BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022361
         (298 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A7RR04|EFGM_NEMVE Elongation factor G, mitochondrial OS=Nematostella vectensis
           GN=v1g236547 PE=3 SV=1
          Length = 735

 Score = 33.5 bits (75), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 8/79 (10%)

Query: 54  AGTNFPANKLEPIQLNDESDFYQITSPDGFIS---ISGFGSLLSENSARSTFPNLINFRV 110
            G N P N +  I    E  FY+     GFI+   ++G   +L + +A +   + + FR+
Sbjct: 564 VGMNIPKNFIPAI----EKGFYE-ACERGFITGHKVAGVRFVLEDGAAHAVDSSEMAFRM 618

Query: 111 AKLRGFRRVFAHVAPIFFE 129
           A +  FR  F   AP+  E
Sbjct: 619 ATIGAFREAFNKAAPMILE 637


>sp|Q0AEC9|GLPK_NITEC Glycerol kinase OS=Nitrosomonas eutropha (strain C91) GN=glpK PE=3
           SV=1
          Length = 499

 Score = 33.1 bits (74), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 9/90 (10%)

Query: 185 LDGKPFTNRAVLCARSSDEEFFQIRCKGSKEIYFHH----YGRYNIDKIWRDDILPCRVY 240
           +D    + RA+L + +      +I     KE+  H+    +   N + IW+D +  C   
Sbjct: 10  IDQGTTSTRAILFSAT-----LEILAVQQKELKLHYPHKGWVEQNPEAIWQDTLEVCHAV 64

Query: 241 LRHCVLAAKNLGDEAYNNFLDHTFLGDRKT 270
           L H V    ++      N  + T L DRKT
Sbjct: 65  LEHNVSMVGSVAAIGITNQRETTILWDRKT 94


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.137    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,481,627
Number of Sequences: 539616
Number of extensions: 4632173
Number of successful extensions: 8878
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 8878
Number of HSP's gapped (non-prelim): 6
length of query: 298
length of database: 191,569,459
effective HSP length: 117
effective length of query: 181
effective length of database: 128,434,387
effective search space: 23246624047
effective search space used: 23246624047
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)