BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022359
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XZW|A Chain A, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
pdb|1XZW|B Chain B, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
Length = 426
Score = 377 bits (968), Expect = e-105, Method: Compositional matrix adjust.
Identities = 179/273 (65%), Positives = 215/273 (78%), Gaps = 1/273 (0%)
Query: 5 AQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVV 64
Q VLF+GDLSY++R+ D RWD+WGRF ERS AYQPWIW+AGNHEI+Y +GE
Sbjct: 155 GQAVLFMGDLSYSNRWPNHDNN-RWDTWGRFSERSVAYQPWIWTAGNHEIDYAPDIGEYQ 213
Query: 65 PFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVD 124
PF + +RYPTPH AS S PLWYAI+RASAHIIVLSSYS FVKY+PQ++W EL+KV+
Sbjct: 214 PFVPFTNRYPTPHEASGSGDPLWYAIKRASAHIIVLSSYSGFVKYSPQYKWFTSELEKVN 273
Query: 125 REKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRIS 184
R +TPWLIVL+H P+YNS EAH+MEGE+MRA FE +FV YKVD+VF+GHVH+YERS R+S
Sbjct: 274 RSETPWLIVLVHAPLYNSYEAHYMEGEAMRAIFEPYFVYYKVDIVFSGHVHSYERSERVS 333
Query: 185 NLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEI 244
N+ YNI + C PV D+SAPVYIT+GDGGN EGLA + PQP YSAFREAS+GH +I
Sbjct: 334 NVAYNIVNAKCTPVSDESAPVYITIGDGGNSEGLASEMTQPQPSYSAFREASFGHGIFDI 393
Query: 245 KNRTHAFYHWNRNDDGKKVATDSFILHNQYWAS 277
KNRTHA + W+RN DG V DS L N+YWAS
Sbjct: 394 KNRTHAHFSWHRNQDGASVEADSLWLLNRYWAS 426
>pdb|1KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
Length = 432
Score = 365 bits (936), Expect = e-101, Method: Compositional matrix adjust.
Identities = 173/271 (63%), Positives = 208/271 (76%), Gaps = 1/271 (0%)
Query: 5 AQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVV 64
QTVLF+GDLSYADRY D VRWD+WGRF ERS AYQPWIW+AGNHEIE+ + E
Sbjct: 156 GQTVLFVGDLSYADRYPNHD-NVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETE 214
Query: 65 PFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVD 124
PFK + +RY P+ AS+S+SP WY+I+RASAHIIVLSSYS + + TPQ+ WL++EL+KV
Sbjct: 215 PFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVK 274
Query: 125 REKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRIS 184
R +TPWLIVLMH P+YNS HFMEGE+MR FE+WFV+YKVDVVFAGHVHAYERS R+S
Sbjct: 275 RSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVS 334
Query: 185 NLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEI 244
N+ Y I+ G C PV D+SAPVYIT+GD GN + PQP+YSAFREAS+GH +I
Sbjct: 335 NIAYKITDGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDI 394
Query: 245 KNRTHAFYHWNRNDDGKKVATDSFILHNQYW 275
KNRTHA + WNRN DG V DS N++W
Sbjct: 395 KNRTHAHFSWNRNQDGVAVEADSVWFFNRHW 425
>pdb|4DSY|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DT2|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DHL|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
Length = 426
Score = 365 bits (936), Expect = e-101, Method: Compositional matrix adjust.
Identities = 173/271 (63%), Positives = 209/271 (77%), Gaps = 1/271 (0%)
Query: 5 AQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVV 64
QTVLF+GDLSYADRY D VRWD+WGRF ERS AYQPWIW+AGNHEIE+ + E
Sbjct: 150 GQTVLFVGDLSYADRYPNHD-NVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETE 208
Query: 65 PFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVD 124
PFK + +RY P+ AS+S+SP WY+I+RASAHIIVLSSYS + + TPQ+ WL++EL+KV
Sbjct: 209 PFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVK 268
Query: 125 REKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRIS 184
R +TPWLIVLMH P+YNS HFMEGE+MR FE+WFV+YKVDVVFAGHVHAYERS R+S
Sbjct: 269 RSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVS 328
Query: 185 NLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEI 244
N+ Y I++G C PV D+SAPVYIT+GD GN + PQP+YSAFREAS+GH +I
Sbjct: 329 NIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDI 388
Query: 245 KNRTHAFYHWNRNDDGKKVATDSFILHNQYW 275
KNRTHA + WNRN DG V DS N++W
Sbjct: 389 KNRTHAHFSWNRNQDGVAVEADSVWFFNRHW 419
>pdb|2QFP|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFR|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
pdb|2QFR|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
Length = 424
Score = 365 bits (936), Expect = e-101, Method: Compositional matrix adjust.
Identities = 173/271 (63%), Positives = 209/271 (77%), Gaps = 1/271 (0%)
Query: 5 AQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVV 64
QTVLF+GDLSYADRY D VRWD+WGRF ERS AYQPWIW+AGNHEIE+ + E
Sbjct: 148 GQTVLFVGDLSYADRYPNHD-NVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETE 206
Query: 65 PFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVD 124
PFK + +RY P+ AS+S+SP WY+I+RASAHIIVLSSYS + + TPQ+ WL++EL+KV
Sbjct: 207 PFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVK 266
Query: 125 REKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRIS 184
R +TPWLIVLMH P+YNS HFMEGE+MR FE+WFV+YKVDVVFAGHVHAYERS R+S
Sbjct: 267 RSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVS 326
Query: 185 NLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEI 244
N+ Y I++G C PV D+SAPVYIT+GD GN + PQP+YSAFREAS+GH +I
Sbjct: 327 NIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDI 386
Query: 245 KNRTHAFYHWNRNDDGKKVATDSFILHNQYW 275
KNRTHA + WNRN DG V DS N++W
Sbjct: 387 KNRTHAHFSWNRNQDGVAVEADSVWFFNRHW 417
>pdb|4EGD|A Chain A, 1.85 Angstrom Crystal Structure Of Native Hypothetical
Protein Saouhsc_02783 From Staphylococcus Aureus
pdb|4EGD|B Chain B, 1.85 Angstrom Crystal Structure Of Native Hypothetical
Protein Saouhsc_02783 From Staphylococcus Aureus
Length = 260
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 167 DVVFAGHVHAYERSYRISNLHYNISS-GDCFPVPDKSAPVYITVGDG 212
D+ + +V +Y Y+++N YN+ + +P K AP + GDG
Sbjct: 171 DISYNPNVPSYSAKYQLNNDDYNVQQLRKRYDIPTKQAPKLLLKGDG 217
>pdb|2A3D|A Chain A, Solution Structure Of A De Novo Designed Single Chain
Three- Helix Bundle (A3d)
Length = 73
Score = 29.6 bits (65), Expect = 2.0, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 31 SWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAI 90
SW F +R AA + + + G E E + E+ F+S L Y +P A+
Sbjct: 3 SWAEFKQRLAAIKTRLQALGGSEAELAAFEKEIAAFESELQAY------KGKGNPEVEAL 56
Query: 91 RRASAHI 97
R+ +A I
Sbjct: 57 RKEAAAI 63
>pdb|4EG9|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of Se-Methionine
Hypothetical Protein Saouhsc_02783 From Staphylococcus
Aureus
Length = 260
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 167 DVVFAGHVHAYERSYRISNLHYNISS-GDCFPVPDKSAPVYITVGDG 212
D+ + +V +Y Y+++N YN+ + +P K AP + GDG
Sbjct: 171 DISYNPNVPSYSAKYQLNNDDYNVQQLRKRYDIPTKQAPKLLLKGDG 217
>pdb|1W3I|A Chain A, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
pdb|1W3I|B Chain B, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
pdb|1W3I|C Chain C, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
pdb|1W3I|D Chain D, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
Length = 293
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 6 QTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWS--AGNHEIEYMTYMGEV 63
+ + +G L+ D + + +D G A+Y P+ + + H ++Y + EV
Sbjct: 67 KIIFQVGGLNLDDAIRLAKLSKDFDIVG-----IASYAPYYYPRMSEKHLVKYFKTLCEV 121
Query: 64 VPFKSYLHRYPT 75
P YL+ YPT
Sbjct: 122 SPHPVYLYNYPT 133
>pdb|1W37|A Chain A, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W37|B Chain B, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W37|C Chain C, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W37|D Chain D, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W3N|A Chain A, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3N|B Chain B, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3N|C Chain C, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3N|D Chain D, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3T|A Chain A, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
pdb|1W3T|B Chain B, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
pdb|1W3T|C Chain C, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
pdb|1W3T|D Chain D, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
Length = 294
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 6 QTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWS--AGNHEIEYMTYMGEV 63
+ + +G L+ D + + +D G A+Y P+ + + H ++Y + EV
Sbjct: 68 KIIFQVGGLNLDDAIRLAKLSKDFDIVG-----IASYAPYYYPRMSEKHLVKYFKTLCEV 122
Query: 64 VPFKSYLHRYPT 75
P YL+ YPT
Sbjct: 123 SPHPVYLYNYPT 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,029,025
Number of Sequences: 62578
Number of extensions: 447474
Number of successful extensions: 814
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 805
Number of HSP's gapped (non-prelim): 12
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)