-CSCHHHHHHHHHHHHT-TC---CEEEEEEECTT
T ss_pred CceEEEEECCChHHH-------HHHHHHHH--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CeEEEEEEcCc
Confidence 789999999997432 11222222 68999999977764 3445555555544433 21 47999999999
Q ss_pred CC
Q 022358 164 LC 165 (298)
Q Consensus 164 ~~ 165 (298)
+.
T Consensus 169 l~ 170 (434)
T 1zun_B 169 LN 170 (434)
T ss_dssp TT
T ss_pred CC
Confidence 85
No 164
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.32 E-value=3.1e-11 Score=100.28 Aligned_cols=117 Identities=16% Similarity=0.107 Sum_probs=73.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeE--EEEEeCCCCCCCCcCcHHHHHHHHhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFT--LNIIDTPGLVEAGYVNYQALELIKGFL 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~--l~viDTPG~~~~~~~~~~~~~~i~~~~ 113 (298)
..++|+++|++|||||||+|.+++....... .+..+.........++|.. +.+|||||..........+ +
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~-~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~---~---- 99 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY---Y---- 99 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSC-CCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHH---H----
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHH---h----
Confidence 3589999999999999999999987643222 2222333334455667764 4569999986543322221 1
Q ss_pred hcCCCCEEEEEEeCCCCCCCHHH-HHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 114 LNKTIDVLLYADRLDAYRVDDLD-RQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..++++++|+++.... +... ..++..+.+... ...++++|+||+|+.
T Consensus 100 --~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 100 --RGAVGALLVYDIAKHL-TYENVERWLKELRDHAD--SNIVIMLVGNKSDLR 147 (191)
T ss_dssp --TTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGG
T ss_pred --hcCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcC--CCCcEEEEEECcccc
Confidence 4678999997765421 1111 224444444322 237999999999984
No 165
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.30 E-value=2.7e-11 Score=112.37 Aligned_cols=115 Identities=10% Similarity=0.090 Sum_probs=75.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccc----------cc-----CCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCc
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVT----------VN-----SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY 100 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~----------~~-----~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~ 100 (298)
..++|+++|.+|+|||||+|+|++..... .. ...+.|...........+..+.+|||||..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~---- 77 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA---- 77 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH----
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH----
Confidence 46899999999999999999999741100 00 012223333333455567899999999973
Q ss_pred CcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCce-EEEEEeCcCCC
Q 022358 101 VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC 165 (298)
Q Consensus 101 ~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~ 165 (298)
++...+.... ..+|++++|++.+. .......+.+..+... + .| +++|+||+|+.
T Consensus 78 ---~f~~~~~~~~--~~aD~~ilVvda~~-g~~~qt~e~l~~~~~~-~----vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 78 ---DYVKNMITGT--APLDGCILVVAAND-GPMPQTREHLLLARQI-G----VEHVVVYVNKADAV 132 (397)
T ss_dssp ---HHHHHHHHTS--SCCSEEEEEEETTT-CSCHHHHHHHHHHHHT-T----CCCEEEEEECGGGC
T ss_pred ---HHHHHHHhhH--hhCCEEEEEEECCC-CCCHHHHHHHHHHHHc-C----CCeEEEEEECcccC
Confidence 2333333332 68999999977765 3445555555544433 2 56 78999999985
No 166
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.30 E-value=1.3e-10 Score=108.09 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=71.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccC--CCCcceeEEEEEEEE---------------C--------CeEEEEE
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNS--FQSEALRPVMVSRSK---------------G--------GFTLNII 90 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~--~~~~t~~~~~~~~~~---------------~--------g~~l~vi 90 (298)
..++|+++|.+++|||||+|+|+|........ .++.|.......... . ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 56999999999999999999999764321111 122233221111111 1 1689999
Q ss_pred eCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 91 DTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 91 DTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
||||.. .+...+... ...+|++++|++.+..-......+.+..+.. .+. .|+++|+||+|+.+
T Consensus 87 DtPGh~-------~f~~~~~~~--~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~---~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 87 DSPGHE-------TLMATMLSG--ASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGI---DKIIIVQNKIDLVD 149 (408)
T ss_dssp ECSSHH-------HHHHHHHTT--CSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECTTSSC
T ss_pred ECCCHH-------HHHHHHHHh--HhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCC---CeEEEEEEccCCCC
Confidence 999962 333333322 2578999999777642114444555544433 332 58999999999964
No 167
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.29 E-value=3.1e-13 Score=129.31 Aligned_cols=115 Identities=14% Similarity=0.168 Sum_probs=78.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE-CCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~ 114 (298)
++++|+++|.+|+|||||+|+|++...... ..++.|.....+.... .+..+.+|||||..+....... .
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~-~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~---------~ 72 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAM-EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRAR---------G 72 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHS-SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBS---------S
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc-cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHH---------H
Confidence 568999999999999999999998765332 3334444333333333 4668999999998654432211 1
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 115 ~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
...+|++++|++.+. ...+...+.+..+... ..|+++|+||+|+.+
T Consensus 73 ~~~aD~vILVVDa~d-g~~~qt~e~l~~~~~~-----~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 73 TQVTDIVILVVAADD-GVMKQTVESIQHAKDA-----HVPIVLAINKCDKAE 118 (537)
T ss_dssp SBSBSSCEEECBSSS-CCCHHHHHHHHHHHTT-----TCCEEECCBSGGGTT
T ss_pred HccCCEEEEEEECCC-CccHHHHHHHHHHHHc-----CCcEEEEEecccccc
Confidence 157899999966654 3555556665555443 279999999999853
No 168
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.28 E-value=1.2e-10 Score=108.38 Aligned_cols=118 Identities=13% Similarity=0.117 Sum_probs=72.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccc--CCCCcceeEEEEEEEE---------------C--------CeEEEE
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVN--SFQSEALRPVMVSRSK---------------G--------GFTLNI 89 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~--~~~~~t~~~~~~~~~~---------------~--------g~~l~v 89 (298)
...++|+++|.+++|||||+|+|+|....... ..++.|.........+ . ...+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 35689999999999999999999976432111 1122233222111111 0 168999
Q ss_pred EeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 90 IDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 90 iDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
|||||.. .+...+.... ..+|++++|++.+.........+.+..+... +. .|+++|+||+|+.
T Consensus 88 iDtPGh~-------~f~~~~~~~~--~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~---~~iivviNK~Dl~ 150 (410)
T 1kk1_A 88 IDAPGHE-------ALMTTMLAGA--SLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELV 150 (410)
T ss_dssp EECSSHH-------HHHHHHHHCG--GGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGS
T ss_pred EECCChH-------HHHHHHHhhh--hhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CC---CcEEEEEECccCC
Confidence 9999962 2333333222 4789999997776421144455555544433 32 5899999999985
No 169
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.26 E-value=5.2e-12 Score=119.29 Aligned_cols=116 Identities=13% Similarity=0.154 Sum_probs=72.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC--cc------------ccc----------C------CCCcceeEEEEEEEECCe
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGER--VV------------TVN----------S------FQSEALRPVMVSRSKGGF 85 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~--~~------------~~~----------~------~~~~t~~~~~~~~~~~g~ 85 (298)
..++|+++|.+|+|||||+|+|++.. .. ..+ . ..+.|...........+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 56899999999999999999998641 00 000 0 123343333445666788
Q ss_pred EEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCH-------HHHHHHHHHHHHhCCCCCceEEEE
Q 022358 86 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDD-------LDRQIIKAVTGTFGKQIWRKSLLV 158 (298)
Q Consensus 86 ~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~-------~~~~~l~~l~~~~~~~~~~~~ivV 158 (298)
.+.+|||||..+ +...+.... ..+|++++|++.+.. ..+ ...+.+..+.. .+- .++++|
T Consensus 86 ~~~iiDtPGh~~-------f~~~~~~~~--~~aD~~ilVvda~~g-~~~~sf~~~~qt~~~~~~~~~-~~v---~~iivv 151 (458)
T 1f60_A 86 QVTVIDAPGHRD-------FIKNMITGT--SQADCAILIIAGGVG-EFEAGISKDGQTREHALLAFT-LGV---RQLIVA 151 (458)
T ss_dssp EEEEEECCCCTT-------HHHHHHHSS--SCCSEEEEEEECSHH-HHHHHTCTTSHHHHHHHHHHH-TTC---CEEEEE
T ss_pred eEEEEECCCcHH-------HHHHHHhhh--hhCCEEEEEEeCCcC-ccccccCcchhHHHHHHHHHH-cCC---CeEEEE
Confidence 999999999742 222333222 689999999666531 111 22333332222 221 359999
Q ss_pred EeCcCCC
Q 022358 159 LTHAQLC 165 (298)
Q Consensus 159 ~tk~D~~ 165 (298)
+||+|+.
T Consensus 152 iNK~Dl~ 158 (458)
T 1f60_A 152 VNKMDSV 158 (458)
T ss_dssp EECGGGG
T ss_pred EEccccc
Confidence 9999985
No 170
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.26 E-value=1.6e-11 Score=117.68 Aligned_cols=115 Identities=14% Similarity=0.150 Sum_probs=73.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccc---------------ccC------CCCcceeEEEEEEEECCeEEEEEeCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVT---------------VNS------FQSEALRPVMVSRSKGGFTLNIIDTPG 94 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~---------------~~~------~~~~t~~~~~~~~~~~g~~l~viDTPG 94 (298)
+..+|+++|.+|+|||||+|+|++..... +.. ..+.|.........+.+..+.+|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 46899999999999999999999642111 000 111122222345667889999999999
Q ss_pred CCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 95 LVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 95 ~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..+.. .... .++ ..+|++++|++... ........+++.+... ..|+++|+||+|+.
T Consensus 92 ~~df~---~~~~----~~l--~~aD~~IlVvDa~~-g~~~~t~~~~~~~~~~-----~ipiivviNK~Dl~ 147 (529)
T 2h5e_A 92 HEDFS---EDTY----RTL--TAVDCCLMVIDAAK-GVEDRTRKLMEVTRLR-----DTPILTFMNKLDRD 147 (529)
T ss_dssp STTCC---HHHH----HGG--GGCSEEEEEEETTT-CSCHHHHHHHHHHTTT-----TCCEEEEEECTTSC
T ss_pred ChhHH---HHHH----HHH--HHCCEEEEEEeCCc-cchHHHHHHHHHHHHc-----CCCEEEEEcCcCCc
Confidence 96543 1222 222 58999999977654 3444444444433322 27899999999985
No 171
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.25 E-value=1.8e-12 Score=123.09 Aligned_cols=115 Identities=12% Similarity=0.096 Sum_probs=76.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhc
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~ 115 (298)
++.+|+++|.+++|||||+|+|++..+. .+..++.|.....+...+++..+++|||||..+...... . ..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~-~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~-------~--~~ 72 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVA-SGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRA-------R--GA 72 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHS-BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBC-------S--SS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCc-cccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHH-------H--HH
Confidence 6789999999999999999999875432 222233333333334455777899999999876543221 1 12
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 116 ~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
..+|++++|++.+. ...+...+.+..+... ..|+++++||+|+..
T Consensus 73 ~~aD~aILVVda~~-g~~~qT~e~l~~~~~~-----~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 73 QATDIVVLVVAADD-GVMPQTIEAIQHAKAA-----QVPVVVAVNKIDKPE 117 (501)
T ss_dssp BSCSSEEEEEETTT-BSCTTTHHHHHHHHHT-----TCCEEEEEECSSSST
T ss_pred hhCCEEEEEeeccc-CccHHHHHHHHHHHhc-----CceEEEEEEeccccc
Confidence 57899999987765 2333344444444332 278999999999853
No 172
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.25 E-value=3.5e-13 Score=123.83 Aligned_cols=139 Identities=19% Similarity=0.199 Sum_probs=81.1
Q ss_pred hhhHHHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCC------cccccCCCCcceeEEEEEEEECCeEEEEE
Q 022358 17 SATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGER------VVTVNSFQSEALRPVMVSRSKGGFTLNII 90 (298)
Q Consensus 17 ~~~~~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~------~~~~~~~~~~t~~~~~~~~~~~g~~l~vi 90 (298)
.....++.+++..+.+.. ...+|+++|.+|+|||||+|+|++.. ...++..+++|.....+... ..+.++
T Consensus 141 A~~g~gi~~L~~~l~~~~-~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~~li 216 (368)
T 3h2y_A 141 AAKGQGIAELADAIEYYR-GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD---EESSLY 216 (368)
T ss_dssp TTTCTTHHHHHHHHHHHH-TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS---SSCEEE
T ss_pred CCCCcCHHHHHhhhhhhc-ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec---CCeEEE
Confidence 334444555555554321 34789999999999999999999863 33456777777665554322 238999
Q ss_pred eCCCCCCCCcCcHH-HHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 91 DTPGLVEAGYVNYQ-ALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 91 DTPG~~~~~~~~~~-~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
||||+.+.....+. ..+.+..+.....++.++|+++.+..-+.. ....+..+. + ...|+++|+||+|..
T Consensus 217 DtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g-~l~~~d~l~---~--~~~~~~~v~nk~d~~ 286 (368)
T 3h2y_A 217 DTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFS-GLARFDYVS---G--GRRAFTCHFSNRLTI 286 (368)
T ss_dssp ECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEET-TTEEEEEEE---S--SSEEEEEEECTTSCE
T ss_pred eCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEc-ceEEEEEec---C--CCceEEEEecCcccc
Confidence 99999876532221 122333334446889999995543221111 111111111 1 237999999999985
No 173
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.24 E-value=3.6e-13 Score=123.78 Aligned_cols=137 Identities=16% Similarity=0.189 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCC-----CcccccCCCCcceeEEEEEEEECCeEEEEEeCC
Q 022358 19 TQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE-----RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTP 93 (298)
Q Consensus 19 ~~~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~-----~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTP 93 (298)
...++.+++..+.+.. ...+|+++|.+|+|||||+|+|++. ....++..+++|.....+... ..+.++|||
T Consensus 145 ~g~gi~~L~~~I~~~~-~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~~liDtP 220 (369)
T 3ec1_A 145 KGIGMAKVMEAINRYR-EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE---SGATLYDTP 220 (369)
T ss_dssp TTBTHHHHHHHHHHHH-TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS---TTCEEEECC
T ss_pred CCCCHHHHHHHHHhhc-ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC---CCeEEEeCC
Confidence 3334444444444321 3468999999999999999999987 445667788888766554322 247999999
Q ss_pred CCCCCCcCcHHH-HHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 94 GLVEAGYVNYQA-LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 94 G~~~~~~~~~~~-~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
|+.+.....+.. .+.+..+.....+|.++|+++...+-+.. ....+..+ .+. ..|+++++||+|..
T Consensus 221 G~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g-~l~~l~~l---~~~--~~~~~~v~~k~d~~ 287 (369)
T 3ec1_A 221 GIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFG-GLARLDYI---KGG--RRSFVCYMANELTV 287 (369)
T ss_dssp SCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEET-TTEEEEEE---ESS--SEEEEEEECTTSCE
T ss_pred CcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEEC-CEEEEEEc---cCC--CceEEEEecCCccc
Confidence 998754222111 11222233346889999996553221110 11111111 112 37899999999975
No 174
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.24 E-value=3.1e-11 Score=108.41 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=68.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 118 (298)
||+++|.+|+||||+++.+++............|......... ...++.+|||||..+.....-.....+ .++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yy------r~a 73 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLF------KSV 73 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHH------TTC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhc------cCC
Confidence 5899999999999999988865322111111122211111121 346899999999976532100011112 689
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 119 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 119 d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
++++||++++.. +...-..+.+.+..........|+++|.||+|+.
T Consensus 74 ~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~ 119 (331)
T 3r7w_B 74 GALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGL 119 (331)
T ss_dssp SEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSS
T ss_pred CEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccC
Confidence 999999777653 3333233322232221111138999999999995
No 175
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.23 E-value=3.9e-11 Score=118.69 Aligned_cols=115 Identities=16% Similarity=0.163 Sum_probs=77.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccc-----c------cC------CCCcceeEEEEEEEECCeEEEEEeCCCCCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVT-----V------NS------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 98 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~-----~------~~------~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~ 98 (298)
+..+|+++|.+|+|||||+|+|++..... + .. ..+.|.........+.+..+.+|||||..+.
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 45799999999999999999999421100 0 11 1122333334456778899999999999764
Q ss_pred CcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 99 GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
. .+....+ ..+|++|+|++... ..+..+...+..+... ..|+++|+||+|+.
T Consensus 89 ~---~~~~~~l------~~aD~~llVvDa~~-g~~~~~~~~~~~~~~~-----~~p~ilviNK~Dl~ 140 (693)
T 2xex_A 89 T---VEVERSL------RVLDGAVTVLDAQS-GVEPQTETVWRQATTY-----GVPRIVFVNKMDKL 140 (693)
T ss_dssp C---HHHHHHH------HHCSEEEEEEETTT-BSCHHHHHHHHHHHHT-----TCCEEEEEECTTST
T ss_pred H---HHHHHHH------HHCCEEEEEECCCC-CCcHHHHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence 3 2333333 35899999977654 4666666666665543 27999999999985
No 176
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.22 E-value=4.3e-11 Score=105.27 Aligned_cols=123 Identities=21% Similarity=0.303 Sum_probs=73.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccC-------CCCcce-eEEEEEEEEC--CeEEEEEeCCCCCCCCcCc---H
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNS-------FQSEAL-RPVMVSRSKG--GFTLNIIDTPGLVEAGYVN---Y 103 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~~-------~~~~t~-~~~~~~~~~~--g~~l~viDTPG~~~~~~~~---~ 103 (298)
.++++++|++|+|||||+|.|+|......+. .+.... ....+..... ...++++|+||++...... +
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 3789999999999999999999864322221 111111 1111111111 2368999999998632211 1
Q ss_pred HHHHHHH----h----hh--------hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 104 QALELIK----G----FL--------LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 104 ~~~~~i~----~----~~--------~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.+.+.+. . .+ ...++++.+|+++.....+++.|.++++.+.+. .++++|+||+|..
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~l 153 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTM 153 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGS
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccC
Confidence 1221111 1 11 123569999996555446888898888877654 7999999999986
No 177
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.22 E-value=2.6e-11 Score=113.82 Aligned_cols=117 Identities=16% Similarity=0.241 Sum_probs=70.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC--ccc------------cc----------------CCCCcceeEEEEEEEECCe
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGER--VVT------------VN----------------SFQSEALRPVMVSRSKGGF 85 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~--~~~------------~~----------------~~~~~t~~~~~~~~~~~g~ 85 (298)
..++|+++|.+|+|||||+|+|++.. ... .+ ...+.|...........+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 56899999999999999999998641 100 00 0123344444445667788
Q ss_pred EEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCC------CCHHHHHHHHHHHHHhCCCCCceEEEEE
Q 022358 86 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR------VDDLDRQIIKAVTGTFGKQIWRKSLLVL 159 (298)
Q Consensus 86 ~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~------~~~~~~~~l~~l~~~~~~~~~~~~ivV~ 159 (298)
.+.+|||||..+. ...+.... ..+|++++|++.+... ......+.+..+.. .+. .++++|+
T Consensus 85 ~~~iiDtpG~~~f-------~~~~~~~~--~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~---~~iivvi 151 (435)
T 1jny_A 85 FFTIIDAPGHRDF-------VKNMITGA--SQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGL---DQLIVAV 151 (435)
T ss_dssp EEEECCCSSSTTH-------HHHHHHTS--SCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTC---TTCEEEE
T ss_pred EEEEEECCCcHHH-------HHHHHhhh--hhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeEEEEE
Confidence 9999999998542 22233222 6899999997776521 11122333332322 221 4789999
Q ss_pred eCcCCC
Q 022358 160 THAQLC 165 (298)
Q Consensus 160 tk~D~~ 165 (298)
||+|+.
T Consensus 152 NK~Dl~ 157 (435)
T 1jny_A 152 NKMDLT 157 (435)
T ss_dssp ECGGGS
T ss_pred EcccCC
Confidence 999985
No 178
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.21 E-value=5.3e-11 Score=110.57 Aligned_cols=125 Identities=18% Similarity=0.219 Sum_probs=69.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccc--cC-CCCcceeEEEEEEEECC--eEEEEEeCCCCCCCCcC---------
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTV--NS-FQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYV--------- 101 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~--~~-~~~~t~~~~~~~~~~~g--~~l~viDTPG~~~~~~~--------- 101 (298)
..++++|+|++|+|||||+|.|+|..+... .. .++.+.....+.....+ ..++++||||++..-..
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 446799999999999999999999853211 11 12222222222222222 26899999999763211
Q ss_pred --cHHHHHHHHhhh---------hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCCC
Q 022358 102 --NYQALELIKGFL---------LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (298)
Q Consensus 102 --~~~~~~~i~~~~---------~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~~ 166 (298)
...+...+.... .+.++|+++|++......++..|.++++.|.. ..|+|+|+||+|...
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~~------~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDS------KVNIIPIIAKADAIS 190 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTCS------CSEEEEEESCGGGSC
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHhh------CCCEEEEEcchhccc
Confidence 011111122211 11235666655333333488888877777651 289999999999863
No 179
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.21 E-value=3.7e-11 Score=106.32 Aligned_cols=67 Identities=21% Similarity=0.348 Sum_probs=44.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHH
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ 104 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~ 104 (298)
..+++|+++|.+|+|||||+|+|+|.....++..+++|.....+.. +..+.++||||+......+.+
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~ 184 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV---GKELELLDTPGILWPKFEDEL 184 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE---TTTEEEEECCCCCCSCCCCHH
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe---CCCEEEEECcCcCCCCCCCHH
Confidence 4678999999999999999999999987788888887776543322 447899999999887655544
No 180
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.20 E-value=1.2e-10 Score=112.98 Aligned_cols=114 Identities=14% Similarity=0.139 Sum_probs=66.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccc--------C------CCCcceeEEEEEEEEC---C--eEEEEEeCCCCCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVN--------S------FQSEALRPVMVSRSKG---G--FTLNIIDTPGLVE 97 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~--------~------~~~~t~~~~~~~~~~~---g--~~l~viDTPG~~~ 97 (298)
-.+|+++|.+|+|||||+++|++....... . ..+.|.........+. + ..+.+|||||..+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 468999999999999999999853211000 0 0111221111223232 2 5789999999965
Q ss_pred CCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 98 AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.. .+....+ ..+|++++|++.+. ..+......+...... ..|+++|+||+|+.
T Consensus 86 F~---~ev~r~l------~~aD~aILVVDa~~-gv~~qt~~~~~~a~~~-----~ipiIvviNKiDl~ 138 (600)
T 2ywe_A 86 FS---YEVSRAL------AACEGALLLIDASQ-GIEAQTVANFWKAVEQ-----DLVIIPVINKIDLP 138 (600)
T ss_dssp GH---HHHHHHH------HTCSEEEEEEETTT-BCCHHHHHHHHHHHHT-----TCEEEEEEECTTST
T ss_pred HH---HHHHHHH------HhCCEEEEEEECCC-CccHHHHHHHHHHHHC-----CCCEEEEEeccCcc
Confidence 32 1222222 47899999977654 3444444444333332 27899999999985
No 181
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.19 E-value=6.2e-11 Score=105.87 Aligned_cols=124 Identities=19% Similarity=0.286 Sum_probs=63.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCC------CcceeE--EEEEEEEC--CeEEEEEeCCCCCCCCcC---c
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQ------SEALRP--VMVSRSKG--GFTLNIIDTPGLVEAGYV---N 102 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~------~~t~~~--~~~~~~~~--g~~l~viDTPG~~~~~~~---~ 102 (298)
-.++|+|+|++|+|||||+|.|+|......+..+ ..+... ..+..... ...++++||||+++.... -
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4689999999999999999999987432222111 011111 11112222 347899999999542110 0
Q ss_pred HHHH--------HHHHhh-------hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 103 YQAL--------ELIKGF-------LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 103 ~~~~--------~~i~~~-------~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.... ..++.. +...+++++||++......++..+.++++.+. .. .++++|+||+|+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~----~~--~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH----NK--VNIVPVIAKADTL 168 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT----TT--SCEEEEECCGGGS
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH----hc--CCEEEEEEeCCCC
Confidence 0111 111111 12245678888865544347777755544442 21 6899999999985
No 182
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.19 E-value=1.6e-12 Score=126.27 Aligned_cols=117 Identities=12% Similarity=0.079 Sum_probs=56.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccC------------------------------CCCcceeEEEEEEEECCe
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNS------------------------------FQSEALRPVMVSRSKGGF 85 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~------------------------------~~~~t~~~~~~~~~~~g~ 85 (298)
..++|+++|.+|+|||||+|+|++........ .++.|...........+.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 45799999999999999999997532111100 123344444445556778
Q ss_pred EEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCC----CC--CHHHHHHHHHHHHHhCCCCCceEEEEE
Q 022358 86 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAY----RV--DDLDRQIIKAVTGTFGKQIWRKSLLVL 159 (298)
Q Consensus 86 ~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~----~~--~~~~~~~l~~l~~~~~~~~~~~~ivV~ 159 (298)
.+.||||||..+..... ... ...+|++|+|++.+.. .+ .....+.+..+... +. .++|+|+
T Consensus 256 ~i~iiDTPGh~~f~~~~---~~~------~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l-gi---p~iIvvi 322 (592)
T 3mca_A 256 IYEIGDAPGHRDFISGM---IAG------ASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL-GI---SEIVVSV 322 (592)
T ss_dssp ---CCEEESSSEEEEEC---CC-------------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS-SC---CCEEEEE
T ss_pred EEEEEECCChHHHHHHH---HHH------HhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc-CC---CeEEEEE
Confidence 99999999986532111 111 1478999999766531 12 33344444444433 21 3599999
Q ss_pred eCcCCC
Q 022358 160 THAQLC 165 (298)
Q Consensus 160 tk~D~~ 165 (298)
||+|+.
T Consensus 323 NKiDl~ 328 (592)
T 3mca_A 323 NKLDLM 328 (592)
T ss_dssp ECGGGG
T ss_pred eccccc
Confidence 999985
No 183
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.19 E-value=6.6e-11 Score=114.82 Aligned_cols=114 Identities=17% Similarity=0.134 Sum_probs=64.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccc--------C------CCCcceeEEEEEEEEC-----CeEEEEEeCCCCCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVN--------S------FQSEALRPVMVSRSKG-----GFTLNIIDTPGLVE 97 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~~~~~~--------~------~~~~t~~~~~~~~~~~-----g~~l~viDTPG~~~ 97 (298)
-.+|+++|..|+|||||+++|+........ . ..+.|.........+. +..+.+|||||..+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 468999999999999999999863211100 0 0112222222333333 36889999999854
Q ss_pred CCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 98 AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.. .+....+ ..+|++++|++.+. .........+...... ..|+++|+||+|+.
T Consensus 84 F~---~ev~~~l------~~aD~aILVVDa~~-gv~~qt~~~~~~~~~~-----~ipiIvViNKiDl~ 136 (599)
T 3cb4_D 84 FS---YEVSRSL------AACEGALLVVDAGQ-GVEAQTLANCYTAMEM-----DLEVVPVLNKIDLP 136 (599)
T ss_dssp GH---HHHHHHH------HHCSEEEEEEETTT-CCCTHHHHHHHHHHHT-----TCEEEEEEECTTST
T ss_pred HH---HHHHHHH------HHCCEEEEEEECCC-CCCHHHHHHHHHHHHC-----CCCEEEeeeccCcc
Confidence 32 1222222 36799999977654 3444444433333322 27999999999985
No 184
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.18 E-value=1.1e-10 Score=113.29 Aligned_cols=114 Identities=11% Similarity=0.100 Sum_probs=73.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCccee--EEEEEEE----------------ECCeEEEEEeCCCCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALR--PVMVSRS----------------KGGFTLNIIDTPGLVE 97 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~--~~~~~~~----------------~~g~~l~viDTPG~~~ 97 (298)
++.+|+++|.+|+|||||+|+|++..+.... ..+.|.+ ....... +....+.+|||||..+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e-~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASRE-AGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCcccc-CCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 5689999999999999999999976432111 1111211 1111111 1122599999999976
Q ss_pred CCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 98 AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
...... + ....+|++++|++.+. .+.....+.+..+... ..|+++|+||+|+.
T Consensus 83 F~~~~~-------r--~~~~aD~aILVvDa~~-Gv~~qT~e~l~~l~~~-----~vPiIVViNKiDl~ 135 (594)
T 1g7s_A 83 FTTLRK-------R--GGALADLAILIVDINE-GFKPQTQEALNILRMY-----RTPFVVAANKIDRI 135 (594)
T ss_dssp CTTSBC-------S--SSBSCSEEEEEEETTT-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGS
T ss_pred HHHHHH-------H--HHhhCCEEEEEEECCC-CccHhHHHHHHHHHHc-----CCeEEEEecccccc
Confidence 543221 1 1157899999977765 4555566666655543 27999999999985
No 185
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.17 E-value=1.3e-10 Score=114.88 Aligned_cols=115 Identities=13% Similarity=0.110 Sum_probs=74.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcc-----ccc------C------CCCcceeEEEEEEEECCeEEEEEeCCCCCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVV-----TVN------S------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 98 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~-----~~~------~------~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~ 98 (298)
+..+|+++|.+|+|||||+|+|+..... .+. . ..+.|.........+.+..+.+|||||..+.
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 4589999999999999999999832100 000 0 1122333334456678899999999999653
Q ss_pred CcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 99 GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
. .+....+ ..+|++++|++... ..+......+..+... ..|+++|+||+|+.
T Consensus 91 ~---~~~~~~l------~~aD~~ilVvDa~~-g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~ 142 (691)
T 1dar_A 91 T---IEVERSM------RVLDGAIVVFDSSQ-GVEPQSETVWRQAEKY-----KVPRIAFANKMDKT 142 (691)
T ss_dssp H---HHHHHHH------HHCSEEEEEEETTT-CSCHHHHHHHHHHHHT-----TCCEEEEEECTTST
T ss_pred H---HHHHHHH------HHCCEEEEEEECCC-CcchhhHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence 2 2333333 36899999977664 3555555555555443 28999999999985
No 186
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.16 E-value=1.4e-10 Score=106.47 Aligned_cols=101 Identities=15% Similarity=0.197 Sum_probs=69.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 118 (298)
+|+++|.+++|||||+|+|+. .+.|.....+..+..+..+.+|||||..+. ...+...+ ..+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~---------~giTi~~~~~~~~~~~~~i~iiDtPGh~~f---~~~~~~~~------~~a 84 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK---------KGTSSDITMYNNDKEGRNMVFVDAHSYPKT---LKSLITAL------NIS 84 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE---------EEEESSSEEEEECSSSSEEEEEECTTTTTC---HHHHHHHH------HTC
T ss_pred EEEEECCCCCCHHHHHHHHHh---------CCEEEEeeEEEEecCCeEEEEEECCChHHH---HHHHHHHH------HHC
Confidence 999999999999999999991 122333334556667889999999998643 12222222 489
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceE-EEEEe-CcCC
Q 022358 119 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKS-LLVLT-HAQL 164 (298)
Q Consensus 119 d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~-ivV~t-k~D~ 164 (298)
|++++|++ +. .......+.+..+... + .|. ++|+| |+|+
T Consensus 85 D~ailVvd-~~-g~~~qt~e~~~~~~~~-~----i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 85 DIAVLCIP-PQ-GLDAHTGECIIALDLL-G----FKHGIIALTRSDST 125 (370)
T ss_dssp SEEEEEEC-TT-CCCHHHHHHHHHHHHT-T----CCEEEEEECCGGGS
T ss_pred CEEEEEEc-CC-CCcHHHHHHHHHHHHc-C----CCeEEEEEEeccCC
Confidence 99999976 43 3455555555554443 2 455 89999 9997
No 187
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.16 E-value=4.8e-10 Score=114.53 Aligned_cols=117 Identities=11% Similarity=0.096 Sum_probs=74.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccc----------cc-----CCCCcceeEEEEEEEECCeEEEEEeCCCCCCC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVT----------VN-----SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 98 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~----------~~-----~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~ 98 (298)
....++|+++|.+++|||||+|+|++..... .. ...+.|...........+..+.+|||||..+
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed- 371 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD- 371 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH-
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH-
Confidence 3456899999999999999999998741100 00 0112222222233455678999999999742
Q ss_pred CcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCce-EEEEEeCcCCC
Q 022358 99 GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC 165 (298)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~tk~D~~ 165 (298)
+...+.... ..+|++++|++.+. .......+.+..+... + .| +|+|+||+|+.
T Consensus 372 ------F~~~mi~ga--s~AD~aILVVDAtd-Gv~~QTrEhL~ll~~l-g----IP~IIVVINKiDLv 425 (1289)
T 3avx_A 372 ------YVKNMITGA--AQMDGAILVVAATD-GPMPQTREHILLGRQV-G----VPYIIVFLNKCDMV 425 (1289)
T ss_dssp ------HHHHHHHTS--CCCSEEEEEEETTT-CSCTTHHHHHHHHHHH-T----CSCEEEEEECCTTC
T ss_pred ------HHHHHHHHH--hhCCEEEEEEcCCc-cCcHHHHHHHHHHHHc-C----CCeEEEEEeecccc
Confidence 333333322 68999999987765 3344455555555443 2 56 89999999985
No 188
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.15 E-value=4.7e-11 Score=112.97 Aligned_cols=117 Identities=10% Similarity=0.039 Sum_probs=65.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccc------------------------ccC------CCCcceeEEEEEEEECC
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVT------------------------VNS------FQSEALRPVMVSRSKGG 84 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~~~~------------------------~~~------~~~~t~~~~~~~~~~~g 84 (298)
...++|+++|.+++|||||+|+|++..... +.. ..+.|..........++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 356899999999999999999997421100 000 11223222223455678
Q ss_pred eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCC----C--HHHHHHHHHHHHHhCCCCCce-EEE
Q 022358 85 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV----D--DLDRQIIKAVTGTFGKQIWRK-SLL 157 (298)
Q Consensus 85 ~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~----~--~~~~~~l~~l~~~~~~~~~~~-~iv 157 (298)
..+.+|||||..+.. ..+.... ..+|++++|++.+...+ . ....+.+..+.. .+ .| +++
T Consensus 121 ~~~~iiDtPGh~~f~-------~~~~~~~--~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~----vp~iiv 186 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYV-------TNMINGA--SQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QG----INHLVV 186 (467)
T ss_dssp EEEEECCCCC------------------T--TSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TT----CSSEEE
T ss_pred eEEEEEECCCcHHHH-------HHHHhhc--ccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cC----CCEEEE
Confidence 899999999985432 1222111 68999999977764211 1 122333333322 22 44 999
Q ss_pred EEeCcCCC
Q 022358 158 VLTHAQLC 165 (298)
Q Consensus 158 V~tk~D~~ 165 (298)
|+||+|+.
T Consensus 187 viNK~Dl~ 194 (467)
T 1r5b_A 187 VINKMDEP 194 (467)
T ss_dssp EEECTTST
T ss_pred EEECccCC
Confidence 99999984
No 189
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.15 E-value=4e-10 Score=102.91 Aligned_cols=126 Identities=19% Similarity=0.224 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHh------CCCcccccCCCCcceeE----------------
Q 022358 18 ATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVI------GERVVTVNSFQSEALRP---------------- 75 (298)
Q Consensus 18 ~~~~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~------g~~~~~~~~~~~~t~~~---------------- 75 (298)
.......+++..+.....+..+|+++|.+|+|||||+|+|. |.++..+..-++.+...
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~ 139 (355)
T 3p32_A 60 DHREQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVH 139 (355)
T ss_dssp HHHHHHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTC
T ss_pred hhHHHHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccC
Confidence 33344555666666555678899999999999999999996 33332222111111100
Q ss_pred -EEEE----------------------EEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCC
Q 022358 76 -VMVS----------------------RSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV 132 (298)
Q Consensus 76 -~~~~----------------------~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~ 132 (298)
..+. ....+..+++|||||+... .. .+. ..+|++++|++.....
T Consensus 140 ~~~~i~~~~~~~~~~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~------~~-~~~-----~~aD~vl~V~d~~~~~- 206 (355)
T 3p32_A 140 PNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVGQS------EV-AVA-----NMVDTFVLLTLARTGD- 206 (355)
T ss_dssp TTEEEECCC--CCHHHHHHHHHHHHHHHHHTTCCEEEEEECSCSSH------HH-HHH-----TTCSEEEEEEESSTTC-
T ss_pred CCeeEEECCCCccccchhHHHHHHHHHHhhCCCCEEEEeCCCCCcH------HH-HHH-----HhCCEEEEEECCCCCc-
Confidence 0000 0225678999999997531 11 111 6899999996654311
Q ss_pred CHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 133 DDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 133 ~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
. . +.+ ... -...|.++|+||+|+.
T Consensus 207 -~-~-~~l---~~~---~~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 207 -Q-L-QGI---KKG---VLELADIVVVNKADGE 230 (355)
T ss_dssp -T-T-TTC---CTT---SGGGCSEEEEECCCGG
T ss_pred -c-H-HHH---HHh---HhhcCCEEEEECCCCc
Confidence 1 1 111 110 1126899999999984
No 190
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.13 E-value=1.1e-10 Score=108.46 Aligned_cols=120 Identities=20% Similarity=0.228 Sum_probs=77.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC-eEEEEEeCCCCCCCCc----CcHHHHHHHHhh
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEAGY----VNYQALELIKGF 112 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~l~viDTPG~~~~~~----~~~~~~~~i~~~ 112 (298)
-.|+|+|.+|||||||+|+|++... .+...+.+|..+........+ ..++++||||+.+... ....+++.+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~--- 233 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHI--- 233 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH---
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHH---
Confidence 3589999999999999999999865 455566666666665666664 7899999999975321 122232222
Q ss_pred hhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 113 ~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..++++|++++++ ...-..-....+.+..+...-..+|.++|+||+|..
T Consensus 234 ---era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 234 ---ARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp ---TSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred ---HHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence 5789999998776 121111112222332221000127899999999984
No 191
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.12 E-value=4.1e-10 Score=111.49 Aligned_cols=115 Identities=14% Similarity=0.113 Sum_probs=73.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCc--cc---c------cC------CCCcceeEEEEEEEECC-------eEEEEEe
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERV--VT---V------NS------FQSEALRPVMVSRSKGG-------FTLNIID 91 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~--~~---~------~~------~~~~t~~~~~~~~~~~g-------~~l~viD 91 (298)
+..+|+++|..|+|||||+++|+.... .. + .. ..+.|.........+.+ ..+.+||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 457999999999999999999975321 00 0 00 11223333334455555 7899999
Q ss_pred CCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 92 TPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 92 TPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
|||..+.. .+....+ ..+|++|+|++... .........++.+... ..|+++|+||+|+.
T Consensus 89 TPG~~df~---~~~~~~l------~~aD~aIlVvDa~~-gv~~qt~~~~~~~~~~-----~ip~ilviNKiD~~ 147 (704)
T 2rdo_7 89 TPGHVDFT---IEVERSM------RVLDGAVMVYCAVG-GVQPQSETVWRQANKY-----KVPRIAFVNKMDRM 147 (704)
T ss_pred CCCccchH---HHHHHHH------HHCCEEEEEEeCCC-CCcHHHHHHHHHHHHc-----CCCEEEEEeCCCcc
Confidence 99996532 1222223 46899999976654 3444444444443332 27999999999985
No 192
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.11 E-value=1.4e-10 Score=116.89 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=73.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccC---------------CCCcceeEEEEEEEEC----------------C
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNS---------------FQSEALRPVMVSRSKG----------------G 84 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~---------------~~~~t~~~~~~~~~~~----------------g 84 (298)
...+|+++|.+|+|||||+|+|++........ ..+.|.........+. +
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 45799999999999999999998653211111 0111221112222232 5
Q ss_pred eEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCC
Q 022358 85 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (298)
Q Consensus 85 ~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 164 (298)
..+.+|||||..+... +....+ ..+|++|+|++... ..+......+..+... ..|+++|+||+|+
T Consensus 98 ~~i~liDTPG~~df~~---~~~~~l------~~aD~ailVvDa~~-g~~~qt~~~~~~~~~~-----~~p~ilviNK~D~ 162 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSS---EVTAAL------RVTDGALVVVDTIE-GVCVQTETVLRQALGE-----RIKPVVVINKVDR 162 (842)
T ss_dssp EEEEEECCCCCCSSCH---HHHHHH------HTCSEEEEEEETTT-BSCHHHHHHHHHHHHT-----TCEEEEEEECHHH
T ss_pred ceEEEEECcCchhhHH---HHHHHH------HhCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCeEEEEECCCc
Confidence 7899999999976442 333333 47899999977664 3555555544443322 2799999999998
Q ss_pred C
Q 022358 165 C 165 (298)
Q Consensus 165 ~ 165 (298)
.
T Consensus 163 ~ 163 (842)
T 1n0u_A 163 A 163 (842)
T ss_dssp H
T ss_pred c
Confidence 4
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.10 E-value=8.6e-11 Score=107.15 Aligned_cols=85 Identities=19% Similarity=0.223 Sum_probs=58.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC-----------------eEEEEEeCCCCCCCCc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-----------------FTLNIIDTPGLVEAGY 100 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~l~viDTPG~~~~~~ 100 (298)
++|+++|.+|+|||||+|+|++.. +.+++++++|..+......+.+ ..+.+|||||+.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 689999999999999999999987 4566677777665544444443 4799999999976421
Q ss_pred ----CcHHHHHHHHhhhhcCCCCEEEEEEeCCC
Q 022358 101 ----VNYQALELIKGFLLNKTIDVLLYADRLDA 129 (298)
Q Consensus 101 ----~~~~~~~~i~~~~~~~~~d~vl~v~~~d~ 129 (298)
...+++..+ ..+|++++|++...
T Consensus 82 ~~~gl~~~fl~~i------r~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANI------RETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHH------HTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHH------HhcCeEEEEEecCC
Confidence 111233333 48999999977754
No 194
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.00 E-value=2e-10 Score=105.75 Aligned_cols=88 Identities=23% Similarity=0.241 Sum_probs=50.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC-----------------eEEEEEeCCCCC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-----------------FTLNIIDTPGLV 96 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~l~viDTPG~~ 96 (298)
-...++|+++|.+|+|||||+|+|++... .++.++++|..+......+.+ ..+.+|||||+.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 34568999999999999999999999876 667777777766555544433 358999999998
Q ss_pred CCCcCc----HHHHHHHHhhhhcCCCCEEEEEEeCC
Q 022358 97 EAGYVN----YQALELIKGFLLNKTIDVLLYADRLD 128 (298)
Q Consensus 97 ~~~~~~----~~~~~~i~~~~~~~~~d~vl~v~~~d 128 (298)
...... ...+..+ ..+|++++|++..
T Consensus 98 ~~as~~~glg~~~l~~i------r~aD~Il~VvD~~ 127 (396)
T 2ohf_A 98 KGAHNGQGLGNAFLSHI------SACDGIFHLTRAF 127 (396)
T ss_dssp ---------CCHHHHHH------HTSSSEEEEEEC-
T ss_pred cccchhhHHHHHHHHHH------HhcCeEEEEEecC
Confidence 643321 1233333 4889999997664
No 195
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.00 E-value=5.7e-10 Score=101.66 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g 59 (298)
....|+++|.+|||||||+|+|++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 368999999999999999999996
No 196
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.99 E-value=6.6e-10 Score=102.44 Aligned_cols=87 Identities=17% Similarity=0.237 Sum_probs=67.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC-----------------eEEEEEeCCCCCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-----------------FTLNIIDTPGLVEA 98 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~l~viDTPG~~~~ 98 (298)
...+++++|.+|+|||||+|+|+|...+.++.++++|..+......+.+ ..+.++||||+...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 4689999999999999999999998876778888888877766666655 46899999999864
Q ss_pred CcC----cHHHHHHHHhhhhcCCCCEEEEEEeCC
Q 022358 99 GYV----NYQALELIKGFLLNKTIDVLLYADRLD 128 (298)
Q Consensus 99 ~~~----~~~~~~~i~~~~~~~~~d~vl~v~~~d 128 (298)
... ...++..+ ..+|++++|++..
T Consensus 99 ~s~~e~L~~~fl~~i------r~~d~il~Vvd~~ 126 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHV------RAVDAIYQVVRAF 126 (392)
T ss_dssp CCSSSSSCHHHHHHH------TTCSEEEEEEECC
T ss_pred CcHHHHHHHHHHHHH------HHHHHHHHHHhcc
Confidence 332 22344333 5789999997764
No 197
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.99 E-value=5.8e-10 Score=101.25 Aligned_cols=120 Identities=22% Similarity=0.250 Sum_probs=67.9
Q ss_pred HHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhC------CCcccccCCCCccee-------------------EEEE
Q 022358 24 IELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIG------ERVVTVNSFQSEALR-------------------PVMV 78 (298)
Q Consensus 24 ~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g------~~~~~~~~~~~~t~~-------------------~~~~ 78 (298)
..++..+.....+...|+++|++|+||||++|.|.+ .++..++..+..+.. ....
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~ 122 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIR 122 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEE
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceee
Confidence 344444444445678999999999999999999963 333322221211110 0000
Q ss_pred E--------------------EEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHH
Q 022358 79 S--------------------RSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQ 138 (298)
Q Consensus 79 ~--------------------~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~ 138 (298)
. ..+.+.+++++||||+.+.. . .+. ..+|++++|++.... . +.+
T Consensus 123 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~---~----~~~-----~~aD~vl~Vvd~~~~--~--~~~ 186 (341)
T 2p67_A 123 PVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSE---T----EVA-----RMVDCFISLQIAGGG--D--DLQ 186 (341)
T ss_dssp EECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHH---H----HHH-----TTCSEEEEEECC----------C
T ss_pred cCccccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchH---H----HHH-----HhCCEEEEEEeCCcc--H--HHH
Confidence 0 01457789999999986421 1 121 689999999655321 1 111
Q ss_pred HHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 139 IIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 139 ~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.++. ... ..|.++|+||+|+.
T Consensus 187 ~l~~--~~~----~~p~ivv~NK~Dl~ 207 (341)
T 2p67_A 187 GIKK--GLM----EVADLIVINKDDGD 207 (341)
T ss_dssp CCCH--HHH----HHCSEEEECCCCTT
T ss_pred HHHH--hhh----cccCEEEEECCCCC
Confidence 1111 111 15789999999984
No 198
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.98 E-value=1.3e-09 Score=105.34 Aligned_cols=106 Identities=20% Similarity=0.202 Sum_probs=61.4
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhCCCccc-ccC-CCCcceeEEEEEE---EECCeEEEEEeCCCCCCCCc--CcHHH
Q 022358 33 ENVNTLTILVMGKGGVGKSSTVNSVIGERVVT-VNS-FQSEALRPVMVSR---SKGGFTLNIIDTPGLVEAGY--VNYQA 105 (298)
Q Consensus 33 ~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~-~~~-~~~~t~~~~~~~~---~~~g~~l~viDTPG~~~~~~--~~~~~ 105 (298)
......+|+|+|.+|+|||||+|+|+|..... ++. ..++|.....+.. ...+..+.++||||+.+... .....
T Consensus 34 i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~ 113 (592)
T 1f5n_A 34 ITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDS 113 (592)
T ss_dssp CCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHH
T ss_pred ccCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHH
Confidence 34466899999999999999999999987532 211 1123332222211 12567899999999987543 11111
Q ss_pred -HHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHH
Q 022358 106 -LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTG 145 (298)
Q Consensus 106 -~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~ 145 (298)
+-.+...+ .++++|- ... .+++.+.+.+..+.+
T Consensus 114 ~~fala~ll----ss~lv~n--~~~-~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 114 WIFALAVLL----SSTFVYN--SIG-TINQQAMDQLYYVTE 147 (592)
T ss_dssp HHHHHHHHH----CSEEEEE--EES-CSSHHHHHTTHHHHT
T ss_pred HHHHHHHHh----cCeEEEE--CCC-CccHHHHHHHHHHHH
Confidence 11122222 2333333 332 477777776655443
No 199
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.98 E-value=4.4e-09 Score=101.22 Aligned_cols=115 Identities=10% Similarity=0.161 Sum_probs=78.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcc---------------cccCC------CCcceeEEEEEEEECCeEEEEEeCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVV---------------TVNSF------QSEALRPVMVSRSKGGFTLNIIDTPG 94 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~---------------~~~~~------~~~t~~~~~~~~~~~g~~l~viDTPG 94 (298)
+.-||.++|..++|||||.-+|+-.... .+.++ .+-|.......+.|++..++++||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 3468999999999999999999722110 01111 11222333456789999999999999
Q ss_pred CCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 95 LVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 95 ~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
..|+.. +..+.+ .-+|.+|+|++... .+......+++...+.. .|.++++||+|..
T Consensus 110 HvDF~~---Ev~raL------~~~DgAvlVvda~~-GV~~qT~~v~~~a~~~~-----lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 110 HQDFSE---DTYRVL------TAVDSALVVIDAAK-GVEAQTRKLMDVCRMRA-----TPVMTFVNKMDRE 165 (548)
T ss_dssp GGGCSH---HHHHHH------HSCSEEEEEEETTT-BSCHHHHHHHHHHHHTT-----CCEEEEEECTTSC
T ss_pred cHHHHH---HHHHHH------HhcCceEEEeecCC-CcccccHHHHHHHHHhC-----CceEEEEecccch
Confidence 987764 444444 37899999955543 46666666666665553 8999999999973
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.96 E-value=5.2e-10 Score=102.41 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=60.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE---------------------CCeEEEEEeCCCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK---------------------GGFTLNIIDTPGLV 96 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~---------------------~g~~l~viDTPG~~ 96 (298)
++|+++|.+|+|||||+|+|++.. ..++.++.+|..+......+ .+..+.+|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 679999999999999999999875 34556666665544433322 34579999999998
Q ss_pred CCCc----CcHHHHHHHHhhhhcCCCCEEEEEEeCCC
Q 022358 97 EAGY----VNYQALELIKGFLLNKTIDVLLYADRLDA 129 (298)
Q Consensus 97 ~~~~----~~~~~~~~i~~~~~~~~~d~vl~v~~~d~ 129 (298)
.... ....++..+ ..+|++++|++...
T Consensus 81 ~~a~~~~~lg~~fl~~i------r~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHI------REVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSSSCTTHHHHHHH------HTCSEEEEEEECCC
T ss_pred ccccccchHHHHHHHHH------HhCCEEEEEEECCC
Confidence 6532 223444444 48899999977754
No 201
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.96 E-value=2e-09 Score=93.66 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=24.3
Q ss_pred CCCccEEEEEcCC---------CCCHHHHHHHHhCC
Q 022358 34 NVNTLTILVMGKG---------GVGKSSTVNSVIGE 60 (298)
Q Consensus 34 ~~~~l~IllvG~~---------g~GKSSliN~l~g~ 60 (298)
....++|+|+|.+ |||||||+|++++.
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 4456999999999 99999999999984
No 202
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.95 E-value=5.9e-09 Score=102.64 Aligned_cols=115 Identities=16% Similarity=0.168 Sum_probs=77.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcc-----cc------cC------CCCcceeEEEEEEEECCeEEEEEeCCCCCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVV-----TV------NS------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 98 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~-----~~------~~------~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~ 98 (298)
...+|+++|++|+|||||+++|++.... .+ .. ..+.|.........+.+..+.+|||||..+.
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 4578999999999999999999943211 00 00 0122334455566778889999999998543
Q ss_pred CcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 99 GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
. ......+ ..+|++++|++... ..+.....+++.+... ..|+++|+||+|+.
T Consensus 88 ~---~~~~~~l------~~ad~~ilVvD~~~-g~~~qt~~~~~~~~~~-----~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 V---GEIRGAL------EAADAALVAVSAEA-GVQVGTERAWTVAERL-----GLPRMVVVTKLDKG 139 (665)
T ss_dssp H---HHHHHHH------HHCSEEEEEEETTT-CSCHHHHHHHHHHHHT-----TCCEEEEEECGGGC
T ss_pred H---HHHHHHH------hhcCcEEEEEcCCc-ccchhHHHHHHHHHHc-----cCCEEEEecCCchh
Confidence 1 2233333 36899999977654 4666666666666553 27999999999984
No 203
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.94 E-value=1.2e-08 Score=94.74 Aligned_cols=116 Identities=22% Similarity=0.215 Sum_probs=68.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCC----CCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSF----QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKG 111 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~----~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~ 111 (298)
....++|+|++|+|||||+|.|+|......+.. ...+.....+.. .....++++|+||++.....-+++++.+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~-~~~~~ltv~D~~g~~~~~~~~~~~L~~~~- 145 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEKMK- 145 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHHTT-
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc-cccCCeeehHhhcccchHHHHHHHHHHcC-
Confidence 557999999999999999999999532211111 111121222221 11236899999999753322233333221
Q ss_pred hhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCC
Q 022358 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (298)
Q Consensus 112 ~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 164 (298)
+ ...+.+++ + +..+....+..+...+.... +|+++|+||.|.
T Consensus 146 -L--~~~~~~~~-l--S~G~~~kqrv~la~aL~~~~-----~p~~lV~tkpdl 187 (413)
T 1tq4_A 146 -F--YEYDFFII-I--SATRFKKNDIDIAKAISMMK-----KEFYFVRTKVDS 187 (413)
T ss_dssp -G--GGCSEEEE-E--ESSCCCHHHHHHHHHHHHTT-----CEEEEEECCHHH
T ss_pred -C--CccCCeEE-e--CCCCccHHHHHHHHHHHhcC-----CCeEEEEecCcc
Confidence 1 23355554 3 33345666677777777642 899999999976
No 204
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.92 E-value=4.2e-10 Score=98.47 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCC
Q 022358 19 TQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 98 (298)
Q Consensus 19 ~~~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~ 98 (298)
...++.+++..+.+.. ++++++|.+|+|||||+|+|+|.....++..+++|.....+. .+..+.++||||+.+.
T Consensus 84 ~~~gi~~L~~~l~~~~---~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~---~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 84 GEPRKVLLKKLSFDRL---ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS---LENGVKILDTPGILYK 157 (262)
T ss_dssp TSCHHHHHHHHCCCTT---CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEE---CTTSCEEESSCEECCC
T ss_pred CCcCHHHHHHHHHHhh---hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE---eCCCEEEEECCCcccC
Confidence 3345555555554322 699999999999999999999988766777777766544322 2347899999999987
Q ss_pred Cc
Q 022358 99 GY 100 (298)
Q Consensus 99 ~~ 100 (298)
..
T Consensus 158 ~~ 159 (262)
T 3cnl_A 158 NI 159 (262)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 205
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.89 E-value=4e-09 Score=100.22 Aligned_cols=118 Identities=17% Similarity=0.168 Sum_probs=68.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------CCCcccccCCC--Ccc---------e-eEEEEEE-----------------
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVI------GERVVTVNSFQ--SEA---------L-RPVMVSR----------------- 80 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~------g~~~~~~~~~~--~~t---------~-~~~~~~~----------------- 80 (298)
.+..|+++|.+|+||||++|.|. |.++..++.-+ ... . ....+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999 77654433210 000 0 0001110
Q ss_pred EECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCce-EEEEE
Q 022358 81 SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVL 159 (298)
Q Consensus 81 ~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~ 159 (298)
...+..++||||||..... ......+......-.+|.+++|++... ..+ .....+.+.+. .| .++|+
T Consensus 180 ~~~~~DvvIIDTpG~~~~~---~~l~~el~~~~~~i~pd~vllVvDa~~-g~~--~~~~a~~~~~~------~~i~gvVl 247 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQE---DSLFEEMLQVANAIQPDNIVYVMDASI-GQA--CEAQAKAFKDK------VDVASVIV 247 (504)
T ss_dssp HHTTCCEEEEEECCCCTTC---HHHHHHHHHHHHHHCCSEEEEEEETTC-CTT--HHHHHHHHHHH------HCCCCEEE
T ss_pred HHCCCcEEEEeCCCCcccc---hhHHHHHHHHHhhhcCceEEEEEeccc-ccc--HHHHHHHHHhh------cCceEEEE
Confidence 1256789999999996432 223333322211127899999955543 122 33444444443 45 48999
Q ss_pred eCcCCC
Q 022358 160 THAQLC 165 (298)
Q Consensus 160 tk~D~~ 165 (298)
||+|..
T Consensus 248 NK~D~~ 253 (504)
T 2j37_W 248 TKLDGH 253 (504)
T ss_dssp ECTTSC
T ss_pred eCCccc
Confidence 999985
No 206
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.77 E-value=1.4e-08 Score=91.99 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=27.2
Q ss_pred HHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhC
Q 022358 25 ELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 25 ~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g 59 (298)
.+++.+.-.-.+...+.++|++|+|||||+|.|.|
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34555554344567899999999999999999983
No 207
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.72 E-value=1.5e-08 Score=85.52 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=29.3
Q ss_pred cCCchhhHHHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 13 QQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 13 ~~l~~~~~~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
+......++...++...+... ...+|+++|.+|+|||||+|+|++.
T Consensus 8 ~~~l~~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 8 QDLLAENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp ---CHHHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHhhcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 333344434344333333322 4579999999999999999999865
No 208
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.68 E-value=1.8e-07 Score=92.77 Aligned_cols=113 Identities=15% Similarity=0.164 Sum_probs=72.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcc-----cc------cCC------CCcceeEEEEEEEEC-------CeEEEEEeCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVV-----TV------NSF------QSEALRPVMVSRSKG-------GFTLNIIDTP 93 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~-----~~------~~~------~~~t~~~~~~~~~~~-------g~~l~viDTP 93 (298)
-||.|+|..++|||||.-+|+-.... .+ .+. .+-|......+..|. +..++++|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 48999999999999999999733110 00 000 011222223344443 5689999999
Q ss_pred CCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 94 GLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 94 G~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
|.-|+.. +....++ -+|.+|+|++... .+......+++...+.. .|.++++||+|..
T Consensus 94 GHvDF~~---Ev~~aLr------~~DgavlvVDave-GV~~qT~~v~~~a~~~~-----lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 94 GHVDFTI---EVERSLR------VLDGAVVVFCGTS-GVEPQSETVWRQANKYG-----VPRIVYVNKMDRQ 150 (709)
T ss_dssp SCTTCHH---HHHHHHH------HCSEEEEEEETTT-CSCHHHHHHHHHHHHHT-----CCEEEEEECSSST
T ss_pred CCcccHH---HHHHHHH------HhCeEEEEEECCC-CCchhHHHHHHHHHHcC-----CCeEEEEcccccc
Confidence 9987653 4444443 5799999955543 46666666666665553 8999999999973
No 209
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.67 E-value=1.8e-07 Score=91.11 Aligned_cols=40 Identities=30% Similarity=0.449 Sum_probs=30.2
Q ss_pred HHHHHHHHhhhcCCC----ccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 22 KLIELLSKLKQENVN----TLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 22 ~l~~~l~~l~~~~~~----~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.+.+.+..+...+.. -..|+|+|++|||||||+|+|.|..
T Consensus 26 ~ll~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 26 PCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp HHHHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCCC
Confidence 455566666654432 2469999999999999999999974
No 210
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.65 E-value=1.1e-08 Score=100.40 Aligned_cols=113 Identities=16% Similarity=0.174 Sum_probs=76.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCc--c---cc------cCCC------CcceeEEEEEEEECCeEEEEEeCCCCCCCCc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERV--V---TV------NSFQ------SEALRPVMVSRSKGGFTLNIIDTPGLVEAGY 100 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~--~---~~------~~~~------~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~ 100 (298)
-||.++|..++|||||..+|+-... . .+ .++. +-|......++.+++..++++||||..|+..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 3789999999999999999972211 0 11 1110 1233333455678899999999999977543
Q ss_pred CcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 101 VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 101 ~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
+....+ .-+|.+++|++... .+.......++...+.. .|.++++||+|..
T Consensus 83 ---Ev~raL------~~~DgavlVVDa~~-GV~~qT~~v~~~a~~~~-----lp~i~~INKmDr~ 132 (638)
T 3j25_A 83 ---EVYRSL------SVLDGAILLISAKD-GVQAQTRILFHALRKMG-----IPTIFFINKIDQN 132 (638)
T ss_dssp ---HHHHHH------TTCSEEECCEESSC-TTCSHHHHHHHHHHHHT-----CSCEECCEECCSS
T ss_pred ---HHHHHH------HHhCEEEEEEeCCC-CCcHHHHHHHHHHHHcC-----CCeEEEEeccccc
Confidence 333333 57899999966554 45555566666666653 7889999999974
No 211
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.60 E-value=3.2e-08 Score=85.75 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=27.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHh-----CCCccccc
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVI-----GERVVTVN 66 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~-----g~~~~~~~ 66 (298)
+.+...+++.|+.|+||||+++.|. |.++..+.
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4456789999999999999999998 77665444
No 212
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.60 E-value=1.6e-07 Score=87.68 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=70.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------CCCcccccCCC--Cc----------ceeEEEEEE-----------------
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVI------GERVVTVNSFQ--SE----------ALRPVMVSR----------------- 80 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~------g~~~~~~~~~~--~~----------t~~~~~~~~----------------- 80 (298)
.+..|+++|.+|+||||+++.|. |.++..+..-+ .. ......+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999987 44443222100 00 000001100
Q ss_pred EECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEe
Q 022358 81 SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT 160 (298)
Q Consensus 81 ~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~t 160 (298)
...+..++||||||... .+.....+++.......+|.+++|+ |+.. ........+.+.+.. ....+|+|
T Consensus 179 ~~~~~DvVIIDTaGrl~---~d~~lm~el~~i~~~~~pd~vlLVv--DA~~-gq~a~~~a~~f~~~~-----~i~gVIlT 247 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHK---EDKALIEEMKQISNVIHPHEVILVI--DGTI-GQQAYNQALAFKEAT-----PIGSIIVT 247 (443)
T ss_dssp HHTTCSEEEEECCCCSS---CCHHHHHHHHHHHHHHCCSEEEEEE--EGGG-GGGHHHHHHHHHHSC-----TTEEEEEE
T ss_pred HhCCCCEEEEECCCccc---chHHHHHHHHHHHHhhcCceEEEEE--eCCC-chhHHHHHHHHHhhC-----CCeEEEEE
Confidence 01357899999999854 2334445555444445789999994 4422 222334444444443 56789999
Q ss_pred CcCCC
Q 022358 161 HAQLC 165 (298)
Q Consensus 161 k~D~~ 165 (298)
|.|..
T Consensus 248 KlD~~ 252 (443)
T 3dm5_A 248 KLDGS 252 (443)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 99984
No 213
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.57 E-value=3.7e-08 Score=91.99 Aligned_cols=117 Identities=18% Similarity=0.135 Sum_probs=66.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC------CcccccCC----------------------CC--cceeEEEE----EEEE
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGE------RVVTVNSF----------------------QS--EALRPVMV----SRSK 82 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~------~~~~~~~~----------------------~~--~t~~~~~~----~~~~ 82 (298)
+..|+++|.+|+||||+++.|.+. .+..++.- +. ++..+... ....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999763 22211110 00 11111000 0012
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCc-e-EEEEEe
Q 022358 83 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWR-K-SLLVLT 160 (298)
Q Consensus 83 ~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~-~-~ivV~t 160 (298)
.+..++|+||||... .+......+........+|.+++|++... .. ......+ .+... . + ..+|+|
T Consensus 179 ~~~D~vIIDT~G~~~---~~~~l~~~l~~i~~~~~~d~vllVvda~~-g~--~~~~~~~----~~~~~--~~~i~gvVln 246 (432)
T 2v3c_C 179 KKADVLIIDTAGRHK---EEKGLLEEMKQIKEITNPDEIILVIDGTI-GQ--QAGIQAK----AFKEA--VGEIGSIIVT 246 (432)
T ss_dssp SSCSEEEEECCCSCS---SHHHHHHHHHHTTSSSCCSEEEEEEEGGG-GG--GHHHHHH----HHHTT--SCSCEEEEEE
T ss_pred hCCCEEEEcCCCCcc---ccHHHHHHHHHHHHHhcCcceeEEeeccc-cH--HHHHHHH----HHhhc--ccCCeEEEEe
Confidence 566899999999854 23345555544433347899999954432 11 1222222 22222 3 4 889999
Q ss_pred CcCCC
Q 022358 161 HAQLC 165 (298)
Q Consensus 161 k~D~~ 165 (298)
|+|..
T Consensus 247 K~D~~ 251 (432)
T 2v3c_C 247 KLDGS 251 (432)
T ss_dssp CSSSC
T ss_pred CCCCc
Confidence 99974
No 214
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.39 E-value=6.6e-07 Score=83.34 Aligned_cols=121 Identities=18% Similarity=0.192 Sum_probs=68.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------CCCcccccCC--CCc----------ceeEEEEE-----------------E
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVI------GERVVTVNSF--QSE----------ALRPVMVS-----------------R 80 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~------g~~~~~~~~~--~~~----------t~~~~~~~-----------------~ 80 (298)
.+..|+++|++|+||||+++.|. |..+..++.- ... ......+. .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35789999999999999999987 4433221100 000 00000000 0
Q ss_pred EECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEe
Q 022358 81 SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT 160 (298)
Q Consensus 81 ~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~t 160 (298)
...+..++++||||..... .+.....++........+|.+++| +|+.. ........+.+.+.. ....+|+|
T Consensus 176 ~~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~~pd~vlLV--lDa~~-gq~a~~~a~~f~~~~-----~~~gVIlT 246 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVLKPDDVILV--IDASI-GQKAYDLASRFHQAS-----PIGSVIIT 246 (433)
T ss_dssp TTTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHHCCSEEEEE--EEGGG-GGGGHHHHHHHHHHC-----SSEEEEEE
T ss_pred HhcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhhCCcceEEE--EeCcc-chHHHHHHHHHhccc-----CCcEEEEe
Confidence 0135689999999974310 222344444443333367888888 44422 223344555565554 56789999
Q ss_pred CcCCC
Q 022358 161 HAQLC 165 (298)
Q Consensus 161 k~D~~ 165 (298)
|.|..
T Consensus 247 KlD~~ 251 (433)
T 3kl4_A 247 KMDGT 251 (433)
T ss_dssp CGGGC
T ss_pred ccccc
Confidence 99974
No 215
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.36 E-value=1e-06 Score=80.35 Aligned_cols=79 Identities=9% Similarity=0.079 Sum_probs=44.6
Q ss_pred EEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCC-C------CHHHHHHHHHHHHHhCCC
Q 022358 78 VSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR-V------DDLDRQIIKAVTGTFGKQ 150 (298)
Q Consensus 78 ~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~-~------~~~~~~~l~~l~~~~~~~ 150 (298)
.....++..+.+|||+|...... ....+ -.++++++||++++... . ...-.+....+.......
T Consensus 194 ~~~~~~~~~l~i~Dt~Gq~~~r~-------~w~~~--f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~ 264 (362)
T 1zcb_A 194 YDFEIKNVPFKMVDVGGQRSERK-------RWFEC--FDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 264 (362)
T ss_dssp EEEEETTEEEEEEEECC--------------CTTS--CTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred EEeeeCCeEEEEEeccchhhhhh-------hHHHH--hCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch
Confidence 34566788999999999843221 11111 26899999998887621 0 111122233333333211
Q ss_pred --CCceEEEEEeCcCCC
Q 022358 151 --IWRKSLLVLTHAQLC 165 (298)
Q Consensus 151 --~~~~~ivV~tk~D~~ 165 (298)
...|+|+|+||+|+.
T Consensus 265 ~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 265 VFSNVSIILFLNKTDLL 281 (362)
T ss_dssp GGTTSEEEEEEECHHHH
T ss_pred hhCCCCEEEEEEChhhh
Confidence 237999999999984
No 216
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.30 E-value=1.2e-06 Score=81.81 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=58.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC---------------CcccccCCCCcceeEEEEEEEE---------C--CeEEEE
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE---------------RVVTVNSFQSEALRPVMVSRSK---------G--GFTLNI 89 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~---------------~~~~~~~~~~~t~~~~~~~~~~---------~--g~~l~v 89 (298)
+-.-|.|+|++++|||||+|.|+|. .....+ ..+++..++.....+ . ...+++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~-~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFS-WRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSC-SCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceec-CCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 4467899999999999999999974 111111 122333333333222 1 257999
Q ss_pred EeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHH
Q 022358 90 IDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTG 145 (298)
Q Consensus 90 iDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~ 145 (298)
+||||+.+... +.+.-..+-. +..--.++++|- +.. .+++.+.+.++.+.+
T Consensus 145 lDTeG~~~~~~-~~~~d~~ifa-l~~lLSs~~IyN--~~~-~i~~~~l~~L~~~~e 195 (447)
T 3q5d_A 145 MDTQGTFDSQS-TLRDSATVFA-LSTMISSIQVYN--LSQ-NVQEDDLQHLQLFTE 195 (447)
T ss_dssp EEEECCCSSHH-HHHHHHHHHH-HHHHHCSEEEEE--ESS-SCCHHHHHHHHHHHH
T ss_pred EcCCccccccc-chhhhHHHHH-HHHHHhhHHHHh--hcc-cccHHHHHHHHHHHH
Confidence 99999987643 1111111111 111123556665 332 577777776665444
No 217
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.27 E-value=2.7e-06 Score=77.34 Aligned_cols=80 Identities=10% Similarity=0.105 Sum_probs=48.3
Q ss_pred EEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCC-------CHHHHHHHHHHHHHhCC
Q 022358 77 MVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV-------DDLDRQIIKAVTGTFGK 149 (298)
Q Consensus 77 ~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~-------~~~~~~~l~~l~~~~~~ 149 (298)
......++..+.+|||+|....... ... .-.++|+++||++++.... ...-.+....+.+....
T Consensus 185 ~~~~~~~~~~l~iwDt~GQe~~r~~-------w~~--yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~ 255 (353)
T 1cip_A 185 ETHFTFKDLHFKMFDVGGQRSERKK-------WIH--CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN 255 (353)
T ss_dssp EEEEEETTEEEEEEEECCSGGGGGG-------GGG--GCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred EEEEeeCCeeEEEEeCCCchhhhHH-------HHH--HHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC
Confidence 3455667889999999997432111 111 2268999999988875211 11122333444443331
Q ss_pred C--CCceEEEEEeCcCCC
Q 022358 150 Q--IWRKSLLVLTHAQLC 165 (298)
Q Consensus 150 ~--~~~~~ivV~tk~D~~ 165 (298)
. ...|+++|+||+|+.
T Consensus 256 ~~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 256 KWFTDTSIILFLNKKDLF 273 (353)
T ss_dssp GGGTTSEEEEEEECHHHH
T ss_pred ccccCCcEEEEEECcCch
Confidence 1 237999999999984
No 218
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.26 E-value=9.3e-06 Score=73.23 Aligned_cols=81 Identities=14% Similarity=0.172 Sum_probs=47.7
Q ss_pred EEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCC-------CCHHHHHHHHHHHHHhC
Q 022358 76 VMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR-------VDDLDRQIIKAVTGTFG 148 (298)
Q Consensus 76 ~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~-------~~~~~~~~l~~l~~~~~ 148 (298)
.......++..+.+|||+|.. ........+. .++++++||++++... -...-.+.+..+.+...
T Consensus 152 ~~~~~~~~~v~l~iwDtaGQe-------~~R~~w~~yy--~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~ 222 (340)
T 4fid_A 152 HEYDFVVKDIPFHLIDVGGQR-------SERKXWVSFF--SDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMT 222 (340)
T ss_dssp EEEEEESSSCEEEEEECCSCH-------HHHHHHHTTS--CSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHH
T ss_pred EEEEEEeeeeeeccccCCCcc-------cccccHHHHh--ccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhh
Confidence 344566678899999999972 2222223333 7899999998886210 01111222333333322
Q ss_pred CC--CCceEEEEEeCcCCC
Q 022358 149 KQ--IWRKSLLVLTHAQLC 165 (298)
Q Consensus 149 ~~--~~~~~ivV~tk~D~~ 165 (298)
.. ...|+++++||+|+.
T Consensus 223 ~~~~~~~piiLv~NK~DL~ 241 (340)
T 4fid_A 223 NEFLKGAVKLIFLNKMDLF 241 (340)
T ss_dssp CGGGTTSEEEEEEECHHHH
T ss_pred hhccCCCeEEEEEECchhh
Confidence 11 137999999999974
No 219
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.14 E-value=8.7e-06 Score=75.95 Aligned_cols=119 Identities=16% Similarity=0.138 Sum_probs=65.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh-------CCCcccccCCCCcc--e----------eEEEEE-----------------
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVI-------GERVVTVNSFQSEA--L----------RPVMVS----------------- 79 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~-------g~~~~~~~~~~~~t--~----------~~~~~~----------------- 79 (298)
.+..|+++|++|+||||++..|. |..+..+..-+... . ....+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 35689999999999999999887 66543322111000 0 000000
Q ss_pred EEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEE
Q 022358 80 RSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL 159 (298)
Q Consensus 80 ~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~ 159 (298)
....+..++||||||.... +......+........+|.+++|++.. .-. ......+.+.... ...-+|+
T Consensus 179 ~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~~~~p~~vllVvda~--~g~-~~~~~~~~f~~~l-----~i~gvVl 247 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVHASINPVETLFVVDAM--TGQ-DAANTAKAFNEAL-----PLTGVVL 247 (433)
T ss_dssp HHHTTCSEEEEECCCCCTT---CHHHHHHHHHHHHHSCCSEEEEEEETT--BCT-THHHHHHHHHHHS-----CCCCEEE
T ss_pred HHhCCCCEEEEECCCcccc---cHHHHHHHHHHHHhhcCcceeEEeecc--hhH-HHHHHHHHHhccC-----CCeEEEE
Confidence 0114668999999997543 223333433322224789999985543 221 2223333333321 2245799
Q ss_pred eCcCCC
Q 022358 160 THAQLC 165 (298)
Q Consensus 160 tk~D~~ 165 (298)
||.|..
T Consensus 248 nK~D~~ 253 (433)
T 2xxa_A 248 TKVDGD 253 (433)
T ss_dssp ECTTSS
T ss_pred ecCCCC
Confidence 999873
No 220
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.12 E-value=7.7e-06 Score=68.85 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
...+|+++|.+|+|||||+|.++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999865
No 221
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.11 E-value=2.7e-05 Score=69.85 Aligned_cols=80 Identities=8% Similarity=0.018 Sum_probs=48.4
Q ss_pred EEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCC--------CCCCCHHHHHHHHHHHHHh
Q 022358 76 VMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLD--------AYRVDDLDRQIIKAVTGTF 147 (298)
Q Consensus 76 ~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d--------~~~~~~~~~~~l~~l~~~~ 147 (298)
.......++..+.+|||.|.. ........ .-.++++++||++++ ..... .-.+.+..+.+..
T Consensus 158 ~~~~~~~~~v~l~iwDtgGQe-------~~R~~w~~--yf~~~~~iIfV~dls~ydq~l~d~~~~n-r~~es~~~~~~i~ 227 (327)
T 3ohm_A 158 IEYPFDLQSVIFRMVDVGGQR-------SERRKWIH--CFENVTSIMFLVALSEYDQVLVESDNEN-RMEESKALFRTII 227 (327)
T ss_dssp EEEEEEETTEEEEEEEECCSH-------HHHTTGGG--GCSSCSEEEEEEEGGGGGCBCSSCTTSB-HHHHHHHHHHHHH
T ss_pred EEEEEEeeceeeEEEEcCCch-------hHHHHHHH--HhCCCCEEEEEEECccccccccccccHh-HHHHHHHHHHHHh
Confidence 345566788999999999972 11111112 226899999998764 21211 1223344444443
Q ss_pred CCC--CCceEEEEEeCcCCC
Q 022358 148 GKQ--IWRKSLLVLTHAQLC 165 (298)
Q Consensus 148 ~~~--~~~~~ivV~tk~D~~ 165 (298)
... ...|+++++||+|+.
T Consensus 228 ~~~~~~~~~iiL~~NK~DL~ 247 (327)
T 3ohm_A 228 TYPWFQNSSVILFLNKKDLL 247 (327)
T ss_dssp TSGGGTTCEEEEEEECHHHH
T ss_pred hhhccCCceEEEEEECchhh
Confidence 321 237999999999984
No 222
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.06 E-value=1.8e-05 Score=70.17 Aligned_cols=120 Identities=18% Similarity=0.164 Sum_probs=64.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh------CCCcccccCCC--Ccce----------eEEEEE-----------------EE
Q 022358 37 TLTILVMGKGGVGKSSTVNSVI------GERVVTVNSFQ--SEAL----------RPVMVS-----------------RS 81 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~------g~~~~~~~~~~--~~t~----------~~~~~~-----------------~~ 81 (298)
.-.|+++|++|+||||+++.|. |.++..++.-. ..+. ....+. ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4578899999999999999887 33332221110 0000 000000 01
Q ss_pred ECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeC
Q 022358 82 KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH 161 (298)
Q Consensus 82 ~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk 161 (298)
..+..++++||||..... .++....+++.......+|.+++|++.. . .....+..+.+.+.. ....+|+||
T Consensus 178 ~~~~D~ViIDTpg~~~~~-~~~~l~~el~~i~~~~~~d~vllVvda~--~-g~~~~~~~~~~~~~~-----~i~gvVlnk 248 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEAIKPDEVTLVIDAS--I-GQKAYDLASKFNQAS-----KIGTIIITK 248 (297)
T ss_dssp HTTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHHHCCSEEEEEEEGG--G-GGGHHHHHHHHHHTC-----TTEEEEEEC
T ss_pred hCCCCEEEEeCCCCcccc-cHHHHHHHHHHHHHHhcCCEEEEEeeCC--c-hHHHHHHHHHHHhhC-----CCCEEEEeC
Confidence 156689999999986411 2223333333222223688899995543 2 122233333333321 337899999
Q ss_pred cCCC
Q 022358 162 AQLC 165 (298)
Q Consensus 162 ~D~~ 165 (298)
+|..
T Consensus 249 ~D~~ 252 (297)
T 1j8m_F 249 MDGT 252 (297)
T ss_dssp GGGC
T ss_pred CCCC
Confidence 9973
No 223
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.97 E-value=2e-05 Score=74.36 Aligned_cols=118 Identities=18% Similarity=0.190 Sum_probs=64.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC------CcccccCCCCcc-----------e-eEEEEEE-----------------E
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGE------RVVTVNSFQSEA-----------L-RPVMVSR-----------------S 81 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~------~~~~~~~~~~~t-----------~-~~~~~~~-----------------~ 81 (298)
.-.|+|+|.+|+|||||++.|.|. .+...+.-.... . ....+.. .
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAK 372 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHH
Confidence 457999999999999999999754 221111100000 0 0000000 0
Q ss_pred ECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhh------hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceE
Q 022358 82 KGGFTLNIIDTPGLVEAGYVNYQALELIKGFL------LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKS 155 (298)
Q Consensus 82 ~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~------~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ 155 (298)
..+..++++||+|..... ......+++.. ....+|-+|+|+ |+. ........++.+.+.. ...
T Consensus 373 ~~~~DvVLIDTaGrl~~~---~~lm~EL~kiv~iar~l~~~~P~evLLvL--Dat-tGq~al~~ak~f~~~~-----~it 441 (503)
T 2yhs_A 373 ARNIDVLIADTAGRLQNK---SHLMEELKKIVRVMKKLDVEAPHEVMLTI--DAS-TGQNAVSQAKLFHEAV-----GLT 441 (503)
T ss_dssp HTTCSEEEECCCCSCCCH---HHHHHHHHHHHHHHHTTCTTCSSEEEEEE--EGG-GTHHHHHHHHHHHHHT-----CCS
T ss_pred hcCCCEEEEeCCCccchh---hhHHHHHHHHHHHHHHhccCCCCeeEEEe--cCc-ccHHHHHHHHHHHhhc-----CCC
Confidence 145678999999985432 22222332221 123478888884 432 2233344555555554 345
Q ss_pred EEEEeCcCCC
Q 022358 156 LLVLTHAQLC 165 (298)
Q Consensus 156 ivV~tk~D~~ 165 (298)
.+|+||.|..
T Consensus 442 gvIlTKLD~t 451 (503)
T 2yhs_A 442 GITLTKLDGT 451 (503)
T ss_dssp EEEEECGGGC
T ss_pred EEEEEcCCCc
Confidence 7899999974
No 224
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.95 E-value=1.6e-05 Score=71.42 Aligned_cols=119 Identities=15% Similarity=0.217 Sum_probs=64.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC------ccccc-CC-CCcc----------eeEEEEEE-----------------
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGER------VVTVN-SF-QSEA----------LRPVMVSR----------------- 80 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~------~~~~~-~~-~~~t----------~~~~~~~~----------------- 80 (298)
++-.++++|++|+||||+++.|.|.- +...+ +. .... .....+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 45789999999999999999998642 11110 00 0000 00000000
Q ss_pred EECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEe
Q 022358 81 SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT 160 (298)
Q Consensus 81 ~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~t 160 (298)
...+..+.++||+|.......--..+..+.+.+ .+|-.+++.+.. . ...-.+.++.+.+.. ...++++|
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral---~~de~llvLDa~--t-~~~~~~~~~~~~~~~-----~it~iilT 276 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVT---KPNLVIFVGDAL--A-GNAIVEQARQFNEAV-----KIDGIILT 276 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHH---CCSEEEEEEEGG--G-TTHHHHHHHHHHHHS-----CCCEEEEE
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHHHh---cCCCCEEEEecH--H-HHHHHHHHHHHHHhc-----CCCEEEEe
Confidence 012345788999998643322222222333322 578888884432 2 223334445554443 45689999
Q ss_pred CcCCC
Q 022358 161 HAQLC 165 (298)
Q Consensus 161 k~D~~ 165 (298)
|.|..
T Consensus 277 KlD~~ 281 (328)
T 3e70_C 277 KLDAD 281 (328)
T ss_dssp CGGGC
T ss_pred CcCCc
Confidence 99973
No 225
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.93 E-value=2.5e-06 Score=75.93 Aligned_cols=58 Identities=26% Similarity=0.342 Sum_probs=33.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCC-------CcceeEEEEEEEECCeEEEEEeCCCCCCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQ-------SEALRPVMVSRSKGGFTLNIIDTPGLVEAG 99 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~-------~~t~~~~~~~~~~~g~~l~viDTPG~~~~~ 99 (298)
-.++++|++|+|||||+|+|.|.....++... ++|.....+. .. .-.++||||+...+
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~--~~--~g~v~dtpg~~~~~ 238 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIH--TS--GGLVADTPGFSSLE 238 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEE--ET--TEEEESSCSCSSCC
T ss_pred CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhh--cC--CEEEecCCCccccc
Confidence 48999999999999999999997543433322 2222221111 11 23799999997543
No 226
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.89 E-value=1.5e-05 Score=70.88 Aligned_cols=57 Identities=21% Similarity=0.338 Sum_probs=35.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC-------cceeEEEEEEEECCeEEEEEeCCCCCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS-------EALRPVMVSRSKGGFTLNIIDTPGLVEA 98 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~-------~t~~~~~~~~~~~g~~l~viDTPG~~~~ 98 (298)
-.++++|++|+|||||+|+|. ......+.... +|...... ...+ --.++||||+...
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~--~~~~-~g~v~d~pg~~~~ 229 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLI--PFGK-GSFVGDTPGFSKV 229 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEE--EETT-TEEEESSCCCSSC
T ss_pred cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEE--EcCC-CcEEEECcCcCcC
Confidence 478999999999999999999 64433333221 22222211 1111 2368999998643
No 227
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.88 E-value=8.2e-05 Score=66.10 Aligned_cols=119 Identities=19% Similarity=0.252 Sum_probs=63.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC------CcccccC--CCCc----------ceeEEEEEE-----------------
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE------RVVTVNS--FQSE----------ALRPVMVSR----------------- 80 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~------~~~~~~~--~~~~----------t~~~~~~~~----------------- 80 (298)
+.-.|+++|++||||||+++.|.|. .+...+. +... ......+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999999743 1111110 0000 000000000
Q ss_pred EECCeEEEEEeCCCCCCCCcCcHHHHHHH---Hhhh---hcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCce
Q 022358 81 SKGGFTLNIIDTPGLVEAGYVNYQALELI---KGFL---LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK 154 (298)
Q Consensus 81 ~~~g~~l~viDTPG~~~~~~~~~~~~~~i---~~~~---~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~ 154 (298)
...+..+.++||+|..... ......+ +..+ ....|+.++++ +|+.. .....+.++.+.+.. ..
T Consensus 181 ~~~~~d~~llDt~G~~~~~---~~~~~eLs~~r~~iaRal~~~P~~~lLv--LDa~t-~~~~~~~~~~~~~~~-----~~ 249 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTK---HNLMEELKKVKRAIAKADPEEPKEVWLV--LDAVT-GQNGLEQAKKFHEAV-----GL 249 (304)
T ss_dssp HHHTCSEEEECCCCCCTTC---HHHHHHHHHHHHHHHHHCTTCCSEEEEE--EETTB-CTHHHHHHHHHHHHH-----CC
T ss_pred HhCCCCEEEecCCCCCCch---HHHHHHHHHHHHHHHHhhcCCCCeEEEE--EcHHH-HHHHHHHHHHHHHHc-----CC
Confidence 0123457899999985432 2222222 2211 12568888888 44422 233444555555544 35
Q ss_pred EEEEEeCcCCC
Q 022358 155 SLLVLTHAQLC 165 (298)
Q Consensus 155 ~ivV~tk~D~~ 165 (298)
.++++||.|..
T Consensus 250 t~iivTh~d~~ 260 (304)
T 1rj9_A 250 TGVIVTKLDGT 260 (304)
T ss_dssp SEEEEECTTSS
T ss_pred cEEEEECCccc
Confidence 78999999874
No 228
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.79 E-value=1.9e-05 Score=69.91 Aligned_cols=119 Identities=13% Similarity=0.170 Sum_probs=62.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC-------CcccccC--CCCcce----------eEEEEE-----------EEECCe
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE-------RVVTVNS--FQSEAL----------RPVMVS-----------RSKGGF 85 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~-------~~~~~~~--~~~~t~----------~~~~~~-----------~~~~g~ 85 (298)
+.-.|+++|++|+||||+++.|.+. .+..+.. +..... ...... ....+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 3458999999999999999988632 2211110 000000 000000 011455
Q ss_pred EEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCCC
Q 022358 86 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (298)
Q Consensus 86 ~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~~ 165 (298)
.++|+||||.... .......+.+.+....+|.+++|++.. . .. ..+..+.+.+.. ....-+|+||.|..
T Consensus 184 dlvIiDT~G~~~~---~~~~~~el~~~l~~~~~~~~~lVl~at--~-~~---~~~~~~~~~~~~--l~~~giVltk~D~~ 252 (296)
T 2px0_A 184 DHVFVDTAGRNFK---DPQYIDELKETIPFESSIQSFLVLSAT--A-KY---EDMKHIVKRFSS--VPVNQYIFTKIDET 252 (296)
T ss_dssp SEEEEECCCCCTT---SHHHHHHHHHHSCCCTTEEEEEEEETT--B-CH---HHHHHHTTTTSS--SCCCEEEEECTTTC
T ss_pred CEEEEeCCCCChh---hHHHHHHHHHHHhhcCCCeEEEEEECC--C-CH---HHHHHHHHHHhc--CCCCEEEEeCCCcc
Confidence 7999999998532 223334444433323467778884333 2 21 223333344431 23456788999874
No 229
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.64 E-value=3.8e-05 Score=68.13 Aligned_cols=59 Identities=24% Similarity=0.330 Sum_probs=35.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC-------cceeEEEEEEEECCeEEEEEeCCCCCCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS-------EALRPVMVSRSKGGFTLNIIDTPGLVEAG 99 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~-------~t~~~~~~~~~~~g~~l~viDTPG~~~~~ 99 (298)
-.++++|++|+|||||+|.|.|......+.... .|....... .. ..-.++||||+...+
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~--~~-~~g~v~q~p~~~~~~ 235 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLK--FD-FGGYVVDTPGFANLE 235 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEE--CT-TSCEEESSCSSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEE--cC-CCCEEEECcCCCccC
Confidence 478999999999999999999976433333221 121111111 11 123689999986544
No 230
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.63 E-value=2.5e-05 Score=70.96 Aligned_cols=58 Identities=26% Similarity=0.405 Sum_probs=35.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCc-ccccCCCC-------cceeEEEEEEEECCeEEEEEeCCCCCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERV-VTVNSFQS-------EALRPVMVSRSKGGFTLNIIDTPGLVEA 98 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~-~~~~~~~~-------~t~~~~~~~~~~~g~~l~viDTPG~~~~ 98 (298)
-.++++|++|+|||||+|.|+|... ..++.... +|.....+... . ...++||||+.+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~-q--~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFP-H--GGDVIDSPGVREF 281 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECT-T--SCEEEECHHHHTC
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEEC-C--CCEecCcccHHHh
Confidence 4789999999999999999999765 44333221 11111111111 1 2357999998653
No 231
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.56 E-value=4.5e-05 Score=70.83 Aligned_cols=72 Identities=15% Similarity=0.032 Sum_probs=40.3
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCc
Q 022358 83 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (298)
Q Consensus 83 ~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~ 162 (298)
.+..++|+||||.... +......+......-.+|.+++|++.. .. ..-....+.+.+.. ...-+|+||.
T Consensus 179 ~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~~pd~vlLVvDa~--tg-q~av~~a~~f~~~l-----~i~GVIlTKl 247 (425)
T 2ffh_A 179 EARDLILVDTAGRLQI---DEPLMGELARLKEVLGPDEVLLVLDAM--TG-QEALSVARAFDEKV-----GVTGLVLTKL 247 (425)
T ss_dssp TTCSEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGG--GT-THHHHHHHHHHHHT-----CCCEEEEESG
T ss_pred CCCCEEEEcCCCcccc---cHHHHHHHHHhhhccCCceEEEEEecc--ch-HHHHHHHHHHHhcC-----CceEEEEeCc
Confidence 4567999999997543 233333333222223688888885443 22 22223333333332 3467899999
Q ss_pred CCC
Q 022358 163 QLC 165 (298)
Q Consensus 163 D~~ 165 (298)
|..
T Consensus 248 D~~ 250 (425)
T 2ffh_A 248 DGD 250 (425)
T ss_dssp GGC
T ss_pred CCc
Confidence 863
No 232
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.56 E-value=2.3e-05 Score=69.81 Aligned_cols=23 Identities=26% Similarity=0.588 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g 59 (298)
+-.|+++|++|+||||++..|.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34789999999999999988864
No 233
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.50 E-value=0.00059 Score=63.54 Aligned_cols=101 Identities=18% Similarity=0.193 Sum_probs=55.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHh-------C----------CCccccc-CCCCcceeEEEEE----EEE-CC--eEEEEEeC
Q 022358 38 LTILVMGKGGVGKSSTVNSVI-------G----------ERVVTVN-SFQSEALRPVMVS----RSK-GG--FTLNIIDT 92 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~-------g----------~~~~~~~-~~~~~t~~~~~~~----~~~-~g--~~l~viDT 92 (298)
..|.|+|..++|||+|+|.|+ | ...+.++ ...++|...-... ... .| ..+.++||
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT 147 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence 566799999999999999775 2 1222332 2334455433321 111 33 46999999
Q ss_pred CCCCCCCcCcHH--HHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHH
Q 022358 93 PGLVEAGYVNYQ--ALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTG 145 (298)
Q Consensus 93 PG~~~~~~~~~~--~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~ 145 (298)
.|+++.....+. .+-.+.-. -.++++|= ... .+++.+.+.+..+.+
T Consensus 148 EG~~d~~~~~~~d~~ifaLa~L----LSS~~IyN--~~~-~i~~~~L~~L~~~te 195 (457)
T 4ido_A 148 QGTFDSQSTLRDSATVFALSTM----ISSIQVYN--LSQ-NVQEDDLQHLQLFTE 195 (457)
T ss_dssp CCBTCTTCCHHHHHHHHHHHHH----HCSEEEEE--EES-SCCHHHHHHHHHHHH
T ss_pred cCCCCcccCccccHHHHHHHHH----Hhhheeec--ccc-cCCHHHHHHHHHHHH
Confidence 999887653211 11111111 23556665 332 466666665554443
No 234
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.48 E-value=0.00022 Score=63.76 Aligned_cols=23 Identities=17% Similarity=0.455 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g 59 (298)
.-.|+++|.+|+||||++..|.+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44789999999999999988864
No 235
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.32 E-value=0.0009 Score=60.71 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.-.|+++|++||||||+++.|.|.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhh
Confidence 347999999999999999999764
No 236
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.27 E-value=0.00044 Score=61.29 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.-.++++|++|+||||+++.|.|.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 347899999999999999999764
No 237
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.25 E-value=0.00016 Score=63.94 Aligned_cols=72 Identities=15% Similarity=0.048 Sum_probs=39.3
Q ss_pred CCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCc
Q 022358 83 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (298)
Q Consensus 83 ~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~ 162 (298)
.+..++++||||.... +......+........+|.+++|++.. . .....+..+.+.+.. ...-+|+||.
T Consensus 179 ~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~~~~~~~lv~~~~--~-~~~~~~~~~~~~~~~-----~i~givlnk~ 247 (295)
T 1ls1_A 179 EARDLILVDTAGRLQI---DEPLMGELARLKEVLGPDEVLLVLDAM--T-GQEALSVARAFDEKV-----GVTGLVLTKL 247 (295)
T ss_dssp HTCCEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGG--G-THHHHHHHHHHHHHT-----CCCEEEEECG
T ss_pred CCCCEEEEeCCCCccc---cHHHHHHHHHHhhhcCCCEEEEEEeCC--C-cHHHHHHHHHHhhcC-----CCCEEEEECC
Confidence 3557999999987533 333333333322223578888885543 2 222222333333222 3456899999
Q ss_pred CCC
Q 022358 163 QLC 165 (298)
Q Consensus 163 D~~ 165 (298)
|..
T Consensus 248 d~~ 250 (295)
T 1ls1_A 248 DGD 250 (295)
T ss_dssp GGC
T ss_pred CCC
Confidence 873
No 238
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.17 E-value=2.6e-05 Score=64.85 Aligned_cols=26 Identities=27% Similarity=0.603 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
..-.|+|+|++|+|||||+|.|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34578999999999999999999753
No 239
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.02 E-value=0.00038 Score=57.94 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=27.8
Q ss_pred HHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 25 ELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 25 ~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
++...+.+.......|+|+|++|+|||||++.|.|.-
T Consensus 10 ~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 10 GVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3344444333456799999999999999999998763
No 240
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.93 E-value=0.00037 Score=56.80 Aligned_cols=24 Identities=29% Similarity=0.664 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.+++++|++|+|||||++.|.|.-
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998764
No 241
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.90 E-value=0.002 Score=52.91 Aligned_cols=68 Identities=10% Similarity=0.089 Sum_probs=41.6
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcC
Q 022358 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (298)
Q Consensus 84 g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D 163 (298)
...++|+|||+... ......+ ..+|.++++...+. .+..-..+++.+.+....+...++.+|+|+.|
T Consensus 75 ~yD~viiD~~~~~~-----~~~~~~l------~~ad~viiv~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~ 141 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS-----VITSAAV------MVSDLVIIPVTPSP--LDFSAAGSVVTVLEAQAYSRKVEARFLITRKI 141 (206)
T ss_dssp TSSEEEEECCSSSS-----HHHHHHH------HHCSEEEEEECSCT--TTHHHHHHHHHHHTTSCGGGCCEEEEEECSBC
T ss_pred CCCEEEEECCCCCC-----HHHHHHH------HHCCEEEEEecCCH--HHHHHHHHHHHHHHHHHhCCCCcEEEEEeccC
Confidence 45789999998741 2222223 25789999966654 33333455666655432222356799999998
Q ss_pred C
Q 022358 164 L 164 (298)
Q Consensus 164 ~ 164 (298)
.
T Consensus 142 ~ 142 (206)
T 4dzz_A 142 E 142 (206)
T ss_dssp T
T ss_pred C
Confidence 4
No 242
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.89 E-value=0.00039 Score=56.54 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~ 60 (298)
-.++|+|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999875
No 243
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.88 E-value=0.00039 Score=57.53 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~ 60 (298)
-.++|+|++|+|||||++.|+|.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999874
No 244
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.82 E-value=0.0014 Score=60.22 Aligned_cols=80 Identities=9% Similarity=0.117 Sum_probs=48.1
Q ss_pred EEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCC-C------CHHHHHHHHHHHHHhCC
Q 022358 77 MVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR-V------DDLDRQIIKAVTGTFGK 149 (298)
Q Consensus 77 ~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~-~------~~~~~~~l~~l~~~~~~ 149 (298)
.....+++..+.+|||+|....... ...+ -.++++++||++++... . ...-.+...++.+....
T Consensus 209 ~~~~~~~~v~l~iwDtaGQe~~r~~-------w~~y--f~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 209 ETKFQVDKVNFHMFDVGGQRDERRK-------WIQC--FNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp EEEEEETTEEEEEEEECCSGGGGGG-------GGGG--TTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred EEEeecCCccceecccchhhhhhhh-------hHhh--ccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 3455677899999999998432211 1111 26899999998887521 0 11112233334433321
Q ss_pred --CCCceEEEEEeCcCCC
Q 022358 150 --QIWRKSLLVLTHAQLC 165 (298)
Q Consensus 150 --~~~~~~ivV~tk~D~~ 165 (298)
....|+++|+||+|+.
T Consensus 280 ~~~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 280 RWLRTISVILFLNKQDLL 297 (402)
T ss_dssp TTCSSCCEEEEEECHHHH
T ss_pred ccCCCCeEEEEEEChhhh
Confidence 1237999999999973
No 245
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.72 E-value=0.0006 Score=56.66 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
-.++|+|++|||||||++.|.|..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468899999999999999999864
No 246
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.67 E-value=0.00068 Score=55.33 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.++|+|++||||||+++.|.+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999999754
No 247
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.62 E-value=0.00099 Score=56.77 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|||||||++.|.|..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 368999999999999999999875
No 248
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.62 E-value=0.00079 Score=56.77 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.--++|+|++|||||||++.|+|..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3578899999999999999999864
No 249
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.62 E-value=0.0008 Score=55.34 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~ 60 (298)
-.|+|+|++||||||+++.|.|.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 46899999999999999999875
No 250
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.61 E-value=0.00079 Score=56.57 Aligned_cols=24 Identities=25% Similarity=0.599 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
-.++|+|++|+|||||++.|.|..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999999853
No 251
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.58 E-value=0.0058 Score=48.05 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
..-.++++|++|+|||+|++++.+.-
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999999754
No 252
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.57 E-value=0.023 Score=51.10 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~ 60 (298)
.++|.|++|+||||+++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999854
No 253
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.55 E-value=0.0012 Score=55.88 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.++++|++|+|||||++.|.|..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999975
No 254
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.53 E-value=0.0017 Score=52.78 Aligned_cols=24 Identities=25% Similarity=0.381 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.-.|+|+|++||||||+++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 356999999999999999999986
No 255
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.49 E-value=0.0014 Score=52.77 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~ 60 (298)
--++++|++|||||||++.+++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~~ 32 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFKP 32 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCG
T ss_pred EEEEEECCCCCCHHHHHHHHccC
Confidence 45789999999999999987643
No 256
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.48 E-value=0.0015 Score=55.73 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999975
No 257
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.47 E-value=0.00092 Score=54.92 Aligned_cols=21 Identities=33% Similarity=0.672 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 022358 40 ILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 40 IllvG~~g~GKSSliN~l~g~ 60 (298)
|+|+|++|+|||||++.|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999855
No 258
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.46 E-value=0.0014 Score=57.18 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|||||||++.|.|..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999999975
No 259
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.45 E-value=0.0013 Score=57.06 Aligned_cols=24 Identities=46% Similarity=0.542 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.-.++|+|++|+|||||++.|.|.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh
Confidence 347999999999999999999875
No 260
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.45 E-value=0.0015 Score=54.79 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.++++|++|+|||||++.|.|..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999974
No 261
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.44 E-value=0.034 Score=47.12 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g 59 (298)
.+..|++.|++|+|||+++.++..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999875
No 262
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.44 E-value=0.0015 Score=55.77 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999999974
No 263
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.44 E-value=0.0017 Score=55.60 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999874
No 264
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.43 E-value=0.0015 Score=56.54 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999999974
No 265
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.43 E-value=0.0015 Score=56.35 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.++++|++|+|||||++.|.|..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999975
No 266
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.43 E-value=0.0017 Score=55.77 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.++++|++|+|||||++.|.|..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999974
No 267
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.43 E-value=0.0017 Score=56.46 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 367899999999999999999975
No 268
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.41 E-value=0.0018 Score=54.91 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.++++|++|+|||||++.|.|..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999975
No 269
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.36 E-value=0.0016 Score=53.87 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
....|+|+|++|||||||++.|.|.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999875
No 270
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.34 E-value=0.002 Score=55.76 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
-.++++|++|+|||||++.|.|..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 368999999999999999999974
No 271
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.34 E-value=0.002 Score=55.34 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~ 60 (298)
.++++|++|+|||||++.|.|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999996
No 272
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.34 E-value=0.0046 Score=52.70 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHh
Q 022358 21 NKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 21 ~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~ 58 (298)
..+.++...+......+++|+|.|.+||||||+.+.|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHH
Confidence 33445555554444578999999999999999999885
No 273
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.34 E-value=0.002 Score=55.32 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERV 62 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~ 62 (298)
.++++|++|+|||||++.|.|...
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 588999999999999999999753
No 274
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.33 E-value=0.0021 Score=55.79 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 367899999999999999999974
No 275
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.33 E-value=0.0016 Score=52.04 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.-.++++|+.|+|||||++.|.|.-
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3478999999999999999999865
No 276
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.33 E-value=0.002 Score=54.94 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.++++|++|+|||||++.|.|..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999974
No 277
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.33 E-value=0.002 Score=53.50 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
...-|+|+|++|+||||+++.|.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34578999999999999999998764
No 278
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.32 E-value=0.0021 Score=55.79 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~ 60 (298)
.++++|++|+|||||++.|.|.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999996
No 279
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.32 E-value=0.0021 Score=55.46 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|..
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999999975
No 280
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.30 E-value=0.0021 Score=55.91 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.++|+|++|+|||||++.|.|..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999974
No 281
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.30 E-value=0.034 Score=47.97 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.+..+++.|++|+|||++++++.+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4567999999999999999999653
No 282
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.29 E-value=0.0036 Score=55.03 Aligned_cols=28 Identities=32% Similarity=0.335 Sum_probs=23.9
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 33 ENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 33 ~~~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
....+..|+|+|++|+|||||++.|.+.
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456789999999999999999988764
No 283
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.29 E-value=0.0042 Score=55.00 Aligned_cols=34 Identities=24% Similarity=0.174 Sum_probs=25.2
Q ss_pred HHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 27 LSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 27 l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
++.+.-.-...-.++|+|++|+|||||++.|.|.
T Consensus 116 L~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 116 LKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred hccceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 4434333334457999999999999999999864
No 284
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.28 E-value=0.0022 Score=52.63 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
...|+|+|++||||||+++.|.+.-
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999998754
No 285
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.28 E-value=0.0023 Score=56.01 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.++++|++|+|||||++.|.|..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68899999999999999999974
No 286
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.28 E-value=0.0025 Score=57.77 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~ 60 (298)
.++|+|++|+|||||+++|+|.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 8999999999999999999875
No 287
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.27 E-value=0.0047 Score=48.13 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=27.1
Q ss_pred HHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 24 IELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 24 ~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.++...+.........|++.|++|+|||++..+|...
T Consensus 11 ~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 11 NQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp HHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3334444433446678999999999999999998754
No 288
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.27 E-value=0.0047 Score=50.92 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=26.8
Q ss_pred HHHHHHHhhhc-CCCccEEEEEcCCCCCHHHHHHHHhC
Q 022358 23 LIELLSKLKQE-NVNTLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 23 l~~~l~~l~~~-~~~~l~IllvG~~g~GKSSliN~l~g 59 (298)
+.++...+... ......|+++|++|+||||+++.|.+
T Consensus 7 ~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33444444432 23457899999999999999999875
No 289
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.26 E-value=0.0024 Score=55.05 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.++++|++|+|||||++.|.|..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999975
No 290
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.25 E-value=0.0053 Score=55.52 Aligned_cols=72 Identities=8% Similarity=0.054 Sum_probs=41.3
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCC--------CCCCHHHHHHHHHHHHHhCC--CCCc
Q 022358 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDA--------YRVDDLDRQIIKAVTGTFGK--QIWR 153 (298)
Q Consensus 84 g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~--------~~~~~~~~~~l~~l~~~~~~--~~~~ 153 (298)
...+.+|||+|.......-. . .-.++|++++|++++. .... .-.+....+.+.... ....
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~-------~--y~~~~~~iI~v~dis~ydq~l~e~~~~~-s~~~~~~~~~~i~~~~~~~~~ 251 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWI-------H--LFEGVTAVIFCAAISEYDQTLFEDEQKN-RMMETKELFDWVLKQPCFEKT 251 (354)
T ss_dssp --EEEEEEECCSTTGGGGTG-------G--GCTTEEEEEEEEEGGGTTCBCSSCTTSB-HHHHHHHHHHHHHTCGGGSSC
T ss_pred ceeeEEEECCCchhhhHHHH-------H--HhCCCCEEEEEEECcccccccccccchh-HHHHHHHHHHHHHhccccCCC
Confidence 46899999999854322111 1 1268999999988861 1111 112233333333321 1237
Q ss_pred eEEEEEeCcCCC
Q 022358 154 KSLLVLTHAQLC 165 (298)
Q Consensus 154 ~~ivV~tk~D~~ 165 (298)
|+++|+||+|+.
T Consensus 252 piiLvgNK~DL~ 263 (354)
T 2xtz_A 252 SFMLFLNKFDIF 263 (354)
T ss_dssp EEEEEEECHHHH
T ss_pred eEEEEEECcchh
Confidence 999999999984
No 291
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.25 E-value=0.0024 Score=55.41 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|..
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 368899999999999999999974
No 292
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.24 E-value=0.0052 Score=54.82 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=23.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
...++-|.++|++|||||||++.|.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345788999999999999999888654
No 293
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.22 E-value=0.02 Score=46.75 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~ 60 (298)
.+++.|++|+|||+++..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988753
No 294
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.22 E-value=0.0017 Score=57.67 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
-.++|+|++|+|||||++.|+|.-
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 378999999999999999999864
No 295
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.16 E-value=0.0033 Score=53.52 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh---CCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVI---GER 61 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~---g~~ 61 (298)
.+..|+|+|++||||||+++.|. |..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 35689999999999999999999 764
No 296
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.15 E-value=0.0024 Score=57.93 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.-.++|+|++|+|||||+|.|++.-
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3479999999999999999999874
No 297
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.13 E-value=0.003 Score=54.71 Aligned_cols=23 Identities=22% Similarity=0.602 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.++++|++|+|||||++.|.|..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999975
No 298
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.12 E-value=0.0029 Score=52.22 Aligned_cols=25 Identities=32% Similarity=0.608 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
....|+|+|++||||||+++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467899999999999999999753
No 299
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.11 E-value=0.0022 Score=52.73 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.++++|++|+|||||++.|.|.-
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58899999999999999998764
No 300
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.10 E-value=0.0018 Score=54.17 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~ 60 (298)
.++++|++|+|||||++.|.|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999987
No 301
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.10 E-value=0.0024 Score=51.92 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 022358 39 TILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g 59 (298)
.++++|++|+||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
No 302
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.06 E-value=0.0058 Score=53.53 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHhhhc---CCCccEEEEEcCCCCCHHHHHHHHhC
Q 022358 19 TQNKLIELLSKLKQE---NVNTLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 19 ~~~~l~~~l~~l~~~---~~~~l~IllvG~~g~GKSSliN~l~g 59 (298)
.+..+.+++..+-.. ...+..|+++|++||||||+.+.|..
T Consensus 12 ~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 12 FENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 333444455544322 23467899999999999999999964
No 303
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.06 E-value=0.0027 Score=60.37 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
..++|+|++|||||||+|+|+|.-
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 459999999999999999999864
No 304
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.06 E-value=0.0026 Score=57.03 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
-.++++|++|+|||||+|.|.|.-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999874
No 305
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.04 E-value=0.002 Score=54.36 Aligned_cols=24 Identities=17% Similarity=0.524 Sum_probs=15.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHh-CCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVI-GER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~-g~~ 61 (298)
-.++|+|++||||||+++.|. +..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 468999999999999999999 763
No 306
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.04 E-value=0.017 Score=52.28 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=18.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~ 58 (298)
.+ .+|+|++|+||||++++|+
T Consensus 24 g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EE-EEEECCTTSSHHHHHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHH
Confidence 35 5589999999999999987
No 307
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.04 E-value=0.0035 Score=50.20 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g 59 (298)
....|+++|.+|+||||+.+.|.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 308
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.02 E-value=0.0034 Score=55.18 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.++++|++|+|||||++.|.|..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68899999999999999999975
No 309
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.99 E-value=0.0015 Score=52.85 Aligned_cols=23 Identities=13% Similarity=0.342 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.+.|+|++|+|||||++.|.+.-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999763
No 310
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.98 E-value=0.004 Score=49.25 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCCHHHHHHHH
Q 022358 38 LTILVMGKGGVGKSSTVNSV 57 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l 57 (298)
+.|++.|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 311
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.97 E-value=0.0062 Score=49.03 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.-.++++|++|+|||||++++.+.-
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998753
No 312
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.96 E-value=0.0037 Score=51.46 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
....|+|+|++|+||||+++.|.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999998753
No 313
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.95 E-value=0.0052 Score=50.50 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
....|+++|++|+||||+.+.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5578999999999999999998764
No 314
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.95 E-value=0.0094 Score=47.55 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 21 NKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 21 ~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
+.+.++...+.. ...-.+++.|++|+|||++++.+...
T Consensus 29 ~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 29 EEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 345555555544 23467899999999999999988754
No 315
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.95 E-value=0.0032 Score=50.23 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~ 60 (298)
..|+|+|.+||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998764
No 316
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.93 E-value=0.0037 Score=55.51 Aligned_cols=27 Identities=30% Similarity=0.223 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.....|+|+|++|||||||++.|.|.-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 456789999999999999999998753
No 317
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.92 E-value=0.0031 Score=57.43 Aligned_cols=24 Identities=46% Similarity=0.542 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.-.++|+|++|+||||+++.|++.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999999975
No 318
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.92 E-value=0.0046 Score=49.43 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g 59 (298)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5689999999999999999875
No 319
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.92 E-value=0.0029 Score=58.55 Aligned_cols=23 Identities=43% Similarity=0.521 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~ 60 (298)
=.++|+|++|+|||||+++|+|.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999975
No 320
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.90 E-value=0.004 Score=56.48 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERV 62 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~ 62 (298)
.+.++|++|||||||++.|.|-..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHhcCCC
Confidence 578999999999999999999753
No 321
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.85 E-value=0.0041 Score=56.30 Aligned_cols=24 Identities=21% Similarity=0.546 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERV 62 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~ 62 (298)
.++++|++|||||||++.|.|-..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 578999999999999999999753
No 322
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.84 E-value=0.0037 Score=50.66 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~ 60 (298)
..++++|++|+|||||++.|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999975
No 323
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.84 E-value=0.0058 Score=48.88 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g 59 (298)
+..|++.|.+||||||+.+.|..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999864
No 324
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.81 E-value=0.0044 Score=51.74 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g 59 (298)
...|+++|++||||||+.+.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998865
No 325
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.80 E-value=0.0054 Score=49.51 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g 59 (298)
...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999854
No 326
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.78 E-value=0.0047 Score=55.86 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERV 62 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~ 62 (298)
.++++|++|+|||||++.|.|-..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 578999999999999999999753
No 327
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.76 E-value=0.0049 Score=56.25 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERV 62 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~ 62 (298)
.++++|++|+|||||++.|.|-..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Confidence 578999999999999999999753
No 328
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.76 E-value=0.0038 Score=52.00 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~ 60 (298)
-.++|+|++|+|||||++.|.|.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999874
No 329
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.049 Score=50.53 Aligned_cols=70 Identities=17% Similarity=0.334 Sum_probs=42.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEeCCCCCCCCcCcHHHHHHHHhhh--
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL-- 113 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~viDTPG~~~~~~~~~~~~~~i~~~~-- 113 (298)
.+--|++.|++|+|||+++.++.++-. .++..++.+.+...- .. +....++...
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~----------------------~~~~~v~~s~l~sk~-~G-ese~~ir~~F~~ 269 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIG----------------------ANFIFSPASGIVDKY-IG-ESARIIREMFAY 269 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT----------------------CEEEEEEGGGTCCSS-SS-HHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC----------------------CCEEEEehhhhcccc-ch-HHHHHHHHHHHH
Confidence 356899999999999999999876421 134455566654321 11 1122222221
Q ss_pred hcCCCCEEEEEEeCCC
Q 022358 114 LNKTIDVLLYADRLDA 129 (298)
Q Consensus 114 ~~~~~d~vl~v~~~d~ 129 (298)
.....-+|||+..+|.
T Consensus 270 A~~~~P~IifiDEiDa 285 (437)
T 4b4t_L 270 AKEHEPCIIFMDEVDA 285 (437)
T ss_dssp HHHSCSEEEEEECCCS
T ss_pred HHhcCCceeeeecccc
Confidence 1135568999988875
No 330
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.76 E-value=0.005 Score=52.40 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
....|.|+|++||||||+++.|.|.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998763
No 331
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.75 E-value=0.0055 Score=48.54 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 022358 39 TILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g 59 (298)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
No 332
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.74 E-value=0.15 Score=45.18 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
+-.|++.|++|+|||+++.++.+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 467999999999999999998754
No 333
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.72 E-value=0.0053 Score=55.70 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 357899999999999999999975
No 334
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.71 E-value=0.029 Score=49.15 Aligned_cols=69 Identities=20% Similarity=0.098 Sum_probs=36.9
Q ss_pred CeEEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceE-EEEEeCc
Q 022358 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKS-LLVLTHA 162 (298)
Q Consensus 84 g~~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~-ivV~tk~ 162 (298)
...++|+|||+......... . + ..+|.+++|...+...+ ..-..+++.+.+. +.+...++ -+|+|++
T Consensus 156 ~yD~ViiD~p~~~~~~~~~~----~----l--~~aD~viiv~~~~~~s~-~~~~~~~~~l~~~-~~~~~~~~~gvV~N~~ 223 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGGFAA----P----L--QHADQAVVVTANDFDSI-YAMNRIIAAVQAK-SKNYKVRLAGCVANRS 223 (307)
T ss_dssp SCSEEEEEECCSSCCGGGGG----G----G--GTCSEEEEEECSSHHHH-HHHHHHHHHHHTT-TTTCCCEEEEEEEESC
T ss_pred cCCEEEEeCCCccchHHHHH----H----H--HHCCEEEEEecCcHHHH-HHHHHHHHHHHHh-hhcCCCceEEEEEecC
Confidence 35789999988643221110 1 1 47899999955443111 1123345555543 22222443 4999998
Q ss_pred CC
Q 022358 163 QL 164 (298)
Q Consensus 163 D~ 164 (298)
+.
T Consensus 224 ~~ 225 (307)
T 3end_A 224 RA 225 (307)
T ss_dssp SC
T ss_pred Cc
Confidence 73
No 335
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.71 E-value=0.0052 Score=55.66 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.++++|++|+|||||++.|.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 57899999999999999999975
No 336
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.71 E-value=0.0073 Score=49.78 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=23.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
-.....|+++|.+|+||||+.+.|.+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 334578999999999999999999886
No 337
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.68 E-value=0.13 Score=44.45 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.+..+++.|++|+|||++++++.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4568999999999999999999764
No 338
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.67 E-value=0.0069 Score=49.43 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.++..|+|+|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45789999999999999999998754
No 339
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.66 E-value=0.01 Score=50.79 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=22.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g 59 (298)
...+..|+++|.+||||||+.+.|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34467899999999999999999864
No 340
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.65 E-value=0.0062 Score=47.33 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
....|++.|++|+|||++..+|...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHh
Confidence 5567999999999999999988754
No 341
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.65 E-value=0.0057 Score=55.72 Aligned_cols=24 Identities=25% Similarity=0.574 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERV 62 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~ 62 (298)
.++++|++|+|||||++.|.|-..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 578999999999999999999753
No 342
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.65 E-value=0.0067 Score=49.03 Aligned_cols=23 Identities=26% Similarity=0.641 Sum_probs=20.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~ 58 (298)
.+..|++.|.+||||||+.+.|.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999998875
No 343
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.64 E-value=0.0042 Score=56.30 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.-+++|+|++|+|||||++.|.|.-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998863
No 344
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.62 E-value=0.0065 Score=50.35 Aligned_cols=21 Identities=33% Similarity=0.711 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 022358 38 LTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~ 58 (298)
++|+|.|.+||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999884
No 345
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.62 E-value=0.006 Score=55.53 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|-.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 357899999999999999999974
No 346
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.62 E-value=0.0054 Score=50.37 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g 59 (298)
.+|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999976
No 347
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.61 E-value=0.0061 Score=51.42 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 022358 38 LTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~ 58 (298)
=.++++|++|+|||||++.|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 467889999999999999888
No 348
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.60 E-value=0.0075 Score=48.78 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~ 58 (298)
.+..|++.|.+||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999885
No 349
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.59 E-value=0.014 Score=53.19 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=27.3
Q ss_pred HHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 24 IELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 24 ~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
...++.+.-.-...-.++++|++|+|||||++.|.+.
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3444444433344568999999999999999999863
No 350
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.59 E-value=0.0073 Score=49.69 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g 59 (298)
..|+++|.+||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 351
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.54 E-value=0.0075 Score=48.59 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~ 58 (298)
...|+++|.+||||||+.+.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999886
No 352
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.52 E-value=0.0066 Score=49.84 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g 59 (298)
...|+|+|.+||||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 353
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.52 E-value=0.0087 Score=48.47 Aligned_cols=25 Identities=32% Similarity=0.589 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
...+|+|+|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999988543
No 354
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.50 E-value=0.0076 Score=49.97 Aligned_cols=21 Identities=24% Similarity=0.618 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 022358 38 LTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~ 58 (298)
++|+|+|.+||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999885
No 355
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.49 E-value=0.0095 Score=48.81 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=21.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHh
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~ 58 (298)
...++.|+|+|.+|+||||+.+.|.
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3456799999999999999999885
No 356
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.49 E-value=0.0072 Score=53.44 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.....|.|+|++|+|||||++.|.|.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35578999999999999999999874
No 357
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.48 E-value=0.0049 Score=55.62 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.++++|++|+|||||++.|.|-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 57899999999999999999975
No 358
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.48 E-value=0.0069 Score=55.50 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.+.++|++|+|||||++.|.|-.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68999999999999999999974
No 359
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.46 E-value=0.0082 Score=49.26 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g 59 (298)
...|+++|.+||||||+.+.|.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999998864
No 360
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.46 E-value=0.013 Score=46.60 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=27.0
Q ss_pred HHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 22 KLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 22 ~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.+..++..+.. ...-.+++.|++|+|||+++..+...
T Consensus 30 ~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 30 EIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 45555555544 24567899999999999999888654
No 361
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.46 E-value=0.0076 Score=48.46 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 022358 39 TILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g 59 (298)
-.+|+|++|+||||++.+|.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 568899999999999999864
No 362
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.45 E-value=0.0083 Score=48.90 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 022358 39 TILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g 59 (298)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998864
No 363
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.44 E-value=0.0092 Score=49.70 Aligned_cols=23 Identities=17% Similarity=0.528 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~ 58 (298)
..+.|+|+|.+||||||+.+.|.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999885
No 364
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.43 E-value=0.0098 Score=48.78 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g 59 (298)
+...|++.|.+||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999864
No 365
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.41 E-value=0.01 Score=50.77 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh---CCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVI---GER 61 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~---g~~ 61 (298)
....|.|+|++||||||+.+.|. |..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~ 54 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWR 54 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 44689999999999999999998 753
No 366
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.36 E-value=0.089 Score=48.58 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.+--|++.|++|+|||+++.++.++
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHH
Confidence 3567999999999999999999865
No 367
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.35 E-value=0.016 Score=51.78 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.-.++++|++|+|||||++.|.+.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356899999999999999999875
No 368
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.34 E-value=0.0099 Score=47.86 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~ 58 (298)
...|+++|.+||||||+.+.|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999885
No 369
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.32 E-value=0.0095 Score=48.04 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 022358 39 TILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g 59 (298)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 370
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.30 E-value=0.017 Score=49.18 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
+..++++|++|+|||+++++|.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999754
No 371
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.28 E-value=0.012 Score=48.09 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
....|+|.|.+||||||+++.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998754
No 372
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.28 E-value=0.0048 Score=55.81 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERV 62 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~ 62 (298)
.++++|++|+|||||++.|.|-..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 578999999999999999999753
No 373
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.28 E-value=0.25 Score=43.26 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=17.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~ 60 (298)
--+++.|++|+|||+++.++...
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHHHHH
Confidence 34566677999999999998643
No 374
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.28 E-value=0.021 Score=47.55 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=27.1
Q ss_pred HHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 22 KLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 22 ~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
...+.+....... ..-.+++.|++|+|||+++..+...
T Consensus 38 ~~~~~l~~~~~~~-~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 38 ELIGALKSAASGD-GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp HHHHHHHHHHHTC-SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3344444444332 4578999999999999999998754
No 375
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.28 E-value=0.011 Score=47.79 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~ 58 (298)
....|++.|.+||||||+.+.|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999885
No 376
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.24 E-value=0.0095 Score=48.99 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g 59 (298)
....|+|.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999864
No 377
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.24 E-value=0.11 Score=47.60 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.+--|++.|++|+|||+++.++.++
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999764
No 378
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.23 E-value=0.066 Score=49.55 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
+--|++.|++|+|||+++.++.++
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999998754
No 379
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.22 E-value=0.0091 Score=50.29 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=22.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.+..-|+|.|..||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44578999999999999999999875
No 380
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.20 E-value=0.011 Score=49.51 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~ 58 (298)
+...|+|.|.+||||||+.+.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999885
No 381
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.18 E-value=0.027 Score=45.96 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~ 60 (298)
..+++.|++|+|||+++.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999998854
No 382
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.18 E-value=0.025 Score=50.13 Aligned_cols=40 Identities=28% Similarity=0.342 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 21 NKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 21 ~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
+.+...+......+.....|++.|++|+|||+++.++...
T Consensus 39 ~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 39 KNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp HHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3455555554433445668999999999999999998543
No 383
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.18 E-value=0.012 Score=46.53 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g 59 (298)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998853
No 384
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.17 E-value=0.0085 Score=51.05 Aligned_cols=22 Identities=41% Similarity=0.726 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~ 60 (298)
.++++|++|+|||||+++|.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999875
No 385
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.16 E-value=0.013 Score=48.26 Aligned_cols=24 Identities=21% Similarity=0.327 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g 59 (298)
++..|+|.|.+||||||+++.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999864
No 386
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.16 E-value=0.011 Score=49.31 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~ 58 (298)
.+..|+|+|.+||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999885
No 387
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.15 E-value=0.012 Score=47.28 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~ 58 (298)
....|+++|.+|+||||+.+.|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34679999999999999999886
No 388
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.15 E-value=0.013 Score=46.95 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g 59 (298)
+...|+++|.+|+||||+.+.|.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999865
No 389
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.13 E-value=0.011 Score=48.95 Aligned_cols=21 Identities=19% Similarity=0.488 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 022358 38 LTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~ 58 (298)
++|+|.|.+||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999885
No 390
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.12 E-value=0.011 Score=56.41 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
=.++++|++|+|||||++.|.|..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999974
No 391
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.11 E-value=0.0087 Score=52.02 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~ 60 (298)
-++++|++|+|||||+++|.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999999875
No 392
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.08 E-value=0.015 Score=46.90 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.....|+++|.+|+||||+++.|.+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999988654
No 393
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.03 E-value=0.012 Score=56.81 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.++++|++|+|||||++.|.|.-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 78999999999999999999874
No 394
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.01 E-value=0.016 Score=47.39 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~ 58 (298)
....|+|.|.+||||||+.+.|.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999886
No 395
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.00 E-value=0.012 Score=46.10 Aligned_cols=20 Identities=35% Similarity=0.737 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 022358 39 TILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~ 58 (298)
-.+++|++|+||||++.+|.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 34788999999999999985
No 396
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.00 E-value=0.016 Score=48.11 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g 59 (298)
.++.|+|.|.+||||||+.+.|-.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998864
No 397
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.99 E-value=0.024 Score=48.50 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
....|++.|++|+|||+++.+|...
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 4578999999999999999998754
No 398
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.96 E-value=0.012 Score=56.63 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
-.++++|++|+|||||++.|.|.-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999874
No 399
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.96 E-value=0.0095 Score=47.78 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=16.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~ 58 (298)
++..|++.|.+||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999885
No 400
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.95 E-value=0.012 Score=56.13 Aligned_cols=25 Identities=36% Similarity=0.646 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERV 62 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~ 62 (298)
=.+.++|++|+|||||++.|.|.-.
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3678999999999999999999743
No 401
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.95 E-value=0.0089 Score=55.98 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
..-.++|+|++|+|||||++.|.|..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 44679999999999999999998864
No 402
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.92 E-value=0.0076 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.++|+|..||||||++|.|++..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 57889999999999999999753
No 403
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.92 E-value=0.013 Score=50.17 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 022358 39 TILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g 59 (298)
.|+|+|++|+||||+.+.|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999999863
No 404
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.89 E-value=0.016 Score=49.20 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~ 58 (298)
.++.|++.|++|+||||+.+.|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999999886
No 405
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.88 E-value=0.013 Score=46.74 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 022358 39 TILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g 59 (298)
+|+++|.+|+||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998853
No 406
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.87 E-value=0.027 Score=46.46 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
+-.++|.|++|+|||+++..+...
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999988643
No 407
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.86 E-value=0.016 Score=47.01 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g 59 (298)
+..|++.|.+||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988853
No 408
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.85 E-value=0.21 Score=46.27 Aligned_cols=25 Identities=36% Similarity=0.409 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.+-.|+|.|++|+|||+++.++...
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998754
No 409
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.83 E-value=0.012 Score=48.87 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~ 60 (298)
-.++++|++|+|||||++.|.+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35788999999999999999843
No 410
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.82 E-value=0.22 Score=44.83 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~ 60 (298)
--++|+|++|+|||||+..+...
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999999999888743
No 411
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.81 E-value=0.017 Score=46.66 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 022358 39 TILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g 59 (298)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 412
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.79 E-value=0.014 Score=48.49 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=20.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~ 58 (298)
+.+.|+|+|.+||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34789999999999999999884
No 413
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.76 E-value=0.017 Score=48.31 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 022358 38 LTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~ 58 (298)
+.|+|.|.+||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999885
No 414
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.75 E-value=0.013 Score=50.76 Aligned_cols=22 Identities=41% Similarity=0.726 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~ 60 (298)
.++++|++|+|||||+++|.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4999999999999999999875
No 415
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.74 E-value=0.043 Score=49.14 Aligned_cols=39 Identities=15% Similarity=0.313 Sum_probs=27.9
Q ss_pred HHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 22 KLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 22 ~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.+..+...+.......-.+++.|++|+|||+++.++...
T Consensus 55 ~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 55 AAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 344455555544333468999999999999999988643
No 416
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.72 E-value=0.02 Score=46.03 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
...|.++|.+|+||||+++.|...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999864
No 417
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.71 E-value=0.018 Score=46.62 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 022358 39 TILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g 59 (298)
-|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 418
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.71 E-value=0.01 Score=57.13 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.++++|++|+|||||++.|.|.-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 78999999999999999999874
No 419
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.71 E-value=0.021 Score=48.05 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~ 58 (298)
....|+|+|.+|+||||+.+.|.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999885
No 420
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.70 E-value=0.013 Score=55.17 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~ 60 (298)
-.++|+|++|+|||||++.|.|.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 46789999999999999999864
No 421
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.70 E-value=0.012 Score=56.99 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
-.++++|++|+|||||++.|.|.-
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 378999999999999999999874
No 422
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.68 E-value=0.017 Score=56.00 Aligned_cols=25 Identities=24% Similarity=0.603 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERV 62 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~ 62 (298)
=.++|+|++|+|||||++.|.|...
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhCCCC
Confidence 4689999999999999999999743
No 423
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.68 E-value=0.019 Score=46.23 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~ 58 (298)
+..|+|.|.+||||||+.+.|.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999885
No 424
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.67 E-value=0.022 Score=55.14 Aligned_cols=25 Identities=24% Similarity=0.541 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCc
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGERV 62 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~~ 62 (298)
=.+.++|++|+|||||++.|.|...
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCC
Confidence 3689999999999999999999754
No 425
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.67 E-value=0.012 Score=57.02 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.++++|++|+|||||++.|.|.-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999999974
No 426
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.66 E-value=0.23 Score=44.99 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
....|+|.|++|+|||+++.++...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999998543
No 427
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.66 E-value=0.013 Score=56.67 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.++++|++|+|||||++.|.|.-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 78999999999999999999874
No 428
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.64 E-value=0.025 Score=49.65 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhC
Q 022358 20 QNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 20 ~~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g 59 (298)
.+.+.+.+......+.....+++.|++|+|||+++.++..
T Consensus 21 ~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 21 KQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp HHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3445555555443334557899999999999999999864
No 429
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.61 E-value=0.017 Score=46.47 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=18.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 022358 38 LTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~ 58 (298)
..|+++|.+||||||+.+.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 359999999999999998874
No 430
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.60 E-value=0.015 Score=52.39 Aligned_cols=25 Identities=24% Similarity=0.338 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
-=++.++|++|+|||||++.|.|..
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999999874
No 431
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.60 E-value=0.021 Score=49.01 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g 59 (298)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 432
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.60 E-value=0.02 Score=47.60 Aligned_cols=22 Identities=18% Similarity=0.502 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g 59 (298)
++|+++|++||||+|....|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988764
No 433
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.57 E-value=0.037 Score=45.77 Aligned_cols=65 Identities=18% Similarity=0.123 Sum_probs=37.9
Q ss_pred CeEEEEEeCCCC-CCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCc
Q 022358 84 GFTLNIIDTPGL-VEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (298)
Q Consensus 84 g~~l~viDTPG~-~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~ 162 (298)
...++|+|||+. ... .....+ ..+|.++++...+...+. .-..+++.+.+.. ..++.+|+|+.
T Consensus 67 ~yD~viiD~p~~~~~~-----~~~~~l------~~aD~viiv~~~~~~~~~-~~~~~~~~l~~~~----~~~~~vv~N~~ 130 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE-----DLEALA------DGCDLLVIPSTPDALALD-ALMLTIETLQKLG----NNRFRILLTII 130 (209)
T ss_dssp GCSEEEEEEECCCSSS-----HHHHHH------HTSSEEEEEECSSHHHHH-HHHHHHHHHHHTC----SSSEEEEECSB
T ss_pred cCCEEEEeCCCCcCcH-----HHHHHH------HHCCEEEEEecCCchhHH-HHHHHHHHHHhcc----CCCEEEEEEec
Confidence 457899999996 322 222222 367999988554431111 1223445555432 25688999999
Q ss_pred CC
Q 022358 163 QL 164 (298)
Q Consensus 163 D~ 164 (298)
+.
T Consensus 131 ~~ 132 (209)
T 3cwq_A 131 PP 132 (209)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 434
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.57 E-value=0.018 Score=51.44 Aligned_cols=20 Identities=25% Similarity=0.589 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 022358 40 ILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 40 IllvG~~g~GKSSliN~l~g 59 (298)
+++.|++|+||||+++.|.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876
No 435
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.57 E-value=0.051 Score=47.38 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=21.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.....+++.|++|+|||+++.++...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999877643
No 436
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.53 E-value=0.02 Score=45.34 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 022358 38 LTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~ 58 (298)
..|++.|.+||||||+.+.|-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 369999999999999998885
No 437
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.52 E-value=0.022 Score=48.52 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g 59 (298)
.++.|+|.|.+||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998853
No 438
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.50 E-value=0.053 Score=47.63 Aligned_cols=64 Identities=8% Similarity=0.073 Sum_probs=39.9
Q ss_pred EEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHH-HHHHHHHHHHhCCCCCceEEEEEeCcCC
Q 022358 86 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLD-RQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (298)
Q Consensus 86 ~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 164 (298)
.+.+||| .......... ....+|++++|++++....+... ..++..+... ..|+++|+||+|+
T Consensus 64 ~~~iwD~--qer~~~l~~~---------~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~-----~~piilv~NK~DL 127 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKP---------HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN-----ELETVMVINKMDL 127 (301)
T ss_dssp SEEEEEE--CCCSCEETTT---------TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT-----TCEEEEEECCGGG
T ss_pred eEEEEEE--ccccceeecc---------ccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC-----CCCEEEEEeHHHc
Confidence 7899999 3322222111 12689999999888753333322 3344444331 2899999999998
Q ss_pred C
Q 022358 165 C 165 (298)
Q Consensus 165 ~ 165 (298)
.
T Consensus 128 ~ 128 (301)
T 1u0l_A 128 Y 128 (301)
T ss_dssp C
T ss_pred C
Confidence 5
No 439
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.48 E-value=0.024 Score=49.36 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~ 58 (298)
.+..|+|.|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999886
No 440
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.48 E-value=0.0093 Score=49.14 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~ 60 (298)
.|+|.|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999998743
No 441
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.48 E-value=0.021 Score=54.60 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERV 62 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~ 62 (298)
.+.++|++|+|||||++.|.|...
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999999753
No 442
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.43 E-value=0.016 Score=50.59 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~ 60 (298)
--++|+|++|+|||||++.|.+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 35788999999999999988754
No 443
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.40 E-value=0.029 Score=50.14 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhhc--CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 21 NKLIELLSKLKQE--NVNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 21 ~~l~~~l~~l~~~--~~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
+.+..+...+... +...-.++|.|++|+||||+++.+.+.
T Consensus 27 ~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 27 DQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp HHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3344444444431 334568999999999999999998864
No 444
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.40 E-value=0.29 Score=45.58 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.+--|++.|++|+|||+++.++-++
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 4678999999999999999999764
No 445
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.38 E-value=0.025 Score=44.74 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 022358 38 LTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~ 58 (298)
-+|+|.|.+||||||+.+.|-
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 479999999999999998874
No 446
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.35 E-value=0.041 Score=48.43 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=26.2
Q ss_pred HHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhC
Q 022358 25 ELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 25 ~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g 59 (298)
++...+.........|++.|++|+|||++..+|..
T Consensus 13 ~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 13 HLLNEIAMVAPSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp HHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence 33344443344668899999999999999999875
No 447
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.31 E-value=0.031 Score=53.35 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERV 62 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~ 62 (298)
.++|+|++|+|||||++.|.|...
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 678999999999999999999754
No 448
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.28 E-value=0.066 Score=49.88 Aligned_cols=46 Identities=15% Similarity=0.377 Sum_probs=36.9
Q ss_pred ccccCCchhhHHHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHh
Q 022358 10 AGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 10 ~~~~~l~~~~~~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~ 58 (298)
..+..|.++.++.+..++..+.... -.++|.|.+|+|||+++..+.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~ 66 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFII 66 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHH
Confidence 3477888888888888877776532 289999999999999998876
No 449
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.26 E-value=0.064 Score=49.97 Aligned_cols=41 Identities=15% Similarity=0.278 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhC
Q 022358 19 TQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 19 ~~~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g 59 (298)
..+.+.+++..+......+-.+++.|++|+|||++..++..
T Consensus 45 ~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 45 AREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp HHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHH
Confidence 34445556665555444556899999999999999988864
No 450
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.25 E-value=0.02 Score=47.22 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g 59 (298)
-.++++|++|+|||||++.|.+
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 451
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.23 E-value=0.068 Score=47.94 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=26.5
Q ss_pred HHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 22 KLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 22 ~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.+.+.+..... +..+-.++|.|++|+|||++++.+...
T Consensus 31 ~l~~~l~~~~~-~~~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 31 DAAIAIRYFVK-NEVKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp HHHHHHHHHHT-TCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34444433322 334458999999999999999998754
No 452
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.22 E-value=0.047 Score=45.37 Aligned_cols=22 Identities=27% Similarity=0.221 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g 59 (298)
-.+++.|++|+||||++.+|..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999998888764
No 453
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.21 E-value=0.013 Score=61.79 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
+|+++|++|+|||||++.|++--
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCc
Confidence 78999999999999999999863
No 454
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.18 E-value=0.031 Score=46.17 Aligned_cols=25 Identities=28% Similarity=0.326 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
....|+++|.+|+||||+.+.|.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988653
No 455
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.14 E-value=0.021 Score=53.06 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
+.=++.++|++|+|||||++.|.|..
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34579999999999999999999864
No 456
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.12 E-value=0.065 Score=45.97 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=22.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
......+++.|++|+|||+++.++...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 345678999999999999999998754
No 457
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.12 E-value=0.045 Score=48.99 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhhc--CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 21 NKLIELLSKLKQE--NVNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 21 ~~l~~~l~~l~~~--~~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
+.+.++...+... ....-.++|.|++|+|||++++.+...
T Consensus 26 ~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 26 AELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp HHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3444444444332 345568999999999999999998854
No 458
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.11 E-value=0.036 Score=53.70 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Q 022358 39 TILVMGKGGVGKSSTVNSVIGERV 62 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~~ 62 (298)
.++|+|++|+|||||++.|.|...
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999999999753
No 459
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.11 E-value=0.032 Score=45.79 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=21.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhC
Q 022358 35 VNTLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 35 ~~~l~IllvG~~g~GKSSliN~l~g 59 (298)
.....|.++|.+||||||+.+.|-.
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999988753
No 460
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.09 E-value=0.049 Score=48.40 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=23.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 34 NVNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 34 ~~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
+..+..+++.|++|+|||++++.++..
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999999854
No 461
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.06 E-value=0.025 Score=48.49 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g 59 (298)
.-.|+|+|.+|+||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998854
No 462
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.00 E-value=0.024 Score=47.49 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~ 60 (298)
-.++++|++|+|||||+..|.+.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 46889999999999999999874
No 463
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.99 E-value=0.034 Score=49.34 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
+.-|+|+|+||+|||||...|...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 356899999999999999999754
No 464
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.92 E-value=0.03 Score=46.32 Aligned_cols=24 Identities=38% Similarity=0.628 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
...|+++|+||+|||+|...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999999865
No 465
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.87 E-value=0.048 Score=48.23 Aligned_cols=25 Identities=40% Similarity=0.466 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.+..|++.|++|+|||+++.++...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3468999999999999999999654
No 466
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.87 E-value=0.032 Score=54.01 Aligned_cols=23 Identities=26% Similarity=0.614 Sum_probs=21.2
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCc
Q 022358 40 ILVMGKGGVGKSSTVNSVIGERV 62 (298)
Q Consensus 40 IllvG~~g~GKSSliN~l~g~~~ 62 (298)
++++|++|+|||||++.|.|...
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 79999999999999999999754
No 467
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.85 E-value=0.031 Score=46.17 Aligned_cols=20 Identities=35% Similarity=0.737 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 022358 39 TILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~ 58 (298)
-.+++|++|+||||++.+|.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 45778999999999999884
No 468
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.83 E-value=0.035 Score=48.35 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g 59 (298)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 469
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.78 E-value=0.049 Score=48.48 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~ 60 (298)
.+++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998765
No 470
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.75 E-value=0.046 Score=48.95 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
...|+|+|+||+|||||...|...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999865
No 471
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.71 E-value=0.045 Score=44.64 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 022358 39 TILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g 59 (298)
.|.+.|.+|+||||+.+.|.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998854
No 472
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.71 E-value=0.1 Score=45.68 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.+-.|++.|++|+|||++++++.+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 4567999999999999999999864
No 473
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.69 E-value=0.032 Score=58.98 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
-.++++|++|+|||||++.|+|.-
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cEEEEEecCCCcHHHHHHHhcccc
Confidence 378999999999999999999874
No 474
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.60 E-value=0.048 Score=45.94 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
....|++.|.+|+||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999988753
No 475
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.50 E-value=0.079 Score=46.12 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~ 60 (298)
-.+++.|++|+|||+++.+|.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999988764
No 476
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.47 E-value=0.051 Score=45.71 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g 59 (298)
....|+|+|.+|+||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
No 477
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.42 E-value=0.083 Score=46.55 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
..-.+++.|++|+|||++++++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999998864
No 478
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.42 E-value=0.046 Score=48.67 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g~ 60 (298)
..|+|+|++|+||||+...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988643
No 479
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=93.41 E-value=2 Score=37.20 Aligned_cols=64 Identities=14% Similarity=0.163 Sum_probs=39.0
Q ss_pred EEEEEeCCCCCCCCcCcHHHHHHHHhhhhcCCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCceEEEEEeCcCC
Q 022358 86 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (298)
Q Consensus 86 ~l~viDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~vl~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~tk~D~ 164 (298)
.++|||||+..... + .. . ....+|.+++|++.+.... ..-...++.+.+.. . ..+-+|+|+.|.
T Consensus 203 D~VIIDtpp~~~~~--d--a~-~-----l~~~aD~vllVv~~~~~~~-~~~~~~~~~l~~~g-~---~~~GvVlN~v~~ 266 (286)
T 3la6_A 203 DLVLIDTPPILAVT--D--AA-I-----VGRHVGTTLMVARYAVNTL-KEVETSLSRFEQNG-I---PVKGVILNSIFR 266 (286)
T ss_dssp SEEEEECCCTTTCT--H--HH-H-----HTTTCSEEEEEEETTTSBH-HHHHHHHHHHHHTT-C---CCCEEEEEEECC
T ss_pred CEEEEcCCCCcchH--H--HH-H-----HHHHCCeEEEEEeCCCCcH-HHHHHHHHHHHhCC-C---CEEEEEEcCccc
Confidence 48999999985432 1 11 1 1257899999977764332 12234555555442 2 456799999975
No 480
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.39 E-value=0.01 Score=50.21 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 022358 40 ILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 40 IllvG~~g~GKSSliN~l~g~~ 61 (298)
++|+|++|+|||||+++|.|..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 3678999999999999998764
No 481
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.39 E-value=0.026 Score=57.49 Aligned_cols=23 Identities=43% Similarity=0.709 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.++|+|++|+|||||++.|.|..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999974
No 482
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=93.39 E-value=0.036 Score=58.40 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.++++|++|+|||||++.|+|.-
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999874
No 483
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.37 E-value=0.055 Score=47.84 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
+.-|+|+|+||+|||||...|...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 456889999999999999998643
No 484
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.28 E-value=0.06 Score=45.05 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=18.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g 59 (298)
+-.|+|+|++||||+|....|..
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999888763
No 485
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.27 E-value=0.054 Score=47.35 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.+.-+++.|++|+|||+++.++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567888899999999999998743
No 486
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.26 E-value=0.045 Score=45.20 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g 59 (298)
++.|+++|.+|+||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999987743
No 487
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.21 E-value=0.037 Score=52.99 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~~ 61 (298)
+...|+|+|.+||||||+.+.|.+.-
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 45789999999999999999998753
No 488
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.14 E-value=0.038 Score=47.78 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g 59 (298)
-.++|+|++|+|||||+..+.+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999998885
No 489
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.12 E-value=0.047 Score=48.91 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g 59 (298)
..|+|+|++||||||+...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4799999999999999988864
No 490
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=93.11 E-value=0.054 Score=49.68 Aligned_cols=37 Identities=35% Similarity=0.443 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHH
Q 022358 21 NKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSV 57 (298)
Q Consensus 21 ~~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l 57 (298)
.++.+.|++-+....+.++++++|...|||||++.-|
T Consensus 24 ~~Id~~l~~~~~~~~~~~klLLLG~geSGKSTi~KQm 60 (402)
T 1azs_C 24 KKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQM 60 (402)
T ss_dssp ------------CCTTEEEEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccceEEEecCCCCchhhHHHHH
Confidence 3455556665666677899999999999999999765
No 491
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.08 E-value=0.085 Score=45.72 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g 59 (298)
.+..+++.|++|+|||+++.++..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
No 492
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=93.02 E-value=0.015 Score=53.32 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 022358 39 TILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~ 58 (298)
.++|+|++|+|||||+++|.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 78999999999999998884
No 493
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.98 E-value=0.092 Score=49.10 Aligned_cols=37 Identities=16% Similarity=0.379 Sum_probs=26.7
Q ss_pred HHHHHHHHhhhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 22 KLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 22 ~l~~~l~~l~~~~~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
.+..++..+.. ...-+++++|++|+|||+++..|...
T Consensus 188 ~i~~l~~~l~r--~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 188 EIQRVIEVLSR--RTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp HHHHHHHHHHC--SSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhc--cCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 34445554443 23458899999999999999988754
No 494
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.94 E-value=0.12 Score=48.56 Aligned_cols=42 Identities=31% Similarity=0.409 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHhhhc-------CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 19 TQNKLIELLSKLKQE-------NVNTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 19 ~~~~l~~~l~~l~~~-------~~~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
..+.+.+++..+... ...+.-|+++|++|+|||++++++.+.
T Consensus 24 ~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 24 AIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp HHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 344566665554321 112346999999999999999999874
No 495
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.92 E-value=0.056 Score=46.14 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
+..+++.|++|+|||+++.++.+.
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 345899999999999999999754
No 496
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.86 E-value=0.18 Score=44.43 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
...+++.|++|+|||+|+.+|...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999998754
No 497
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=92.85 E-value=0.051 Score=48.52 Aligned_cols=21 Identities=33% Similarity=0.790 Sum_probs=17.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 022358 37 TLTILVMGKGGVGKSSTVNSVI 58 (298)
Q Consensus 37 ~l~IllvG~~g~GKSSliN~l~ 58 (298)
.++ +++|++|+||||++.+|+
T Consensus 24 ~~~-~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GIN-LIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEE-EEECCTTSSHHHHHHHHH
T ss_pred CeE-EEECCCCCCHHHHHHHHH
Confidence 344 688999999999999984
No 498
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.85 E-value=0.05 Score=55.43 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 022358 39 TILVMGKGGVGKSSTVNSVIGER 61 (298)
Q Consensus 39 ~IllvG~~g~GKSSliN~l~g~~ 61 (298)
.++|+|++|+|||||++.|.|..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999643
No 499
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=92.83 E-value=0.048 Score=51.60 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 022358 38 LTILVMGKGGVGKSSTVNSVIG 59 (298)
Q Consensus 38 l~IllvG~~g~GKSSliN~l~g 59 (298)
.+++|+|.||+|||+++|+|..
T Consensus 168 pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999875
No 500
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.81 E-value=0.052 Score=49.37 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 022358 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (298)
Q Consensus 36 ~~l~IllvG~~g~GKSSliN~l~g~ 60 (298)
..-+++++|++|+|||++++.|+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999864
Done!