Query 022361
Match_columns 298
No_of_seqs 65 out of 67
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 02:56:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022361.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022361hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06661 GGCT_like GGCT-like do 99.2 4.9E-11 1.1E-15 91.1 5.3 86 86-187 1-89 (99)
2 PF04752 ChaC: ChaC-like prote 99.1 1E-10 2.2E-15 103.7 6.9 89 84-182 1-95 (178)
3 COG3703 ChaC Uncharacterized p 98.5 1.9E-07 4E-12 84.5 6.2 84 80-175 8-95 (190)
4 PHA03014 hypothetical protein; 98.4 6.5E-07 1.4E-11 78.9 6.1 90 85-186 4-100 (163)
5 KOG3182 Predicted cation trans 98.3 2.2E-06 4.7E-11 78.4 7.0 160 77-260 3-175 (212)
6 PF06094 AIG2: AIG2-like famil 97.3 0.00043 9.2E-09 53.8 5.5 83 86-186 1-90 (102)
7 KOG4059 Uncharacterized conser 97.2 0.00034 7.4E-09 62.8 4.2 94 84-188 24-121 (193)
8 PF13772 AIG2_2: AIG2-like fam 95.8 0.0049 1.1E-07 47.8 1.7 35 153-187 2-40 (83)
9 COG2105 Uncharacterized conser 72.3 4.7 0.0001 34.7 3.5 36 145-181 47-84 (120)
10 KOG2425 Nuclear protein involv 29.1 47 0.001 35.1 2.9 70 217-286 228-301 (599)
11 TIGR00639 PurN phosphoribosylg 28.7 1.5E+02 0.0032 26.7 5.7 79 81-170 80-167 (190)
12 PLN02828 formyltetrahydrofolat 27.3 1.4E+02 0.003 28.7 5.5 86 80-171 147-236 (268)
13 cd00595 NDPk Nucleoside diphos 26.0 38 0.00081 28.4 1.3 28 270-297 81-108 (133)
14 PF07442 Ponericin: Ponericin; 22.9 32 0.0007 23.0 0.3 15 271-285 8-22 (29)
15 PRK06027 purU formyltetrahydro 22.8 98 0.0021 29.5 3.6 80 81-171 166-254 (286)
16 COG0059 IlvC Ketol-acid reduct 22.2 50 0.0011 33.1 1.6 24 67-92 6-29 (338)
17 PRK13403 ketol-acid reductoiso 21.0 57 0.0012 32.5 1.7 24 67-92 4-27 (335)
18 cd04416 NDPk_TX NDP kinase dom 20.8 39 0.00085 28.3 0.5 26 272-297 82-107 (132)
19 KOG2938 Predicted inosine-urid 20.6 52 0.0011 32.9 1.3 63 79-144 134-201 (350)
No 1
>cd06661 GGCT_like GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is encoded by the gene C7orf24, and the enzyme participates in the gamma-glutamyl cycle. Hereditary defects in the gamma-glutamyl cycle have been described for some of the genes involved, but not for C7orf24. The synthesis and metabolism of glutathione (L-gamma-glutamyl-L-cysteinylglycine) ties the gamma-glutamyl cycle to numerous cellular processes; glutathione acts as a ubiquitous reducing agent in reductive mechanisms involved in protein and DNA synthesis, transport processes, enzyme activity, and metabolism. AIG2 (avrRpt2-induced gene) is an Arabidopsis protein that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2. avrRpt2 is an avir
Probab=99.15 E-value=4.9e-11 Score=91.15 Aligned_cols=86 Identities=20% Similarity=0.306 Sum_probs=72.2
Q ss_pred EEeeccccCccccccCCCCcccceeeEEcCceEecccccchhhhcCCCCCCCccceeeeeeecCCceEEEEEEeecCCCh
Q 022361 86 ISGFGSLLSENSARSTFPNLINFRVAKLRGFRRVFAHVAPIFFERGIAKPETKEISSLSVEPCEGETLIVTVFEIKKSEI 165 (298)
Q Consensus 86 ifGYGSLVNe~SAr~tfp~l~~frpArl~GwRRvF~hta~iff~RGIa~~~trevA~LSvep~~g~~I~g~VfEVP~~d~ 165 (298)
+|+||||++.......-+.....++|++.||++.|+... ++.+++++++..+.|.|++++.++|
T Consensus 1 ~F~YGsl~~~~~~~~~~~~~~~~~~a~l~g~~l~~~~~~----------------~~p~~~~~~~~~v~G~v~~i~~~~l 64 (99)
T cd06661 1 LFVYGTLMDGEVLHARLGRALFLGPATLKGYRLVFGGGS----------------GYPGLVPGPGARVWGELYEVDPEDL 64 (99)
T ss_pred CEEeccCCChhHhHhhCCCCceEEEEEecCcEEEecCCC----------------ccCEEEeCCCCEEEEEEEEECHHHH
Confidence 699999999977655444566789999999999998532 3567889999999999999999999
Q ss_pred hhHHhhhc---cceeeeccccccCC
Q 022361 166 PAFIKREH---EFRFLAVLPETLDG 187 (298)
Q Consensus 166 ~ALdeRE~---~Y~rv~v~~~~L~g 187 (298)
..||++|- .|++..|.....++
T Consensus 65 ~~LD~~E~~~~~Y~r~~v~v~~~~~ 89 (99)
T cd06661 65 ARLDAFEGVPGGYRREEVEVELEDG 89 (99)
T ss_pred HhhhhhcCCCCCeEEEEEEEEeCCC
Confidence 99999999 79999988754444
No 2
>PF04752 ChaC: ChaC-like protein; InterPro: IPR006840 The ChaC protein is thought to be associated with the putative ChaA Ca2+/H+ cation transport protein in Escherichia coli. Its function is not known. This family also includes homologues regions from several other bacterial and eukaryotic proteins.
Probab=99.13 E-value=1e-10 Score=103.65 Aligned_cols=89 Identities=21% Similarity=0.370 Sum_probs=75.0
Q ss_pred EEEEeeccccCccccccCCCCcccceeeEEcCceEecccccchhhhcCCCCCCCccceeeeeeecCCceEEEEEEeecCC
Q 022361 84 ISISGFGSLLSENSARSTFPNLINFRVAKLRGFRRVFAHVAPIFFERGIAKPETKEISSLSVEPCEGETLIVTVFEIKKS 163 (298)
Q Consensus 84 i~ifGYGSLVNe~SAr~tfp~l~~frpArl~GwRRvF~hta~iff~RGIa~~~trevA~LSvep~~g~~I~g~VfEVP~~ 163 (298)
|-||||||||-. ..|+ ..+-++|.|+||+|.|+..... .||-+....+ .|+.++.++....|++|.||++
T Consensus 1 ~WVFGYGSLiW~----p~f~-~~e~~~a~i~Gy~R~F~~~s~~--hRGTpe~PGr---vltL~~~~~~~c~Gvayrv~~~ 70 (178)
T PF04752_consen 1 LWVFGYGSLIWN----PGFP-YAERRPAYIKGYHRRFCQGSTD--HRGTPEQPGR---VLTLDPGEEGSCWGVAYRVPEE 70 (178)
T ss_pred CEEEEeccceeC----CCCC-ccceEEEEecCcccceEeeccc--cCCCcCCCcc---eeeeeeCCCCEEEEEEEEecCc
Confidence 358999999998 3444 4568999999999999986643 6898887777 9999999999999999999985
Q ss_pred C----hhhHHhhhc--cceeeeccc
Q 022361 164 E----IPAFIKREH--EFRFLAVLP 182 (298)
Q Consensus 164 d----~~ALdeRE~--~Y~rv~v~~ 182 (298)
+ +..|++||. +|.+..+..
T Consensus 71 ~~~~~l~~L~~RE~~~Gy~~~~v~~ 95 (178)
T PF04752_consen 71 DAEEVLEYLDEREMIGGYTRHWVPF 95 (178)
T ss_pred CHHHHHHHHhhcccccccceEEEEE
Confidence 4 799999999 698877665
No 3
>COG3703 ChaC Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]
Probab=98.51 E-value=1.9e-07 Score=84.46 Aligned_cols=84 Identities=23% Similarity=0.364 Sum_probs=62.7
Q ss_pred CCCcEEEEeeccccCccccccCCCCcccceeeEEcCceEecccccchhhhcCCCCCCCccceeeeeeecCCceEEEEEEe
Q 022361 80 PDGFISISGFGSLLSENSARSTFPNLINFRVAKLRGFRRVFAHVAPIFFERGIAKPETKEISSLSVEPCEGETLIVTVFE 159 (298)
Q Consensus 80 ~~~~i~ifGYGSLVNe~SAr~tfp~l~~frpArl~GwRRvF~hta~iff~RGIa~~~trevA~LSvep~~g~~I~g~VfE 159 (298)
+...+-+|||||||-. ....|- +-++|+++||+|.|...-. .-||-++.... .|... .|-+..|++|.
T Consensus 8 ~~~~~WVFgYGSLmW~--P~f~~~---e~~~a~~~G~~Rsfc~~s~--~~RGT~~~PGl---vl~L~--~GGsc~GvafR 75 (190)
T COG3703 8 DPDELWVFGYGSLMWN--PGFEFT---EVRRATLHGYHRSFCLRST--DHRGTAEQPGL---VLGLD--RGGSCEGVAYR 75 (190)
T ss_pred CCCCeEEEEecceeec--CCcccc---ceeEEEEecceeEEEEEEe--eecCCcCCCce---EEEee--CCCcEEEEEEE
Confidence 3344999999999988 334433 5889999999999997553 35887766665 33333 88899999999
Q ss_pred ecC----CChhhHHhhhccc
Q 022361 160 IKK----SEIPAFIKREHEF 175 (298)
Q Consensus 160 VP~----~d~~ALdeRE~~Y 175 (298)
||+ +.+.-|.+||--|
T Consensus 76 ip~~~~~~v~~yL~~RE~~~ 95 (190)
T COG3703 76 IPEAHAEEVLEYLREREMNY 95 (190)
T ss_pred cCchhhHHHHHHHHHhhccc
Confidence 994 4557799999843
No 4
>PHA03014 hypothetical protein; Provisional
Probab=98.37 E-value=6.5e-07 Score=78.86 Aligned_cols=90 Identities=13% Similarity=0.191 Sum_probs=71.3
Q ss_pred EEEeeccccCccccccCCC---CcccceeeEEcCceEecccccchhhhcCCCCCCCccceeeeeeecCCceEEEEEEeec
Q 022361 85 SISGFGSLLSENSARSTFP---NLINFRVAKLRGFRRVFAHVAPIFFERGIAKPETKEISSLSVEPCEGETLIVTVFEIK 161 (298)
Q Consensus 85 ~ifGYGSLVNe~SAr~tfp---~l~~frpArl~GwRRvF~hta~iff~RGIa~~~trevA~LSvep~~g~~I~g~VfEVP 161 (298)
.+|+|||=||....+..-| .-.....|+|.||+=.+...+. ..=+..|++|++|..+-|+|.||+
T Consensus 4 ~YfAYGSNl~~~qm~~Rcp~~~~a~~vg~a~L~~~~~~L~f~~~------------~~Ga~ATIvp~~g~~V~Gvlw~i~ 71 (163)
T PHA03014 4 YYFGYGANQNINYLIHMHKLKIDFLNIKIGIILGHSFKLCYSKE------------IDSVIASIKKDDNGIVFGILYEFN 71 (163)
T ss_pred EEEEEccCcCHHHHHHhCCCCCCCceEEEEEeeccceEEeccCC------------cCCceEEEEECCCCEEEEEEEEeC
Confidence 5799999999999888888 7666778999966433332221 222578999999999999999999
Q ss_pred CCChhhHHhhhc----cceeeeccccccC
Q 022361 162 KSEIPAFIKREH----EFRFLAVLPETLD 186 (298)
Q Consensus 162 ~~d~~ALdeRE~----~Y~rv~v~~~~L~ 186 (298)
++|+.+||.-|- -|+++.|....+.
T Consensus 72 ~~dl~~LD~~EGvp~~~Y~~~~v~V~~~~ 100 (163)
T PHA03014 72 ESIMKKFDKQEFIDKNIYKLAKMNVLDLE 100 (163)
T ss_pred HHHHHHHhhhcCCCcCceEEEEEEEEeCC
Confidence 999999999997 3888887764433
No 5
>KOG3182 consensus Predicted cation transporter [Inorganic ion transport and metabolism]
Probab=98.26 E-value=2.2e-06 Score=78.38 Aligned_cols=160 Identities=19% Similarity=0.232 Sum_probs=110.0
Q ss_pred ccCCCCcEEEEeeccccCccccccCCCCcccceeeEEcCceEecccccchhhhcCCCCCCCccceeeeeeecCCceEEEE
Q 022361 77 ITSPDGFISISGFGSLLSENSARSTFPNLINFRVAKLRGFRRVFAHVAPIFFERGIAKPETKEISSLSVEPCEGETLIVT 156 (298)
Q Consensus 77 ~~~~~~~i~ifGYGSLVNe~SAr~tfp~l~~frpArl~GwRRvF~hta~iff~RGIa~~~trevA~LSvep~~g~~I~g~ 156 (298)
-.|+++.+=|||||||+=.-- .+|.+ -+++-++||+|+|=.-.. .-||.++...| .+|.+|.+...--|+
T Consensus 3 ~~s~~~~lWVFGYGSLiW~Pg--f~y~~---~~~gfI~Gy~RrF~q~s~--dHRGtp~~PGR---v~TLi~~~e~~~wGv 72 (212)
T KOG3182|consen 3 TTSDPMALWVFGYGSLIWKPG--FHYDE---SIPGFIKGYKRRFWQGST--DHRGTPEHPGR---VATLIPYEEAITWGV 72 (212)
T ss_pred CCCCCceEEEEeecceeecCC--CCccc---cchhhheehhhheecccc--ccCCCCCCCce---eEEeecCCcceEeeE
Confidence 356788999999999998733 55554 889999999999876432 47999999888 788999888877999
Q ss_pred EEeecCC----ChhhHHhhhc-cceeeecccc--ccCCCCCccceeecccCCchhHHHhhhcCCchhhhhhhcccCCccc
Q 022361 157 VFEIKKS----EIPAFIKREH-EFRFLAVLPE--TLDGKPFTNRAVLCARSSDEEFFQIRCKGSKEIYFHHYGRYNIDKI 229 (298)
Q Consensus 157 VfEVP~~----d~~ALdeRE~-~Y~rv~v~~~--~L~g~p~~~~av~c~r~sD~sYldvvcqg~~e~y~~~~G~~Gi~~i 229 (298)
++.|++. -+.=|+-||- +|.+..|..+ +-+..|.....+.|..-.|..| |+ |..-...+
T Consensus 73 ay~V~g~~~~~~l~yl~~RE~nGY~~~~v~f~~e~~~~~p~v~~vlvyvaTp~N~~-----------yl---Gp~ple~i 138 (212)
T KOG3182|consen 73 AYRVRGKQASEVLEYLNVRELNGYTTHEVEFYPEDAAELPEVLGVLVYVATPDNEY-----------YL---GPAPLEEI 138 (212)
T ss_pred EEEecchhHHHHHHHHHHHhhcCcceeeeeeeccCCCCCCceEEEEEEEecCCCcc-----------cc---CCccHHHH
Confidence 9999863 3456778887 8888888863 2232343444555553333222 22 33322222
Q ss_pred ------ccCCCCCCchhhhhhhHHHhhhcHHHHHhhh
Q 022361 230 ------WRDDILPCRVYLRHCVLAAKNLGDEAYNNFL 260 (298)
Q Consensus 230 ------W~~pILP~p~YlRHcvLaA~~lG~~~~~~FL 260 (298)
=+.|==|++-||.---.+-..++..+-|..|
T Consensus 139 ArqI~t~~GpsG~N~eYLf~La~am~~l~p~~~D~hl 175 (212)
T KOG3182|consen 139 ARQIVTARGPSGPNREYLFNLAKAMRQLFPGAEDEHL 175 (212)
T ss_pred HHHHHhccCCCCCcHHHHHHHHHHHHHcCCCchhHHH
Confidence 2567777899998777777777665555433
No 6
>PF06094 AIG2: AIG2-like family; InterPro: IPR009288 AIG2 is an Arabidopsis protein that exhibit RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2 []. Its structure consists of a five-stranded beta-barrel surrounded by two alpha-helices and a small beta-sheet. A long flexible alpha-helix protrudes from the structure at the C-terminal end. Conserved residues in a hydrophilic cavity, which are able to bind small ligands, may act as an active site in AIG2-like proteins [].; PDB: 1XHS_A 2KL2_A 1VKB_A 3JUD_A 3JUB_A 3JUC_A 2JQV_A 2QIK_A 2G0Q_A 1V30_A.
Probab=97.35 E-value=0.00043 Score=53.81 Aligned_cols=83 Identities=19% Similarity=0.179 Sum_probs=55.6
Q ss_pred EEeeccccCccccccCCCC---cccceeeEEcCceEecccccchhhhcCCCCCCCccceeeeeeecCCc-eEEEEEEeec
Q 022361 86 ISGFGSLLSENSARSTFPN---LINFRVAKLRGFRRVFAHVAPIFFERGIAKPETKEISSLSVEPCEGE-TLIVTVFEIK 161 (298)
Q Consensus 86 ifGYGSLVNe~SAr~tfp~---l~~frpArl~GwRRvF~hta~iff~RGIa~~~trevA~LSvep~~g~-~I~g~VfEVP 161 (298)
+|-||||++.....+.++. -...+++.+. ++.+... -.+=.+.++++. .|.|.|++|+
T Consensus 1 lFvYGTL~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----------------~~yP~l~~~~~~~~V~G~l~~v~ 62 (102)
T PF06094_consen 1 LFVYGTLMDGEVNHSVLGRPGAKFIGEPATLG--GRYLYGG----------------GGYPALVPGEGSGRVEGELYEVD 62 (102)
T ss_dssp EEESSTTSTTSTTGHHGTSGSSEEEEEEEEEE--EEEEETT----------------SSCEEEESCTTSSEEEEEEEEE-
T ss_pred CEEECCCCCCCcChhhhhccceEEEEeeEEEE--eEEEeCC----------------CCCCEEEEcCCCCEEEEEEEEEC
Confidence 6999999999775555542 1112333333 2222211 125577788887 9999999999
Q ss_pred CCChhhHHhhhc---cceeeeccccccC
Q 022361 162 KSEIPAFIKREH---EFRFLAVLPETLD 186 (298)
Q Consensus 162 ~~d~~ALdeRE~---~Y~rv~v~~~~L~ 186 (298)
.++++.||+-|- .|+|..+....-+
T Consensus 63 ~~~l~~LD~~E~~~~~Y~R~~v~v~~~~ 90 (102)
T PF06094_consen 63 DEELARLDEYEGEGSLYRRVRVPVELGD 90 (102)
T ss_dssp HHHHHHHHHHTTTTTSEEEEEEEEECCT
T ss_pred HHHHHhhHhhcCCCCceEEEEEEEEeCC
Confidence 999999999973 8999888764333
No 7
>KOG4059 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.00034 Score=62.79 Aligned_cols=94 Identities=23% Similarity=0.302 Sum_probs=70.5
Q ss_pred EEEEeeccccCccccccCCCCcccceeeEEcCceEecccccchhhhcCCCCCCCccceeeeeeecCCceEEEEEEeecCC
Q 022361 84 ISISGFGSLLSENSARSTFPNLINFRVAKLRGFRRVFAHVAPIFFERGIAKPETKEISSLSVEPCEGETLIVTVFEIKKS 163 (298)
Q Consensus 84 i~ifGYGSLVNe~SAr~tfp~l~~frpArl~GwRRvF~hta~iff~RGIa~~~trevA~LSvep~~g~~I~g~VfEVP~~ 163 (298)
..+|+|||=|=.+--+..=|.-.-+-+|+|..||=-|+.+.. +-.=+.-++.|.+|..+=|+|-.++.+
T Consensus 24 FlYFafGSNlL~~RIh~rnpsA~~~c~a~L~dfrLdFan~S~-----------~W~G~vATI~~t~GdeVWG~vWKm~~s 92 (193)
T KOG4059|consen 24 FLYFAFGSNLLIKRIHIRNPSAVRICPALLPDFRLDFANESA-----------GWSGSVATIVPTQGDEVWGTVWKMDLS 92 (193)
T ss_pred hhhhhcccchhhhheeecCCCceeeccccCcceeeecccccc-----------ccccceeEEecCCCCeEEEEEEEcccc
Confidence 689999995544222222233455668999999999998541 233357799999999999999999999
Q ss_pred ChhhHHhhh---cc-ceeeeccccccCCC
Q 022361 164 EIPAFIKRE---HE-FRFLAVLPETLDGK 188 (298)
Q Consensus 164 d~~ALdeRE---~~-Y~rv~v~~~~L~g~ 188 (298)
.++.|||.| .+ |+++.|-...-.|.
T Consensus 93 nl~slDeQEgv~~G~Y~~~~V~V~t~eg~ 121 (193)
T KOG4059|consen 93 NLPSLDEQEGVSQGIYEPRTVYVKTHEGE 121 (193)
T ss_pred cCccchhhhcccccceEEEEEEEecCCCc
Confidence 999999999 77 99988775333443
No 8
>PF13772 AIG2_2: AIG2-like family; PDB: 2QIK_A 2RBH_B 2I5T_B 2Q53_A 2PN7_B 3CRY_A.
Probab=95.80 E-value=0.0049 Score=47.76 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=30.1
Q ss_pred EEEEEEeecCCChhhHHhhhc----cceeeeccccccCC
Q 022361 153 LIVTVFEIKKSEIPAFIKREH----EFRFLAVLPETLDG 187 (298)
Q Consensus 153 I~g~VfEVP~~d~~ALdeRE~----~Y~rv~v~~~~L~g 187 (298)
+-|+|++++.+|+++||.+|- .|++..|....-+|
T Consensus 2 V~Gvly~l~~~d~~~LD~~Eg~~~g~Y~~~~v~V~~~~g 40 (83)
T PF13772_consen 2 VWGVLYELSEEDLESLDRYEGVPIGAYRRIEVTVSTADG 40 (83)
T ss_dssp EEEEEEEEEGGGHHHHHHHTTTTTTSEEEEEEEEEETTC
T ss_pred EEEEEEEECHHHHHHHHHhcCCCCCCEEEEEEEEEcCCC
Confidence 679999999999999999998 69999888754454
No 9
>COG2105 Uncharacterized conserved protein [Function unknown]
Probab=72.34 E-value=4.7 Score=34.66 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=29.9
Q ss_pred eeecCCceEEEEEEeecCCChhhHHhhhcc--ceeeecc
Q 022361 145 VEPCEGETLIVTVFEIKKSEIPAFIKREHE--FRFLAVL 181 (298)
Q Consensus 145 vep~~g~~I~g~VfEVP~~d~~ALdeRE~~--Y~rv~v~ 181 (298)
+.|+++ .|.|-|.+|+++-|++||+=|.. |.|+.+.
T Consensus 47 ~~~g~~-~V~Gevy~~d~~~l~~LDelE~~~~y~r~~v~ 84 (120)
T COG2105 47 LVPGEG-KVHGEVYRIDEETLEALDELEDYGGYYRREVE 84 (120)
T ss_pred EcCCCC-EEEEEEEEECHHHHhhhhhhhccCceEEEEEE
Confidence 445555 89999999999999999999984 5888773
No 10
>KOG2425 consensus Nuclear protein involved in cell morphogenesis and cell surface growth [General function prediction only]
Probab=29.08 E-value=47 Score=35.14 Aligned_cols=70 Identities=21% Similarity=0.238 Sum_probs=43.3
Q ss_pred hhhhhccc----CCcccccCCCCCCchhhhhhhHHHhhhcHHHHHhhhhccccccccchHHHHHhhcCCCCCcC
Q 022361 217 YFHHYGRY----NIDKIWRDDILPCRVYLRHCVLAAKNLGDEAYNNFLDHTFLGDRKTTIREYLATTGAGIMEE 286 (298)
Q Consensus 217 y~~~~G~~----Gi~~iW~~pILP~p~YlRHcvLaA~~lG~~~~~~FLdtTyLaDr~Ttir~yL~~~~~~im~e 286 (298)
|+-.||++ .+-++|.+.|---+...---+--+-.-=+.++++|+||-++.-----+|.++++..|+|||-
T Consensus 228 y~~vwe~a~~~~~~~k~~~sli~~~e~~~aEL~~v~~E~l~~~ldSf~dd~~~~~~~edlr~~qeewk~~~~e~ 301 (599)
T KOG2425|consen 228 YFTVWEKARYLPKAIKAWNSLIPRVECVLAELVGVTCENLEAVLDSFLDDGFLVPTFEDLRALQEEWKDGQTEV 301 (599)
T ss_pred HHHHHhhcccchhHHHHhhchhhhhHHHHHHHHHHHHHhhhhhhhhhhccccccccHHHHHHHHHHhcccchhc
Confidence 44455555 33446877653222222111112222236789999999998765567999999999999974
No 11
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=28.68 E-value=1.5e+02 Score=26.67 Aligned_cols=79 Identities=18% Similarity=0.231 Sum_probs=48.1
Q ss_pred CCcEEEEeeccccCccccccCCCC-cccceeeEEcCceEecccccchhh--hcCCCCCCCccceeeeeee-----cCCce
Q 022361 81 DGFISISGFGSLLSENSARSTFPN-LINFRVAKLRGFRRVFAHVAPIFF--ERGIAKPETKEISSLSVEP-----CEGET 152 (298)
Q Consensus 81 ~~~i~ifGYGSLVNe~SAr~tfp~-l~~frpArl~GwRRvF~hta~iff--~RGIa~~~trevA~LSvep-----~~g~~ 152 (298)
...+-.+|||.++.+.- ...|+. ..|+||+.|.-||= ..+++| .+| ....-+|+.. |.|..
T Consensus 80 ~D~iv~~~~~~il~~~~-l~~~~~~~iNiHpslLP~yrG----~~p~~~ai~~g------~~~tGvTih~v~~~~D~G~I 148 (190)
T TIGR00639 80 VDLVVLAGFMRILGPTF-LSRFAGRILNIHPSLLPAFPG----LHAVEQALEAG------VKESGCTVHYVDEEVDTGPI 148 (190)
T ss_pred CCEEEEeCcchhCCHHH-HhhccCCEEEEeCCcccCCCC----ccHHHHHHHcC------CCeEEEEEEEEcCCCcCCCE
Confidence 45688899999998854 223443 89999999999873 334432 344 1223344433 56666
Q ss_pred EEEEEEeec-CCChhhHHh
Q 022361 153 LIVTVFEIK-KSEIPAFIK 170 (298)
Q Consensus 153 I~g~VfEVP-~~d~~ALde 170 (298)
|.-..++|. ++....|.+
T Consensus 149 i~q~~~~i~~~dt~~~L~~ 167 (190)
T TIGR00639 149 IAQAKVPILPEDTEETLEQ 167 (190)
T ss_pred EEEEEEEcCCCCCHHHHHH
Confidence 666677774 444444443
No 12
>PLN02828 formyltetrahydrofolate deformylase
Probab=27.31 E-value=1.4e+02 Score=28.66 Aligned_cols=86 Identities=17% Similarity=0.303 Sum_probs=57.5
Q ss_pred CCCcEEEEeeccccCccccccCCCC-cccceeeEEcCceEecccccch--hhhcCCCCCCCccceeeeeeecCCceEEEE
Q 022361 80 PDGFISISGFGSLLSENSARSTFPN-LINFRVAKLRGFRRVFAHVAPI--FFERGIAKPETKEISSLSVEPCEGETLIVT 156 (298)
Q Consensus 80 ~~~~i~ifGYGSLVNe~SAr~tfp~-l~~frpArl~GwRRvF~hta~i--ff~RGIa~~~trevA~LSvep~~g~~I~g~ 156 (298)
....|-..||+.+|+..- ...||+ +.|+||+-|..||= ..++ -+.+|..- -+--+=+.+.+-|.|-.|.=.
T Consensus 147 ~~DliVLAgym~IL~~~~-l~~~~~riINIHpSlLP~f~G----a~p~~~Ai~~Gvk~-tG~TvH~V~~~lD~GpII~Q~ 220 (268)
T PLN02828 147 GTDFLVLARYMQILSGNF-LKGYGKDIINIHHGLLPSFKG----GNPSKQAFDAGVKL-IGATSHFVTEELDAGPIIEQM 220 (268)
T ss_pred cCCEEEEeeehHhCCHHH-HhhccCCEEEecCccCCCCCC----CcHHHHHHHcCCCe-EEEEEEEEcCCCCCCCeeEEE
Confidence 356789999999999853 455665 99999999999972 2233 24666311 011122344445788888888
Q ss_pred EEeec-CCChhhHHhh
Q 022361 157 VFEIK-KSEIPAFIKR 171 (298)
Q Consensus 157 VfEVP-~~d~~ALdeR 171 (298)
+..|. .+.+..|.+|
T Consensus 221 ~v~V~~~dt~~~L~~r 236 (268)
T PLN02828 221 VERVSHRDNLRSFVQK 236 (268)
T ss_pred EEecCCCCCHHHHHHH
Confidence 88884 6677777664
No 13
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=26.02 E-value=38 Score=28.39 Aligned_cols=28 Identities=32% Similarity=0.513 Sum_probs=21.5
Q ss_pred chHHHHHhhcCCCCCcCCCCchhhhhcC
Q 022361 270 TTIREYLATTGAGIMEEAPPESLKTRYG 297 (298)
Q Consensus 270 Ttir~yL~~~~~~im~e~pp~~l~~ry~ 297 (298)
..+|+.+--++|.+..+..|.+|+.+||
T Consensus 81 ~~~r~l~Gp~~p~~a~~~~p~siR~~~g 108 (133)
T cd00595 81 GEWREMLGPTNPEIARHLAPGSLRADFG 108 (133)
T ss_pred HHHHHHhCCCChhHhccCCCCChHHHhc
Confidence 3456666556777787889999999998
No 14
>PF07442 Ponericin: Ponericin; InterPro: IPR010002 This family contains a number of ponericin peptides (approximately 30 residues long) from the venom of the predatory ant Pachycondyla goeldii (Ponerine ant). These peptides exhibit antibacterial and insecticidal properties, and may adopt an amphipathic alpha-helical structure in polar environments such as cell membranes [].; GO: 0005576 extracellular region
Probab=22.95 E-value=32 Score=23.03 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=12.3
Q ss_pred hHHHHHhhcCCCCCc
Q 022361 271 TIREYLATTGAGIME 285 (298)
Q Consensus 271 tir~yL~~~~~~im~ 285 (298)
+-.+||++.+|+||.
T Consensus 8 ~~~~wlkkkgpgi~k 22 (29)
T PF07442_consen 8 KAGEWLKKKGPGILK 22 (29)
T ss_pred HHHHHHHhcCchHHH
Confidence 346899999999985
No 15
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=22.84 E-value=98 Score=29.52 Aligned_cols=80 Identities=19% Similarity=0.411 Sum_probs=55.1
Q ss_pred CCcEEEEeeccccCccccccCCCC-cccceeeEEcCceEecccccchh--hhcCCCCCCCccceeeeee-----ecCCce
Q 022361 81 DGFISISGFGSLLSENSARSTFPN-LINFRVAKLRGFRRVFAHVAPIF--FERGIAKPETKEISSLSVE-----PCEGET 152 (298)
Q Consensus 81 ~~~i~ifGYGSLVNe~SAr~tfp~-l~~frpArl~GwRRvF~hta~if--f~RGIa~~~trevA~LSve-----p~~g~~ 152 (298)
...|-.+||+.++... ....|+. +.|+||+.|.-||=. .+++ +..| ...+-+|+- -|.|..
T Consensus 166 ~Dlivlagy~~il~~~-~l~~~~~~iiNiHpSLLP~yrG~----~~~~~ai~~G------~~~tG~TiH~v~~~~D~G~I 234 (286)
T PRK06027 166 PDLVVLARYMQILSPD-FVARFPGRIINIHHSFLPAFKGA----KPYHQAYERG------VKLIGATAHYVTADLDEGPI 234 (286)
T ss_pred CCEEEEecchhhcCHH-HHhhccCCceecCcccCCCCCCC----CHHHHHHHCC------CCeEEEEEEEEcCCCcCCCc
Confidence 4679999999999974 3455665 999999999999842 2222 2344 233444444 467777
Q ss_pred EEEEEEee-cCCChhhHHhh
Q 022361 153 LIVTVFEI-KKSEIPAFIKR 171 (298)
Q Consensus 153 I~g~VfEV-P~~d~~ALdeR 171 (298)
|.=..+.| +++.+..|.+|
T Consensus 235 i~Q~~v~i~~~dt~~~L~~r 254 (286)
T PRK06027 235 IEQDVIRVDHRDTAEDLVRA 254 (286)
T ss_pred EEEEEEEcCCCCCHHHHHHH
Confidence 87777777 46677777766
No 16
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=22.20 E-value=50 Score=33.05 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=18.6
Q ss_pred ccCCCCccccccCCCCcEEEEeeccc
Q 022361 67 QLNDESDFYQITSPDGFISISGFGSL 92 (298)
Q Consensus 67 ~~~~~~d~~~~~~~~~~i~ifGYGSL 92 (298)
.+..+.|++-|. ++.|.|+||||=
T Consensus 6 yyd~da~l~~Lk--gK~iaIIGYGsQ 29 (338)
T COG0059 6 YYDEDADLDLLK--GKKVAIIGYGSQ 29 (338)
T ss_pred eecccCChhHhc--CCeEEEEecChH
Confidence 456677888554 789999999994
No 17
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=20.98 E-value=57 Score=32.53 Aligned_cols=24 Identities=13% Similarity=0.356 Sum_probs=20.1
Q ss_pred ccCCCCccccccCCCCcEEEEeeccc
Q 022361 67 QLNDESDFYQITSPDGFISISGFGSL 92 (298)
Q Consensus 67 ~~~~~~d~~~~~~~~~~i~ifGYGSL 92 (298)
.+..+.|+..|. ++.|.|+||||.
T Consensus 4 ~~~~d~~~~~Lk--gKtVGIIG~GsI 27 (335)
T PRK13403 4 YYEKDANVELLQ--GKTVAVIGYGSQ 27 (335)
T ss_pred eccccCChhhhC--cCEEEEEeEcHH
Confidence 356678898888 788999999986
No 18
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=20.80 E-value=39 Score=28.35 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=19.6
Q ss_pred HHHHHhhcCCCCCcCCCCchhhhhcC
Q 022361 272 IREYLATTGAGIMEEAPPESLKTRYG 297 (298)
Q Consensus 272 ir~yL~~~~~~im~e~pp~~l~~ry~ 297 (298)
.|+.+-.++|.+.....|.+|+.+||
T Consensus 82 ~r~l~Gp~~p~~A~~~~p~slR~~fg 107 (132)
T cd04416 82 WRELMGPTDPEEAKEEKPDSLRAQFA 107 (132)
T ss_pred HHHHhCCCChHHhhccCCCChHHHhc
Confidence 45555455677777778999999998
No 19
>KOG2938 consensus Predicted inosine-uridine preferring nucleoside hydrolase [Nucleotide transport and metabolism]
Probab=20.62 E-value=52 Score=32.89 Aligned_cols=63 Identities=25% Similarity=0.256 Sum_probs=43.9
Q ss_pred CCCCcEEEEeeccccCccccccCCCC-cccceeeEEcCceEe----cccccchhhhcCCCCCCCccceeee
Q 022361 79 SPDGFISISGFGSLLSENSARSTFPN-LINFRVAKLRGFRRV----FAHVAPIFFERGIAKPETKEISSLS 144 (298)
Q Consensus 79 ~~~~~i~ifGYGSLVNe~SAr~tfp~-l~~frpArl~GwRRv----F~hta~iff~RGIa~~~trevA~LS 144 (298)
.-.+.|+||.||-|.|.+.+...+|+ .++++-.++.|=++- .+|.+.-.|-+ +|+..++..-+
T Consensus 134 ~~p~~It~va~GPLTNlAla~~~~pd~~~~v~~ivimGG~~~~~gnv~~~AefN~~~---DPeAA~~vl~~ 201 (350)
T KOG2938|consen 134 AYPGEITIVAYGPLTNLALALALDPDFLKNVKRIVIMGGNYYGNGNVTHGAEFNFYR---DPEAAHTVLTR 201 (350)
T ss_pred cCCCCceEEEeccchHHHHHhhcChhHhhccccEEEeccccccccCcCccccccccC---ChHHHHHHHhc
Confidence 45789999999999999999999999 677777777765554 33333321222 66666654443
Done!