Query 022359
Match_columns 298
No_of_seqs 236 out of 2062
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 02:55:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022359.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022359hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1378 Purple acid phosphatas 100.0 2.4E-56 5.3E-61 402.2 25.8 266 4-279 174-444 (452)
2 PLN02533 probable purple acid 100.0 7.9E-53 1.7E-57 390.7 28.5 259 2-277 163-423 (427)
3 cd00839 MPP_PAPs purple acid p 100.0 8.8E-47 1.9E-51 337.0 28.3 258 3-272 32-294 (294)
4 PTZ00422 glideosome-associated 100.0 1.6E-36 3.4E-41 273.7 24.2 233 2-273 55-330 (394)
5 cd07378 MPP_ACP5 Homo sapiens 100.0 1.4E-33 3.1E-38 249.8 22.9 220 3-256 31-274 (277)
6 KOG2679 Purple (tartrate-resis 100.0 3.5E-30 7.6E-35 216.0 15.1 235 2-271 73-328 (336)
7 cd07395 MPP_CSTP1 Homo sapiens 100.0 1.8E-27 3.8E-32 209.2 19.4 203 3-255 48-260 (262)
8 cd07402 MPP_GpdQ Enterobacter 99.9 9.6E-24 2.1E-28 182.9 16.6 194 3-247 39-238 (240)
9 cd07396 MPP_Nbla03831 Homo sap 99.9 2.3E-22 5E-27 177.1 15.9 174 2-214 38-246 (267)
10 cd07401 MPP_TMEM62_N Homo sapi 99.9 8.2E-22 1.8E-26 172.3 16.0 168 2-183 31-216 (256)
11 PRK11148 cyclic 3',5'-adenosin 99.9 4.7E-21 1E-25 169.5 19.3 202 3-257 54-261 (275)
12 cd00842 MPP_ASMase acid sphing 99.8 3.1E-20 6.7E-25 166.0 13.0 175 3-181 67-265 (296)
13 cd07399 MPP_YvnB Bacillus subt 99.8 2E-19 4.3E-24 153.2 12.1 127 2-182 33-166 (214)
14 cd08163 MPP_Cdc1 Saccharomyces 99.8 4.9E-19 1.1E-23 154.3 13.5 163 3-181 44-232 (257)
15 cd07393 MPP_DR1119 Deinococcus 99.7 2.9E-16 6.3E-21 135.4 13.1 168 4-212 41-226 (232)
16 TIGR03767 P_acnes_RR metalloph 99.7 1E-15 2.3E-20 141.0 16.1 94 84-180 290-395 (496)
17 PF00149 Metallophos: Calcineu 99.7 4.2E-17 9.1E-22 132.2 3.6 166 2-177 29-200 (200)
18 cd07392 MPP_PAE1087 Pyrobaculu 99.6 3.1E-14 6.6E-19 118.4 15.0 148 2-179 21-175 (188)
19 cd07383 MPP_Dcr2 Saccharomyces 99.6 2E-14 4.3E-19 121.1 11.8 126 2-181 39-180 (199)
20 TIGR03729 acc_ester putative p 99.6 3.5E-14 7.7E-19 123.0 13.2 155 2-179 30-223 (239)
21 TIGR03768 RPA4764 metallophosp 99.5 2.5E-13 5.4E-18 124.2 14.8 93 84-177 291-411 (492)
22 cd07400 MPP_YydB Bacillus subt 99.5 1E-13 2.2E-18 110.6 10.8 95 2-180 33-128 (144)
23 PF14008 Metallophos_C: Iron/z 99.5 7.6E-14 1.6E-18 94.6 6.7 62 202-268 1-62 (62)
24 COG1409 Icc Predicted phosphoh 99.5 4.6E-13 1E-17 119.1 13.7 155 3-177 32-193 (301)
25 cd07404 MPP_MS158 Microscilla 99.4 1.3E-12 2.9E-17 106.8 12.3 125 2-180 24-152 (166)
26 PF09423 PhoD: PhoD-like phosp 99.4 6.2E-12 1.3E-16 118.9 14.8 173 3-181 131-381 (453)
27 cd07388 MPP_Tt1561 Thermus the 99.4 1.4E-11 3E-16 105.0 13.6 151 3-175 30-189 (224)
28 cd00840 MPP_Mre11_N Mre11 nucl 99.4 4.4E-12 9.6E-17 108.3 10.4 165 2-180 39-204 (223)
29 cd07385 MPP_YkuE_C Bacillus su 99.3 4.3E-12 9.4E-17 108.6 9.8 144 2-184 30-173 (223)
30 cd00838 MPP_superfamily metall 99.3 3.8E-11 8.3E-16 92.8 11.0 96 2-181 24-119 (131)
31 cd08166 MPP_Cdc1_like_1 unchar 99.2 3.2E-11 7E-16 99.9 9.1 109 2-181 40-151 (195)
32 PRK11340 phosphodiesterase Yae 99.2 2.1E-10 4.6E-15 101.2 11.2 141 2-183 78-220 (271)
33 KOG3770 Acid sphingomyelinase 99.1 8.3E-10 1.8E-14 103.5 11.1 170 4-180 210-407 (577)
34 cd07384 MPP_Cdc1_like Saccharo 99.1 3.6E-10 7.8E-15 92.8 7.3 51 2-55 43-100 (171)
35 KOG1432 Predicted DNA repair e 99.0 1.7E-08 3.6E-13 88.8 17.0 170 2-179 98-313 (379)
36 cd07379 MPP_239FB Homo sapiens 99.0 1.9E-09 4.1E-14 85.0 9.8 49 130-178 69-117 (135)
37 COG1768 Predicted phosphohydro 99.0 7.3E-09 1.6E-13 82.9 11.7 164 5-211 44-219 (230)
38 COG3540 PhoD Phosphodiesterase 99.0 2.1E-09 4.5E-14 98.1 9.4 175 2-179 166-420 (522)
39 PF12850 Metallophos_2: Calcin 99.0 4.8E-09 1E-13 84.3 10.1 75 129-246 81-155 (156)
40 cd08165 MPP_MPPE1 human MPPE1 99.0 2.2E-09 4.7E-14 86.8 7.8 51 2-55 36-89 (156)
41 cd08164 MPP_Ted1 Saccharomyces 98.9 1.9E-09 4.1E-14 89.3 6.6 32 132-181 129-160 (193)
42 COG1408 Predicted phosphohydro 98.8 3.7E-08 8.1E-13 87.0 9.2 47 3-55 72-118 (284)
43 cd07397 MPP_DevT Myxococcus xa 98.8 1.1E-07 2.4E-12 81.5 11.8 52 128-179 146-210 (238)
44 cd07403 MPP_TTHA0053 Thermus t 98.7 4.9E-08 1.1E-12 76.3 8.4 50 131-181 58-107 (129)
45 PF14582 Metallophos_3: Metall 98.7 4.4E-08 9.6E-13 81.7 8.3 157 3-181 31-222 (255)
46 PRK05340 UDP-2,3-diacylglucosa 98.7 4E-08 8.7E-13 85.2 7.4 52 3-55 31-83 (241)
47 cd07389 MPP_PhoD Bacillus subt 98.7 1.3E-07 2.8E-12 81.2 10.5 142 2-181 27-208 (228)
48 TIGR01854 lipid_A_lpxH UDP-2,3 98.6 7.9E-07 1.7E-11 76.6 12.9 50 4-55 30-81 (231)
49 cd07406 MPP_CG11883_N Drosophi 98.6 5.7E-07 1.2E-11 78.8 11.4 150 3-178 36-208 (257)
50 cd00841 MPP_YfcE Escherichia c 98.5 7.7E-07 1.7E-11 71.6 9.4 73 130-246 76-148 (155)
51 cd07394 MPP_Vps29 Homo sapiens 98.5 3.3E-05 7.2E-10 63.8 19.3 80 156-268 97-176 (178)
52 COG2129 Predicted phosphoester 98.5 4.6E-06 1E-10 69.9 13.8 150 3-180 29-190 (226)
53 cd07398 MPP_YbbF-LpxH Escheric 98.5 3.6E-07 7.8E-12 77.7 7.3 53 3-55 29-82 (217)
54 cd00845 MPP_UshA_N_like Escher 98.5 7.7E-07 1.7E-11 77.6 9.1 40 126-179 169-208 (252)
55 cd07410 MPP_CpdB_N Escherichia 98.4 3.4E-06 7.3E-11 74.7 12.1 86 86-178 129-231 (277)
56 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.3 1.5E-05 3.2E-10 69.9 13.9 162 3-182 27-234 (262)
57 cd07411 MPP_SoxB_N Thermus the 98.3 1.2E-05 2.5E-10 70.8 13.3 78 86-178 129-220 (264)
58 TIGR00583 mre11 DNA repair pro 98.3 1.7E-05 3.7E-10 73.5 14.0 105 130-272 202-307 (405)
59 cd07412 MPP_YhcR_N Bacillus su 98.2 1.4E-05 3E-10 71.2 10.9 65 113-179 177-243 (288)
60 TIGR00040 yfcE phosphoesterase 98.2 1.5E-05 3.1E-10 64.5 10.0 36 4-54 28-63 (158)
61 PRK09453 phosphodiesterase; Pr 98.2 9.5E-05 2.1E-09 61.2 14.7 52 2-55 25-76 (182)
62 cd07382 MPP_DR1281 Deinococcus 98.1 0.0002 4.3E-09 62.4 15.4 151 2-179 27-180 (255)
63 cd07408 MPP_SA0022_N Staphyloc 98.1 2.4E-05 5.3E-10 68.5 9.6 46 126-180 170-216 (257)
64 cd07409 MPP_CD73_N CD73 ecto-5 98.1 2.8E-05 6.1E-10 69.0 9.7 78 86-178 131-219 (281)
65 cd07386 MPP_DNA_pol_II_small_a 98.0 7.3E-05 1.6E-09 64.9 11.8 53 3-55 34-94 (243)
66 COG0420 SbcD DNA repair exonuc 98.0 2.3E-05 4.9E-10 72.9 8.9 50 2-55 38-88 (390)
67 cd07407 MPP_YHR202W_N Saccharo 98.0 0.00022 4.8E-09 63.2 13.7 53 114-177 177-231 (282)
68 cd07405 MPP_UshA_N Escherichia 98.0 5.6E-05 1.2E-09 67.2 9.8 52 126-179 172-223 (285)
69 TIGR00282 metallophosphoestera 98.0 0.00063 1.4E-08 59.6 16.0 150 2-177 28-181 (266)
70 KOG3662 Cell division control 97.9 2.7E-05 5.8E-10 71.2 7.4 89 3-105 92-183 (410)
71 PRK09419 bifunctional 2',3'-cy 97.7 0.00045 9.8E-09 72.8 13.0 86 86-178 784-883 (1163)
72 COG2908 Uncharacterized protei 97.7 4.2E-05 9.1E-10 64.8 4.3 41 154-213 176-216 (237)
73 cd07425 MPP_Shelphs Shewanella 97.6 9.1E-05 2E-09 62.7 5.2 25 156-180 158-182 (208)
74 COG0737 UshA 5'-nucleotidase/2 97.6 0.00033 7.2E-09 67.6 9.6 158 4-177 69-247 (517)
75 PRK09558 ushA bifunctional UDP 97.6 0.00038 8.3E-09 67.7 9.8 48 126-178 208-258 (551)
76 PRK04036 DNA polymerase II sma 97.6 0.00058 1.3E-08 65.5 10.4 54 2-55 282-343 (504)
77 TIGR00619 sbcd exonuclease Sbc 97.5 0.00012 2.7E-09 63.9 5.1 50 2-55 37-88 (253)
78 TIGR01530 nadN NAD pyrophospha 97.5 0.00059 1.3E-08 66.3 9.6 38 126-178 181-219 (550)
79 cd07387 MPP_PolD2_C PolD2 (DNA 97.4 0.0017 3.6E-08 56.6 10.9 152 4-180 42-218 (257)
80 cd07380 MPP_CWF19_N Schizosacc 97.4 0.00049 1.1E-08 55.0 6.7 26 155-180 100-126 (150)
81 cd07391 MPP_PF1019 Pyrococcus 97.4 0.00026 5.6E-09 58.1 4.7 50 2-55 39-88 (172)
82 cd08162 MPP_PhoA_N Synechococc 97.3 0.0012 2.6E-08 59.5 8.9 39 126-178 206-245 (313)
83 PRK10966 exonuclease subunit S 97.3 0.00029 6.3E-09 65.7 5.0 50 2-55 37-87 (407)
84 COG0622 Predicted phosphoester 97.2 0.022 4.8E-07 46.6 14.7 26 156-181 100-125 (172)
85 PHA02546 47 endonuclease subun 97.1 0.00067 1.4E-08 61.9 5.2 51 2-55 37-89 (340)
86 cd07381 MPP_CapA CapA and rela 97.1 0.0032 7E-08 54.4 8.9 62 114-181 162-223 (239)
87 smart00854 PGA_cap Bacterial c 97.0 0.0049 1.1E-07 53.3 9.2 61 115-181 161-221 (239)
88 PRK09418 bifunctional 2',3'-cy 96.9 0.012 2.6E-07 59.1 12.3 48 126-179 243-291 (780)
89 PRK11907 bifunctional 2',3'-cy 96.8 0.011 2.4E-07 59.5 10.6 47 126-177 308-354 (814)
90 TIGR00024 SbcD_rel_arch putati 96.6 0.0027 5.9E-08 54.4 4.7 46 2-54 56-101 (225)
91 PRK09419 bifunctional 2',3'-cy 96.6 0.011 2.5E-07 62.4 9.7 49 126-179 233-282 (1163)
92 TIGR01390 CycNucDiestase 2',3' 96.4 0.02 4.3E-07 56.6 9.6 47 126-178 194-241 (626)
93 cd07390 MPP_AQ1575 Aquifex aeo 96.3 0.0064 1.4E-07 49.6 4.8 41 4-55 42-82 (168)
94 KOG3325 Membrane coat complex 96.1 0.1 2.2E-06 41.1 10.0 85 156-272 98-182 (183)
95 PRK09420 cpdB bifunctional 2', 96.0 0.051 1.1E-06 53.9 10.1 46 126-177 217-263 (649)
96 PF13277 YmdB: YmdB-like prote 95.7 0.42 9.2E-06 41.3 13.3 149 2-177 25-176 (253)
97 PHA02239 putative protein phos 95.5 0.017 3.7E-07 49.9 4.2 44 5-55 30-73 (235)
98 KOG2863 RNA lariat debranching 95.4 0.089 1.9E-06 47.3 8.2 154 3-176 29-229 (456)
99 PRK00166 apaH diadenosine tetr 95.1 0.032 6.9E-07 49.3 4.5 42 4-55 28-69 (275)
100 COG1407 Predicted ICC-like pho 95.1 0.035 7.6E-07 47.4 4.6 50 2-55 61-110 (235)
101 PF09587 PGA_cap: Bacterial ca 95.0 0.081 1.8E-06 46.0 6.9 64 112-181 169-232 (250)
102 KOG4419 5' nucleotidase [Nucle 95.0 0.14 3.1E-06 49.1 8.7 56 111-177 212-269 (602)
103 cd07413 MPP_PA3087 Pseudomonas 95.0 0.043 9.3E-07 46.9 4.9 44 4-55 33-76 (222)
104 cd07423 MPP_PrpE Bacillus subt 94.8 0.039 8.6E-07 47.5 4.4 43 5-55 38-80 (234)
105 cd07424 MPP_PrpA_PrpB PrpA and 94.7 0.042 9.1E-07 46.4 4.3 40 4-55 28-67 (207)
106 COG5555 Cytolysin, a secreted 94.3 0.064 1.4E-06 46.8 4.3 172 7-179 129-336 (392)
107 PRK13625 bis(5'-nucleosyl)-tet 94.2 0.058 1.3E-06 46.8 4.1 43 5-55 37-79 (245)
108 cd07422 MPP_ApaH Escherichia c 94.0 0.075 1.6E-06 46.5 4.2 42 4-55 26-67 (257)
109 cd00144 MPP_PPP_family phospho 93.7 0.11 2.3E-06 44.2 4.8 44 4-55 24-68 (225)
110 PRK09968 serine/threonine-spec 92.6 0.15 3.2E-06 43.5 3.9 41 3-55 41-81 (218)
111 cd07421 MPP_Rhilphs Rhilph pho 92.6 0.17 3.6E-06 45.0 4.3 43 5-55 35-80 (304)
112 PRK11439 pphA serine/threonine 91.6 0.19 4.1E-06 42.8 3.4 40 4-55 44-83 (218)
113 COG4186 Predicted phosphoester 91.5 0.24 5.1E-06 39.5 3.5 42 130-180 109-150 (186)
114 COG1311 HYS2 Archaeal DNA poly 91.3 0.33 7.2E-06 45.6 4.9 53 3-55 261-321 (481)
115 COG1692 Calcineurin-like phosp 91.1 9.4 0.0002 33.0 15.8 151 2-179 28-182 (266)
116 KOG3947 Phosphoesterases [Gene 90.8 5.8 0.00013 34.8 11.5 47 131-177 215-264 (305)
117 TIGR00668 apaH bis(5'-nucleosy 89.2 0.49 1.1E-05 41.8 4.0 42 4-55 28-69 (279)
118 KOG2310 DNA repair exonuclease 84.4 1.3 2.9E-05 42.2 4.2 20 2-21 50-69 (646)
119 cd07420 MPP_RdgC Drosophila me 82.8 1.7 3.7E-05 39.3 4.1 23 154-176 253-275 (321)
120 cd07416 MPP_PP2B PP2B, metallo 80.3 2.5 5.4E-05 38.0 4.2 23 154-176 222-244 (305)
121 cd07415 MPP_PP2A_PP4_PP6 PP2A, 79.7 2.2 4.8E-05 37.9 3.7 23 154-176 214-236 (285)
122 smart00156 PP2Ac Protein phosp 79.0 3.2 7E-05 36.6 4.5 21 154-174 200-220 (271)
123 PF04042 DNA_pol_E_B: DNA poly 78.7 1.2 2.7E-05 37.3 1.7 55 2-56 29-92 (209)
124 cd07418 MPP_PP7 PP7, metalloph 78.1 3 6.6E-05 38.5 4.2 21 154-174 273-293 (377)
125 cd07419 MPP_Bsu1_C Arabidopsis 77.2 3.2 7E-05 37.3 4.0 21 154-174 242-262 (311)
126 cd07414 MPP_PP1_PPKL PP1, PPKL 76.4 3.6 7.8E-05 36.7 4.1 23 154-176 222-244 (293)
127 PTZ00239 serine/threonine prot 75.0 3.8 8.2E-05 36.8 3.9 23 154-176 215-237 (303)
128 cd07417 MPP_PP5_C PP5, C-termi 74.3 3.7 8E-05 37.1 3.6 23 154-176 233-255 (316)
129 cd07390 MPP_AQ1575 Aquifex aeo 71.6 3.9 8.4E-05 33.1 2.9 34 130-181 108-141 (168)
130 PTZ00480 serine/threonine-prot 71.5 5.9 0.00013 35.8 4.2 23 154-176 231-253 (320)
131 PTZ00244 serine/threonine-prot 67.7 7.1 0.00015 34.9 3.9 23 154-176 224-246 (294)
132 COG4186 Predicted phosphoester 63.3 13 0.00028 29.9 4.1 39 6-54 47-85 (186)
133 TIGR02855 spore_yabG sporulati 56.4 9.3 0.0002 33.5 2.4 25 153-177 141-166 (283)
134 COG2843 PgsA Putative enzyme o 56.1 40 0.00088 31.1 6.6 61 114-181 211-272 (372)
135 PF05582 Peptidase_U57: YabG p 55.1 12 0.00027 32.9 3.0 26 152-177 141-167 (287)
136 PF01784 NIF3: NIF3 (NGG1p int 51.2 20 0.00044 30.9 3.8 43 132-176 56-98 (241)
137 KOG0372 Serine/threonine speci 49.2 20 0.00043 31.1 3.2 40 8-55 73-114 (303)
138 KOG0373 Serine/threonine speci 45.1 29 0.00062 29.6 3.5 40 8-55 76-117 (306)
139 cd07424 MPP_PrpA_PrpB PrpA and 42.9 25 0.00054 29.4 3.0 15 165-179 168-182 (207)
140 PF03808 Glyco_tran_WecB: Glyc 42.7 1.1E+02 0.0025 24.6 6.8 60 95-172 49-108 (172)
141 COG3426 Butyrate kinase [Energ 39.1 31 0.00068 30.6 3.0 42 2-55 294-336 (358)
142 PRK10799 metal-binding protein 38.5 66 0.0014 27.8 5.0 45 132-179 59-103 (247)
143 COG1553 DsrE Uncharacterized c 38.3 1.8E+02 0.004 22.3 7.8 58 113-173 21-80 (126)
144 PHA03008 hypothetical protein; 36.8 72 0.0016 26.6 4.5 43 131-178 163-205 (234)
145 TIGR00486 YbgI_SA1388 dinuclea 36.2 83 0.0018 27.2 5.3 42 132-176 60-101 (249)
146 TIGR03413 GSH_gloB hydroxyacyl 33.8 79 0.0017 27.3 4.8 46 7-54 120-166 (248)
147 KOG0371 Serine/threonine prote 33.7 42 0.00092 29.3 2.9 40 8-55 90-131 (319)
148 PF01764 Lipase_3: Lipase (cla 29.7 62 0.0013 24.6 3.1 23 152-174 49-72 (140)
149 cd06533 Glyco_transf_WecG_TagA 27.9 1.6E+02 0.0035 23.8 5.4 61 94-172 46-106 (171)
150 COG1490 Dtd D-Tyr-tRNAtyr deac 26.5 62 0.0013 25.3 2.5 30 256-285 67-96 (145)
151 PRK00207 sulfur transfer compl 26.3 2.7E+02 0.0058 21.3 6.1 75 97-174 3-81 (128)
152 PRK10241 hydroxyacylglutathion 25.2 1.3E+02 0.0027 26.1 4.5 46 8-55 122-168 (251)
153 TIGR03012 sulf_tusD_dsrE sulfu 25.0 3.2E+02 0.0068 20.9 6.6 59 111-173 18-79 (127)
154 KOG0374 Serine/threonine speci 22.5 40 0.00087 30.7 0.9 27 154-180 233-259 (331)
155 PF06858 NOG1: Nucleolar GTP-b 22.4 2.2E+02 0.0048 18.7 4.1 42 4-49 13-54 (58)
156 PF06874 FBPase_2: Firmicute f 21.7 58 0.0013 32.1 1.9 41 4-55 184-224 (640)
157 PF01012 ETF: Electron transfe 21.5 2.3E+02 0.0051 22.3 5.2 59 113-180 47-105 (164)
No 1
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-56 Score=402.24 Aligned_cols=266 Identities=47% Similarity=0.767 Sum_probs=235.0
Q ss_pred CCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCccCcCCCCccccccccccccccCcCCCCCC
Q 022359 4 GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSS 83 (298)
Q Consensus 4 ~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~ 83 (298)
++|+||++||++|+++..+ .+||+|.+++||+++.+|+|++.||||..+.+.. .|..|..||.||.+...+.
T Consensus 174 k~d~vlhiGDlsYa~~~~n----~~wD~f~r~vEp~As~vPymv~~GNHE~d~~~~~----~F~~y~~Rf~mP~~~s~s~ 245 (452)
T KOG1378|consen 174 KPDAVLHIGDLSYAMGYSN----WQWDEFGRQVEPIASYVPYMVCSGNHEIDWPPQP----CFVPYSARFNMPGNSSESD 245 (452)
T ss_pred CCcEEEEecchhhcCCCCc----cchHHHHhhhhhhhccCceEEecccccccCCCcc----cccccceeeccCCCcCCCC
Confidence 5999999999999998743 6899999999999999999999999999765433 4889999999998877777
Q ss_pred CCceEEEEeCCEEEEEEcCCCCC--CCChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCC-CCCCCh--HHHHHHH
Q 022359 84 SPLWYAIRRASAHIIVLSSYSPF--VKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEA-HFMEGE--SMRAAFE 158 (298)
Q Consensus 84 ~~~~ys~~~g~v~fi~ldt~~~~--~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~-~~~~~~--~~~~~l~ 158 (298)
.+.||||++|++|||+|+|+..+ ....+|++||+++|++++|.++||+||++|+|+|++... +..++. .++..|+
T Consensus 246 ~~l~YSfd~G~vhfv~lsse~~~~~~~~~~QY~WL~~dL~~v~r~~tPWlIv~~HrP~Y~S~~~~~~reG~~~~~~~~LE 325 (452)
T KOG1378|consen 246 SNLYYSFDVGGVHFVVLSTETYYNFLKGTAQYQWLERDLASVDRKKTPWLIVQGHRPMYCSSNDAHYREGEFESMREGLE 325 (452)
T ss_pred CceeEEEeeccEEEEEEeccccccccccchHHHHHHHHHHHhcccCCCeEEEEecccceecCCchhhccCcchhhHHHHH
Confidence 78999999999999999999875 346889999999999998776899999999999998874 455555 6788999
Q ss_pred HHHHHcCccEEEeccccceeeeeeecCceeeccCCccccCCCCCCCEEEEeCCCCCCCCCCCCCCCCCCCCcceeeCccc
Q 022359 159 SWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYG 238 (298)
Q Consensus 159 ~l~~~~~v~lvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~~~G 238 (298)
+||.+++||++|+||.|.|||++|++|.+.....+ +.++.++.+|+||++|.||+.++.. .+..++|+|++++...||
T Consensus 326 ~l~~~~~VDvvf~GHvH~YER~~piyn~~~~~~~~-~~~~~d~~aPvyI~~G~~G~~e~~~-~~~~~~p~~Sa~R~~dfG 403 (452)
T KOG1378|consen 326 PLFVKYKVDVVFWGHVHRYERFCPIYNNTCGTGWG-PVHLVDGMAPIYITVGDGGNHEHLD-PFSSPQPEWSAFREGDFG 403 (452)
T ss_pred HHHHHhceeEEEeccceehhccchhhcceeeccCC-cccccCCCCCEEEEEccCCcccccC-cccCCCCcccccccccCC
Confidence 99999999999999999999999999988766666 7788899999999999999988753 344589999999999999
Q ss_pred EEEEEEecCceEEEEEEEcCCCceeeeeeEEEEecccCCch
Q 022359 239 HSTLEIKNRTHAFYHWNRNDDGKKVATDSFILHNQYWASNR 279 (298)
Q Consensus 239 f~~l~v~~~~~l~~~~~~~~dg~~~~~D~f~i~~~~~~~~~ 279 (298)
|++|++.|+||+.|.++++.|++.++.|+|||.|+...+..
T Consensus 404 ~~~L~v~N~TH~~~~~~~~~d~~g~~~D~fwl~k~~~~~~~ 444 (452)
T KOG1378|consen 404 YTRLTAKNGTHAHVHWVRNSDASGVVIDSFWLIKDYRDMVV 444 (452)
T ss_pred eEEEEEecCceEEEEEEeccCCCceEeeeEEEEcccCcccc
Confidence 99999999999999999887765566799999999887654
No 2
>PLN02533 probable purple acid phosphatase
Probab=100.00 E-value=7.9e-53 Score=390.73 Aligned_cols=259 Identities=43% Similarity=0.770 Sum_probs=218.2
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCccCcCCCCccccccccccccccCcCCCC
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASK 81 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~~ 81 (298)
+.+|||||++||++|.++. ...|+.|.++++++.+.+|+++++||||....+.. ....+..|.++|.||.....
T Consensus 163 ~~~pD~vl~~GDl~y~~~~-----~~~wd~f~~~i~~l~s~~P~m~~~GNHE~~~~~~~-~~~~f~~y~~rf~mP~~~~g 236 (427)
T PLN02533 163 KWDYDVFILPGDLSYANFY-----QPLWDTFGRLVQPLASQRPWMVTHGNHELEKIPIL-HPEKFTAYNARWRMPFEESG 236 (427)
T ss_pred hcCCCEEEEcCccccccch-----HHHHHHHHHHhhhHhhcCceEEeCccccccccccc-cCcCccchhhcccCCccccC
Confidence 4589999999999997653 57899999999999889999999999998643211 12346678899999976544
Q ss_pred CCCCceEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCC--ChHHHHHHHH
Q 022359 82 SSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFME--GESMRAAFES 159 (298)
Q Consensus 82 ~~~~~~ys~~~g~v~fi~ldt~~~~~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~--~~~~~~~l~~ 159 (298)
...+.||||++|++|||+|||+.++....+|++||+++|++++++.++|+||++|+|+|++...+... ...+++.|++
T Consensus 237 ~~~~~yYSfd~g~vhfI~Lds~~~~~~~~~Q~~WLe~dL~~~~r~~~pwiIv~~H~P~y~s~~~~~~~~~~~~~r~~le~ 316 (427)
T PLN02533 237 STSNLYYSFNVYGVHIIMLGSYTDFEPGSEQYQWLENNLKKIDRKTTPWVVAVVHAPWYNSNEAHQGEKESVGMKESMET 316 (427)
T ss_pred CCCCceEEEEECCEEEEEEeCCccccCchHHHHHHHHHHHhhcccCCCEEEEEeCCCeeecccccCCcchhHHHHHHHHH
Confidence 55688999999999999999998877789999999999999877778999999999999876543222 2456889999
Q ss_pred HHHHcCccEEEeccccceeeeeeecCceeeccCCccccCCCCCCCEEEEeCCCCCCCCCCCCCCCCCCCCcceeeCcccE
Q 022359 160 WFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGH 239 (298)
Q Consensus 160 l~~~~~v~lvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf 239 (298)
||.+++||++|+||+|.|+|++|+++.+ + ++.|++||++|+||+.++....+..++|+|++++...|||
T Consensus 317 Ll~~~~VdlvlsGH~H~YeR~~p~~~~~-------~----~~~gpvyiv~G~gG~~e~~~~~~~~~~~~~s~~r~~~~G~ 385 (427)
T PLN02533 317 LLYKARVDLVFAGHVHAYERFDRVYQGK-------T----DKCGPVYITIGDGGNREGLATKYIDPKPDISLFREASFGH 385 (427)
T ss_pred HHHHhCCcEEEecceecccccccccCCc-------c----CCCCCEEEEeCCCccccccccccCCCCCCceeEEeccCCE
Confidence 9999999999999999999999987643 2 4689999999999998875445667889999999999999
Q ss_pred EEEEEecCceEEEEEEEcCCCceeeeeeEEEEecccCC
Q 022359 240 STLEIKNRTHAFYHWNRNDDGKKVATDSFILHNQYWAS 277 (298)
Q Consensus 240 ~~l~v~~~~~l~~~~~~~~dg~~~~~D~f~i~~~~~~~ 277 (298)
++|++.|.|+|.|+|+++.|++.++.|+|||.|....+
T Consensus 386 ~~l~v~n~t~l~~~~~~~~~~~~~~~D~~~i~~~~~~~ 423 (427)
T PLN02533 386 GQLNVVDANTMEWTWHRNDDDQSVASDSVWLKSLLTEP 423 (427)
T ss_pred EEEEEEcCCeEEEEEEecCCCCceeeeEEEEEeccCCC
Confidence 99999999999999999888855568999999876543
No 3
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=100.00 E-value=8.8e-47 Score=337.01 Aligned_cols=258 Identities=45% Similarity=0.810 Sum_probs=200.6
Q ss_pred CCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCccCcCCCCccccccccccccccCcCCCCC
Q 022359 3 SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKS 82 (298)
Q Consensus 3 ~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~~~ 82 (298)
.+|||||++||++|..+..+ ..+|+.|++.++++...+|+++++||||......... ...+..++.++......
T Consensus 32 ~~~d~vl~~GDl~~~~~~~~---~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~~~~~~~~---~~~~~~~~~~~~~~~~~ 105 (294)
T cd00839 32 GNYDAILHVGDLAYADGYNN---GSRWDTFMRQIEPLASYVPYMVTPGNHEADYNFSFYK---IKAFFPRFRFPHSPSGS 105 (294)
T ss_pred CCccEEEEcCchhhhcCCcc---chhHHHHHHHHHHHHhcCCcEEcCcccccccCCCCcc---cccccccccccCCCCCC
Confidence 68999999999998866422 3679999999999988999999999999864321110 11111122333333334
Q ss_pred CCCceEEEEeCCEEEEEEcCCCCC---CCChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCC--CChHHHHHH
Q 022359 83 SSPLWYAIRRASAHIIVLSSYSPF---VKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFM--EGESMRAAF 157 (298)
Q Consensus 83 ~~~~~ys~~~g~v~fi~ldt~~~~---~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~--~~~~~~~~l 157 (298)
..+.||+|++|++|||+|||+... ....+|++||+++|+++++.+.+|+||++|+|+++....... .....++.|
T Consensus 106 ~~~~~Ysf~~g~v~fi~Lds~~~~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l 185 (294)
T cd00839 106 TSNLWYSFDVGPVHFVSLSTEVDFYGDGPGSPQYDWLEADLAKVDRSKTPWIIVMGHRPMYCSNTDHDDCIEGEKMRAAL 185 (294)
T ss_pred CCCceEEEeeCCEEEEEEecccccccCCCCcHHHHHHHHHHHHhcccCCCeEEEEeccCcEecCccccccchhHHHHHHH
Confidence 567899999999999999998764 456899999999999875555689999999999987654321 235678899
Q ss_pred HHHHHHcCccEEEeccccceeeeeeecCceeeccCCccccCCCCCCCEEEEeCCCCCCCCCCCCCCCCCCCCcceeeCcc
Q 022359 158 ESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASY 237 (298)
Q Consensus 158 ~~l~~~~~v~lvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~~~ 237 (298)
.+||++++|+++|+||+|.|+|++|+++.+.. +.+..+.+++|++||++|+||+..+.... ..+.|+|++++...+
T Consensus 186 ~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~---~~~~~~~~~~g~~yiv~G~~G~~~~~~~~-~~~~~~~~~~~~~~~ 261 (294)
T cd00839 186 EDLFYKYGVDLVLSGHVHAYERTCPVYNGTVV---GDCNPYSNPKGPVHIVIGAGGNDEGLDPF-SAPPPAWSAFRESDY 261 (294)
T ss_pred HHHHHHhCCCEEEEccceeeEeechhhCCEec---cccccccCCCccEEEEECCCccccCcCcc-cCCCCCceEEEeccC
Confidence 99999999999999999999999998765421 33444567899999999999998764211 123357888888899
Q ss_pred cEEEEEEecCceEEEEEEEcCCCceeeeeeEEEEe
Q 022359 238 GHSTLEIKNRTHAFYHWNRNDDGKKVATDSFILHN 272 (298)
Q Consensus 238 Gf~~l~v~~~~~l~~~~~~~~dg~~~~~D~f~i~~ 272 (298)
||++|++.++|+|.++|+.+.+|+++ |+|+|.|
T Consensus 262 g~~~~~~~~~t~l~~~~~~~~~g~v~--D~f~i~k 294 (294)
T cd00839 262 GFGRLTVHNSTHLHFEWIRNDDGVVI--DSFWIIK 294 (294)
T ss_pred CEEEEEEEecCeEEEEEEECCCCeEE--EEEEEeC
Confidence 99999999888999999998899876 9999986
No 4
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=100.00 E-value=1.6e-36 Score=273.75 Aligned_cols=233 Identities=14% Similarity=0.228 Sum_probs=174.0
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHH-HHHHHHHhc--CCCceEEccCCCCccCcCCCCccc--------------
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDS-WGRFVERSA--AYQPWIWSAGNHEIEYMTYMGEVV-------------- 64 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~-~~~~~~~~~--~~~P~~~v~GNHD~~~~~~~~~~~-------------- 64 (298)
+.++||||.+||++ .+|..+.+ +.+|.+ |.+.+.... ..+||++|+||||+..+...+-..
T Consensus 55 ~~~~~FVls~GDNF-~~Gv~sv~-Dp~f~~~FE~vY~~~s~~L~~Pwy~vLGNHDy~Gn~~AQi~r~~~~y~~~~~~~~~ 132 (394)
T PTZ00422 55 NERVTFLVSPGSNF-PGGVDGLN-DPKWKHCFENVYSEESGDMQIPFFTVLGQADWDGNYNAELLKGQNVYLNGHGQTDI 132 (394)
T ss_pred hCCCCEEEECCccc-cCCCCCcc-chhHHhhHhhhccCcchhhCCCeEEeCCcccccCCchhhhcccccccccccccccc
Confidence 46899999999998 56666555 677754 666676554 578999999999996443221100
Q ss_pred ccc---ccccccccCcCCCCCCCCceEEE----Ee-------------CCEEEEEEcCCCC-----CC-CChHHHHHHHH
Q 022359 65 PFK---SYLHRYPTPHLASKSSSPLWYAI----RR-------------ASAHIIVLSSYSP-----FV-KYTPQWEWLRE 118 (298)
Q Consensus 65 ~~~---~~~~~f~~p~~~~~~~~~~~ys~----~~-------------g~v~fi~ldt~~~-----~~-~~~~Q~~wL~~ 118 (298)
.|. .-..||.||. .||.+ .. ..+.||+|||..- +. ....|++||++
T Consensus 133 ~y~~~~~~~~RW~mP~--------~yY~~~~~f~~~~~~~~~~~~~~~~~v~fifiDT~~l~~~~~~~~~~~~~w~~L~~ 204 (394)
T PTZ00422 133 EYDSNNDIYPKWIMPN--------YWYHYFTHFTDTSGPSLLKSGHKDMSVAFIFIDTWILSSSFPYKKVSERAWQDLKA 204 (394)
T ss_pred ccccccccCCCccCCc--------hhheeeeeeecccccccccccCCCCEEEEEEEECchhcccCCccccCHHHHHHHHH
Confidence 000 1136888984 57754 21 1289999999632 22 24678999999
Q ss_pred HHhhcccCCCCeEEEEeecccccCCCCCCCCChHHHHHHHHHHHHcCccEEEeccccceeeeeeecCceeeccCCccccC
Q 022359 119 ELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPV 198 (298)
Q Consensus 119 ~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~ 198 (298)
+|+.+ ++..+|+||++|||+|+++.++ +...+++.|+|||++|+||++||||+|++|+..
T Consensus 205 ~L~~a-~k~a~WkIVvGHhPIySsG~hg--~~~~L~~~L~PLL~ky~VdlYisGHDH~lq~i~----------------- 264 (394)
T PTZ00422 205 TLEYA-PKIADYIIVVGDKPIYSSGSSK--GDSYLSYYLLPLLKDAQVDLYISGYDRNMEVLT----------------- 264 (394)
T ss_pred HHHhh-ccCCCeEEEEecCceeecCCCC--CCHHHHHHHHHHHHHcCcCEEEEccccceEEec-----------------
Confidence 99754 3456899999999999988643 456789999999999999999999999999985
Q ss_pred CCCCCCEEEEeCCCCCCCCCCCCCCCCCCCCcceeeCcccEEEEEEecCceEEEEEEEcCCCceeeeeeEEEEec
Q 022359 199 PDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWNRNDDGKKVATDSFILHNQ 273 (298)
Q Consensus 199 ~~~~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~~~~l~~~~~~~~dg~~~~~D~f~i~~~ 273 (298)
.+++.||++|+||+..+. . . ..++++.|....+||+.+++ +...+.++|+.+.+|+++ +++++.+.
T Consensus 265 --~~gt~yIvSGaGs~~~~~--~-~-~~~~~s~F~~~~~GF~~~~l-~~~~l~~~fid~~~GkvL--~~~~~~~~ 330 (394)
T PTZ00422 265 --DEGTAHINCGSGGNSGRK--S-I-MKNSKSLFYSEDIGFCIHEL-NAEGMVTKFVSGNTGEVL--YTHKQPLK 330 (394)
T ss_pred --CCCceEEEeCccccccCC--C-C-CCCCCcceecCCCCEEEEEE-ecCEEEEEEEeCCCCcEE--EEeeeccc
Confidence 257889999999986542 1 1 22347888888899999999 567799999876789986 88888643
No 5
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=100.00 E-value=1.4e-33 Score=249.76 Aligned_cols=220 Identities=21% Similarity=0.377 Sum_probs=159.5
Q ss_pred CCCcEEEEcCcccccCCCcccccchhH-HHHHHHHHHhcCCCceEEccCCCCccCcCCCCccccccc--cccccccCcCC
Q 022359 3 SGAQTVLFLGDLSYADRYQFIDVGVRW-DSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKS--YLHRYPTPHLA 79 (298)
Q Consensus 3 ~~pd~vl~~GD~~y~~~~~~~~~~~~~-~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~--~~~~f~~p~~~ 79 (298)
.+|||||++||++|.++....+ ...| +.|.+.++.+...+|+++++||||+.... ..+..+.. +..+|.+|
T Consensus 31 ~~~dfvv~~GD~~y~~g~~~~~-~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~--~~~~~~~~~~~~~~~~~~--- 104 (277)
T cd07378 31 LGPDFILSLGDNFYDDGVGSVD-DPRFETTFEDVYSAPSLQVPWYLVLGNHDYSGNV--SAQIDYTKRPNSPRWTMP--- 104 (277)
T ss_pred cCCCEEEeCCCccccCCCCCCc-chHHHHHHHHHccchhhcCCeEEecCCcccCCCc--hheeehhccCCCCCccCc---
Confidence 6899999999999988754332 3344 34556655555678999999999985321 11111111 13344444
Q ss_pred CCCCCCceEEEEeC------CEEEEEEcCCCCC---------------CCChHHHHHHHHHHhhcccCCCCeEEEEeecc
Q 022359 80 SKSSSPLWYAIRRA------SAHIIVLSSYSPF---------------VKYTPQWEWLREELKKVDREKTPWLIVLMHVP 138 (298)
Q Consensus 80 ~~~~~~~~ys~~~g------~v~fi~ldt~~~~---------------~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P 138 (298)
..||+|+++ +++||+|||.... ....+|++||+++|+++ ..+|+||++|||
T Consensus 105 -----~~~y~~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~~~~Q~~wL~~~L~~~---~~~~~iv~~H~P 176 (277)
T cd07378 105 -----AYYYRVSFPFPSSDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKLAEEQLAWLEKTLAAS---TADWKIVVGHHP 176 (277)
T ss_pred -----chheEEEeecCCCCCEEEEEEEeChhHcCccccccccccCcchhhHHHHHHHHHHHHHhc---CCCeEEEEeCcc
Confidence 468999987 7999999997431 12478999999999985 237999999999
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHcCccEEEeccccceeeeeeecCceeeccCCccccCCCCCCCEEEEeCCCCCCCCC
Q 022359 139 IYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGL 218 (298)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~g~~~iv~G~gG~~~~~ 218 (298)
+++..... .....++.|.+++++++|+++|+||+|.+++..+ ...++.||++|+||...+.
T Consensus 177 ~~~~~~~~--~~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~~-----------------~~~~~~~i~~G~~~~~~~~ 237 (277)
T cd07378 177 IYSSGEHG--PTSCLVDRLLPLLKKYKVDAYLSGHDHNLQHIKD-----------------DGSGTSFVVSGAGSKARPS 237 (277)
T ss_pred ceeCCCCC--CcHHHHHHHHHHHHHcCCCEEEeCCcccceeeec-----------------CCCCcEEEEeCCCcccCCC
Confidence 99865432 2256788999999999999999999999999863 1258899999999987654
Q ss_pred CCCCCCCCCCCcceeeCcccEEEEEEecCceEEEEEEE
Q 022359 219 AGKFRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWNR 256 (298)
Q Consensus 219 ~~~~~~~~p~~~~~~~~~~Gf~~l~v~~~~~l~~~~~~ 256 (298)
........|.|..++...+||++|+|.+ ..+.++|+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~Gy~~i~v~~-~~l~~~~~~ 274 (277)
T cd07378 238 VKHIDKVPQFFSGFTSSGGGFAYLELTK-EELTVRFYD 274 (277)
T ss_pred CCccCcccccccccccCCCCEEEEEEec-CEEEEEEEC
Confidence 2222222234677777889999999964 578999874
No 6
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.5e-30 Score=216.02 Aligned_cols=235 Identities=18% Similarity=0.260 Sum_probs=160.2
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhH-HHHHHHHHHhcCCCceEEccCCCCccCcCCCCccccccccccccccCcCCC
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRW-DSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLAS 80 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~-~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~ 80 (298)
+.+.||||.+||++|.+|..+.. +.++ +.|.+.+..-..+.|||.++||||+..+-..+-...+.....||..|..
T Consensus 73 ~l~idfvlS~GDNfYd~G~~~~~-Dp~Fq~sF~nIYT~pSLQkpWy~vlGNHDyrGnV~AQls~~l~~~d~RW~c~rs-- 149 (336)
T KOG2679|consen 73 KLDIDFVLSTGDNFYDTGLTSEN-DPRFQDSFENIYTAPSLQKPWYSVLGNHDYRGNVEAQLSPVLRKIDKRWICPRS-- 149 (336)
T ss_pred hccceEEEecCCcccccCCCCCC-ChhHHhhhhhcccCcccccchhhhccCccccCchhhhhhHHHHhhccceecccH--
Confidence 46899999999999999886544 4444 3455555544446799999999999754332222224555677877642
Q ss_pred CCCCCceEE----EEe--CCEEEEEEcCCC-------CCC-------CChHHHHHHHHHHhhcccCCCCeEEEEeecccc
Q 022359 81 KSSSPLWYA----IRR--ASAHIIVLSSYS-------PFV-------KYTPQWEWLREELKKVDREKTPWLIVLMHVPIY 140 (298)
Q Consensus 81 ~~~~~~~ys----~~~--g~v~fi~ldt~~-------~~~-------~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~ 140 (298)
||. .+. -++.+.++|+.. +|. ....++.||+..|++ +.++|+||++|||+.
T Consensus 150 ------f~~~ae~ve~f~v~~~~f~~d~~~~~~~~~ydw~~v~PR~~~~~~~l~~le~~L~~---S~a~wkiVvGHh~i~ 220 (336)
T KOG2679|consen 150 ------FYVDAEIVEMFFVDTTPFMDDTFTLCTDDVYDWRGVLPRVKYLRALLSWLEVALKA---SRAKWKIVVGHHPIK 220 (336)
T ss_pred ------HhhcceeeeeeccccccchhhheecccccccccccCChHHHHHHHHHHHHHHHHHH---hhcceEEEeccccee
Confidence 221 011 123444444321 111 135689999999998 567899999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHcCccEEEeccccceeeeeeecCceeeccCCccccCCCCCCCEEEEeCCCCCCCCCCC
Q 022359 141 NSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAG 220 (298)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~g~~~iv~G~gG~~~~~~~ 220 (298)
+.+.+ +...++.++|.||+++++||++++||+|++|..... .+++-|+++|+|.+.-...+
T Consensus 221 S~~~H--G~T~eL~~~LlPiL~~n~VdlY~nGHDHcLQhis~~-----------------e~~iqf~tSGagSkaw~g~~ 281 (336)
T KOG2679|consen 221 SAGHH--GPTKELEKQLLPILEANGVDLYINGHDHCLQHISSP-----------------ESGIQFVTSGAGSKAWRGTD 281 (336)
T ss_pred hhhcc--CChHHHHHHHHHHHHhcCCcEEEecchhhhhhccCC-----------------CCCeeEEeeCCcccccCCCc
Confidence 98764 356788999999999999999999999999998521 35666888887766543211
Q ss_pred CCCCCCCCCcceeeCcccEEEEEEecCceEEEEEEEcCCCceeeeeeEEEE
Q 022359 221 KFRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWNRNDDGKKVATDSFILH 271 (298)
Q Consensus 221 ~~~~~~p~~~~~~~~~~Gf~~l~v~~~~~l~~~~~~~~dg~~~~~D~f~i~ 271 (298)
-..+..|+...|.....||+.+++ ....+++.|+.. -|+++ .+....
T Consensus 282 ~~~~~~p~~lkF~YdgqGfmsv~i-s~~e~~vvfyD~-~G~~L--hk~~t~ 328 (336)
T KOG2679|consen 282 HNPEVNPKELKFYYDGQGFMSVEI-SHSEARVVFYDV-SGKVL--HKWSTS 328 (336)
T ss_pred cCCccChhheEEeeCCCceEEEEE-ecceeEEEEEec-cCceE--EEeecc
Confidence 111234555667777789999999 466688888754 58875 444433
No 7
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.96 E-value=1.8e-27 Score=209.15 Aligned_cols=203 Identities=19% Similarity=0.232 Sum_probs=142.1
Q ss_pred CCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCccCcCCCCccccccccccccccCcCCCCC
Q 022359 3 SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKS 82 (298)
Q Consensus 3 ~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~~~ 82 (298)
.+||+||++||+++....... ...+|+.+.+.++.+...+|+++++||||....+. ...+..|...|.
T Consensus 48 ~~pd~ii~~GDl~~~~~~~~~-~~~~~~~~~~~~~~~~~~vp~~~i~GNHD~~~~~~---~~~~~~f~~~~g-------- 115 (262)
T cd07395 48 PKPKFVVVCGDLVNAMPGDEL-RERQVSDLKDVLSLLDPDIPLVCVCGNHDVGNTPT---EESIKDYRDVFG-------- 115 (262)
T ss_pred CCCCEEEEeCCcCCCCcchhh-HHHHHHHHHHHHhhccCCCcEEEeCCCCCCCCCCC---hhHHHHHHHHhC--------
Confidence 389999999999976433211 12345666677776656789999999999843211 111222322221
Q ss_pred CCCceEEEEeCCEEEEEEcCCCCC------CCChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCC----CCChH
Q 022359 83 SSPLWYAIRRASAHIIVLSSYSPF------VKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHF----MEGES 152 (298)
Q Consensus 83 ~~~~~ys~~~g~v~fi~ldt~~~~------~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~----~~~~~ 152 (298)
..||++++++++||+|||.... ....+|++||+++|+++++.+.+++||++|+|++....... .....
T Consensus 116 --~~~y~~~~~~~~~i~lds~~~~~~~~~~~~~~~ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~ 193 (262)
T cd07395 116 --DDYFSFWVGGVFFIVLNSQLFFDPSEVPELAQAQDVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDEEDSYFNIPKS 193 (262)
T ss_pred --CcceEEEECCEEEEEeccccccCccccccchHHHHHHHHHHHHHHHhccCCcEEEEECcCCccCCCCCCcccCCcCHH
Confidence 3578999999999999996432 12478999999999986433556899999999986443211 12245
Q ss_pred HHHHHHHHHHHcCccEEEeccccceeeeeeecCceeeccCCccccCCCCCCCEEEEeCCCCCCCCCCCCCCCCCCCCcce
Q 022359 153 MRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAF 232 (298)
Q Consensus 153 ~~~~l~~l~~~~~v~lvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~ 232 (298)
.++++.++|++++|+++||||+|...+.. .+|+.+++++++|....
T Consensus 194 ~~~~l~~ll~~~~V~~v~~GH~H~~~~~~-------------------~~g~~~~~~~~~~~~~~--------------- 239 (262)
T cd07395 194 VRKPLLDKFKKAGVKAVFSGHYHRNAGGR-------------------YGGLEMVVTSAIGAQLG--------------- 239 (262)
T ss_pred HHHHHHHHHHhcCceEEEECccccCCceE-------------------ECCEEEEEcCceecccC---------------
Confidence 67899999999999999999999987643 24677888888776421
Q ss_pred eeCcccEEEEEEecCceEEEEEE
Q 022359 233 REASYGHSTLEIKNRTHAFYHWN 255 (298)
Q Consensus 233 ~~~~~Gf~~l~v~~~~~l~~~~~ 255 (298)
...+||..++++.+ .++++|+
T Consensus 240 -~~~~g~~~~~v~~~-~~~~~~~ 260 (262)
T cd07395 240 -NDKSGLRIVKVTED-KIVHEYY 260 (262)
T ss_pred -CCCCCcEEEEECCC-ceeeeee
Confidence 12479999999644 4678775
No 8
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.91 E-value=9.6e-24 Score=182.89 Aligned_cols=194 Identities=20% Similarity=0.233 Sum_probs=132.7
Q ss_pred CCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCccCcCCCCccccccccccccccCcCCCCC
Q 022359 3 SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKS 82 (298)
Q Consensus 3 ~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~~~ 82 (298)
.+||+||++||++.... ...|+.+.+.++.+ .+|++.++||||... .+...|..... .
T Consensus 39 ~~~d~vi~~GDl~~~~~------~~~~~~~~~~l~~~--~~p~~~v~GNHD~~~-----------~~~~~~~~~~~---~ 96 (240)
T cd07402 39 PRPDLVLVTGDLTDDGS------PESYERLRELLAAL--PIPVYLLPGNHDDRA-----------AMRAVFPELPP---A 96 (240)
T ss_pred CCCCEEEECccCCCCCC------HHHHHHHHHHHhhc--CCCEEEeCCCCCCHH-----------HHHHhhccccc---c
Confidence 38999999999996532 23455566666554 789999999999731 11111111000 1
Q ss_pred CCCceEEEEeCCEEEEEEcCCCCCC----CChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCC-CChHHHHHH
Q 022359 83 SSPLWYAIRRASAHIIVLSSYSPFV----KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFM-EGESMRAAF 157 (298)
Q Consensus 83 ~~~~~ys~~~g~v~fi~ldt~~~~~----~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~-~~~~~~~~l 157 (298)
....+|+|+.++++||+||+..... ..++|++||++.|+++. .+++|+++|+|++........ .....++++
T Consensus 97 ~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~ql~wL~~~L~~~~---~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~ 173 (240)
T cd07402 97 PGFVQYVVDLGGWRLILLDSSVPGQHGGELCAAQLDWLEAALAEAP---DKPTLVFLHHPPFPVGIAWMDAIGLRNAEAL 173 (240)
T ss_pred ccccceeEecCCEEEEEEeCCCCCCcCCEECHHHHHHHHHHHHhCC---CCCEEEEECCCCccCCchhhhhhhCCCHHHH
Confidence 2346789999999999999965321 35789999999999852 457889999998765431100 111226788
Q ss_pred HHHHHHc-CccEEEeccccceeeeeeecCceeeccCCccccCCCCCCCEEEEeCCCCCCCCCCCCCCCCCCCCcceeeCc
Q 022359 158 ESWFVRY-KVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREAS 236 (298)
Q Consensus 158 ~~l~~~~-~v~lvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~~ 236 (298)
.+++.++ +++++|+||.|...... .+|+.++++|+.|.... +.++..++....
T Consensus 174 ~~~l~~~~~v~~v~~GH~H~~~~~~-------------------~~g~~~~~~gs~~~~~~-------~~~~~~~~~~~~ 227 (240)
T cd07402 174 AAVLARHPNVRAILCGHVHRPIDGS-------------------WGGIPLLTAPSTCHQFA-------PDLDDFALDALA 227 (240)
T ss_pred HHHHhcCCCeeEEEECCcCchHHeE-------------------ECCEEEEEcCcceeeec-------CCCCcccccccC
Confidence 9999999 99999999999976653 25678999999887542 122334444557
Q ss_pred ccEEEEEEecC
Q 022359 237 YGHSTLEIKNR 247 (298)
Q Consensus 237 ~Gf~~l~v~~~ 247 (298)
+||..+++.++
T Consensus 228 ~~~~~~~~~~~ 238 (240)
T cd07402 228 PGYRALSLHED 238 (240)
T ss_pred CCCcEEEEecC
Confidence 89998887543
No 9
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.89 E-value=2.3e-22 Score=177.06 Aligned_cols=174 Identities=20% Similarity=0.230 Sum_probs=116.7
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCccCcCCCCccccccccccccccCcCCCC
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASK 81 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~~ 81 (298)
+.+||+||++||+++..... . ...|+.+.+.++.+ .+|+++++||||..... . ..+...+ . .
T Consensus 38 ~~~~d~vv~~GDlv~~~~~~--~-~~~~~~~~~~l~~l--~~p~~~v~GNHD~~~~~--~-----~~~~~~~--~----~ 99 (267)
T cd07396 38 RESLDFVVQLGDIIDGDNAR--A-EEALDAVLAILDRL--KGPVHHVLGNHDLYNPS--R-----EYLLLYT--L----L 99 (267)
T ss_pred cCCCCEEEECCCeecCCCch--H-HHHHHHHHHHHHhc--CCCEEEecCcccccccc--H-----hhhhccc--c----c
Confidence 35699999999999643211 0 23444444444443 58999999999985211 0 0000000 0 1
Q ss_pred CCCCceEEEEeCCEEEEEEcCCCC--------------------------------C--CCChHHHHHHHHHHhhcccCC
Q 022359 82 SSSPLWYAIRRASAHIIVLSSYSP--------------------------------F--VKYTPQWEWLREELKKVDREK 127 (298)
Q Consensus 82 ~~~~~~ys~~~g~v~fi~ldt~~~--------------------------------~--~~~~~Q~~wL~~~L~~~~~~~ 127 (298)
..+..||+|+.++++||+|||... + ...++|++||+++|+++. .+
T Consensus 100 ~~~~~yysf~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~-~~ 178 (267)
T cd07396 100 GLGAPYYSFSPGGIRFIVLDGYDISALGRPEDTPKAENADDNSNLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEAD-AN 178 (267)
T ss_pred CCCCceEEEecCCcEEEEEeCCccccccCCCCChhhhhHHHhchhhhhccCccceeccCcCCHHHHHHHHHHHHHHH-hc
Confidence 233568999999999999999531 0 124789999999999863 23
Q ss_pred CCeEEEEeecccccCCCCCCCCChHHHHHHHHHHHHc-CccEEEeccccceeeeeeecCceeeccCCccccCCCCCCCEE
Q 022359 128 TPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRY-KVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVY 206 (298)
Q Consensus 128 ~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~v~lvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~g~~~ 206 (298)
..++||++|+|++...... .....-++.+.+++.++ +|+++|+||+|.+.... .+|+.|
T Consensus 179 ~~~viV~~Hhp~~~~~~~~-~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~-------------------~~gi~~ 238 (267)
T cd07396 179 GEKVIIFSHFPLHPESTSP-HGLLWNHEEVLSILRAYGCVKACISGHDHEGGYAQ-------------------RHGIHF 238 (267)
T ss_pred CCeEEEEEeccCCCCCCCc-cccccCHHHHHHHHHhCCCEEEEEcCCcCCCCccc-------------------cCCeeE
Confidence 4578999999997654311 11111256788999995 89999999999997543 367889
Q ss_pred EEeCCCCC
Q 022359 207 ITVGDGGN 214 (298)
Q Consensus 207 iv~G~gG~ 214 (298)
+++|+-..
T Consensus 239 ~~~~a~~~ 246 (267)
T cd07396 239 LTLEGMVE 246 (267)
T ss_pred EEechhhc
Confidence 99987544
No 10
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.88 E-value=8.2e-22 Score=172.32 Aligned_cols=168 Identities=16% Similarity=0.219 Sum_probs=110.2
Q ss_pred CCCCcEEEEcCcccccCCCc---ccccchhHHHHHHHHHHhcC--CCceEEccCCCCccCcCCCCcc-cccccccccccc
Q 022359 2 ESGAQTVLFLGDLSYADRYQ---FIDVGVRWDSWGRFVERSAA--YQPWIWSAGNHEIEYMTYMGEV-VPFKSYLHRYPT 75 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~---~~~~~~~~~~~~~~~~~~~~--~~P~~~v~GNHD~~~~~~~~~~-~~~~~~~~~f~~ 75 (298)
+.+||+||++||++...... ......+|+.|.+.+..... ..|++.++||||.......... ..|..|...+..
T Consensus 31 ~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~y~~~~~~ 110 (256)
T cd07401 31 VIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKWFDIRGNHDLFNIPSLDSENNYYRKYSATGRD 110 (256)
T ss_pred hhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceEEEeCCCCCcCCCCCccchhhHHHHhheecCC
Confidence 46899999999999543211 11124567777777665433 5899999999999522211111 111222221111
Q ss_pred CcCCCCCCCCceEEE--EeCCEEEEEEcCCCC----------CCCChHHHHHHHHHHhhcccCCCCeEEEEeecccccCC
Q 022359 76 PHLASKSSSPLWYAI--RRASAHIIVLSSYSP----------FVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSN 143 (298)
Q Consensus 76 p~~~~~~~~~~~ys~--~~g~v~fi~ldt~~~----------~~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~ 143 (298)
...+|.+ ..++++||+|||... ....++|++||+++|+++ .+.+++||++|+|+....
T Consensus 111 --------~~~~~~~~~~~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql~wL~~~L~~~--~~~~~~IV~~HhP~~~~~ 180 (256)
T cd07401 111 --------GSFSFSHTTRFGNYSFIGVDPTLFPGPKRPFNFFGSLDKKLLDRLEKELEKS--TNSNYTIWFGHYPTSTII 180 (256)
T ss_pred --------CccceEEEecCCCEEEEEEcCccCCCCCCCCceeccCCHHHHHHHHHHHHhc--ccCCeEEEEEcccchhcc
Confidence 1223333 348999999999642 123489999999999985 344689999999996533
Q ss_pred CCCCCCChHHHHHHHHHHHHcCccEEEeccccceeeeeee
Q 022359 144 EAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRI 183 (298)
Q Consensus 144 ~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~~~ 183 (298)
... .. ....+.+++++++|+++||||.|.+++..|+
T Consensus 181 ~~~---~~-~~~~~~~ll~~~~v~~vl~GH~H~~~~~~p~ 216 (256)
T cd07401 181 SPS---AK-SSSKFKDLLKKYNVTAYLCGHLHPLGGLEPV 216 (256)
T ss_pred CCC---cc-hhHHHHHHHHhcCCcEEEeCCccCCCcceee
Confidence 211 11 2223899999999999999999999997775
No 11
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.88 E-value=4.7e-21 Score=169.49 Aligned_cols=202 Identities=16% Similarity=0.177 Sum_probs=121.4
Q ss_pred CCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCccCcCCCCccccccccccccccCcCCCCC
Q 022359 3 SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKS 82 (298)
Q Consensus 3 ~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~~~ 82 (298)
.+||+||++||++.... ...+..+.+.++.+ .+|+++++||||.... +..+.....++
T Consensus 54 ~~~D~vvitGDl~~~~~------~~~~~~~~~~l~~l--~~Pv~~v~GNHD~~~~--------~~~~~~~~~~~------ 111 (275)
T PRK11148 54 HEFDLIVATGDLAQDHS------SEAYQHFAEGIAPL--RKPCVWLPGNHDFQPA--------MYSALQDAGIS------ 111 (275)
T ss_pred CCCCEEEECCCCCCCCC------HHHHHHHHHHHhhc--CCcEEEeCCCCCChHH--------HHHHHhhcCCC------
Confidence 46999999999995321 23445555555544 5899999999997311 11111111111
Q ss_pred CCCceEEEEeCCEEEEEEcCCCCC----CCChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCC-CCCChHHHHHH
Q 022359 83 SSPLWYAIRRASAHIIVLSSYSPF----VKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAH-FMEGESMRAAF 157 (298)
Q Consensus 83 ~~~~~ys~~~g~v~fi~ldt~~~~----~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~-~~~~~~~~~~l 157 (298)
..++.+..++++||+|||.... ....+|++||+++|+++ .+ +.+||++||||...+... ......-.+++
T Consensus 112 --~~~~~~~~~~~~~i~Lds~~~g~~~G~l~~~ql~wL~~~L~~~--~~-~~~vv~~hH~P~~~~~~~~d~~~l~n~~~l 186 (275)
T PRK11148 112 --PAKHVLIGEHWQILLLDSQVFGVPHGELSEYQLEWLERKLADA--PE-RHTLVLLHHHPLPAGCAWLDQHSLRNAHEL 186 (275)
T ss_pred --ccceEEecCCEEEEEecCCCCCCcCCEeCHHHHHHHHHHHhhC--CC-CCeEEEEcCCCCCCCcchhhccCCCCHHHH
Confidence 1223344467999999996532 12578999999999985 22 344555555443322211 00111124689
Q ss_pred HHHHHHc-CccEEEeccccceeeeeeecCceeeccCCccccCCCCCCCEEEEeCCCCCCCCCCCCCCCCCCCCcceeeCc
Q 022359 158 ESWFVRY-KVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREAS 236 (298)
Q Consensus 158 ~~l~~~~-~v~lvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~~ 236 (298)
.++++++ +|+++|+||+|...... .+|+.++++++.+..... ..+.+ ......
T Consensus 187 ~~ll~~~~~v~~vl~GH~H~~~~~~-------------------~~gi~~~~~ps~~~q~~~------~~~~~-~~~~~~ 240 (275)
T PRK11148 187 AEVLAKFPNVKAILCGHIHQELDLD-------------------WNGRRLLATPSTCVQFKP------HCTNF-TLDTVA 240 (275)
T ss_pred HHHHhcCCCceEEEecccChHHhce-------------------ECCEEEEEcCCCcCCcCC------CCCcc-ccccCC
Confidence 9999998 89999999999864432 256778888776653211 01111 122334
Q ss_pred ccEEEEEEecCceEEEEEEEc
Q 022359 237 YGHSTLEIKNRTHAFYHWNRN 257 (298)
Q Consensus 237 ~Gf~~l~v~~~~~l~~~~~~~ 257 (298)
+||..+++..++.+..+..+-
T Consensus 241 ~g~~~~~l~~~g~~~~~~~~~ 261 (275)
T PRK11148 241 PGWRELELHADGSLETEVHRL 261 (275)
T ss_pred CcEEEEEEcCCCcEEEEEEEc
Confidence 799999997666665555443
No 12
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.83 E-value=3.1e-20 Score=166.01 Aligned_cols=175 Identities=17% Similarity=0.236 Sum_probs=114.5
Q ss_pred CCCcEEEEcCcccccCCCcccccch---hHHHHHHHHHHhcCCCceEEccCCCCccCcCCCC----ccccccccccccc-
Q 022359 3 SGAQTVLFLGDLSYADRYQFIDVGV---RWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMG----EVVPFKSYLHRYP- 74 (298)
Q Consensus 3 ~~pd~vl~~GD~~y~~~~~~~~~~~---~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~----~~~~~~~~~~~f~- 74 (298)
.+|||||++||++..+......... .+..+.+.++.....+|+++++||||........ ....+..+...|.
T Consensus 67 ~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~~~~~~~~~~~~~~~~~~~~w~~ 146 (296)
T cd00842 67 PKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPVNQFPPNNSPSWLYDALAELWKS 146 (296)
T ss_pred CCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCcccccCCcccccHHHHHHHHHHHh
Confidence 3799999999999776542211001 2344555566666789999999999985221111 0111111222221
Q ss_pred -cCcCC-CCCCCCceEEEE-eCCEEEEEEcCCCCC-----------CCChHHHHHHHHHHhhcccCCCCeEEEEeecccc
Q 022359 75 -TPHLA-SKSSSPLWYAIR-RASAHIIVLSSYSPF-----------VKYTPQWEWLREELKKVDREKTPWLIVLMHVPIY 140 (298)
Q Consensus 75 -~p~~~-~~~~~~~~ys~~-~g~v~fi~ldt~~~~-----------~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~ 140 (298)
+|... .....+.||++. .++++||+|||.... .....|++||+++|+++++ +...++|++|+|+.
T Consensus 147 ~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~a~~-~~~~v~I~~HiPp~ 225 (296)
T cd00842 147 WLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDELQEAEQ-AGEKVWIIGHIPPG 225 (296)
T ss_pred hcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHHHHHHH-CCCeEEEEeccCCC
Confidence 22211 112346789998 789999999996432 1237899999999999743 23467889999998
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHcC--ccEEEeccccceeeee
Q 022359 141 NSNEAHFMEGESMRAAFESWFVRYK--VDVVFAGHVHAYERSY 181 (298)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~~l~~~~~--v~lvlsGH~H~y~r~~ 181 (298)
...... .....+++.+|+++|. |.++|+||+|..+...
T Consensus 226 ~~~~~~---~~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~~~ 265 (296)
T cd00842 226 VNSYDT---LENWSERYLQIINRYSDTIAGQFFGHTHRDEFRV 265 (296)
T ss_pred Cccccc---chHHHHHHHHHHHHHHHhhheeeecccccceEEE
Confidence 754321 1356788999999996 7789999999977654
No 13
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.81 E-value=2e-19 Score=153.21 Aligned_cols=127 Identities=22% Similarity=0.273 Sum_probs=94.0
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhc-CCCceEEccCCCCccCcCCCCccccccccccccccCcCCC
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA-AYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLAS 80 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~ 80 (298)
+.+||+|+++||++..... ..+|+.+.+.++.+. ..+|+++++||||.
T Consensus 33 ~~~~d~iv~~GDl~~~~~~-----~~~~~~~~~~~~~l~~~~~p~~~~~GNHD~-------------------------- 81 (214)
T cd07399 33 ALNIAFVLHLGDIVDDGDN-----DAEWEAADKAFARLDKAGIPYSVLAGNHDL-------------------------- 81 (214)
T ss_pred HcCCCEEEECCCccCCCCC-----HHHHHHHHHHHHHHHHcCCcEEEECCCCcc--------------------------
Confidence 3579999999999965321 357888888888886 57999999999993
Q ss_pred CCCCCceEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCC-----ChHHHH
Q 022359 81 KSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFME-----GESMRA 155 (298)
Q Consensus 81 ~~~~~~~ys~~~g~v~fi~ldt~~~~~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~-----~~~~~~ 155 (298)
++.+|+. ...+|++||+++|++. +.+++||++|||++..+...... .....+
T Consensus 82 ----------------~~~ld~~----~~~~ql~WL~~~L~~~---~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~ 138 (214)
T cd07399 82 ----------------VLALEFG----PRDEVLQWANEVLKKH---PDRPAILTTHAYLNCDDSRPDSIDYDSDVNDGQQ 138 (214)
T ss_pred ----------------hhhCCCC----CCHHHHHHHHHHHHHC---CCCCEEEEecccccCCCCcCcccccccccccHHH
Confidence 1122221 2378999999999984 33568999999998755422111 123356
Q ss_pred HHHHHHHHc-CccEEEeccccceeeeee
Q 022359 156 AFESWFVRY-KVDVVFAGHVHAYERSYR 182 (298)
Q Consensus 156 ~l~~l~~~~-~v~lvlsGH~H~y~r~~~ 182 (298)
.|.++++++ +|+++||||.|.+.+...
T Consensus 139 ~~~~ll~~~~~V~~v~~GH~H~~~~~~~ 166 (214)
T cd07399 139 IWDKLVKKNDNVFMVLSGHVHGAGRTTL 166 (214)
T ss_pred HHHHHHhCCCCEEEEEccccCCCceEEE
Confidence 788999998 799999999999988753
No 14
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.80 E-value=4.9e-19 Score=154.31 Aligned_cols=163 Identities=21% Similarity=0.267 Sum_probs=105.2
Q ss_pred CCCcEEEEcCcccccCCCcccccchhHHH-H---HHHHHHhcCCCceEEccCCCCccCcCCCCccccccccccccccCcC
Q 022359 3 SGAQTVLFLGDLSYADRYQFIDVGVRWDS-W---GRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHL 78 (298)
Q Consensus 3 ~~pd~vl~~GD~~y~~~~~~~~~~~~~~~-~---~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~ 78 (298)
.+||+||++||++..... .. ..+|.+ + .+.+.++....|++.||||||....... .......|.+.|.
T Consensus 44 l~PD~vv~lGDL~d~G~~--~~-~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~~~-~~~~~~rf~~~Fg---- 115 (257)
T cd08163 44 LKPDSTIFLGDLFDGGRD--WA-DEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGNGV-VLPVRQRFEKYFG---- 115 (257)
T ss_pred cCCCEEEEecccccCCee--Cc-HHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCCCC-CHHHHHHHHHHhC----
Confidence 589999999999964321 11 345533 3 3333332234799999999998543211 1111234444443
Q ss_pred CCCCCCCceEEEEeCCEEEEEEcCCCCC-----CCChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCC----
Q 022359 79 ASKSSSPLWYAIRRASAHIIVLSSYSPF-----VKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFME---- 149 (298)
Q Consensus 79 ~~~~~~~~~ys~~~g~v~fi~ldt~~~~-----~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~---- 149 (298)
..++++++++++||+|||.... ....+|.+||++.|+.. .....+||++|+|+|......|+.
T Consensus 116 ------~~~~~~~~~~~~fV~Lds~~l~~~~~~~~~~~~~~~l~~~l~~~--~~~~p~ILl~H~Plyr~~~~~cg~~re~ 187 (257)
T cd08163 116 ------PTSRVIDVGNHTFVILDTISLSNKDDPDVYQPPREFLHSFSAMK--VKSKPRILLTHVPLYRPPNTSCGPLRES 187 (257)
T ss_pred ------CCceEEEECCEEEEEEccccccCCcccccchhHHHHHHhhhhcc--CCCCcEEEEeccccccCCCCCCCCcccc
Confidence 1357899999999999996422 12467999999999874 333468999999998754322210
Q ss_pred --------ChH----H-HHHHHHHHHHcCccEEEeccccceeeee
Q 022359 150 --------GES----M-RAAFESWFVRYKVDVVFAGHVHAYERSY 181 (298)
Q Consensus 150 --------~~~----~-~~~l~~l~~~~~v~lvlsGH~H~y~r~~ 181 (298)
+.. + .+.-..|+.+.++.+|||||+|.|....
T Consensus 188 ~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C~~~ 232 (257)
T cd08163 188 KTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYCEVV 232 (257)
T ss_pred CCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCccceeE
Confidence 101 1 1233467777799999999999998875
No 15
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.69 E-value=2.9e-16 Score=135.41 Aligned_cols=168 Identities=19% Similarity=0.209 Sum_probs=101.8
Q ss_pred CCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCccCcCCCCccccccccccccccCcCCCCCC
Q 022359 4 GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSS 83 (298)
Q Consensus 4 ~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~ 83 (298)
+||+||++||++.... ........+.++.+ ..|+++|+||||+... . . ..+.+.+ +..+...
T Consensus 41 ~~D~viiaGDl~~~~~------~~~~~~~l~~l~~l--~~~v~~V~GNHD~~~~-~---~---~~~~~~l--~~~~~~~- 102 (232)
T cd07393 41 PEDIVLIPGDISWAMK------LEEAKLDLAWIDAL--PGTKVLLKGNHDYWWG-S---A---SKLRKAL--EESRLAL- 102 (232)
T ss_pred CCCEEEEcCCCccCCC------hHHHHHHHHHHHhC--CCCeEEEeCCccccCC-C---H---HHHHHHH--HhcCeEE-
Confidence 8999999999984321 11122222333322 3589999999998311 1 1 1111111 1000000
Q ss_pred CCceEEEEeCCEEEEEEcCCC----CC-------------CCChHHHHHHHHHHhhcccCC-CCeEEEEeecccccCCCC
Q 022359 84 SPLWYAIRRASAHIIVLSSYS----PF-------------VKYTPQWEWLREELKKVDREK-TPWLIVLMHVPIYNSNEA 145 (298)
Q Consensus 84 ~~~~ys~~~g~v~fi~ldt~~----~~-------------~~~~~Q~~wL~~~L~~~~~~~-~~~~iv~~H~P~~~~~~~ 145 (298)
....++.++++.|++++... .+ ....+|++||++.|+++.... ..++|+++|+|++.....
T Consensus 103 -~~n~~~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~~~ 181 (232)
T cd07393 103 -LFNNAYIDDDVAICGTRGWDNPGNPWPPINETLKVEEDEKIFERELERLELSLKAAKKREKEKIKIVMLHYPPANENGD 181 (232)
T ss_pred -eccCcEEECCEEEEEEEeeCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCCCC
Confidence 00234567889999986311 11 012568999999999853222 247899999998765421
Q ss_pred CCCCChHHHHHHHHHHHHcCccEEEeccccceeeeeeecCceeeccCCccccCCCCCCCEEEEeCCC
Q 022359 146 HFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGDG 212 (298)
Q Consensus 146 ~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~g~~~iv~G~g 212 (298)
.+.+.+++.+++++++|+||+|..++..|+... .+|+.|..+.++
T Consensus 182 --------~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~--------------~~gi~~~~~~~~ 226 (232)
T cd07393 182 --------DSPISKLIEEYGVDICVYGHLHGVGRDRAINGE--------------RGGIRYQLVSAD 226 (232)
T ss_pred --------HHHHHHHHHHcCCCEEEECCCCCCcccccccce--------------ECCEEEEEEcch
Confidence 235678888899999999999999998765321 356777777654
No 16
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.68 E-value=1e-15 Score=140.96 Aligned_cols=94 Identities=13% Similarity=0.237 Sum_probs=71.6
Q ss_pred CCceEEEE-eCCEEEEEEcCCCCC-----CCChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCC-----CCChH
Q 022359 84 SPLWYAIR-RASAHIIVLSSYSPF-----VKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHF-----MEGES 152 (298)
Q Consensus 84 ~~~~ys~~-~g~v~fi~ldt~~~~-----~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~-----~~~~~ 152 (298)
+..||+|+ .++++||+|||.... ...++|++||+++|++. +.+++||++|||++....... .....
T Consensus 290 G~~YYSFd~~ggvrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~a---~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~ 366 (496)
T TIGR03767 290 GTGYYTFDIAGGVRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRAS---SDTLFVLFSHHTSWSMVNELTDPVDPGEKRH 366 (496)
T ss_pred CCceEEEEeECCEEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhcC---CCCCEEEEECCCCcccccccccccccccccc
Confidence 56799999 899999999997531 23589999999999973 346899999999987543110 01112
Q ss_pred HHHHHHHHHHHc-CccEEEeccccceeee
Q 022359 153 MRAAFESWFVRY-KVDVVFAGHVHAYERS 180 (298)
Q Consensus 153 ~~~~l~~l~~~~-~v~lvlsGH~H~y~r~ 180 (298)
..++|.++|+++ +|.++||||.|.-...
T Consensus 367 n~~eLldLL~~ypnV~aVfsGHvH~n~i~ 395 (496)
T TIGR03767 367 LGTELVSLLLEHPNVLAWVNGHTHSNKIT 395 (496)
T ss_pred CHHHHHHHHhcCCCceEEEECCcCCCccc
Confidence 246899999998 8999999999987544
No 17
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.66 E-value=4.2e-17 Score=132.16 Aligned_cols=166 Identities=21% Similarity=0.223 Sum_probs=83.4
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHH-HHHHHhcCCCceEEccCCCCccCcCCCCccccccccccccccCcCCC
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWG-RFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLAS 80 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~ 80 (298)
+.++|+||++||+++..... ..+.... ..........|+++++||||+........................
T Consensus 29 ~~~~d~ii~~GD~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~-- 101 (200)
T PF00149_consen 29 ENKPDFIIFLGDLVDGGNPS-----EEWRAQFWFFIRLLNPKIPVYFILGNHDYYSGNSFYGFYDYQFEDYYGNYNYY-- 101 (200)
T ss_dssp HTTTSEEEEESTSSSSSSHH-----HHHHHHHHHHHHHHHTTTTEEEEE-TTSSHHHHHHHHHHHHHHSSEEECSSEE--
T ss_pred cCCCCEEEeecccccccccc-----ccchhhhccchhhhhccccccccccccccceeccccccccccccccccccccc--
Confidence 36899999999999765431 1111111 123344568999999999999532110000000000000000000
Q ss_pred CCCCCceEEEEeCCEEEEEEcCCCCCCCCh---HHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCC--CChHHHH
Q 022359 81 KSSSPLWYAIRRASAHIIVLSSYSPFVKYT---PQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFM--EGESMRA 155 (298)
Q Consensus 81 ~~~~~~~ys~~~g~v~fi~ldt~~~~~~~~---~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~--~~~~~~~ 155 (298)
....+...............+......... .++.|+...++. ...+++||++|+|++........ .....++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~ 178 (200)
T PF00149_consen 102 YSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWWLWLLLLLEA---KNDDPVIVFTHHPPYSSSSDSSSYGNESKGRE 178 (200)
T ss_dssp ECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHHHHHHHHHHE---EEESEEEEEESSSSSTTSSSTHHHSSEEEHHH
T ss_pred cccCcceeeecccccccccccccccccccccchhccccccccccc---ccccceeEEEecCCCCccccccccchhhccHH
Confidence 000000011111222222211111111112 233333333333 45679999999999987654311 1134578
Q ss_pred HHHHHHHHcCccEEEeccccce
Q 022359 156 AFESWFVRYKVDVVFAGHVHAY 177 (298)
Q Consensus 156 ~l~~l~~~~~v~lvlsGH~H~y 177 (298)
.+..++.+++|+++|+||+|.|
T Consensus 179 ~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 179 ALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp HHHHHHHHTTCSEEEEESSSSE
T ss_pred HHHHHHhhCCCCEEEeCceecC
Confidence 8899999999999999999986
No 18
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.60 E-value=3.1e-14 Score=118.41 Aligned_cols=148 Identities=14% Similarity=0.119 Sum_probs=89.0
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCccCcCCCCccccccccccccccCcCCCC
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASK 81 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~~ 81 (298)
+.+||+||++||++..... .....+ +.+.. ...|+++++||||.... ..........
T Consensus 21 ~~~~D~vv~~GDl~~~~~~------~~~~~~-~~l~~--~~~p~~~v~GNHD~~~~--------~~~~~~~~~~------ 77 (188)
T cd07392 21 AEEADAVIVAGDITNFGGK------EAAVEI-NLLLA--IGVPVLAVPGNCDTPEI--------LGLLTSAGLN------ 77 (188)
T ss_pred ccCCCEEEECCCccCcCCH------HHHHHH-HHHHh--cCCCEEEEcCCCCCHHH--------HHhhhcCcEe------
Confidence 4579999999999954221 111111 22222 36899999999997311 0000000000
Q ss_pred CCCCceEEEEeCCEEEEEEcCCCC--C----CCChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCCC-hHHH
Q 022359 82 SSSPLWYAIRRASAHIIVLSSYSP--F----VKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEG-ESMR 154 (298)
Q Consensus 82 ~~~~~~ys~~~g~v~fi~ldt~~~--~----~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~-~~~~ 154 (298)
..+ ..+.+++++|+++++... + ....+|++|+ +.|+. .+.+..|+++|+||+.......... ..-.
T Consensus 78 -~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~l~~---~~~~~~ilv~H~pp~~~~~d~~~~~~~~g~ 150 (188)
T cd07392 78 -LHG--KVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSD-GRLNN---LLAKNLILVTHAPPYGTAVDRVSGGFHVGS 150 (188)
T ss_pred -cCC--CEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHh-hhhhc---cCCCCeEEEECCCCcCCcccccCCCCccCC
Confidence 011 245678899999997432 1 2346788998 44443 3345689999999976311111111 1124
Q ss_pred HHHHHHHHHcCccEEEeccccceee
Q 022359 155 AAFESWFVRYKVDVVFAGHVHAYER 179 (298)
Q Consensus 155 ~~l~~l~~~~~v~lvlsGH~H~y~r 179 (298)
+.+.+++++++++++||||.|.-..
T Consensus 151 ~~l~~li~~~~~~~~l~GH~H~~~~ 175 (188)
T cd07392 151 KAIRKFIEERQPLLCICGHIHESRG 175 (188)
T ss_pred HHHHHHHHHhCCcEEEEeccccccc
Confidence 6788889899999999999998643
No 19
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.58 E-value=2e-14 Score=121.14 Aligned_cols=126 Identities=21% Similarity=0.284 Sum_probs=82.4
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhc-CCCceEEccCCCCccCcCCCCccccccccccccccCcCCC
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA-AYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLAS 80 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~ 80 (298)
+.+||+||++||+++..... ...+..+.+.++++. ..+|+++++||||..
T Consensus 39 ~~~~d~vv~~GDl~~~~~~~----~~~~~~~~~~~~~l~~~~~p~~~~~GNHD~~------------------------- 89 (199)
T cd07383 39 AEKPDLVVLTGDLITGENTN----DNSTSALDKAVSPMIDRKIPWAATFGNHDGY------------------------- 89 (199)
T ss_pred hcCCCEEEECCccccCCCCc----hHHHHHHHHHHHHHHHcCCCEEEECccCCCC-------------------------
Confidence 45799999999999764431 112345555566554 369999999999910
Q ss_pred CCCCCceEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhcc--cCCCCeEEEEeecccccCCCCC---------CCC
Q 022359 81 KSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVD--REKTPWLIVLMHVPIYNSNEAH---------FME 149 (298)
Q Consensus 81 ~~~~~~~ys~~~g~v~fi~ldt~~~~~~~~~Q~~wL~~~L~~~~--~~~~~~~iv~~H~P~~~~~~~~---------~~~ 149 (298)
. ...+.|++||+++|++.. +....+.++++|||+....... ..+
T Consensus 90 ------------------------g-~l~~~ql~wL~~~l~~~~~~~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d 144 (199)
T cd07383 90 ------------------------D-WIRPSQIEWFKETSAALKKKYGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNE 144 (199)
T ss_pred ------------------------C-CCCHHHHHHHHHHHHHHhhccCCCCcceEEEecChHHHHhhhcccCCCCccCCc
Confidence 0 123589999999999853 2234578999999986542210 001
Q ss_pred ---ChHHHHH-HHHHHHHcCccEEEeccccceeeee
Q 022359 150 ---GESMRAA-FESWFVRYKVDVVFAGHVHAYERSY 181 (298)
Q Consensus 150 ---~~~~~~~-l~~l~~~~~v~lvlsGH~H~y~r~~ 181 (298)
....... +..+.+..+|+++|+||+|.++...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~v~~v~~GH~H~~~~~~ 180 (199)
T cd07383 145 KVCCPKINSGLFKALLERGDVKGVFCGHDHGNDFCG 180 (199)
T ss_pred ccCCCcCCcHHHHHHHHcCCeEEEEeCCCCCcceec
Confidence 0111223 3444466799999999999976654
No 20
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.57 E-value=3.5e-14 Score=123.02 Aligned_cols=155 Identities=16% Similarity=0.158 Sum_probs=90.7
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCccCcCCCCccccccccccccccCcCCCC
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASK 81 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~~ 81 (298)
+.++|+||++||++.. .. ....+.+.+..+ ...|++.++||||+..... +..+...+. + .
T Consensus 30 ~~~~d~vv~~GDl~~~--~~------~~~~~~~~l~~~-~~~pv~~v~GNHD~~~~~~------~~~~~~~~~-~----~ 89 (239)
T TIGR03729 30 KQKIDHLHIAGDISND--FQ------RSLPFIEKLQEL-KGIKVTFNAGNHDMLKDLT------YEEIESNDS-P----L 89 (239)
T ss_pred hcCCCEEEECCccccc--hh------hHHHHHHHHHHh-cCCcEEEECCCCCCCCCCC------HHHHHhccc-h----h
Confidence 3579999999999943 11 112333333332 4589999999999841111 111111100 0 0
Q ss_pred CCCCceEEEEeCCEEEEEEcCCCC--------------------------CC-----CChHHHHHHHHHHhhcccCCCCe
Q 022359 82 SSSPLWYAIRRASAHIIVLSSYSP--------------------------FV-----KYTPQWEWLREELKKVDREKTPW 130 (298)
Q Consensus 82 ~~~~~~ys~~~g~v~fi~ldt~~~--------------------------~~-----~~~~Q~~wL~~~L~~~~~~~~~~ 130 (298)
...+.++.+..++++|++++...+ .. ..++|++||++.|+++ ..+.
T Consensus 90 ~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~~~ 166 (239)
T TIGR03729 90 YLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEILRWKKSFWFDRRIKRPMSDPERTAIVLKQLKKQLNQL---DNKQ 166 (239)
T ss_pred hhcccccccCCCceEEEeeccceecccccccCHHHHHHhhhcEEeecccCCCCChHHHHHHHHHHHHHHHHhc---CCCC
Confidence 011222333347788888883111 10 1256899999999875 2245
Q ss_pred EEEEeecccccCCC----C--CCCCChH--HHHHHHHHHHHcCccEEEeccccceee
Q 022359 131 LIVLMHVPIYNSNE----A--HFMEGES--MRAAFESWFVRYKVDVVFAGHVHAYER 179 (298)
Q Consensus 131 ~iv~~H~P~~~~~~----~--~~~~~~~--~~~~l~~l~~~~~v~lvlsGH~H~y~r 179 (298)
+||++||||..... . .+..... -.+.+.+++++++|+++|+||.|.-..
T Consensus 167 ~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~~v~~~i~GH~H~~~~ 223 (239)
T TIGR03729 167 VIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFGQLLVKYEIKDVIFGHLHRRFG 223 (239)
T ss_pred EEEEEcccchHHHhcCCCCCcchhhhhhccChHHHHHHHHHhCCCEEEECCccCCCC
Confidence 78888998854211 1 1111001 136888999999999999999998753
No 21
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.52 E-value=2.5e-13 Score=124.18 Aligned_cols=93 Identities=20% Similarity=0.380 Sum_probs=65.5
Q ss_pred CCceEEEE-eCCE--EEEEEcCCCCC-----------CCChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCC---
Q 022359 84 SPLWYAIR-RASA--HIIVLSSYSPF-----------VKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAH--- 146 (298)
Q Consensus 84 ~~~~ys~~-~g~v--~fi~ldt~~~~-----------~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~--- 146 (298)
+..||+|+ .+++ |+|+|||.... ...++|++||+++|+++. .+.+++||++|+|+.+.+...
T Consensus 291 G~~yYsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~-a~~p~VVV~hHpPi~t~gi~~md~ 369 (492)
T TIGR03768 291 DFACYSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQ-ADGQLMIIAAHIPIAVSPIGSEME 369 (492)
T ss_pred CcceeEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCc-CCCceEEEEeCCCcccCCccchhh
Confidence 34599999 4755 99999987411 124899999999999863 245788888888887632211
Q ss_pred CC----------CChHHHHHHHHHHHHc-CccEEEeccccce
Q 022359 147 FM----------EGESMRAAFESWFVRY-KVDVVFAGHVHAY 177 (298)
Q Consensus 147 ~~----------~~~~~~~~l~~l~~~~-~v~lvlsGH~H~y 177 (298)
+. .......+|..+|++| +|.++||||.|.-
T Consensus 370 w~~~~~~~~~~L~n~~~~~eLlaLL~~hPnVla~LsGHvHrn 411 (492)
T TIGR03768 370 WWLGAADANPDLQNAVSLTGLVTTLQKYPNLLMWIAGHRHLN 411 (492)
T ss_pred hccccccccccccccccHHHHHHHHhcCCCeEEEEcCCcccc
Confidence 00 0011124788999998 7889999999954
No 22
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.52 E-value=1e-13 Score=110.60 Aligned_cols=95 Identities=22% Similarity=0.292 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCC-CceEEccCCCCccCcCCCCccccccccccccccCcCCC
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAY-QPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLAS 80 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~ 80 (298)
+.+||+|+++||+++... ..+|+.+.++++.+... .|++.++||||.
T Consensus 33 ~~~~d~vi~~GDl~~~~~------~~~~~~~~~~~~~l~~~~~~~~~v~GNHD~-------------------------- 80 (144)
T cd07400 33 ALDPDLVVITGDLTQRGL------PEEFEEAREFLDALPAPLEPVLVVPGNHDV-------------------------- 80 (144)
T ss_pred ccCCCEEEECCCCCCCCC------HHHHHHHHHHHHHccccCCcEEEeCCCCeE--------------------------
Confidence 467999999999996532 34566777777777544 699999999994
Q ss_pred CCCCCceEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCCChHHHHHHHHH
Q 022359 81 KSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESW 160 (298)
Q Consensus 81 ~~~~~~~ys~~~g~v~fi~ldt~~~~~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l 160 (298)
|+++|+|+........ ......+.+.++
T Consensus 81 ---------------------------------------------------iv~~Hhp~~~~~~~~~-~~~~~~~~~~~~ 108 (144)
T cd07400 81 ---------------------------------------------------IVVLHHPLVPPPGSGR-ERLLDAGDALKL 108 (144)
T ss_pred ---------------------------------------------------EEEecCCCCCCCcccc-ccCCCHHHHHHH
Confidence 8889999877644221 111145678999
Q ss_pred HHHcCccEEEeccccceeee
Q 022359 161 FVRYKVDVVFAGHVHAYERS 180 (298)
Q Consensus 161 ~~~~~v~lvlsGH~H~y~r~ 180 (298)
+.+++++++|+||+|.....
T Consensus 109 l~~~~~~~~l~GH~H~~~~~ 128 (144)
T cd07400 109 LAEAGVDLVLHGHKHVPYVG 128 (144)
T ss_pred HHHcCCCEEEECCCCCcCee
Confidence 99999999999999997654
No 23
>PF14008 Metallophos_C: Iron/zinc purple acid phosphatase-like protein C; PDB: 3KBP_B 1KBP_B 4KBP_C 2QFP_B 2QFR_A 1XZW_B.
Probab=99.49 E-value=7.6e-14 Score=94.60 Aligned_cols=62 Identities=45% Similarity=0.838 Sum_probs=40.6
Q ss_pred CCCEEEEeCCCCCCCCCCCCCCCCCCCCcceeeCcccEEEEEEecCceEEEEEEEcCCCceeeeeeE
Q 022359 202 SAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWNRNDDGKKVATDSF 268 (298)
Q Consensus 202 ~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~~~~l~~~~~~~~dg~~~~~D~f 268 (298)
++|+|||+|+||+.+ ..+..++|+|++++...+||++|++.|.|+|.|+|+++.||+++ |+|
T Consensus 1 kapVhiv~G~aG~~l---~~~~~~~~~wsa~r~~~~Gy~~l~v~N~T~l~~e~i~~~~g~v~--D~f 62 (62)
T PF14008_consen 1 KAPVHIVVGAAGNGL---DPFPYPPPEWSAFRDSEYGYGRLTVANATHLHWEFIRSDDGSVL--DEF 62 (62)
T ss_dssp TS-EEEEE--S-T-------B-SS--TTEEEEE---EEEEEEE-SSSEEEEEEEETTS-T-C--EE-
T ss_pred CCCEEEEECcCCCCc---ccccCCCCCeeeeeccccCEEEEEEEcCCeEEEEEEECCCCcEe--cCC
Confidence 368999999999943 24566789999999999999999999999999999999999975 987
No 24
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.49 E-value=4.6e-13 Score=119.09 Aligned_cols=155 Identities=17% Similarity=0.212 Sum_probs=96.5
Q ss_pred CCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCccCcCCCCccccccccccccccCcCCCCC
Q 022359 3 SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKS 82 (298)
Q Consensus 3 ~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~~~ 82 (298)
.+||+||++||++.. +. ....+...++++......|++++|||||..... ...+...+....
T Consensus 32 ~~~D~~v~tGDl~~~-~~-----~~~~~~~~~~l~~~~~~~~~~~vpGNHD~~~~~-------~~~~~~~~~~~~----- 93 (301)
T COG1409 32 LKPDLLVVTGDLTND-GE-----PEEYRRLKELLARLELPAPVIVVPGNHDARVVN-------GEAFSDQFFNRY----- 93 (301)
T ss_pred CCCCEEEEccCcCCC-CC-----HHHHHHHHHHHhhccCCCceEeeCCCCcCCchH-------HHHhhhhhcccC-----
Confidence 578999999999975 32 233344445555444567999999999985211 111111111100
Q ss_pred CCCceEEEEe-CCEEEEEEcCCCCC----CCChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCCChHHHHHH
Q 022359 83 SSPLWYAIRR-ASAHIIVLSSYSPF----VKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAF 157 (298)
Q Consensus 83 ~~~~~ys~~~-g~v~fi~ldt~~~~----~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l 157 (298)
..+-.... ++++++.+||.... .....|++||++.|++........+|+++|||+.................+
T Consensus 94 --~~~~~~~~~~~~~~~~~d~~~~~~~~G~~~~~q~~~l~~~l~~~~~~~~~~~v~~~hh~~~~~~~~~~~~~l~~~~~~ 171 (301)
T COG1409 94 --AVLVGACSSGGWRVIGLDSSVPGVPLGRLGAEQLDWLEEALAAAPERAKDTVVVLHHHPLPSPGTGVDRVALRDAGEL 171 (301)
T ss_pred --cceEeeccCCceEEEEecCCCCCCCCCEECHHHHHHHHHHHHhCccccCceEEEecCCCCCCCCCccceeeeecchhH
Confidence 01111112 67899999997642 246899999999999853221135677777777765443222222234566
Q ss_pred HHHHHHcC--ccEEEeccccce
Q 022359 158 ESWFVRYK--VDVVFAGHVHAY 177 (298)
Q Consensus 158 ~~l~~~~~--v~lvlsGH~H~y 177 (298)
..++..++ |+++|+||.|..
T Consensus 172 ~~~~~~~~~~v~~vl~GH~H~~ 193 (301)
T COG1409 172 LDVLIAHGNDVRLVLSGHIHLA 193 (301)
T ss_pred HHHHHhcCCceEEEEeCccccc
Confidence 67778887 999999999987
No 25
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.45 E-value=1.3e-12 Score=106.77 Aligned_cols=125 Identities=17% Similarity=0.265 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCccCcCCCCccccccccccccccCcCCCC
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASK 81 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~~ 81 (298)
+.++|+|+++||+++.... ..+...........|+++++||||+.. .+. ..
T Consensus 24 ~~~~d~li~~GDi~~~~~~---------~~~~~~~~~~~~~~~v~~v~GNHD~~~-----------~~~---G~------ 74 (166)
T cd07404 24 APDADILVLAGDIGYLTDA---------PRFAPLLLALKGFEPVIYVPGNHEFYV-----------RII---GT------ 74 (166)
T ss_pred CCCCCEEEECCCCCCCcch---------HHHHHHHHhhcCCccEEEeCCCcceEE-----------EEE---ee------
Confidence 3579999999999954221 122222333345689999999999730 000 00
Q ss_pred CCCCceEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCC-C--C-CChHHHHHH
Q 022359 82 SSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAH-F--M-EGESMRAAF 157 (298)
Q Consensus 82 ~~~~~~ys~~~g~v~fi~ldt~~~~~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~-~--~-~~~~~~~~l 157 (298)
..||.+... ..++.+|+.++++ +.+||++||||....... . . ......+.+
T Consensus 75 ---~~w~~~~~~---------------~~~~~~~~~~d~~-------~~~vv~~HhpP~~~~~~~~~~~~~~~~~~~~~l 129 (166)
T cd07404 75 ---TLWSDISLF---------------GEAAARMRMNDFR-------GKTVVVTHHAPSPLSLAPQYGDSLVNAAFAVDL 129 (166)
T ss_pred ---ecccccCcc---------------chHHHHhCCCCCC-------CCEEEEeCCCCCccccCccccCCCcchhhhhcc
Confidence 112222111 1123333333322 357999999998754321 0 1 112345567
Q ss_pred HHHHHHcCccEEEeccccceeee
Q 022359 158 ESWFVRYKVDVVFAGHVHAYERS 180 (298)
Q Consensus 158 ~~l~~~~~v~lvlsGH~H~y~r~ 180 (298)
..++++.+|+++++||+|.....
T Consensus 130 ~~~~~~~~v~~~i~GH~H~~~~~ 152 (166)
T cd07404 130 DDLILADPIDLWIHGHTHFNFDY 152 (166)
T ss_pred HhHHhhcCCCEEEECCccccceE
Confidence 78888899999999999987543
No 26
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=99.40 E-value=6.2e-12 Score=118.92 Aligned_cols=173 Identities=22% Similarity=0.332 Sum_probs=88.0
Q ss_pred CCCcEEEEcCcccccCCCc---c-------------cccchhHHHHHH---------HHHHhcCCCceEEccCCCCccCc
Q 022359 3 SGAQTVLFLGDLSYADRYQ---F-------------IDVGVRWDSWGR---------FVERSAAYQPWIWSAGNHEIEYM 57 (298)
Q Consensus 3 ~~pd~vl~~GD~~y~~~~~---~-------------~~~~~~~~~~~~---------~~~~~~~~~P~~~v~GNHD~~~~ 57 (298)
.+|||+|++||.+|.+... . .+ ...-+.|.+ .++.+...+|+++++-+||+..+
T Consensus 131 ~~~D~~l~lGD~IY~d~~~~~~~~~~~~~~r~~~p~~~-~~~l~~yR~~y~~~~~~p~l~~~~~~~P~~~iwDDHdi~nn 209 (453)
T PF09423_consen 131 DDPDFVLHLGDQIYEDGGGGYGNLSRRPIGRAPEPAHE-AETLDDYRRRYRQYRSDPDLRRLHANVPWIMIWDDHDIGNN 209 (453)
T ss_dssp S--SEEEE-S-SS----TTSS--TT---S-----SSSS---SHHHHHHHHHHHHT-HHHHHHHHHSEEEE---STTTSTT
T ss_pred CCCcEEEEeCCeeeccCCcccccccccccccccccccc-cccHHHHHHHHHHHcCCHHHHHHhhcccEEEEccCceeccc
Confidence 5899999999999998630 0 00 111122222 23445567899999999999532
Q ss_pred CCCCccc-------cc--------cccccccccCcCC---CCCCCCceEEEEeCC-EEEEEEcCCCC-----CC------
Q 022359 58 TYMGEVV-------PF--------KSYLHRYPTPHLA---SKSSSPLWYAIRRAS-AHIIVLSSYSP-----FV------ 107 (298)
Q Consensus 58 ~~~~~~~-------~~--------~~~~~~f~~p~~~---~~~~~~~~ys~~~g~-v~fi~ldt~~~-----~~------ 107 (298)
....... .+ ..|... +|... .......|++|.+|+ +.|++||+... ..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~a~~ay~e~--~p~r~~~~~~~~~~~y~~~~~G~~~~~~~LD~R~~R~~~~~~~~~~~~ 287 (453)
T PF09423_consen 210 WWGDGAENHQDTSGDFQDRRRAAYQAYFEY--QPVRNPDPPGDQGRIYRSFRYGDLVEFFMLDTRSYRSPPPCDGPGDTC 287 (453)
T ss_dssp -BTTB-STT---HHHHHHHHHHHHHHHHHH--S---GGG-BTTB----EEEEETTTEEEEE--SSSS----CCCSSEE--
T ss_pred ccCCccccccccccchHHHHHHHHHHHHhh--cCccCCCccCCCCceEEEEecCCceeEEEEechhcccccccccccccc
Confidence 2111110 01 122221 22211 112345688999999 99999999531 10
Q ss_pred ----------CChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCC-----------CCCCCChHHHHHHHHHHHHcCc
Q 022359 108 ----------KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNE-----------AHFMEGESMRAAFESWFVRYKV 166 (298)
Q Consensus 108 ----------~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~-----------~~~~~~~~~~~~l~~l~~~~~v 166 (298)
.+.+|++||++.|++ +..+|+||+.-.|+..... ..+......+++|.++|.+.++
T Consensus 288 ~~~~~~~~~mLG~~Q~~wL~~~L~~---s~a~~kvi~s~v~~~~~~~~~~~~~~~~~~d~W~g~~~er~~Ll~~l~~~~~ 364 (453)
T PF09423_consen 288 PAADDPSRTMLGEEQWDWLEDWLAS---SQATWKVIGSSVPFSPLNFPDAAEGLPFNMDSWDGYPAERQRLLDFLRESGI 364 (453)
T ss_dssp HHHH-TT--SS-HHHHHHHHHHHHH-----SSEEEEE-SS--S---SS-SS-S--EETTSGGGSHHHHHHHHHHHHHTT-
T ss_pred ccccCCccCcCCHHHHHHHHHHHhc---CCCcEEEEEeCCceecccccccccccccCCCchhhCHHHHHHHHHHHHhhCC
Confidence 147899999999998 4478999998887644321 1223345678999999988876
Q ss_pred c--EEEeccccceeeee
Q 022359 167 D--VVFAGHVHAYERSY 181 (298)
Q Consensus 167 ~--lvlsGH~H~y~r~~ 181 (298)
. ++|||.+|......
T Consensus 365 ~~vV~LSGDvH~~~~~~ 381 (453)
T PF09423_consen 365 RNVVFLSGDVHASAASR 381 (453)
T ss_dssp --EEEEE-SSSSEEEEE
T ss_pred CCEEEEecCcchheeee
Confidence 4 88999999987665
No 27
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.36 E-value=1.4e-11 Score=104.98 Aligned_cols=151 Identities=15% Similarity=0.191 Sum_probs=87.4
Q ss_pred CCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcC-CCceEEccCCCCccCcCCCCccccccccccccccCcCCCC
Q 022359 3 SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-YQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASK 81 (298)
Q Consensus 3 ~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~~ 81 (298)
.++|+|+++||++..... .+.+.++++.+.. ..|+++++||||......+. ..|......|.. .
T Consensus 30 ~~~D~vv~~GDl~~~g~~--------~~~~~~~l~~l~~l~~pv~~V~GNhD~~v~~~l~-----~~~~~~~~~p~~--~ 94 (224)
T cd07388 30 TGADAIVLIGNLLPKAAK--------SEDYAAFFRILGEAHLPTFYVPGPQDAPLWEYLR-----EAYNAELVHPEI--R 94 (224)
T ss_pred cCCCEEEECCCCCCCCCC--------HHHHHHHHHHHHhcCCceEEEcCCCChHHHHHHH-----HHhcccccCccc--e
Confidence 579999999999964211 1334444554433 57999999999962100000 011111111210 0
Q ss_pred CCCCceEEEEe-CCEEEEEEcCCCCC--CCChHHH----HHHHH-HHhhcccCCCCeEEEEeecccccCCCCCCCCChHH
Q 022359 82 SSSPLWYAIRR-ASAHIIVLSSYSPF--VKYTPQW----EWLRE-ELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESM 153 (298)
Q Consensus 82 ~~~~~~ys~~~-g~v~fi~ldt~~~~--~~~~~Q~----~wL~~-~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~ 153 (298)
..... ...+ |+++|++|+..... ...++|. +||.+ .|+...+...+..|+++|+||+..+..| .-
T Consensus 95 ~lh~~--~~~~~g~~~~~GlGGs~~~~~e~sE~e~~~~~~~~~~~~l~~~~~~~~~~~VLv~H~PP~g~g~~h-----~G 167 (224)
T cd07388 95 NVHET--FAFWRGPYLVAGVGGEIADEGEPEEHEALRYPAWVAEYRLKALWELKDYRKVFLFHTPPYHKGLNE-----QG 167 (224)
T ss_pred ecCCC--eEEecCCeEEEEecCCcCCCCCcCHHHHhhhhhhHHHHHHHHHHhCCCCCeEEEECCCCCCCCCCc-----cC
Confidence 01111 2344 55999999975543 2344442 56433 2222211234478999999999874323 12
Q ss_pred HHHHHHHHHHcCccEEEecccc
Q 022359 154 RAAFESWFVRYKVDVVFAGHVH 175 (298)
Q Consensus 154 ~~~l~~l~~~~~v~lvlsGH~H 175 (298)
.+.+..+++++++.++||||.|
T Consensus 168 S~alr~~I~~~~P~l~i~GHih 189 (224)
T cd07388 168 SHEVAHLIKTHNPLVVLVGGKG 189 (224)
T ss_pred HHHHHHHHHHhCCCEEEEcCCc
Confidence 3577788999999999999999
No 28
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.36 E-value=4.4e-12 Score=108.31 Aligned_cols=165 Identities=16% Similarity=0.101 Sum_probs=89.5
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhc-CCCceEEccCCCCccCcCCCCccccccccccccccCcCCC
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA-AYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLAS 80 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~ 80 (298)
+.+||+||++||++...... ...+..+.+.++.+. ..+|+++++||||...... .......+.. +..-....
T Consensus 39 ~~~~d~i~~~GD~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~GNHD~~~~~~--~~~~~~~~~~-~~~~~~~~ 111 (223)
T cd00840 39 EEKVDFVLIAGDLFDSNNPS----PEALELLIEALRRLKEAGIPVFIIAGNHDSPSRLG--ALSPLLALSG-LHLVGVEE 111 (223)
T ss_pred hcCCCEEEECCcccCCCCCC----HHHHHHHHHHHHHHHHCCCCEEEecCCCCCccccc--cccchHhhCc-EEEEcccC
Confidence 46899999999999654321 234455666666654 4789999999999853211 0000000000 00000000
Q ss_pred CCCCCceEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCCChHHHHHHHHH
Q 022359 81 KSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESW 160 (298)
Q Consensus 81 ~~~~~~~ys~~~g~v~fi~ldt~~~~~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l 160 (298)
.........++..++.|++++..... ....+.++++..+.+. .+....|++.|.|+.......... .......
T Consensus 112 ~~~~~~~~~~~~~~v~i~g~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~Il~~H~~~~~~~~~~~~~----~~~~~~~ 184 (223)
T cd00840 112 DVLTPLLLPKGGTGVAIYGLPYLRRS-RLRDLLADAELRPRPL--DPDDFNILLLHGGVAGAGPSDSER----APFVPEA 184 (223)
T ss_pred cceeEEEeccCCeEEEEEECCCCCHH-HHHHHHHHHHHHhhcc--CCCCcEEEEEeeeeecCCCCcccc----cccCcHh
Confidence 00011112233456788888754321 1123344444444443 345578999999986544321110 1223344
Q ss_pred HHHcCccEEEeccccceeee
Q 022359 161 FVRYKVDVVFAGHVHAYERS 180 (298)
Q Consensus 161 ~~~~~v~lvlsGH~H~y~r~ 180 (298)
+...++|++++||.|..+..
T Consensus 185 ~~~~~~d~v~~GH~H~~~~~ 204 (223)
T cd00840 185 LLPAGFDYVALGHIHRPQII 204 (223)
T ss_pred hcCcCCCEEECCCcccCeee
Confidence 56778999999999998664
No 29
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.35 E-value=4.3e-12 Score=108.56 Aligned_cols=144 Identities=17% Similarity=0.065 Sum_probs=82.4
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCccCcCCCCccccccccccccccCcCCCC
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASK 81 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~~ 81 (298)
+.+||+||++||+++..... . +.+.+.++.+....|+++++||||+...... .+....+...+.
T Consensus 30 ~~~~d~vl~~GD~~~~~~~~-----~--~~~~~~l~~l~~~~~v~~v~GNHD~~~~~~~----~~~~~l~~~~v~----- 93 (223)
T cd07385 30 ALKPDLVVLTGDLVDGSVDV-----L--ELLLELLKKLKAPLGVYAVLGNHDYYSGDEE----NWIEALESAGIT----- 93 (223)
T ss_pred ccCCCEEEEcCcccCCcchh-----h--HHHHHHHhccCCCCCEEEECCCcccccCchH----HHHHHHHHcCCE-----
Confidence 46799999999999653221 1 3455666666667899999999998532110 000111100000
Q ss_pred CCCCceEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCCChHHHHHHHHHH
Q 022359 82 SSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWF 161 (298)
Q Consensus 82 ~~~~~~ys~~~g~v~fi~ldt~~~~~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~ 161 (298)
...+....++.++..+.++--... ....+++.+.+++. ++.+..|++.|.|.... . +
T Consensus 94 ~L~~~~~~~~~~~~~i~i~G~~~~----~~~~~~~~~~~~~~--~~~~~~I~l~H~P~~~~-------------~----~ 150 (223)
T cd07385 94 VLRNESVEISVGGATIGIAGVDDG----LGRRPDLEKALKGL--DEDDPNILLAHQPDTAE-------------E----A 150 (223)
T ss_pred EeecCcEEeccCCeEEEEEeccCc----cccCCCHHHHHhCC--CCCCCEEEEecCCChhH-------------H----h
Confidence 011233445555544333321111 12234566666654 34557899999874321 1 1
Q ss_pred HHcCccEEEeccccceeeeeeec
Q 022359 162 VRYKVDVVFAGHVHAYERSYRIS 184 (298)
Q Consensus 162 ~~~~v~lvlsGH~H~y~r~~~~~ 184 (298)
.+.++|++++||+|..|...|..
T Consensus 151 ~~~~~dl~l~GHtHggqi~~~~~ 173 (223)
T cd07385 151 AAWGVDLQLSGHTHGGQIRLPGI 173 (223)
T ss_pred cccCccEEEeccCCCCEEecccc
Confidence 46789999999999999776543
No 30
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.29 E-value=3.8e-11 Score=92.79 Aligned_cols=96 Identities=27% Similarity=0.309 Sum_probs=70.4
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCccCcCCCCccccccccccccccCcCCCC
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASK 81 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~~ 81 (298)
+.++++||++||+++.... ..+..+...........|+++++||||
T Consensus 24 ~~~~~~vi~~GD~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~GNHD---------------------------- 69 (131)
T cd00838 24 AEKPDFVLVLGDLVGDGPD------PEEVLAAALALLLLLGIPVYVVPGNHD---------------------------- 69 (131)
T ss_pred ccCCCEEEECCcccCCCCC------chHHHHHHHHHhhcCCCCEEEeCCCce----------------------------
Confidence 4689999999999976443 122222223333446789999999999
Q ss_pred CCCCceEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCCChHHHHHHHHHH
Q 022359 82 SSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWF 161 (298)
Q Consensus 82 ~~~~~~ys~~~g~v~fi~ldt~~~~~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~ 161 (298)
|+++|.|++.............+..+..++
T Consensus 70 --------------------------------------------------i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (131)
T cd00838 70 --------------------------------------------------ILLTHGPPYDPLDELSPDEDPGSEALLELL 99 (131)
T ss_pred --------------------------------------------------EEEeccCCCCCchhhcccchhhHHHHHHHH
Confidence 899999998765432222222467888889
Q ss_pred HHcCccEEEeccccceeeee
Q 022359 162 VRYKVDVVFAGHVHAYERSY 181 (298)
Q Consensus 162 ~~~~v~lvlsGH~H~y~r~~ 181 (298)
.+.+++++|+||.|.+++..
T Consensus 100 ~~~~~~~~~~GH~H~~~~~~ 119 (131)
T cd00838 100 EKYGVDLVLSGHTHVYERRE 119 (131)
T ss_pred HHhCCCEEEeCCeecccccc
Confidence 99999999999999999875
No 31
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=99.25 E-value=3.2e-11 Score=99.91 Aligned_cols=109 Identities=20% Similarity=0.262 Sum_probs=69.7
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHh---cCCCceEEccCCCCccCcCCCCccccccccccccccCcC
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERS---AAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHL 78 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~---~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~ 78 (298)
..+||+|+++||+++.....+ ..+|.+..+.+..+ ...+|++.++||||..+...... ..-.++|.
T Consensus 40 ~l~PD~Vi~lGDL~D~G~~~~---~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~~~~~~----~~~v~RF~---- 108 (195)
T cd08166 40 FVQPDIVIFLGDLMDEGSIAN---DDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGEEEDPI----ESKIRRFE---- 108 (195)
T ss_pred ccCCCEEEEeccccCCCCCCC---HHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCCCCCcC----HHHHHHHH----
Confidence 358999999999997644322 33444433333333 23689999999999853211000 01112221
Q ss_pred CCCCCCCceEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCCChHHHHHHH
Q 022359 79 ASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFE 158 (298)
Q Consensus 79 ~~~~~~~~~ys~~~g~v~fi~ldt~~~~~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~ 158 (298)
.+| |+++|.|+..... ..+.
T Consensus 109 -------~~F-------------------------------------------i~lsH~P~~~~~~----------~~~~ 128 (195)
T cd08166 109 -------KYF-------------------------------------------IMLSHVPLLAEGG----------QALK 128 (195)
T ss_pred -------Hhh-------------------------------------------eeeeccccccccc----------HHHH
Confidence 011 9999999987432 1556
Q ss_pred HHHHHcCccEEEeccccceeeee
Q 022359 159 SWFVRYKVDVVFAGHVHAYERSY 181 (298)
Q Consensus 159 ~l~~~~~v~lvlsGH~H~y~r~~ 181 (298)
.++.+++++++||||.|.+....
T Consensus 129 ~~~~~~~p~~Ifs~H~H~s~~~~ 151 (195)
T cd08166 129 HVVTDLDPDLIFSAHRHKSSIFM 151 (195)
T ss_pred HHHHhcCceEEEEcCccceeeEE
Confidence 77888999999999999987764
No 32
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.17 E-value=2.1e-10 Score=101.21 Aligned_cols=141 Identities=15% Similarity=0.086 Sum_probs=78.5
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCccCcCCCCccccccccccccccCcCCCC
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASK 81 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~~ 81 (298)
+.+||+|+++||+++... ...++.+.+.++.+.+..|+++|+||||+..... ....+....+.-.. .
T Consensus 78 ~~~pDlVli~GD~~d~~~------~~~~~~~~~~L~~L~~~~pv~~V~GNHD~~~~~~--~~~~~~~~l~~~gi-----~ 144 (271)
T PRK11340 78 EQKPDLILLGGDYVLFDM------PLNFSAFSDVLSPLAECAPTFACFGNHDRPVGTE--KNHLIGETLKSAGI-----T 144 (271)
T ss_pred hcCCCEEEEccCcCCCCc------cccHHHHHHHHHHHhhcCCEEEecCCCCcccCcc--chHHHHHHHHhcCc-----E
Confidence 458999999999985221 1224556677777766789999999999842211 00001111111000 0
Q ss_pred CCCCceEEEEeCC--EEEEEEcCCCCCCCChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCCChHHHHHHHH
Q 022359 82 SSSPLWYAIRRAS--AHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFES 159 (298)
Q Consensus 82 ~~~~~~ys~~~g~--v~fi~ldt~~~~~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~ 159 (298)
-..+....+..++ +.+++++.... +. .. ..+.+++ ....|++.|.|-.- +
T Consensus 145 lL~n~~~~i~~~~~~i~i~G~~d~~~-~~--~~---~~~~~~~-----~~~~IlL~H~P~~~-----------------~ 196 (271)
T PRK11340 145 VLFNQATVIATPNRQFELVGTGDLWA-GQ--CK---PPPASEA-----NLPRLVLAHNPDSK-----------------E 196 (271)
T ss_pred EeeCCeEEEeeCCcEEEEEEecchhc-cC--CC---hhHhcCC-----CCCeEEEEcCCChh-----------------H
Confidence 1112333444433 56677763211 11 00 1112221 33679999998542 1
Q ss_pred HHHHcCccEEEeccccceeeeeee
Q 022359 160 WFVRYKVDVVFAGHVHAYERSYRI 183 (298)
Q Consensus 160 l~~~~~v~lvlsGH~H~y~r~~~~ 183 (298)
.+.+.++|++||||+|.-|-..|.
T Consensus 197 ~~~~~~~dL~lsGHTHGGQi~lP~ 220 (271)
T PRK11340 197 VMRDEPWDLMLCGHTHGGQLRVPL 220 (271)
T ss_pred hhccCCCCEEEeccccCCeEEccc
Confidence 134568999999999998876553
No 33
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=99.08 E-value=8.3e-10 Score=103.51 Aligned_cols=170 Identities=16% Similarity=0.213 Sum_probs=103.2
Q ss_pred CCcEEEEcCcccccCCCcccccchhH---HHHHHHHHHhcCCCceEEccCCCCccCcCCCCc--ccc-------cccc--
Q 022359 4 GAQTVLFLGDLSYADRYQFIDVGVRW---DSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGE--VVP-------FKSY-- 69 (298)
Q Consensus 4 ~pd~vl~~GD~~y~~~~~~~~~~~~~---~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~--~~~-------~~~~-- 69 (298)
++|+|+++||++-.+.+.... +... ....+.+......+|++++.||||....+.+.. ... |..+
T Consensus 210 ~iD~I~wTGD~~~H~~w~~t~-~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N~F~~~~~~~~~~~~wly~~~~~ 288 (577)
T KOG3770|consen 210 DIDYIIWTGDNVAHDVWAQTE-EENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVNLFAPGSVPKRHSQLWLYKHLAG 288 (577)
T ss_pred CCCEEEEeCCCCcccchhhhH-HHHHHHHHHHHHHHHHhCCCCceeeecccCCCCcHhhcCCCCCcchhhhhHHHHHHHh
Confidence 489999999999776553211 1111 223344455566899999999999853221110 000 0111
Q ss_pred -ccccccCcCCCCCCCCceEEEE-eCCEEEEEEcCCCCC----------CCChHHHHHHHHHHhhcccCCCCeEEEEeec
Q 022359 70 -LHRYPTPHLASKSSSPLWYAIR-RASAHIIVLSSYSPF----------VKYTPQWEWLREELKKVDREKTPWLIVLMHV 137 (298)
Q Consensus 70 -~~~f~~p~~~~~~~~~~~ys~~-~g~v~fi~ldt~~~~----------~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~ 137 (298)
...|.-+....+...+.+|... +++.++|.||+...+ .....|++|+..+|.++. ++...+-+++|.
T Consensus 289 ~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~~L~~ae-~~GekVhil~HI 367 (577)
T KOG3770|consen 289 AWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVDQLQEAE-SAGEKVHILGHI 367 (577)
T ss_pred hhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCchHHhhHHHHHHHHHH-hcCCEEEEEEee
Confidence 1222222222334556777755 489999999996432 234678999999999974 445578889999
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHHHc--CccEEEeccccceeee
Q 022359 138 PIYNSNEAHFMEGESMRAAFESWFVRY--KVDVVFAGHVHAYERS 180 (298)
Q Consensus 138 P~~~~~~~~~~~~~~~~~~l~~l~~~~--~v~lvlsGH~H~y~r~ 180 (298)
|+-...-. ......+-.++.++ -+...|.||.|.-+-.
T Consensus 368 PpG~~~c~-----~~ws~~f~~iv~r~~~tI~gqf~GH~h~d~f~ 407 (577)
T KOG3770|consen 368 PPGDGVCL-----EGWSINFYRIVNRFRSTIAGQFYGHTHIDEFR 407 (577)
T ss_pred CCCCcchh-----hhhhHHHHHHHHHHHHhhhhhccccCcceeEE
Confidence 98752211 12334455555555 2446699999986644
No 34
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=99.07 E-value=3.6e-10 Score=92.78 Aligned_cols=51 Identities=29% Similarity=0.505 Sum_probs=33.8
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhc-------CCCceEEccCCCCcc
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA-------AYQPWIWSAGNHEIE 55 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~-------~~~P~~~v~GNHD~~ 55 (298)
+.+||+|+++||++...... . ...|.+..+.+..+. ..+|++.++||||..
T Consensus 43 ~~~pd~vi~lGDl~d~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g 100 (171)
T cd07384 43 RLKPDVVLFLGDLFDGGRIA--D-SEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIG 100 (171)
T ss_pred hcCCCEEEEeccccCCcEeC--C-HHHHHHHHHHHHHHhcccccccCCceEEEECCccccC
Confidence 46899999999999643221 1 234544443333332 268999999999985
No 35
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=99.05 E-value=1.7e-08 Score=88.76 Aligned_cols=170 Identities=24% Similarity=0.337 Sum_probs=88.2
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHh-cCCCceEEccCCCCccCcCCCCccccccccccc--ccc---
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERS-AAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHR--YPT--- 75 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~-~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~--f~~--- 75 (298)
+++||+|+++||++++... .+ .-..+.+.+.|. ..++||.+++||||-... +... ....+... +.+
T Consensus 98 sE~PDlVVfTGD~i~g~~t--~D---a~~sl~kAvaP~I~~~IPwA~~lGNHDdes~--ltr~-ql~~~i~~lP~s~~~v 169 (379)
T KOG1432|consen 98 SEKPDLVVFTGDNIFGHST--QD---AATSLMKAVAPAIDRKIPWAAVLGNHDDESD--LTRL-QLMKFISKLPYSLSQV 169 (379)
T ss_pred ccCCCEEEEeCCccccccc--Hh---HHHHHHHHhhhHhhcCCCeEEEecccccccc--cCHH-HHHHHHhcCCCccccC
Confidence 5799999999999976332 22 123456777775 458999999999997421 1100 01111110 001
Q ss_pred -CcCCCCC--CCCceEEEEe-C----------CEEEEEEcCCCC---------CC-CChHHHHHHHHHHhhc---ccCCC
Q 022359 76 -PHLASKS--SSPLWYAIRR-A----------SAHIIVLSSYSP---------FV-KYTPQWEWLREELKKV---DREKT 128 (298)
Q Consensus 76 -p~~~~~~--~~~~~ys~~~-g----------~v~fi~ldt~~~---------~~-~~~~Q~~wL~~~L~~~---~~~~~ 128 (298)
|..+... .+-..|-..+ + -..+.+||+... |+ ....|+.||+.+-.+. +..-.
T Consensus 170 ~p~dg~~~~~~g~gnyn~~i~~~~ds~~~~~sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~ 249 (379)
T KOG1432|consen 170 NPPDGHMYIIDGFGNYNLQIEGAIDSELENKSVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYN 249 (379)
T ss_pred CCcccceeeeecccceEEEeccCCCcccccCceeeEEEEecCCcccccccccCccchhhhhHHHHhhhhhhhhcccCccC
Confidence 1111100 0001121111 1 124556666421 11 2367999998887331 11122
Q ss_pred C-eEEEEeecccccCCC--CC------CCCC---hHHHHHHHHHHH-HcCccEEEeccccceee
Q 022359 129 P-WLIVLMHVPIYNSNE--AH------FMEG---ESMRAAFESWFV-RYKVDVVFAGHVHAYER 179 (298)
Q Consensus 129 ~-~~iv~~H~P~~~~~~--~~------~~~~---~~~~~~l~~l~~-~~~v~lvlsGH~H~y~r 179 (298)
| .=+++.|.|+..... .. ..++ ......+...|. +.+|++|++||+|.-.-
T Consensus 250 P~p~La~~HIP~~E~~~~~~~tp~~g~~~E~~~~~~~~sg~~~~L~~r~~Vk~vf~GHdHvNDf 313 (379)
T KOG1432|consen 250 PQPGLAFFHIPLPEFLELESKTPLIGVFQEGVSASKHNSGFLTTLVNRGNVKGVFCGHDHVNDF 313 (379)
T ss_pred CCCceEEEEcccHHHhhccCCCcccceeeccccccccccHHHHHHHhccCcceEEeccccccce
Confidence 3 457888999743211 10 0011 112234445555 78999999999997544
No 36
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.03 E-value=1.9e-09 Score=85.01 Aligned_cols=49 Identities=16% Similarity=0.098 Sum_probs=32.8
Q ss_pred eEEEEeecccccCCCCCCCCChHHHHHHHHHHHHcCccEEEecccccee
Q 022359 130 WLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYE 178 (298)
Q Consensus 130 ~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~ 178 (298)
..|+++|.|++............-.+.+.+++++.+++++|+||+|...
T Consensus 69 ~~ilv~H~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~ 117 (135)
T cd07379 69 TDILVTHGPPYGHLDLVSSGQRVGCEELLNRVQRVRPKLHVFGHIHEGY 117 (135)
T ss_pred CEEEEECCCCCcCccccccCcccCCHHHHHHHHHHCCcEEEEcCcCCcC
Confidence 4688889998765432111011113466777788899999999999874
No 37
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=99.00 E-value=7.3e-09 Score=82.92 Aligned_cols=164 Identities=19% Similarity=0.181 Sum_probs=90.0
Q ss_pred CcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCccCcCCCCccccccccccccccCcCCCCCCC
Q 022359 5 AQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSS 84 (298)
Q Consensus 5 pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~ 84 (298)
-|.|++.||+......++. .+=++++..+ ...-+.+.||||++.. .... ..+. +|..- ...
T Consensus 44 eDiVllpGDiSWaM~l~ea------~~Dl~~i~~L--PG~K~m~rGNHDYWw~-s~sk------l~n~--lp~~l--~~~ 104 (230)
T COG1768 44 EDIVLLPGDISWAMRLEEA------EEDLRFIGDL--PGTKYMIRGNHDYWWS-SISK------LNNA--LPPIL--FYL 104 (230)
T ss_pred hhEEEecccchhheechhh------hhhhhhhhcC--CCcEEEEecCCccccc-hHHH------HHhh--cCchH--hhh
Confidence 3789999999987665322 1112333332 2235779999999743 2111 1110 11100 000
Q ss_pred CceEEEEeCCEEEEEEc---CC-CCCCCChHH--------HHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCCChH
Q 022359 85 PLWYAIRRASAHIIVLS---SY-SPFVKYTPQ--------WEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGES 152 (298)
Q Consensus 85 ~~~ys~~~g~v~fi~ld---t~-~~~~~~~~Q--------~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~ 152 (298)
+. .|.++++.+++.- |. .++....+| ..-|+..+.++-+++....|||.|.|+++.....
T Consensus 105 n~--~f~l~n~aI~G~RgW~s~~~~~e~~te~Deki~~RE~~RLrlsa~a~l~k~~~~fivM~HYPP~s~~~t~------ 176 (230)
T COG1768 105 NN--GFELLNYAIVGVRGWDSPSFDSEPLTEQDEKIFLREIGRLRLSADAALPKGVSKFIVMTHYPPFSDDGTP------ 176 (230)
T ss_pred cc--ceeEeeEEEEEeecccCCCCCcCccchhHHHHHHHHHHHHHHHHHHhcccCcCeEEEEEecCCCCCCCCC------
Confidence 11 2445555454432 22 223334444 2333332222223455678999999999875432
Q ss_pred HHHHHHHHHHHcCccEEEeccccceeeeeeecCceeeccCCccccCCCCCCCEEEEeCC
Q 022359 153 MRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGD 211 (298)
Q Consensus 153 ~~~~l~~l~~~~~v~lvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~g~~~iv~G~ 211 (298)
..+.+++++++|+.++.||.|--.|-.+ + .+ +-.|+.|+++.+
T Consensus 177 --~~~sevlee~rv~~~lyGHlHgv~~p~~--~------~s------~v~Gi~y~Lvaa 219 (230)
T COG1768 177 --GPFSEVLEEGRVSKCLYGHLHGVPRPNI--G------FS------NVRGIEYMLVAA 219 (230)
T ss_pred --cchHHHHhhcceeeEEeeeccCCCCCCC--C------cc------cccCceEEEEec
Confidence 2456778899999999999998877432 1 11 235777877754
No 38
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=98.99 E-value=2.1e-09 Score=98.07 Aligned_cols=175 Identities=20% Similarity=0.217 Sum_probs=109.4
Q ss_pred CCCCcEEEEcCcccccCCCcccc-----------------cchhHHHHHHH---------HHHhcCCCceEEccCCCCcc
Q 022359 2 ESGAQTVLFLGDLSYADRYQFID-----------------VGVRWDSWGRF---------VERSAAYQPWIWSAGNHEIE 55 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~-----------------~~~~~~~~~~~---------~~~~~~~~P~~~v~GNHD~~ 55 (298)
+.+|||+||+||.+|.++....+ .....+.|... ++......||++.+-.||..
T Consensus 166 ~~~~D~viH~GDyIYeyg~~~~~~~~~~~~~~~~~~~~~~ei~TLddYR~rya~y~~D~nLqaahA~~Pwi~~WDDHEv~ 245 (522)
T COG3540 166 KEEPDFVIHLGDYIYEYGPIPDEVSLNSWKNVVVTQHKSKEIETLDDYRGRYAYYKTDENLQAAHAAFPWIVQWDDHEVA 245 (522)
T ss_pred hcCCCEEEEcCCeeeccCCcccccccccccccccCCCCCcceeeHHHHhhHHhhhcccHHHHHhhccCCEEEEecccccc
Confidence 56899999999999998764111 01112333322 23334568999999999996
Q ss_pred CcCCCCccc--------ccc-----cccccc-ccCcCCCC--CCCCceEEEEeCC-EEEEEEcCCCCC---------C--
Q 022359 56 YMTYMGEVV--------PFK-----SYLHRY-PTPHLASK--SSSPLWYAIRRAS-AHIIVLSSYSPF---------V-- 107 (298)
Q Consensus 56 ~~~~~~~~~--------~~~-----~~~~~f-~~p~~~~~--~~~~~~ys~~~g~-v~fi~ldt~~~~---------~-- 107 (298)
++-..+..+ .+. +++..+ .||...+. .....|-+|.+|+ +.|.+||+..-- .
T Consensus 246 NN~~~~~~~nD~~~~~k~~~~r~a~A~qAyyE~mPiR~~~~p~~~~lYR~~tyG~La~~~~LDtR~YR~dqp~~dg~~~~ 325 (522)
T COG3540 246 NNWSNSIDENDSRYDEKDFVLRAAAARQAYYEHMPIRYSSLPTDGRLYRSFTYGPLADLFVLDTRSYRTDQPCGDGNPPN 325 (522)
T ss_pred ccccccccccCCCCChHHHHHHHHHHHHHHHHhCccccccCCccceeeeeeccccccceeeeehhhhccccccCCCCcch
Confidence 431111111 110 111111 35654322 1246788999997 588899984210 0
Q ss_pred -----------CChHHHHHHHHHHhhcccCCCCeEEEEeecccccC----CC---------CCCCCChHHHHHHHHHHHH
Q 022359 108 -----------KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNS----NE---------AHFMEGESMRAAFESWFVR 163 (298)
Q Consensus 108 -----------~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~----~~---------~~~~~~~~~~~~l~~l~~~ 163 (298)
.+++|.+||+..|.+ ++..|.|+..-.|+-.. .. ..+.+...-|++|..++..
T Consensus 326 ~q~~~~~~~~mlG~~QeqWLk~~L~~---SkatWnVia~q~~~~~~~~d~~~a~~~~~a~~D~wdGy~~~RerLl~fi~~ 402 (522)
T COG3540 326 CQAVAGSAATMLGEQQEQWLKRGLGA---SKATWNVIAQQMPLGLVVFDGSPATEGQEANADGWDGYPAGRERLLRFIAD 402 (522)
T ss_pred hhhhhCccccchhhHHHHHHHhhhhh---cchhhhhhhhhcceeEeecCCCccccCccccccCcCCCcccHHHHHHHHHh
Confidence 147899999999998 67789999888886321 10 0111223458899999998
Q ss_pred cCcc--EEEeccccceee
Q 022359 164 YKVD--VVFAGHVHAYER 179 (298)
Q Consensus 164 ~~v~--lvlsGH~H~y~r 179 (298)
.++. ++|+|.+|...-
T Consensus 403 ~~~~N~V~LtgDvH~~wA 420 (522)
T COG3540 403 RKIRNTVVLTGDVHYSWA 420 (522)
T ss_pred cCCCCcEEEechhHHHHH
Confidence 8765 999999998543
No 39
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.97 E-value=4.8e-09 Score=84.32 Aligned_cols=75 Identities=24% Similarity=0.283 Sum_probs=49.9
Q ss_pred CeEEEEeecccccCCCCCCCCChHHHHHHHHHHHHcCccEEEeccccceeeeeeecCceeeccCCccccCCCCCCCEEEE
Q 022359 129 PWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYIT 208 (298)
Q Consensus 129 ~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~g~~~iv 208 (298)
...|++.|.+++.... ..+.+..++...+++++++||.|..+... .+++.++.
T Consensus 81 ~~~i~~~H~~~~~~~~--------~~~~~~~~~~~~~~~~~~~GH~H~~~~~~-------------------~~~~~~~~ 133 (156)
T PF12850_consen 81 GFKILLSHGHPYDVQW--------DPAELREILSRENVDLVLHGHTHRPQVFK-------------------IGGIHVIN 133 (156)
T ss_dssp TEEEEEESSTSSSSTT--------THHHHHHHHHHTTSSEEEESSSSSEEEEE-------------------ETTEEEEE
T ss_pred CCeEEEECCCCccccc--------ChhhhhhhhcccCCCEEEcCCcccceEEE-------------------ECCEEEEE
Confidence 4678888877665321 12345677789999999999999987764 24567888
Q ss_pred eCCCCCCCCCCCCCCCCCCCCcceeeCcccEEEEEEec
Q 022359 209 VGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKN 246 (298)
Q Consensus 209 ~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~ 246 (298)
.|+-+.... .. ..+|+.+++.+
T Consensus 134 ~Gs~~~~~~---------------~~-~~~~~i~~~~~ 155 (156)
T PF12850_consen 134 PGSIGGPRH---------------GD-QSGYAILDIED 155 (156)
T ss_dssp E-GSSS-SS---------------SS-SEEEEEEEETT
T ss_pred CCcCCCCCC---------------CC-CCEEEEEEEec
Confidence 887554321 01 45899998854
No 40
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=98.96 E-value=2.2e-09 Score=86.81 Aligned_cols=51 Identities=22% Similarity=0.381 Sum_probs=33.6
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHh-c--CCCceEEccCCCCcc
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERS-A--AYQPWIWSAGNHEIE 55 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~-~--~~~P~~~v~GNHD~~ 55 (298)
+.+||+|+++||++...... . ...|..+...+..+ . ...|++.++||||..
T Consensus 36 ~~~pd~vv~~GDl~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 36 LLQPDVVFVLGDLFDEGKWS--T-DEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIG 89 (156)
T ss_pred hcCCCEEEECCCCCCCCccC--C-HHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcC
Confidence 46899999999999653221 1 23454444333333 2 257999999999973
No 41
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.93 E-value=1.9e-09 Score=89.27 Aligned_cols=32 Identities=34% Similarity=0.571 Sum_probs=25.1
Q ss_pred EEEeecccccCCCCCCCCChHHHHHHHHHHHHcCccEEEeccccceeeee
Q 022359 132 IVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSY 181 (298)
Q Consensus 132 iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~ 181 (298)
|++.|.|.+. +..+.+++++||||+|.-++..
T Consensus 129 ilL~H~P~~~------------------~~~~~~~dl~lSGHtHgGqi~~ 160 (193)
T cd08164 129 ILLTHVPLYK------------------IFLEGKPGLILTGHDHEGCDYQ 160 (193)
T ss_pred EEEEccccee------------------ccccCCCCEEEeCccCCCeEEE
Confidence 8889999764 2224578999999999988875
No 42
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=98.76 E-value=3.7e-08 Score=87.01 Aligned_cols=47 Identities=19% Similarity=0.182 Sum_probs=37.9
Q ss_pred CCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCcc
Q 022359 3 SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 55 (298)
Q Consensus 3 ~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 55 (298)
..||+|+++||++.... ......+.+.++++.+..+++++.||||+.
T Consensus 72 ~~~DlivltGD~~~~~~------~~~~~~~~~~L~~L~~~~gv~av~GNHd~~ 118 (284)
T COG1408 72 ELPDLIVLTGDYVDGDR------PPGVAALALFLAKLKAPLGVFAVLGNHDYG 118 (284)
T ss_pred cCCCEEEEEeeeecCCC------CCCHHHHHHHHHhhhccCCEEEEecccccc
Confidence 46799999999996411 233467788888898899999999999985
No 43
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.76 E-value=1.1e-07 Score=81.49 Aligned_cols=52 Identities=21% Similarity=0.117 Sum_probs=34.6
Q ss_pred CCeEEEEeecccccCCCCC-------------CCCChHHHHHHHHHHHHcCccEEEeccccceee
Q 022359 128 TPWLIVLMHVPIYNSNEAH-------------FMEGESMRAAFESWFVRYKVDVVFAGHVHAYER 179 (298)
Q Consensus 128 ~~~~iv~~H~P~~~~~~~~-------------~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r 179 (298)
..-.|++.|.++...+... ..+.+.+.+++..+-.+-.+++|++||.|.--|
T Consensus 146 ~~~~VliaH~~~~G~g~~~~~~cg~d~~~~~~~~G~~~l~~ai~~~~~~~~~~l~~fGH~H~~l~ 210 (238)
T cd07397 146 DLPLILLAHNGPSGLGSDAEDPCGRDWKPPGGDWGDPDLALAISQIQQGRQVPLVVFGHMHHRLR 210 (238)
T ss_pred CCCeEEEeCcCCcCCCcccccccccccCCcCCCCCCHHHHHHHHHHhccCCCCEEEeCCccCccc
Confidence 3346889999986554110 113466777776665445689999999998644
No 44
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.75 E-value=4.9e-08 Score=76.35 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=32.3
Q ss_pred EEEEeecccccCCCCCCCCChHHHHHHHHHHHHcCccEEEeccccceeeee
Q 022359 131 LIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSY 181 (298)
Q Consensus 131 ~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~ 181 (298)
.|+++|+|++...... .....-.+.+.+++.+++++++|+||+|......
T Consensus 58 ~Ilv~H~pp~~~~~~~-~~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~~ 107 (129)
T cd07403 58 DILLTHAPPAGIGDGE-DFAHRGFEAFLDFIDRFRPKLFIHGHTHLNYGYQ 107 (129)
T ss_pred CEEEECCCCCcCcCcc-cccccCHHHHHHHHHHHCCcEEEEcCcCCCcCcc
Confidence 4778888876433211 0001124567788888999999999999765543
No 45
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=98.74 E-value=4.4e-08 Score=81.74 Aligned_cols=157 Identities=20% Similarity=0.255 Sum_probs=72.3
Q ss_pred CCCcEEEEcCcccccCCCcccccchhHH-----------------------HHHHHHHHhc-CCCceEEccCCCCccCcC
Q 022359 3 SGAQTVLFLGDLSYADRYQFIDVGVRWD-----------------------SWGRFVERSA-AYQPWIWSAGNHEIEYMT 58 (298)
Q Consensus 3 ~~pd~vl~~GD~~y~~~~~~~~~~~~~~-----------------------~~~~~~~~~~-~~~P~~~v~GNHD~~~~~ 58 (298)
..||+|+++||+.-...- ...|. .+.+++..+. ..+|.+++|||||...
T Consensus 31 ~~~D~~v~~G~~~~~~a~-----~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~~L~~~~~p~~~vPG~~Dap~-- 103 (255)
T PF14582_consen 31 KGPDAVVFVGDLLKAEAR-----SDEYERAQEEQREPDKSEINEEECYDSEALDKFFRILGELGVPVFVVPGNMDAPE-- 103 (255)
T ss_dssp HT-SEEEEES-SS-TCHH-----HHHHHHHHHTT----THHHHHHHHHHHHHHHHHHHHHHCC-SEEEEE--TTS-SH--
T ss_pred cCCCEEEEeccccccchh-----hhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHHHHHhcCCcEEEecCCCCchH--
Confidence 379999999999843211 33344 1113333332 3789999999999721
Q ss_pred CCCccccc-cccccccccCcCCCCCCCCceEEEEeCCEEEEEEcCCCCC-CC--------ChHHHHHHHHHHhhcccCCC
Q 022359 59 YMGEVVPF-KSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPF-VK--------YTPQWEWLREELKKVDREKT 128 (298)
Q Consensus 59 ~~~~~~~~-~~~~~~f~~p~~~~~~~~~~~ys~~~g~v~fi~ldt~~~~-~~--------~~~Q~~wL~~~L~~~~~~~~ 128 (298)
+. -+ ..|......|.. ..... -+.+--|...|+++-.+..- .. ......|..+.|.++ +.
T Consensus 104 -~~---~lr~a~~~e~v~p~~--~~vH~-sf~~~~g~y~v~G~GGeI~~~~~~~~~~LrYP~weaey~lk~l~el---k~ 173 (255)
T PF14582_consen 104 -RF---FLREAYNAEIVTPHI--HNVHE-SFFFWKGEYLVAGMGGEITDDQREEEFKLRYPAWEAEYSLKFLREL---KD 173 (255)
T ss_dssp -HH---HHHHHHHCCCC-TTE--EE-CT-CEEEETTTEEEEEE-SEEESSS-BCSSS-EEEHHHHHHHHGGGGGC---TS
T ss_pred -HH---HHHHHhccceeccce--eeeee-eecccCCcEEEEecCccccCCCccccccccchHHHHHHHHHHHHhc---cc
Confidence 00 00 111111111110 00000 12222245777777653210 00 112344555666664 23
Q ss_pred CeEEEEeeccc-ccCCCCCCCCChHHHHHHHHHHHHcCccEEEeccccceeeee
Q 022359 129 PWLIVLMHVPI-YNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSY 181 (298)
Q Consensus 129 ~~~iv~~H~P~-~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~ 181 (298)
.-.|+.+|.|| ...+..+ .-.+.+..++++++++++||||.|--.-..
T Consensus 174 ~r~IlLfhtpPd~~kg~~h-----~GS~~V~dlIk~~~P~ivl~Ghihe~~~~e 222 (255)
T PF14582_consen 174 YRKILLFHTPPDLHKGLIH-----VGSAAVRDLIKTYNPDIVLCGHIHESHGKE 222 (255)
T ss_dssp SEEEEEESS-BTBCTCTBT-----TSBHHHHHHHHHH--SEEEE-SSS-EE--E
T ss_pred ccEEEEEecCCccCCCccc-----ccHHHHHHHHHhcCCcEEEecccccchhhH
Confidence 35677899999 4333222 123578889999999999999999765443
No 46
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=98.70 E-value=4e-08 Score=85.23 Aligned_cols=52 Identities=17% Similarity=0.030 Sum_probs=33.2
Q ss_pred CCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcC-CCceEEccCCCCcc
Q 022359 3 SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-YQPWIWSAGNHEIE 55 (298)
Q Consensus 3 ~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~~v~GNHD~~ 55 (298)
.+||.|+++||++..-...... ........+.++.+.. .+|++.++||||..
T Consensus 31 ~~~d~l~i~GDl~d~~~g~~~~-~~~~~~~~~~l~~l~~~g~~v~~v~GNHD~~ 83 (241)
T PRK05340 31 RQADALYILGDLFEAWIGDDDP-SPFAREIAAALKALSDSGVPCYFMHGNRDFL 83 (241)
T ss_pred ccCCEEEEccceeccccccCcC-CHHHHHHHHHHHHHHHcCCeEEEEeCCCchh
Confidence 5799999999999531110000 1122344555666654 48999999999974
No 47
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=98.70 E-value=1.3e-07 Score=81.19 Aligned_cols=142 Identities=20% Similarity=0.223 Sum_probs=83.9
Q ss_pred CCCCcEEEEcCcccccCCCcc-----------------cccchhHHHHHHH-----HHHhcCCCceEEccCCCCccCcCC
Q 022359 2 ESGAQTVLFLGDLSYADRYQF-----------------IDVGVRWDSWGRF-----VERSAAYQPWIWSAGNHEIEYMTY 59 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~-----------------~~~~~~~~~~~~~-----~~~~~~~~P~~~v~GNHD~~~~~~ 59 (298)
+.+||++|++||.+|.+.... .........+... ++.+.+.+|++.++.+||+..+..
T Consensus 27 ~~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~~p~~~~~~~~~p~~~iwDDHDi~~n~~ 106 (228)
T cd07389 27 EEDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERYRQYRSDPDLQRLLAQVPTIGIWDDHDIGDNWG 106 (228)
T ss_pred ccCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHHHHHcCCHHHHHHhhcCCEEEeccccccccccc
Confidence 578999999999999986321 1101111112211 344556789999999999953221
Q ss_pred CCc-------c------ccccccccccccCcCCCC--CCCCceEEEEeCCE-EEEEEcCCCCCCCChHHHHHHHHHHhhc
Q 022359 60 MGE-------V------VPFKSYLHRYPTPHLASK--SSSPLWYAIRRASA-HIIVLSSYSPFVKYTPQWEWLREELKKV 123 (298)
Q Consensus 60 ~~~-------~------~~~~~~~~~f~~p~~~~~--~~~~~~ys~~~g~v-~fi~ldt~~~~~~~~~Q~~wL~~~L~~~ 123 (298)
... . .....|......+..... .....|+++.+|.. .|++||+...-
T Consensus 107 ~~~~~~~~~~~~~~~~~~a~~ay~e~~~~~~~~~~~~~~~~~y~~~~~G~~~~~~~lD~R~~R----------------- 169 (228)
T cd07389 107 GDGAWVQDSPVFYARKAAARQAYLEFQPVRNPSPRRGGRGGIYRSFRFGDLVDLILLDTRTYR----------------- 169 (228)
T ss_pred cccccccCcchHHHHHHHHHHHHHHHcCCCCCCccCCCCceEEEEEecCCcceEEEEeccccc-----------------
Confidence 100 0 001123333333222211 34568899999986 99999996541
Q ss_pred ccCCCCeEEEEeecccccCCCCCCCCChHHHHHHHHHHHHc--CccEEEeccccceeeee
Q 022359 124 DREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRY--KVDVVFAGHVHAYERSY 181 (298)
Q Consensus 124 ~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~--~v~lvlsGH~H~y~r~~ 181 (298)
..+......++++..++.+. +--++|||++|...-..
T Consensus 170 ---------------------d~W~~~~~er~~l~~~~~~~~~~~vv~lSGDvH~~~~~~ 208 (228)
T cd07389 170 ---------------------DSWDGYPAERERLLDLLAKRKIKNVVFLSGDVHLAEASD 208 (228)
T ss_pred ---------------------ccccccHHHHHHHHHHHHHhCCCCeEEEecHHHHHHHhh
Confidence 12334455677777775554 33388999999866543
No 48
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.62 E-value=7.9e-07 Score=76.61 Aligned_cols=50 Identities=22% Similarity=0.202 Sum_probs=32.9
Q ss_pred CCcEEEEcCcccccCCCcccc-cchhHHHHHHHHHHhcC-CCceEEccCCCCcc
Q 022359 4 GAQTVLFLGDLSYADRYQFID-VGVRWDSWGRFVERSAA-YQPWIWSAGNHEIE 55 (298)
Q Consensus 4 ~pd~vl~~GD~~y~~~~~~~~-~~~~~~~~~~~~~~~~~-~~P~~~v~GNHD~~ 55 (298)
+||+|+++||++.. +...+ .....+.+.+.++.+.. ..|+++++||||..
T Consensus 30 ~~d~lii~GDi~d~--~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD~~ 81 (231)
T TIGR01854 30 KADALYILGDLFEA--WIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRDFL 81 (231)
T ss_pred cCCEEEEcCceecc--ccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCchh
Confidence 79999999999952 11000 01122344555666654 58999999999974
No 49
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.59 E-value=5.7e-07 Score=78.78 Aligned_cols=150 Identities=19% Similarity=0.215 Sum_probs=73.8
Q ss_pred CCCc-EEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCccCcCCCCccccccccccccccC-----
Q 022359 3 SGAQ-TVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTP----- 76 (298)
Q Consensus 3 ~~pd-~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p----- 76 (298)
.+|+ ++|.+||++....... ..+.....+.++.+ ..-+.++||||+..... .+....+....|
T Consensus 36 ~~~~~l~l~~GD~~~g~~~~~---~~~g~~~~~~l~~l---~~d~~~~GNHefd~g~~-----~l~~~~~~~~~~~L~aN 104 (257)
T cd07406 36 ENPNTLVLFSGDVLSPSLLST---ATKGKQMVPVLNAL---GVDLACFGNHEFDFGED-----QLQKRLGESKFPWLSSN 104 (257)
T ss_pred cCCCEEEEECCCccCCccchh---hcCCccHHHHHHhc---CCcEEeecccccccCHH-----HHHHHHhhCCCCEEEEE
Confidence 4567 8999999985432211 01112222333322 22366899999854321 011111000000
Q ss_pred ----cCCC-CCCCCceEEEEeCCEEE--EEEcCCCCC------C---CChHHHHHHHHHHhhcccCCCCeEEEEeecccc
Q 022359 77 ----HLAS-KSSSPLWYAIRRASAHI--IVLSSYSPF------V---KYTPQWEWLREELKKVDREKTPWLIVLMHVPIY 140 (298)
Q Consensus 77 ----~~~~-~~~~~~~ys~~~g~v~f--i~ldt~~~~------~---~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~ 140 (298)
..+. ...-+.|..++.+++++ +++.+.... . ....-.+.+++.+++..+.+.+.+|++.|-+..
T Consensus 105 i~~~~~~~~~~~~~~~~i~~~~g~kIgviG~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~~~~~~~D~iVvl~H~g~~ 184 (257)
T cd07406 105 VFDATGGGPLPNGKESAIIERAGVKIGLLGLVEEEWLETLTIDPEYVRYRDYVETARELVDELREQGADLIIALTHMRLP 184 (257)
T ss_pred EEECCCCcccCCCCCeEEEEECCeEEEEEEEecccccccccCCCCcceEcCHHHHHHHHHHHHHhCCCCEEEEEeccCch
Confidence 0000 00124567778887655 445443211 0 011223334444433323567899999998742
Q ss_pred cCCCCCCCCChHHHHHHHHHHHH-cCccEEEecccccee
Q 022359 141 NSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAYE 178 (298)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvlsGH~H~y~ 178 (298)
. .. .+.++ .++|++|+||.|..+
T Consensus 185 ~--------d~-------~la~~~~~iD~IlgGH~H~~~ 208 (257)
T cd07406 185 N--------DK-------RLAREVPEIDLILGGHDHEYI 208 (257)
T ss_pred h--------hH-------HHHHhCCCCceEEecccceeE
Confidence 1 11 22233 489999999999876
No 50
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.51 E-value=7.7e-07 Score=71.64 Aligned_cols=73 Identities=21% Similarity=0.180 Sum_probs=44.8
Q ss_pred eEEEEeecccccCCCCCCCCChHHHHHHHHHHHHcCccEEEeccccceeeeeeecCceeeccCCccccCCCCCCCEEEEe
Q 022359 130 WLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITV 209 (298)
Q Consensus 130 ~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~g~~~iv~ 209 (298)
..|++.|.++...... .. . ..++.+.++|++++||+|...... .+++.++-.
T Consensus 76 ~~i~v~Hg~~~~~~~~-------~~-~-~~~~~~~~~d~vi~GHtH~~~~~~-------------------~~~~~~inp 127 (155)
T cd00841 76 KRIFLTHGHLYGVKNG-------LD-R-LYLAKEGGADVVLYGHTHIPVIEK-------------------IGGVLLLNP 127 (155)
T ss_pred EEEEEECCcccccccc-------hh-h-hhhhhhcCCCEEEECcccCCccEE-------------------ECCEEEEeC
Confidence 4577778776543211 01 1 445667789999999999865432 245667777
Q ss_pred CCCCCCCCCCCCCCCCCCCCcceeeCcccEEEEEEec
Q 022359 210 GDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKN 246 (298)
Q Consensus 210 G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~ 246 (298)
|+.|.+.. ....+|+.+++.+
T Consensus 128 Gs~~~~~~----------------~~~~~~~i~~~~~ 148 (155)
T cd00841 128 GSLSLPRG----------------GGPPTYAILEIDD 148 (155)
T ss_pred CCccCcCC----------------CCCCeEEEEEecC
Confidence 77665311 1134788888854
No 51
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.51 E-value=3.3e-05 Score=63.78 Aligned_cols=80 Identities=15% Similarity=0.230 Sum_probs=47.3
Q ss_pred HHHHHHHHcCccEEEeccccceeeeeeecCceeeccCCccccCCCCCCCEEEEeCCCCCCCCCCCCCCCCCCCCcceeeC
Q 022359 156 AFESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREA 235 (298)
Q Consensus 156 ~l~~l~~~~~v~lvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~ 235 (298)
.+..++++.++|++++||+|...... .++..++=-|+.|.+... +. ...
T Consensus 97 ~~~~~~~~~~~dvii~GHTH~p~~~~-------------------~~g~~viNPGSv~~~~~~--------~~----~~~ 145 (178)
T cd07394 97 SLAALQRQLDVDILISGHTHKFEAFE-------------------HEGKFFINPGSATGAFSP--------LD----PNV 145 (178)
T ss_pred HHHHHHHhcCCCEEEECCCCcceEEE-------------------ECCEEEEECCCCCCCCCC--------CC----CCC
Confidence 44555667889999999999765432 134556666766543210 00 011
Q ss_pred cccEEEEEEecCceEEEEEEEcCCCceeeeeeE
Q 022359 236 SYGHSTLEIKNRTHAFYHWNRNDDGKKVATDSF 268 (298)
Q Consensus 236 ~~Gf~~l~v~~~~~l~~~~~~~~dg~~~~~D~f 268 (298)
...|+.|++.+. .+.++++.-.++++ .+.+|
T Consensus 146 ~~syail~~~~~-~~~~~~~~l~~~~~-~~~~~ 176 (178)
T cd07394 146 IPSFVLMDIQGS-KVVTYVYQLIDGEV-KVEKI 176 (178)
T ss_pred CCeEEEEEecCC-eEEEEEEEEECCcE-EEEEe
Confidence 246899998544 46777776555543 34444
No 52
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=98.50 E-value=4.6e-06 Score=69.86 Aligned_cols=150 Identities=18% Similarity=0.182 Sum_probs=85.9
Q ss_pred CCCcEEEEcCcccccCCCcccccchhHHHHHHH--HHHhc-CCCceEEccCCCCccCcCCCCccccccccccccccCcCC
Q 022359 3 SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRF--VERSA-AYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLA 79 (298)
Q Consensus 3 ~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~--~~~~~-~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~ 79 (298)
.++|+++++||++|..-.+.. .-.+. ++.+. ..+|++++|||-|-..- .. .........
T Consensus 29 ~~~D~lviaGDlt~~~~~~~~-------~~~~~~~~e~l~~~~~~v~avpGNcD~~~v--------~~-~l~~~~~~v-- 90 (226)
T COG2129 29 IRADLLVIAGDLTYFHFGPKE-------VAEELNKLEALKELGIPVLAVPGNCDPPEV--------ID-VLKNAGVNV-- 90 (226)
T ss_pred ccCCEEEEecceehhhcCchH-------HHHhhhHHHHHHhcCCeEEEEcCCCChHHH--------HH-HHHhccccc--
Confidence 479999999999944322211 11111 44454 47899999999886311 00 000011100
Q ss_pred CCCCCCceEEEEeCCEEEEEEcCCC--CCC----CChHH-HHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCCC--
Q 022359 80 SKSSSPLWYAIRRASAHIIVLSSYS--PFV----KYTPQ-WEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEG-- 150 (298)
Q Consensus 80 ~~~~~~~~ys~~~g~v~fi~ldt~~--~~~----~~~~Q-~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~-- 150 (298)
. + -+..++++.|+++--.. ++. ..+++ +.-|+.-+.+.+ ..-.|+.+|.||+..... ...+
T Consensus 91 ---~-~--~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~~---~~~~Il~~HaPP~gt~~d-~~~g~~ 160 (226)
T COG2129 91 ---H-G--RVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKAD---NPVNILLTHAPPYGTLLD-TPSGYV 160 (226)
T ss_pred ---c-c--ceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhccc---CcceEEEecCCCCCcccc-CCCCcc
Confidence 0 1 25677888888854321 121 12222 334444444431 112299999999976543 2222
Q ss_pred hHHHHHHHHHHHHcCccEEEeccccceeee
Q 022359 151 ESMRAAFESWFVRYKVDVVFAGHVHAYERS 180 (298)
Q Consensus 151 ~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~ 180 (298)
..-.+.+..++++.++-+.+|||.|-+.-.
T Consensus 161 hvGS~~vr~~ieefqP~l~i~GHIHEs~G~ 190 (226)
T COG2129 161 HVGSKAVRKLIEEFQPLLGLHGHIHESRGI 190 (226)
T ss_pred ccchHHHHHHHHHhCCceEEEeeecccccc
Confidence 223568889999999999999999985444
No 53
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.49 E-value=3.6e-07 Score=77.70 Aligned_cols=53 Identities=15% Similarity=0.048 Sum_probs=32.6
Q ss_pred CCCcEEEEcCcccccCCCcccccchhHHH-HHHHHHHhcCCCceEEccCCCCcc
Q 022359 3 SGAQTVLFLGDLSYADRYQFIDVGVRWDS-WGRFVERSAAYQPWIWSAGNHEIE 55 (298)
Q Consensus 3 ~~pd~vl~~GD~~y~~~~~~~~~~~~~~~-~~~~~~~~~~~~P~~~v~GNHD~~ 55 (298)
.+|+.|+++||++..-............. +....+......+++.++||||..
T Consensus 29 ~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~v~GNHD~~ 82 (217)
T cd07398 29 GEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLADRGTRVYYVPGNHDFL 82 (217)
T ss_pred CCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHHHCCCeEEEECCCchHH
Confidence 48999999999995321111110111111 234444455678999999999984
No 54
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=98.47 E-value=7.7e-07 Score=77.60 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=27.7
Q ss_pred CCCCeEEEEeecccccCCCCCCCCChHHHHHHHHHHHHcCccEEEeccccceee
Q 022359 126 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYER 179 (298)
Q Consensus 126 ~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r 179 (298)
.+.+.+|++.|-|... .+.+.+.+ .++|++|+||.|..+.
T Consensus 169 ~~~D~vIvl~H~g~~~------------~~~la~~~--~giDlvlggH~H~~~~ 208 (252)
T cd00845 169 EGADVIILLSHLGLDD------------DEELAEEV--PGIDVILGGHTHHLLE 208 (252)
T ss_pred CCCCEEEEEeccCccc------------hHHHHhcC--CCccEEEcCCcCcccC
Confidence 5677999999977543 11222212 5899999999998654
No 55
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.42 E-value=3.4e-06 Score=74.71 Aligned_cols=86 Identities=17% Similarity=0.217 Sum_probs=47.0
Q ss_pred ceEEEEeC-CEEEEEEcCCCC----CC-----------CChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCC
Q 022359 86 LWYAIRRA-SAHIIVLSSYSP----FV-----------KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFME 149 (298)
Q Consensus 86 ~~ys~~~g-~v~fi~ldt~~~----~~-----------~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~ 149 (298)
.|..++.+ ++++-++--... +. ...+..++.-++|++ .+.+.+|+++|-+........ ..
T Consensus 129 ~~~i~~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~---~~~D~IIvl~H~g~~~~~~~~-~~ 204 (277)
T cd07410 129 PYVILERDVGVKVGIIGLTTPQIPNWEKPNLIGGLKFTDPVETAKKYVPKLRA---EGADVVVVLAHGGFERDLEES-LT 204 (277)
T ss_pred CEEEEEecCCCEEEEEecCCcccccccCcccCCCcEEcCHHHHHHHHHHHHHH---cCCCEEEEEecCCcCCCcccc-cC
Confidence 45667788 876665543211 10 011223333344443 467899999998876532110 11
Q ss_pred ChHHHHHHHHHHHH-cCccEEEecccccee
Q 022359 150 GESMRAAFESWFVR-YKVDVVFAGHVHAYE 178 (298)
Q Consensus 150 ~~~~~~~l~~l~~~-~~v~lvlsGH~H~y~ 178 (298)
... ....|.++ .++|++|+||+|...
T Consensus 205 ~~~---~~~~la~~~~~vD~IlgGHsH~~~ 231 (277)
T cd07410 205 GEN---AAYELAEEVPGIDAILTGHQHRRF 231 (277)
T ss_pred Ccc---HHHHHHhcCCCCcEEEeCCCcccc
Confidence 111 12234444 589999999999754
No 56
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.34 E-value=1.5e-05 Score=69.85 Aligned_cols=162 Identities=17% Similarity=0.131 Sum_probs=86.2
Q ss_pred CCCcEEEEcCcccccCCCcccc------cchhHHHHHHHHHHhc-CCCceEEccCCCCccCcCCCCcccccccccccccc
Q 022359 3 SGAQTVLFLGDLSYADRYQFID------VGVRWDSWGRFVERSA-AYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPT 75 (298)
Q Consensus 3 ~~pd~vl~~GD~~y~~~~~~~~------~~~~~~~~~~~~~~~~-~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~ 75 (298)
.++|+||++||..-.......+ ....+..|.+.++... ..+|+++|.||||.. . ...+ .+...|..
T Consensus 27 ~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~fi~GNHE~~-~-~l~~-----l~~gg~v~ 99 (262)
T cd00844 27 TKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIFIGGNHEAS-N-YLWE-----LPYGGWVA 99 (262)
T ss_pred CCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEEECCCCCCH-H-HHHh-----hcCCCeec
Confidence 3699999999986322111100 0012334545554433 457889999999962 1 0000 00011111
Q ss_pred CcCCCCCCCCce-----EEEEeCCEEEEEEcCCCC---CC--------CChHHHHHHH-------HHHhhcccCCCCeEE
Q 022359 76 PHLASKSSSPLW-----YAIRRASAHIIVLSSYSP---FV--------KYTPQWEWLR-------EELKKVDREKTPWLI 132 (298)
Q Consensus 76 p~~~~~~~~~~~-----ys~~~g~v~fi~ldt~~~---~~--------~~~~Q~~wL~-------~~L~~~~~~~~~~~i 132 (298)
| +.+ ..+++++++|..|..... +. ..+.++..+. +.|... +.+.-|
T Consensus 100 ~--------Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~~~~~~~~~~t~~~~rs~y~~r~~~~~kl~~~---~~~vDI 168 (262)
T cd00844 100 P--------NIYYLGYAGVVNFGGLRIAGLSGIYKSHDYRKGHFERPPYSEDTKRSAYHVRNIEVFKLKQL---KQPIDI 168 (262)
T ss_pred C--------cEEEecCCCEEEECCeEEEEecccccccccccccccCCCCCHHHHHHhhhhhHHHHHHHHhc---CCCCcE
Confidence 1 222 246678999999876321 11 1122222211 112221 123459
Q ss_pred EEeecccccCCCCCCCC---------------ChHHHHHHHHHHHHcCccEEEeccccc-eeeeee
Q 022359 133 VLMHVPIYNSNEAHFME---------------GESMRAAFESWFVRYKVDVVFAGHVHA-YERSYR 182 (298)
Q Consensus 133 v~~H~P~~~~~~~~~~~---------------~~~~~~~l~~l~~~~~v~lvlsGH~H~-y~r~~~ 182 (298)
+++|.||.......... +..-...+..++.+.++..+|+||.|. |++..|
T Consensus 169 lLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~lkPryhf~gH~H~~f~~~~~ 234 (262)
T cd00844 169 FLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHLKPRYWFSAHLHVKFAALVP 234 (262)
T ss_pred EEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHHHHHhCCCEEEEecCCcccceecC
Confidence 99999997654321100 011134677889999999999999999 676654
No 57
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.34 E-value=1.2e-05 Score=70.80 Aligned_cols=78 Identities=18% Similarity=0.158 Sum_probs=42.8
Q ss_pred ceEEEEeCCEE--EEEEcCCCCCC--C--------ChHHHHHHHHHHhhcc-cCCCCeEEEEeecccccCCCCCCCCChH
Q 022359 86 LWYAIRRASAH--IIVLSSYSPFV--K--------YTPQWEWLREELKKVD-REKTPWLIVLMHVPIYNSNEAHFMEGES 152 (298)
Q Consensus 86 ~~ys~~~g~v~--fi~ldt~~~~~--~--------~~~Q~~wL~~~L~~~~-~~~~~~~iv~~H~P~~~~~~~~~~~~~~ 152 (298)
.|..++.++++ ||++.+..... . .....+.+++.+++.. ..+.+.+|++.|-+... ..
T Consensus 129 ~~~i~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iI~l~H~g~~~--------~~- 199 (264)
T cd07411 129 PYRIKEVGGVKIGVIGQTFPYVPIANPPRFTPGLTFGIREEELQEVVVKLRREEGVDVVVLLSHNGLPV--------DV- 199 (264)
T ss_pred CEEEEEECCEEEEEEEeccCCcccccCcCCCCCcEECCHHHHHHHHHHHHHHhCCCCEEEEEecCCchh--------hH-
Confidence 35556777754 55555431100 0 1223444544433321 24678999999987431 11
Q ss_pred HHHHHHHHHHH-cCccEEEecccccee
Q 022359 153 MRAAFESWFVR-YKVDVVFAGHVHAYE 178 (298)
Q Consensus 153 ~~~~l~~l~~~-~~v~lvlsGH~H~y~ 178 (298)
.+.++ .++|++|+||.|...
T Consensus 200 ------~la~~~~~iDlilgGH~H~~~ 220 (264)
T cd07411 200 ------ELAERVPGIDVILSGHTHERT 220 (264)
T ss_pred ------HHHhcCCCCcEEEeCcccccc
Confidence 12223 579999999999753
No 58
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=98.30 E-value=1.7e-05 Score=73.53 Aligned_cols=105 Identities=15% Similarity=0.123 Sum_probs=55.4
Q ss_pred eEEEEeecccccCCCCCCCCChHHHHHHHHHHHHcCccEEEeccccceeeeeeecCceeeccCCccccCCCCCCCEEEE-
Q 022359 130 WLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYIT- 208 (298)
Q Consensus 130 ~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~g~~~iv- 208 (298)
+.|++.|......... ... -..++ ....|+|+.||.|.-+.. |... +....+|+
T Consensus 202 fnIlv~Hq~~~~~~~~-----~~i---pe~ll-p~~fDYValGHiH~~~~~-p~~~---------------~~~~~~V~y 256 (405)
T TIGR00583 202 FNLLVLHQNHAAHTST-----SFL---PESFI-PDFFDLVIWGHEHECLPD-PVYN---------------PSDGFYVLQ 256 (405)
T ss_pred eEEEEeCceecCCCCc-----ccC---chhhh-hccCcEEEeccccccccc-cccc---------------CCCCceEEE
Confidence 5788999876322111 001 12333 456999999999986543 2110 11122333
Q ss_pred eCCCCCCCCCCCCCCCCCCCCcceeeCcccEEEEEEecCceEEEEEEEcCCCceeeeeeEEEEe
Q 022359 209 VGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWNRNDDGKKVATDSFILHN 272 (298)
Q Consensus 209 ~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~~~~l~~~~~~~~dg~~~~~D~f~i~~ 272 (298)
+|+ +... .+. ......-|+..|++.. ....++++.-.........+..+.+
T Consensus 257 pGS---~v~t--Sf~-------e~E~~~Kgv~lVeI~~-~~~~~~~IpL~~vRpf~~~~i~l~~ 307 (405)
T TIGR00583 257 PGS---TVAT--SLT-------PGEALPKHVFILNIKG-RKFASKPIPLQTVRPFVMKEILLDK 307 (405)
T ss_pred CCC---cccc--ccc-------ccccCCCEEEEEEEcC-CeeEEEEeeCCCcccEEEEEEEhhh
Confidence 443 2210 111 1111346899999964 4577888766544445566666664
No 59
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.20 E-value=1.4e-05 Score=71.21 Aligned_cols=65 Identities=22% Similarity=0.193 Sum_probs=37.1
Q ss_pred HHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCCChHHHHHHHHHHHH--cCccEEEeccccceee
Q 022359 113 WEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR--YKVDVVFAGHVHAYER 179 (298)
Q Consensus 113 ~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~--~~v~lvlsGH~H~y~r 179 (298)
.+-+++.+++.+..+.+.+|++.|-.......... ..........++.+ .++|++|+||+|....
T Consensus 177 ~e~~~~~v~~lr~~~~D~IIvL~H~G~~~~~~~~~--~~~~~~~~~~l~~~~~~~iD~IlgGHsH~~~~ 243 (288)
T cd07412 177 VEAINAVAPELKAGGVDAIVVLAHEGGSTKGGDDT--CSAASGPIADIVNRLDPDVDVVFAGHTHQAYN 243 (288)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCCCcc--ccccChhHHHHHhhcCCCCCEEEeCccCcccc
Confidence 34455544444325678999999987654322110 00111122334444 4799999999998754
No 60
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.20 E-value=1.5e-05 Score=64.51 Aligned_cols=36 Identities=22% Similarity=0.140 Sum_probs=25.7
Q ss_pred CCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCc
Q 022359 4 GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEI 54 (298)
Q Consensus 4 ~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~ 54 (298)
++|.|+++||++ . ....+.++.+ ..|++.|+||||.
T Consensus 28 ~~d~ii~~GD~~--~-----------~~~~~~l~~~--~~~~~~V~GN~D~ 63 (158)
T TIGR00040 28 NVDLVIHAGDLT--S-----------PFVLKEFEDL--AAKVIAVRGNNDG 63 (158)
T ss_pred CCCEEEEcCCCC--C-----------HHHHHHHHHh--CCceEEEccCCCc
Confidence 799999999997 1 1222333332 4589999999996
No 61
>PRK09453 phosphodiesterase; Provisional
Probab=98.18 E-value=9.5e-05 Score=61.20 Aligned_cols=52 Identities=23% Similarity=0.258 Sum_probs=29.4
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCcc
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 55 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 55 (298)
+.++|.|+++||++..............++..+.++.+ ..|++.++||||..
T Consensus 25 ~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~--~~~v~~V~GNhD~~ 76 (182)
T PRK09453 25 QSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAY--ADKIIAVRGNCDSE 76 (182)
T ss_pred hcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhc--CCceEEEccCCcch
Confidence 35799999999998532110000000112233333322 35899999999963
No 62
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.09 E-value=0.0002 Score=62.43 Aligned_cols=151 Identities=17% Similarity=0.152 Sum_probs=77.5
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCccCcCCCCccccccccccccccCcCCCC
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASK 81 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~~ 81 (298)
+.++|+++..||++...... . ....+.+.. ..+-++ +.|||+++.. +...+-.-..+...|.+-..
T Consensus 27 ~~~~D~vi~NgEn~~gg~gl--~-----~~~~~~L~~--~G~D~i-TlGNH~fD~g----el~~~l~~~~~~l~~aN~~~ 92 (255)
T cd07382 27 EYKIDFVIANGENAAGGKGI--T-----PKIAKELLS--AGVDVI-TMGNHTWDKK----EILDFIDEEPRLLRPANYPP 92 (255)
T ss_pred HCCCCEEEECCccccCCCCC--C-----HHHHHHHHh--cCCCEE-EecccccCcc----hHHHHHhcCcCceEeeecCC
Confidence 45789999999998653111 1 222222222 244544 5599999643 11111000000011222111
Q ss_pred -CCCCceEEEEeCCEEEEEEcCCCC--CCCChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCCChHHHHHHH
Q 022359 82 -SSSPLWYAIRRASAHIIVLSSYSP--FVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFE 158 (298)
Q Consensus 82 -~~~~~~ys~~~g~v~fi~ldt~~~--~~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~ 158 (298)
.....|..++.+++++-+++-... ......-++-+++.+++.+ .+.+.+||.+|--.. .....+.
T Consensus 93 ~~pg~~~~i~~~~G~kIaVigl~g~~~~~~~~~P~~~~~~~v~~lk-~~~D~IIV~~H~g~t-----------sEk~ala 160 (255)
T cd07382 93 GTPGRGYGVVEVNGKKIAVINLMGRVFMPPLDNPFRAADELLEELK-EEADIIFVDFHAEAT-----------SEKIALG 160 (255)
T ss_pred CCCCCCeEEEEECCEEEEEEEEecccCCCcCCCHHHHHHHHHHHHh-cCCCEEEEEECCCCC-----------HHHHHHH
Confidence 112346777888877666554311 1122223445666666653 357799999997321 1112222
Q ss_pred HHHHHcCccEEEeccccceee
Q 022359 159 SWFVRYKVDVVFAGHVHAYER 179 (298)
Q Consensus 159 ~l~~~~~v~lvlsGH~H~y~r 179 (298)
. ...-+||+++.||+|...-
T Consensus 161 ~-~ldg~VdvIvGtHTHv~t~ 180 (255)
T cd07382 161 W-YLDGRVSAVVGTHTHVQTA 180 (255)
T ss_pred H-hCCCCceEEEeCCCCccCC
Confidence 1 2234699999999998633
No 63
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.08 E-value=2.4e-05 Score=68.47 Aligned_cols=46 Identities=13% Similarity=0.215 Sum_probs=30.1
Q ss_pred CCCCeEEEEeecccccCCCCCCCCChHHHHHHHHHHHH-cCccEEEeccccceeee
Q 022359 126 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAYERS 180 (298)
Q Consensus 126 ~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvlsGH~H~y~r~ 180 (298)
.+.+.+|++.|-+....... . .... +.++ .++|++|.||.|.....
T Consensus 170 ~~~D~iIvl~H~G~~~~~~~----~--~~~~---la~~~~giDvIigGH~H~~~~~ 216 (257)
T cd07408 170 KGADVIVALGHLGVDRTSSP----W--TSTE---LAANVTGIDLIIDGHSHTTIEI 216 (257)
T ss_pred CCCCEEEEEeCcCcCCCCCC----c--cHHH---HHHhCCCceEEEeCCCcccccC
Confidence 56789999999887654211 0 1112 2223 48999999999987543
No 64
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.05 E-value=2.8e-05 Score=69.01 Aligned_cols=78 Identities=19% Similarity=0.201 Sum_probs=45.4
Q ss_pred ceEEEEeCCEEE--EEEcCCCC--CC------CChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCCChHHHH
Q 022359 86 LWYAIRRASAHI--IVLSSYSP--FV------KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRA 155 (298)
Q Consensus 86 ~~ys~~~g~v~f--i~ldt~~~--~~------~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~ 155 (298)
.|..++.+++++ |++-+... +. ......+.+++.+++.+..+.+.+|++.|-.... ..
T Consensus 131 p~~i~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~~~~D~II~l~H~G~~~------------d~ 198 (281)
T cd07409 131 PSTILTVGGEKIGIIGYTTPDTTELSSPGGKVKFLDEIEAAQKEADKLKAQGVNKIIALSHSGYEV------------DK 198 (281)
T ss_pred CeEEEEECCEEEEEEEEecCcccccccCCCceEECCHHHHHHHHHHHHHhcCCCEEEEEeccCchh------------HH
Confidence 355677787655 44443211 00 0122345566666655334578999999976321 11
Q ss_pred HHHHHHHH-cCccEEEecccccee
Q 022359 156 AFESWFVR-YKVDVVFAGHVHAYE 178 (298)
Q Consensus 156 ~l~~l~~~-~~v~lvlsGH~H~y~ 178 (298)
.+.++ .++|++|+||.|...
T Consensus 199 ---~la~~~~giD~IiggH~H~~~ 219 (281)
T cd07409 199 ---EIARKVPGVDVIVGGHSHTFL 219 (281)
T ss_pred ---HHHHcCCCCcEEEeCCcCccc
Confidence 22333 589999999999964
No 65
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=98.04 E-value=7.3e-05 Score=64.90 Aligned_cols=53 Identities=17% Similarity=0.188 Sum_probs=35.2
Q ss_pred CCCcEEEEcCcccccCCC-ccc-------ccchhHHHHHHHHHHhcCCCceEEccCCCCcc
Q 022359 3 SGAQTVLFLGDLSYADRY-QFI-------DVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 55 (298)
Q Consensus 3 ~~pd~vl~~GD~~y~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 55 (298)
.++|.|+++||++..... ... .....+..+.++++.+...+|+++++||||..
T Consensus 34 ~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~v~~ipGNHD~~ 94 (243)
T cd07386 34 SRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPSHIKIIIIPGNHDAV 94 (243)
T ss_pred cCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcccCCeEEEeCCCCCcc
Confidence 467999999999964211 000 00112344556667776779999999999984
No 66
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=98.02 E-value=2.3e-05 Score=72.88 Aligned_cols=50 Identities=26% Similarity=0.209 Sum_probs=36.5
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhc-CCCceEEccCCCCcc
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA-AYQPWIWSAGNHEIE 55 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~v~GNHD~~ 55 (298)
+.++||||++||+......+. ..-..+.++++.+. ..+|+++++||||..
T Consensus 38 ~~~vD~vliAGDlFd~~~Ps~----~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~ 88 (390)
T COG0420 38 EEKVDFVLIAGDLFDTNNPSP----RALKLFLEALRRLKDAGIPVVVIAGNHDSP 88 (390)
T ss_pred HccCCEEEEccccccCCCCCH----HHHHHHHHHHHHhccCCCcEEEecCCCCch
Confidence 468899999999997644332 22244566666664 479999999999984
No 67
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=97.97 E-value=0.00022 Score=63.22 Aligned_cols=53 Identities=19% Similarity=0.496 Sum_probs=33.8
Q ss_pred HHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCCChHHHHHHHHHHHHc-Ccc-EEEeccccce
Q 022359 114 EWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRY-KVD-VVFAGHVHAY 177 (298)
Q Consensus 114 ~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~v~-lvlsGH~H~y 177 (298)
+|+.+.|++ .+.+.+|+++|-....... ..+....+.++. ++| ++|+||+|..
T Consensus 177 ~~v~~~l~~---~~~DvIIvlsH~G~~~d~~--------~~~~~~~la~~~~~id~~Ii~GHsH~~ 231 (282)
T cd07407 177 PWFQDAINN---EDVDLILVLGHMPVRDDAE--------FKVLHDAIRKIFPDTPIQFLGGHSHVR 231 (282)
T ss_pred HHHHHHHHh---cCCCEEEEEeCCCCCCCcc--------HHHHHHHHHHhCCCCCEEEEeCCcccc
Confidence 477777774 4678999999987654311 111112233343 567 7999999975
No 68
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=97.96 E-value=5.6e-05 Score=67.20 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=30.9
Q ss_pred CCCCeEEEEeecccccCCCCCCCCChHHHHHHHHHHHHcCccEEEeccccceee
Q 022359 126 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYER 179 (298)
Q Consensus 126 ~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r 179 (298)
.+.+.+|++.|-......... ........+.+.+...++|++|.||+|....
T Consensus 172 ~~~D~VI~lsH~G~~~~~~~~--~~~~~~~~lA~~~~~~giD~IigGHsH~~~~ 223 (285)
T cd07405 172 EKPDIVIAATHMGHYDNGEHG--SNAPGDVEMARALPAGGLDLIVGGHSQDPVC 223 (285)
T ss_pred cCCCEEEEEecccccCCcccc--ccCchHHHHHHhcCCCCCCEEEeCCCCcccc
Confidence 467899999999875432110 0001112233323235899999999998653
No 69
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=97.95 E-value=0.00063 Score=59.56 Aligned_cols=150 Identities=15% Similarity=0.071 Sum_probs=80.3
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCccCcCCCCccccccccccccccCcCCCC
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASK 81 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~~ 81 (298)
+.++||++..||++-..-. .. ....+.+. ...+-++.+ |||+++...............+....|..
T Consensus 28 ~~~~D~vIaNgEn~~gG~G--i~-----~~~~~~L~--~~GvDviT~-GNH~~Dkge~~~~i~~~~~~lrpanyp~~--- 94 (266)
T TIGR00282 28 KYQADLVIANGENTTHGKG--LT-----LKIYEFLK--QSGVNYITM-GNHTWFQKLILDVVINQKDLVRPLNFDTS--- 94 (266)
T ss_pred hCCCCEEEEcCcccCCCCC--CC-----HHHHHHHH--hcCCCEEEc-cchhccCcHHHHHHhccccccccCCCCCC---
Confidence 4578999999999854211 11 12122222 235666655 99999643100000000111111122211
Q ss_pred CCCCceEEEEeCCEEEEEEcCCC--CCCC--ChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCCChHHHHHH
Q 022359 82 SSSPLWYAIRRASAHIIVLSSYS--PFVK--YTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAF 157 (298)
Q Consensus 82 ~~~~~~ys~~~g~v~fi~ldt~~--~~~~--~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l 157 (298)
..+..|..+..++.++-+++-.. .... ...-++-+++.+++.+ .+.+.+||.+|--. .. .+..
T Consensus 95 ~pG~g~~i~~~nG~kiaVinl~G~~fm~~~~~~~Pf~~~d~~i~~lk-~~~d~IIVd~Haea-----------ts-EK~a 161 (266)
T TIGR00282 95 FAGKGSLVFEFNGAKIAVTNLQGTSVNLPFKTTNPFKVLKELINMLK-KDCDLIFVDFHAET-----------TS-EKNA 161 (266)
T ss_pred CCCCCcEEEEECCEEEEEEECCCcccCCccccCCHHHHHHHHHHhhh-cCCCEEEEEeCCCC-----------HH-HHHH
Confidence 12234666777887777776432 1111 1223344555555543 34679999999532 11 2344
Q ss_pred HHHHHHcCccEEEeccccce
Q 022359 158 ESWFVRYKVDVVFAGHVHAY 177 (298)
Q Consensus 158 ~~l~~~~~v~lvlsGH~H~y 177 (298)
...+.+.+|++|+.-|+|..
T Consensus 162 ~~~~ldg~vsaVvGtHtHV~ 181 (266)
T TIGR00282 162 FGMAFDGYVTAVVGTHTHVP 181 (266)
T ss_pred HHHHhCCCccEEEeCCCCCC
Confidence 56677889999999999985
No 70
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=97.93 E-value=2.7e-05 Score=71.19 Aligned_cols=89 Identities=16% Similarity=0.170 Sum_probs=55.6
Q ss_pred CCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhc---CCCceEEccCCCCccCcCCCCccccccccccccccCcCC
Q 022359 3 SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA---AYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLA 79 (298)
Q Consensus 3 ~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~---~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~ 79 (298)
.+||.++++||++.+..+.+ .++|.+..+.+..+. ..+|++.+|||||..+....-. ..-..|...|.
T Consensus 92 lkPdvvffLGDLfDeG~~~~---~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDIGf~~~~~~-~~i~Rfe~~fg----- 162 (410)
T KOG3662|consen 92 LKPDVVFFLGDLFDEGQWAG---DEEFKKRYERFKKIFGRKGNIKVIYIAGNHDIGFGNELIP-EWIDRFESVFG----- 162 (410)
T ss_pred cCCCEEEEeccccccCccCC---hHHHHHHHHHHHHhhCCCCCCeeEEeCCccccccccccch-hHHHHHHHhhc-----
Confidence 58999999999996443332 456654444444432 3689999999999965422110 00122322221
Q ss_pred CCCCCCceEEEEeCCEEEEEEcCCCC
Q 022359 80 SKSSSPLWYAIRRASAHIIVLSSYSP 105 (298)
Q Consensus 80 ~~~~~~~~ys~~~g~v~fi~ldt~~~ 105 (298)
+..-+|+++++.|+++|++.-
T Consensus 163 -----~~~r~f~v~~~tf~~~d~~~l 183 (410)
T KOG3662|consen 163 -----PTERRFDVGNLTFVMFDSNAL 183 (410)
T ss_pred -----chhhhhccCCceeEEeeehhh
Confidence 123468999999999999754
No 71
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.71 E-value=0.00045 Score=72.81 Aligned_cols=86 Identities=16% Similarity=0.170 Sum_probs=46.5
Q ss_pred ceEEEEeCCEE--EEEEcCCCC--C------C--CChHHHHHHHHHHhhcc-cCCCCeEEEEeecccccCCCCCCCCChH
Q 022359 86 LWYAIRRASAH--IIVLSSYSP--F------V--KYTPQWEWLREELKKVD-REKTPWLIVLMHVPIYNSNEAHFMEGES 152 (298)
Q Consensus 86 ~~ys~~~g~v~--fi~ldt~~~--~------~--~~~~Q~~wL~~~L~~~~-~~~~~~~iv~~H~P~~~~~~~~~~~~~~ 152 (298)
.|..++.++++ ||++-+... + . ......+.+++..++.+ ..+.+.+|++.|......... ..
T Consensus 784 py~I~e~~G~kIgiiGltt~~~~~~~~p~~~~~l~f~d~~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~d~~~--~~--- 858 (1163)
T PRK09419 784 PYILVEVNGKKVGFIGLTTPETAYKTSPGNVKNLEFKDPAEAAKKWVKELKEKEKVDAIIALTHLGSNQDRTT--GE--- 858 (1163)
T ss_pred CEEEEEECCEEEEEEEecccccccccCCCCcCCcEEcCHHHHHHHHHHHHHhhcCCCEEEEEecCCccccccc--cc---
Confidence 45566777754 455544211 0 0 01122333444444332 256789999999987543211 11
Q ss_pred HHHHHHHHHHH-cCccEEEecccccee
Q 022359 153 MRAAFESWFVR-YKVDVVFAGHVHAYE 178 (298)
Q Consensus 153 ~~~~l~~l~~~-~~v~lvlsGH~H~y~ 178 (298)
.....|.++ -++|++|.||+|..-
T Consensus 859 --~~~~~lA~~v~gIDvIigGHsH~~~ 883 (1163)
T PRK09419 859 --ITGLELAKKVKGVDAIISAHTHTLV 883 (1163)
T ss_pred --cHHHHHHHhCCCCCEEEeCCCCccc
Confidence 122344444 379999999999754
No 72
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.70 E-value=4.2e-05 Score=64.82 Aligned_cols=41 Identities=32% Similarity=0.253 Sum_probs=31.4
Q ss_pred HHHHHHHHHHcCccEEEeccccceeeeeeecCceeeccCCccccCCCCCCCEEEEeCCCC
Q 022359 154 RAAFESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGDGG 213 (298)
Q Consensus 154 ~~~l~~l~~~~~v~lvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~g~~~iv~G~gG 213 (298)
.+.....+.+++|+.+++||+|.-.... ..++.|++.|+.-
T Consensus 176 ~~~v~~~~~~~~vd~vI~GH~Hr~ai~~-------------------i~~~~yi~lGdW~ 216 (237)
T COG2908 176 PAAVADEARRHGVDGVIHGHTHRPAIHN-------------------IPGITYINLGDWV 216 (237)
T ss_pred HHHHHHHHHHcCCCEEEecCcccHhhcc-------------------CCCceEEecCcch
Confidence 4566777889999999999999754432 2457899999765
No 73
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=97.61 E-value=9.1e-05 Score=62.74 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=20.5
Q ss_pred HHHHHHHHcCccEEEeccccceeee
Q 022359 156 AFESWFVRYKVDVVFAGHVHAYERS 180 (298)
Q Consensus 156 ~l~~l~~~~~v~lvlsGH~H~y~r~ 180 (298)
.+..++...+.++++.||+|.-...
T Consensus 158 ~~~~~l~~~~~~~iv~GHTh~~~~~ 182 (208)
T cd07425 158 HLDKVLERLGAKRMVVGHTPQEGGI 182 (208)
T ss_pred HHHHHHHHcCCCeEEEcCeeeecCc
Confidence 4677888899999999999986443
No 74
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=97.61 E-value=0.00033 Score=67.58 Aligned_cols=158 Identities=16% Similarity=0.103 Sum_probs=80.5
Q ss_pred CCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCccCcCCCCccccccccccccccC---cC--
Q 022359 4 GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTP---HL-- 78 (298)
Q Consensus 4 ~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p---~~-- 78 (298)
+..++|.+||++.++..... ......-.+.+..+ -.=..++||||+.+..+. +..+......| .|
T Consensus 69 ~~~llld~GD~~~G~~l~~~--~~~g~~~~~~mN~m---~yDa~tiGNHEFd~g~~~-----l~~~~~~~~fp~l~aNv~ 138 (517)
T COG0737 69 KNVLLLDAGDLIQGSPLSDY--LTKGEPTVDLLNAL---GYDAMTLGNHEFDYGLEA-----LARLLDEAKFPVLSANVY 138 (517)
T ss_pred CCeEEEeCCcccCCcccccc--ccCCChHHHHHhhc---CCcEEeecccccccCHHH-----HHHHHhccCCceEEeeeE
Confidence 34679999999966443321 11222223333322 123558999999753210 11111111111 00
Q ss_pred ----CCCCCCCceEEEEeCCE--EEEEEcCCC--CCC--------CChHHHHHHHHHHhhcccCCCCeEEEEeecccccC
Q 022359 79 ----ASKSSSPLWYAIRRASA--HIIVLSSYS--PFV--------KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNS 142 (298)
Q Consensus 79 ----~~~~~~~~~ys~~~g~v--~fi~ldt~~--~~~--------~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~ 142 (298)
.....-+.|.-++.+++ -+|++.+.. .+. ......+++++.+.+.++.+.+.+|++.|-+....
T Consensus 139 ~~~~~~~~~~~Py~I~~~~g~KIgiIG~~~~~~~~~~~~~~~~~~~f~d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~d 218 (517)
T COG0737 139 DKNSTGPPFFKPYAIKEVGGVKIGIIGLTTPTIPTWEKPNAIEGVTFRDPIEAAKKYIPELKGEGVDVIIALSHLGIEDD 218 (517)
T ss_pred ecCCCCccCcCCeEEEecCCeEEEEEEecCCcccccccccccCCcEEcCHHHHHHHHHHHHHhcCCCEEEEEeccCcCcc
Confidence 00112246777888875 456665421 111 12344566666666654334789999999988765
Q ss_pred CCCCCCCChHHHHHHHHHHHHcCccEEEeccccce
Q 022359 143 NEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAY 177 (298)
Q Consensus 143 ~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y 177 (298)
...... ......... .++|+++.||.|.+
T Consensus 219 ~~~~~~-~~~~~~~~~-----~~iD~i~~GH~H~~ 247 (517)
T COG0737 219 LELASE-VPGDVDVAV-----PGIDLIIGGHSHTV 247 (517)
T ss_pred cccccc-ccccccccc-----cCcceEeccCCccc
Confidence 432111 000000000 34999999999975
No 75
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=97.59 E-value=0.00038 Score=67.66 Aligned_cols=48 Identities=21% Similarity=0.255 Sum_probs=29.5
Q ss_pred CCCCeEEEEeecccccCCCCCCCCChHHHHHHHHHHHHc---CccEEEecccccee
Q 022359 126 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRY---KVDVVFAGHVHAYE 178 (298)
Q Consensus 126 ~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~---~v~lvlsGH~H~y~ 178 (298)
.+.+.+|++.|-......... .... .-..|.++. +||++|.||+|..-
T Consensus 208 ~~~D~IV~LsH~G~~~~~~~~-~~~~----~d~~la~~~~~~~IDvIlgGHsH~~~ 258 (551)
T PRK09558 208 EKPDVIIALTHMGHYDDGEHG-SNAP----GDVEMARSLPAGGLDMIVGGHSQDPV 258 (551)
T ss_pred cCCCEEEEEeccccccCCccC-CCCc----cHHHHHHhCCccCceEEEeCCCCccc
Confidence 467899999998875432110 0000 002334443 79999999999854
No 76
>PRK04036 DNA polymerase II small subunit; Validated
Probab=97.56 E-value=0.00058 Score=65.51 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=35.1
Q ss_pred CCCCcEEEEcCcccccCCCc-ccc-------cchhHHHHHHHHHHhcCCCceEEccCCCCcc
Q 022359 2 ESGAQTVLFLGDLSYADRYQ-FID-------VGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 55 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 55 (298)
+.+++.|+++||++...+.. ..+ ...+.+.+.++++.+...+|++++|||||..
T Consensus 282 ~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~~L~~L~~~i~V~~ipGNHD~~ 343 (504)
T PRK04036 282 ASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAEYLKQIPEDIKIIISPGNHDAV 343 (504)
T ss_pred hhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHHHHHhhhcCCeEEEecCCCcch
Confidence 45789999999999542211 100 0111234455666666778999999999974
No 77
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.54 E-value=0.00012 Score=63.87 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=34.0
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcC-C-CceEEccCCCCcc
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-Y-QPWIWSAGNHEIE 55 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~-~P~~~v~GNHD~~ 55 (298)
+.+||+||++||++.....+ ......+.+.++.+.. . +|+++++||||..
T Consensus 37 ~~~~D~lli~GDi~d~~~p~----~~~~~~~~~~l~~l~~~~~i~v~~i~GNHD~~ 88 (253)
T TIGR00619 37 AEQIDALLVAGDVFDTANPP----AEAQELFNAFFRNLSDANPIPIVVISGNHDSA 88 (253)
T ss_pred HcCCCEEEECCccCCCCCCC----HHHHHHHHHHHHHHHhcCCceEEEEccCCCCh
Confidence 45799999999999654321 1122334555555543 3 8999999999974
No 78
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.49 E-value=0.00059 Score=66.29 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=26.1
Q ss_pred CCCCeEEEEeecccccCCCCCCCCChHHHHHHHHHHHH-cCccEEEecccccee
Q 022359 126 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAYE 178 (298)
Q Consensus 126 ~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvlsGH~H~y~ 178 (298)
.+.+.+|++.|..... . ..|.++ .+||++|+||+|.+-
T Consensus 181 ~g~D~II~lsH~g~~~--------d-------~~la~~~~~iD~IigGHsH~~~ 219 (550)
T TIGR01530 181 QGINKIILLSHAGFEK--------N-------CEIAQKINDIDVIVSGDSHYLL 219 (550)
T ss_pred CCCCEEEEEecCCcHH--------H-------HHHHhcCCCCCEEEeCCCCccc
Confidence 4578999999975321 1 123333 389999999999964
No 79
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=97.44 E-value=0.0017 Score=56.62 Aligned_cols=152 Identities=11% Similarity=0.119 Sum_probs=81.4
Q ss_pred CCcEEEEcCcccccCCCccc--------------ccchhHHHHHHHHHHhcCCCceEEccCCCCccCcCCCCccccc-cc
Q 022359 4 GAQTVLFLGDLSYADRYQFI--------------DVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPF-KS 68 (298)
Q Consensus 4 ~pd~vl~~GD~~y~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~-~~ 68 (298)
+..-+|++||.+...+.... +.....+++.+++..+...+|+...|||||-.. .... ++.+ ..
T Consensus 42 ~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~l~~l~~~i~V~imPG~~Dp~~-~~lP-Qqplh~~ 119 (257)
T cd07387 42 SIVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAVKELDNFLSQLASSVPVDLMPGEFDPAN-HSLP-QQPLHRC 119 (257)
T ss_pred ceEEEEEECCcccccccccchhhhhhccccccchhhHHHHHHHHHHHHhhhcCCeEEECCCCCCccc-ccCC-CCCCCHH
Confidence 45579999999965432110 012223445566777778899999999999842 1111 1111 11
Q ss_pred cccccccCcCC----CCCCCCceEEEEeCCEEEEEEcCCC-----CCCCChHHHHHHHHHHhhcccCCCCeEEEEeeccc
Q 022359 69 YLHRYPTPHLA----SKSSSPLWYAIRRASAHIIVLSSYS-----PFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPI 139 (298)
Q Consensus 69 ~~~~f~~p~~~----~~~~~~~~ys~~~g~v~fi~ldt~~-----~~~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~ 139 (298)
+ | |... -....|. |.|++++++|++..... .+...+.-++.|+..|+-. |.-|
T Consensus 120 l---f--p~s~~~~~~~~vtNP-~~~~i~g~~vLgtsGqni~Di~ky~~~~~~l~~me~~L~wr------------HlaP 181 (257)
T cd07387 120 L---F--PKSSNYSTLNLVTNP-YEFSIDGVRVLGTSGQNVDDILKYSSLESRLDILERTLKWR------------HIAP 181 (257)
T ss_pred H---h--hcccccCCcEEeCCC-eEEEECCEEEEEECCCCHHHHHHhCCCCCHHHHHHHHHHhc------------ccCC
Confidence 1 1 1100 0011232 56899999999987643 1233345577788877751 2111
Q ss_pred -ccCCCCCCCCChHHHHHHHHHHHHcCccEEEeccccceeee
Q 022359 140 -YNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERS 180 (298)
Q Consensus 140 -~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~ 180 (298)
+...-+-+.- ..-.+++-+.-++++++||.|.|+-.
T Consensus 182 TaPDTL~~yP~-----~~~Dpfvi~~~PhVyf~Gnq~~f~t~ 218 (257)
T cd07387 182 TAPDTLWCYPF-----TDRDPFILEECPHVYFAGNQPKFGTK 218 (257)
T ss_pred CCCCccccccC-----CCCCceeecCCCCEEEeCCCcceeee
Confidence 1111100000 00012233445999999999998765
No 80
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=97.42 E-value=0.00049 Score=55.03 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=21.1
Q ss_pred HHHHHHHHHcCccEEEeccccc-eeee
Q 022359 155 AAFESWFVRYKVDVVFAGHVHA-YERS 180 (298)
Q Consensus 155 ~~l~~l~~~~~v~lvlsGH~H~-y~r~ 180 (298)
..+..++++.++...||||.|. |||.
T Consensus 100 ~~i~~l~~~lkPrYhf~gh~~~fyer~ 126 (150)
T cd07380 100 DLIAELAKKLKPRYHFAGLEGVFYERE 126 (150)
T ss_pred HHHHHHHHHcCCCeEeecCCCceEeec
Confidence 4666788888999999999995 6664
No 81
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.37 E-value=0.00026 Score=58.09 Aligned_cols=50 Identities=24% Similarity=0.254 Sum_probs=31.8
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCcc
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 55 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 55 (298)
+.+||.|+++||+++..... . ...+.. ..........+|++.++||||..
T Consensus 39 ~~~~d~lii~GDl~~~~~~~--~-~~~~~~-~~~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 39 EYGPERLIILGDLKHSFGGL--S-RQEFEE-VAFLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred hcCCCEEEEeCccccccccc--C-HHHHHH-HHHHHhccCCCeEEEEcccCccc
Confidence 46899999999999653321 1 111221 11233334578999999999974
No 82
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.33 E-value=0.0012 Score=59.52 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=26.4
Q ss_pred CCCCeEEEEeecccccCCCCCCCCChHHHHHHHHHHHH-cCccEEEecccccee
Q 022359 126 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAYE 178 (298)
Q Consensus 126 ~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvlsGH~H~y~ 178 (298)
.+.+.+|+++|-.-+. .. ..|.++ -++|++|.||+|..-
T Consensus 206 ~gvD~II~LsH~g~~~-------~d-------~~lA~~v~gIDvIigGHsH~~l 245 (313)
T cd08162 206 QGINKIILLSHLQQIS-------IE-------QALAALLSGVDVIIAGGSNTLL 245 (313)
T ss_pred CCCCEEEEEecccccc-------hH-------HHHHhcCCCCCEEEeCCCCccC
Confidence 4578999999973111 11 123444 389999999999864
No 83
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=97.32 E-value=0.00029 Score=65.75 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=32.7
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcC-CCceEEccCCCCcc
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-YQPWIWSAGNHEIE 55 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~~v~GNHD~~ 55 (298)
+.+||+||++||++.....+ ......+.+++..+.. .+|+++++||||..
T Consensus 37 ~~~~D~viIaGDifD~~~p~----~~a~~~~~~~l~~L~~~~~~v~~I~GNHD~~ 87 (407)
T PRK10966 37 EHQVDAIIVAGDIFDTGSPP----SYARELYNRFVVNLQQTGCQLVVLAGNHDSV 87 (407)
T ss_pred hcCCCEEEECCccccCCCCc----HHHHHHHHHHHHHHHhcCCcEEEEcCCCCCh
Confidence 46899999999999543211 1111223444444433 58999999999974
No 84
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=97.24 E-value=0.022 Score=46.59 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=20.0
Q ss_pred HHHHHHHHcCccEEEeccccceeeee
Q 022359 156 AFESWFVRYKVDVVFAGHVHAYERSY 181 (298)
Q Consensus 156 ~l~~l~~~~~v~lvlsGH~H~y~r~~ 181 (298)
.+..+.++.++|+++.||+|......
T Consensus 100 ~l~~la~~~~~Dvli~GHTH~p~~~~ 125 (172)
T COG0622 100 LLEYLAKELGADVLIFGHTHKPVAEK 125 (172)
T ss_pred HHHHHHHhcCCCEEEECCCCcccEEE
Confidence 45555667789999999999876654
No 85
>PHA02546 47 endonuclease subunit; Provisional
Probab=97.13 E-value=0.00067 Score=61.91 Aligned_cols=51 Identities=18% Similarity=0.063 Sum_probs=32.2
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHH-HHHHhc-CCCceEEccCCCCcc
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGR-FVERSA-AYQPWIWSAGNHEIE 55 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~-~~~~~~-~~~P~~~v~GNHD~~ 55 (298)
+.+||+||++||++....... ........+ +++.+. ..+|++.++||||..
T Consensus 37 ~~~vD~VliaGDlfD~~~~~~---~~~~~~~~~~l~~~L~~~gi~v~~I~GNHD~~ 89 (340)
T PHA02546 37 AHGITTWIQLGDTFDVRKAIT---QNTMNFVREKIFDLLKEAGITLHVLVGNHDMY 89 (340)
T ss_pred HcCCCEEEECCcccCCCCCCC---HHHHHHHHHHHHHHHHHCCCeEEEEccCCCcc
Confidence 468999999999995432221 111122222 234443 368999999999974
No 86
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=97.09 E-value=0.0032 Score=54.41 Aligned_cols=62 Identities=16% Similarity=0.197 Sum_probs=39.9
Q ss_pred HHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCCChHHHHHHHHHHHHcCccEEEeccccceeeee
Q 022359 114 EWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSY 181 (298)
Q Consensus 114 ~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~ 181 (298)
+-+++.+++++ ++.+.+||..|-..-... .....++.+...+.+.++|+||.||.|..+-..
T Consensus 162 ~~~~~~i~~lr-~~~D~vIv~~H~G~e~~~-----~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q~~E 223 (239)
T cd07381 162 ERIAADIAEAK-KKADIVIVSLHWGVEYSY-----YPTPEQRELARALIDAGADLVIGHHPHVLQGIE 223 (239)
T ss_pred HHHHHHHHHHh-hcCCEEEEEecCcccCCC-----CCCHHHHHHHHHHHHCCCCEEEcCCCCcCCCeE
Confidence 44556666553 347899999996542211 112234455555556799999999999987654
No 87
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=97.00 E-value=0.0049 Score=53.30 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=38.8
Q ss_pred HHHHHHhhcccCCCCeEEEEeecccccCCCCCCCCChHHHHHHHHHHHHcCccEEEeccccceeeee
Q 022359 115 WLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSY 181 (298)
Q Consensus 115 wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~ 181 (298)
-+++.+++++ ++.+.+||+.|-..-.... ....++.+..-+.+.++|+||.||.|..+...
T Consensus 161 ~i~~~i~~lr-~~~D~vIv~~H~G~e~~~~-----p~~~~~~~A~~l~~~G~DvIiG~H~H~~~~~e 221 (239)
T smart00854 161 KILADIARAR-KKADVVIVSLHWGVEYQYE-----PTDEQRELAHALIDAGADVVIGHHPHVLQPIE 221 (239)
T ss_pred HHHHHHHHHh-ccCCEEEEEecCccccCCC-----CCHHHHHHHHHHHHcCCCEEEcCCCCcCCceE
Confidence 3455555543 3578999999976532211 11223445455555789999999999987654
No 88
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=96.92 E-value=0.012 Score=59.14 Aligned_cols=48 Identities=25% Similarity=0.254 Sum_probs=29.6
Q ss_pred CCCCeEEEEeecccccCCCCCCCCChHHHHHHHHHHHH-cCccEEEeccccceee
Q 022359 126 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAYER 179 (298)
Q Consensus 126 ~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvlsGH~H~y~r 179 (298)
.+.+.||++.|-.+-..... ..... .... +.+ -+||++|+||+|..-.
T Consensus 243 ~GaDvIIaLsH~G~~~d~~~---~~~en--a~~~-l~~v~gID~IlgGHsH~~~~ 291 (780)
T PRK09418 243 EGADVIVALAHSGVDKSGYN---VGMEN--ASYY-LTEVPGVDAVLMGHSHTEVK 291 (780)
T ss_pred cCCCEEEEEeccCccccccc---ccchh--hhHH-HhcCCCCCEEEECCCCCccc
Confidence 46789999999887543211 11110 1111 234 4899999999998653
No 89
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=96.76 E-value=0.011 Score=59.55 Aligned_cols=47 Identities=26% Similarity=0.172 Sum_probs=29.1
Q ss_pred CCCCeEEEEeecccccCCCCCCCCChHHHHHHHHHHHHcCccEEEeccccce
Q 022359 126 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAY 177 (298)
Q Consensus 126 ~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y 177 (298)
.+.+.||++.|-.+.........++ .. ..|.+--+||++|.||+|..
T Consensus 308 ~GaDvIIaLsH~G~~~d~~~~~~En--~~---~~LA~v~GIDaIvgGHsH~~ 354 (814)
T PRK11907 308 AGADIVLVLSHSGIGDDQYEVGEEN--VG---YQIASLSGVDAVVTGHSHAE 354 (814)
T ss_pred cCCCEEEEEeCCCcccccccccccc--hh---hHHhcCCCCCEEEECCCCCc
Confidence 4678999999988754321111111 11 12222358999999999985
No 90
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.65 E-value=0.0027 Score=54.40 Aligned_cols=46 Identities=26% Similarity=0.540 Sum_probs=31.8
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCc
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEI 54 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~ 54 (298)
+.+||.||++||+.+.... ...+..+.+.++.+ ..+++.++||||.
T Consensus 56 ~~~~d~vIi~GDl~h~~~~-----~~~~~~~~~~l~~~--~~~v~~V~GNHD~ 101 (225)
T TIGR00024 56 KYGIEALIINGDLKHEFKK-----GLEWRFIREFIEVT--FRDLILIRGNHDA 101 (225)
T ss_pred hcCCCEEEEcCccccccCC-----hHHHHHHHHHHHhc--CCcEEEECCCCCC
Confidence 3579999999999965432 12344444455443 3599999999996
No 91
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=96.57 E-value=0.011 Score=62.43 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=32.0
Q ss_pred CCCCeEEEEeecccccCCCCCCCCChHHHHHHHHHHHH-cCccEEEeccccceee
Q 022359 126 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAYER 179 (298)
Q Consensus 126 ~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvlsGH~H~y~r 179 (298)
.+.+.+|++.|-..-...... ... .....|.++ -+||++|.||+|....
T Consensus 233 ~gaDvII~l~H~G~~~~~~~~--~~e---n~~~~la~~~~gID~Il~GHsH~~~~ 282 (1163)
T PRK09419 233 GGADVIVALAHSGIESEYQSS--GAE---DSVYDLAEKTKGIDAIVAGHQHGLFP 282 (1163)
T ss_pred cCCCEEEEEeccCcCCCCCCC--Ccc---hHHHHHHHhCCCCcEEEeCCCccccc
Confidence 567899999998875433211 111 122344444 4899999999998743
No 92
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=96.41 E-value=0.02 Score=56.58 Aligned_cols=47 Identities=21% Similarity=0.274 Sum_probs=29.3
Q ss_pred CCCCeEEEEeecccccCCCCCCCCChHHHHHHHHHHHH-cCccEEEecccccee
Q 022359 126 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAYE 178 (298)
Q Consensus 126 ~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvlsGH~H~y~ 178 (298)
.+.+.||++.|-.+....... ..+. ....+.+ -+||++|+||+|..-
T Consensus 194 ~gaDvII~LsH~G~~~d~~~~--~~en----~~~~l~~v~gID~Il~GHsH~~~ 241 (626)
T TIGR01390 194 KGADIIVALAHSGISADPYQP--GAEN----SAYYLTKVPGIDAVLFGHSHAVF 241 (626)
T ss_pred cCCCEEEEEeccCcCCCcccc--ccch----HHHHHhcCCCCCEEEcCCCCccC
Confidence 467899999998875432111 1111 1112334 489999999999853
No 93
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=96.31 E-value=0.0064 Score=49.58 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=27.5
Q ss_pred CCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCcc
Q 022359 4 GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 55 (298)
Q Consensus 4 ~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 55 (298)
++|.|+++||++..... ..+.+.++.+ ..|++.|+||||..
T Consensus 42 ~~d~vi~~GDl~~~~~~---------~~~~~~l~~~--~~~~~~v~GNHD~~ 82 (168)
T cd07390 42 PDDTVYHLGDFSFGGKA---------GTELELLSRL--NGRKHLIKGNHDSS 82 (168)
T ss_pred CCCEEEEeCCCCCCCCh---------HHHHHHHHhC--CCCeEEEeCCCCch
Confidence 58999999999954321 1112333332 36899999999973
No 94
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.1 Score=41.07 Aligned_cols=85 Identities=16% Similarity=0.260 Sum_probs=52.5
Q ss_pred HHHHHHHHcCccEEEeccccceeeeeeecCceeeccCCccccCCCCCCCEEEEeCCCCCCCCCCCCCCCCCCCCcceeeC
Q 022359 156 AFESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREA 235 (298)
Q Consensus 156 ~l~~l~~~~~v~lvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~ 235 (298)
.|.-|-++.+||+.++||+|..+.... +|-.||--|++-+... .. .....
T Consensus 98 sL~~LaRqldvDILl~G~Th~f~Aye~-------------------eg~ffvnPGSaTGAfn----~~-------~t~~~ 147 (183)
T KOG3325|consen 98 SLALLARQLDVDILLTGHTHKFEAYEH-------------------EGKFFVNPGSATGAFN----VS-------DTDII 147 (183)
T ss_pred HHHHHHHhcCCcEEEeCCceeEEEEEe-------------------CCcEEeCCCcccCCCc----cc-------ccCCC
Confidence 455556678999999999999998752 3444555555433211 11 11113
Q ss_pred cccEEEEEEecCceEEEEEEEcCCCceeeeeeEEEEe
Q 022359 236 SYGHSTLEIKNRTHAFYHWNRNDDGKKVATDSFILHN 272 (298)
Q Consensus 236 ~~Gf~~l~v~~~~~l~~~~~~~~dg~~~~~D~f~i~~ 272 (298)
.+.|..+++...+...+-| +--||++ ..|.+...|
T Consensus 148 ~PSFvLmDiqg~~~v~YvY-~lidgeV-kVdki~ykK 182 (183)
T KOG3325|consen 148 VPSFVLMDIQGSTVVTYVY-RLIDGEV-KVDKIEYKK 182 (183)
T ss_pred CCceEEEEecCCEEEEEEe-eeeCCcE-EEEEEEecC
Confidence 5679999997666554443 4456776 357776554
No 95
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=95.98 E-value=0.051 Score=53.90 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=28.4
Q ss_pred CCCCeEEEEeecccccCCCCCCCCChHHHHHHHHHHHH-cCccEEEeccccce
Q 022359 126 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAY 177 (298)
Q Consensus 126 ~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvlsGH~H~y 177 (298)
.+.+.||++.|-.+-...... ..+. .... +.+ -+||++|.||+|..
T Consensus 217 ~gaDvII~LsH~G~~~d~~~~--~aen---~~~~-l~~v~gID~Il~GHsH~~ 263 (649)
T PRK09420 217 KGADIVVAIPHSGISADPYKA--MAEN---SVYY-LSEVPGIDAIMFGHSHAV 263 (649)
T ss_pred cCCCEEEEEecCCcCCCCccc--cccc---hhHH-HhcCCCCCEEEeCCCCcc
Confidence 467899999998874322111 0011 1111 233 48999999999986
No 96
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=95.74 E-value=0.42 Score=41.29 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCccCcCCCCccccccccccccccCcCCCC
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASK 81 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~~ 81 (298)
+.++||||.-|.++-....- ....+.++++ ..+.++ +.|||=|... +. ..+-.-..+.--|.|.+.
T Consensus 25 ~~~~DfVIaNgENaa~G~Gi------t~~~~~~L~~---~GvDvi-T~GNH~wdkk-ei---~~~i~~~~~ilRPaN~p~ 90 (253)
T PF13277_consen 25 EYGIDFVIANGENAAGGFGI------TPKIAEELFK---AGVDVI-TMGNHIWDKK-EI---FDFIDKEPRILRPANYPP 90 (253)
T ss_dssp --G-SEEEEE-TTTTTTSS--------HHHHHHHHH---HT-SEE-E--TTTTSST-TH---HHHHHH-SSEE--TTS-T
T ss_pred hcCCCEEEECCcccCCCCCC------CHHHHHHHHh---cCCCEE-ecCcccccCc-HH---HHHHhcCCCcEECCCCCC
Confidence 45899999999999543221 1122223322 345544 8999999532 11 111110112222444322
Q ss_pred -CCCCceEEEEeCCEEEEEEcCCC--CCCCChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCCChHHHHHHH
Q 022359 82 -SSSPLWYAIRRASAHIIVLSSYS--PFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFE 158 (298)
Q Consensus 82 -~~~~~~ys~~~g~v~fi~ldt~~--~~~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~ 158 (298)
..+..|..++.++.++.++|-.. .......-+..+++.|++. +.+.+.+||=+|-= ....... .
T Consensus 91 ~~pG~G~~i~~~~g~kv~ViNl~Gr~fm~~~~~PF~~~d~~l~~l-~~~~~~iiVDFHAE-----------aTSEK~A-~ 157 (253)
T PF13277_consen 91 GTPGRGYRIFEKNGKKVAVINLMGRVFMPPIDCPFRAADRLLEEL-KEETDIIIVDFHAE-----------ATSEKQA-M 157 (253)
T ss_dssp T-SSBSEEEEEETTEEEEEEEEE--TTS---S-HHHHHHHHHHH------SEEEEEEE-S------------HHHHHH-H
T ss_pred CCCcCcEEEEEECCEEEEEEECcccccCCCCCChHHHHHHHHHhc-cccCCEEEEEeecC-----------cHHHHHH-H
Confidence 33456888899998888887532 1122234455666666664 25677899988841 1112222 2
Q ss_pred HHHHHcCccEEEeccccce
Q 022359 159 SWFVRYKVDVVFAGHVHAY 177 (298)
Q Consensus 159 ~l~~~~~v~lvlsGH~H~y 177 (298)
-.+..-+|.+|+.=|+|.-
T Consensus 158 g~~lDGrvsaV~GTHTHVq 176 (253)
T PF13277_consen 158 GWYLDGRVSAVVGTHTHVQ 176 (253)
T ss_dssp HHHHBTTBSEEEEESSSS-
T ss_pred HHHhCCcEEEEEeCCCCcc
Confidence 3445678999999999985
No 97
>PHA02239 putative protein phosphatase
Probab=95.53 E-value=0.017 Score=49.86 Aligned_cols=44 Identities=23% Similarity=0.287 Sum_probs=27.3
Q ss_pred CcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCcc
Q 022359 5 AQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 55 (298)
Q Consensus 5 pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 55 (298)
.|.++++||++.....+ . +....+++.+....++++++||||..
T Consensus 30 ~d~li~lGD~iDrG~~s----~---~v~~~l~~~~~~~~~~~~l~GNHE~~ 73 (235)
T PHA02239 30 EETIVFLGDYVDRGKRS----K---DVVNYIFDLMSNDDNVVTLLGNHDDE 73 (235)
T ss_pred CCEEEEecCcCCCCCCh----H---HHHHHHHHHhhcCCCeEEEECCcHHH
Confidence 58999999999542211 1 22222223223346899999999974
No 98
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=95.39 E-value=0.089 Score=47.34 Aligned_cols=154 Identities=21% Similarity=0.220 Sum_probs=79.2
Q ss_pred CCCcEEEEcCcccccCCCcc---cccchhHHH---HHHHHH-HhcCCCceEEccCCCCccCcCCCCcccccccccccccc
Q 022359 3 SGAQTVLFLGDLSYADRYQF---IDVGVRWDS---WGRFVE-RSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPT 75 (298)
Q Consensus 3 ~~pd~vl~~GD~~y~~~~~~---~~~~~~~~~---~~~~~~-~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~ 75 (298)
.+.|++|.+||.---.+..+ ......+.. |.+.+. ...+.+|.+++=||||... |.. .+
T Consensus 29 tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIFIGGNHEAsn------------yL~--eL 94 (456)
T KOG2863|consen 29 TKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIFIGGNHEASN------------YLQ--EL 94 (456)
T ss_pred CCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEEecCchHHHH------------HHH--hc
Confidence 47899999999753322211 011222332 333332 2345678899999999741 111 11
Q ss_pred CcCCCCCCCCceE-----EEEeCCEEEEEEcCC---CCCC-------CC-----hHH---HHHHHHHHhhcccCCCCeEE
Q 022359 76 PHLASKSSSPLWY-----AIRRASAHIIVLSSY---SPFV-------KY-----TPQ---WEWLREELKKVDREKTPWLI 132 (298)
Q Consensus 76 p~~~~~~~~~~~y-----s~~~g~v~fi~ldt~---~~~~-------~~-----~~Q---~~wL~~~L~~~~~~~~~~~i 132 (298)
|..+ -...+.|| ...+++||+-+|..- .+|. +. ..- ...=-..|... +.+-=|
T Consensus 95 pyGG-wVApNIyYlG~agVv~~~gvRIggiSGI~k~~dy~kgh~E~ppyn~stiRsiYHvR~~dV~~Lkql---k~piDI 170 (456)
T KOG2863|consen 95 PYGG-WVAPNIYYLGYAGVVNFGGVRIGGISGIYKEHDYRKGHFEWPPYNNSTIRSIYHVRISDVAKLKQL---KHPIDI 170 (456)
T ss_pred ccCc-eeccceEEeeecceEEECCEEEeeccchhhhhhcccCCCCCCCccchhhhhhhhhhhhhhHHHHhh---cCcceE
Confidence 1110 01123344 367799999998862 2221 10 000 01111223332 234558
Q ss_pred EEeecccccCCCCCCCCChH-------H----------HHHHHHHHHHcCccEEEeccccc
Q 022359 133 VLMHVPIYNSNEAHFMEGES-------M----------RAAFESWFVRYKVDVVFAGHVHA 176 (298)
Q Consensus 133 v~~H~P~~~~~~~~~~~~~~-------~----------~~~l~~l~~~~~v~lvlsGH~H~ 176 (298)
+++|.=|-....+ ++... + ...+++|+++-++..+|+.|.|.
T Consensus 171 fLSHDWP~GI~~y--Gd~~~LLr~KPFFrqeie~~~LGSp~~~eLL~~LkP~yWfsAHLH~ 229 (456)
T KOG2863|consen 171 FLSHDWPRGIYYY--GDKKQLLRLKPFFRQEIEEGKLGSPALEELLEDLKPQYWFSAHLHV 229 (456)
T ss_pred EeecCCCcchhhc--CCHHHHHhcCcHHHHHHhcCCcCChHHHHHHHHhCcchhhhhhHhh
Confidence 8888654332221 11100 1 23577888899999999999997
No 99
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=95.06 E-value=0.032 Score=49.30 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=27.7
Q ss_pred CCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCcc
Q 022359 4 GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 55 (298)
Q Consensus 4 ~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 55 (298)
+.|.++++||++.....+ .+..+.+..+ ..++.+|.||||..
T Consensus 28 ~~D~li~lGDlVdrGp~s--------~~vl~~l~~l--~~~~~~VlGNHD~~ 69 (275)
T PRK00166 28 AKDTLWLVGDLVNRGPDS--------LEVLRFVKSL--GDSAVTVLGNHDLH 69 (275)
T ss_pred CCCEEEEeCCccCCCcCH--------HHHHHHHHhc--CCCeEEEecChhHH
Confidence 579999999999543211 2233333333 34688999999984
No 100
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=95.06 E-value=0.035 Score=47.44 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=33.4
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCcc
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 55 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 55 (298)
..+|+-+|++||+-..-+... ..+|+....+++.+... -++.+.||||..
T Consensus 61 ~~~p~~lIilGD~KH~~~~~~---~~e~~~~~~f~~~~~~~-evi~i~GNHD~~ 110 (235)
T COG1407 61 RYGPKRLIILGDLKHEFGKSL---RQEKEEVREFLELLDER-EVIIIRGNHDNG 110 (235)
T ss_pred hcCCCEEEEcCccccccCccc---cccHHHHHHHHHHhccC-cEEEEeccCCCc
Confidence 468999999999987654321 23444444444444333 599999999974
No 101
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=94.99 E-value=0.081 Score=46.01 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCCChHHHHHHHHHHHHcCccEEEeccccceeeee
Q 022359 112 QWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSY 181 (298)
Q Consensus 112 Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~ 181 (298)
+.+.+.+++++++ ++.+.+||+.|--.-... .....++.+...+-+.++|+|+.+|.|..|-..
T Consensus 169 ~~~~i~~~i~~~r-~~~D~vIv~~HwG~e~~~-----~p~~~q~~~a~~lidaGaDiIiG~HpHv~q~~E 232 (250)
T PF09587_consen 169 GIERIKEDIREAR-KKADVVIVSLHWGIEYEN-----YPTPEQRELARALIDAGADIIIGHHPHVIQPVE 232 (250)
T ss_pred hHHHHHHHHHHHh-cCCCEEEEEeccCCCCCC-----CCCHHHHHHHHHHHHcCCCEEEeCCCCcccceE
Confidence 3477888888874 668899999997432111 112344556666666899999999999998875
No 102
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=94.97 E-value=0.14 Score=49.05 Aligned_cols=56 Identities=21% Similarity=0.352 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCCChHHHHHHHHHHHHc-CccE-EEeccccce
Q 022359 111 PQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRY-KVDV-VFAGHVHAY 177 (298)
Q Consensus 111 ~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~v~l-vlsGH~H~y 177 (298)
.|.+|-.+.++. .+.+.+|+.+|.|.-....+ .-.+..+...+ ++++ ||-||.|..
T Consensus 212 ~~~~~~~~m~~~---~~idlii~lgH~~~~~~~e~--------~~~~~~ir~~~p~t~IqviGGHshir 269 (602)
T KOG4419|consen 212 TQSEWEQDMVNT---TDIDLIIALGHSPVRDDDEW--------KSLHAEIRKVHPNTPIQVIGGHSHIR 269 (602)
T ss_pred hccchHHHHhhc---cCccEEEEecccccccchhh--------hhHHHHHhhhCCCCceEEECchhhhh
Confidence 467787777776 67788999999986543221 11333344343 6778 999999984
No 103
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=94.95 E-value=0.043 Score=46.92 Aligned_cols=44 Identities=25% Similarity=0.239 Sum_probs=28.2
Q ss_pred CCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCcc
Q 022359 4 GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 55 (298)
Q Consensus 4 ~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 55 (298)
..|.++++||++.....+ .+..+.+..+.....++++.||||..
T Consensus 33 ~~d~lvflGD~IDRGp~S--------~~vl~~l~~l~~~~~~~~l~GNHE~~ 76 (222)
T cd07413 33 PERQVVFLGDLIDRGPEI--------RELLEIVKSMVDAGHALAVMGNHEFN 76 (222)
T ss_pred CCCEEEEeCcccCCCCCH--------HHHHHHHHHhhcCCCEEEEEccCcHH
Confidence 357999999999543211 22334444343334788999999974
No 104
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=94.80 E-value=0.039 Score=47.50 Aligned_cols=43 Identities=23% Similarity=0.262 Sum_probs=27.8
Q ss_pred CcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCcc
Q 022359 5 AQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 55 (298)
Q Consensus 5 pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 55 (298)
.|.++++||++.....+ .+-.+++..+.....++++.||||..
T Consensus 38 ~d~lv~lGDlIDrG~~s--------~evl~~l~~l~~~~~~~~v~GNHE~~ 80 (234)
T cd07423 38 GRRAVFVGDLVDRGPDS--------PEVLRLVMSMVAAGAALCVPGNHDNK 80 (234)
T ss_pred CCEEEEECCccCCCCCH--------HHHHHHHHHHhhCCcEEEEECCcHHH
Confidence 68999999999542211 23334444443334688999999974
No 105
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=94.73 E-value=0.042 Score=46.35 Aligned_cols=40 Identities=20% Similarity=0.107 Sum_probs=26.4
Q ss_pred CCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCcc
Q 022359 4 GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 55 (298)
Q Consensus 4 ~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 55 (298)
++|.++++||++.....+ . +.++.+.. .+++++.||||..
T Consensus 28 ~~d~~~~~GD~v~~g~~~--------~---~~~~~l~~-~~~~~v~GNhe~~ 67 (207)
T cd07424 28 ARDRLISVGDLIDRGPES--------L---ACLELLLE-PWFHAVRGNHEQM 67 (207)
T ss_pred CCCEEEEeCCcccCCCCH--------H---HHHHHHhc-CCEEEeECCChHH
Confidence 589999999999543211 1 22332222 4689999999974
No 106
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=94.28 E-value=0.064 Score=46.76 Aligned_cols=172 Identities=15% Similarity=0.146 Sum_probs=92.9
Q ss_pred EEEEcCcccccCCCcccc--cchhHHHHHHHHHH----hcCCCceEEccCCCCccCcCC---C----Ccccccc-cc--c
Q 022359 7 TVLFLGDLSYADRYQFID--VGVRWDSWGRFVER----SAAYQPWIWSAGNHEIEYMTY---M----GEVVPFK-SY--L 70 (298)
Q Consensus 7 ~vl~~GD~~y~~~~~~~~--~~~~~~~~~~~~~~----~~~~~P~~~v~GNHD~~~~~~---~----~~~~~~~-~~--~ 70 (298)
-++..||++.+.+....+ ...+...|...++. ..-++|+|.-.||||..-... . .+...|. .| .
T Consensus 129 GlV~ggDitddgggq~~qprEg~ql~qf~~RYsq~vG~~h~H~PvYvGlgnhdldq~gpph~~DWyRrElrdyve~~Hr~ 208 (392)
T COG5555 129 GLVEGGDITDDGGGQSFQPREGNQLKQFELRYSQDVGNIHMHYPVYVGLGNHDLDQKGPPHSLDWYRRELRDYVENYHRS 208 (392)
T ss_pred eEEeecceeccCCCcccCccccchhhchHhhhccCCCCceeeeeeEeccCchhhcccCCCCchhHHHHHHHHHHHhhcCc
Confidence 367778999776654322 01222223222321 223579999999999852210 0 0000110 01 0
Q ss_pred ccccc-CcC-CCCCCCCceEEEEeCCEEEEEEcCCCCC-CC-ChHHHHHHHHHHhhcccCCCCeEEEEeecccccCC--C
Q 022359 71 HRYPT-PHL-ASKSSSPLWYAIRRASAHIIVLSSYSPF-VK-YTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSN--E 144 (298)
Q Consensus 71 ~~f~~-p~~-~~~~~~~~~ys~~~g~v~fi~ldt~~~~-~~-~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~--~ 144 (298)
..|.- |.. ........-||++.|+++.+-+-+...- .. ...-+-||+.+|...... .+-++++.|...-+.. .
T Consensus 209 ~vf~Kppvp~atYd~l~d~ySwdwgglhlvh~hrf~Gd~~~ga~sslpwlk~dl~~~aad-grpv~LfqhyGwdtfstea 287 (392)
T COG5555 209 DVFWKPPVPPATYDQLKDRYSWDWGGLHLVHYHRFIGDAEPGANSSLPWLKVDLIYSAAD-GRPVYLFQHYGWDTFSTEA 287 (392)
T ss_pred CcccCCCCCcccccccchheeccccceeEEEEeeeccccCCCccccCcceeccceeeccC-CCceeehhhhCccceeccc
Confidence 11111 111 1112233458999999988887664321 01 123467999999975433 3457888887542211 1
Q ss_pred CC--------CC------CChHHHHHHHHHHHHcCccEEEeccccceee
Q 022359 145 AH--------FM------EGESMRAAFESWFVRYKVDVVFAGHVHAYER 179 (298)
Q Consensus 145 ~~--------~~------~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r 179 (298)
+. .. .....+..+...++-|+|.-.+.||.|...-
T Consensus 288 wdpAsrT~Dd~Gsgaphww~a~er~all~~lqGYNvvg~fhGhkhd~~m 336 (392)
T COG5555 288 WDPASRTLDDTGSGAPHWWPAPERGALLFFLQGYNVVGTFHGHKHDFNM 336 (392)
T ss_pred cCchhcccccCCCCCCCCCCCCCcchHHHhhcCceeEEeccccccccce
Confidence 11 00 1123467788888889999999999998733
No 107
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=94.20 E-value=0.058 Score=46.82 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=27.0
Q ss_pred CcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCcc
Q 022359 5 AQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 55 (298)
Q Consensus 5 pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 55 (298)
-|.++++||++.....+ .+-.+.+..+....+++++.||||..
T Consensus 37 ~d~li~lGDliDRGp~S--------~~vl~~~~~~~~~~~~~~l~GNHE~~ 79 (245)
T PRK13625 37 QRKLAFVGDLTDRGPHS--------LRMIEIVWELVEKKAAYYVPGNHCNK 79 (245)
T ss_pred CCEEEEECcccCCCcCh--------HHHHHHHHHHhhCCCEEEEeCccHHH
Confidence 47899999999542211 22233333333345799999999963
No 108
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=93.95 E-value=0.075 Score=46.47 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=27.5
Q ss_pred CCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCcc
Q 022359 4 GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 55 (298)
Q Consensus 4 ~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 55 (298)
+.|.++++||++.....+ .+..+++..+. ..+..++||||..
T Consensus 26 ~~D~Li~lGDlVdRGp~s--------~evl~~l~~l~--~~v~~VlGNHD~~ 67 (257)
T cd07422 26 AKDRLWLVGDLVNRGPDS--------LETLRFVKSLG--DSAKTVLGNHDLH 67 (257)
T ss_pred CCCEEEEecCcCCCCcCH--------HHHHHHHHhcC--CCeEEEcCCchHH
Confidence 468999999999542211 22334443332 4688999999984
No 109
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=93.72 E-value=0.11 Score=44.16 Aligned_cols=44 Identities=20% Similarity=0.111 Sum_probs=28.0
Q ss_pred CCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcC-CCceEEccCCCCcc
Q 022359 4 GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-YQPWIWSAGNHEIE 55 (298)
Q Consensus 4 ~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~~v~GNHD~~ 55 (298)
.+|.+|++||++.....+ .+..+.+..+.. ..+++.+.||||..
T Consensus 24 ~~d~li~lGD~vdrg~~~--------~~~l~~l~~~~~~~~~~~~l~GNHe~~ 68 (225)
T cd00144 24 PNDKLIFLGDYVDRGPDS--------VEVIDLLLALKILPDNVILLRGNHEDM 68 (225)
T ss_pred CCCEEEEECCEeCCCCCc--------HHHHHHHHHhcCCCCcEEEEccCchhh
Confidence 578999999999542211 222233333222 45799999999984
No 110
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=92.63 E-value=0.15 Score=43.51 Aligned_cols=41 Identities=20% Similarity=0.142 Sum_probs=25.9
Q ss_pred CCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCcc
Q 022359 3 SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 55 (298)
Q Consensus 3 ~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 55 (298)
.+.|.++++||++.....+ .+..+.+. . ..++++.||||..
T Consensus 41 ~~~d~l~~lGD~vdrG~~~--------~~~l~~l~---~-~~~~~v~GNHE~~ 81 (218)
T PRK09968 41 PETDLLISVGDNIDRGPES--------LNVLRLLN---Q-PWFISVKGNHEAM 81 (218)
T ss_pred CCCCEEEECCCCcCCCcCH--------HHHHHHHh---h-CCcEEEECchHHH
Confidence 3579999999999543221 12222222 2 2478999999974
No 111
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=92.60 E-value=0.17 Score=44.98 Aligned_cols=43 Identities=23% Similarity=0.314 Sum_probs=25.7
Q ss_pred CcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCC---CceEEccCCCCcc
Q 022359 5 AQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAY---QPWIWSAGNHEIE 55 (298)
Q Consensus 5 pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~---~P~~~v~GNHD~~ 55 (298)
.+.+|++||++... +. . ....+++..+... ..++++.||||..
T Consensus 35 ~~~iVfLGDyVDRG--Pd---S---~eVld~L~~l~~~~~~~~vv~LrGNHE~~ 80 (304)
T cd07421 35 SALVIFLGDYCDRG--PE---T---RKVIDFLISLPEKHPKQRHVFLCGNHDFA 80 (304)
T ss_pred CcEEEEeCCcCCCC--CC---H---HHHHHHHHHhhhcccccceEEEecCChHH
Confidence 46899999999542 21 1 2223333333222 2578999999964
No 112
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=91.57 E-value=0.19 Score=42.78 Aligned_cols=40 Identities=20% Similarity=0.067 Sum_probs=25.0
Q ss_pred CCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCcc
Q 022359 4 GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 55 (298)
Q Consensus 4 ~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 55 (298)
+.|-++++||++.....+ .+-.+.+. . ..+.++.||||..
T Consensus 44 ~~D~li~lGDlvDrGp~s--------~~vl~~l~---~-~~~~~v~GNHE~~ 83 (218)
T PRK11439 44 WRDLLISVGDLIDRGPQS--------LRCLQLLE---E-HWVRAVRGNHEQM 83 (218)
T ss_pred ccCEEEEcCcccCCCcCH--------HHHHHHHH---c-CCceEeeCchHHH
Confidence 468899999999543221 12222222 2 2467899999974
No 113
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=91.46 E-value=0.24 Score=39.49 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=27.0
Q ss_pred eEEEEeecccccCCCCCCCCChHHHHHHHHHHHHcCccEEEeccccceeee
Q 022359 130 WLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERS 180 (298)
Q Consensus 130 ~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~ 180 (298)
-.|++.|.|-.+... .+ ........+.++++.|.||.|. ++.
T Consensus 109 ~~~~LsHyP~~~~~~----~~----~~~r~~y~~~~~~llIHGH~H~-~~~ 150 (186)
T COG4186 109 EDVYLSHYPRPGQDH----PG----MESRFDYLRLRVPLLIHGHLHS-QFP 150 (186)
T ss_pred eEEEEEeCCCCCCCC----cc----hhhhHHHHhccCCeEEeccccc-ccc
Confidence 368999998655332 11 1222334566899999999998 443
No 114
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=91.33 E-value=0.33 Score=45.58 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=36.9
Q ss_pred CCCcEEEEcCcccccCCCccc--------ccchhHHHHHHHHHHhcCCCceEEccCCCCcc
Q 022359 3 SGAQTVLFLGDLSYADRYQFI--------DVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 55 (298)
Q Consensus 3 ~~pd~vl~~GD~~y~~~~~~~--------~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 55 (298)
.+...++++||.+.+-+.... +...+++++.+++..+...+-++..|||||..
T Consensus 261 ~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~vp~~I~v~i~PGnhDa~ 321 (481)
T COG1311 261 SRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQVPEHIKVFIMPGNHDAV 321 (481)
T ss_pred cceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhhCCCCceEEEecCCCCcc
Confidence 456789999999975443211 12335566666666666788899999999984
No 115
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=91.09 E-value=9.4 Score=32.95 Aligned_cols=151 Identities=15% Similarity=0.194 Sum_probs=80.1
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCccCcCCCCccccccccccccccCcCCCC
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASK 81 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~~~~ 81 (298)
+.++||||.-|-++-..-. -.|+-+.++++ ..+. ..+.|||=|.. ++. ..+..-..++--|.+-+.
T Consensus 28 kyk~dfvI~N~ENaa~G~G------it~k~y~~l~~---~G~d-viT~GNH~wd~-~ei---~~~i~~~~~ilRP~N~p~ 93 (266)
T COG1692 28 KYKIDFVIVNGENAAGGFG------ITEKIYKELLE---AGAD-VITLGNHTWDQ-KEI---LDFIDNADRILRPANYPD 93 (266)
T ss_pred hhcCcEEEEcCccccCCcC------CCHHHHHHHHH---hCCC-EEecccccccc-hHH---HHHhhcccceeccCCCCC
Confidence 3467888888888744321 22344444433 2444 34899999852 111 111111112222433221
Q ss_pred -CCCCceEEEEeCCEEEEEEcCCC--CCC-CChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCCChHHHHHH
Q 022359 82 -SSSPLWYAIRRASAHIIVLSSYS--PFV-KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAF 157 (298)
Q Consensus 82 -~~~~~~ys~~~g~v~fi~ldt~~--~~~-~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l 157 (298)
..+..|.-|...+.++.++|-.. ... ....-+.-+++.|.+.+ .+++.+||-+|.---+. ...+
T Consensus 94 ~~~G~G~~~f~~ng~ki~V~Nl~Grv~m~~~~d~PF~~~d~l~~~~~-~~~~~iiVDFHAEtTSE-----------K~a~ 161 (266)
T COG1692 94 GTPGKGSRIFKINGKKLAVINLMGRVFMPPALDNPFKAADKLLDEIK-LGTDLIIVDFHAETTSE-----------KNAF 161 (266)
T ss_pred CCCcceEEEEEeCCcEEEEEEeeccccCccccCCHHHHHHHHHHhCc-cCCceEEEEccccchhh-----------hhhh
Confidence 23345677778777777766432 111 12334555677777643 44578999888532111 1111
Q ss_pred HHHHHHcCccEEEeccccceee
Q 022359 158 ESWFVRYKVDVVFAGHVHAYER 179 (298)
Q Consensus 158 ~~l~~~~~v~lvlsGH~H~y~r 179 (298)
-++.+-.|.+|+.=|+|....
T Consensus 162 -g~yldGrvsavvGTHTHV~Ta 182 (266)
T COG1692 162 -GWYLDGRVSAVVGTHTHVPTA 182 (266)
T ss_pred -heEEcCeEEEEEeccCccccc
Confidence 123455799999999998533
No 116
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=90.78 E-value=5.8 Score=34.78 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=27.3
Q ss_pred EEEEeecccccCCCCCC-CCCh--HHHHHHHHHHHHcCccEEEeccccce
Q 022359 131 LIVLMHVPIYNSNEAHF-MEGE--SMRAAFESWFVRYKVDVVFAGHVHAY 177 (298)
Q Consensus 131 ~iv~~H~P~~~~~~~~~-~~~~--~~~~~l~~l~~~~~v~lvlsGH~H~y 177 (298)
=+++.|-|+...+..-. ..+. ...+.+..+..+-+..+.+.||.|.-
T Consensus 215 DvL~tHtPPlG~gd~~~~~~gqr~GC~ell~tVe~rvqpk~hVfGhvhe~ 264 (305)
T KOG3947|consen 215 DVLITHTPPLGHGDLVPVFSGQRNGCVELLNTVERRVQPKYHVFGHVHEG 264 (305)
T ss_pred ceeccCCCCCCcchhcccccCcccCHHHHHHhHhhccccceEEeeeeecC
Confidence 36788998865332210 0111 12334444444467889999999976
No 117
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=89.22 E-value=0.49 Score=41.77 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=26.0
Q ss_pred CCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCcc
Q 022359 4 GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 55 (298)
Q Consensus 4 ~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 55 (298)
..|-++++||++.....+ .+-.+++..+. ..+..|.||||..
T Consensus 28 ~~D~l~~lGDlVdRGP~s--------levL~~l~~l~--~~~~~VlGNHD~~ 69 (279)
T TIGR00668 28 GQDTLWLTGDLVARGPGS--------LEVLRYVKSLG--DAVRLVLGNHDLH 69 (279)
T ss_pred CCCEEEEeCCccCCCCCH--------HHHHHHHHhcC--CCeEEEEChhHHH
Confidence 458899999999543221 22233333332 2356899999973
No 118
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=84.39 E-value=1.3 Score=42.15 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=16.6
Q ss_pred CCCCcEEEEcCcccccCCCc
Q 022359 2 ESGAQTVLFLGDLSYADRYQ 21 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~ 21 (298)
+.+.||||..||++..+..+
T Consensus 50 e~~VDmiLlGGDLFHeNkPS 69 (646)
T KOG2310|consen 50 ENDVDMILLGGDLFHENKPS 69 (646)
T ss_pred hcCCcEEEecCcccccCCcc
Confidence 56899999999999886543
No 119
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=82.80 E-value=1.7 Score=39.28 Aligned_cols=23 Identities=4% Similarity=0.052 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCccEEEeccccc
Q 022359 154 RAAFESWFVRYKVDVVFAGHVHA 176 (298)
Q Consensus 154 ~~~l~~l~~~~~v~lvlsGH~H~ 176 (298)
.+.+...+++.+.++++=||.=.
T Consensus 253 ~~~~~~Fl~~n~l~~IIR~He~v 275 (321)
T cd07420 253 PDVTSKVLQKHGLSLLIRSHECK 275 (321)
T ss_pred HHHHHHHHHHCCCcEEEEcChhh
Confidence 46777889999999999999854
No 120
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=80.31 E-value=2.5 Score=38.00 Aligned_cols=23 Identities=9% Similarity=0.109 Sum_probs=19.3
Q ss_pred HHHHHHHHHHcCccEEEeccccc
Q 022359 154 RAAFESWFVRYKVDVVFAGHVHA 176 (298)
Q Consensus 154 ~~~l~~l~~~~~v~lvlsGH~H~ 176 (298)
.+.+.+.+++.+.++++=||.=.
T Consensus 222 ~~~~~~Fl~~n~l~~iiR~He~~ 244 (305)
T cd07416 222 YRAVCEFLQKNNLLSIIRAHEAQ 244 (305)
T ss_pred HHHHHHHHHHcCCeEEEEecccc
Confidence 45778889999999999999854
No 121
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=79.72 E-value=2.2 Score=37.90 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCccEEEeccccc
Q 022359 154 RAAFESWFVRYKVDVVFAGHVHA 176 (298)
Q Consensus 154 ~~~l~~l~~~~~v~lvlsGH~H~ 176 (298)
.+.+.+.+++.+.++++=||.=.
T Consensus 214 ~~~~~~Fl~~n~l~~iiR~He~~ 236 (285)
T cd07415 214 QDVVEEFNHNNGLTLICRAHQLV 236 (285)
T ss_pred HHHHHHHHHHCCCeEEEEcCccc
Confidence 46778889999999999999854
No 122
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=78.98 E-value=3.2 Score=36.56 Aligned_cols=21 Identities=10% Similarity=0.363 Sum_probs=18.6
Q ss_pred HHHHHHHHHHcCccEEEeccc
Q 022359 154 RAAFESWFVRYKVDVVFAGHV 174 (298)
Q Consensus 154 ~~~l~~l~~~~~v~lvlsGH~ 174 (298)
.+.+.+.+++.+.++++-||.
T Consensus 200 ~~~~~~Fl~~n~l~~iiR~He 220 (271)
T smart00156 200 PDAVDEFLKKNNLKLIIRAHQ 220 (271)
T ss_pred HHHHHHHHHHCCCeEEEecCc
Confidence 467788899999999999996
No 123
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=78.72 E-value=1.2 Score=37.28 Aligned_cols=55 Identities=9% Similarity=0.070 Sum_probs=29.2
Q ss_pred CCCCcEEEEcCcccccCCCcccc-----cchhHHHHH----HHHHHhcCCCceEEccCCCCccC
Q 022359 2 ESGAQTVLFLGDLSYADRYQFID-----VGVRWDSWG----RFVERSAAYQPWIWSAGNHEIEY 56 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~-----~~~~~~~~~----~~~~~~~~~~P~~~v~GNHD~~~ 56 (298)
+.+|+.+|++|+.+......... ....-..+. +.++.+...++++.+||+||...
T Consensus 29 ~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vvlvPg~~D~~~ 92 (209)
T PF04042_consen 29 ASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPSTQVVLVPGPNDPTS 92 (209)
T ss_dssp CTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCSEEEEE--TTCTT-
T ss_pred cCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccccEEEEeCCCccccc
Confidence 56899999999999653321100 001111122 22333445789999999999853
No 124
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=78.13 E-value=3 Score=38.51 Aligned_cols=21 Identities=10% Similarity=0.300 Sum_probs=18.8
Q ss_pred HHHHHHHHHHcCccEEEeccc
Q 022359 154 RAAFESWFVRYKVDVVFAGHV 174 (298)
Q Consensus 154 ~~~l~~l~~~~~v~lvlsGH~ 174 (298)
.+.+...+++.+.++++=||.
T Consensus 273 ~~~~~~FL~~n~l~~IIRsHe 293 (377)
T cd07418 273 PDCTEEFLEKNNLKLIIRSHE 293 (377)
T ss_pred HHHHHHHHHHcCCcEEEECCC
Confidence 467788899999999999998
No 125
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=77.17 E-value=3.2 Score=37.35 Aligned_cols=21 Identities=5% Similarity=0.226 Sum_probs=18.4
Q ss_pred HHHHHHHHHHcCccEEEeccc
Q 022359 154 RAAFESWFVRYKVDVVFAGHV 174 (298)
Q Consensus 154 ~~~l~~l~~~~~v~lvlsGH~ 174 (298)
.+.+.+.+++.+.++++=||.
T Consensus 242 ~~~~~~Fl~~n~l~~iiRgHe 262 (311)
T cd07419 242 PDRVHRFLEENDLQMIIRAHE 262 (311)
T ss_pred HHHHHHHHHHCCCeEEEEech
Confidence 467788899999999999997
No 126
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=76.37 E-value=3.6 Score=36.72 Aligned_cols=23 Identities=9% Similarity=0.294 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCccEEEeccccc
Q 022359 154 RAAFESWFVRYKVDVVFAGHVHA 176 (298)
Q Consensus 154 ~~~l~~l~~~~~v~lvlsGH~H~ 176 (298)
.+.+.+.+++.+.++++=||.=.
T Consensus 222 ~~~~~~Fl~~n~l~~iiR~He~~ 244 (293)
T cd07414 222 KDVVAKFLNKHDLDLICRAHQVV 244 (293)
T ss_pred HHHHHHHHHHcCCeEEEECCccc
Confidence 46778889999999999999854
No 127
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=75.04 E-value=3.8 Score=36.77 Aligned_cols=23 Identities=4% Similarity=0.068 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCccEEEeccccc
Q 022359 154 RAAFESWFVRYKVDVVFAGHVHA 176 (298)
Q Consensus 154 ~~~l~~l~~~~~v~lvlsGH~H~ 176 (298)
.+.+.+.+++.+.++++=||.=.
T Consensus 215 ~~~~~~Fl~~n~l~~iiR~He~~ 237 (303)
T PTZ00239 215 AKVTKEFCRLNDLTLICRAHQLV 237 (303)
T ss_pred HHHHHHHHHHCCCcEEEEcChhh
Confidence 46778889999999999999854
No 128
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=74.28 E-value=3.7 Score=37.07 Aligned_cols=23 Identities=4% Similarity=0.150 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCccEEEeccccc
Q 022359 154 RAAFESWFVRYKVDVVFAGHVHA 176 (298)
Q Consensus 154 ~~~l~~l~~~~~v~lvlsGH~H~ 176 (298)
.+.+.+.+++.+.++++-||.=.
T Consensus 233 ~~~~~~Fl~~n~l~~iiR~He~~ 255 (316)
T cd07417 233 PDVTKRFLEENNLEYIIRSHEVK 255 (316)
T ss_pred HHHHHHHHHHcCCcEEEECCccc
Confidence 45777889999999999999854
No 129
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=71.64 E-value=3.9 Score=33.07 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=23.5
Q ss_pred eEEEEeecccccCCCCCCCCChHHHHHHHHHHHHcCccEEEeccccceeeee
Q 022359 130 WLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSY 181 (298)
Q Consensus 130 ~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~ 181 (298)
..|++.|.|..... . +.+.+++|+||+|......
T Consensus 108 ~~i~l~H~~~~~~~------~------------~~~~d~vi~GHtH~~~~~~ 141 (168)
T cd07390 108 RRVYLSHYPILEWN------G------------LDRGSWNLHGHIHSNSPDI 141 (168)
T ss_pred EEEEEEeCCcccCC------C------------CCCCeEEEEeeeCCCCCCC
Confidence 57888996643211 0 3467899999999877654
No 130
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=71.46 E-value=5.9 Score=35.83 Aligned_cols=23 Identities=9% Similarity=0.294 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcCccEEEeccccc
Q 022359 154 RAAFESWFVRYKVDVVFAGHVHA 176 (298)
Q Consensus 154 ~~~l~~l~~~~~v~lvlsGH~H~ 176 (298)
.+.+.+.+++.+.++++=||.-.
T Consensus 231 ~~~~~~Fl~~n~l~~IiR~Hq~v 253 (320)
T PTZ00480 231 QEIVQVFLKKHELDLICRAHQVV 253 (320)
T ss_pred HHHHHHHHHhCCCcEEEEcCccc
Confidence 46778889999999999999865
No 131
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=67.70 E-value=7.1 Score=34.85 Aligned_cols=23 Identities=9% Similarity=0.208 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCccEEEeccccc
Q 022359 154 RAAFESWFVRYKVDVVFAGHVHA 176 (298)
Q Consensus 154 ~~~l~~l~~~~~v~lvlsGH~H~ 176 (298)
.+.+...+++.+.++++=||.=.
T Consensus 224 ~~~~~~Fl~~n~l~~iiR~Hq~~ 246 (294)
T PTZ00244 224 EDIVNDFLDMVDMDLIVRAHQVM 246 (294)
T ss_pred HHHHHHHHHHcCCcEEEEcCccc
Confidence 45778889999999999999854
No 132
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=63.34 E-value=13 Score=29.90 Aligned_cols=39 Identities=28% Similarity=0.294 Sum_probs=25.8
Q ss_pred cEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCc
Q 022359 6 QTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEI 54 (298)
Q Consensus 6 d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~ 54 (298)
|.+.++||++..-.. -......++.+. .-...|+||||-
T Consensus 47 D~lwhLGDl~~~~n~--------~~~a~~IlerLn--Grkhlv~GNhDk 85 (186)
T COG4186 47 DVLWHLGDLSSGANR--------ERAAGLILERLN--GRKHLVPGNHDK 85 (186)
T ss_pred ceEEEecccccccch--------hhHHHHHHHHcC--CcEEEeeCCCCC
Confidence 789999999954321 133445555543 334889999997
No 133
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=56.35 E-value=9.3 Score=33.46 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCcc-EEEeccccce
Q 022359 153 MRAAFESWFVRYKVD-VVFAGHVHAY 177 (298)
Q Consensus 153 ~~~~l~~l~~~~~v~-lvlsGH~H~y 177 (298)
+-+.+.+|++++++| |||+||+-..
T Consensus 141 qp~~i~~Ll~~~~PDIlViTGHD~~~ 166 (283)
T TIGR02855 141 MPEKVLDLIEEVRPDILVITGHDAYS 166 (283)
T ss_pred chHHHHHHHHHhCCCEEEEeCchhhh
Confidence 456889999999999 6799999654
No 134
>COG2843 PgsA Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]
Probab=56.07 E-value=40 Score=31.13 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=40.0
Q ss_pred HHHHHHHhhcccCCCCeEEEEeecc-cccCCCCCCCCChHHHHHHHHHHHHcCccEEEeccccceeeee
Q 022359 114 EWLREELKKVDREKTPWLIVLMHVP-IYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSY 181 (298)
Q Consensus 114 ~wL~~~L~~~~~~~~~~~iv~~H~P-~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~ 181 (298)
.=+..+++.++ ++.+-+|++.|+- -|.... ...++.+..-+...++++++.+|-|..|-..
T Consensus 211 ~~~~~~v~~a~-k~adlviv~~HwG~ey~~~p------~~~q~~~a~~lidAGa~iIvGhhpHvlqpiE 272 (372)
T COG2843 211 ERVLAAVLAAK-KGADLVIVQPHWGVEYAYEP------AAGQRALARRLIDAGADIIVGHHPHVLQPIE 272 (372)
T ss_pred hhhHHHHHhhh-ccCCEEEEeccccccccCCC------cHHHHHHHHHHHhcCcCeEecCCCCcCcceE
Confidence 33444444443 4567899999983 233221 2234556555666899999999999998876
No 135
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=55.09 E-value=12 Score=32.90 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCcc-EEEeccccce
Q 022359 152 SMRAAFESWFVRYKVD-VVFAGHVHAY 177 (298)
Q Consensus 152 ~~~~~l~~l~~~~~v~-lvlsGH~H~y 177 (298)
.+-+.+.+|+.++++| +||+||+=..
T Consensus 141 eqp~~i~~Ll~~~~PDIlViTGHD~~~ 167 (287)
T PF05582_consen 141 EQPEKIYRLLEEYRPDILVITGHDGYL 167 (287)
T ss_pred HhhHHHHHHHHHcCCCEEEEeCchhhh
Confidence 4557889999999999 6799999754
No 136
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=51.21 E-value=20 Score=30.87 Aligned_cols=43 Identities=12% Similarity=0.413 Sum_probs=21.0
Q ss_pred EEEeecccccCCCCCCCCChHHHHHHHHHHHHcCccEEEeccccc
Q 022359 132 IVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHA 176 (298)
Q Consensus 132 iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~ 176 (298)
+++.|||++-...... ............+.++++ .+++-|+..
T Consensus 56 lIItHHP~~f~~~~~~-~~~~~~~~~~~~li~~~I-~vy~~Ht~l 98 (241)
T PF01784_consen 56 LIITHHPLFFKPLKSL-TGDDYKGKIIEKLIKNGI-SVYSAHTNL 98 (241)
T ss_dssp EEEESS-SSSSTSSHC-HCHSHHHHHHHHHHHTT--EEEEESHHH
T ss_pred EEEEcCchhhcCCccc-cccchhhHHHHHHHHCCC-EEEEecccc
Confidence 6777999866443221 122223333333444677 556777764
No 137
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=49.19 E-value=20 Score=31.06 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=22.8
Q ss_pred EEEcCcccccCCCcccccchhHHHHHHHHHHhcCC--CceEEccCCCCcc
Q 022359 8 VLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAY--QPWIWSAGNHEIE 55 (298)
Q Consensus 8 vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~--~P~~~v~GNHD~~ 55 (298)
-|++||++...-++ -+.|.=++ -++.. -.+..+.||||..
T Consensus 73 YLFLGDyVDRG~~S-------vEt~lLLl-~lK~rYP~ritLiRGNHEsR 114 (303)
T KOG0372|consen 73 YLFLGDYVDRGYYS-------VETFLLLL-ALKVRYPDRITLIRGNHESR 114 (303)
T ss_pred eEeecchhccccch-------HHHHHHHH-HHhhcCcceeEEeeccchhh
Confidence 47889999543221 13333222 22222 3478899999975
No 138
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=45.15 E-value=29 Score=29.56 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=23.7
Q ss_pred EEEcCcccccCCCcccccchhHHHHHHHHHHhcCCC--ceEEccCCCCcc
Q 022359 8 VLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQ--PWIWSAGNHEIE 55 (298)
Q Consensus 8 vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~--P~~~v~GNHD~~ 55 (298)
-|+.||.+...-++ .+.|.-++ -+.... .+-.+.||||..
T Consensus 76 YiFmGDfVDRGyyS-------LEtfT~l~-~LkaryP~~ITLlRGNHEsR 117 (306)
T KOG0373|consen 76 YIFMGDFVDRGYYS-------LETFTLLL-LLKARYPAKITLLRGNHESR 117 (306)
T ss_pred eEEecccccccccc-------HHHHHHHH-HHhhcCCceeEEeeccchhh
Confidence 47789999653321 23443333 233343 477899999974
No 139
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=42.89 E-value=25 Score=29.36 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=12.1
Q ss_pred CccEEEeccccceee
Q 022359 165 KVDVVFAGHVHAYER 179 (298)
Q Consensus 165 ~v~lvlsGH~H~y~r 179 (298)
+.+++++||+|....
T Consensus 168 ~~~~iV~GHTh~~~~ 182 (207)
T cd07424 168 GVDAVVHGHTPVKRP 182 (207)
T ss_pred CCCEEEECCCCCCcc
Confidence 468999999998643
No 140
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=42.65 E-value=1.1e+02 Score=24.64 Aligned_cols=60 Identities=22% Similarity=0.221 Sum_probs=35.9
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCCChHHHHHHHHHHHHcCccEEEec
Q 022359 95 AHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAG 172 (298)
Q Consensus 95 v~fi~ldt~~~~~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsG 172 (298)
.++.+|-+ .++..+-+.+.|++. --...|+..|+|++. ....+.+.+.+.+.++|+++.|
T Consensus 49 ~~ifllG~------~~~~~~~~~~~l~~~---yP~l~ivg~~~g~f~---------~~~~~~i~~~I~~~~pdiv~vg 108 (172)
T PF03808_consen 49 KRIFLLGG------SEEVLEKAAANLRRR---YPGLRIVGYHHGYFD---------EEEEEAIINRINASGPDIVFVG 108 (172)
T ss_pred CeEEEEeC------CHHHHHHHHHHHHHH---CCCeEEEEecCCCCC---------hhhHHHHHHHHHHcCCCEEEEE
Confidence 45555533 234555566666652 112455656666561 1234577788889999999876
No 141
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=39.14 E-value=31 Score=30.58 Aligned_cols=42 Identities=19% Similarity=0.409 Sum_probs=31.3
Q ss_pred CCCCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcC-CCceEEccCCCCcc
Q 022359 2 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-YQPWIWSAGNHEIE 55 (298)
Q Consensus 2 ~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~~v~GNHD~~ 55 (298)
.-+||+|+++|-++|. +.|.+.++.... -.|+++.||--|..
T Consensus 294 ~G~vDaIvLTGGiA~~------------~~f~~~I~~~v~~iapv~v~PGE~Ele 336 (358)
T COG3426 294 KGKVDAIVLTGGIAYE------------KLFVDAIEDRVSWIAPVIVYPGEDELE 336 (358)
T ss_pred CCCCCEEEEecchhhH------------HHHHHHHHHHHhhhcceEecCCchHHH
Confidence 4589999999999854 556666554433 35999999998874
No 142
>PRK10799 metal-binding protein; Provisional
Probab=38.49 E-value=66 Score=27.80 Aligned_cols=45 Identities=11% Similarity=0.182 Sum_probs=24.1
Q ss_pred EEEeecccccCCCCCCCCChHHHHHHHHHHHHcCccEEEeccccceee
Q 022359 132 IVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYER 179 (298)
Q Consensus 132 iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r 179 (298)
+++.|||++-....... ..+.......+.+.++ .+++-|++.-..
T Consensus 59 lIitHHP~~~~~~~~~~--~~~~~~~~~~li~~~i-~vy~~Htn~D~~ 103 (247)
T PRK10799 59 AVIVHHGYFWKGESPVI--RGMKRNRLKTLLANDI-NLYGWHLPLDAH 103 (247)
T ss_pred EEEECCchhccCCCccc--cchHHHHHHHHHHCCC-eEEEEecchhhC
Confidence 55579998654332211 1123334444556666 556788876543
No 143
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=38.34 E-value=1.8e+02 Score=22.35 Aligned_cols=58 Identities=12% Similarity=0.060 Sum_probs=36.6
Q ss_pred HHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCC--ChHHHHHHHHHHHHcCccEEEecc
Q 022359 113 WEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFME--GESMRAAFESWFVRYKVDVVFAGH 173 (298)
Q Consensus 113 ~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~--~~~~~~~l~~l~~~~~v~lvlsGH 173 (298)
+++-+..|++ ......|+++-...+.......+. ...+.++|..++.+++|.+.+|+=
T Consensus 21 ~~fA~all~~---gh~~v~iFly~DgV~~~~~~~~Pa~dEf~l~~~~~~l~~~~gv~v~~C~~ 80 (126)
T COG1553 21 LRFAEALLEQ---GHELVRLFLYQDGVHNGNKGQKPASDEFNLIQAWLELLTEQGVPVKLCVA 80 (126)
T ss_pred HHHHHHHHHc---CCeEEEEEEeeccccccccCCCCcccccchHHHHHHHHHHcCCcEeeeHH
Confidence 4555555554 234455666666655544333222 234678999999999999998863
No 144
>PHA03008 hypothetical protein; Provisional
Probab=36.83 E-value=72 Score=26.64 Aligned_cols=43 Identities=7% Similarity=0.159 Sum_probs=28.0
Q ss_pred EEEEeecccccCCCCCCCCChHHHHHHHHHHHHcCccEEEecccccee
Q 022359 131 LIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYE 178 (298)
Q Consensus 131 ~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~ 178 (298)
=|++.|-||+.-...+ -+...+.+++ .+-++.+.+.||.-.|.
T Consensus 163 DILITHgPP~GhLD~~-vGC~~Ll~~I----~rVKPKyHVFGh~~~~~ 205 (234)
T PHA03008 163 DILITASPPFAILDDD-LACGDLFSKV----IKIKPKFHIFNGLTQFS 205 (234)
T ss_pred CEEEeCCCCccccccc-cCcHHHHHHH----HHhCCcEEEeCCccccC
Confidence 3899999998755432 1333344443 35588999999965553
No 145
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=36.25 E-value=83 Score=27.25 Aligned_cols=42 Identities=7% Similarity=0.197 Sum_probs=22.3
Q ss_pred EEEeecccccCCCCCCCCChHHHHHHHHHHHHcCccEEEeccccc
Q 022359 132 IVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHA 176 (298)
Q Consensus 132 iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~ 176 (298)
+++.|||++-...... ......++ ...+.++++ .+++-|+..
T Consensus 60 lIitHHP~~f~~~~~~-~~~~~~~~-~~~li~~~I-~vy~~Ht~l 101 (249)
T TIGR00486 60 LIITHHPLIWKPLKRL-IRGIKPGR-LKILLQNDI-SLYSAHTNL 101 (249)
T ss_pred EEEEcCccccCCcccc-cCCCHHHH-HHHHHHCCC-eEEEeecch
Confidence 6667888865432111 11123334 444666777 556777654
No 146
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=33.82 E-value=79 Score=27.25 Aligned_cols=46 Identities=20% Similarity=0.128 Sum_probs=24.9
Q ss_pred EEEEcCcccccCCCcccccchhHHHHHHHHHHhcCC-CceEEccCCCCc
Q 022359 7 TVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAY-QPWIWSAGNHEI 54 (298)
Q Consensus 7 ~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~P~~~v~GNHD~ 54 (298)
-++++||.....+..... .....++.+.++.+..- .-.+++|| |++
T Consensus 120 ~~lftGDtl~~~g~g~~~-~~~~~~~~~Sl~~l~~l~~~~~i~pG-H~~ 166 (248)
T TIGR03413 120 PALFCGDTLFSAGCGRLF-EGTPEQMYDSLQRLAALPDDTLVYCA-HEY 166 (248)
T ss_pred CEEEEcCccccCCcCCCC-CCCHHHHHHHHHHHHcCCCCeEEECC-CCc
Confidence 379999988765432110 12224455555554332 22456788 986
No 147
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=33.70 E-value=42 Score=29.32 Aligned_cols=40 Identities=23% Similarity=0.204 Sum_probs=21.8
Q ss_pred EEEcCcccccCCCcccccchhHHHHHHHHHHhcCC--CceEEccCCCCcc
Q 022359 8 VLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAY--QPWIWSAGNHEIE 55 (298)
Q Consensus 8 vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~--~P~~~v~GNHD~~ 55 (298)
.|+.||.+...-.+ ++-...+-.+.-. -.+-.++||||..
T Consensus 90 ylfmGDyvdrGy~S--------vetVS~lva~Kvry~~rvtilrGNHEsr 131 (319)
T KOG0371|consen 90 YLFMGDYVDRGYYS--------VETVSLLVALKVRYPDRVTILRGNHESR 131 (319)
T ss_pred eeeeeeecccccch--------HHHHHHHHHhhccccceeEEecCchHHH
Confidence 57789998543221 2222222122212 3477899999984
No 148
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=29.72 E-value=62 Score=24.57 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHcC-ccEEEeccc
Q 022359 152 SMRAAFESWFVRYK-VDVVFAGHV 174 (298)
Q Consensus 152 ~~~~~l~~l~~~~~-v~lvlsGH~ 174 (298)
.+.+.+.++.++++ ..++++||.
T Consensus 49 ~~~~~l~~~~~~~~~~~i~itGHS 72 (140)
T PF01764_consen 49 QILDALKELVEKYPDYSIVITGHS 72 (140)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEEET
T ss_pred HHHHHHHHHHhcccCccchhhccc
Confidence 44567777777775 789999996
No 149
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=27.88 E-value=1.6e+02 Score=23.77 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=36.1
Q ss_pred CEEEEEEcCCCCCCCChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCCChHHHHHHHHHHHHcCccEEEec
Q 022359 94 SAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAG 172 (298)
Q Consensus 94 ~v~fi~ldt~~~~~~~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsG 172 (298)
+.++.+|-+ .++..+-+.+.|++. --...|+..|+|++.... ...+...+.+.++|+++.|
T Consensus 46 ~~~v~llG~------~~~~~~~~~~~l~~~---yp~l~i~g~~~g~~~~~~---------~~~i~~~I~~~~pdiv~vg 106 (171)
T cd06533 46 GLRVFLLGA------KPEVLEKAAERLRAR---YPGLKIVGYHHGYFGPEE---------EEEIIERINASGADILFVG 106 (171)
T ss_pred CCeEEEECC------CHHHHHHHHHHHHHH---CCCcEEEEecCCCCChhh---------HHHHHHHHHHcCCCEEEEE
Confidence 345666633 334555555666652 112456666888765321 2237777888999999876
No 150
>COG1490 Dtd D-Tyr-tRNAtyr deacylase [Translation, ribosomal structure and biogenesis]
Probab=26.46 E-value=62 Score=25.32 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=25.6
Q ss_pred EcCCCceeeeeeEEEEecccCCchhhccch
Q 022359 256 RNDDGKKVATDSFILHNQYWASNRRRRKLN 285 (298)
Q Consensus 256 ~~~dg~~~~~D~f~i~~~~~~~~~~~~~~~ 285 (298)
.+-.|++++.-+||+..+..+=.+|||+--
T Consensus 67 ~di~G~iL~VSQFTL~adt~kG~RPsFs~a 96 (145)
T COG1490 67 QDVGGEILVVSQFTLYADTKKGRRPSFSKA 96 (145)
T ss_pred HHcCCcEEEEEEEEEeecccCCCCCCcccc
Confidence 456799999999999999999999998743
No 151
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=26.33 E-value=2.7e+02 Score=21.34 Aligned_cols=75 Identities=7% Similarity=0.061 Sum_probs=41.6
Q ss_pred EEEEcCCCCCCC--ChHHHHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCC--CChHHHHHHHHHHHHcCccEEEec
Q 022359 97 IIVLSSYSPFVK--YTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFM--EGESMRAAFESWFVRYKVDVVFAG 172 (298)
Q Consensus 97 fi~ldt~~~~~~--~~~Q~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~--~~~~~~~~l~~l~~~~~v~lvlsG 172 (298)
+.++-+..+++. ..+-+++.+..++. ......|+++--..+........ ....+.+.|..+...|++++++|+
T Consensus 3 ~~iv~~~~Py~~~~~~~al~~A~aa~~~---gh~v~~vFf~~DgV~~a~~~q~p~~~~~n~~~~~~~L~~~~~v~l~vC~ 79 (128)
T PRK00207 3 YAIAVTGPAYGTQQASSAYQFAQALLAE---GHELVSVFFYQDGVLNANALTVPASDEFDLVRAWQQLAAEHGVALNVCV 79 (128)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHHhC---CCCeeEEEEehHHHHHHhcCCCCchhhhhHHHHHHHHHHhcCCEEEEeH
Confidence 334444444432 23345555555553 22213567766666553322222 223467788888899999999998
Q ss_pred cc
Q 022359 173 HV 174 (298)
Q Consensus 173 H~ 174 (298)
+.
T Consensus 80 ~~ 81 (128)
T PRK00207 80 AA 81 (128)
T ss_pred HH
Confidence 75
No 152
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=25.18 E-value=1.3e+02 Score=26.07 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=24.5
Q ss_pred EEEcCcccccCCCcccccchhHHHHHHHHHHhcC-CCceEEccCCCCcc
Q 022359 8 VLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-YQPWIWSAGNHEIE 55 (298)
Q Consensus 8 vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~~v~GNHD~~ 55 (298)
++++||.....+....- .....++.+.++.+.. ....+++|| ||+.
T Consensus 122 ~lFtGDtlf~~g~gr~f-~g~~~~~~~Sl~kl~~l~~~t~i~pg-H~y~ 168 (251)
T PRK10241 122 YLFCGDTLFSGGCGRLF-EGTASQMYQSLKKINALPDDTLICCA-HEYT 168 (251)
T ss_pred cEEEcCeeccCCcCCCC-CCCHHHHHHHHHHHHcCCCCEEEECC-CCCh
Confidence 58999977664432111 1223445555555433 223556677 9973
No 153
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=24.98 E-value=3.2e+02 Score=20.88 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhcccCCCC-eEEEEeecccccCCCCCCC--CChHHHHHHHHHHHHcCccEEEecc
Q 022359 111 PQWEWLREELKKVDREKTP-WLIVLMHVPIYNSNEAHFM--EGESMRAAFESWFVRYKVDVVFAGH 173 (298)
Q Consensus 111 ~Q~~wL~~~L~~~~~~~~~-~~iv~~H~P~~~~~~~~~~--~~~~~~~~l~~l~~~~~v~lvlsGH 173 (298)
+-+++.+..++. ..+ ..|+++.-..+.......+ ....+.+.|..+...|++++++|.-
T Consensus 18 ~al~~A~aa~~~----gh~v~~vFf~~DgV~~a~~~q~p~~~~~n~~~~~~~L~~~~~i~l~vC~~ 79 (127)
T TIGR03012 18 SAYQFAQALLAK----GHEIVRVFFYQDGVLNANNLVSPASDEFDLVAAWQQLAQEHQVDLVVCVA 79 (127)
T ss_pred HHHHHHHHHHHC----CCcEEEEEEehHHHHhhccCCCCccccccHHHHHHHHHHhcCCEEEeeHH
Confidence 345555555543 233 4577777766654332211 2335677888888899999999853
No 154
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=22.51 E-value=40 Score=30.68 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCccEEEeccccceeee
Q 022359 154 RAAFESWFVRYKVDVVFAGHVHAYERS 180 (298)
Q Consensus 154 ~~~l~~l~~~~~v~lvlsGH~H~y~r~ 180 (298)
...+.+++.+.+.++++-||.=.-+..
T Consensus 233 ~~~v~~f~~~~~ldlivRaHqvv~dGy 259 (331)
T KOG0374|consen 233 PAVVEDFCKKLDLDLIVRAHQVVEDGY 259 (331)
T ss_pred HHHHHHHHHHhCcceEEEcCccccccc
Confidence 457778899999999999996544333
No 155
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=22.39 E-value=2.2e+02 Score=18.73 Aligned_cols=42 Identities=19% Similarity=0.109 Sum_probs=23.7
Q ss_pred CCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEcc
Q 022359 4 GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSA 49 (298)
Q Consensus 4 ~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~ 49 (298)
=++.|++.=|.+...|++- ..++. .++.++++..+.||+.|.
T Consensus 13 L~~~ilfi~D~Se~CGysi---e~Q~~-L~~~ik~~F~~~P~i~V~ 54 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSI---EEQLS-LFKEIKPLFPNKPVIVVL 54 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-H---HHHHH-HHHHHHHHTTTS-EEEEE
T ss_pred hcceEEEEEcCCCCCCCCH---HHHHH-HHHHHHHHcCCCCEEEEE
Confidence 3577888889987777642 22333 344556666788998775
No 156
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=21.74 E-value=58 Score=32.14 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=24.9
Q ss_pred CCcEEEEcCcccccCCCcccccchhHHHHHHHHHHhcCCCceEEccCCCCcc
Q 022359 4 GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 55 (298)
Q Consensus 4 ~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 55 (298)
..|-+=++||+...+..+ +.- ++.+...--+=..+||||..
T Consensus 184 ~VDhLHIvGDIyDRGp~p--------d~I---mD~Lm~~hsvDIQWGNHDIl 224 (640)
T PF06874_consen 184 AVDHLHIVGDIYDRGPRP--------DKI---MDRLMNYHSVDIQWGNHDIL 224 (640)
T ss_pred hhhheeecccccCCCCCh--------hHH---HHHHhcCCCccccccchHHH
Confidence 457778899999543322 333 33333333455679999984
No 157
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=21.50 E-value=2.3e+02 Score=22.30 Aligned_cols=59 Identities=19% Similarity=0.118 Sum_probs=35.5
Q ss_pred HHHHHHHHhhcccCCCCeEEEEeecccccCCCCCCCCChHHHHHHHHHHHHcCccEEEeccccceeee
Q 022359 113 WEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERS 180 (298)
Q Consensus 113 ~~wL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~ 180 (298)
.+.|++.|+. .+.+-++.+-| |.+... ....+.+.+..++++.++++||.||+-.-...
T Consensus 47 ~~~l~~~l~~---~G~d~v~~~~~-~~~~~~-----~~~~~a~~l~~~~~~~~~~lVl~~~t~~g~~l 105 (164)
T PF01012_consen 47 AEALRKALAK---YGADKVYHIDD-PALAEY-----DPEAYADALAELIKEEGPDLVLFGSTSFGRDL 105 (164)
T ss_dssp HHHHHHHHHS---TTESEEEEEE--GGGTTC------HHHHHHHHHHHHHHHT-SEEEEESSHHHHHH
T ss_pred HHHHhhhhhh---cCCcEEEEecC-cccccc-----CHHHHHHHHHHHHHhcCCCEEEEcCcCCCCcH
Confidence 3446666774 23334444444 332211 22356788999999999999999998876543
Done!