BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022360
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NUQ|A Chain A, Structure Of A Putative Nucleotide Phosphatase From
Saccharomyces Cerevisiae
Length = 282
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 96/239 (40%), Gaps = 58/239 (24%)
Query: 17 LLFDLDDTLYPYSSGIAAACGQNIKDYMVEKLGIERSKIEDLGNLLYKNYGTTMAGLRAI 76
FD+D+ LY S+ I Q+I + L + L N YK YG + GL +
Sbjct: 60 FFFDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAIRGL-VM 118
Query: 77 GYDFDYDDYHSFVHGRLPYEN-LKPD-PVXXXXXXXXXXXKI----IFTNADKVHAVKVL 130
+ + +Y+ V LP ++ LKPD P+ KI +FTNA K HA++ L
Sbjct: 119 FHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCL 178
Query: 131 SRLGLEDCFEGIICFETLNPTHKNTVSDDEDDIAFVESAASTTTSANGPQIFDIIGHFAQ 190
LG+ D F+G + + + + + T
Sbjct: 179 RLLGIADLFDG---------------------LTYCDYSRTDT----------------- 200
Query: 191 PNPSLVALPKTPIACKPSELAIEKALKIASI-NPQRTLFFEDSVRNIQAGKRVGLDTVL 248
+ CKP A EKA+K + + + F +DS +NI+ G ++G+ T +
Sbjct: 201 ------------LVCKPHVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKTCI 247
>pdb|3ONN|A Chain A, Crystal Structure Of 5'-Nucleotidase Sdt1 From
Saccharomyces Cerevisiae
Length = 263
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 96/239 (40%), Gaps = 58/239 (24%)
Query: 17 LLFDLDDTLYPYSSGIAAACGQNIKDYMVEKLGIERSKIEDLGNLLYKNYGTTMAGLRAI 76
FD+D+ LY S+ I Q+I + L + L N YK YG + GL +
Sbjct: 33 FFFDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAIRGL-VM 91
Query: 77 GYDFDYDDYHSFVHGRLPYEN-LKPD-PVXXXXXXXXXXXKI----IFTNADKVHAVKVL 130
+ + +Y+ V LP ++ LKPD P+ KI +FTNA K HA++ L
Sbjct: 92 FHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCL 151
Query: 131 SRLGLEDCFEGIICFETLNPTHKNTVSDDEDDIAFVESAASTTTSANGPQIFDIIGHFAQ 190
LG+ D F+G + + + + + T
Sbjct: 152 RLLGIADLFDG---------------------LTYCDYSRTDT----------------- 173
Query: 191 PNPSLVALPKTPIACKPSELAIEKALKIASI-NPQRTLFFEDSVRNIQAGKRVGLDTVL 248
+ CKP A EKA+K + + + F +DS +NI+ G ++G+ T +
Sbjct: 174 ------------LVCKPHVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKTCI 220
>pdb|3OPX|A Chain A, Crystal Structure Of Pyrimidine 5 -Nucleotidase Sdt1 From
Saccharomyces Cerevisiae Complexed With Uridine
5'-Monophosphate
Length = 263
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 95/239 (39%), Gaps = 58/239 (24%)
Query: 17 LLFDLDDTLYPYSSGIAAACGQNIKDYMVEKLGIERSKIEDLGNLLYKNYGTTMAGLRAI 76
F +D+ LY S+ I Q+I + L + L N YK YG + GL +
Sbjct: 33 FFFAIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAIRGL-VM 91
Query: 77 GYDFDYDDYHSFVHGRLPYEN-LKPD-PVXXXXXXXXXXXKI----IFTNADKVHAVKVL 130
+ + +Y+ V LP ++ LKPD P+ KI +FTNA K HA++ L
Sbjct: 92 FHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCL 151
Query: 131 SRLGLEDCFEGIICFETLNPTHKNTVSDDEDDIAFVESAASTTTSANGPQIFDIIGHFAQ 190
LG+ D F+G + + + + + T
Sbjct: 152 RLLGIADLFDG---------------------LTYCDYSRTDT----------------- 173
Query: 191 PNPSLVALPKTPIACKPSELAIEKALKIASI-NPQRTLFFEDSVRNIQAGKRVGLDTVL 248
+ CKP A EKA+K + + + F +DS +NI+ G ++G+ T +
Sbjct: 174 ------------LVCKPHVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKTCI 220
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 206 KPSELAIEKALKIASINPQRTLFFEDSVRNIQAGKRVGLDTVL 248
KPS + K L+I P++ L D+ +I+AGKR G T L
Sbjct: 139 KPSPTPVLKTLEILGEEPEKALIVGDTDADIEAGKRAGTKTAL 181
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 206 KPSELAIEKALKIASINPQRTLFFEDSVRNIQAGKRVGLDTVL 248
KPS + K L+I P++ L D+ +I+AGKR G T L
Sbjct: 137 KPSPTPVLKTLEILGEEPEKALIVGDTDADIEAGKRAGTKTAL 179
>pdb|2B0C|A Chain A, The Crystal Structure Of The Putative Phosphatase From
Escherichia Coli
Length = 206
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 206 KPSELAIEKALKIASINPQRTLFFEDSVRNIQAGKRVGLDTVLI 249
KP + L+ +P T+FF+D+ NI+ ++G+ ++L+
Sbjct: 148 KPEARIYQHVLQAEGFSPSDTVFFDDNADNIEGANQLGITSILV 191
>pdb|2HOQ|A Chain A, Crystal Structure Of The Probable Haloacid Dehalogenase
(Ph1655) From Pyrococcus Horikoshii Ot3
Length = 241
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 206 KPSELAIEKALKIASINPQRTLFFEDSV-RNIQAGKRVGLDTVLI--GK-SQR----VKG 257
KP +KALK ++ P+ L D + +I KRVG+ TV GK S+R K
Sbjct: 150 KPHPKIFKKALKAFNVKPEEALMVGDRLYSDIYGAKRVGMKTVWFRYGKHSERELEYRKY 209
Query: 258 ADYAFESIHNIKEAIPELWESDMKSEVGYPGQ 289
ADY +++ ++ E + ES +V P Q
Sbjct: 210 ADYEIDNLESLLEVLAR--ESSSNKKVHPPRQ 239
>pdb|2O2X|A Chain A, Crystal Structure Of A Putative Had-Like Phosphatase
(Mll2559) From Mesorhizobium Loti At 1.50 A Resolution
Length = 218
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 196 VALPKTPIACKPSELAIEKALKIASINPQRTLFFEDSVRNIQAGKRVGL 244
+A+P P KP+ + +A K +++ QR+L D + + QAGKR GL
Sbjct: 128 LAIPDHP-XRKPNPGXLVEAGKRLALDLQRSLIVGDKLADXQAGKRAGL 175
>pdb|1JDN|A Chain A, Crystal Structure Of Hormone Receptor
pdb|1JDP|A Chain A, Crystal Structure Of Hormone/receptor Complex
pdb|1JDP|B Chain B, Crystal Structure Of Hormone/receptor Complex
Length = 441
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 218 IASINPQRTLFFEDSVRNIQAGKRVGL-----DTV----LIGKSQRVKGADYAFESI 265
I S + + L ED VRNIQA +RV + DT+ L+ + DYAF +I
Sbjct: 190 IYSFDETKDLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNI 246
>pdb|3EPS|A Chain A, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE From E. Coli
pdb|3EPS|B Chain B, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE From E. Coli
Length = 578
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 12/79 (15%)
Query: 21 LDDTLYPYSSGIAAACGQNIKDYMVEKLGIERSKIEDL-------GNLLYKNYGTTMAGL 73
++ + P + + GQ ++D +E+ G + I L G++L+KN+G T G
Sbjct: 415 IERRMVPLNIWLEQVEGQQLRD-AIEEYG---NAIRQLAAANIFPGDMLFKNFGVTRHG- 469
Query: 74 RAIGYDFDYDDYHSFVHGR 92
R + YD+D Y + V+ R
Sbjct: 470 RVVFYDYDEICYMTEVNFR 488
>pdb|3LC6|A Chain A, The Alternative Conformation Structure Of Isocitrate
Dehydrogenase Kinase/phosphatase From E. Coli
pdb|3LC6|B Chain B, The Alternative Conformation Structure Of Isocitrate
Dehydrogenase Kinase/phosphatase From E. Coli
pdb|3LCB|A Chain A, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|B Chain B, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli
Length = 578
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 12/79 (15%)
Query: 21 LDDTLYPYSSGIAAACGQNIKDYMVEKLGIERSKIEDL-------GNLLYKNYGTTMAGL 73
++ + P + + GQ ++D +E+ G + I L G++L+KN+G T G
Sbjct: 415 IERRMVPLNIWLEQVEGQQLRD-AIEEYG---NAIRQLAAANIFPGDMLFKNFGVTRHG- 469
Query: 74 RAIGYDFDYDDYHSFVHGR 92
R + YD+D Y + V+ R
Sbjct: 470 RVVFYDYDEICYMTEVNFR 488
>pdb|1YK1|A Chain A, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
pdb|1YK1|B Chain B, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
Length = 479
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 218 IASINPQRTLFFEDSVRNIQAGKRVGL-----DTV----LIGKSQRVKGADYAFESI 265
I S + + L ED VRNIQA +RV + DT+ L+ + DYAF +I
Sbjct: 232 IYSFDETKDLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNI 288
>pdb|1YK0|A Chain A, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
pdb|1YK0|B Chain B, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
Length = 480
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 218 IASINPQRTLFFEDSVRNIQAGKRVGL-----DTV----LIGKSQRVKGADYAFESI 265
I S + + L ED VRNIQA +RV + DT+ L+ + DYAF +I
Sbjct: 233 IYSFDETKDLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNI 289
>pdb|3QQR|A Chain A, Crystal Structure Of Parasponia Hemoglobin; Differential
Heme Coordination Is Linked To Quaternary Structure
pdb|3QQR|B Chain B, Crystal Structure Of Parasponia Hemoglobin; Differential
Heme Coordination Is Linked To Quaternary Structure
Length = 162
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 262 FESIHNIKEAIPELWESDMKSEVG 285
F + IKEA+PE+W +MK+ G
Sbjct: 120 FALLETIKEAVPEMWSPEMKNAWG 143
>pdb|2XQV|A Chain A, The X-Ray Structure Of The Zn(Ii) Bound Znua From
Salmonella Enterica
pdb|2XY4|A Chain A, X-Ray Structure Of Znua-Wt From Salmonella Enterica
Length = 288
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 204 ACKPSELA-IEKALKIASINPQRTLFFEDSVRNIQAGKRVGLDTVLIGKSQRVKGAD 259
+ +PS++ ++ A + + P+ F E SVRNI K+V + + K +KGAD
Sbjct: 37 SLRPSDVKRLQGADLVVWVGPEMEAFMEKSVRNIPDNKQVTIAQLADVKPLLMKGAD 93
>pdb|3QQQ|A Chain A, Crystal Structure Of Non-Symbiotic Plant Hemoglobin From
Trema Tomentosa
pdb|3QQQ|B Chain B, Crystal Structure Of Non-Symbiotic Plant Hemoglobin From
Trema Tomentosa
Length = 168
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 262 FESIHNIKEAIPELWESDMKSEVG 285
F + IKEA+PE+W +MK+ G
Sbjct: 126 FALLETIKEAVPEMWSPEMKNAWG 149
>pdb|3FM9|A Chain A, Analysis Of The Structural Determinants Underlying
Discrimination Between Substrate And Solvent In Beta-
Phosphoglucomutase Catalysis
Length = 221
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 24/160 (15%)
Query: 127 VKVLSRLGLEDCFEGIICFETLNPTHKNTVSDDEDDIAFVESAASTTTSANGPQIFD--- 183
VK++ + D + GI+ + L N + A + S NGP + +
Sbjct: 81 VKMIQDVSPADVYPGIL--QLLKDLRSNKIK-----------IALASASKNGPFLLERMN 127
Query: 184 IIGHFAQPNPSLVALPKTPIACKPSELAIEKALKIASINPQRTLFFEDSVRNIQAGKRVG 243
+ G+F +A P A KP+ A + P ++ EDS IQA K G
Sbjct: 128 LTGYF-----DAIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSG 182
Query: 244 LDTVLIGKSQRVKGADYAF--ESIHNIKEAIPELWESDMK 281
+ +G+ + + G D ++ H E + E+W K
Sbjct: 183 ALPIGVGRPEDL-GDDIVIVPDTSHYTLEFLKEVWLQKQK 221
>pdb|1O03|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 6-Phosphate
pdb|1O08|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 1-Phosphate
pdb|1Z4N|A Chain A, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4N|B Chain B, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4O|A Chain A, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1Z4O|B Chain B, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1ZOL|A Chain A, Native Beta-Pgm
pdb|2WF5|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Trifluoromagnesate
pdb|2WHE|A Chain A, Structure Of Native Beta-Phosphoglucomutase In An Open
Conformation Without Bound Ligands.
pdb|2WF7|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphonate And Aluminium Tetrafluoride
pdb|2WF6|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Aluminium Tetrafluoride
pdb|2WF8|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, Glucose-1-Phosphate And Beryllium
Trifluoride
pdb|2WF9|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, And Beryllium Trifluoride, Crystal
Form 2
pdb|2WFA|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Beryllium Trifluoride, In An Open Conformation
Length = 221
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 24/155 (15%)
Query: 127 VKVLSRLGLEDCFEGIICFETLNPTHKNTVSDDEDDIAFVESAASTTTSANGPQIFD--- 183
VK++ + D + GI+ + L N + A + S NGP + +
Sbjct: 81 VKMIQDVSPADVYPGIL--QLLKDLRSNKIK-----------IALASASKNGPFLLERMN 127
Query: 184 IIGHFAQPNPSLVALPKTPIACKPSELAIEKALKIASINPQRTLFFEDSVRNIQAGKRVG 243
+ G+F +A P A KP+ A + P ++ EDS IQA K G
Sbjct: 128 LTGYF-----DAIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSG 182
Query: 244 LDTVLIGKSQRVKGADYAF--ESIHNIKEAIPELW 276
+ +G+ + + G D ++ H E + E+W
Sbjct: 183 ALPIGVGRPEDL-GDDIVIVPDTSHYTLEFLKEVW 216
>pdb|1LVH|A Chain A, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
pdb|1LVH|B Chain B, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
Length = 221
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 24/160 (15%)
Query: 127 VKVLSRLGLEDCFEGIICFETLNPTHKNTVSDDEDDIAFVESAASTTTSANGPQIFD--- 183
VK++ + D + GI+ + L N + A + S NGP + +
Sbjct: 81 VKMIQDVSPADVYPGIL--QLLKDLRSNKIK-----------IALASASKNGPFLLERMN 127
Query: 184 IIGHFAQPNPSLVALPKTPIACKPSELAIEKALKIASINPQRTLFFEDSVRNIQAGKRVG 243
+ G+F +A P A KP+ A + P ++ EDS IQA K G
Sbjct: 128 LTGYF-----DAIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSG 182
Query: 244 LDTVLIGKSQRVKGADYAF--ESIHNIKEAIPELWESDMK 281
+ +G+ + + G D ++ H E + E+W K
Sbjct: 183 ALPIGVGRPEDL-GDDIVIVPDTSHYTLEFLKEVWLQKQK 221
>pdb|3QGM|A Chain A, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|B Chain B, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|C Chain C, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|D Chain D, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
Length = 268
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 203 IACKPSELAIEKALKIASINPQRTLFFEDSVR-NIQAGKRVGLDTVLI--GKSQRVK--- 256
+ KPSE+ +AL I ++ + D + ++ AGK +G +TVL+ G + R
Sbjct: 184 VVGKPSEVIXREALDILGLDAKDVAVVGDQIDVDVAAGKAIGAETVLVLTGVTTRENLDQ 243
Query: 257 -------GADYAFESIHNIKEAI 272
DY F S+ + EA+
Sbjct: 244 XIERHGLKPDYVFNSLKDXVEAL 266
>pdb|3CNH|A Chain A, Crystal Structure Of Predicted Hydrolase Of Haloacid
Dehalogenase-Like Superfamily (Np_295428.1) From
Deinococcus Radiodurans At 1.66 A Resolution
pdb|3CNH|B Chain B, Crystal Structure Of Predicted Hydrolase Of Haloacid
Dehalogenase-Like Superfamily (Np_295428.1) From
Deinococcus Radiodurans At 1.66 A Resolution
Length = 200
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 206 KPSELAIEKALKIASINPQRTLFFEDSVRNIQAGKRVGLDTV 247
KP+ L +A + P+ + +D ++N+QA + VG V
Sbjct: 141 KPNPAXYRLGLTLAQVRPEEAVXVDDRLQNVQAARAVGXHAV 182
>pdb|2HDO|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Np_784602.1) From Lactobacillus Plantarum At 1.50 A
Resolution
Length = 209
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 206 KPSELAIEKALKIASINPQRTLFFEDSVRNIQAGKRVGLD 245
KP L + AL+ ++ PQ LF DSV + Q + +D
Sbjct: 138 KPDPLPLLTALEKVNVAPQNALFIGDSVSDEQTAQAANVD 177
>pdb|2V62|A Chain A, Structure Of Vaccinia-Related Kinase 2
pdb|2V62|B Chain B, Structure Of Vaccinia-Related Kinase 2
Length = 345
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 4 EGRYRMAAAKYDCL-----LFDLDDTLYP--YSSGIAAACGQNIKDYMVEKLGIERSKIE 56
E ++ AK DC+ LD P Y SG+ G++ + ++E+LGI+ KI
Sbjct: 83 ELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLTEFKGRSYRFMVMERLGIDLQKIS 142
Query: 57 DLGNLLYKNYGTTMAGLRAIGYDFDYDDYHSFVHGRLPYENL 98
N +K G+R + +Y + +VHG + NL
Sbjct: 143 G-QNGTFKKSTVLQLGIRMLDV-LEYIHENEYVHGDIKAANL 182
>pdb|3OOQ|A Chain A, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|B Chain B, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|C Chain C, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|D Chain D, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|E Chain E, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|F Chain F, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|G Chain G, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|H Chain H, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|I Chain I, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|J Chain J, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
Length = 396
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 213 EKALKIASINPQRTLFFEDSVRNIQAGK 240
E LKI ++NP + L ED + +I+ GK
Sbjct: 330 EDLLKILTVNPAKILGLEDRIGSIEPGK 357
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,822,976
Number of Sequences: 62578
Number of extensions: 346869
Number of successful extensions: 884
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 856
Number of HSP's gapped (non-prelim): 36
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)