Query 022363
Match_columns 298
No_of_seqs 50 out of 52
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 02:57:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022363.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022363hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0853 Glycosyltransferase [C 99.9 3.7E-25 7.9E-30 220.1 2.7 274 1-283 1-286 (495)
2 cd03807 GT1_WbnK_like This fam 98.6 1.2E-06 2.5E-11 75.3 14.2 181 76-283 1-206 (365)
3 cd03812 GT1_CapH_like This fam 98.4 7.5E-06 1.6E-10 72.7 14.4 186 76-283 1-205 (358)
4 cd03811 GT1_WabH_like This fam 98.4 2.7E-06 5.8E-11 72.3 10.3 187 76-282 1-201 (353)
5 cd03821 GT1_Bme6_like This fam 98.3 2E-05 4.4E-10 68.0 13.1 189 76-283 1-216 (375)
6 cd03805 GT1_ALG2_like This fam 98.3 7.2E-06 1.6E-10 74.8 10.2 180 75-283 1-224 (392)
7 cd03823 GT1_ExpE7_like This fa 98.2 4.7E-05 1E-09 66.0 12.9 177 76-283 1-204 (359)
8 cd03819 GT1_WavL_like This fam 98.1 3.8E-05 8.3E-10 68.1 11.7 173 84-283 7-198 (355)
9 PF13439 Glyco_transf_4: Glyco 98.1 5.5E-06 1.2E-10 65.7 5.6 140 77-229 2-166 (177)
10 cd04951 GT1_WbdM_like This fam 98.1 6.1E-05 1.3E-09 66.6 12.7 182 76-283 1-201 (360)
11 cd03798 GT1_wlbH_like This fam 98.1 6.9E-05 1.5E-09 64.1 11.9 189 77-282 1-214 (377)
12 cd03794 GT1_wbuB_like This fam 98.1 3.2E-05 7E-10 66.7 9.8 185 76-283 1-233 (394)
13 TIGR03088 stp2 sugar transfera 98.1 9.1E-05 2E-09 67.7 13.2 178 75-283 2-207 (374)
14 cd04962 GT1_like_5 This family 98.0 7E-05 1.5E-09 67.3 11.6 180 76-283 2-210 (371)
15 cd03801 GT1_YqgM_like This fam 98.0 5E-05 1.1E-09 64.4 9.8 184 76-283 1-212 (374)
16 PRK10307 putative glycosyl tra 98.0 0.0001 2.2E-09 69.1 11.8 185 75-283 1-242 (412)
17 cd03809 GT1_mtfB_like This fam 97.9 3.6E-05 7.7E-10 67.3 7.5 179 76-283 1-208 (365)
18 cd03817 GT1_UGDG_like This fam 97.9 0.00021 4.6E-09 61.9 11.4 191 76-283 1-215 (374)
19 cd03802 GT1_AviGT4_like This f 97.8 8.2E-05 1.8E-09 65.5 7.7 127 75-219 1-148 (335)
20 cd03825 GT1_wcfI_like This fam 97.7 0.00037 8E-09 61.8 10.3 81 76-187 2-86 (365)
21 cd03792 GT1_Trehalose_phosphor 97.6 0.00069 1.5E-08 62.6 10.8 186 76-283 1-203 (372)
22 cd04955 GT1_like_6 This family 97.5 0.0022 4.9E-08 56.9 13.0 171 76-283 1-206 (363)
23 cd03822 GT1_ecORF704_like This 97.5 0.0014 3.1E-08 57.4 11.3 40 76-115 1-41 (366)
24 cd03820 GT1_amsD_like This fam 97.5 0.0014 3E-08 55.8 11.0 131 76-214 1-147 (348)
25 cd03800 GT1_Sucrose_synthase T 97.5 0.0013 2.9E-08 59.3 11.3 184 77-282 9-232 (398)
26 cd03795 GT1_like_4 This family 97.4 0.0023 5E-08 56.6 11.6 181 76-283 1-204 (357)
27 cd03808 GT1_cap1E_like This fa 97.4 0.0034 7.3E-08 53.8 11.6 133 76-222 1-158 (359)
28 TIGR02149 glgA_Coryne glycogen 97.3 0.0028 6.1E-08 57.8 11.0 172 76-283 2-214 (388)
29 PF13579 Glyco_trans_4_4: Glyc 97.1 0.0018 3.8E-08 50.5 6.3 124 87-229 1-156 (160)
30 cd03814 GT1_like_2 This family 97.0 0.0054 1.2E-07 53.5 9.0 188 76-282 1-209 (364)
31 PLN02871 UDP-sulfoquinovose:DA 96.9 0.06 1.3E-06 52.3 16.3 198 70-286 54-279 (465)
32 TIGR03449 mycothiol_MshA UDP-N 96.8 0.011 2.4E-07 54.9 10.5 175 86-283 19-232 (405)
33 cd03796 GT1_PIG-A_like This fa 96.5 0.04 8.8E-07 51.8 12.0 40 76-115 1-42 (398)
34 cd03799 GT1_amsK_like This is 96.5 0.087 1.9E-06 46.6 13.1 131 76-221 1-149 (355)
35 PRK15179 Vi polysaccharide bio 96.5 0.077 1.7E-06 56.1 14.8 63 67-137 276-354 (694)
36 cd01635 Glycosyltransferase_GT 96.4 0.021 4.6E-07 46.5 8.4 86 77-190 1-88 (229)
37 PRK09922 UDP-D-galactose:(gluc 96.4 0.029 6.2E-07 52.1 9.9 133 75-220 1-151 (359)
38 cd03791 GT1_Glycogen_synthase_ 96.2 0.061 1.3E-06 51.6 11.5 37 76-112 1-41 (476)
39 PRK13609 diacylglycerol glucos 96.0 0.18 4E-06 47.0 13.3 175 73-271 3-203 (380)
40 PF13477 Glyco_trans_4_2: Glyc 96.0 0.1 2.2E-06 41.4 10.1 97 76-188 1-110 (139)
41 PRK15484 lipopolysaccharide 1, 95.9 0.14 3.1E-06 48.5 12.4 162 86-283 20-206 (380)
42 PRK00726 murG undecaprenyldiph 95.9 0.12 2.6E-06 47.6 11.4 38 75-114 2-39 (357)
43 cd03785 GT1_MurG MurG is an N- 95.8 0.3 6.5E-06 44.3 13.3 31 85-115 8-38 (350)
44 PRK00654 glgA glycogen synthas 95.8 0.27 6E-06 48.1 14.0 38 76-113 2-43 (466)
45 cd03816 GT1_ALG1_like This fam 95.6 0.29 6.2E-06 47.2 13.1 134 73-229 2-187 (415)
46 cd03818 GT1_ExpC_like This fam 95.1 0.14 3.1E-06 48.0 9.1 36 76-116 1-36 (396)
47 TIGR02095 glgA glycogen/starch 94.4 0.95 2.1E-05 44.1 13.1 38 76-113 2-43 (473)
48 PRK14099 glycogen synthase; Pr 94.0 0.91 2E-05 45.5 12.5 40 72-111 1-44 (485)
49 TIGR01133 murG undecaprenyldip 93.8 0.96 2.1E-05 41.0 11.3 37 76-114 2-38 (348)
50 PRK10125 putative glycosyl tra 93.3 0.75 1.6E-05 44.8 10.2 42 75-116 1-42 (405)
51 TIGR03087 stp1 sugar transfera 92.1 0.51 1.1E-05 44.5 7.2 36 77-113 1-39 (397)
52 TIGR02472 sucr_P_syn_N sucrose 91.4 2.4 5.2E-05 41.1 11.1 28 86-113 25-54 (439)
53 cd01979 Pchlide_reductase_N Pc 91.3 1.2 2.6E-05 43.4 9.0 101 69-188 271-374 (396)
54 TIGR01279 DPOR_bchN light-inde 91.3 1.1 2.4E-05 44.1 8.7 85 69-163 269-356 (407)
55 cd05844 GT1_like_7 Glycosyltra 91.1 3.4 7.4E-05 37.2 11.0 128 80-220 4-160 (367)
56 CHL00073 chlN photochlorophyll 90.7 0.97 2.1E-05 46.0 7.9 82 68-158 308-399 (457)
57 PLN02316 synthase/transferase 90.2 5.7 0.00012 44.5 13.8 197 75-283 588-853 (1036)
58 PRK02842 light-independent pro 89.6 2.1 4.4E-05 42.4 9.0 102 68-188 284-389 (427)
59 PRK02006 murD UDP-N-acetylmura 89.4 1.9 4E-05 43.0 8.6 86 72-173 5-98 (498)
60 cd03804 GT1_wbaZ_like This fam 89.3 1.5 3.2E-05 40.0 7.2 31 77-108 2-34 (351)
61 PRK00421 murC UDP-N-acetylmura 88.6 2.7 5.8E-05 41.4 9.0 86 70-173 3-91 (461)
62 PF04464 Glyphos_transf: CDP-G 86.3 6.4 0.00014 37.1 9.7 172 72-273 11-195 (369)
63 PRK01438 murD UDP-N-acetylmura 86.2 2.7 5.9E-05 41.3 7.5 76 72-161 14-89 (480)
64 PF00148 Oxidored_nitro: Nitro 86.2 3.4 7.4E-05 39.5 8.0 112 69-193 266-382 (398)
65 PRK00025 lpxB lipid-A-disaccha 85.6 11 0.00024 35.0 10.8 34 76-112 3-36 (380)
66 cd03806 GT1_ALG11_like This fa 85.6 9.2 0.0002 37.2 10.7 39 77-115 3-44 (419)
67 PRK01710 murD UDP-N-acetylmura 85.5 4.6 9.9E-05 39.9 8.7 92 69-173 9-102 (458)
68 PLN02605 monogalactosyldiacylg 85.4 2.9 6.4E-05 39.6 7.1 110 148-277 98-213 (382)
69 PRK14106 murD UDP-N-acetylmura 84.5 10 0.00022 36.8 10.5 85 72-169 3-89 (450)
70 TIGR00215 lpxB lipid-A-disacch 84.5 4.5 9.8E-05 39.1 8.0 31 84-114 12-42 (385)
71 PF05690 ThiG: Thiazole biosyn 84.0 3.1 6.7E-05 39.7 6.4 85 77-161 96-208 (247)
72 PLN02275 transferase, transfer 83.4 13 0.00027 35.3 10.4 40 74-115 5-44 (371)
73 PRK00141 murD UDP-N-acetylmura 83.4 5.3 0.00012 39.8 8.2 92 65-173 6-99 (473)
74 TIGR01283 nifE nitrogenase mol 82.8 7.6 0.00017 38.7 9.0 105 70-193 322-429 (456)
75 PRK02472 murD UDP-N-acetylmura 82.3 13 0.00029 35.9 10.3 88 72-173 3-93 (447)
76 PF04007 DUF354: Protein of un 82.0 40 0.00087 33.0 13.4 157 91-280 14-190 (335)
77 cd01965 Nitrogenase_MoFe_beta_ 81.6 6.6 0.00014 38.6 8.0 82 70-160 295-381 (428)
78 cd01974 Nitrogenase_MoFe_beta 81.5 10 0.00022 37.5 9.3 82 69-159 298-386 (435)
79 TIGR01470 cysG_Nterm siroheme 79.9 8.4 0.00018 34.7 7.5 129 72-223 7-142 (205)
80 PRK01390 murD UDP-N-acetylmura 79.9 7.7 0.00017 38.0 7.8 73 69-161 4-76 (460)
81 PF00070 Pyr_redox: Pyridine n 79.7 8.8 0.00019 28.6 6.4 58 88-145 6-66 (80)
82 PRK13512 coenzyme A disulfide 79.5 4.5 9.8E-05 39.5 6.1 80 74-160 148-239 (438)
83 cd01968 Nitrogenase_NifE_I Nit 79.1 17 0.00037 35.5 9.9 106 69-193 282-390 (410)
84 PF03853 YjeF_N: YjeF-related 78.8 6.5 0.00014 34.1 6.2 80 74-156 25-105 (169)
85 PF13241 NAD_binding_7: Putati 78.3 9.6 0.00021 30.3 6.6 64 72-158 5-68 (103)
86 COG2022 ThiG Uncharacterized e 78.1 8.9 0.00019 36.9 7.3 85 77-161 103-215 (262)
87 PF09314 DUF1972: Domain of un 77.5 16 0.00035 33.1 8.5 129 75-222 2-173 (185)
88 PRK06988 putative formyltransf 77.1 15 0.00033 35.1 8.7 76 75-157 3-84 (312)
89 PRK15490 Vi polysaccharide bio 76.8 68 0.0015 34.2 13.9 65 68-137 157-234 (578)
90 PRK10416 signal recognition pa 76.6 22 0.00048 34.3 9.7 87 73-163 113-209 (318)
91 PRK14478 nitrogenase molybdenu 76.3 11 0.00024 38.1 7.8 81 69-159 319-402 (475)
92 PRK05562 precorrin-2 dehydroge 76.1 11 0.00025 34.9 7.4 128 73-223 24-158 (223)
93 PRK06718 precorrin-2 dehydroge 75.5 15 0.00032 33.0 7.7 71 72-159 8-79 (202)
94 TIGR01286 nifK nitrogenase mol 75.4 33 0.00071 35.5 11.1 111 70-193 359-478 (515)
95 PRK04308 murD UDP-N-acetylmura 74.3 19 0.00042 35.1 8.8 86 72-173 3-92 (445)
96 PRK06719 precorrin-2 dehydroge 74.3 14 0.00031 31.8 7.1 67 72-158 11-78 (157)
97 PRK03369 murD UDP-N-acetylmura 73.5 18 0.0004 36.3 8.6 87 69-173 7-95 (488)
98 COG0771 MurD UDP-N-acetylmuram 73.4 19 0.00042 36.8 8.8 89 70-173 4-94 (448)
99 TIGR03499 FlhF flagellar biosy 73.2 34 0.00074 32.1 9.8 90 66-159 185-281 (282)
100 KOG0780 Signal recognition par 72.5 17 0.00038 37.5 8.1 118 67-188 92-224 (483)
101 cd03466 Nitrogenase_NifN_2 Nit 72.3 23 0.0005 35.1 8.9 80 71-159 297-381 (429)
102 PF00185 OTCace: Aspartate/orn 71.3 17 0.00037 31.4 6.9 80 73-160 1-83 (158)
103 PRK14477 bifunctional nitrogen 71.1 24 0.00051 38.9 9.4 106 69-193 315-423 (917)
104 TIGR01081 mpl UDP-N-acetylmura 70.9 18 0.00038 35.6 7.7 73 92-173 11-85 (448)
105 PLN02949 transferase, transfer 70.7 27 0.00059 35.1 9.1 40 76-115 35-77 (463)
106 COG3914 Spy Predicted O-linked 70.7 44 0.00095 35.9 10.8 173 73-278 258-438 (620)
107 TIGR00064 ftsY signal recognit 69.8 37 0.0008 31.9 9.2 85 74-162 72-166 (272)
108 TIGR02374 nitri_red_nirB nitri 68.7 11 0.00024 40.2 6.2 82 73-161 139-237 (785)
109 PRK13608 diacylglycerol glucos 68.6 1.1E+02 0.0025 29.3 13.2 175 74-271 5-203 (391)
110 PRK02910 light-independent pro 68.1 26 0.00057 35.8 8.5 79 70-159 289-371 (519)
111 PRK10785 maltodextrin glucosid 67.7 72 0.0016 33.3 11.7 124 93-229 181-336 (598)
112 TIGR03590 PseG pseudaminic aci 67.7 38 0.00083 31.3 8.8 82 93-187 20-112 (279)
113 PF13344 Hydrolase_6: Haloacid 67.6 14 0.00031 29.5 5.3 57 94-167 20-76 (101)
114 TIGR03385 CoA_CoA_reduc CoA-di 67.5 22 0.00047 34.3 7.4 88 73-167 136-240 (427)
115 smart00851 MGS MGS-like domain 66.9 17 0.00036 28.1 5.3 55 93-159 2-64 (90)
116 PRK04690 murD UDP-N-acetylmura 66.6 31 0.00068 34.5 8.5 87 72-173 6-94 (468)
117 PRK04965 NADH:flavorubredoxin 66.1 18 0.00039 34.3 6.5 82 73-161 140-238 (377)
118 PRK06731 flhF flagellar biosyn 65.9 58 0.0013 30.9 9.8 86 73-162 74-166 (270)
119 COG0461 PyrE Orotate phosphori 65.5 22 0.00048 32.8 6.7 58 71-139 109-169 (201)
120 PRK09564 coenzyme A disulfide 65.1 24 0.00053 34.0 7.2 88 73-167 148-253 (444)
121 PF01380 SIS: SIS domain SIS d 64.6 32 0.00069 26.9 6.7 44 68-115 47-91 (131)
122 TIGR01285 nifN nitrogenase mol 64.1 25 0.00055 35.1 7.3 103 70-193 307-414 (432)
123 PRK06114 short chain dehydroge 64.0 53 0.0011 28.9 8.6 80 72-161 6-97 (254)
124 PRK13811 orotate phosphoribosy 63.7 27 0.0006 30.5 6.7 59 71-139 101-161 (170)
125 PRK05579 bifunctional phosphop 63.2 21 0.00046 35.6 6.6 79 71-156 3-88 (399)
126 KOG1336 Monodehydroascorbate/f 62.6 17 0.00036 37.8 5.8 73 88-160 220-311 (478)
127 cd03786 GT1_UDP-GlcNAc_2-Epime 62.2 1.3E+02 0.0028 27.6 14.0 65 206-280 145-209 (363)
128 PRK14974 cell division protein 61.9 64 0.0014 31.7 9.5 85 74-162 140-234 (336)
129 PRK05749 3-deoxy-D-manno-octul 61.9 1.2E+02 0.0026 29.0 11.2 126 80-220 54-196 (425)
130 PRK09754 phenylpropionate diox 61.2 36 0.00078 32.7 7.6 81 73-160 143-239 (396)
131 PRK00771 signal recognition pa 60.9 67 0.0014 32.7 9.7 86 74-163 95-188 (437)
132 cd00316 Oxidoreductase_nitroge 60.6 42 0.00091 31.9 7.9 82 69-160 274-358 (399)
133 PRK00455 pyrE orotate phosphor 60.5 36 0.00078 30.2 7.0 58 71-139 110-170 (202)
134 PF02142 MGS: MGS-like domain 59.9 28 0.00061 27.2 5.5 55 93-159 2-69 (95)
135 PF01488 Shikimate_DH: Shikima 59.6 73 0.0016 26.4 8.3 79 72-163 10-88 (135)
136 PF09861 DUF2088: Domain of un 59.2 61 0.0013 29.6 8.3 39 73-111 53-95 (204)
137 PRK10637 cysG siroheme synthas 59.0 40 0.00086 33.9 7.7 71 72-158 10-80 (457)
138 TIGR03568 NeuC_NnaA UDP-N-acet 58.4 1.8E+02 0.0039 28.1 13.0 158 91-278 14-210 (365)
139 PRK04155 chaperone protein Hch 58.3 96 0.0021 29.8 9.8 49 68-116 43-102 (287)
140 PF02441 Flavoprotein: Flavopr 58.0 66 0.0014 26.4 7.7 65 85-156 8-79 (129)
141 PRK08010 pyridine nucleotide-d 58.0 45 0.00098 32.4 7.7 59 74-139 158-219 (441)
142 PRK05703 flhF flagellar biosyn 57.8 83 0.0018 31.6 9.7 87 71-161 218-310 (424)
143 PRK12726 flagellar biosynthesi 57.5 89 0.0019 32.0 9.9 97 69-169 201-308 (407)
144 TIGR01090 apt adenine phosphor 57.3 20 0.00044 30.9 4.7 34 72-108 107-140 (169)
145 PRK00745 4-oxalocrotonate taut 57.2 33 0.00071 24.5 5.1 39 238-282 11-49 (62)
146 PRK01964 4-oxalocrotonate taut 56.9 28 0.00061 25.2 4.8 33 238-275 11-43 (64)
147 cd01981 Pchlide_reductase_B Pc 56.9 53 0.0012 32.3 8.1 77 70-159 297-379 (430)
148 PF00156 Pribosyltran: Phospho 56.8 22 0.00047 27.9 4.4 42 67-111 81-122 (125)
149 PRK06116 glutathione reductase 56.3 46 0.00099 32.5 7.5 59 74-139 167-228 (450)
150 TIGR00521 coaBC_dfp phosphopan 56.2 31 0.00067 34.4 6.4 76 72-156 1-84 (390)
151 PRK07199 phosphoribosylpyropho 56.1 32 0.00069 33.0 6.2 42 71-115 208-249 (301)
152 TIGR01278 DPOR_BchB light-inde 56.1 41 0.00088 34.4 7.3 79 70-159 291-373 (511)
153 PRK09739 hypothetical protein; 56.1 86 0.0019 27.5 8.5 88 72-160 1-89 (199)
154 PRK05976 dihydrolipoamide dehy 56.0 47 0.001 32.7 7.6 59 74-139 180-241 (472)
155 COG2129 Predicted phosphoester 55.7 59 0.0013 30.8 7.8 40 76-115 32-75 (226)
156 PRK05557 fabG 3-ketoacyl-(acyl 55.6 75 0.0016 26.9 7.9 36 72-113 3-38 (248)
157 PF02254 TrkA_N: TrkA-N domain 55.4 76 0.0016 24.6 7.3 59 91-158 8-70 (116)
158 PF03358 FMN_red: NADPH-depend 55.4 1E+02 0.0022 25.1 8.4 79 76-161 2-81 (152)
159 PF05221 AdoHcyase: S-adenosyl 55.2 29 0.00063 33.6 5.8 78 72-159 41-130 (268)
160 TIGR01082 murC UDP-N-acetylmur 55.1 54 0.0012 32.2 7.8 69 94-173 12-83 (448)
161 PRK07251 pyridine nucleotide-d 54.9 52 0.0011 32.0 7.6 80 74-160 157-251 (438)
162 PRK05249 soluble pyridine nucl 54.9 52 0.0011 32.1 7.6 59 74-139 175-236 (461)
163 PRK02255 putrescine carbamoylt 54.9 75 0.0016 31.2 8.7 77 72-158 152-230 (338)
164 PRK00652 lpxK tetraacyldisacch 54.5 2E+02 0.0044 28.1 11.5 83 77-159 51-151 (325)
165 PRK07313 phosphopantothenoylcy 54.4 30 0.00065 30.8 5.4 62 90-156 14-83 (182)
166 PF03033 Glyco_transf_28: Glyc 54.3 33 0.00071 27.2 5.2 37 92-138 14-50 (139)
167 TIGR00201 comF comF family pro 54.1 20 0.00044 31.4 4.3 36 71-109 149-184 (190)
168 PRK13810 orotate phosphoribosy 54.1 52 0.0011 29.5 6.9 59 71-139 119-179 (187)
169 PRK06370 mercuric reductase; V 53.7 55 0.0012 32.1 7.6 59 74-139 171-232 (463)
170 PRK14476 nitrogenase molybdenu 53.7 60 0.0013 32.8 8.0 103 70-193 307-412 (455)
171 PRK10262 thioredoxin reductase 53.5 40 0.00087 31.1 6.3 61 72-139 144-205 (321)
172 PRK10867 signal recognition pa 53.3 1.1E+02 0.0023 31.2 9.7 82 76-161 102-194 (433)
173 PRK00005 fmt methionyl-tRNA fo 53.2 59 0.0013 30.9 7.5 70 88-157 7-85 (309)
174 TIGR00460 fmt methionyl-tRNA f 53.1 54 0.0012 31.3 7.2 71 88-158 7-86 (313)
175 cd01967 Nitrogenase_MoFe_alpha 53.1 84 0.0018 30.4 8.6 104 70-192 282-388 (406)
176 COG0003 ArsA Predicted ATPase 52.8 12 0.00027 36.4 3.0 187 73-274 29-244 (322)
177 PRK12829 short chain dehydroge 52.7 75 0.0016 27.6 7.5 37 70-112 7-43 (264)
178 PRK07845 flavoprotein disulfid 52.7 56 0.0012 32.4 7.5 58 75-139 178-238 (466)
179 COG0552 FtsY Signal recognitio 52.5 68 0.0015 32.1 8.0 75 77-159 142-230 (340)
180 cd05014 SIS_Kpsf KpsF-like pro 52.1 47 0.001 26.3 5.7 39 73-115 47-85 (128)
181 PLN00016 RNA-binding protein; 51.8 93 0.002 29.6 8.6 82 74-158 52-138 (378)
182 PLN02507 glutathione reductase 51.7 60 0.0013 32.8 7.6 80 74-160 203-298 (499)
183 TIGR00521 coaBC_dfp phosphopan 51.6 37 0.0008 33.9 6.1 59 92-162 213-277 (390)
184 PTZ00058 glutathione reductase 51.1 55 0.0012 34.0 7.4 59 74-139 237-298 (561)
185 PRK02220 4-oxalocrotonate taut 51.0 49 0.0011 23.5 5.1 38 238-281 11-48 (61)
186 PRK12827 short chain dehydroge 51.0 1.5E+02 0.0033 25.3 9.1 83 72-161 4-98 (249)
187 TIGR01284 alt_nitrog_alph nitr 51.0 60 0.0013 32.7 7.5 102 70-193 321-429 (457)
188 PRK13982 bifunctional SbtC-lik 50.9 63 0.0014 33.4 7.7 78 72-156 68-152 (475)
189 cd05017 SIS_PGI_PMI_1 The memb 50.7 72 0.0016 25.6 6.6 46 84-138 50-95 (119)
190 cd01972 Nitrogenase_VnfE_like 50.6 1.3E+02 0.0028 29.8 9.6 108 69-193 288-409 (426)
191 PF14552 Tautomerase_2: Tautom 50.4 26 0.00056 27.8 3.9 34 238-276 39-72 (82)
192 COG0462 PrsA Phosphoribosylpyr 50.1 34 0.00074 33.8 5.5 47 66-115 206-252 (314)
193 cd01966 Nitrogenase_NifN_1 Nit 50.1 78 0.0017 31.5 8.0 76 69-160 295-370 (417)
194 cd01973 Nitrogenase_VFe_beta_l 49.9 87 0.0019 31.7 8.5 109 71-193 302-422 (454)
195 TIGR02053 MerA mercuric reduct 49.9 61 0.0013 31.8 7.2 59 74-139 166-227 (463)
196 cd06312 PBP1_ABC_sugar_binding 49.8 1.4E+02 0.003 26.1 8.8 38 76-113 1-39 (271)
197 TIGR00959 ffh signal recogniti 49.8 1.6E+02 0.0036 29.8 10.4 76 83-160 106-192 (428)
198 TIGR01421 gluta_reduc_1 glutat 49.7 64 0.0014 31.9 7.4 59 74-139 166-227 (450)
199 cd01980 Chlide_reductase_Y Chl 49.6 59 0.0013 32.1 7.1 65 93-159 292-359 (416)
200 PRK12939 short chain dehydroge 49.6 91 0.002 26.7 7.5 79 72-161 5-95 (250)
201 PRK06416 dihydrolipoamide dehy 49.6 72 0.0016 31.2 7.7 59 74-139 172-233 (462)
202 TIGR03568 NeuC_NnaA UDP-N-acet 49.6 1E+02 0.0023 29.7 8.7 86 74-159 201-290 (365)
203 PRK07818 dihydrolipoamide dehy 49.4 72 0.0016 31.4 7.7 59 74-139 172-233 (466)
204 PRK12770 putative glutamate sy 49.3 37 0.00081 32.0 5.5 62 72-141 170-232 (352)
205 PRK08125 bifunctional UDP-gluc 49.0 65 0.0014 33.5 7.6 69 88-156 7-81 (660)
206 TIGR03572 WbuZ glycosyl amidat 49.0 60 0.0013 29.0 6.5 78 92-169 31-117 (232)
207 TIGR01744 XPRTase xanthine pho 48.7 58 0.0013 29.3 6.3 58 72-139 115-175 (191)
208 PRK13812 orotate phosphoribosy 48.4 65 0.0014 28.5 6.5 58 71-139 104-164 (176)
209 PRK05565 fabG 3-ketoacyl-(acyl 48.1 1E+02 0.0022 26.3 7.5 79 73-161 4-94 (247)
210 PRK06057 short chain dehydroge 48.1 1.3E+02 0.0027 26.4 8.3 37 70-112 3-39 (255)
211 cd05008 SIS_GlmS_GlmD_1 SIS (S 47.8 69 0.0015 25.3 6.0 39 73-115 46-84 (126)
212 PRK06182 short chain dehydroge 47.8 96 0.0021 27.5 7.6 75 72-161 1-85 (273)
213 PRK07890 short chain dehydroge 47.6 97 0.0021 26.9 7.4 80 70-160 1-92 (258)
214 PRK06194 hypothetical protein; 47.5 1.2E+02 0.0026 26.9 8.2 79 72-161 4-94 (287)
215 PRK14694 putative mercuric red 47.4 82 0.0018 31.1 7.7 59 74-139 178-238 (468)
216 cd03409 Chelatase_Class_II Cla 47.3 1E+02 0.0022 23.4 6.7 56 77-136 2-61 (101)
217 PRK02261 methylaspartate mutas 47.2 1.7E+02 0.0038 24.8 8.7 42 72-115 1-42 (137)
218 PRK07231 fabG 3-ketoacyl-(acyl 47.2 1.1E+02 0.0024 26.2 7.7 35 72-112 3-37 (251)
219 TIGR01861 ANFD nitrogenase iro 47.1 89 0.0019 32.4 8.2 103 70-193 324-432 (513)
220 TIGR00336 pyrE orotate phospho 47.1 82 0.0018 27.4 6.9 58 71-138 105-166 (173)
221 PF01075 Glyco_transf_9: Glyco 47.1 39 0.00084 29.7 4.9 89 73-166 103-199 (247)
222 PRK06701 short chain dehydroge 46.9 1.7E+02 0.0036 26.8 9.2 38 69-112 41-78 (290)
223 PRK06327 dihydrolipoamide dehy 46.8 80 0.0017 31.3 7.6 59 74-139 183-244 (475)
224 TIGR03169 Nterm_to_SelD pyridi 46.7 66 0.0014 30.1 6.7 81 74-162 145-243 (364)
225 PF02558 ApbA: Ketopantoate re 46.6 14 0.0003 30.2 1.9 58 92-159 9-76 (151)
226 PF05368 NmrA: NmrA-like famil 46.5 60 0.0013 28.3 6.0 73 94-173 12-95 (233)
227 PRK14805 ornithine carbamoyltr 46.3 1.2E+02 0.0026 29.2 8.5 80 71-159 144-223 (302)
228 TIGR01292 TRX_reduct thioredox 46.3 78 0.0017 28.0 6.7 58 72-139 139-197 (300)
229 PRK07806 short chain dehydroge 46.2 1.4E+02 0.0031 25.7 8.2 35 72-112 4-38 (248)
230 PRK12742 oxidoreductase; Provi 46.2 1.3E+02 0.0029 25.7 8.0 35 72-112 4-38 (237)
231 COG1647 Esterase/lipase [Gener 45.8 1.5E+02 0.0032 28.6 8.7 101 65-174 5-107 (243)
232 PRK11889 flhF flagellar biosyn 45.8 1.6E+02 0.0035 30.5 9.6 84 74-161 241-331 (436)
233 TIGR02931 anfK_nitrog Fe-only 45.7 1.5E+02 0.0033 30.0 9.4 85 71-166 309-402 (461)
234 cd00401 AdoHcyase S-adenosyl-L 45.6 59 0.0013 32.9 6.5 77 72-158 34-121 (413)
235 PRK12429 3-hydroxybutyrate deh 45.5 1.5E+02 0.0033 25.5 8.3 78 72-160 2-91 (258)
236 TIGR01350 lipoamide_DH dihydro 45.3 87 0.0019 30.5 7.5 59 74-139 170-231 (461)
237 TIGR01087 murD UDP-N-acetylmur 45.3 1.2E+02 0.0025 29.6 8.3 71 95-173 13-87 (433)
238 cd00115 LMWPc Substituted upda 44.9 88 0.0019 25.8 6.5 100 75-183 1-105 (141)
239 cd00851 MTH1175 This uncharact 44.8 41 0.0009 25.7 4.2 40 94-141 53-92 (103)
240 PRK09186 flagellin modificatio 44.6 92 0.002 27.0 6.8 36 71-112 1-36 (256)
241 PRK08063 enoyl-(acyl carrier p 44.6 1.1E+02 0.0024 26.3 7.3 79 72-160 2-92 (250)
242 PRK06463 fabG 3-ketoacyl-(acyl 44.6 1.7E+02 0.0036 25.6 8.5 75 72-160 5-89 (255)
243 PRK03515 ornithine carbamoyltr 44.3 1.3E+02 0.0027 29.7 8.4 83 72-161 154-236 (336)
244 PRK05653 fabG 3-ketoacyl-(acyl 44.3 1.3E+02 0.0029 25.4 7.7 78 72-160 3-92 (246)
245 TIGR01425 SRP54_euk signal rec 44.3 1.2E+02 0.0026 31.0 8.5 109 75-188 101-223 (429)
246 TIGR00936 ahcY adenosylhomocys 44.1 70 0.0015 32.3 6.8 77 72-158 30-114 (406)
247 PF00919 UPF0004: Uncharacteri 44.1 23 0.00049 28.7 2.8 29 124-160 18-46 (98)
248 PRK13748 putative mercuric red 44.1 87 0.0019 31.4 7.4 59 74-139 270-330 (561)
249 PRK14573 bifunctional D-alanyl 43.9 81 0.0018 33.8 7.6 84 72-173 2-88 (809)
250 cd01977 Nitrogenase_VFe_alpha 43.7 81 0.0017 31.1 7.0 79 70-160 284-368 (415)
251 PRK12560 adenine phosphoribosy 43.7 84 0.0018 28.0 6.6 59 71-138 111-172 (187)
252 PRK14727 putative mercuric red 43.7 90 0.0019 31.1 7.4 59 74-139 188-248 (479)
253 TIGR01134 purF amidophosphorib 43.5 1.1E+02 0.0025 30.8 8.1 79 72-159 336-418 (442)
254 PRK00934 ribose-phosphate pyro 43.5 69 0.0015 30.3 6.3 41 72-115 202-242 (285)
255 PRK05647 purN phosphoribosylgl 43.2 1.7E+02 0.0037 26.4 8.5 70 75-156 3-86 (200)
256 PRK03803 murD UDP-N-acetylmura 43.1 1.2E+02 0.0026 29.7 8.1 71 94-173 19-93 (448)
257 COG0773 MurC UDP-N-acetylmuram 43.1 51 0.0011 34.2 5.7 59 92-161 19-77 (459)
258 PF13580 SIS_2: SIS domain; PD 43.0 58 0.0013 27.1 5.1 77 210-287 46-123 (138)
259 TIGR01316 gltA glutamate synth 43.0 1.8E+02 0.0038 28.9 9.3 82 72-160 131-228 (449)
260 PRK13809 orotate phosphoribosy 42.8 92 0.002 28.5 6.8 59 71-139 115-175 (206)
261 PF14572 Pribosyl_synth: Phosp 42.2 45 0.00097 30.6 4.6 46 68-116 77-122 (184)
262 PRK14098 glycogen synthase; Pr 42.1 90 0.002 31.5 7.2 37 75-111 6-46 (489)
263 PRK07478 short chain dehydroge 42.1 1.6E+02 0.0035 25.6 8.0 79 72-161 4-94 (254)
264 COG0223 Fmt Methionyl-tRNA for 42.1 95 0.0021 30.5 7.1 77 88-166 8-93 (307)
265 TIGR01424 gluta_reduc_2 glutat 41.9 1.1E+02 0.0023 30.1 7.6 80 74-160 166-261 (446)
266 cd01423 MGS_CPS_I_III Methylgl 41.9 85 0.0018 25.2 5.8 54 92-157 14-78 (116)
267 PRK01021 lpxB lipid-A-disaccha 41.8 2.1E+02 0.0045 30.8 10.0 169 76-288 228-431 (608)
268 PRK04284 ornithine carbamoyltr 41.7 1.6E+02 0.0035 28.8 8.7 82 72-160 153-234 (332)
269 cd04732 HisA HisA. Phosphorib 41.5 89 0.0019 27.6 6.4 80 87-169 28-116 (234)
270 PLN02546 glutathione reductase 41.4 96 0.0021 32.2 7.4 60 73-139 251-313 (558)
271 TIGR02932 vnfK_nitrog V-contai 41.4 2.7E+02 0.0059 28.3 10.5 108 71-193 306-425 (457)
272 COG4175 ProV ABC-type proline/ 41.4 6.1 0.00013 39.8 -1.1 24 72-95 213-239 (386)
273 PRK05866 short chain dehydroge 41.3 1.9E+02 0.004 26.6 8.6 37 71-113 37-73 (293)
274 cd06302 PBP1_LsrB_Quorum_Sensi 41.2 1.9E+02 0.004 26.2 8.5 32 148-184 54-88 (298)
275 PTZ00052 thioredoxin reductase 41.1 1E+02 0.0022 31.2 7.4 52 88-139 189-242 (499)
276 CHL00162 thiG thiamin biosynth 41.0 1E+02 0.0022 30.1 6.9 85 77-161 110-222 (267)
277 PRK02269 ribose-phosphate pyro 40.9 71 0.0015 30.9 6.0 43 71-116 214-256 (320)
278 TIGR01282 nifD nitrogenase mol 40.7 1E+02 0.0022 31.3 7.3 84 69-166 330-418 (466)
279 PRK14989 nitrite reductase sub 40.5 54 0.0012 35.9 5.7 82 73-161 144-244 (847)
280 TIGR00682 lpxK tetraacyldisacc 40.5 1.3E+02 0.0028 29.2 7.8 84 77-160 30-131 (311)
281 PF02579 Nitro_FeMo-Co: Dinitr 40.4 41 0.00088 25.3 3.5 37 95-139 44-80 (94)
282 cd04728 ThiG Thiazole synthase 40.4 1.4E+02 0.003 28.8 7.7 86 77-162 96-209 (248)
283 PRK13394 3-hydroxybutyrate deh 40.3 2E+02 0.0043 24.9 8.2 78 72-160 5-94 (262)
284 TIGR00658 orni_carb_tr ornithi 40.3 1.9E+02 0.0041 27.8 8.8 79 72-158 146-224 (304)
285 cd00532 MGS-like MGS-like doma 39.9 94 0.002 25.1 5.8 66 77-158 2-76 (112)
286 cd06350 PBP1_GPCR_family_C_lik 39.9 2.7E+02 0.0058 25.3 9.3 90 94-187 149-252 (348)
287 PRK12748 3-ketoacyl-(acyl-carr 39.8 2.2E+02 0.0047 24.9 8.5 37 72-112 3-39 (256)
288 cd04731 HisF The cyclase subun 39.8 94 0.002 27.9 6.3 78 92-169 28-114 (243)
289 PRK06292 dihydrolipoamide dehy 39.8 98 0.0021 30.2 6.9 58 74-139 169-229 (460)
290 PRK14804 ornithine carbamoyltr 39.7 1.6E+02 0.0036 28.4 8.3 78 72-161 151-229 (311)
291 PF09848 DUF2075: Uncharacteri 39.5 1.4E+02 0.0029 28.7 7.7 39 75-114 1-41 (352)
292 PRK07200 aspartate/ornithine c 39.3 2.2E+02 0.0049 28.7 9.4 88 72-161 185-273 (395)
293 TIGR01832 kduD 2-deoxy-D-gluco 39.3 1.7E+02 0.0036 25.3 7.6 76 72-160 3-90 (248)
294 PRK08525 amidophosphoribosyltr 39.3 69 0.0015 32.5 5.9 83 70-159 336-420 (445)
295 PRK06115 dihydrolipoamide dehy 39.2 1.3E+02 0.0028 29.9 7.7 59 74-139 174-235 (466)
296 cd00491 4Oxalocrotonate_Tautom 39.2 78 0.0017 22.0 4.6 33 238-275 10-42 (58)
297 PRK09162 hypoxanthine-guanine 39.0 56 0.0012 28.7 4.7 38 71-111 94-132 (181)
298 PRK07097 gluconate 5-dehydroge 39.0 1.6E+02 0.0035 26.0 7.6 79 72-161 8-98 (265)
299 PRK09219 xanthine phosphoribos 38.7 1.1E+02 0.0023 27.7 6.4 59 72-139 115-175 (189)
300 PRK08416 7-alpha-hydroxysteroi 38.4 1E+02 0.0022 27.3 6.2 39 69-113 3-41 (260)
301 PRK12744 short chain dehydroge 38.4 2.7E+02 0.0059 24.3 9.2 82 72-160 6-99 (257)
302 CHL00076 chlB photochlorophyll 38.4 1.5E+02 0.0033 30.5 8.3 83 70-166 301-388 (513)
303 PRK07666 fabG 3-ketoacyl-(acyl 38.4 1.3E+02 0.0027 26.0 6.7 35 72-112 5-39 (239)
304 PRK12723 flagellar biosynthesi 38.3 1.8E+02 0.0038 29.2 8.5 85 73-161 173-265 (388)
305 PRK04923 ribose-phosphate pyro 38.2 89 0.0019 30.4 6.3 43 71-116 214-256 (319)
306 PRK07424 bifunctional sterol d 38.1 1.7E+02 0.0036 29.4 8.3 75 72-160 176-255 (406)
307 PRK12828 short chain dehydroge 38.0 1.5E+02 0.0033 25.0 7.0 78 72-160 5-92 (239)
308 cd01976 Nitrogenase_MoFe_alpha 37.9 1E+02 0.0022 30.7 6.7 79 69-159 295-378 (421)
309 PRK13530 arsenate reductase; P 37.6 60 0.0013 27.2 4.5 79 72-158 1-82 (133)
310 PRK08278 short chain dehydroge 37.6 3E+02 0.0065 24.7 9.2 82 72-160 4-100 (273)
311 cd01422 MGS Methylglyoxal synt 37.5 1.3E+02 0.0029 24.7 6.4 67 76-159 1-78 (115)
312 PRK06031 phosphoribosyltransfe 37.3 66 0.0014 30.0 5.0 36 70-108 150-185 (233)
313 PRK08213 gluconate 5-dehydroge 37.3 1.9E+02 0.0042 25.2 7.8 79 71-160 9-99 (259)
314 PTZ00318 NADH dehydrogenase-li 37.2 99 0.0022 30.2 6.5 79 75-160 174-278 (424)
315 PRK09134 short chain dehydroge 37.2 2.3E+02 0.0049 24.9 8.2 65 92-160 21-97 (258)
316 PRK00779 ornithine carbamoyltr 37.2 1.9E+02 0.0041 27.9 8.2 78 71-159 149-226 (304)
317 cd03784 GT1_Gtf_like This fami 37.1 1E+02 0.0022 29.0 6.3 36 76-113 2-37 (401)
318 PF02606 LpxK: Tetraacyldisacc 37.1 1.4E+02 0.0031 29.0 7.5 85 77-161 37-139 (326)
319 PF07905 PucR: Purine cataboli 37.0 2E+02 0.0042 23.6 7.3 79 64-144 32-110 (123)
320 TIGR01862 N2-ase-Ialpha nitrog 37.0 1.6E+02 0.0034 29.6 7.9 80 69-160 312-397 (443)
321 COG4126 Hydantoin racemase [Am 36.9 55 0.0012 31.2 4.4 43 90-139 160-203 (230)
322 PRK05500 bifunctional orotidin 36.9 1.1E+02 0.0023 31.8 6.9 59 70-139 389-450 (477)
323 TIGR00013 taut 4-oxalocrotonat 36.9 86 0.0019 22.3 4.6 33 238-275 11-43 (63)
324 PRK12743 oxidoreductase; Provi 36.7 1.8E+02 0.004 25.5 7.5 77 74-160 2-90 (256)
325 PRK13886 conjugal transfer pro 36.5 2.5E+02 0.0054 26.5 8.7 111 76-193 3-130 (241)
326 PRK10886 DnaA initiator-associ 36.4 91 0.002 28.2 5.7 39 73-115 109-147 (196)
327 PRK06912 acoL dihydrolipoamide 36.3 1.4E+02 0.0029 29.5 7.3 58 75-139 171-231 (458)
328 PRK07322 adenine phosphoribosy 36.1 72 0.0016 28.0 4.9 33 72-107 118-150 (178)
329 PRK02102 ornithine carbamoyltr 35.8 2.4E+02 0.0053 27.7 8.9 82 71-159 152-233 (331)
330 PRK09814 beta-1,6-galactofuran 35.7 3.7E+02 0.0081 25.1 11.0 110 86-220 14-141 (333)
331 PRK12938 acetyacetyl-CoA reduc 35.7 2.1E+02 0.0045 24.7 7.6 80 72-161 1-92 (246)
332 PRK12562 ornithine carbamoyltr 35.7 2.5E+02 0.0054 27.7 8.9 83 72-161 154-236 (334)
333 PRK09620 hypothetical protein; 35.7 39 0.00085 31.1 3.3 20 94-113 33-52 (229)
334 PRK08305 spoVFB dipicolinate s 35.6 47 0.001 30.5 3.7 39 72-115 3-44 (196)
335 cd05013 SIS_RpiR RpiR-like pro 35.6 65 0.0014 25.0 4.1 38 74-115 61-98 (139)
336 PRK12935 acetoacetyl-CoA reduc 35.5 1.6E+02 0.0036 25.3 7.0 79 72-160 4-94 (247)
337 PRK07060 short chain dehydroge 35.4 2.6E+02 0.0057 23.9 8.1 34 72-111 7-40 (245)
338 PRK02277 orotate phosphoribosy 35.4 72 0.0016 28.6 4.9 35 71-108 137-171 (200)
339 TIGR03316 ygeW probable carbam 35.4 2.9E+02 0.0063 27.5 9.4 86 72-160 168-255 (357)
340 cd00562 NifX_NifB This CD repr 35.4 79 0.0017 24.0 4.5 39 95-141 52-90 (102)
341 PRK05476 S-adenosyl-L-homocyst 35.3 88 0.0019 31.8 5.9 83 72-164 46-137 (425)
342 PF02635 DrsE: DsrE/DsrF-like 35.3 2E+02 0.0044 21.9 6.8 65 75-139 1-81 (122)
343 PRK07831 short chain dehydroge 35.2 2.3E+02 0.0051 24.8 8.0 41 66-111 9-49 (262)
344 PRK13566 anthranilate synthase 35.2 1.1E+02 0.0023 33.2 6.9 34 73-112 525-558 (720)
345 PRK01906 tetraacyldisaccharide 35.2 1.9E+02 0.0042 28.4 8.1 83 77-159 58-158 (338)
346 PF02684 LpxB: Lipid-A-disacch 35.2 3.6E+02 0.0077 27.0 10.0 161 90-294 11-208 (373)
347 PRK06172 short chain dehydroge 34.9 2.4E+02 0.0052 24.5 7.9 79 72-161 5-95 (253)
348 COG1648 CysG Siroheme synthase 34.8 1.8E+02 0.004 26.7 7.4 82 72-169 10-94 (210)
349 cd01424 MGS_CPS_II Methylglyox 34.6 1.1E+02 0.0024 24.2 5.4 66 77-158 3-75 (110)
350 PF02844 GARS_N: Phosphoribosy 34.6 53 0.0011 27.3 3.5 41 93-138 51-91 (100)
351 PRK06027 purU formyltetrahydro 34.6 2.1E+02 0.0045 27.3 8.0 69 75-157 91-172 (286)
352 PRK07814 short chain dehydroge 34.4 2.1E+02 0.0046 25.3 7.6 78 72-160 8-97 (263)
353 TIGR01316 gltA glutamate synth 34.4 99 0.0021 30.6 6.0 62 72-141 270-331 (449)
354 TIGR01125 MiaB-like tRNA modif 34.4 59 0.0013 32.1 4.5 27 124-158 18-44 (430)
355 PF01936 NYN: NYN domain; Int 34.4 45 0.00097 26.7 3.1 13 124-136 110-122 (146)
356 TIGR01438 TGR thioredoxin and 34.3 1.3E+02 0.0029 30.2 7.0 52 88-139 187-240 (484)
357 cd06316 PBP1_ABC_sugar_binding 34.3 2.9E+02 0.0063 24.6 8.5 35 77-111 2-36 (294)
358 PRK01713 ornithine carbamoyltr 34.1 2.3E+02 0.0049 27.8 8.3 81 72-159 154-234 (334)
359 PRK00208 thiG thiazole synthas 34.0 2E+02 0.0044 27.7 7.8 86 77-162 96-209 (250)
360 cd01971 Nitrogenase_VnfN_like 33.9 2.3E+02 0.0049 28.2 8.4 80 73-160 292-381 (427)
361 TIGR01860 VNFD nitrogenase van 33.8 2.9E+02 0.0062 28.0 9.3 102 70-193 323-431 (461)
362 PRK12809 putative oxidoreducta 33.7 2.4E+02 0.0052 29.5 8.9 81 73-160 309-405 (639)
363 PRK07523 gluconate 5-dehydroge 33.5 2.3E+02 0.0049 24.7 7.6 78 72-160 8-97 (255)
364 PF13844 Glyco_transf_41: Glyc 33.3 26 0.00056 36.2 1.8 26 260-285 275-303 (468)
365 PF01008 IF-2B: Initiation fac 33.2 2.4E+02 0.0053 25.9 8.1 62 67-137 100-162 (282)
366 PRK08862 short chain dehydroge 33.2 2.4E+02 0.0053 24.9 7.8 77 72-159 3-92 (227)
367 PRK08628 short chain dehydroge 33.2 2.4E+02 0.0053 24.5 7.7 77 72-160 5-93 (258)
368 PRK02289 4-oxalocrotonate taut 33.2 1.1E+02 0.0023 22.2 4.7 38 238-281 11-48 (60)
369 cd03820 GT1_amsD_like This fam 33.1 3.1E+02 0.0067 23.4 10.8 99 74-183 178-282 (348)
370 PRK12826 3-ketoacyl-(acyl-carr 33.0 2.5E+02 0.0055 23.9 7.7 78 72-160 4-93 (251)
371 PRK09526 lacI lac repressor; R 32.9 3.8E+02 0.0082 24.3 9.7 40 73-112 62-101 (342)
372 KOG4584 Uncharacterized conser 32.9 1.4E+02 0.0031 30.0 6.7 55 76-131 200-254 (348)
373 PF02878 PGM_PMM_I: Phosphoglu 32.9 82 0.0018 26.0 4.5 36 75-111 40-75 (137)
374 PF03807 F420_oxidored: NADP o 32.8 1E+02 0.0022 23.2 4.7 56 92-158 10-69 (96)
375 PTZ00075 Adenosylhomocysteinas 32.8 1.1E+02 0.0024 31.8 6.3 84 72-165 43-139 (476)
376 PLN02891 IMP cyclohydrolase 32.8 94 0.002 33.0 5.8 48 75-139 22-69 (547)
377 PRK03806 murD UDP-N-acetylmura 32.6 2.5E+02 0.0054 27.4 8.4 83 73-172 5-89 (438)
378 PRK06198 short chain dehydroge 32.5 2.3E+02 0.005 24.6 7.4 80 71-160 3-94 (260)
379 TIGR01251 ribP_PPkin ribose-ph 32.4 1.1E+02 0.0024 29.3 5.8 43 70-115 206-248 (308)
380 cd05126 Mth938 Mth938 domain. 32.0 2.1E+02 0.0045 24.0 6.8 74 87-185 42-116 (117)
381 PRK11595 DNA utilization prote 31.9 74 0.0016 28.9 4.4 34 72-108 185-218 (227)
382 PRK11303 DNA-binding transcrip 31.9 3.9E+02 0.0084 24.1 9.6 40 73-112 60-99 (328)
383 COG0541 Ffh Signal recognition 31.9 53 0.0012 34.0 3.8 81 77-161 103-193 (451)
384 PRK10669 putative cation:proto 31.8 1.1E+02 0.0024 31.2 6.1 58 92-158 428-489 (558)
385 PLN02494 adenosylhomocysteinas 31.8 1.2E+02 0.0026 31.6 6.3 79 72-160 44-134 (477)
386 PRK12746 short chain dehydroge 31.7 2.2E+02 0.0047 24.7 7.1 36 72-113 4-39 (254)
387 PRK07035 short chain dehydroge 31.6 2.9E+02 0.0063 24.0 7.9 35 72-112 6-40 (252)
388 TIGR02026 BchE magnesium-proto 31.4 1.4E+02 0.003 30.3 6.6 24 89-112 21-45 (497)
389 PRK12747 short chain dehydroge 31.4 2.1E+02 0.0046 24.8 7.1 37 71-113 1-37 (252)
390 PRK02304 adenine phosphoribosy 31.3 1E+02 0.0023 26.6 5.0 35 71-108 111-145 (175)
391 PRK07533 enoyl-(acyl carrier p 31.1 2.4E+02 0.0052 25.0 7.5 36 69-111 5-43 (258)
392 cd05212 NAD_bind_m-THF_DH_Cycl 31.1 2E+02 0.0044 24.7 6.7 15 147-161 68-82 (140)
393 cd01521 RHOD_PspE2 Member of t 31.0 1.8E+02 0.0038 22.8 5.9 35 72-110 62-96 (110)
394 PRK05234 mgsA methylglyoxal sy 30.9 1.9E+02 0.0042 24.9 6.6 66 75-156 5-81 (142)
395 cd01421 IMPCH Inosine monophos 30.8 1.2E+02 0.0027 27.8 5.6 33 93-137 13-45 (187)
396 PLN02342 ornithine carbamoyltr 30.4 2.5E+02 0.0054 27.9 8.0 75 72-160 192-269 (348)
397 PRK00553 ribose-phosphate pyro 30.4 1.4E+02 0.0031 29.2 6.3 43 71-116 215-257 (332)
398 PF02302 PTS_IIB: PTS system, 30.4 85 0.0019 23.6 3.9 51 112-162 6-59 (90)
399 PRK14192 bifunctional 5,10-met 30.3 1.1E+02 0.0023 29.4 5.3 39 121-159 171-211 (283)
400 PRK14024 phosphoribosyl isomer 30.0 1.7E+02 0.0038 26.7 6.5 72 87-161 31-108 (241)
401 PF00205 TPP_enzyme_M: Thiamin 29.9 1.1E+02 0.0024 24.9 4.7 11 147-157 74-84 (137)
402 COG0287 TyrA Prephenate dehydr 29.9 1.4E+02 0.0031 28.4 6.1 78 74-168 3-84 (279)
403 PLN02285 methionyl-tRNA formyl 29.9 2.6E+02 0.0056 27.2 8.0 76 75-157 7-100 (334)
404 cd02037 MRP-like MRP (Multiple 29.7 2.4E+02 0.0052 23.6 6.9 34 78-111 2-35 (169)
405 PRK03092 ribose-phosphate pyro 29.6 1.7E+02 0.0037 28.1 6.6 42 71-115 198-239 (304)
406 PRK14477 bifunctional nitrogen 29.5 2.2E+02 0.0048 31.6 8.2 104 70-193 783-889 (917)
407 PRK12775 putative trifunctiona 29.5 3.2E+02 0.0069 30.7 9.5 81 73-160 429-527 (1006)
408 COG1433 Uncharacterized conser 29.5 93 0.002 26.6 4.3 39 95-141 56-94 (121)
409 cd05710 SIS_1 A subgroup of th 29.5 1.1E+02 0.0024 24.6 4.7 38 74-115 48-85 (120)
410 PRK07774 short chain dehydroge 29.3 3.7E+02 0.008 23.1 8.3 79 72-161 4-94 (250)
411 PRK12823 benD 1,6-dihydroxycyc 29.2 3.8E+02 0.0082 23.4 8.2 76 72-159 6-93 (260)
412 PF07429 Glyco_transf_56: 4-al 29.2 1.3E+02 0.0027 30.5 5.8 89 70-159 180-274 (360)
413 PRK07109 short chain dehydroge 29.2 2.7E+02 0.0059 26.3 7.8 78 72-160 6-95 (334)
414 TIGR02622 CDP_4_6_dhtase CDP-g 29.2 1.1E+02 0.0024 28.5 5.1 37 71-113 1-37 (349)
415 TIGR03572 WbuZ glycosyl amidat 29.1 2E+02 0.0044 25.6 6.7 69 91-160 153-230 (232)
416 PRK08264 short chain dehydroge 29.1 2.5E+02 0.0055 24.0 7.0 34 72-111 4-38 (238)
417 cd01065 NAD_bind_Shikimate_DH 29.1 2.3E+02 0.005 23.0 6.5 76 72-162 17-93 (155)
418 PRK13984 putative oxidoreducta 29.1 3.7E+02 0.008 27.6 9.3 83 72-161 281-379 (604)
419 cd01078 NAD_bind_H4MPT_DH NADP 29.1 1.7E+02 0.0037 25.2 6.0 79 72-161 26-108 (194)
420 PF04127 DFP: DNA / pantothena 29.0 1.6E+02 0.0034 26.4 5.9 57 94-162 33-94 (185)
421 PRK05717 oxidoreductase; Valid 28.8 4E+02 0.0086 23.3 8.3 36 70-111 6-41 (255)
422 PF13460 NAD_binding_10: NADH( 28.8 1.7E+02 0.0038 24.1 5.8 57 92-159 10-69 (183)
423 TIGR00670 asp_carb_tr aspartat 28.8 3.2E+02 0.0069 26.4 8.3 76 72-158 148-224 (301)
424 PRK13587 1-(5-phosphoribosyl)- 28.7 1.9E+02 0.0041 26.6 6.5 79 88-169 31-119 (234)
425 PF02310 B12-binding: B12 bind 28.7 1.8E+02 0.0039 22.7 5.6 32 82-113 6-37 (121)
426 PRK04523 N-acetylornithine car 28.6 3.3E+02 0.0071 26.7 8.4 84 73-161 168-255 (335)
427 PLN02256 arogenate dehydrogena 28.6 1.6E+02 0.0034 28.2 6.2 69 72-160 34-102 (304)
428 cd06346 PBP1_ABC_ligand_bindin 28.5 3.5E+02 0.0076 24.5 8.2 78 95-172 127-216 (312)
429 TIGR02195 heptsyl_trn_II lipop 28.5 1.3E+02 0.0029 27.9 5.5 80 74-160 173-261 (334)
430 TIGR00735 hisF imidazoleglycer 28.4 2E+02 0.0043 26.4 6.6 77 93-169 32-117 (254)
431 PRK13010 purU formyltetrahydro 28.4 2.6E+02 0.0056 26.9 7.6 69 75-157 95-176 (289)
432 PRK15454 ethanol dehydrogenase 28.4 2E+02 0.0044 28.4 7.1 19 148-168 104-122 (395)
433 cd03819 GT1_WavL_like This fam 28.4 4.3E+02 0.0092 23.5 9.4 81 77-158 188-271 (355)
434 TIGR01426 MGT glycosyltransfer 28.3 94 0.002 29.4 4.6 36 93-138 12-47 (392)
435 PRK12937 short chain dehydroge 28.2 2.8E+02 0.0061 23.7 7.1 78 73-160 4-93 (245)
436 PRK06841 short chain dehydroge 28.2 3.9E+02 0.0085 23.1 8.1 34 72-111 13-46 (255)
437 TIGR01133 murG undecaprenyldip 28.2 4.1E+02 0.0089 24.0 8.5 78 75-158 180-258 (348)
438 PF06283 ThuA: Trehalose utili 28.0 97 0.0021 27.4 4.4 36 76-111 1-40 (217)
439 PTZ00397 macrophage migration 27.9 1E+02 0.0022 25.0 4.1 31 240-275 70-100 (116)
440 cd06296 PBP1_CatR_like Ligand- 27.7 3.1E+02 0.0067 23.6 7.4 31 148-183 53-84 (270)
441 cd04723 HisA_HisF Phosphoribos 27.5 1.7E+02 0.0037 26.6 6.0 80 87-169 34-120 (233)
442 cd08171 GlyDH-like2 Glycerol d 27.3 1.3E+02 0.0028 28.8 5.4 84 74-160 22-112 (345)
443 COG0859 RfaF ADP-heptose:LPS h 27.2 2.4E+02 0.0052 26.8 7.1 87 75-168 175-269 (334)
444 PRK08643 acetoin reductase; Va 27.2 4.2E+02 0.009 23.0 8.3 76 74-160 2-89 (256)
445 PRK05872 short chain dehydroge 27.2 3.3E+02 0.0071 24.9 7.8 34 72-111 7-40 (296)
446 cd06315 PBP1_ABC_sugar_binding 27.1 4.4E+02 0.0096 23.3 9.1 37 76-112 2-38 (280)
447 PRK05854 short chain dehydroge 27.1 2.2E+02 0.0047 26.4 6.7 36 70-111 10-45 (313)
448 cd03115 SRP The signal recogni 27.0 3.7E+02 0.0081 22.4 7.7 76 85-162 9-94 (173)
449 TIGR00007 phosphoribosylformim 26.8 2.4E+02 0.0053 24.9 6.7 70 90-160 144-221 (230)
450 PF04244 DPRP: Deoxyribodipyri 26.8 2E+02 0.0042 26.8 6.3 46 92-137 50-95 (224)
451 PRK10422 lipopolysaccharide co 26.8 1.5E+02 0.0032 28.0 5.6 84 75-163 183-275 (352)
452 cd03789 GT1_LPS_heptosyltransf 26.8 1.6E+02 0.0035 26.5 5.7 79 75-160 121-209 (279)
453 COG0446 HcaD Uncharacterized N 26.7 1.7E+02 0.0036 26.9 5.8 75 88-162 143-237 (415)
454 TIGR03206 benzo_BadH 2-hydroxy 26.7 3.6E+02 0.0078 23.1 7.6 34 72-111 1-34 (250)
455 TIGR01675 plant-AP plant acid 26.6 83 0.0018 29.5 3.8 41 92-136 124-164 (229)
456 PF02153 PDH: Prephenate dehyd 26.6 82 0.0018 29.0 3.8 64 96-169 1-66 (258)
457 PRK05920 aromatic acid decarbo 26.5 94 0.002 28.6 4.1 40 73-115 2-41 (204)
458 PF01861 DUF43: Protein of unk 26.5 1.7E+02 0.0037 28.0 5.9 74 72-158 43-120 (243)
459 PRK00748 1-(5-phosphoribosyl)- 26.2 2.6E+02 0.0057 24.7 6.8 77 93-169 32-117 (233)
460 PRK06550 fabG 3-ketoacyl-(acyl 26.1 1.7E+02 0.0037 25.0 5.4 36 71-112 2-37 (235)
461 PRK08085 gluconate 5-dehydroge 26.0 3.8E+02 0.0083 23.3 7.7 78 72-160 7-96 (254)
462 PF10087 DUF2325: Uncharacteri 25.8 2.1E+02 0.0046 22.4 5.5 19 147-165 45-63 (97)
463 cd02042 ParA ParA and ParB of 25.7 1.3E+02 0.0029 22.8 4.3 34 78-111 2-35 (104)
464 PRK08936 glucose-1-dehydrogena 25.6 3.7E+02 0.008 23.6 7.6 79 72-160 5-95 (261)
465 PRK12481 2-deoxy-D-gluconate 3 25.6 3.6E+02 0.0077 23.8 7.5 76 72-160 6-93 (251)
466 PRK13011 formyltetrahydrofolat 25.5 3.7E+02 0.008 25.8 8.0 69 75-157 91-172 (286)
467 PRK13586 1-(5-phosphoribosyl)- 25.2 2.4E+02 0.0053 26.0 6.6 79 88-169 30-116 (232)
468 cd03786 GT1_UDP-GlcNAc_2-Epime 25.1 2.6E+02 0.0057 25.5 6.8 80 74-159 198-286 (363)
469 TIGR03140 AhpF alkyl hydropero 25.1 2.3E+02 0.0049 28.7 6.8 58 72-139 350-408 (515)
470 PLN02496 probable phosphopanto 25.0 1.5E+02 0.0033 27.6 5.2 76 74-159 19-105 (209)
471 cd05005 SIS_PHI Hexulose-6-pho 24.9 3.7E+02 0.008 23.0 7.3 80 73-156 32-125 (179)
472 PRK02705 murD UDP-N-acetylmura 24.9 3.5E+02 0.0077 26.4 8.0 83 76-169 2-89 (459)
473 COG1121 ZnuC ABC-type Mn/Zn tr 24.8 40 0.00087 32.2 1.4 14 73-86 188-201 (254)
474 PRK05479 ketol-acid reductoiso 24.8 3.8E+02 0.0081 26.5 8.1 95 68-186 11-109 (330)
475 PRK06849 hypothetical protein; 24.7 2.7E+02 0.0058 26.8 7.0 35 74-114 4-38 (389)
476 PRK07791 short chain dehydroge 24.6 5.4E+02 0.012 23.4 9.3 84 71-160 3-102 (286)
477 PF03720 UDPG_MGDP_dh_C: UDP-g 24.6 2E+02 0.0044 22.8 5.3 53 93-159 19-75 (106)
478 PRK15317 alkyl hydroperoxide r 24.5 2.4E+02 0.0051 28.5 6.9 59 71-139 348-407 (517)
479 PF00465 Fe-ADH: Iron-containi 24.5 1.6E+02 0.0035 28.2 5.5 62 76-139 23-84 (366)
480 PRK01033 imidazole glycerol ph 24.5 2.8E+02 0.006 25.7 6.8 69 92-160 31-106 (258)
481 cd06360 PBP1_alkylbenzenes_lik 24.4 3.7E+02 0.008 24.2 7.5 81 93-173 122-214 (336)
482 PRK06200 2,3-dihydroxy-2,3-dih 24.3 4.3E+02 0.0092 23.2 7.7 34 72-111 4-37 (263)
483 PRK10339 DNA-binding transcrip 24.3 2.9E+02 0.0063 25.1 6.9 19 92-110 85-103 (327)
484 TIGR01680 Veg_Stor_Prot vegeta 24.3 1.1E+02 0.0023 29.8 4.2 41 92-136 149-189 (275)
485 PRK08558 adenine phosphoribosy 24.2 2.8E+02 0.0061 25.8 6.8 35 71-108 173-207 (238)
486 PLN02828 formyltetrahydrofolat 24.2 5E+02 0.011 24.9 8.6 75 74-157 71-154 (268)
487 cd06338 PBP1_ABC_ligand_bindin 24.1 5.5E+02 0.012 23.3 9.5 85 95-183 129-228 (345)
488 PRK05579 bifunctional phosphop 24.0 2.3E+02 0.0049 28.5 6.5 58 92-161 216-278 (399)
489 PF12273 RCR: Chitin synthesis 23.9 53 0.0011 27.5 1.8 12 16-27 1-12 (130)
490 PRK04128 1-(5-phosphoribosyl)- 23.9 3.6E+02 0.0078 24.7 7.4 76 93-169 32-115 (228)
491 cd04949 GT1_gtfA_like This fam 23.9 1.8E+02 0.0038 26.7 5.4 69 149-223 98-178 (372)
492 PF01695 IstB_IS21: IstB-like 23.9 3.7E+02 0.0081 23.5 7.2 78 69-160 41-118 (178)
493 PRK10355 xylF D-xylose transpo 23.8 6.1E+02 0.013 23.8 9.1 86 73-183 24-112 (330)
494 cd02036 MinD Bacterial cell di 23.7 1.5E+02 0.0032 24.3 4.4 36 77-112 1-36 (179)
495 PRK07984 enoyl-(acyl carrier p 23.7 2.1E+02 0.0045 25.9 5.8 38 70-111 2-39 (262)
496 PLN02527 aspartate carbamoyltr 23.7 4.6E+02 0.01 25.3 8.4 77 71-158 148-226 (306)
497 PRK02458 ribose-phosphate pyro 23.7 1.6E+02 0.0034 28.7 5.2 43 71-116 215-257 (323)
498 COG4594 FecB ABC-type Fe3+-cit 23.7 7.4E+02 0.016 24.7 10.4 86 94-193 57-147 (310)
499 PRK15408 autoinducer 2-binding 23.6 4.5E+02 0.0097 25.0 8.2 35 148-187 78-115 (336)
500 PLN02293 adenine phosphoribosy 23.6 1.5E+02 0.0033 26.6 4.8 38 71-111 122-159 (187)
No 1
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.90 E-value=3.7e-25 Score=220.12 Aligned_cols=274 Identities=22% Similarity=0.101 Sum_probs=232.0
Q ss_pred CCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHhccCCCCCccccccccccc-cccCccccccCCCccccccccEEEE
Q 022363 1 MGKHSATGWWVPLTKRWILALLIMLSISTAIAFFIRAALDPCDRHLEVSDKKRV-QSQSVPRIATKSSPLSFMKSKLVLL 79 (298)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~f~~~KkILL 79 (298)
|.+.+-+.|...||++|+.|....+..+|...-+.+.++..|+...--.+.... ++.-.-+.++ ..++.+++|+-+++
T Consensus 1 ~~~~~~~~~~~~qk~~~~~m~~~~~~~~t~~~~~~~~~~~~~~~~~gg~er~~v~~~~~l~s~~~-~lg~~d~G~qV~~l 79 (495)
T KOG0853|consen 1 MTNDSSSNISELQKVLWKAMIEKSLLVSTPEKPFEHVTFIHPDLGIGGAERLVVDAAVHLLSGQD-VLGLPDTGGQVVYL 79 (495)
T ss_pred CcchhhhHHHHhhhhhhhhhhhhhcccccccccchhheeeccccccCchHHHhHHHHHHHHhccc-ccCCCCCCceEEEE
Confidence 566666889999999999999999999999999999999999873333332211 1111111333 34599999999999
Q ss_pred EeccCCCCCchHHHHHHHHHHHh-CCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhccCEEEEec
Q 022363 80 VSHELSLSGGPLLLMELAFLLRG-VGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNT 158 (298)
Q Consensus 80 ISHELS~TGAPLlLleLA~~Lkq-~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~aDLVIaNT 158 (298)
++|+.+++ +|++++.++..|.. .++.|+......+- + ..+++.+..+++.++..+....++.+.++|+||.|+
T Consensus 80 ~~h~~al~-~~~~~~~~~~~l~~~~~i~vv~~~lP~~~--~---~~~~~~~~~~~~~il~~~~~~~~k~~~~~d~~i~d~ 153 (495)
T KOG0853|consen 80 TSHEDALE-MPLLLRCFAETLDGTPPILVVGDWLPRAM--G---QFLEQVAGCAYLRILRIPFGILFKWAEKVDPIIEDF 153 (495)
T ss_pred ehhhhhhc-chHHHHHHHHHhcCCCceEEEEeecCccc--c---hhhhhhhccceeEEEEeccchhhhhhhhhceeecch
Confidence 99999999 99999999999998 89999888865542 1 467889999999999999888888889999999999
Q ss_pred hhchHHHHHHhhccCCCCCCceEEEeeeccccccc-cccccccccccccccccHHHHHHHHHhcccccccccCCceEEEe
Q 022363 159 AVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHL 237 (298)
Q Consensus 159 ~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~-l~~vkhLp~v~~~~~~S~AtA~yw~~r~~~~~~Ikl~~~~vv~L 237 (298)
++++.|+.++++. |.+.++++||+||.+++|++ ++-.++|++++.-++.+|++..||+++++..--.+.+++++++|
T Consensus 154 ~~~~~~l~~~~~~--p~~~~~i~~~~h~~~~lla~r~g~~~~l~~~~l~~~e~e~~~~~~~~~~ns~~~~~~f~~~~~~L 231 (495)
T KOG0853|consen 154 VSACVPLLKQLSG--PDVIIKIYFYCHFPDSLLAKRLGVLKVLYRHALDKIEEETTGLAWKILVNSYFTKRQFKATFVSL 231 (495)
T ss_pred HHHHHHHHHHhcC--CcccceeEEeccchHHHhccccCccceeehhhhhhhhhhhhhccceEecchhhhhhhhhhhhhhc
Confidence 9999999999854 88888999999999999999 56788999999999999999999999998765556668999999
Q ss_pred cCcHHHHHHHHHH---------HHHHHhhHHHHHHhCCCCCCEEEEEecccChhh
Q 022363 238 GNSKELMEVAEDN---------VAKRVLREHVRESLGVRNEDLLFAIINSMNFLL 283 (298)
Q Consensus 238 ~~s~~L~~~a~~~---------va~~~lre~VR~~lGl~~ddvlv~~~~sv~~~~ 283 (298)
+++|..+..+|.+ +++..+++.+|.+.|+.+.|+++..||+++||+
T Consensus 232 ~~~d~~~~y~ei~~s~~~~~~~~~~~~~~~~~r~~~~v~~~d~~~~siN~~~pgk 286 (495)
T KOG0853|consen 232 SNSDITSTYPEIDGSWFTYGQYESHLELRLPVRLYRGVSGIDRFFPSINRFEPGK 286 (495)
T ss_pred CCCCcceeeccccchhccccccccchhcccccceeeeecccceEeeeeeecCCCC
Confidence 9999888888743 456679999999999999999999999999997
No 2
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.63 E-value=1.2e-06 Score=75.35 Aligned_cols=181 Identities=19% Similarity=0.228 Sum_probs=112.6
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh---c---h---hH-H
Q 022363 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK---G---Q---ET-I 145 (298)
Q Consensus 76 kILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k---~---~---~~-i 145 (298)
||++|.+.++.+|+...+.+|++.|.+.|+++.+++...+. .+.+++.+.|+++..-. + . .. .
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~-------~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 73 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRG-------ELGEELEEAGVPVYCLGKRPGRPDPGALLRLY 73 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcch-------hhhHHHHhcCCeEEEEecccccccHHHHHHHH
Confidence 59999999999999999999999999999999999854432 23455666688775321 1 0 11 1
Q ss_pred H--hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccc---cc----------ccccccccccccccccc
Q 022363 146 N--TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---FK----------LDYVKHLPLVAGAMIDS 210 (298)
Q Consensus 146 ~--~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Y---f~----------l~~vkhLp~v~~~~~~S 210 (298)
+ ...++|+|+........ ...+.... ...+|++|.+|+..... .. ..+..+. +..|
T Consensus 74 ~~~~~~~~div~~~~~~~~~-~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------i~~s 144 (365)
T cd03807 74 KLIRRLRPDVVHTWMYHADL-YGGLAARL--AGVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLI------VANS 144 (365)
T ss_pred HHHHhhCCCEEEeccccccH-HHHHHHHh--cCCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeE------Eecc
Confidence 1 24589999987543222 22221111 12459999999987441 11 1222223 4459
Q ss_pred HHHHHHHHHhcccccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecccChhh
Q 022363 211 HVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSMNFLL 283 (298)
Q Consensus 211 ~AtA~yw~~r~~~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~sv~~~~ 283 (298)
+...+++....-+..++.+ ++-+-...... . ....++.+|+++|++++..+++.+.++.+.|
T Consensus 145 ~~~~~~~~~~~~~~~~~~v-----i~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K 206 (365)
T cd03807 145 AAAAEYHQAIGYPPKKIVV-----IPNGVDTERFS----P--DLDARARLREELGLPEDTFLIGIVARLHPQK 206 (365)
T ss_pred HHHHHHHHHcCCChhheeE-----eCCCcCHHhcC----C--cccchHHHHHhcCCCCCCeEEEEecccchhc
Confidence 9999998875223233332 43332222111 0 0113455678999999999999999998865
No 3
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.43 E-value=7.5e-06 Score=72.69 Aligned_cols=186 Identities=11% Similarity=0.098 Sum_probs=113.5
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh--------chhHHH-
Q 022363 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--------GQETIN- 146 (298)
Q Consensus 76 kILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k--------~~~~i~- 146 (298)
|||+++|+++.+|+...+.++++.|.+.|++|.+++..+++. .+.+++...|+.++... ....+.
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEG------DYDDEIEKLGGKIYYIPARKKNPLKYFKKLYK 74 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCc------chHHHHHHcCCeEEEecCCCccHHHHHHHHHH
Confidence 599999999999999999999999999999999999665531 23456666677776321 111111
Q ss_pred --hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccccccc------cc--cccccccccccHHHHHH
Q 022363 147 --TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYV------KH--LPLVAGAMIDSHVTAEY 216 (298)
Q Consensus 147 --~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~l~~v------kh--Lp~v~~~~~~S~AtA~y 216 (298)
...++|+|++++.... ++..+.... ...+.++.|.|+....+....+. +. +.....+...|+..+++
T Consensus 75 ~~~~~~~Dvv~~~~~~~~-~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~ 151 (358)
T cd03812 75 LIKKNKYDIVHVHGSSAS-GFILLAAKK--AGVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKW 151 (358)
T ss_pred HHhcCCCCEEEEeCcchh-HHHHHHHhh--CCCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHH
Confidence 2458999999987633 333222111 23446788899876222211110 00 11222234449999888
Q ss_pred HHHhcccccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecccChhh
Q 022363 217 WKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSMNFLL 283 (298)
Q Consensus 217 w~~r~~~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~sv~~~~ 283 (298)
.... -...++ .|++-+....--. ... ..++. +++.+..++...|+.+.++.|.|
T Consensus 152 ~~~~-~~~~~~-----~vi~ngvd~~~~~----~~~--~~~~~-~~~~~~~~~~~~i~~vGr~~~~K 205 (358)
T cd03812 152 LFGK-VKNKKF-----KVIPNGIDLEKFI----FNE--EIRKK-RRELGILEDKFVIGHVGRFSEQK 205 (358)
T ss_pred HHhC-CCcccE-----EEEeccCcHHHcC----CCc--hhhhH-HHHcCCCCCCEEEEEEecccccc
Confidence 7665 222233 3355443322111 000 01222 77889999999999999999875
No 4
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.40 E-value=2.7e-06 Score=72.28 Aligned_cols=187 Identities=15% Similarity=0.110 Sum_probs=102.6
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCC---cee-ehhchhHHH---hh
Q 022363 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV---QVI-SAKGQETIN---TA 148 (298)
Q Consensus 76 kILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI---~v~-~~k~~~~i~---~A 148 (298)
||+++++....+|+...+.++++.|++.|++|.+++................ ...... ... .......+. ..
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVK-LIPVRVLKLKSLRDLLAILRLRRLLRK 79 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchh-hhceeeeecccccchhHHHHHHHHHHh
Confidence 5899999999999999999999999999999999995544311111000000 000000 000 001111111 24
Q ss_pred hccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccccc-c-----ccccccccccccccHHHHHHHHHhcc
Q 022363 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLD-Y-----VKHLPLVAGAMIDSHVTAEYWKNRTR 222 (298)
Q Consensus 149 ~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~l~-~-----vkhLp~v~~~~~~S~AtA~yw~~r~~ 222 (298)
.++|+|+.++- ...++-....... ..|+++|+|+....+.... . ..-+.....++..|+..++++...+.
T Consensus 80 ~~~dii~~~~~-~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~ 155 (353)
T cd03811 80 EKPDVVISHLT-TTPNVLALLAARL---GTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLKLLG 155 (353)
T ss_pred cCCCEEEEcCc-cchhHHHHHHhhc---CCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHHhhc
Confidence 47999999997 3333333332221 3499999999873333210 0 01122233344459999999999887
Q ss_pred c-ccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecccChh
Q 022363 223 E-RLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSMNFL 282 (298)
Q Consensus 223 ~-~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~sv~~~ 282 (298)
. +.++.. ++-+....... ...+. +..++.+++...|+.+..+.+.
T Consensus 156 ~~~~~~~v-----i~~~~~~~~~~----~~~~~------~~~~~~~~~~~~i~~~g~~~~~ 201 (353)
T cd03811 156 IPPDKIEV-----IYNPIDIEEIR----ALAEE------PLELGIPPDGPVILAVGRLSPQ 201 (353)
T ss_pred CCccccEE-----ecCCcChhhcC----cccch------hhhcCCCCCceEEEEEecchhh
Confidence 2 334443 44333322211 00000 0045667777777777766644
No 5
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.28 E-value=2e-05 Score=67.96 Aligned_cols=189 Identities=13% Similarity=0.036 Sum_probs=100.9
Q ss_pred EEEEEeccC--CCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhh---------hhHHHHHHcCCceeehhchhH
Q 022363 76 LVLLVSHEL--SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY---------SLEHKMWDRGVQVISAKGQET 144 (298)
Q Consensus 76 kILLISHEL--S~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~---------~L~~kll~rgI~v~~~k~~~~ 144 (298)
|||+|++.+ +.+|+.....++++.|.+.|++|.+++..++........ .............+.......
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLVALNGVPVKLFSINVAYGLNLARYLFPPSLLAW 80 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchhhccCceeeecccchhhhhhhhhhccChhHHHH
Confidence 589999999 688999999999999999999999999665542111100 000000000000000001111
Q ss_pred -HHhhhccCEEEEechhchH--HHHHHh-hccCCCCCCceEEEeeeccccccc-cccccc-----------ccccccccc
Q 022363 145 -INTALKADLIVLNTAVAGK--WLDAVL-KEDVPRVLPNVLWWIHEMRGHYFK-LDYVKH-----------LPLVAGAMI 208 (298)
Q Consensus 145 -i~~A~~aDLVIaNT~v~g~--wl~~l~-~~~~p~~~~pVIWWIHE~r~~Yf~-l~~vkh-----------Lp~v~~~~~ 208 (298)
.....++|+|++++.-... ....+. +.+. |+++++|+....|.. ....+. +.....+.+
T Consensus 81 ~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 155 (375)
T cd03821 81 LRLNIREADIVHVHGLWSYPSLAAARAARKYGI-----PYVVSPHGMLDPWALPHKALKKRLAWFLFERRLLQAAAAVHA 155 (375)
T ss_pred HHHhCCCCCEEEEecccchHHHHHHHHHHHhCC-----CEEEEccccccccccccchhhhHHHHHHHHHHHHhcCCEEEE
Confidence 1135689999999743322 222222 2233 999999987654431 000110 111222344
Q ss_pred ccHHHHHHHHHhcccccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecccChhh
Q 022363 209 DSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSMNFLL 283 (298)
Q Consensus 209 ~S~AtA~yw~~r~~~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~sv~~~~ 283 (298)
.|+...++....... .++. |++-+...+... ... .... |++++.+++...|+.+..+++.|
T Consensus 156 ~s~~~~~~~~~~~~~-~~~~-----vi~~~~~~~~~~----~~~---~~~~-~~~~~~~~~~~~i~~~G~~~~~K 216 (375)
T cd03821 156 TSEQEAAEIRRLGLK-APIA-----VIPNGVDIPPFA----ALP---SRGR-RRKFPILPDKRIILFLGRLHPKK 216 (375)
T ss_pred CCHHHHHHHHhhCCc-ccEE-----EcCCCcChhccC----cch---hhhh-hhhccCCCCCcEEEEEeCcchhc
Confidence 466666665544322 2333 244433322221 000 1111 88899999999999998888754
No 6
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.25 E-value=7.2e-06 Score=74.77 Aligned_cols=180 Identities=16% Similarity=0.139 Sum_probs=102.6
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceee------hh--c-----
Q 022363 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS------AK--G----- 141 (298)
Q Consensus 75 KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~------~k--~----- 141 (298)
+||+++.++++.+|+.-++.+||+.|.+.|++|.+++...+.. . ..++..+.++++.. .. .
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~--~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 74 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHHDPS--H----CFEETKDGTLPVRVRGDWLPRSIFGRFHIL 74 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCCCch--h----cchhccCCeeEEEEEeEEEcchhhHhHHHH
Confidence 5799999999999999999999999999999999999543320 0 01122222222211 00 0
Q ss_pred ---hhH--------HHhhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc-----------------
Q 022363 142 ---QET--------INTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK----------------- 193 (298)
Q Consensus 142 ---~~~--------i~~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~----------------- 193 (298)
.+. +....++|+|+++++..+-++-... .. .|+++|+|.....+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~----~~--~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e 148 (392)
T cd03805 75 CAYLRMLYLALYLLLLPDEKYDVFIVDQVSACVPLLKLF----SP--SKILFYCHFPDQLLAQRGSLLKRLYRKPFDWLE 148 (392)
T ss_pred HHHHHHHHHHHHHHhcccCCCCEEEEcCcchHHHHHHHh----cC--CcEEEEEecChHHhcCCCcHHHHHHHHHHHHHH
Confidence 000 0123599999999876655443222 11 4999999953321110
Q ss_pred ---cccccccccccccccccHHHHHHHHHhcccccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCC
Q 022363 194 ---LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED 270 (298)
Q Consensus 194 ---l~~vkhLp~v~~~~~~S~AtA~yw~~r~~~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~dd 270 (298)
..+..++.. .|..++++....++.. +. ....|++=+.+.+... .. ..+..++..+.+++.
T Consensus 149 ~~~~~~ad~ii~------~s~~~~~~~~~~~~~~-~~--~~~~vi~n~vd~~~~~----~~----~~~~~~~~~~~~~~~ 211 (392)
T cd03805 149 EFTTGMADKIVV------NSNFTASVFKKTFPSL-AK--NPREVVYPCVDTDSFE----ST----SEDPDPGLLIPKSGK 211 (392)
T ss_pred HHHhhCceEEEE------cChhHHHHHHHHhccc-cc--CCcceeCCCcCHHHcC----cc----cccccccccccCCCc
Confidence 122333444 4999999988776521 11 1111233333222221 00 011134456677888
Q ss_pred EEEEEecccChhh
Q 022363 271 LLFAIINSMNFLL 283 (298)
Q Consensus 271 vlv~~~~sv~~~~ 283 (298)
.+|+.+....|.|
T Consensus 212 ~~i~~~grl~~~K 224 (392)
T cd03805 212 KTFLSINRFERKK 224 (392)
T ss_pred eEEEEEeeecccC
Confidence 8888888887754
No 7
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=98.16 E-value=4.7e-05 Score=65.97 Aligned_cols=177 Identities=12% Similarity=0.041 Sum_probs=96.7
Q ss_pred EEEEEeccCCC---CCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHH----c-----------CCcee
Q 022363 76 LVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD----R-----------GVQVI 137 (298)
Q Consensus 76 kILLISHELS~---TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~----r-----------gI~v~ 137 (298)
|||+|||...- .|+...+.++++.|.+.|++|.+++.................... . .....
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDYD 80 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccccceeeccccccccCCCchhhhhHHHhcc
Confidence 58999999855 499999999999999999999999955443111110000000000 0 00000
Q ss_pred ehhchhHHH---hhhccCEEEEechhc--hHHHHHHhhccCCCCCCceEEEeeeccccccc----ccccccccccccccc
Q 022363 138 SAKGQETIN---TALKADLIVLNTAVA--GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK----LDYVKHLPLVAGAMI 208 (298)
Q Consensus 138 ~~k~~~~i~---~A~~aDLVIaNT~v~--g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~----l~~vkhLp~v~~~~~ 208 (298)
.......+. ...++|+|++++... ...+..+.+.. -|++..+||....+.. .....++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~-----~~~i~~~hd~~~~~~~~~~~~~~~d~ii~~----- 150 (359)
T cd03823 81 NPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRG-----IPIVLTLHDYWLICPRQGLFKKGGDAVIAP----- 150 (359)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHhcC-----CCEEEEEeeeeeecchhhhhccCCCEEEEe-----
Confidence 000011111 245899999998532 22233332222 3999999985422211 1222345555
Q ss_pred ccHHHHHHHHHhcccccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecccChhh
Q 022363 209 DSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSMNFLL 283 (298)
Q Consensus 209 ~S~AtA~yw~~r~~~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~sv~~~~ 283 (298)
|+..++++.++...+.++. +++-+....... . ..+ +.+++...|+.+.++++.+
T Consensus 151 -s~~~~~~~~~~~~~~~~~~-----vi~n~~~~~~~~----~-----~~~------~~~~~~~~i~~~G~~~~~k 204 (359)
T cd03823 151 -SRFLLDRYVANGLFAEKIS-----VIRNGIDLDRAK----R-----PRR------APPGGRLRFGFIGQLTPHK 204 (359)
T ss_pred -CHHHHHHHHHcCCCccceE-----EecCCcChhhcc----c-----ccc------CCCCCceEEEEEecCcccc
Confidence 9999999987764322332 344443333222 0 000 5677778888887777654
No 8
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.12 E-value=3.8e-05 Score=68.13 Aligned_cols=173 Identities=12% Similarity=0.075 Sum_probs=101.5
Q ss_pred CCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh--------ch---hHH-H--hhh
Q 022363 84 LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--------GQ---ETI-N--TAL 149 (298)
Q Consensus 84 LS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k--------~~---~~i-~--~A~ 149 (298)
++.+|+....++|++.|++.|++|.+++..+. ..+.+...|+.+..-. .. ..+ + ...
T Consensus 7 ~~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (355)
T cd03819 7 LESGGVERGTLELARALVERGHRSLVASAGGR---------LVAELEAEGSRHIKLPFISKNPLRILLNVARLRRLIREE 77 (355)
T ss_pred hccCcHHHHHHHHHHHHHHcCCEEEEEcCCCc---------hHHHHHhcCCeEEEccccccchhhhHHHHHHHHHHHHHc
Confidence 56699999999999999999999999885432 2334444455443211 00 111 1 245
Q ss_pred ccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccc---cc-cccccccccccccccccHHHHHHHHHhcc-cc
Q 022363 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---FK-LDYVKHLPLVAGAMIDSHVTAEYWKNRTR-ER 224 (298)
Q Consensus 150 ~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Y---f~-l~~vkhLp~v~~~~~~S~AtA~yw~~r~~-~~ 224 (298)
++|+|++++... .|...+.... ...|+++++|+..... .. +.+.+++..+ |+.++++.++.++ +.
T Consensus 78 ~~dii~~~~~~~-~~~~~~~~~~---~~~~~i~~~h~~~~~~~~~~~~~~~~~~vi~~------s~~~~~~~~~~~~~~~ 147 (355)
T cd03819 78 KVDIVHARSRAP-AWSAYLAARR---TRPPFVTTVHGFYSVNFRYNAIMARGDRVIAV------SNFIADHIRENYGVDP 147 (355)
T ss_pred CCCEEEECCCch-hHHHHHHHHh---cCCCEEEEeCCchhhHHHHHHHHHhcCEEEEe------CHHHHHHHHHhcCCCh
Confidence 899999987533 2332222111 1249999999875322 11 2234445555 9999999986665 33
Q ss_pred cccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecccChhh
Q 022363 225 LRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSMNFLL 283 (298)
Q Consensus 225 ~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~sv~~~~ 283 (298)
.++.+ ++-+...+....... ..+ ..+.+|+.++.+++..+++....+.+.|
T Consensus 148 ~k~~~-----i~ngi~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~i~~~Gr~~~~K 198 (355)
T cd03819 148 DRIRV-----IPRGVDLDRFDPGAV-PPE--RILALAREWPLPKGKPVILLPGRLTRWK 198 (355)
T ss_pred hhEEE-----ecCCccccccCcccc-chH--HHHHHHHHcCCCCCceEEEEeecccccc
Confidence 34433 444433222110000 001 1223788999999999888888877654
No 9
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=98.11 E-value=5.5e-06 Score=65.66 Aligned_cols=140 Identities=15% Similarity=0.073 Sum_probs=77.1
Q ss_pred EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCC-chhhhhhhHHHH-HHcCCceeehhchhHHH---hhhcc
Q 022363 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSE-EDEVIYSLEHKM-WDRGVQVISAKGQETIN---TALKA 151 (298)
Q Consensus 77 ILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~-~g~v~~~L~~kl-l~rgI~v~~~k~~~~i~---~A~~a 151 (298)
++...|-.+..|+-..+++|++.|.+.|++|.+++...++. ..+......... .........-.....+. ...++
T Consensus 2 li~~~~~~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (177)
T PF13439_consen 2 LITNIFLPNIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEELVKIFVKIPYPIRKRFLRSFFFMRRLRRLIKKEKP 81 (177)
T ss_dssp EEECC-TTSSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SSTEEEE---TT-SSTSS--HHHHHHHHHHHHHHHHT-
T ss_pred EEEEecCCCCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhhccceeeeeecccccccchhHHHHHHHHHHHHHcCC
Confidence 34455566667999999999999999999999999555431 111000000000 00000000001111111 24599
Q ss_pred CEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccc----c--------ccc-------cccccccccccccccccHH
Q 022363 152 DLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG----H--------YFK-------LDYVKHLPLVAGAMIDSHV 212 (298)
Q Consensus 152 DLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~----~--------Yf~-------l~~vkhLp~v~~~~~~S~A 212 (298)
|+|.+|+.....+.-.... ++ |+++.+|.... . |+. .++.+++.++ |+.
T Consensus 82 DiVh~~~~~~~~~~~~~~~-~~-----~~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v------S~~ 149 (177)
T PF13439_consen 82 DIVHIHGPPAFWIALLACR-KV-----PIVYTIHGPYFERRFLKSKLSPYSYLNFRIERKLYKKADRIIAV------SES 149 (177)
T ss_dssp SEEECCTTHCCCHHHHHHH-CS-----CEEEEE-HHH--HHTTTTSCCCHHHHHHCTTHHHHCCSSEEEES------SHH
T ss_pred CeEEecccchhHHHHHhcc-CC-----CEEEEeCCCcccccccccccchhhhhhhhhhhhHHhcCCEEEEE------CHH
Confidence 9998998765544433322 33 99999998651 0 000 2456778888 999
Q ss_pred HHHHHHHhcc-ccccccc
Q 022363 213 TAEYWKNRTR-ERLRIKM 229 (298)
Q Consensus 213 tA~yw~~r~~-~~~~Ikl 229 (298)
+++...+ .+ ++.+|.+
T Consensus 150 ~~~~l~~-~~~~~~ki~v 166 (177)
T PF13439_consen 150 TKDELIK-FGIPPEKIHV 166 (177)
T ss_dssp HHHHHHH-HT--SS-EEE
T ss_pred HHHHHHH-hCCcccCCEE
Confidence 9999999 77 6666665
No 10
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.10 E-value=6.1e-05 Score=66.55 Aligned_cols=182 Identities=16% Similarity=0.155 Sum_probs=103.4
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc-CCceee--hh-------chhHH
Q 022363 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVIS--AK-------GQETI 145 (298)
Q Consensus 76 kILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~r-gI~v~~--~k-------~~~~i 145 (298)
+||++++.++.+|+.-..++|++.|++.|++|.+++..++.. .+. ....... .+.... .. ..+.+
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTGESE-VKP----PIDATIILNLNMSKNPLSFLLALWKLRKIL 75 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeCCCC-ccc----hhhccceEEecccccchhhHHHHHHHHHHH
Confidence 489999999999999999999999999999999998544331 111 0000000 000000 00 01111
Q ss_pred HhhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccc-c-ccc-c-----ccccccccccccccccHHHHHHH
Q 022363 146 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG-H-YFK-L-----DYVKHLPLVAGAMIDSHVTAEYW 217 (298)
Q Consensus 146 ~~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~-~-Yf~-l-----~~vkhLp~v~~~~~~S~AtA~yw 217 (298)
...++|.|.+++.-+. ++..+.+.. ...+|++.+.|.... . +.. . .+......+ |....+++
T Consensus 76 -~~~~pdiv~~~~~~~~-~~~~l~~~~--~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~------s~~~~~~~ 145 (360)
T cd04951 76 -RQFKPDVVHAHMFHAN-IFARLLRLF--LPSPPLICTAHSKNEGGRLRMLAYRLTDFLSDLTTNV------SKEALDYF 145 (360)
T ss_pred -HhcCCCEEEEcccchH-HHHHHHHhh--CCCCcEEEEeeccCchhHHHHHHHHHHhhccCceEEE------cHHHHHHH
Confidence 2358999999876433 233332221 123488999997641 1 100 0 111122233 78888888
Q ss_pred HHhcc-cccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecccChhh
Q 022363 218 KNRTR-ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSMNFLL 283 (298)
Q Consensus 218 ~~r~~-~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~sv~~~~ 283 (298)
.+... +..++ .+++-+....... .. ...++..|+++|+++++.+|..+.++.|.|
T Consensus 146 ~~~~~~~~~~~-----~~i~ng~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~l~~g~~~~~k 201 (360)
T cd04951 146 IASKAFNANKS-----FVVYNGIDTDRFR----KD--PARRLKIRNALGVKNDTFVILAVGRLVEAK 201 (360)
T ss_pred HhccCCCcccE-----EEEccccchhhcC----cc--hHHHHHHHHHcCcCCCCEEEEEEeeCchhc
Confidence 77653 22233 3355554322211 00 113456789999999999999888887754
No 11
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.07 E-value=6.9e-05 Score=64.09 Aligned_cols=189 Identities=14% Similarity=0.125 Sum_probs=101.2
Q ss_pred EEEEeccCCC---CCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhH-------HHHHHc----CCceeehhch
Q 022363 77 VLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLE-------HKMWDR----GVQVISAKGQ 142 (298)
Q Consensus 77 ILLISHELS~---TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~-------~kll~r----gI~v~~~k~~ 142 (298)
||+|+|.... +|+...+.++++.|.+.|++|.+++............... ...... ..........
T Consensus 1 iLii~~~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (377)
T cd03798 1 ILVISSLYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAA 80 (377)
T ss_pred CeEeccCCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHH
Confidence 6889999885 8999999999999999999999999554432111100000 000000 0000000111
Q ss_pred hHHH---h--hhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeecccccccccc------ccccccccccccccH
Q 022363 143 ETIN---T--ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDY------VKHLPLVAGAMIDSH 211 (298)
Q Consensus 143 ~~i~---~--A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~l~~------vkhLp~v~~~~~~S~ 211 (298)
..+. . ..++|+|+++......++........ ..|+++++|+..-.++.... ...+...-.+.+.|+
T Consensus 81 ~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~---~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~ 157 (377)
T cd03798 81 RALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKL---GIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSE 157 (377)
T ss_pred HHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHhc---CCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCH
Confidence 1111 2 56999999997766555554442221 24999999997633332110 011222233445599
Q ss_pred HHHHHHHHhcccccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecccChh
Q 022363 212 VTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSMNFL 282 (298)
Q Consensus 212 AtA~yw~~r~~~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~sv~~~ 282 (298)
...+++.+......++.. ++.+....... ..... +. +.++..++...++.+.++.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~----~~~~~--~~---~~~~~~~~~~~i~~~g~~~~~ 214 (377)
T cd03798 158 ALADELKALGIDPEKVTV-----IPNGVDTERFS----PADRA--EA---RKLGLPEDKKVILFVGRLVPR 214 (377)
T ss_pred HHHHHHHHhcCCCCceEE-----cCCCcCcccCC----CcchH--HH---HhccCCCCceEEEEeccCccc
Confidence 999999876432223332 44333222211 00000 00 455666777777777777664
No 12
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.06 E-value=3.2e-05 Score=66.74 Aligned_cols=185 Identities=16% Similarity=0.088 Sum_probs=101.4
Q ss_pred EEEEEeccCCC--CCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh-----h--------
Q 022363 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA-----K-------- 140 (298)
Q Consensus 76 kILLISHELS~--TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~-----k-------- 140 (298)
|||+|+|.... +|+.....++++.|.+.|++|.+++...+......... ...-...|+++..- .
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKG-YKREEVDGVRVHRVPLPPYKKNGLLKRL 79 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCccccccccc-ceEEecCCeEEEEEecCCCCccchHHHH
Confidence 59999999877 79999999999999999999999995544321111000 00001123333211 0
Q ss_pred ---------chhHHH-hhhccCEEEEec-hhchHHHHHHhhccCCCCCCceEEEeeeccccccc----------------
Q 022363 141 ---------GQETIN-TALKADLIVLNT-AVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK---------------- 193 (298)
Q Consensus 141 ---------~~~~i~-~A~~aDLVIaNT-~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~---------------- 193 (298)
....+. ...++|+|++++ -..........+.. ...|+++|+|+....+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~---~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 156 (394)
T cd03794 80 LNYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLARL---KGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLR 156 (394)
T ss_pred HhhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHHh---cCCCEEEEehhhcchhHHHccCccccchHHHHHH
Confidence 000010 256899999997 11111111111111 123999999985322110
Q ss_pred ------cccccccccccccccccHHHHHHHHHhcccccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCC
Q 022363 194 ------LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVR 267 (298)
Q Consensus 194 ------l~~vkhLp~v~~~~~~S~AtA~yw~~r~~~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~ 267 (298)
+++.+++.+ -|+..++++.....+..++ .+++-+...+... ...+. .. ++.++.+
T Consensus 157 ~~~~~~~~~~d~vi~------~s~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~----~~~~~---~~-~~~~~~~ 217 (394)
T cd03794 157 KLERLIYRRADAIVV------ISPGMREYLVRRGVPPEKI-----SVIPNGVDLELFK----PPPAD---ES-LRKELGL 217 (394)
T ss_pred HHHHHHHhcCCEEEE------ECHHHHHHHHhcCCCcCce-----EEcCCCCCHHHcC----Cccch---hh-hhhccCC
Confidence 122333444 4999999988322232233 3355554444333 11110 11 5566777
Q ss_pred CCCEEEEEecccChhh
Q 022363 268 NEDLLFAIINSMNFLL 283 (298)
Q Consensus 268 ~ddvlv~~~~sv~~~~ 283 (298)
++...|+.+..+++.+
T Consensus 218 ~~~~~i~~~G~~~~~k 233 (394)
T cd03794 218 DDKFVVLYAGNIGRAQ 233 (394)
T ss_pred CCcEEEEEecCccccc
Confidence 8888888888877654
No 13
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.05 E-value=9.1e-05 Score=67.71 Aligned_cols=178 Identities=13% Similarity=0.146 Sum_probs=105.3
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc--------hhHHH
Q 022363 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--------QETIN 146 (298)
Q Consensus 75 KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~--------~~~i~ 146 (298)
.+|+.|...++..|+--++++|++.|.+.|+++.+++..+++ .+.+++.+.|+.+..-.. ...+.
T Consensus 2 ~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 74 (374)
T TIGR03088 2 PLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVS-------AFRKRIQRPDVAFYALHKQPGKDVAVYPQLY 74 (374)
T ss_pred ceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCC-------hhHHHHHhcCceEEEeCCCCCCChHHHHHHH
Confidence 369999999999999999999999999999998888754432 457788888888764321 11111
Q ss_pred ---hhhccCEEEEechhchH--HHHHHhhccCCCCCCce-EEEee-----eccccccc--------cccccccccccccc
Q 022363 147 ---TALKADLIVLNTAVAGK--WLDAVLKEDVPRVLPNV-LWWIH-----EMRGHYFK--------LDYVKHLPLVAGAM 207 (298)
Q Consensus 147 ---~A~~aDLVIaNT~v~g~--wl~~l~~~~~p~~~~pV-IWWIH-----E~r~~Yf~--------l~~vkhLp~v~~~~ 207 (298)
...++|+|.+++..+.. +...+ .. . |+ ++.-| +..+.++. .....++.++
T Consensus 75 ~~l~~~~~Divh~~~~~~~~~~~~~~~--~~----~-~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v---- 143 (374)
T TIGR03088 75 RLLRQLRPDIVHTRNLAALEAQLPAAL--AG----V-PARIHGEHGRDVFDLDGSNWKYRWLRRLYRPLIHHYVAV---- 143 (374)
T ss_pred HHHHHhCCCEEEEcchhHHHHHHHHHh--cC----C-CeEEEeecCcccccchhhHHHHHHHHHHHHhcCCeEEEe----
Confidence 24689999999753321 11111 11 2 33 22112 11111110 0123445566
Q ss_pred cccHHHHHHHHHhcc-cccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecccChhh
Q 022363 208 IDSHVTAEYWKNRTR-ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSMNFLL 283 (298)
Q Consensus 208 ~~S~AtA~yw~~r~~-~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~sv~~~~ 283 (298)
|++++++.++..+ ++.++ +|++-+...+... ... ..++..++....+++..+++.+..+++.|
T Consensus 144 --s~~~~~~~~~~~~~~~~~~-----~vi~ngvd~~~~~----~~~--~~~~~~~~~~~~~~~~~~i~~vGrl~~~K 207 (374)
T TIGR03088 144 --SRDLEDWLRGPVKVPPAKI-----HQIYNGVDTERFH----PSR--GDRSPILPPDFFADESVVVGTVGRLQAVK 207 (374)
T ss_pred --CHHHHHHHHHhcCCChhhE-----EEeccCccccccC----CCc--cchhhhhHhhcCCCCCeEEEEEecCCccc
Confidence 9999999988765 33333 3355444332221 000 01223344556678888998888888754
No 14
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.02 E-value=7e-05 Score=67.27 Aligned_cols=180 Identities=16% Similarity=0.147 Sum_probs=100.2
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce-----eeh-----hchhHH
Q 022363 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-----ISA-----KGQETI 145 (298)
Q Consensus 76 kILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v-----~~~-----k~~~~i 145 (298)
||++++|- ...|++..+.++++.|.+.|++|.+++...+.... ...+.+.-..+++ ... .....+
T Consensus 2 ki~~~~~p-~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 76 (371)
T cd04962 2 KIGIVCYP-TYGGSGVVATELGKALARRGHEVHFITSSRPFRLD----EYSPNIFFHEVEVPQYPLFQYPPYDLALASKI 76 (371)
T ss_pred ceeEEEEe-CCCCccchHHHHHHHHHhcCCceEEEecCCCcchh----hhccCeEEEEecccccchhhcchhHHHHHHHH
Confidence 68888873 46799999999999999999999999854321000 0000000000111 000 011111
Q ss_pred H---hhhccCEEEEechhc----hHHHHHHhhccCCCCCCceEEEeeecccc-------ccc-----ccccccccccccc
Q 022363 146 N---TALKADLIVLNTAVA----GKWLDAVLKEDVPRVLPNVLWWIHEMRGH-------YFK-----LDYVKHLPLVAGA 206 (298)
Q Consensus 146 ~---~A~~aDLVIaNT~v~----g~wl~~l~~~~~p~~~~pVIWWIHE~r~~-------Yf~-----l~~vkhLp~v~~~ 206 (298)
. ...++|+|..++... +-+...+.+ ....|+++.+|+.... |.. +++..+++.+
T Consensus 77 ~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~--- 149 (371)
T cd04962 77 AEVAKRYKLDLLHVHYAVPHAVAAYLAREILG----KKDLPVVTTLHGTDITLVGQDPSFQPATRFSIEKSDGVTAV--- 149 (371)
T ss_pred HHHHhcCCccEEeecccCCccHHHHHHHHhcC----cCCCcEEEEEcCCccccccccccchHHHHHHHhhCCEEEEc---
Confidence 1 235899999986532 122222211 1123899999986421 111 2233334444
Q ss_pred ccccHHHHHHHHHhcccccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecccChhh
Q 022363 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSMNFLL 283 (298)
Q Consensus 207 ~~~S~AtA~yw~~r~~~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~sv~~~~ 283 (298)
|+..+++..+.+....++.+ ++-+.+..... . ..++..|+++|+++++.++..+..+.|.|
T Consensus 150 ---s~~~~~~~~~~~~~~~~i~v-----i~n~~~~~~~~----~----~~~~~~~~~~~~~~~~~~il~~g~l~~~K 210 (371)
T cd04962 150 ---SESLRQETYELFDITKEIEV-----IPNFVDEDRFR----P----KPDEALKRRLGAPEGEKVLIHISNFRPVK 210 (371)
T ss_pred ---CHHHHHHHHHhcCCcCCEEE-----ecCCcCHhhcC----C----CchHHHHHhcCCCCCCeEEEEeccccccc
Confidence 99999998877653334433 44443322111 0 12234577899999999988888777644
No 15
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.01 E-value=5e-05 Score=64.43 Aligned_cols=184 Identities=16% Similarity=0.070 Sum_probs=105.3
Q ss_pred EEEEEeccCCC--CCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHH---HcCCce--eehhc---hhHH
Q 022363 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMW---DRGVQV--ISAKG---QETI 145 (298)
Q Consensus 76 kILLISHELS~--TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll---~rgI~v--~~~k~---~~~i 145 (298)
||++|+|.... +|+...+.++++.|.+.|++|.+++................... ...... ..... ...+
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRL 80 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHH
Confidence 58999998765 59999999999999999999999996544321111000000000 000000 00001 1111
Q ss_pred HhhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc-----------------ccccccccccccccc
Q 022363 146 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-----------------LDYVKHLPLVAGAMI 208 (298)
Q Consensus 146 ~~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~-----------------l~~vkhLp~v~~~~~ 208 (298)
....++|+|+.+......+.....+ ....|+++++|+..-.+.. +++..++..+
T Consensus 81 ~~~~~~Dii~~~~~~~~~~~~~~~~----~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~----- 151 (374)
T cd03801 81 LRRERFDVVHAHDWLALLAAALAAR----LLGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAV----- 151 (374)
T ss_pred hhhcCCcEEEEechhHHHHHHHHHH----hcCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEe-----
Confidence 1356899999999877665432211 1123999999998743320 3444555555
Q ss_pred ccHHHHHHHHHhcccc-cccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecccChhh
Q 022363 209 DSHVTAEYWKNRTRER-LRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSMNFLL 283 (298)
Q Consensus 209 ~S~AtA~yw~~r~~~~-~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~sv~~~~ 283 (298)
|+..++++++.+... .++.+ ++.+....... ... +..++..+.+++...|+.+.++++.+
T Consensus 152 -s~~~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~i~~~g~~~~~k 212 (374)
T cd03801 152 -SEATREELRELGGVPPEKITV-----IPNGVDTERFR----PAP-----RAARRRLGIPEDEPVILFVGRLVPRK 212 (374)
T ss_pred -cHHHHHHHHhcCCCCCCcEEE-----ecCcccccccC----ccc-----hHHHhhcCCcCCCeEEEEecchhhhc
Confidence 999999999988632 33333 43333222221 000 33445566677777777777776654
No 16
>PRK10307 putative glycosyl transferase; Provisional
Probab=97.95 E-value=0.0001 Score=69.11 Aligned_cols=185 Identities=14% Similarity=0.101 Sum_probs=102.1
Q ss_pred cEEEEEeccCC--CCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhh---hh--hhHHHHHHcCCceeehh-------
Q 022363 75 KLVLLVSHELS--LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEV---IY--SLEHKMWDRGVQVISAK------- 140 (298)
Q Consensus 75 KkILLISHELS--~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v---~~--~L~~kll~rgI~v~~~k------- 140 (298)
.||++|||... ..|+.....+|++.|.+.|++|.+++....-..... .. ...++ ..-|+++..-+
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~r~~~~~~~~~ 79 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGEGYSAWRYRRE-SEGGVTVWRCPLYVPKQP 79 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCcccccccceee-ecCCeEEEEccccCCCCc
Confidence 37999998753 358888999999999999999999995421000000 00 00011 11255544211
Q ss_pred -chhH--------------HHhh--hccCEEEEech-----hchHHHHHHhhccCCCCCCceEEEeeeccc------ccc
Q 022363 141 -GQET--------------INTA--LKADLIVLNTA-----VAGKWLDAVLKEDVPRVLPNVLWWIHEMRG------HYF 192 (298)
Q Consensus 141 -~~~~--------------i~~A--~~aDLVIaNT~-----v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~------~Yf 192 (298)
..+. +..+ .++|+|++++- ..+.++.... + .|++.++||..- .+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~~~~--~-----~~~v~~~~d~~~~~~~~~~~~ 152 (412)
T PRK10307 80 SGLKRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLARLS--G-----ARTWLHIQDYEVDAAFGLGLL 152 (412)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHHHhh--C-----CCEEEEeccCCHHHHHHhCCc
Confidence 0000 0111 57899999752 2333444331 2 288888998441 111
Q ss_pred c---------------cccccccccccccccccHHHHHHHHHhcccccccccCCceEEEecCcHHHHHHHHHHHHHHHhh
Q 022363 193 K---------------LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLR 257 (298)
Q Consensus 193 ~---------------l~~vkhLp~v~~~~~~S~AtA~yw~~r~~~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lr 257 (298)
. +++.+. ++.-|++.++++++..-+..+|.+ ++-+...+... ...+. .+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~ad~------ii~~S~~~~~~~~~~~~~~~~i~v-----i~ngvd~~~~~----~~~~~-~~ 216 (412)
T PRK10307 153 KGGKVARLATAFERSLLRRFDN------VSTISRSMMNKAREKGVAAEKVIF-----FPNWSEVARFQ----PVADA-DV 216 (412)
T ss_pred cCcHHHHHHHHHHHHHHhhCCE------EEecCHHHHHHHHHcCCCcccEEE-----ECCCcCHhhcC----CCCcc-ch
Confidence 0 122233 444499999998765323334432 44333322111 01111 24
Q ss_pred HHHHHHhCCCCCCEEEEEecccChhh
Q 022363 258 EHVRESLGVRNEDLLFAIINSMNFLL 283 (298)
Q Consensus 258 e~VR~~lGl~~ddvlv~~~~sv~~~~ 283 (298)
+..|+++|+++++.+++.+..+.+.+
T Consensus 217 ~~~~~~~~~~~~~~~i~~~G~l~~~k 242 (412)
T PRK10307 217 DALRAQLGLPDGKKIVLYSGNIGEKQ 242 (412)
T ss_pred HHHHHHcCCCCCCEEEEEcCcccccc
Confidence 45788999999998888888887753
No 17
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=97.91 E-value=3.6e-05 Score=67.32 Aligned_cols=179 Identities=15% Similarity=0.026 Sum_probs=104.4
Q ss_pred EEEEEeccCCC---CCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHH-HHc-CCceeeh-----hchhHH
Q 022363 76 LVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKM-WDR-GVQVISA-----KGQETI 145 (298)
Q Consensus 76 kILLISHELS~---TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kl-l~r-gI~v~~~-----k~~~~i 145 (298)
+|+++++.+.. +|..-.+.+|++.|.+.|++|.+++...+.............. ... +...... ......
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRLL 80 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHHH
Confidence 58888888876 7999999999999999999999999665431111100000000 000 0000000 011111
Q ss_pred HhhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeecccc----ccc--------------cccccccccccccc
Q 022363 146 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH----YFK--------------LDYVKHLPLVAGAM 207 (298)
Q Consensus 146 ~~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~----Yf~--------------l~~vkhLp~v~~~~ 207 (298)
....++|+|+++.....-. . .. ..|++.++||.--. ++. +++.+++.++
T Consensus 81 ~~~~~~Dii~~~~~~~~~~----~----~~-~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~---- 147 (365)
T cd03809 81 LLLLGLDLLHSPHNTAPLL----R----LR-GVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITV---- 147 (365)
T ss_pred hhhcCCCeeeecccccCcc----c----CC-CCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEc----
Confidence 1235799999999865544 1 11 23999999986421 111 2334445555
Q ss_pred cccHHHHHHHHHhcc-cccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecccChhh
Q 022363 208 IDSHVTAEYWKNRTR-ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSMNFLL 283 (298)
Q Consensus 208 ~~S~AtA~yw~~r~~-~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~sv~~~~ 283 (298)
|+.++++..+.++ +..++.+ ++.+...+.-. ... ++. ++..+..++...++.+.++++.|
T Consensus 148 --s~~~~~~~~~~~~~~~~~~~v-----i~~~~~~~~~~----~~~----~~~-~~~~~~~~~~~~i~~~G~~~~~K 208 (365)
T cd03809 148 --SEATKRDLLRYLGVPPDKIVV-----IPLGVDPRFRP----PPA----EAE-VLRALYLLPRPYFLYVGTIEPRK 208 (365)
T ss_pred --cHHHHHHHHHHhCcCHHHEEe-----eccccCccccC----CCc----hHH-HHHHhcCCCCCeEEEeCCCcccc
Confidence 9999999999886 3334443 55555444332 100 111 55566777888888888887654
No 18
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=97.87 E-value=0.00021 Score=61.88 Aligned_cols=191 Identities=15% Similarity=0.125 Sum_probs=101.3
Q ss_pred EEEEEeccC--CCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHH-------HHHHcCCceeehhchhHHH
Q 022363 76 LVLLVSHEL--SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEH-------KMWDRGVQVISAKGQETIN 146 (298)
Q Consensus 76 kILLISHEL--S~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~-------kll~rgI~v~~~k~~~~i~ 146 (298)
|||++++.. ..+|+.....++++.|.+.|++|.+++...++........... ...+........+....+.
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEVVVVRPFRVPTFKYPDFRLPLPIPRALIIIL 80 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCcccccccccccccccchhhhhhccccHHHHHHHHH
Confidence 588999887 5679999999999999999999999996554321111000000 0000000000011111111
Q ss_pred hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc---c------c-----cccc-cccccccccccH
Q 022363 147 TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK---L------D-----YVKH-LPLVAGAMIDSH 211 (298)
Q Consensus 147 ~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~---l------~-----~vkh-Lp~v~~~~~~S~ 211 (298)
...++|+|++.+-....++....... ...|+++++|.....|.. . . ..+. +.....++..|+
T Consensus 81 ~~~~~Div~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~ 157 (374)
T cd03817 81 KELGPDIVHTHTPFSLGLLGLRVARK---LGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSE 157 (374)
T ss_pred hhcCCCEEEECCchhhhhHHHHHHHH---cCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccH
Confidence 34689999998753333222221111 122899999986543322 0 0 0000 122233455599
Q ss_pred HHHHHHHHhcccccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecccChhh
Q 022363 212 VTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSMNFLL 283 (298)
Q Consensus 212 AtA~yw~~r~~~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~sv~~~~ 283 (298)
..+++++....+ .+ ..|++-+-..+... .. .++..|+.++.+++...|+.+..+.+.+
T Consensus 158 ~~~~~~~~~~~~-~~-----~~vi~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~i~~~G~~~~~k 215 (374)
T cd03817 158 KIADLLREYGVK-RP-----IEVIPTGIDLDRFE----PV----DGDDERRKLGIPEDEPVLLYVGRLAKEK 215 (374)
T ss_pred HHHHHHHhcCCC-Cc-----eEEcCCccchhccC----cc----chhHHHHhcCCCCCCeEEEEEeeeeccc
Confidence 888888764322 12 23344433332222 00 1122267788888888888888776544
No 19
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=97.78 E-value=8.2e-05 Score=65.51 Aligned_cols=127 Identities=11% Similarity=-0.001 Sum_probs=80.9
Q ss_pred cEEEEEeccC------CCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce----e---ehhc
Q 022363 75 KLVLLVSHEL------SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV----I---SAKG 141 (298)
Q Consensus 75 KkILLISHEL------S~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v----~---~~k~ 141 (298)
+||++|++.. ...|+.....+|++.|++.|++|.+++..++...... .......... . ....
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 75 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAPL-----VPVVPEPLRLDAPGRDRAEAEA 75 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccce-----eeccCCCcccccchhhHhhHHH
Confidence 4799999998 7889999999999999999999999996554311111 0000000000 0 0001
Q ss_pred hhHH---HhhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc-----cccccccccccccccccHHH
Q 022363 142 QETI---NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-----LDYVKHLPLVAGAMIDSHVT 213 (298)
Q Consensus 142 ~~~i---~~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~-----l~~vkhLp~v~~~~~~S~At 213 (298)
...+ -...++|+|.+|+.....+ ... ....|+|+++|.....+.. .....++.++ |+..
T Consensus 76 ~~~~~~~~~~~~~Divh~~~~~~~~~--~~~-----~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~------s~~~ 142 (335)
T cd03802 76 LALAERALAAGDFDIVHNHSLHLPLP--FAR-----PLPVPVVTTLHGPPDPELLKLYYAARPDVPFVSI------SDAQ 142 (335)
T ss_pred HHHHHHHHhcCCCCEEEecCcccchh--hhc-----ccCCCEEEEecCCCCcccchHHHhhCcCCeEEEe------cHHH
Confidence 1111 1245899999999877765 121 1223999999988744332 2334446666 9999
Q ss_pred HHHHHH
Q 022363 214 AEYWKN 219 (298)
Q Consensus 214 A~yw~~ 219 (298)
.++|..
T Consensus 143 ~~~~~~ 148 (335)
T cd03802 143 RRPWPP 148 (335)
T ss_pred Hhhccc
Confidence 999976
No 20
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=97.69 E-value=0.00037 Score=61.78 Aligned_cols=81 Identities=23% Similarity=0.333 Sum_probs=58.2
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhccCEEE
Q 022363 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIV 155 (298)
Q Consensus 76 kILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~aDLVI 155 (298)
|||++++..+.+|+.....++++.|++.|++|.+++.... .+.. .+ ...++|+|.
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~--------~~~~----------------~~-~~~~~diih 56 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK--------ALIS----------------KI-EIINADIVH 56 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc--------hhhh----------------Ch-hcccCCEEE
Confidence 7999999998899999999999999999999999995532 1111 11 256889888
Q ss_pred Eechhch----HHHHHHhhccCCCCCCceEEEeeec
Q 022363 156 LNTAVAG----KWLDAVLKEDVPRVLPNVLWWIHEM 187 (298)
Q Consensus 156 aNT~v~g----~wl~~l~~~~~p~~~~pVIWWIHE~ 187 (298)
++....+ .++..+. .+. |+|+.+|+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~-~~~-----~~v~~~hd~ 86 (365)
T cd03825 57 LHWIHGGFLSIEDLSKLL-DRK-----PVVWTLHDM 86 (365)
T ss_pred EEccccCccCHHHHHHHH-cCC-----CEEEEcccC
Confidence 7664332 2222221 133 999999986
No 21
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.58 E-value=0.00069 Score=62.59 Aligned_cols=186 Identities=18% Similarity=0.229 Sum_probs=98.4
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHH--cCCce-eehhchhHHH------
Q 022363 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD--RGVQV-ISAKGQETIN------ 146 (298)
Q Consensus 76 kILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~--rgI~v-~~~k~~~~i~------ 146 (298)
||+++++-++..|..-.++++++.|.+.|++|.+++...++ +.. ...+++.. .|.+. +.......+.
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~---~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 76 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDP---EFF-NVTKKFHNALQGADIELSEEEKEIYLEWNEEN 76 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCCh---hHH-HHHHHhhHhhcCCCCCCCHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999854432 111 11112111 24443 2221111111
Q ss_pred -----hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc--ccccccc-ccccccccccHHHHHHHH
Q 022363 147 -----TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK--LDYVKHL-PLVAGAMIDSHVTAEYWK 218 (298)
Q Consensus 147 -----~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~--l~~vkhL-p~v~~~~~~S~AtA~yw~ 218 (298)
...++|+|.+++....- +....+ ....|+|++.|.....|.. ..+.+.+ -....+++.| .++-.
T Consensus 77 ~~~~~~~~~~Dvv~~h~~~~~~-~~~~~~----~~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~d~~i~~~---~~~~~ 148 (372)
T cd03792 77 AERPLLDLDADVVVIHDPQPLA-LPLFKK----KRGRPWIWRCHIDLSSPNRRVWDFLQPYIEDYDAAVFHL---PEYVP 148 (372)
T ss_pred hccccccCCCCEEEECCCCchh-HHHhhh----cCCCeEEEEeeeecCCCcHHHHHHHHHHHHhCCEEeecH---HHhcC
Confidence 13489999999875322 222221 1123899999976543321 0111111 1111122223 12211
Q ss_pred HhcccccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecccChhh
Q 022363 219 NRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSMNFLL 283 (298)
Q Consensus 219 ~r~~~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~sv~~~~ 283 (298)
... + ++..|++-+....-.. ...... ..++..|+++|+++|..+|+.+..+.|.|
T Consensus 149 ~~~-~------~~~~vipngvd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~i~~vgrl~~~K 203 (372)
T cd03792 149 PQV-P------PRKVIIPPSIDPLSGK--NRELSP-ADIEYILEKYGIDPERPYITQVSRFDPWK 203 (372)
T ss_pred CCC-C------CceEEeCCCCCCCccc--cCCCCH-HHHHHHHHHhCCCCCCcEEEEEecccccc
Confidence 111 1 1122454443321100 000001 13456788899999999999988887753
No 22
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.53 E-value=0.0022 Score=56.95 Aligned_cols=171 Identities=13% Similarity=0.146 Sum_probs=91.1
Q ss_pred EEEEE-eccC--CCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhch----------
Q 022363 76 LVLLV-SHEL--SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ---------- 142 (298)
Q Consensus 76 kILLI-SHEL--S~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~---------- 142 (298)
||++| ++.. ...|+...+.++++.|.+.|++|.+++...+... .+....|+++..-...
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~~~~~~~~ 72 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQ--------KETEYNGVRLIHIPAPEIGGLGTIIY 72 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCC--------cccccCCceEEEcCCCCccchhhhHH
Confidence 46777 4433 5679999999999999999999999996544211 0222345555422110
Q ss_pred --hHHHhh--hccCEEEEec--hhchHHHHHHhhccCCCCCCceEEEeeeccc---cccc-------------ccccccc
Q 022363 143 --ETINTA--LKADLIVLNT--AVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG---HYFK-------------LDYVKHL 200 (298)
Q Consensus 143 --~~i~~A--~~aDLVIaNT--~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~---~Yf~-------------l~~vkhL 200 (298)
..+..+ ...|.+++.+ -....+...+.+. ..|+++++|+..- .|.. ..+.+++
T Consensus 73 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~i 147 (363)
T cd04955 73 DILAILHALFVKRDIDHVHALGPAIAPFLPLLRLK-----GKKVVVNMDGLEWKRAKWGRPAKRYLKFGEKLAVKFADRL 147 (363)
T ss_pred HHHHHHHHHhccCCeEEEEecCccHHHHHHHHHhc-----CCCEEEEccCcceeecccccchhHHHHHHHHHHHhhccEE
Confidence 011111 2444444433 2222333322211 2399999998641 1110 1223344
Q ss_pred ccccccccccHHHHHHHHHhcccccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecccC
Q 022363 201 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSMN 280 (298)
Q Consensus 201 p~v~~~~~~S~AtA~yw~~r~~~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~sv~ 280 (298)
+.+ |+.++++.+..++... .+++-+.+.+... . +...++.++++++..+ ..+..+.
T Consensus 148 i~~------s~~~~~~~~~~~~~~~-------~~i~ngv~~~~~~----~------~~~~~~~~~~~~~~~i-~~~G~~~ 203 (363)
T cd04955 148 IAD------SPGIKEYLKEKYGRDS-------TYIPYGADHVVSS----E------EDEILKKYGLEPGRYY-LLVGRIV 203 (363)
T ss_pred EeC------CHHHHHHHHHhcCCCC-------eeeCCCcChhhcc----h------hhhhHHhcCCCCCcEE-EEEeccc
Confidence 444 9999999987776321 3344444433222 1 2234556777766653 3455555
Q ss_pred hhh
Q 022363 281 FLL 283 (298)
Q Consensus 281 ~~~ 283 (298)
+.|
T Consensus 204 ~~K 206 (363)
T cd04955 204 PEN 206 (363)
T ss_pred ccC
Confidence 543
No 23
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=97.51 E-value=0.0014 Score=57.37 Aligned_cols=40 Identities=20% Similarity=0.147 Sum_probs=35.3
Q ss_pred EEEEEeccCC-CCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 022363 76 LVLLVSHELS-LSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (298)
Q Consensus 76 kILLISHELS-~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (298)
||++|+.... ..|..-...+|++.|.+.|++|.++....+
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAAL 41 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecc
Confidence 5899998888 679999999999999999999999985544
No 24
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=97.51 E-value=0.0014 Score=55.85 Aligned_cols=131 Identities=16% Similarity=0.092 Sum_probs=74.5
Q ss_pred EEEEEeccCC-CCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceee-------hhchhHHH-
Q 022363 76 LVLLVSHELS-LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS-------AKGQETIN- 146 (298)
Q Consensus 76 kILLISHELS-~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~-------~k~~~~i~- 146 (298)
||+++++... .+|+...++++++.|.+.|++|.+++....+ .... .+.+.+.-..++... -.....+.
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGE-PPFY--ELDPKIKVIDLGDKRDSKLLARFKKLRRLRK 77 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCC-CCcc--ccCCccceeecccccccchhccccchHHHHH
Confidence 5888999998 8999999999999999999999999955442 0000 111111111111100 01111111
Q ss_pred --hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeecccccccccc-----ccccccccccccccHHHH
Q 022363 147 --TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDY-----VKHLPLVAGAMIDSHVTA 214 (298)
Q Consensus 147 --~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~l~~-----vkhLp~v~~~~~~S~AtA 214 (298)
...++|+|+.+..-...++..+. .. ..|++.|.|.....+..... ..-+.....+...|+..+
T Consensus 78 ~l~~~~~d~i~~~~~~~~~~~~~~~-~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~ 147 (348)
T cd03820 78 LLKNNKPDVVISFLTSLLTFLASLG-LK----IVKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDR 147 (348)
T ss_pred hhcccCCCEEEEcCchHHHHHHHHh-hc----cccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHH
Confidence 24699999999876333333332 11 13899999987644433110 011223333445588887
No 25
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=97.49 E-value=0.0013 Score=59.30 Aligned_cols=184 Identities=15% Similarity=0.079 Sum_probs=97.7
Q ss_pred EEEEeccCC--CCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh--------------
Q 022363 77 VLLVSHELS--LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-------------- 140 (298)
Q Consensus 77 ILLISHELS--~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k-------------- 140 (298)
+++.++..+ ..|+...+.+|++.|.+.|++|.+++....++.... .....|+.+..-.
T Consensus 9 ~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (398)
T cd03800 9 GSPLAQPGGADTGGQNVYVLELARALARLGHEVDIFTRRIDDALPPI------VELAPGVRVVRVPAGPAEYLPKEELWP 82 (398)
T ss_pred ccccccCCCCCCCceeehHHHHHHHHhccCceEEEEEecCCcccCCc------cccccceEEEecccccccCCChhhcch
Confidence 445555554 569999999999999999999999985443211110 1111233332110
Q ss_pred ----chhHH-H--hhh--ccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc-c-ccc------------
Q 022363 141 ----GQETI-N--TAL--KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-L-DYV------------ 197 (298)
Q Consensus 141 ----~~~~i-~--~A~--~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~-l-~~v------------ 197 (298)
....+ + ... ++|+|+.+....+.+...+.+. ...|+|++.|+....+.. . .+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (398)
T cd03800 83 YLDEFADDLLRFLRREGGRPDLIHAHYWDSGLVALLLARR----LGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEE 158 (398)
T ss_pred hHHHHHHHHHHHHHhcCCCccEEEEecCccchHHHHHHhh----cCCceEEEeecccccCCcccccccccchhhhhhHHH
Confidence 00111 1 122 8899999976554444333211 123899999987532211 0 000
Q ss_pred cccccccccccccHHHHHHHHHhcc-cccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEe
Q 022363 198 KHLPLVAGAMIDSHVTAEYWKNRTR-ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 276 (298)
Q Consensus 198 khLp~v~~~~~~S~AtA~yw~~r~~-~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~ 276 (298)
..+-....++..|+...++..+.+. +..++.+ ++-+-..+... ... ..+..|+.++.++++.+|+..
T Consensus 159 ~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~v-----i~ng~~~~~~~----~~~---~~~~~~~~~~~~~~~~~i~~~ 226 (398)
T cd03800 159 RLLRAADRVIASTPQEAEELYSLYGAYPRRIRV-----VPPGVDLERFT----PYG---RAEARRARLLRDPDKPRILAV 226 (398)
T ss_pred HHHhhCCEEEEcCHHHHHHHHHHccccccccEE-----ECCCCCcccee----ccc---chhhHHHhhccCCCCcEEEEE
Confidence 0011122244559999998888775 3323332 43332211111 000 111226677888888888888
Q ss_pred cccChh
Q 022363 277 NSMNFL 282 (298)
Q Consensus 277 ~sv~~~ 282 (298)
..+.+.
T Consensus 227 gr~~~~ 232 (398)
T cd03800 227 GRLDPR 232 (398)
T ss_pred cccccc
Confidence 877764
No 26
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.42 E-value=0.0023 Score=56.59 Aligned_cols=181 Identities=19% Similarity=0.108 Sum_probs=96.4
Q ss_pred EEEEEeccCC--CCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh----------chh
Q 022363 76 LVLLVSHELS--LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK----------GQE 143 (298)
Q Consensus 76 kILLISHELS--~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k----------~~~ 143 (298)
|||.|++... ..|+...+.++++.|.+.|++|.+++...+... .+....++++..-+ ...
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVLCASPEPKG--------RDEERNGHRVIRAPSLLNVASTPFSPS 72 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCCCceEEEecCCCCcc--------hhhhccCceEEEeecccccccccccHH
Confidence 5899998876 579999999999999999999999996544311 11112232222110 011
Q ss_pred HHH----hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeecccc------cccccccc-ccccccccccccHH
Q 022363 144 TIN----TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH------YFKLDYVK-HLPLVAGAMIDSHV 212 (298)
Q Consensus 144 ~i~----~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~------Yf~l~~vk-hLp~v~~~~~~S~A 212 (298)
.+. ...++|.|+.++............. ...|.+++.|+.... ++. ...+ -+....+++..|+.
T Consensus 73 ~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~-~~~~~~~~~~d~vi~~s~~ 147 (357)
T cd03795 73 FFKQLKKLAKKADVIHLHFPNPLADLALLLLP----RKKPVVVHWHSDIVKQKLLLKLYR-PLQRRFLRRADAIVATSPN 147 (357)
T ss_pred HHHHHHhcCCCCCEEEEecCcchHHHHHHHhc----cCceEEEEEcChhhccchhhhhhh-HHHHHHHHhcCEEEeCcHH
Confidence 111 2568999999886543222222111 123889999974311 111 0000 11222234444999
Q ss_pred HHHHHHHhcccccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecccChhh
Q 022363 213 TAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSMNFLL 283 (298)
Q Consensus 213 tA~yw~~r~~~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~sv~~~~ 283 (298)
..++.........++ .+++.+.+...... . .. .+. +..+.+++...|+.+..+++.|
T Consensus 148 ~~~~~~~~~~~~~~~-----~~i~~gi~~~~~~~---~-~~--~~~---~~~~~~~~~~~i~~~G~~~~~K 204 (357)
T cd03795 148 YAETSPVLRRFRDKV-----RVIPLGLDPARYPR---P-DA--LEE---AIWRRAAGRPFFLFVGRLVYYK 204 (357)
T ss_pred HHHHHHHhcCCccce-----EEecCCCChhhcCC---c-ch--hhh---HhhcCCCCCcEEEEeccccccc
Confidence 888776655432232 33544443322110 0 00 011 3345566777777777776654
No 27
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=97.36 E-value=0.0034 Score=53.78 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=77.5
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc-------------h
Q 022363 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG-------------Q 142 (298)
Q Consensus 76 kILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~-------------~ 142 (298)
||++|++. ..|+...+.++++.|++.|++|.+++...+... .+...|+.+..-+. .
T Consensus 1 kIl~i~~~--~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (359)
T cd03808 1 KILHIVTV--DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE---------ELEALGVKVIPIPLDRRGINPFKDLKAL 69 (359)
T ss_pred CeeEEEec--chhHHHHHHHHHHHHHhcCCeeEEEecCCCccc---------ccccCCceEEeccccccccChHhHHHHH
Confidence 58999999 678999999999999999999999996654311 23333444332110 0
Q ss_pred hHHH---hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccccc-------cc-cc-ccccccccccc
Q 022363 143 ETIN---TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLD-------YV-KH-LPLVAGAMIDS 210 (298)
Q Consensus 143 ~~i~---~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~l~-------~v-kh-Lp~v~~~~~~S 210 (298)
..+. ...++|+|++++.-.+-+ ..+... ....++++.++|+..-.+.... +. +. +...-+++..|
T Consensus 70 ~~~~~~~~~~~~dvv~~~~~~~~~~-~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 146 (359)
T cd03808 70 LRLYRLLRKERPDIVHTHTPKPGIL-GRLAAR--LAGVPKVIYTVHGLGFVFTSGGLKRRLYLLLERLALRFTDKVIFQN 146 (359)
T ss_pred HHHHHHHHhcCCCEEEEccccchhH-HHHHHH--HcCCCCEEEEecCcchhhccchhHHHHHHHHHHHHHhhccEEEEcC
Confidence 1111 235899999997643322 222211 0124589999998642211100 00 00 11112344449
Q ss_pred HHHHHHHHHhcc
Q 022363 211 HVTAEYWKNRTR 222 (298)
Q Consensus 211 ~AtA~yw~~r~~ 222 (298)
+...+++.+...
T Consensus 147 ~~~~~~~~~~~~ 158 (359)
T cd03808 147 EDDRDLALKLGI 158 (359)
T ss_pred HHHHHHHHHhcC
Confidence 999999988764
No 28
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=97.30 E-value=0.0028 Score=57.84 Aligned_cols=172 Identities=12% Similarity=0.069 Sum_probs=98.1
Q ss_pred EEEEEeccCC---CCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh----------ch
Q 022363 76 LVLLVSHELS---LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK----------GQ 142 (298)
Q Consensus 76 kILLISHELS---~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k----------~~ 142 (298)
||++|++... ..|+...+.+|++.|++. ++|.+++...+. ....|+++..-. ..
T Consensus 2 kI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 68 (388)
T TIGR02149 2 KVTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFGDQR------------FDSEGLTVKGYRPWSELKEANKAL 68 (388)
T ss_pred eeEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCCCch------------hcCCCeEEEEecChhhccchhhhh
Confidence 6999999886 368889999999999886 566666643221 112244433110 00
Q ss_pred hHHH-------hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccc--cc---------cc--------ccc
Q 022363 143 ETIN-------TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG--HY---------FK--------LDY 196 (298)
Q Consensus 143 ~~i~-------~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~--~Y---------f~--------l~~ 196 (298)
..+. ...++|+|.+++..++ +.-.+.+. ....|+++.+|+..- .| .- +.+
T Consensus 69 ~~~~~~~~~~~~~~~~divh~~~~~~~-~~~~~~~~---~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (388)
T TIGR02149 69 GTFSVDLAMANDPVDADVVHSHTWYTF-LAGHLAKK---LYDKPLVVTAHSLEPLRPWKEEQLGGGYKLSSWAEKTAIEA 144 (388)
T ss_pred hhhhHHHHHhhCCCCCCeEeecchhhh-hHHHHHHH---hcCCCEEEEeecccccccccccccccchhHHHHHHHHHHhh
Confidence 1111 1236999999875332 11111100 012389999998641 11 00 122
Q ss_pred ccccccccccccccHHHHHHHHHhc-c-cccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEE
Q 022363 197 VKHLPLVAGAMIDSHVTAEYWKNRT-R-ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFA 274 (298)
Q Consensus 197 vkhLp~v~~~~~~S~AtA~yw~~r~-~-~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~ 274 (298)
...+.+ .|+.++++..+++ + ++.+|. |++-+...+... . ..++..|+++|++++..+|.
T Consensus 145 ad~vi~------~S~~~~~~~~~~~~~~~~~~i~-----vi~ng~~~~~~~----~----~~~~~~~~~~~~~~~~~~i~ 205 (388)
T TIGR02149 145 ADRVIA------VSGGMREDILKYYPDLDPEKVH-----VIYNGIDTKEYK----P----DDGNVVLDRYGIDRSRPYIL 205 (388)
T ss_pred CCEEEE------ccHHHHHHHHHHcCCCCcceEE-----EecCCCChhhcC----C----CchHHHHHHhCCCCCceEEE
Confidence 333444 4999999998876 2 333443 355444332221 0 12445788899999988888
Q ss_pred EecccChhh
Q 022363 275 IINSMNFLL 283 (298)
Q Consensus 275 ~~~sv~~~~ 283 (298)
.+..+.|.|
T Consensus 206 ~~Grl~~~K 214 (388)
T TIGR02149 206 FVGRITRQK 214 (388)
T ss_pred EEccccccc
Confidence 888888753
No 29
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=97.07 E-value=0.0018 Score=50.51 Aligned_cols=124 Identities=19% Similarity=0.167 Sum_probs=65.0
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh------------hchhHHH-----hhh
Q 022363 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA------------KGQETIN-----TAL 149 (298)
Q Consensus 87 TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~------------k~~~~i~-----~A~ 149 (298)
+|+.....+|++.|.+.|++|.+++.+.++.. .+....|+++..- +....+. ...
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 72 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPED--------DEEEEDGVRVHRLPLPRRPWPLRLLRFLRRLRRLLAARRE 72 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG---------SEEETTEEEEEE--S-SSSGGGHCCHHHHHHHHCHHCT-
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCcc--------cccccCCceEEeccCCccchhhhhHHHHHHHHHHHhhhcc
Confidence 58889999999999999999999995544311 1122334444311 0111221 236
Q ss_pred ccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccc-cc-------------cccccccccccccccccHHHHH
Q 022363 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-FK-------------LDYVKHLPLVAGAMIDSHVTAE 215 (298)
Q Consensus 150 ~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Y-f~-------------l~~vkhLp~v~~~~~~S~AtA~ 215 (298)
++|+|.++...+ .++..+.+.. . ..|+|..+|+....+ .. +++.+++.. .|+.+++
T Consensus 73 ~~Dvv~~~~~~~-~~~~~~~~~~--~-~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~------~S~~~~~ 142 (160)
T PF13579_consen 73 RPDVVHAHSPTA-GLVAALARRR--R-GIPLVVTVHGTLFRRGSRWKRRLYRWLERRLLRRADRVIV------VSEAMRR 142 (160)
T ss_dssp --SEEEEEHHHH-HHHHHHHHHH--H-T--EEEE-SS-T------HHHHHHHHHHHHHHHH-SEEEE------SSHHHHH
T ss_pred CCeEEEecccch-hHHHHHHHHc--c-CCcEEEEECCCchhhccchhhHHHHHHHHHHHhcCCEEEE------CCHHHHH
Confidence 999999999643 3333343211 1 239999999864221 11 233333444 4999999
Q ss_pred HHHHhcc-ccccccc
Q 022363 216 YWKNRTR-ERLRIKM 229 (298)
Q Consensus 216 yw~~r~~-~~~~Ikl 229 (298)
+... ++ ++.+|.+
T Consensus 143 ~l~~-~g~~~~ri~v 156 (160)
T PF13579_consen 143 YLRR-YGVPPDRIHV 156 (160)
T ss_dssp HHHH-H---GGGEEE
T ss_pred HHHH-hCCCCCcEEE
Confidence 9999 55 6667765
No 30
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.95 E-value=0.0054 Score=53.51 Aligned_cols=188 Identities=15% Similarity=0.093 Sum_probs=93.0
Q ss_pred EEEEEeccCCC--CCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhh--h--hHHHHHHcCCceeehhchhHHH---
Q 022363 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY--S--LEHKMWDRGVQVISAKGQETIN--- 146 (298)
Q Consensus 76 kILLISHELS~--TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~--~--L~~kll~rgI~v~~~k~~~~i~--- 146 (298)
||++|++...- +|+...+.+|++.|.+.|++|.+++...+........ . ....-...++...... ...+.
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 79 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPARVVPVPSVPLPGYPEIRLALPP-RRRVRRLL 79 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCCCceeecccccCcccceEecccc-hhhHHHHH
Confidence 47888866543 6999999999999999999999999554321100000 0 0000000011111111 11111
Q ss_pred hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeecccccccc---ccccc---------cccccccccccHHHH
Q 022363 147 TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL---DYVKH---------LPLVAGAMIDSHVTA 214 (298)
Q Consensus 147 ~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~l---~~vkh---------Lp~v~~~~~~S~AtA 214 (298)
...++|+|++++.....+....... ....|+++++|+.-..|... ..... +.....+.+.|+...
T Consensus 80 ~~~~pdii~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~ 156 (364)
T cd03814 80 DAFAPDVVHIATPGPLGLAALRAAR---RLGIPVVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLA 156 (364)
T ss_pred HhcCCCEEEEeccchhhHHHHHHHH---HcCCCEEEEEecChHHHhhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHH
Confidence 2458999999865432222222111 11228999999864333220 00000 112233556699998
Q ss_pred HHHHHhcccccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecccChh
Q 022363 215 EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSMNFL 282 (298)
Q Consensus 215 ~yw~~r~~~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~sv~~~ 282 (298)
++..+...+ ++. +++-+...+.... . ...+..+++++ +++..+++.++++++.
T Consensus 157 ~~~~~~~~~--~~~-----~~~~g~~~~~~~~---~----~~~~~~~~~~~-~~~~~~i~~~G~~~~~ 209 (364)
T cd03814 157 DELRARGFR--RVR-----LWPRGVDTELFHP---R----RRDEALRARLG-PPDRPVLLYVGRLAPE 209 (364)
T ss_pred HHHhccCCC--cee-----ecCCCccccccCc---c----cccHHHHHHhC-CCCCeEEEEEeccccc
Confidence 866543322 222 2333322222110 0 01223455666 6666777777777653
No 31
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=96.87 E-value=0.06 Score=52.31 Aligned_cols=198 Identities=15% Similarity=0.113 Sum_probs=102.0
Q ss_pred ccccccEEEEEeccC---CCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHH-HHHHcCCcee------eh
Q 022363 70 SFMKSKLVLLVSHEL---SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEH-KMWDRGVQVI------SA 139 (298)
Q Consensus 70 ~f~~~KkILLISHEL---S~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~-kll~rgI~v~------~~ 139 (298)
+..+-++|+++.|.. ...|....+.++++.|++.|++|.+++...+..+ +. .+..- ......++.. ..
T Consensus 54 ~~~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~-~~-~g~~v~~~~~~~~~~~~~~~~~~~ 131 (465)
T PLN02871 54 SRSRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQ-EF-HGAKVIGSWSFPCPFYQKVPLSLA 131 (465)
T ss_pred ccCCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCc-cc-cCceeeccCCcCCccCCCceeecc
Confidence 337778999999753 3468889999999999999999999996544211 00 00000 0000001100 00
Q ss_pred hchhHHH--hhhccCEEEEechhchHHHHHHh--hccCCCCCCceEEEeeeccccccc---ccc--------ccc-cccc
Q 022363 140 KGQETIN--TALKADLIVLNTAVAGKWLDAVL--KEDVPRVLPNVLWWIHEMRGHYFK---LDY--------VKH-LPLV 203 (298)
Q Consensus 140 k~~~~i~--~A~~aDLVIaNT~v~g~wl~~l~--~~~~p~~~~pVIWWIHE~r~~Yf~---l~~--------vkh-Lp~v 203 (298)
...+..+ ...++|+|.+++--...|...+. +.+. |+|...|.....|.. .+. .+. ....
T Consensus 132 ~~~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~i-----p~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~a 206 (465)
T PLN02871 132 LSPRIISEVARFKPDLIHASSPGIMVFGALFYAKLLCV-----PLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAA 206 (465)
T ss_pred CCHHHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCC-----CEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhC
Confidence 0111111 24689999998743222222111 1222 888888875433221 000 011 1112
Q ss_pred cccccccHHHHHHHHHhcc-cccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhC-CCCCCEEEEEecccCh
Q 022363 204 AGAMIDSHVTAEYWKNRTR-ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLG-VRNEDLLFAIINSMNF 281 (298)
Q Consensus 204 ~~~~~~S~AtA~yw~~r~~-~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lG-l~~ddvlv~~~~sv~~ 281 (298)
..++..|+..+++..+... +..+|.+ ++-+...+.-. .. ..++..|+.++ .++++.+|+.+.++.+
T Consensus 207 d~ii~~S~~~~~~l~~~~~~~~~kv~v-----i~nGvd~~~f~----p~---~~~~~~~~~~~~~~~~~~~i~~vGrl~~ 274 (465)
T PLN02871 207 DLTLVTSPALGKELEAAGVTAANRIRV-----WNKGVDSESFH----PR---FRSEEMRARLSGGEPEKPLIVYVGRLGA 274 (465)
T ss_pred CEEEECCHHHHHHHHHcCCCCcCeEEE-----eCCccCccccC----Cc---cccHHHHHHhcCCCCCCeEEEEeCCCch
Confidence 2345559999999987642 2334443 44444332211 00 01122344443 3457778888888887
Q ss_pred hhHHH
Q 022363 282 LLIRS 286 (298)
Q Consensus 282 ~~~~~ 286 (298)
.|--.
T Consensus 275 ~K~~~ 279 (465)
T PLN02871 275 EKNLD 279 (465)
T ss_pred hhhHH
Confidence 76433
No 32
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=96.84 E-value=0.011 Score=54.92 Aligned_cols=175 Identities=16% Similarity=0.121 Sum_probs=97.5
Q ss_pred CCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh-------ch------------hHHH
Q 022363 86 LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-------GQ------------ETIN 146 (298)
Q Consensus 86 ~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k-------~~------------~~i~ 146 (298)
..|+.....+||+.|.+.|++|.+++...+...++. .-...|+.+..-+ .. ..+.
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPV------VEVAPGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLR 92 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCc------cccCCCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 358889999999999999999999995433211111 0011233333210 00 0111
Q ss_pred -----hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeecc---ccccc----c----ccc--c-ccccccccc
Q 022363 147 -----TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR---GHYFK----L----DYV--K-HLPLVAGAM 207 (298)
Q Consensus 147 -----~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r---~~Yf~----l----~~v--k-hLp~v~~~~ 207 (298)
...++|+|.++.... .++..+.+.. . ..|+|.-+|... ..|+. . .+. + .+...-.++
T Consensus 93 ~~~~~~~~~~Diih~h~~~~-~~~~~~~~~~--~-~~p~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~vi 168 (405)
T TIGR03449 93 AEARHEPGYYDLIHSHYWLS-GQVGWLLRDR--W-GVPLVHTAHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADRLI 168 (405)
T ss_pred HHhhccCCCCCeEEechHHH-HHHHHHHHHh--c-CCCEEEeccchHHHHHHhccCCCCCchHHHHHHHHHHHHhcCeEE
Confidence 123799998887443 2222222111 1 128888889753 11110 0 000 0 011122244
Q ss_pred cccHHHHHHHHHhcc-cccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecccChhh
Q 022363 208 IDSHVTAEYWKNRTR-ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSMNFLL 283 (298)
Q Consensus 208 ~~S~AtA~yw~~r~~-~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~sv~~~~ 283 (298)
+.|+..++++...++ ++.+|.+ ++-+.+.+... . ..++..|+++|+++++.+|+.+..+.|.|
T Consensus 169 ~~s~~~~~~~~~~~~~~~~ki~v-----i~ngvd~~~~~----~----~~~~~~~~~~~~~~~~~~i~~~G~l~~~K 232 (405)
T TIGR03449 169 ANTDEEARDLVRHYDADPDRIDV-----VAPGADLERFR----P----GDRATERARLGLPLDTKVVAFVGRIQPLK 232 (405)
T ss_pred ECCHHHHHHHHHHcCCChhhEEE-----ECCCcCHHHcC----C----CcHHHHHHhcCCCCCCcEEEEecCCCccc
Confidence 559999999888776 4444543 66654433222 0 12455678899999999999999998875
No 33
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=96.51 E-value=0.04 Score=51.82 Aligned_cols=40 Identities=28% Similarity=0.174 Sum_probs=32.6
Q ss_pred EEEEEeccCC--CCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 022363 76 LVLLVSHELS--LSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (298)
Q Consensus 76 kILLISHELS--~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (298)
||++|++-.. ..|+.....+|++.|.+.|++|.+++...+
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~ 42 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYG 42 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcCCeeEEEeccCC
Confidence 5788887444 357789999999999999999999996543
No 34
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=96.46 E-value=0.087 Score=46.59 Aligned_cols=131 Identities=9% Similarity=-0.008 Sum_probs=73.9
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceee-h------hchhHH-H-
Q 022363 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS-A------KGQETI-N- 146 (298)
Q Consensus 76 kILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~-~------k~~~~i-~- 146 (298)
||++++...-. |++..+.+++..|.+.|++|.+++..++..... .++....+..+.. . .....+ +
T Consensus 1 ki~~~~~~~~~-~~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (355)
T cd03799 1 KIAYLVKEFPR-LSETFILREILALEAAGHEVEIFSLRPPEDTLV-----HPEDRAELARTRYLARSLALLAQALVLARE 74 (355)
T ss_pred CEEEECCCCCC-cchHHHHHHHHHHHhCCCeEEEEEecCcccccc-----cccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 47888877643 488899999999999999999999554431100 0111111100000 0 000011 1
Q ss_pred -hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc--------cccccccccccccccccHHHHHHH
Q 022363 147 -TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK--------LDYVKHLPLVAGAMIDSHVTAEYW 217 (298)
Q Consensus 147 -~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~--------l~~vkhLp~v~~~~~~S~AtA~yw 217 (298)
...++|+|.+++......+..+.+... ..|+++.+|...-.+.. +.+.+++.++ |+..++++
T Consensus 75 ~~~~~~Dii~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~------s~~~~~~l 145 (355)
T cd03799 75 LRRLGIDHIHAHFGTTPATVAMLASRLG---GIPYSFTAHGKDIFRSPDAIDLDEKLARADFVVAI------SEYNRQQL 145 (355)
T ss_pred HHhcCCCEEEECCCCchHHHHHHHHHhc---CCCEEEEEecccccccCchHHHHHHHhhCCEEEEC------CHHHHHHH
Confidence 136899999987754444433331111 23888888864421111 2333444455 99999999
Q ss_pred HHhc
Q 022363 218 KNRT 221 (298)
Q Consensus 218 ~~r~ 221 (298)
++..
T Consensus 146 ~~~~ 149 (355)
T cd03799 146 IRLL 149 (355)
T ss_pred HHhc
Confidence 9875
No 35
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.46 E-value=0.077 Score=56.08 Aligned_cols=63 Identities=22% Similarity=0.321 Sum_probs=45.6
Q ss_pred CccccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCC------------eEEEEec----cCCCCchhhhhhhHHHHH
Q 022363 67 SPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGT------------KVNWITI----QKPSEEDEVIYSLEHKMW 130 (298)
Q Consensus 67 ~~~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~------------~V~vL~~----~~G~~~g~v~~~L~~kll 130 (298)
.|..++ | +|++|.|.+...||..++++||..|.+.|. +|.+++. ..|+ + ++...+.
T Consensus 276 ~~~~~~-~-rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~--~----~~~~~L~ 347 (694)
T PRK15179 276 GPESFV-G-PVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGA--D----FFAATLA 347 (694)
T ss_pred CCCCCc-c-eEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCc--c----hHHHHHH
Confidence 355555 1 499999999999999999999999999865 3333332 2331 1 3466788
Q ss_pred HcCCcee
Q 022363 131 DRGVQVI 137 (298)
Q Consensus 131 ~rgI~v~ 137 (298)
+.|++|.
T Consensus 348 ~~Gv~v~ 354 (694)
T PRK15179 348 DAGIPVS 354 (694)
T ss_pred hCCCeEE
Confidence 8888887
No 36
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.43 E-value=0.021 Score=46.46 Aligned_cols=86 Identities=20% Similarity=0.187 Sum_probs=60.6
Q ss_pred EEEEeccCC--CCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhccCEE
Q 022363 77 VLLVSHELS--LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLI 154 (298)
Q Consensus 77 ILLISHELS--~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~aDLV 154 (298)
|+++++... ..|+......|++.|++.|++|.++. . +..++ .+.++ ..++|+|
T Consensus 1 i~~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~v~~---~---------~~~~~------------~~~~~-~~~~D~i 55 (229)
T cd01635 1 ILLVSTPLLPGGGGVELVLLDLAKALARRGHEVEVVA---L---------LLLLL------------LRILR-GFKPDVV 55 (229)
T ss_pred CeeeccccCCCCCCchhHHHHHHHHHHHcCCeEEEEE---e---------chHHH------------HHHHh-hcCCCEE
Confidence 567777777 67999999999999999999999998 0 01111 11122 4699999
Q ss_pred EEechhchHHHHHHhhccCCCCCCceEEEeeecccc
Q 022363 155 VLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH 190 (298)
Q Consensus 155 IaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~ 190 (298)
+.++.-...+...+.. .....|++.++|+..-.
T Consensus 56 ~~~~~~~~~~~~~~~~---~~~~~~~i~~~h~~~~~ 88 (229)
T cd01635 56 HAHGYYPAPLALLLAA---RLLGIPLVLTVHGVNRS 88 (229)
T ss_pred EEcCCCcHHHHHHHHH---hhCCCCEEEEEcCccHh
Confidence 9999877766541111 12234999999998743
No 37
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=96.37 E-value=0.029 Score=52.10 Aligned_cols=133 Identities=8% Similarity=0.083 Sum_probs=73.3
Q ss_pred cEEEEEeccCC-CCCchHHHHHHHHHHHhC--CCeEEEEeccCCCCchhhhhhhHHHHH----HcCCcee--e-hhchhH
Q 022363 75 KLVLLVSHELS-LSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMW----DRGVQVI--S-AKGQET 144 (298)
Q Consensus 75 KkILLISHELS-~TGAPLlLleLA~~Lkq~--G~~V~vL~~~~G~~~g~v~~~L~~kll----~rgI~v~--~-~k~~~~ 144 (298)
.||+++++-.+ ..|+.-.++++++.|.+. |+++.+++..++...... +.+. ...+++. . ......
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAWL-----KEIKYAQSFSNIKLSFLRRAKHVYN 75 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHHH-----HhcchhcccccchhhhhcccHHHHH
Confidence 37888887664 478889999999999999 899998885543211111 1110 0001110 0 001111
Q ss_pred HH---hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeecc---ccccc--cccccccccccccccccHHHHHH
Q 022363 145 IN---TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR---GHYFK--LDYVKHLPLVAGAMIDSHVTAEY 216 (298)
Q Consensus 145 i~---~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r---~~Yf~--l~~vkhLp~v~~~~~~S~AtA~y 216 (298)
+. ...++|+|++++..+..|...+. ... ....++++|.|=.. ..|.. +.+.+.+..+ |+.+.++
T Consensus 76 l~~~l~~~~~Dii~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~h~~~~~~~~~~~~~~~~~d~~i~~------S~~~~~~ 147 (359)
T PRK09922 76 FSKWLKETQPDIVICIDVISCLYANKAR-KKS-GKQFKIFSWPHFSLDHKKHAECKKITCADYHLAI------SSGIKEQ 147 (359)
T ss_pred HHHHHHhcCCCEEEEcCHHHHHHHHHHH-HHh-CCCCeEEEEecCcccccchhhhhhhhcCCEEEEc------CHHHHHH
Confidence 11 35689999999876554333222 211 11126788888322 11111 2233334444 9999998
Q ss_pred HHHh
Q 022363 217 WKNR 220 (298)
Q Consensus 217 w~~r 220 (298)
.++.
T Consensus 148 ~~~~ 151 (359)
T PRK09922 148 MMAR 151 (359)
T ss_pred HHHc
Confidence 8754
No 38
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=96.20 E-value=0.061 Score=51.60 Aligned_cols=37 Identities=27% Similarity=0.241 Sum_probs=31.4
Q ss_pred EEEEEeccCCC---C-CchHHHHHHHHHHHhCCCeEEEEec
Q 022363 76 LVLLVSHELSL---S-GGPLLLMELAFLLRGVGTKVNWITI 112 (298)
Q Consensus 76 kILLISHELS~---T-GAPLlLleLA~~Lkq~G~~V~vL~~ 112 (298)
+||+||=|..- + |---+.-+|++.|.+.|++|.+++-
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p 41 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMP 41 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEec
Confidence 58999988543 4 7778889999999999999999993
No 39
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=95.99 E-value=0.18 Score=47.02 Aligned_cols=175 Identities=12% Similarity=0.055 Sum_probs=89.8
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCc---hhhhhhhHHHHHHc----------CCceee-
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEE---DEVIYSLEHKMWDR----------GVQVIS- 138 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~---g~v~~~L~~kll~r----------gI~v~~- 138 (298)
+-|+||++|-.. ..|-.-....|+..|++.|++++++...-.... +.+......+..+. +-..+.
T Consensus 3 ~~~rili~t~~~-G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 81 (380)
T PRK13609 3 KNPKVLILTAHY-GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITEITKYLYLKSYTIGKELYRLFYYGVEKIYD 81 (380)
T ss_pred CCCeEEEEEcCC-CchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccc
Confidence 457899999776 558889999999999999999888773332111 11111111111110 111000
Q ss_pred h--------hchhHHH---hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc-ccccccccccccc
Q 022363 139 A--------KGQETIN---TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-LDYVKHLPLVAGA 206 (298)
Q Consensus 139 ~--------k~~~~i~---~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~-l~~vkhLp~v~~~ 206 (298)
. .+...+. ...++|+|+.-.-. ..+..+.+.+ .... |++.++++-..++.- ..+++++..+
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~--~~~~~~~~~~-~~~i-p~~~~~td~~~~~~~~~~~ad~i~~~--- 154 (380)
T PRK13609 82 KKIFSWYANFGRKRLKLLLQAEKPDIVINTFPI--IAVPELKKQT-GISI-PTYNVLTDFCLHKIWVHREVDRYFVA--- 154 (380)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCcCEEEEcChH--HHHHHHHHhc-CCCC-CeEEEeCCCCCCcccccCCCCEEEEC---
Confidence 0 0011111 24589999984332 1233332221 1122 888888764322211 2355556666
Q ss_pred ccccHHHHHHHHHhcccccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCE
Q 022363 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDL 271 (298)
Q Consensus 207 ~~~S~AtA~yw~~r~~~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddv 271 (298)
|+...+++.+.--++.+|.. +.....+.... . ..++..|+++|++++.-
T Consensus 155 ---s~~~~~~l~~~gi~~~ki~v-----~G~p~~~~f~~----~----~~~~~~~~~~~l~~~~~ 203 (380)
T PRK13609 155 ---TDHVKKVLVDIGVPPEQVVE-----TGIPIRSSFEL----K----INPDIIYNKYQLCPNKK 203 (380)
T ss_pred ---CHHHHHHHHHcCCChhHEEE-----ECcccChHHcC----c----CCHHHHHHHcCCCCCCc
Confidence 99999988764224334432 32222222211 0 11334688999998763
No 40
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=95.98 E-value=0.1 Score=41.45 Aligned_cols=97 Identities=22% Similarity=0.218 Sum_probs=60.2
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh--------chh--HH
Q 022363 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--------GQE--TI 145 (298)
Q Consensus 76 kILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k--------~~~--~i 145 (298)
|||+|+...+ ...+++++.|++.|++|++++.+++. ++.....|+.+..-+ ..+ ++
T Consensus 1 KIl~i~~~~~-----~~~~~~~~~L~~~g~~V~ii~~~~~~---------~~~~~~~~i~~~~~~~~~k~~~~~~~~~~l 66 (139)
T PF13477_consen 1 KILLIGNTPS-----TFIYNLAKELKKRGYDVHIITPRNDY---------EKYEIIEGIKVIRLPSPRKSPLNYIKYFRL 66 (139)
T ss_pred CEEEEecCcH-----HHHHHHHHHHHHCCCEEEEEEcCCCc---------hhhhHhCCeEEEEecCCCCccHHHHHHHHH
Confidence 5888887764 37889999999999999999974431 112223344333221 111 11
Q ss_pred -H--hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeecc
Q 022363 146 -N--TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR 188 (298)
Q Consensus 146 -~--~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r 188 (298)
+ ...++|+|.+++....-.+..+.+- + ....|+|+.+|+..
T Consensus 67 ~k~ik~~~~DvIh~h~~~~~~~~~~l~~~-~-~~~~~~i~~~hg~~ 110 (139)
T PF13477_consen 67 RKIIKKEKPDVIHCHTPSPYGLFAMLAKK-L-LKNKKVIYTVHGSD 110 (139)
T ss_pred HHHhccCCCCEEEEecCChHHHHHHHHHH-H-cCCCCEEEEecCCe
Confidence 1 2458999999998654444444311 1 12249999999863
No 41
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=95.92 E-value=0.14 Score=48.50 Aligned_cols=162 Identities=14% Similarity=0.183 Sum_probs=94.1
Q ss_pred CCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--e---e--------------hhchhHH-
Q 022363 86 LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--I---S--------------AKGQETI- 145 (298)
Q Consensus 86 ~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v--~---~--------------~k~~~~i- 145 (298)
-.|+..-+.+++++|.. +|.|++.+.++..+ .+...-|+.+ + . -.+...+
T Consensus 20 ~g~ve~~~~~~~~~l~~---~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (380)
T PRK15484 20 AAAVETWIYQVAKRTSI---PNRIACIKNPGYPE-------YTKVNDNCDIHYIGFSRIYKRLFQKWTRLDPLPYSQRIL 89 (380)
T ss_pred ccHHHHHHHHhhhhccC---CeeEEEecCCCCCc-------hhhccCCCceEEEEeccccchhhhhhhccCchhHHHHHH
Confidence 45899999999999954 99999977653111 1111111111 1 1 0111111
Q ss_pred Hh-----hhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccccccccccccccccccccHHHHHHHHHh
Q 022363 146 NT-----ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNR 220 (298)
Q Consensus 146 ~~-----A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~l~~vkhLp~v~~~~~~S~AtA~yw~~r 220 (298)
.. ..++|+|.+++.. .++..+. ...| ..|++.++|+....+. +++..+++.+ |+.+++++...
T Consensus 90 ~~~~~~~~~~~~vi~v~~~~--~~~~~~~-~~~~--~~~~v~~~h~~~~~~~-~~~~~~ii~~------S~~~~~~~~~~ 157 (380)
T PRK15484 90 NIAHKFTITKDSVIVIHNSM--KLYRQIR-ERAP--QAKLVMHMHNAFEPEL-LDKNAKIIVP------SQFLKKFYEER 157 (380)
T ss_pred HHHHhcCCCCCcEEEEeCcH--HhHHHHH-hhCC--CCCEEEEEecccChhH-hccCCEEEEc------CHHHHHHHHhh
Confidence 11 2458999988743 3444443 2221 2388899998531111 3445566666 99999998876
Q ss_pred cccccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecccChhh
Q 022363 221 TRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSMNFLL 283 (298)
Q Consensus 221 ~~~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~sv~~~~ 283 (298)
..+ .+|. |++-+...+... . ..++..|+.+|+++++.+|..+..++|.|
T Consensus 158 ~~~-~~i~-----vIpngvd~~~~~----~----~~~~~~~~~~~~~~~~~~il~~Grl~~~K 206 (380)
T PRK15484 158 LPN-ADIS-----IVPNGFCLETYQ----S----NPQPNLRQQLNISPDETVLLYAGRISPDK 206 (380)
T ss_pred CCC-CCEE-----EecCCCCHHHcC----C----cchHHHHHHhCCCCCCeEEEEeccCcccc
Confidence 533 3443 366554433221 0 12345677899998998888888888864
No 42
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=95.88 E-value=0.12 Score=47.61 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=31.9
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccC
Q 022363 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (298)
Q Consensus 75 KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~ 114 (298)
+||++++.+.+ |+=..+++|++.|++.|++|.+++..+
T Consensus 2 ~~i~i~~~g~g--G~~~~~~~la~~L~~~g~ev~vv~~~~ 39 (357)
T PRK00726 2 KKILLAGGGTG--GHVFPALALAEELKKRGWEVLYLGTAR 39 (357)
T ss_pred cEEEEEcCcch--HhhhHHHHHHHHHHhCCCEEEEEECCC
Confidence 57888887654 777788999999999999999999644
No 43
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.76 E-value=0.3 Score=44.30 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=25.0
Q ss_pred CCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 022363 85 SLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (298)
Q Consensus 85 S~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (298)
+..|+=..+.++++.|.+.|++|.++++..+
T Consensus 8 ~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~ 38 (350)
T cd03785 8 GTGGHIFPALALAEELRERGAEVLFLGTKRG 38 (350)
T ss_pred CchhhhhHHHHHHHHHHhCCCEEEEEECCCc
Confidence 3346666778999999999999999986544
No 44
>PRK00654 glgA glycogen synthase; Provisional
Probab=95.76 E-value=0.27 Score=48.08 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=31.3
Q ss_pred EEEEEeccCC----CCCchHHHHHHHHHHHhCCCeEEEEecc
Q 022363 76 LVLLVSHELS----LSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (298)
Q Consensus 76 kILLISHELS----~TGAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (298)
+|++||=|.. ..|-=-+..+|++.|.+.|++|.+++-.
T Consensus 2 ~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~ 43 (466)
T PRK00654 2 KILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPG 43 (466)
T ss_pred eEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 6999998843 2366678999999999999999999843
No 45
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=95.57 E-value=0.29 Score=47.15 Aligned_cols=134 Identities=13% Similarity=0.071 Sum_probs=76.0
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchh---------
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE--------- 143 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~--------- 143 (298)
|-|+|..++- .+-|+-.=+.++|+.|.+.|++|.+++..++. +.++.....|+.+..-....
T Consensus 2 ~~~~~~~~~~--~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 72 (415)
T cd03816 2 KRKRVCVLVL--GDIGRSPRMQYHALSLAKHGWKVDLVGYLETP-------PHDEILSNPNITIHPLPPPPQRLNKLPFL 72 (415)
T ss_pred CccEEEEEEe--cccCCCHHHHHHHHHHHhcCceEEEEEecCCC-------CCHHHhcCCCEEEEECCCCccccccchHH
Confidence 3466666664 22344344588999999999999999955432 11222445577666432110
Q ss_pred ------HH----H------hhhccCEEEEec------hhchHHHHHHhhccCCCCCCceEEEeeeccccc----------
Q 022363 144 ------TI----N------TALKADLIVLNT------AVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---------- 191 (298)
Q Consensus 144 ------~i----~------~A~~aDLVIaNT------~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Y---------- 191 (298)
.+ . ...++|+|++.+ +..+.+...+ .+ .|+|-.+|+....+
T Consensus 73 ~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~--~~-----~~~V~~~h~~~~~~~~~~~~~~~~ 145 (415)
T cd03816 73 LFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLL--RR-----TKLIIDWHNYGYTILALKLGENHP 145 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHH--hC-----CeEEEEcCCchHHHHhcccCCCCH
Confidence 00 0 124799999854 2223333322 12 27888888852100
Q ss_pred c----c------cccccccccccccccccHHHHHHHHHhcc-ccccccc
Q 022363 192 F----K------LDYVKHLPLVAGAMIDSHVTAEYWKNRTR-ERLRIKM 229 (298)
Q Consensus 192 f----~------l~~vkhLp~v~~~~~~S~AtA~yw~~r~~-~~~~Ikl 229 (298)
+ . .++.++++++ |+.++++..+ .+ ++.+|.+
T Consensus 146 ~~~~~~~~e~~~~~~ad~ii~v------S~~~~~~l~~-~~~~~~ki~v 187 (415)
T cd03816 146 LVRLAKWYEKLFGRLADYNLCV------TKAMKEDLQQ-FNNWKIRATV 187 (415)
T ss_pred HHHHHHHHHHHHhhcCCEeeec------CHHHHHHHHh-hhccCCCeee
Confidence 0 0 2345667777 9999999976 44 5455554
No 46
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=95.05 E-value=0.14 Score=47.98 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=27.6
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC
Q 022363 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (298)
Q Consensus 76 kILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~ 116 (298)
+||||...+- +| .-+||+.|.+.|++|++++.++..
T Consensus 1 ~il~~~~~~p---~~--~~~la~~L~~~G~~v~~~~~~~~~ 36 (396)
T cd03818 1 RILFVHQNFP---GQ--FRHLAPALAAQGHEVVFLTEPNAA 36 (396)
T ss_pred CEEEECCCCc---hh--HHHHHHHHHHCCCEEEEEecCCCC
Confidence 4777776654 23 568999999999999999966653
No 47
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=94.36 E-value=0.95 Score=44.10 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=30.9
Q ss_pred EEEEEeccCCC---C-CchHHHHHHHHHHHhCCCeEEEEecc
Q 022363 76 LVLLVSHELSL---S-GGPLLLMELAFLLRGVGTKVNWITIQ 113 (298)
Q Consensus 76 kILLISHELS~---T-GAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (298)
+|++||=|..- + |-=-++-+|++.|.+.|++|.+++-+
T Consensus 2 ~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~ 43 (473)
T TIGR02095 2 RVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPA 43 (473)
T ss_pred eEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 69999999433 3 55567889999999999999999843
No 48
>PRK14099 glycogen synthase; Provisional
Probab=94.03 E-value=0.91 Score=45.46 Aligned_cols=40 Identities=25% Similarity=0.214 Sum_probs=32.4
Q ss_pred ccccEEEEEeccCC---CC-CchHHHHHHHHHHHhCCCeEEEEe
Q 022363 72 MKSKLVLLVSHELS---LS-GGPLLLMELAFLLRGVGTKVNWIT 111 (298)
Q Consensus 72 ~~~KkILLISHELS---~T-GAPLlLleLA~~Lkq~G~~V~vL~ 111 (298)
|++.+||+||=|.. -| |===++-.|.+.|++.|++|.++.
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~ 44 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLV 44 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEe
Confidence 67899999999973 33 333478889999999999998877
No 49
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=93.85 E-value=0.96 Score=41.00 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=27.9
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccC
Q 022363 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (298)
Q Consensus 76 kILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~ 114 (298)
||+++.=+.+ |.=....+||+.|++.|++|.++++.+
T Consensus 2 ~i~~~~g~~~--g~~~~~~~La~~L~~~g~eV~vv~~~~ 38 (348)
T TIGR01133 2 KVVLAAGGTG--GHIFPALAVAEELIKRGVEVLWLGTKR 38 (348)
T ss_pred eEEEEeCccH--HHHhHHHHHHHHHHhCCCEEEEEeCCC
Confidence 5777765554 443366799999999999999998543
No 50
>PRK10125 putative glycosyl transferase; Provisional
Probab=93.27 E-value=0.75 Score=44.76 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=38.1
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC
Q 022363 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (298)
Q Consensus 75 KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~ 116 (298)
.|||.|.=-++..||=-++++|+..|.+.|++|.++.+++..
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~ 42 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKG 42 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecCCC
Confidence 379999999999999999999999999999999999976553
No 51
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=92.12 E-value=0.51 Score=44.47 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=29.7
Q ss_pred EEEEeccCCC---CCchHHHHHHHHHHHhCCCeEEEEecc
Q 022363 77 VLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQ 113 (298)
Q Consensus 77 ILLISHELS~---TGAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (298)
||++||..=. .|+++-.+++++.|.+ .++|.+++-.
T Consensus 1 iL~~~~~~P~P~~~G~~~r~~~~~~~L~~-~~~v~l~~~~ 39 (397)
T TIGR03087 1 ILYLVHRIPYPPNKGDKIRSFHLLRHLAA-RHRVHLGTFV 39 (397)
T ss_pred CeeecCCCCCCCCCCCcEeHHHHHHHHHh-cCcEEEEEeC
Confidence 5788887644 4999999999999977 5899999944
No 52
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=91.44 E-value=2.4 Score=41.13 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=24.2
Q ss_pred CCCchHHHHHHHHHHHhCCC--eEEEEecc
Q 022363 86 LSGGPLLLMELAFLLRGVGT--KVNWITIQ 113 (298)
Q Consensus 86 ~TGAPLlLleLA~~Lkq~G~--~V~vL~~~ 113 (298)
..|+..-+.+|++.|.+.|+ +|.+++..
T Consensus 25 ~GG~~~~v~~La~~L~~~G~~~~V~v~t~~ 54 (439)
T TIGR02472 25 TGGQTKYVLELARALARRSEVEQVDLVTRL 54 (439)
T ss_pred CCCcchHHHHHHHHHHhCCCCcEEEEEecc
Confidence 35888899999999999997 99999953
No 53
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=91.35 E-value=1.2 Score=43.41 Aligned_cols=101 Identities=17% Similarity=0.186 Sum_probs=63.7
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH--
Q 022363 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-- 146 (298)
Q Consensus 69 ~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~-- 146 (298)
....+||+|.+.. .|-....+++.|.+.|.+|+.+....+. .+......+. +..++.+.++.....+.
T Consensus 271 ~~~l~Gkrv~i~g-------~~~~~~~la~~L~elGm~vv~~~t~~~~--~~~~~~~~~~-l~~~~~v~~~~d~~~l~~~ 340 (396)
T cd01979 271 LDLLRGKSIFFMG-------DNLLEIPLARFLTRCGMIVVEVGTPYLD--KRFQAAELEL-LPPMVRIVEKPDNYRQLDR 340 (396)
T ss_pred HHhhcCCEEEEEC-------CchHHHHHHHHHHHCCCEEEeeCCCcCC--hHHHHHHHHh-cCCCCeEEECCCHHHHHHH
Confidence 3456899997754 4568899999999999999988644321 1111111222 22467777654443332
Q ss_pred -hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeecc
Q 022363 147 -TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR 188 (298)
Q Consensus 147 -~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r 188 (298)
...++|++|.|.-.+.+ +.+..| |+.|.+.-.+
T Consensus 341 i~~~~pDlli~~~~~a~p----l~r~G~-----P~~dr~~~~~ 374 (396)
T cd01979 341 IRELRPDLVVTGLGLANP----LEARGI-----TTKWSIEFTF 374 (396)
T ss_pred HHhcCCCEEEecccccCc----HHhCCC-----cceeecceee
Confidence 35699999999554432 223444 9999986655
No 54
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=91.29 E-value=1.1 Score=44.06 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=54.9
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH--
Q 022363 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-- 146 (298)
Q Consensus 69 ~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~-- 146 (298)
..+.+||++.+.. .|-....+++.|.+.|.+++......+. .+......+.+ ..+..+..+.....+.
T Consensus 269 ~~~l~Gkrv~i~g-------d~~~~~~l~~~L~elGm~~v~~~t~~~~--~~~~~~~~~~l-~~~~~v~~~~d~~~l~~~ 338 (407)
T TIGR01279 269 TQLLRGKKIFFFG-------DNLLELPLARFLKRCGMEVVECGTPYIH--RRFHAAELALL-EGGVRIVEQPDFHRQLQR 338 (407)
T ss_pred HHhcCCCEEEEEC-------CchHHHHHHHHHHHCCCEEEEecCCCCC--hHHHHHHHhhc-CCCCeEEeCCCHHHHHHH
Confidence 4467899988864 4678999999999999999888754442 11111112222 2256776664444332
Q ss_pred -hhhccCEEEEechhchH
Q 022363 147 -TALKADLIVLNTAVAGK 163 (298)
Q Consensus 147 -~A~~aDLVIaNT~v~g~ 163 (298)
...++||+|.|+....+
T Consensus 339 i~~~~pDllig~~~~~~p 356 (407)
T TIGR01279 339 IRATRPDLVVTGLGTANP 356 (407)
T ss_pred HHhcCCCEEecCccCCCc
Confidence 35699999999954333
No 55
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=91.05 E-value=3.4 Score=37.20 Aligned_cols=128 Identities=11% Similarity=-0.012 Sum_probs=67.5
Q ss_pred EeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee-----------------ehhch
Q 022363 80 VSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI-----------------SAKGQ 142 (298)
Q Consensus 80 ISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~-----------------~~k~~ 142 (298)
+-.+....+....+.+++..|. |+++++++++.++..... ....++..+ ..+..
T Consensus 4 ~~~~~~~~~~e~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (367)
T cd05844 4 IFRPLLLAPSETFVRNQAEALR--RFRPVYVGGRRLGPAPLG-------ALAVRLADLAGGKAGLRLGALRLLTGSAPQL 74 (367)
T ss_pred EEeCCCCCCchHHHHHHHHhcc--cCCcEEEEeeccCCCCCc-------ccceeeeecccchhHHHHHHHHhccccccHH
Confidence 3345555568889999999995 778888886554321100 000111111 11111
Q ss_pred hHHHhhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc---c---------cccccccccccccccc
Q 022363 143 ETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK---L---------DYVKHLPLVAGAMIDS 210 (298)
Q Consensus 143 ~~i~~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~---l---------~~vkhLp~v~~~~~~S 210 (298)
..+-...++|+|.++....+.+.-.+.+.. ..|+++++|+..-.+.. . .+..-+.....++..|
T Consensus 75 ~~~~~~~~~dvvh~~~~~~~~~~~~~~~~~----~~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 150 (367)
T cd05844 75 RRLLRRHRPDLVHAHFGFDGVYALPLARRL----GVPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALFIAVS 150 (367)
T ss_pred HHHHHhhCCCEEEeccCchHHHHHHHHHHc----CCCEEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEEEECC
Confidence 111125689999998655444444333221 22999999975422111 0 0000011223345559
Q ss_pred HHHHHHHHHh
Q 022363 211 HVTAEYWKNR 220 (298)
Q Consensus 211 ~AtA~yw~~r 220 (298)
+.+.++.++.
T Consensus 151 ~~~~~~~~~~ 160 (367)
T cd05844 151 QFIRDRLLAL 160 (367)
T ss_pred HHHHHHHHHc
Confidence 9999998865
No 56
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=90.68 E-value=0.97 Score=46.02 Aligned_cols=82 Identities=21% Similarity=0.188 Sum_probs=52.7
Q ss_pred ccccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhh---hhHHHHH-Hc---CCceeehh
Q 022363 68 PLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY---SLEHKMW-DR---GVQVISAK 140 (298)
Q Consensus 68 ~~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~---~L~~kll-~r---gI~v~~~k 140 (298)
-..+.+||++. .+|.|-....|++.|.++|.+++.+....+. .+... .+.+++. +. +..++++.
T Consensus 308 ~~~~L~GKrva-------i~Gdp~~~i~LarfL~elGmevV~vgt~~~~--~~~~~~d~~~l~~~~~~~~~~~~vive~~ 378 (457)
T CHL00073 308 YLDLVRGKSVF-------FMGDNLLEISLARFLIRCGMIVYEIGIPYMD--KRYQAAELALLEDTCRKMNVPMPRIVEKP 378 (457)
T ss_pred HHHHHCCCEEE-------EECCCcHHHHHHHHHHHCCCEEEEEEeCCCC--hhhhHHHHHHHHHHhhhcCCCCcEEEeCC
Confidence 44578999995 4588889999999999999999998866542 22111 1222222 22 33345543
Q ss_pred chhHHH---hhhccCEEEEec
Q 022363 141 GQETIN---TALKADLIVLNT 158 (298)
Q Consensus 141 ~~~~i~---~A~~aDLVIaNT 158 (298)
....+. ...++||+|.|.
T Consensus 379 D~~el~~~i~~~~pDLlIgG~ 399 (457)
T CHL00073 379 DNYNQIQRIRELQPDLAITGM 399 (457)
T ss_pred CHHHHHHHHhhCCCCEEEccc
Confidence 333322 356999999994
No 57
>PLN02316 synthase/transferase
Probab=90.23 E-value=5.7 Score=44.52 Aligned_cols=197 Identities=14% Similarity=0.147 Sum_probs=107.2
Q ss_pred cEEEEEeccCCC---C-CchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHH--HH--HH----------cCCce
Q 022363 75 KLVLLVSHELSL---S-GGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEH--KM--WD----------RGVQV 136 (298)
Q Consensus 75 KkILLISHELS~---T-GAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~--kl--l~----------rgI~v 136 (298)
.+||+||=|..- + |-=-+.-+|++.|.+.|++|.+++-.-+.........+.. .+ -. .|+++
T Consensus 588 M~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~GV~v 667 (1036)
T PLN02316 588 MHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWFGKVEGLSV 667 (1036)
T ss_pred cEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEEEEECCcEE
Confidence 689999999754 4 3345688999999999999999994322100000000000 00 00 13443
Q ss_pred eeh-h----------c-----hhHH--------Hhh----hccCEEEEe---chhchHHHHHHhhccCCCCCCceEEEee
Q 022363 137 ISA-K----------G-----QETI--------NTA----LKADLIVLN---TAVAGKWLDAVLKEDVPRVLPNVLWWIH 185 (298)
Q Consensus 137 ~~~-k----------~-----~~~i--------~~A----~~aDLVIaN---T~v~g~wl~~l~~~~~p~~~~pVIWWIH 185 (298)
+.- . | .+.| ..+ .++|+|-+| |+..+-++.+..+.. +....|+|-=||
T Consensus 668 yfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talva~llk~~~~~~-~~~~~p~V~TiH 746 (1036)
T PLN02316 668 YFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAWLFKDHYAHY-GLSKARVVFTIH 746 (1036)
T ss_pred EEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHHhhhhh-ccCCCCEEEEeC
Confidence 311 0 0 0111 111 278999999 555555555432111 122348888899
Q ss_pred ecc--ccccc--cccccccccccccccccHHHHHHHHHhcc--c-ccccccCCceEEEecCcHHHH-----------HHH
Q 022363 186 EMR--GHYFK--LDYVKHLPLVAGAMIDSHVTAEYWKNRTR--E-RLRIKMPDTYVVHLGNSKELM-----------EVA 247 (298)
Q Consensus 186 E~r--~~Yf~--l~~vkhLp~v~~~~~~S~AtA~yw~~r~~--~-~~~Ikl~~~~vv~L~~s~~L~-----------~~a 247 (298)
-.. +.+.. +.+...+.+| |++.++.-.+... . ..+| ++++=|...+.- ..+
T Consensus 747 nl~~~~n~lk~~l~~AD~ViTV------S~tya~EI~~~~~l~~~~~Kl-----~vI~NGID~~~w~P~tD~~lp~~y~~ 815 (1036)
T PLN02316 747 NLEFGANHIGKAMAYADKATTV------SPTYSREVSGNSAIAPHLYKF-----HGILNGIDPDIWDPYNDNFIPVPYTS 815 (1036)
T ss_pred CcccchhHHHHHHHHCCEEEeC------CHHHHHHHHhccCcccccCCE-----EEEECCccccccCCcccccccccCCc
Confidence 654 11111 4556778888 9999887765322 1 1222 335444332210 001
Q ss_pred HH-HHHHHHhhHHHHHHhCCCC-CCEEEEEecccChhh
Q 022363 248 ED-NVAKRVLREHVRESLGVRN-EDLLFAIINSMNFLL 283 (298)
Q Consensus 248 ~~-~va~~~lre~VR~~lGl~~-ddvlv~~~~sv~~~~ 283 (298)
++ ...++.-++.+|+++|+++ +..+|+.+.-+.+.|
T Consensus 816 ~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qK 853 (1036)
T PLN02316 816 ENVVEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQK 853 (1036)
T ss_pred hhhhhhhhhhHHHHHHHhCCCcccCeEEEEEecccccc
Confidence 11 1223335667889999995 678999999888854
No 58
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=89.57 E-value=2.1 Score=42.36 Aligned_cols=102 Identities=19% Similarity=0.236 Sum_probs=62.3
Q ss_pred ccccccccEEEEEeccCCCCCchHHHHHHHHHHHh-CCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH
Q 022363 68 PLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRG-VGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN 146 (298)
Q Consensus 68 ~~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq-~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~ 146 (298)
-..+.+||++.+. |.|-....+++.|.+ .|.+++.+....+. .+....-.+.+ ..++.+..+.....+.
T Consensus 284 ~~~~l~Gkrvai~-------g~~~~~~~la~~L~eelGm~~v~v~t~~~~--~~~~~~~~~~l-~~~~~v~~~~D~~~l~ 353 (427)
T PRK02842 284 YRELLRGKRVFFL-------PDSQLEIPLARFLSRECGMELVEVGTPYLN--RRFLAAELALL-PDGVRIVEGQDVERQL 353 (427)
T ss_pred hhhhcCCcEEEEE-------CCchhHHHHHHHHHHhCCCEEEEeCCCCCC--HHHHHHHHHhc-cCCCEEEECCCHHHHH
Confidence 3456799999775 455678899999998 99999888854432 11100111222 2377777664443332
Q ss_pred ---hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeecc
Q 022363 147 ---TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR 188 (298)
Q Consensus 147 ---~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r 188 (298)
...++|++|.|+-.+.+.++ ..| |+.|-++-.+
T Consensus 354 ~~i~~~~pDllig~~~~~~pl~r----~Gf-----P~~dr~~~~~ 389 (427)
T PRK02842 354 DRIRALRPDLVVCGLGLANPLEA----EGI-----TTKWSIEFVF 389 (427)
T ss_pred HHHHHcCCCEEEccCccCCchhh----cCC-----ceeEEEeeee
Confidence 34699999999844433222 333 7777665433
No 59
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.42 E-value=1.9 Score=42.98 Aligned_cols=86 Identities=13% Similarity=0.197 Sum_probs=53.1
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc--CCceeehhchhHHHhhh
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR--GVQVISAKGQETINTAL 149 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~r--gI~v~~~k~~~~i~~A~ 149 (298)
+++|+|+++. ++.+| |.+|++|++.|++|...=.+.- . +..+++.+. |+++....+... ...
T Consensus 5 ~~~~~i~v~G--~G~sG-----~s~a~~L~~~G~~v~~~D~~~~---~----~~~~~L~~~~~~~~~~~g~~~~~--~~~ 68 (498)
T PRK02006 5 LQGPMVLVLG--LGESG-----LAMARWCARHGARLRVADTREA---P----PNLAALRAELPDAEFVGGPFDPA--LLD 68 (498)
T ss_pred cCCCEEEEEe--ecHhH-----HHHHHHHHHCCCEEEEEcCCCC---c----hhHHHHHhhcCCcEEEeCCCchh--Hhc
Confidence 4588999998 67777 3489999999999865322211 1 123345455 455544322221 235
Q ss_pred ccCEEEEechhch------HHHHHHhhccC
Q 022363 150 KADLIVLNTAVAG------KWLDAVLKEDV 173 (298)
Q Consensus 150 ~aDLVIaNT~v~g------~wl~~l~~~~~ 173 (298)
++|+||....+.- +.+.+..+.+.
T Consensus 69 ~~d~vv~sp~I~~~~~~~~~~~~~a~~~~i 98 (498)
T PRK02006 69 GVDLVALSPGLSPLEAALAPLVAAARERGI 98 (498)
T ss_pred CCCEEEECCCCCCcccccCHHHHHHHHCCC
Confidence 8999999988754 66666654454
No 60
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=89.27 E-value=1.5 Score=39.98 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=21.9
Q ss_pred EEEEeccCC--CCCchHHHHHHHHHHHhCCCeEE
Q 022363 77 VLLVSHELS--LSGGPLLLMELAFLLRGVGTKVN 108 (298)
Q Consensus 77 ILLISHELS--~TGAPLlLleLA~~Lkq~G~~V~ 108 (298)
|. |.|+.. ..||--++.+|++.|.+.+..+.
T Consensus 2 i~-~~~~~~~~~GG~E~~~~~l~~~l~~~~v~~~ 34 (351)
T cd03804 2 VA-IVHDWLVNIGGGEKVVEALARLFPDADIFTL 34 (351)
T ss_pred EE-EEEeccccCCCHHHHHHHHHHhCCCCCEEEE
Confidence 44 444443 46999999999999987554444
No 61
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=88.56 E-value=2.7 Score=41.38 Aligned_cols=86 Identities=22% Similarity=0.309 Sum_probs=56.6
Q ss_pred ccccccEEEEEeccCCCCCchHHHHH-HHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhh
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLME-LAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTA 148 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLle-LA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A 148 (298)
++.++|+|++|+ ++.+| |. +|++|++.|++|.+.=.+ .. ...+++.+.|+++....... ..
T Consensus 3 ~~~~~~~v~viG--~G~sG-----~s~~a~~L~~~G~~V~~~D~~-~~-------~~~~~l~~~gi~~~~~~~~~---~~ 64 (461)
T PRK00421 3 ELRRIKRIHFVG--IGGIG-----MSGLAEVLLNLGYKVSGSDLK-ES-------AVTQRLLELGAIIFIGHDAE---NI 64 (461)
T ss_pred CcCCCCEEEEEE--Echhh-----HHHHHHHHHhCCCeEEEECCC-CC-------hHHHHHHHCCCEEeCCCCHH---HC
Confidence 567888999986 44455 66 799999999998653322 11 12345777799887632222 23
Q ss_pred hccCEEEEechhc--hHHHHHHhhccC
Q 022363 149 LKADLIVLNTAVA--GKWLDAVLKEDV 173 (298)
Q Consensus 149 ~~aDLVIaNT~v~--g~wl~~l~~~~~ 173 (298)
.++|+||....+. .+++....+.+.
T Consensus 65 ~~~d~vv~spgi~~~~~~~~~a~~~~i 91 (461)
T PRK00421 65 KDADVVVYSSAIPDDNPELVAARELGI 91 (461)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 5899999999886 346666654444
No 62
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=86.31 E-value=6.4 Score=37.05 Aligned_cols=172 Identities=16% Similarity=0.244 Sum_probs=93.7
Q ss_pred ccccEEEEEeccCC-CCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhc
Q 022363 72 MKSKLVLLVSHELS-LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (298)
Q Consensus 72 ~~~KkILLISHELS-~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~ 150 (298)
.+.|+|+|.|..-+ .+|.|..|.+.+. =...+.+++|++.++- .+....|..++.-...+.+.....
T Consensus 11 ~~~~~Ivf~~~~g~~~~dN~~~l~~~l~-~~~~~~~~~~~~~~~~-----------~~~~~~~~~~v~~~s~~~~~~~~~ 78 (369)
T PF04464_consen 11 KKKKKIVFESESGNKFSDNPKALFEYLI-KNYPDYKIYWIINKKS-----------PELKPKGIKVVKFGSLKHIYYLAR 78 (369)
T ss_dssp -EEEEEEEEBTTTTBS-HHHHHHHHHHH-HH-TTSEEEEEESSGG-----------G----SS-EEEETTSHHHHHHHHH
T ss_pred ccCCEEEEEECCCCCCCCCHHHHHHHHH-hhCCCcEEEEEEcCch-----------HhhccCCceEEeecHHHHHHHHHh
Confidence 57889999998544 4588999998766 2345889999995542 156666888887767777778889
Q ss_pred cCEEEEechhchH-HHHHHhhccCCCCCCceEEEeeeccccccccc----------cccccccccccccccHHHHHHHHH
Q 022363 151 ADLIVLNTAVAGK-WLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLD----------YVKHLPLVAGAMIDSHVTAEYWKN 219 (298)
Q Consensus 151 aDLVIaNT~v~g~-wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~l~----------~vkhLp~v~~~~~~S~AtA~yw~~ 219 (298)
++.+|.|+....- +.. .....++|.-=|-.--.-+.++ ..+.....-.+...|+...+.+++
T Consensus 79 Ak~~i~~~~~~~~~~~~-------~~~~~~~i~lwHG~~~K~~g~~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~ 151 (369)
T PF04464_consen 79 AKYIISDSYFPDLIYFK-------KRKNQKYIQLWHGIPLKKIGYDSPDNKNYRKNYKRNYRNYDYFIVSSEFEKEIFKK 151 (369)
T ss_dssp EEEEEESS---T--TS----------TTSEEEE--SS--SB--GGG-S---TS-HHHHHHHTT-SEEEESSHHHHHHHHH
T ss_pred CcEEEECCCCCcccccc-------cCCCcEEEEecCCCcccccchhccccccchhhhhhhccCCcEEEECCHHHHHHHHH
Confidence 9999999543221 111 0112256654454421110000 000111111245569999999998
Q ss_pred hcc-cccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEE
Q 022363 220 RTR-ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLF 273 (298)
Q Consensus 220 r~~-~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv 273 (298)
.++ ++.+|-. .-.-.+|.|..-.. +. ++.+++.+|++.+.-+|
T Consensus 152 ~f~~~~~~i~~-----~G~PR~D~l~~~~~----~~--~~~i~~~~~~~~~~k~I 195 (369)
T PF04464_consen 152 AFGYPEDKILV-----TGYPRNDYLFNKSK----EN--RNRIKKKLGIDKDKKVI 195 (369)
T ss_dssp HTT--GGGEEE-----S--GGGHHHHHSTT-----H--HHHHHHHTT--SS-EEE
T ss_pred HhccCcceEEE-----eCCCeEhHHhccCH----HH--HHHHHHHhccCCCCcEE
Confidence 887 5444443 46678888887222 22 67789999999986443
No 63
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.23 E-value=2.7 Score=41.30 Aligned_cols=76 Identities=18% Similarity=0.109 Sum_probs=52.6
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhcc
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~a 151 (298)
.++|+|++|+ |++ .=|++|+.|++.|.+|.+.-.++. +....+.+++.++|+++....... ...++
T Consensus 14 ~~~~~v~viG------~G~-~G~~~A~~L~~~G~~V~~~d~~~~----~~~~~~~~~l~~~gv~~~~~~~~~---~~~~~ 79 (480)
T PRK01438 14 WQGLRVVVAG------LGV-SGFAAADALLELGARVTVVDDGDD----ERHRALAAILEALGATVRLGPGPT---LPEDT 79 (480)
T ss_pred cCCCEEEEEC------CCH-HHHHHHHHHHHCCCEEEEEeCCch----hhhHHHHHHHHHcCCEEEECCCcc---ccCCC
Confidence 5788999984 333 344689999999999887643321 122245677888899998654333 24579
Q ss_pred CEEEEechhc
Q 022363 152 DLIVLNTAVA 161 (298)
Q Consensus 152 DLVIaNT~v~ 161 (298)
|+||..+.+.
T Consensus 80 D~Vv~s~Gi~ 89 (480)
T PRK01438 80 DLVVTSPGWR 89 (480)
T ss_pred CEEEECCCcC
Confidence 9999998874
No 64
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=86.18 E-value=3.4 Score=39.53 Aligned_cols=112 Identities=23% Similarity=0.228 Sum_probs=64.5
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH--
Q 022363 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-- 146 (298)
Q Consensus 69 ~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~-- 146 (298)
.+...||+|++. |.|-..+.|++.|.+.|.++..+.......... .-+...+.+....|+.......+.
T Consensus 266 ~~~l~g~~v~i~-------~~~~~~~~l~~~L~elG~~v~~v~~~~~~~~~~--e~~~~~~~~~~~~v~~~~~~~~~~~~ 336 (398)
T PF00148_consen 266 RERLGGKRVAIY-------GDPDRALGLARFLEELGMEVVAVGCDDKSPEDE--ERLRWLLEESDPEVIIDPDPEEIEEL 336 (398)
T ss_dssp HHHHTT-EEEEE-------SSHHHHHHHHHHHHHTT-EEEEEEESSGGHHHH--HHHHHHHHTTCSEEEESCBHHHHHHH
T ss_pred HHhhcCceEEEE-------cCchhHHHHHHHHHHcCCeEEEEEEccCchhHH--HHHHHHhhCCCcEEEeCCCHHHHHHH
Confidence 345669998874 446788899999999999999998665431111 111222222235666654444443
Q ss_pred -hhhccCEEEEechhchHHHHHHhhccCCCC--CCceEEEeeeccccccc
Q 022363 147 -TALKADLIVLNTAVAGKWLDAVLKEDVPRV--LPNVLWWIHEMRGHYFK 193 (298)
Q Consensus 147 -~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~--~~pVIWWIHE~r~~Yf~ 193 (298)
...+.|+++.++- ...|-+.+ +.|+. ..|+.+.++...+-|..
T Consensus 337 l~~~~pdl~ig~~~-~~~~a~~~---~~~~~~~~~P~~~~~~~~~~~~~G 382 (398)
T PF00148_consen 337 LEELKPDLLIGSSH-ERYLAKKL---GIPLIRIGFPVFDRISLTYRPYMG 382 (398)
T ss_dssp HHHHT-SEEEESHH-HHHHHHHT---T--EEE-SSSEEESSSGGGS-SSH
T ss_pred HHhcCCCEEEechh-hHHHHHHh---CCCeEEEeCCeeeeecCCCCCcEe
Confidence 3457999999988 44444433 22332 33888888765545544
No 65
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=85.58 E-value=11 Score=34.98 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=26.5
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 022363 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (298)
Q Consensus 76 kILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (298)
||+++. +.||+=+..-.+++.|++.+.++.++..
T Consensus 3 ki~i~~---Ggt~G~i~~a~l~~~L~~~~~~~~~~~~ 36 (380)
T PRK00025 3 RIAIVA---GEVSGDLLGAGLIRALKARAPNLEFVGV 36 (380)
T ss_pred eEEEEe---cCcCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 566664 5577878777799999998888888874
No 66
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=85.56 E-value=9.2 Score=37.18 Aligned_cols=39 Identities=18% Similarity=-0.010 Sum_probs=31.4
Q ss_pred EEEEeccCCCC-CchHHHHHHHHHHHhC--CCeEEEEeccCC
Q 022363 77 VLLVSHELSLS-GGPLLLMELAFLLRGV--GTKVNWITIQKP 115 (298)
Q Consensus 77 ILLISHELS~T-GAPLlLleLA~~Lkq~--G~~V~vL~~~~G 115 (298)
|-|+==+++-. ||=-+|++.+..|.+. |++|++.++...
T Consensus 3 ~~f~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~ 44 (419)
T cd03806 3 VGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLD 44 (419)
T ss_pred EEEECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 34444477877 9999999999999999 889999996543
No 67
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.50 E-value=4.6 Score=39.88 Aligned_cols=92 Identities=20% Similarity=0.242 Sum_probs=58.9
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhh
Q 022363 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTA 148 (298)
Q Consensus 69 ~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A 148 (298)
.+|.++|+|+++. ++++| +.+|++|++.|++|.+.=.+.. +..+.+.+++.+.|+.+....... +..
T Consensus 9 ~~~~~~~~i~v~G--~G~sG-----~a~a~~L~~~G~~V~~~D~~~~----~~~~~~~~~l~~~gi~~~~~~~~~--~~~ 75 (458)
T PRK01710 9 KKFIKNKKVAVVG--IGVSN-----IPLIKFLVKLGAKVTAFDKKSE----EELGEVSNELKELGVKLVLGENYL--DKL 75 (458)
T ss_pred hhhhcCCeEEEEc--ccHHH-----HHHHHHHHHCCCEEEEECCCCC----ccchHHHHHHHhCCCEEEeCCCCh--HHh
Confidence 3567789999986 45566 3778899999998876432221 111233456777899888653221 123
Q ss_pred hccCEEEEechhc--hHHHHHHhhccC
Q 022363 149 LKADLIVLNTAVA--GKWLDAVLKEDV 173 (298)
Q Consensus 149 ~~aDLVIaNT~v~--g~wl~~l~~~~~ 173 (298)
.++|+||....+. .+.+....+.+.
T Consensus 76 ~~~dlVV~Spgi~~~~p~~~~a~~~~i 102 (458)
T PRK01710 76 DGFDVIFKTPSMRIDSPELVKAKEEGA 102 (458)
T ss_pred ccCCEEEECCCCCCCchHHHHHHHcCC
Confidence 6899999987765 455665554444
No 68
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=85.44 E-value=2.9 Score=39.64 Aligned_cols=110 Identities=16% Similarity=0.053 Sum_probs=59.8
Q ss_pred hhccCEEEEechh----chHHHHHHhhccCCCCCCceEEEeeec-ccccccc-ccccccccccccccccHHHHHHHHHhc
Q 022363 148 ALKADLIVLNTAV----AGKWLDAVLKEDVPRVLPNVLWWIHEM-RGHYFKL-DYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (298)
Q Consensus 148 A~~aDLVIaNT~v----~g~wl~~l~~~~~p~~~~pVIWWIHE~-r~~Yf~l-~~vkhLp~v~~~~~~S~AtA~yw~~r~ 221 (298)
..++|+|+.--.. .+..+..+.+.. ....|++.+++|. ..+++-+ ++++.+..+ |+.++++...+-
T Consensus 98 ~~~pDvIi~thp~~~~~~~~~l~~~~~~~--~~~~p~~~~~tD~~~~~~~w~~~~~d~~~~~------s~~~~~~l~~~g 169 (382)
T PLN02605 98 KYKPDIIVSVHPLMQHVPLRVLRWQGKEL--GKKIPFTTVVTDLGTCHPTWFHKGVTRCFCP------SEEVAKRALKRG 169 (382)
T ss_pred hcCcCEEEEeCcCcccCHHHHHHHHhhcc--CCCCCEEEEECCCCCcCcccccCCCCEEEEC------CHHHHHHHHHcC
Confidence 3589999882111 222333332111 1123888888886 3444432 334444444 999999887663
Q ss_pred ccccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEec
Q 022363 222 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 277 (298)
Q Consensus 222 ~~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~ 277 (298)
-++.+|.. +.....++... . ...++..|+++|++++..+|..+.
T Consensus 170 ~~~~ki~v-----~g~~v~~~f~~----~---~~~~~~~r~~~gl~~~~~~il~~G 213 (382)
T PLN02605 170 LEPSQIRV-----YGLPIRPSFAR----A---VRPKDELRRELGMDEDLPAVLLMG 213 (382)
T ss_pred CCHHHEEE-----ECcccCHhhcc----C---CCCHHHHHHHcCCCCCCcEEEEEC
Confidence 35445543 44333333221 0 013556899999999886555443
No 69
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.53 E-value=10 Score=36.76 Aligned_cols=85 Identities=21% Similarity=0.268 Sum_probs=53.9
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhcc
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~a 151 (298)
+++|+|+++. |+++- +.+|+.|.+.|++|.+.-.+. .+......+++.+.|+.++....... ....+
T Consensus 3 ~~~k~v~iiG------~g~~G-~~~A~~l~~~G~~V~~~d~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~ 69 (450)
T PRK14106 3 LKGKKVLVVG------AGVSG-LALAKFLKKLGAKVILTDEKE----EDQLKEALEELGELGIELVLGEYPEE--FLEGV 69 (450)
T ss_pred cCCCEEEEEC------CCHHH-HHHHHHHHHCCCEEEEEeCCc----hHHHHHHHHHHHhcCCEEEeCCcchh--HhhcC
Confidence 5789998874 44444 599999999999998775321 11122334556566888765433222 24679
Q ss_pred CEEEEechhc--hHHHHHHh
Q 022363 152 DLIVLNTAVA--GKWLDAVL 169 (298)
Q Consensus 152 DLVIaNT~v~--g~wl~~l~ 169 (298)
|+||.|+.+. .+++.+..
T Consensus 70 d~vv~~~g~~~~~~~~~~a~ 89 (450)
T PRK14106 70 DLVVVSPGVPLDSPPVVQAH 89 (450)
T ss_pred CEEEECCCCCCCCHHHHHHH
Confidence 9999999753 44444443
No 70
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=84.51 E-value=4.5 Score=39.08 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=24.5
Q ss_pred CCCCCchHHHHHHHHHHHhCCCeEEEEeccC
Q 022363 84 LSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (298)
Q Consensus 84 LS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~ 114 (298)
.+-||+=+.--.+|+.|++.|.++.++...+
T Consensus 12 aGgtsGhi~paal~~~l~~~~~~~~~~g~gg 42 (385)
T TIGR00215 12 AGEASGDILGAGLRQQLKEHYPNARFIGVAG 42 (385)
T ss_pred eCCccHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 4567777776699999999999999888543
No 71
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=83.97 E-value=3.1 Score=39.74 Aligned_cols=85 Identities=22% Similarity=0.184 Sum_probs=48.4
Q ss_pred EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC----------------------Cchhhhhh-hHHHHHHcC
Q 022363 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS----------------------EEDEVIYS-LEHKMWDRG 133 (298)
Q Consensus 77 ILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~----------------------~~g~v~~~-L~~kll~rg 133 (298)
+=+|..+-++-=-|+-+++.++.|.+.|+.|.-.++.++- ..|..... |+.-..+..
T Consensus 96 LEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~~ 175 (247)
T PF05690_consen 96 LEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNLRIIIERAD 175 (247)
T ss_dssp E--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT---SSTHHHHHHHHHHGS
T ss_pred EEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCCCCEEEecccccccCcCCCCHHHHHHHHHhcC
Confidence 3356666666678999999999999999999887765542 22222222 222233347
Q ss_pred Cceeehhchh-----HHHhhhccCEEEEechhc
Q 022363 134 VQVISAKGQE-----TINTALKADLIVLNTAVA 161 (298)
Q Consensus 134 I~v~~~k~~~-----~i~~A~~aDLVIaNT~v~ 161 (298)
+||+-|-|.- ..-+.+.+|-|.+||+++
T Consensus 176 vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA 208 (247)
T PF05690_consen 176 VPVIVDAGIGTPSDAAQAMELGADAVLVNTAIA 208 (247)
T ss_dssp SSBEEES---SHHHHHHHHHTT-SEEEESHHHH
T ss_pred CcEEEeCCCCCHHHHHHHHHcCCceeehhhHHh
Confidence 8888763332 223577999999999986
No 72
>PLN02275 transferase, transferring glycosyl groups
Probab=83.45 E-value=13 Score=35.26 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=26.1
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (298)
+|-.+++. .+..++|-+..+...+.++.|.+|.+++..++
T Consensus 5 ~~~~~~~~--~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~ 44 (371)
T PLN02275 5 GRAAVVVL--GDFGRSPRMQYHALSLARQASFQVDVVAYGGS 44 (371)
T ss_pred cEEEEEEe--cCCCCCHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 44444444 55566777766666777666678999986543
No 73
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.38 E-value=5.3 Score=39.81 Aligned_cols=92 Identities=20% Similarity=0.138 Sum_probs=58.0
Q ss_pred CCCccccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhH
Q 022363 65 KSSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQET 144 (298)
Q Consensus 65 ~~~~~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~ 144 (298)
|-+-+.+..+|+|+++. ++.+| +.+|++|++.|++|.+.= +.. . ...+.+.+.|+++....+...
T Consensus 6 ~~~~~~~~~~~~v~v~G--~G~sG-----~a~a~~L~~~G~~V~~~D-~~~---~----~~~~~l~~~gi~~~~~~~~~~ 70 (473)
T PRK00141 6 PLSALPQELSGRVLVAG--AGVSG-----RGIAAMLSELGCDVVVAD-DNE---T----ARHKLIEVTGVADISTAEASD 70 (473)
T ss_pred hhhhcccccCCeEEEEc--cCHHH-----HHHHHHHHHCCCEEEEEC-CCh---H----HHHHHHHhcCcEEEeCCCchh
Confidence 34567889999999997 55555 377888999999765533 221 1 112223445998876432221
Q ss_pred HHhhhccCEEEEechhc--hHHHHHHhhccC
Q 022363 145 INTALKADLIVLNTAVA--GKWLDAVLKEDV 173 (298)
Q Consensus 145 i~~A~~aDLVIaNT~v~--g~wl~~l~~~~~ 173 (298)
...++|+||....+. .+++.+..+...
T Consensus 71 --~~~~~d~vV~Spgi~~~~p~~~~a~~~gi 99 (473)
T PRK00141 71 --QLDSFSLVVTSPGWRPDSPLLVDAQSQGL 99 (473)
T ss_pred --HhcCCCEEEeCCCCCCCCHHHHHHHHCCC
Confidence 235899999998875 345555544444
No 74
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=82.83 E-value=7.6 Score=38.68 Aligned_cols=105 Identities=19% Similarity=0.199 Sum_probs=60.3
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH---
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN--- 146 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~--- 146 (298)
...+||++.+.+ +|-..+.+++.|++.|.+|+.+....+.. +....+. +.+.-++.++.+.....+.
T Consensus 322 ~~L~Gkrv~i~~-------g~~~~~~l~~~l~elGmevv~~~t~~~~~--~d~~~l~-~~~~~~~~v~~~~d~~e~~~~i 391 (456)
T TIGR01283 322 ERLKGKKAAIYT-------GGVKSWSLVSALQDLGMEVVATGTQKGTE--EDYARIR-ELMGEGTVMLDDANPRELLKLL 391 (456)
T ss_pred HHcCCCEEEEEc-------CCchHHHHHHHHHHCCCEEEEEeeecCCH--HHHHHHH-HHcCCCeEEEeCCCHHHHHHHH
Confidence 446899996532 23566789999999999999886554421 1111122 2222355555554444443
Q ss_pred hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc
Q 022363 147 TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK 193 (298)
Q Consensus 147 ~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~ 193 (298)
...++|++|.|+-. +++.. +..+ |.+..-|+..+-|+.
T Consensus 392 ~~~~pDl~ig~~~~--~~~a~--k~gi-----P~i~~~~~~~~p~~G 429 (456)
T TIGR01283 392 LEYKADLLIAGGKE--RYTAL--KLGI-----PFCDINHEREHPYAG 429 (456)
T ss_pred hhcCCCEEEEccch--HHHHH--hcCC-----CEEEcccccCCCCcc
Confidence 24589999998654 22221 1233 666665654444544
No 75
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.31 E-value=13 Score=35.94 Aligned_cols=88 Identities=20% Similarity=0.249 Sum_probs=54.9
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhh-c
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTAL-K 150 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~-~ 150 (298)
++||+|+++.- +. .=+..|+.|.+.|++|.+.-.+..+ . .+..+++.+.|+++........+ .. .
T Consensus 3 ~~~k~v~v~G~------g~-~G~s~a~~l~~~G~~V~~~d~~~~~-~----~~~~~~l~~~g~~~~~~~~~~~~--~~~~ 68 (447)
T PRK02472 3 YQNKKVLVLGL------AK-SGYAAAKLLHKLGANVTVNDGKPFS-E----NPEAQELLEEGIKVICGSHPLEL--LDED 68 (447)
T ss_pred cCCCEEEEEee------CH-HHHHHHHHHHHCCCEEEEEcCCCcc-c----hhHHHHHHhcCCEEEeCCCCHHH--hcCc
Confidence 46899988872 22 3345699999999998776322111 1 12345677779888754222222 23 4
Q ss_pred cCEEEEechhc--hHHHHHHhhccC
Q 022363 151 ADLIVLNTAVA--GKWLDAVLKEDV 173 (298)
Q Consensus 151 aDLVIaNT~v~--g~wl~~l~~~~~ 173 (298)
+|+||.+..+. .+.+.+..+.+.
T Consensus 69 ~d~vV~s~gi~~~~~~~~~a~~~~i 93 (447)
T PRK02472 69 FDLMVKNPGIPYTNPMVEKALEKGI 93 (447)
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCC
Confidence 99999999774 566666654444
No 76
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=81.98 E-value=40 Score=33.00 Aligned_cols=157 Identities=14% Similarity=0.081 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh---------h-------chhHHHhhh--ccC
Q 022363 91 LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA---------K-------GQETINTAL--KAD 152 (298)
Q Consensus 91 LlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~---------k-------~~~~i~~A~--~aD 152 (298)
.+.-.+.+.|++.|++|.+.+.+++. +.+.+...|++...- | ..+..+.+. ++|
T Consensus 14 hfFk~~I~eL~~~GheV~it~R~~~~--------~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~~pD 85 (335)
T PF04007_consen 14 HFFKNIIRELEKRGHEVLITARDKDE--------TEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKKFKPD 85 (335)
T ss_pred HHHHHHHHHHHhCCCEEEEEEeccch--------HHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 34556788999999999999877652 233333335554411 1 111112333 899
Q ss_pred EEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccccccccccccccccccccHHHHHHHHHhcccccccc-cCC
Q 022363 153 LIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIK-MPD 231 (298)
Q Consensus 153 LVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~l~~vkhLp~v~~~~~~S~AtA~yw~~r~~~~~~Ik-l~~ 231 (298)
++|.-.-+.+.-+...+ ..|.|.+..-....+. ++. .+|+.--+..++-.-.+.|+....+ ++|. -+-
T Consensus 86 v~is~~s~~a~~va~~l-------giP~I~f~D~e~a~~~--~~L-t~Pla~~i~~P~~~~~~~~~~~G~~-~~i~~y~G 154 (335)
T PF04007_consen 86 VAISFGSPEAARVAFGL-------GIPSIVFNDTEHAIAQ--NRL-TLPLADVIITPEAIPKEFLKRFGAK-NQIRTYNG 154 (335)
T ss_pred EEEecCcHHHHHHHHHh-------CCCeEEEecCchhhcc--cee-ehhcCCeeECCcccCHHHHHhcCCc-CCEEEECC
Confidence 99976666665555443 2388888754323222 111 2444422333333333444444324 5665 441
Q ss_pred -ceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecccC
Q 022363 232 -TYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSMN 280 (298)
Q Consensus 232 -~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~sv~ 280 (298)
..+..|-+ + .-.+++.++||+.++..+|-=..+.+
T Consensus 155 ~~E~ayl~~-----F---------~Pd~~vl~~lg~~~~~yIvvR~~~~~ 190 (335)
T PF04007_consen 155 YKELAYLHP-----F---------KPDPEVLKELGLDDEPYIVVRPEAWK 190 (335)
T ss_pred eeeEEeecC-----C---------CCChhHHHHcCCCCCCEEEEEecccc
Confidence 12223322 3 34578889999988888886665543
No 77
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=81.56 E-value=6.6 Score=38.60 Aligned_cols=82 Identities=17% Similarity=0.141 Sum_probs=50.3
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHH--HHcCCceeehhchhHHH-
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKM--WDRGVQVISAKGQETIN- 146 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kl--l~rgI~v~~~k~~~~i~- 146 (298)
.+.+||+|.+. |.|-..+.+++.|.+.|.+|..+....+.. +....++.+. ......++.......+.
T Consensus 295 ~~l~gk~v~i~-------~~~~~~~~l~~~L~e~G~~v~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~d~~el~~ 365 (428)
T cd01965 295 FYLGGKRVAIA-------GDPDLLLGLSRFLLEMGAEPVAAVTGTDNP--PFEKRMELLASLEGIPAEVVFVGDLWDLES 365 (428)
T ss_pred HHhcCCEEEEE-------cChHHHHHHHHHHHHcCCcceEEEEcCCCc--hhHHHHHHhhhhcCCCceEEECCCHHHHHH
Confidence 57789999876 355578899999999999998777544321 1111121111 11133344443344443
Q ss_pred --hhhccCEEEEechh
Q 022363 147 --TALKADLIVLNTAV 160 (298)
Q Consensus 147 --~A~~aDLVIaNT~v 160 (298)
...++|+||.|+-.
T Consensus 366 ~i~~~~pdliig~~~~ 381 (428)
T cd01965 366 LAKEEPVDLLIGNSHG 381 (428)
T ss_pred HhhccCCCEEEECchh
Confidence 23479999999974
No 78
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=81.46 E-value=10 Score=37.52 Aligned_cols=82 Identities=17% Similarity=0.194 Sum_probs=52.2
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc----CCceeehhchhH
Q 022363 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR----GVQVISAKGQET 144 (298)
Q Consensus 69 ~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~r----gI~v~~~k~~~~ 144 (298)
..+.+||++.+.. .|-.++.+++.|.+.|.++..+...... ...-..+...+.+. ++.|+.......
T Consensus 298 ~~~l~gkrv~i~g-------~~~~~~~la~~L~elGm~v~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~v~~~~d~~e 368 (435)
T cd01974 298 HQYLHGKKFALYG-------DPDFLIGLTSFLLELGMEPVHVLTGNGG--KRFEKEMQALLDASPYGAGAKVYPGKDLWH 368 (435)
T ss_pred HHhcCCCEEEEEc-------ChHHHHHHHHHHHHCCCEEEEEEeCCCC--HHHHHHHHHHHhhcCCCCCcEEEECCCHHH
Confidence 3467899998764 4667999999999999999776643322 22222223333321 455655544333
Q ss_pred HH---hhhccCEEEEech
Q 022363 145 IN---TALKADLIVLNTA 159 (298)
Q Consensus 145 i~---~A~~aDLVIaNT~ 159 (298)
+. ...++|++|.|+-
T Consensus 369 ~~~~i~~~~pDliiG~s~ 386 (435)
T cd01974 369 LRSLLFTEPVDLLIGNTY 386 (435)
T ss_pred HHHHHhhcCCCEEEECcc
Confidence 33 3458999999996
No 79
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=79.94 E-value=8.4 Score=34.69 Aligned_cols=129 Identities=19% Similarity=0.222 Sum_probs=70.1
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc-CCceeehhchhHHHhhhc
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISAKGQETINTALK 150 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~r-gI~v~~~k~~~~i~~A~~ 150 (298)
++||+||+|+ |++. -+.-++.|.+.|+.|.++..+ ..+++ .++.+. ++......+... ...+
T Consensus 7 l~gk~vlVvG------gG~v-a~rk~~~Ll~~ga~VtVvsp~---~~~~l-----~~l~~~~~i~~~~~~~~~~--dl~~ 69 (205)
T TIGR01470 7 LEGRAVLVVG------GGDV-ALRKARLLLKAGAQLRVIAEE---LESEL-----TLLAEQGGITWLARCFDAD--ILEG 69 (205)
T ss_pred cCCCeEEEEC------cCHH-HHHHHHHHHHCCCEEEEEcCC---CCHHH-----HHHHHcCCEEEEeCCCCHH--HhCC
Confidence 5789999984 5554 467778888899999998832 22232 334444 455544444322 3579
Q ss_pred cCEEEEechh---chHHHHHHhhccCCCCCCceEEEeeecc-ccccccccccccccccccccc--cHHHHHHHHHhccc
Q 022363 151 ADLIVLNTAV---AGKWLDAVLKEDVPRVLPNVLWWIHEMR-GHYFKLDYVKHLPLVAGAMID--SHVTAEYWKNRTRE 223 (298)
Q Consensus 151 aDLVIaNT~v---~g~wl~~l~~~~~p~~~~pVIWWIHE~r-~~Yf~l~~vkhLp~v~~~~~~--S~AtA~yw~~r~~~ 223 (298)
+|+||+-|=. ..+......+.++ +|-. .-|-+ +.+.....++.=+.+.++... |.+.|.+.+++-.+
T Consensus 70 ~~lVi~at~d~~ln~~i~~~a~~~~i-----lvn~-~d~~e~~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~ 142 (205)
T TIGR01470 70 AFLVIAATDDEELNRRVAHAARARGV-----PVNV-VDDPELCSFIFPSIVDRSPVVVAISSGGAAPVLARLLRERIET 142 (205)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHcCC-----EEEE-CCCcccCeEEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 9999998743 2333333322232 2211 11111 222222333433333333333 77888888777654
No 80
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.88 E-value=7.7 Score=38.03 Aligned_cols=73 Identities=21% Similarity=0.136 Sum_probs=47.3
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhh
Q 022363 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTA 148 (298)
Q Consensus 69 ~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A 148 (298)
++.+++|+|+++. ++.+|- .+|++|++.|++|...= ... ... .++.+.|+.+..- ... ..
T Consensus 4 ~~~~~~~~i~viG--~G~~G~-----~~a~~l~~~G~~v~~~D-~~~---~~~-----~~l~~~g~~~~~~--~~~--~~ 63 (460)
T PRK01390 4 VTGFAGKTVAVFG--LGGSGL-----ATARALVAGGAEVIAWD-DNP---ASR-----AKAAAAGITTADL--RTA--DW 63 (460)
T ss_pred ccccCCCEEEEEe--ecHhHH-----HHHHHHHHCCCEEEEEC-CCh---hhH-----HHHHhcCccccCC--Chh--HH
Confidence 3456789999998 788883 45999999999876533 211 111 2345668875432 111 23
Q ss_pred hccCEEEEechhc
Q 022363 149 LKADLIVLNTAVA 161 (298)
Q Consensus 149 ~~aDLVIaNT~v~ 161 (298)
.++|+||...++.
T Consensus 64 ~~~d~vv~sp~i~ 76 (460)
T PRK01390 64 SGFAALVLSPGVP 76 (460)
T ss_pred cCCCEEEECCCCC
Confidence 5799999887765
No 81
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=79.70 E-value=8.8 Score=28.60 Aligned_cols=58 Identities=28% Similarity=0.342 Sum_probs=43.9
Q ss_pred CchHHHHHHHHHHHhCCCeEEEEeccCCC---CchhhhhhhHHHHHHcCCceeehhchhHH
Q 022363 88 GGPLLLMELAFLLRGVGTKVNWITIQKPS---EEDEVIYSLEHKMWDRGVQVISAKGQETI 145 (298)
Q Consensus 88 GAPLlLleLA~~Lkq~G~~V~vL~~~~G~---~~g~v~~~L~~kll~rgI~v~~~k~~~~i 145 (298)
||=..=+|+|..|...|.+|.++...+.. .+.+....+++.+.++||++.......++
T Consensus 6 GgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i 66 (80)
T PF00070_consen 6 GGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEI 66 (80)
T ss_dssp SSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEE
T ss_pred CcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 55567789999999999999999854433 34556667788888889999977554444
No 82
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=79.48 E-value=4.5 Score=39.55 Aligned_cols=80 Identities=15% Similarity=0.148 Sum_probs=55.2
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccC---CCCchhhhhhhHHHHHHcCCceeehhchhHHH----
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK---PSEEDEVIYSLEHKMWDRGVQVISAKGQETIN---- 146 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~---G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~---- 146 (298)
++++++| |+-..-+|+|..|++.|.+|.++.... +..+.++...+.+.+.++||++........+.
T Consensus 148 ~~~vvVi-------GgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~v 220 (438)
T PRK13512 148 VDKALVV-------GAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAINGNEV 220 (438)
T ss_pred CCEEEEE-------CCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCCEE
Confidence 4778777 444578999999999999999998442 12345666678888888999987543222211
Q ss_pred -----hhhccCEEEEechh
Q 022363 147 -----TALKADLIVLNTAV 160 (298)
Q Consensus 147 -----~A~~aDLVIaNT~v 160 (298)
....+|+|+.-|-.
T Consensus 221 ~~~~g~~~~~D~vl~a~G~ 239 (438)
T PRK13512 221 TFKSGKVEHYDMIIEGVGT 239 (438)
T ss_pred EECCCCEEEeCEEEECcCC
Confidence 12468999876554
No 83
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=79.08 E-value=17 Score=35.51 Aligned_cols=106 Identities=19% Similarity=0.210 Sum_probs=60.1
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH--
Q 022363 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-- 146 (298)
Q Consensus 69 ~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~-- 146 (298)
.....||++.+.+ .|-....+++.|++.|.+|+.+....+.. +....+. +.+..+..++.+....++.
T Consensus 282 ~~~l~gkrv~i~~-------~~~~~~~la~~l~elGm~v~~~~~~~~~~--~~~~~~~-~~~~~~~~v~~~~~~~e~~~~ 351 (410)
T cd01968 282 RARLEGKKAALYT-------GGVKSWSLVSALQDLGMEVVATGTQKGTK--EDYERIK-ELLGEGTVIVDDANPRELKKL 351 (410)
T ss_pred HHHhCCCEEEEEc-------CCchHHHHHHHHHHCCCEEEEEecccCCH--HHHHHHH-HHhCCCcEEEeCCCHHHHHHH
Confidence 4567899997643 23345889999999999998887544321 1111122 2222355555554433333
Q ss_pred -hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc
Q 022363 147 -TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK 193 (298)
Q Consensus 147 -~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~ 193 (298)
...++|++|.|+-. +++..- ..+ |.+.+-++.++.|..
T Consensus 352 i~~~~pDl~ig~s~~--~~~a~~--~gi-----p~~~~~~~~~~~~~G 390 (410)
T cd01968 352 LKEKKADLLVAGGKE--RYLALK--LGI-----PFCDINHERKHPYAG 390 (410)
T ss_pred HhhcCCCEEEECCcc--hhhHHh--cCC-----CEEEccccccCCccc
Confidence 24579999999764 233211 233 667665554444443
No 84
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=78.79 E-value=6.5 Score=34.09 Aligned_cols=80 Identities=20% Similarity=0.179 Sum_probs=48.0
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHH-HhhhccC
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETI-NTALKAD 152 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i-~~A~~aD 152 (298)
+++|+++-=.-|..|- =+-+|+.|.+.|++|.++....++...+....-.+.+.+.|++++........ .....+|
T Consensus 25 ~~~v~il~G~GnNGgD---gl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d 101 (169)
T PF03853_consen 25 GPRVLILCGPGNNGGD---GLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPAD 101 (169)
T ss_dssp T-EEEEEE-SSHHHHH---HHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCES
T ss_pred CCeEEEEECCCCChHH---HHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhccccccc
Confidence 4445544433344333 45679999999999999664444434455555566777779998865333322 2344888
Q ss_pred EEEE
Q 022363 153 LIVL 156 (298)
Q Consensus 153 LVIa 156 (298)
+||=
T Consensus 102 lIID 105 (169)
T PF03853_consen 102 LIID 105 (169)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
No 85
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=78.26 E-value=9.6 Score=30.29 Aligned_cols=64 Identities=33% Similarity=0.379 Sum_probs=41.4
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhcc
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~a 151 (298)
++||+||+|+ |+++.. +=++.|.+.|++|.|+...- +..+..++...+... ....++
T Consensus 5 l~~~~vlVvG------gG~va~-~k~~~Ll~~gA~v~vis~~~-------------~~~~~~i~~~~~~~~---~~l~~~ 61 (103)
T PF13241_consen 5 LKGKRVLVVG------GGPVAA-RKARLLLEAGAKVTVISPEI-------------EFSEGLIQLIRREFE---EDLDGA 61 (103)
T ss_dssp -TT-EEEEEE------ESHHHH-HHHHHHCCCTBEEEEEESSE-------------HHHHTSCEEEESS-G---GGCTTE
T ss_pred cCCCEEEEEC------CCHHHH-HHHHHHHhCCCEEEEECCch-------------hhhhhHHHHHhhhHH---HHHhhh
Confidence 4789999996 555554 77788888899999999221 222345555444332 246789
Q ss_pred CEEEEec
Q 022363 152 DLIVLNT 158 (298)
Q Consensus 152 DLVIaNT 158 (298)
|+||+.|
T Consensus 62 ~lV~~at 68 (103)
T PF13241_consen 62 DLVFAAT 68 (103)
T ss_dssp SEEEE-S
T ss_pred eEEEecC
Confidence 9999988
No 86
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=78.06 E-value=8.9 Score=36.90 Aligned_cols=85 Identities=27% Similarity=0.213 Sum_probs=57.5
Q ss_pred EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC----------------------Cchhhhh-hhHHHHHHcC
Q 022363 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS----------------------EEDEVIY-SLEHKMWDRG 133 (298)
Q Consensus 77 ILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~----------------------~~g~v~~-~L~~kll~rg 133 (298)
+=+|+|+=.+-=-|+-+++.++.|.+.|+.|.--++.++- .-|.... .|+--+.+..
T Consensus 103 lEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~iiie~a~ 182 (262)
T COG2022 103 LEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEEAD 182 (262)
T ss_pred EEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhcCceEeccccccccCCcCcCCHHHHHHHHHhCC
Confidence 6688999888899999999999999999999877765542 1111111 2222222236
Q ss_pred Cceeehhchh-----HHHhhhccCEEEEechhc
Q 022363 134 VQVISAKGQE-----TINTALKADLIVLNTAVA 161 (298)
Q Consensus 134 I~v~~~k~~~-----~i~~A~~aDLVIaNT~v~ 161 (298)
+|++-|-|.- ..-+...+|-|..||+++
T Consensus 183 VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA 215 (262)
T COG2022 183 VPVIVDAGIGTPSDAAQAMELGADAVLLNTAIA 215 (262)
T ss_pred CCEEEeCCCCChhHHHHHHhcccceeehhhHhh
Confidence 6666653322 222567999999999987
No 87
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=77.54 E-value=16 Score=33.09 Aligned_cols=129 Identities=23% Similarity=0.279 Sum_probs=76.2
Q ss_pred cEEEEEecc---CCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh----hc-hhHHH
Q 022363 75 KLVLLVSHE---LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA----KG-QETIN 146 (298)
Q Consensus 75 KkILLISHE---LS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~----k~-~~~i~ 146 (298)
|+|.+|.+- +...|==-+.=||+..|.+.|++|.|-+..+..+. . +... +|+.++.- .+ -++|.
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~-~-----~~~y--~gv~l~~i~~~~~g~~~si~ 73 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPY-K-----EFEY--NGVRLVYIPAPKNGSAESII 73 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCC-C-----Cccc--CCeEEEEeCCCCCCchHHHH
Confidence 567777776 56677778889999999999999999985543211 1 1222 35444422 22 23332
Q ss_pred -------hhh--------ccCEEEE--ec--hhchHHHHHHhhccCCCCCCceEEEeeecc----------ccccc----
Q 022363 147 -------TAL--------KADLIVL--NT--AVAGKWLDAVLKEDVPRVLPNVLWWIHEMR----------GHYFK---- 193 (298)
Q Consensus 147 -------~A~--------~aDLVIa--NT--~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r----------~~Yf~---- 193 (298)
.+. +.|.|+. ++ .....+++.+. ....|++-=+|..+ +.|+.
T Consensus 74 yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~~-----~~g~~v~vN~DGlEWkR~KW~~~~k~~lk~~E~ 148 (185)
T PF09314_consen 74 YDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFLRKLR-----KKGGKVVVNMDGLEWKRAKWGRPAKKYLKFSEK 148 (185)
T ss_pred HHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHHHhhh-----hcCCcEEECCCcchhhhhhcCHHHHHHHHHHHH
Confidence 122 3454443 33 22344555442 11227888888776 44444
Q ss_pred --cccccccccccccccccHHHHHHHHHhcc
Q 022363 194 --LDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (298)
Q Consensus 194 --l~~vkhLp~v~~~~~~S~AtA~yw~~r~~ 222 (298)
..+..+++ .||...++|++++++
T Consensus 149 ~avk~ad~lI------aDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 149 LAVKYADRLI------ADSKGIQDYIKERYG 173 (185)
T ss_pred HHHHhCCEEE------EcCHHHHHHHHHHcC
Confidence 22333344 459999999999998
No 88
>PRK06988 putative formyltransferase; Provisional
Probab=77.07 E-value=15 Score=35.10 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=47.8
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchh-hhhhhHHHHHHcCCceeeh-h--chhHHH--hh
Q 022363 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE-VIYSLEHKMWDRGVQVISA-K--GQETIN--TA 148 (298)
Q Consensus 75 KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~-v~~~L~~kll~rgI~v~~~-k--~~~~i~--~A 148 (298)
.||+|+ |.|-+-....+.|.+.|++++.+..+.+...+. ...++.+...+.||+++.- + ..+.++ ..
T Consensus 3 mkIvf~-------Gs~~~a~~~L~~L~~~~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~~~~~~~~~~~l~~ 75 (312)
T PRK06988 3 PRAVVF-------AYHNVGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPADPNDPELRAAVAA 75 (312)
T ss_pred cEEEEE-------eCcHHHHHHHHHHHhCCCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccccCCCHHHHHHHHh
Confidence 356665 555566667777777899988877653222222 2346788888889999862 1 122222 35
Q ss_pred hccCEEEEe
Q 022363 149 LKADLIVLN 157 (298)
Q Consensus 149 ~~aDLVIaN 157 (298)
.++|++|+-
T Consensus 76 ~~~Dliv~~ 84 (312)
T PRK06988 76 AAPDFIFSF 84 (312)
T ss_pred cCCCEEEEe
Confidence 689998753
No 89
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=76.81 E-value=68 Score=34.18 Aligned_cols=65 Identities=18% Similarity=0.243 Sum_probs=45.3
Q ss_pred ccccccccEEEEEeccCCCCCchHHHH----HHHHHHHhCCC--------eEEEEeccCCC-CchhhhhhhHHHHHHcCC
Q 022363 68 PLSFMKSKLVLLVSHELSLSGGPLLLM----ELAFLLRGVGT--------KVNWITIQKPS-EEDEVIYSLEHKMWDRGV 134 (298)
Q Consensus 68 ~~~f~~~KkILLISHELS~TGAPLlLl----eLA~~Lkq~G~--------~V~vL~~~~G~-~~g~v~~~L~~kll~rgI 134 (298)
|-+|+ | .+.++|-.|+-.||--=+. |++++.+|.|- +|.+++..--+ .+.+ +..+.+.+.+|
T Consensus 157 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 231 (578)
T PRK15490 157 PVGSF-G-RLALCTGSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELRQD---FFLKEVLEEQV 231 (578)
T ss_pred Ccccc-c-ceEEEecCCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccCcc---hhHHHHHhcCC
Confidence 44454 2 4899999999999977666 88899999877 78888832222 2223 34556666888
Q ss_pred cee
Q 022363 135 QVI 137 (298)
Q Consensus 135 ~v~ 137 (298)
+|+
T Consensus 232 ~~~ 234 (578)
T PRK15490 232 EVL 234 (578)
T ss_pred ceE
Confidence 877
No 90
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=76.55 E-value=22 Score=34.27 Aligned_cols=87 Identities=24% Similarity=0.210 Sum_probs=60.3
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc--------hhH
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--------QET 144 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~--------~~~ 144 (298)
+++.|.|++ .+.+|=.-.+..||.++++.|..|.++...-- ..--+..+.....++|++++.... .+.
T Consensus 113 ~~~vi~lvG--pnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~--r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~ 188 (318)
T PRK10416 113 KPFVILVVG--VNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF--RAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDA 188 (318)
T ss_pred CCeEEEEEC--CCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc--chhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHH
Confidence 477888888 89999999999999999999999998874321 000111244455667899875421 122
Q ss_pred HH--hhhccCEEEEechhchH
Q 022363 145 IN--TALKADLIVLNTAVAGK 163 (298)
Q Consensus 145 i~--~A~~aDLVIaNT~v~g~ 163 (298)
+. ...++|+||+.|+-...
T Consensus 189 l~~~~~~~~D~ViIDTaGr~~ 209 (318)
T PRK10416 189 IQAAKARGIDVLIIDTAGRLH 209 (318)
T ss_pred HHHHHhCCCCEEEEeCCCCCc
Confidence 22 35689999999996543
No 91
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=76.30 E-value=11 Score=38.11 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=50.9
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH--
Q 022363 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-- 146 (298)
Q Consensus 69 ~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~-- 146 (298)
..+.+||++.+ .|.|-....+++.|++.|.+|..+........+. .. .+.+++.+..++.+....++.
T Consensus 319 ~~~l~Gk~vaI-------~~~~~~~~~la~~l~ElGm~v~~~~~~~~~~~~~--~~-l~~~~~~~~~v~~d~~~~e~~~~ 388 (475)
T PRK14478 319 RPRLEGKRVLL-------YTGGVKSWSVVKALQELGMEVVGTSVKKSTDEDK--ER-IKELMGPDAHMIDDANPRELYKM 388 (475)
T ss_pred HHHhCCCEEEE-------EcCCchHHHHHHHHHHCCCEEEEEEEECCCHHHH--HH-HHHHcCCCcEEEeCCCHHHHHHH
Confidence 45678999976 2344567799999999999999887554321111 11 223333355666664344443
Q ss_pred -hhhccCEEEEech
Q 022363 147 -TALKADLIVLNTA 159 (298)
Q Consensus 147 -~A~~aDLVIaNT~ 159 (298)
...++|++|.|+-
T Consensus 389 i~~~~pDliig~s~ 402 (475)
T PRK14478 389 LKEAKADIMLSGGR 402 (475)
T ss_pred HhhcCCCEEEecCc
Confidence 2358999999955
No 92
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=76.06 E-value=11 Score=34.95 Aligned_cols=128 Identities=14% Similarity=0.058 Sum_probs=67.7
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhccC
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~aD 152 (298)
++|+||+|+ |+++. +.=++.|.+.|+.|.|++ +...+++ .+....-.+......+... -+.+++
T Consensus 24 ~~~~VLVVG------GG~VA-~RK~~~Ll~~gA~VtVVa---p~i~~el----~~l~~~~~i~~~~r~~~~~--dl~g~~ 87 (223)
T PRK05562 24 NKIKVLIIG------GGKAA-FIKGKTFLKKGCYVYILS---KKFSKEF----LDLKKYGNLKLIKGNYDKE--FIKDKH 87 (223)
T ss_pred CCCEEEEEC------CCHHH-HHHHHHHHhCCCEEEEEc---CCCCHHH----HHHHhCCCEEEEeCCCChH--HhCCCc
Confidence 366777774 77777 555567777899999999 3323333 3322223566665544433 257899
Q ss_pred EEEEech---hchHHHHHHhhccCCCCCCceEEEeeecc--cccccccccccccccccccc--ccHHHHHHHHHhccc
Q 022363 153 LIVLNTA---VAGKWLDAVLKEDVPRVLPNVLWWIHEMR--GHYFKLDYVKHLPLVAGAMI--DSHVTAEYWKNRTRE 223 (298)
Q Consensus 153 LVIaNT~---v~g~wl~~l~~~~~p~~~~pVIWWIHE~r--~~Yf~l~~vkhLp~v~~~~~--~S~AtA~yw~~r~~~ 223 (298)
+||+-|- +... +.+..++. .++...=+.. +.+.....+++=+.+.++.. .|.+.|++++++.++
T Consensus 88 LViaATdD~~vN~~-I~~~a~~~------~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~~ie~ 158 (223)
T PRK05562 88 LIVIATDDEKLNNK-IRKHCDRL------YKLYIDCSDYKKGLCIIPYQRSTKNFVFALNTKGGSPKTSVFIGEKVKN 158 (223)
T ss_pred EEEECCCCHHHHHH-HHHHHHHc------CCeEEEcCCcccCeEEeeeEEecCCEEEEEECCCcCcHHHHHHHHHHHH
Confidence 9999874 2222 22222221 1111111111 22222334444333333332 378888888888754
No 93
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=75.50 E-value=15 Score=33.00 Aligned_cols=71 Identities=20% Similarity=0.273 Sum_probs=43.6
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcC-CceeehhchhHHHhhhc
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRG-VQVISAKGQETINTALK 150 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rg-I~v~~~k~~~~i~~A~~ 150 (298)
++||+||+|+ |+. +-...++.|.+.|++|.++.. ....++ . ++.+.| +.......... ...+
T Consensus 8 l~~k~vLVIG------gG~-va~~ka~~Ll~~ga~V~VIs~---~~~~~l----~-~l~~~~~i~~~~~~~~~~--~l~~ 70 (202)
T PRK06718 8 LSNKRVVIVG------GGK-VAGRRAITLLKYGAHIVVISP---ELTENL----V-KLVEEGKIRWKQKEFEPS--DIVD 70 (202)
T ss_pred cCCCEEEEEC------CCH-HHHHHHHHHHHCCCeEEEEcC---CCCHHH----H-HHHhCCCEEEEecCCChh--hcCC
Confidence 5799999994 444 447788888889999998862 212222 2 333333 43333222211 3578
Q ss_pred cCEEEEech
Q 022363 151 ADLIVLNTA 159 (298)
Q Consensus 151 aDLVIaNT~ 159 (298)
+|+||+-|-
T Consensus 71 adlViaaT~ 79 (202)
T PRK06718 71 AFLVIAATN 79 (202)
T ss_pred ceEEEEcCC
Confidence 999999763
No 94
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=75.36 E-value=33 Score=35.46 Aligned_cols=111 Identities=15% Similarity=0.141 Sum_probs=67.0
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHH----cCCceeehhchhHH
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD----RGVQVISAKGQETI 145 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~----rgI~v~~~k~~~~i 145 (298)
.+.+|||+.+. |.|-.++.+++.|.+.|.+++.+....+. .+.-..++..+.. .+..|...+....+
T Consensus 359 ~~l~GKrvaI~-------gdpd~~~~l~~fL~ElGmepv~v~~~~~~--~~~~~~l~~ll~~~~~~~~~~v~~~~Dl~~l 429 (515)
T TIGR01286 359 AWLHGKRFAIY-------GDPDFVMGLVRFVLELGCEPVHILCTNGT--KRWKAEMKALLAASPYGQNATVWIGKDLWHL 429 (515)
T ss_pred HHhcCceEEEE-------CCHHHHHHHHHHHHHCCCEEEEEEeCCCC--HHHHHHHHHHHhcCCCCCccEEEeCCCHHHH
Confidence 46789999876 47889999999999999997666544432 2221122222221 13455554433333
Q ss_pred H---hhhccCEEEEechhchHHHHHHhhccCCCC--CCceEEEeeeccccccc
Q 022363 146 N---TALKADLIVLNTAVAGKWLDAVLKEDVPRV--LPNVLWWIHEMRGHYFK 193 (298)
Q Consensus 146 ~---~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~--~~pVIWWIHE~r~~Yf~ 193 (298)
+ ...++|++|.||- ++++..- .++|.+ .-|+.-=+|.-+.-|..
T Consensus 430 ~~~l~~~~~DlliG~s~--~k~~a~~--~giPlir~gfPi~Dr~~~~r~p~~G 478 (515)
T TIGR01286 430 RSLVFTEPVDFLIGNSY--GKYIQRD--TLVPLIRIGFPIFDRHHLHRFPTIG 478 (515)
T ss_pred HHHHhhcCCCEEEECch--HHHHHHH--cCCCEEEecCCeeEEECCCCCceee
Confidence 3 3458999999996 4555432 355554 22666666665544444
No 95
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.33 E-value=19 Score=35.12 Aligned_cols=86 Identities=14% Similarity=0.195 Sum_probs=53.9
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHH--cCCceeehhchhHHHhhh
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD--RGVQVISAKGQETINTAL 149 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~--rgI~v~~~k~~~~i~~A~ 149 (298)
+.+|+|+++.. +.+| +..|++|.+.|++|.+.-.+.. .+ ..+++.+ .|+.+........ ...
T Consensus 3 ~~~~~~~v~G~--g~~G-----~~~a~~l~~~g~~v~~~d~~~~---~~----~~~~l~~~~~gi~~~~g~~~~~--~~~ 66 (445)
T PRK04308 3 FQNKKILVAGL--GGTG-----ISMIAYLRKNGAEVAAYDAELK---PE----RVAQIGKMFDGLVFYTGRLKDA--LDN 66 (445)
T ss_pred CCCCEEEEECC--CHHH-----HHHHHHHHHCCCEEEEEeCCCC---ch----hHHHHhhccCCcEEEeCCCCHH--HHh
Confidence 35788998873 3333 4568999999999876542221 11 1334443 4888776533322 236
Q ss_pred ccCEEEEechhc--hHHHHHHhhccC
Q 022363 150 KADLIVLNTAVA--GKWLDAVLKEDV 173 (298)
Q Consensus 150 ~aDLVIaNT~v~--g~wl~~l~~~~~ 173 (298)
++|+||....+. .+++....+...
T Consensus 67 ~~d~vv~spgi~~~~p~~~~a~~~~i 92 (445)
T PRK04308 67 GFDILALSPGISERQPDIEAFKQNGG 92 (445)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHcCC
Confidence 899999999987 466666654444
No 96
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=74.32 E-value=14 Score=31.85 Aligned_cols=67 Identities=21% Similarity=0.244 Sum_probs=42.2
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc-CCceeehhchhHHHhhhc
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISAKGQETINTALK 150 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~r-gI~v~~~k~~~~i~~A~~ 150 (298)
++||+||+|+ |++ +-.+.++.|.+.|++|.++. ++. .+++.+. ++....+..++. -..+
T Consensus 11 l~~~~vlVvG------GG~-va~rka~~Ll~~ga~V~VIs---p~~--------~~~l~~l~~i~~~~~~~~~~--dl~~ 70 (157)
T PRK06719 11 LHNKVVVIIG------GGK-IAYRKASGLKDTGAFVTVVS---PEI--------CKEMKELPYITWKQKTFSND--DIKD 70 (157)
T ss_pred cCCCEEEEEC------CCH-HHHHHHHHHHhCCCEEEEEc---Ccc--------CHHHHhccCcEEEecccChh--cCCC
Confidence 6799999984 444 45788899999999999995 221 1233333 233322222211 2578
Q ss_pred cCEEEEec
Q 022363 151 ADLIVLNT 158 (298)
Q Consensus 151 aDLVIaNT 158 (298)
+|+||+-|
T Consensus 71 a~lViaaT 78 (157)
T PRK06719 71 AHLIYAAT 78 (157)
T ss_pred ceEEEECC
Confidence 99999966
No 97
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.54 E-value=18 Score=36.27 Aligned_cols=87 Identities=20% Similarity=0.268 Sum_probs=54.9
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhh
Q 022363 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTA 148 (298)
Q Consensus 69 ~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A 148 (298)
.++..||+|+++. ++++| +..+++|++.|++|.+ ..... . .+ +++.+.|+.++..... ....
T Consensus 7 ~~~~~~~~v~V~G--~G~sG-----~aa~~~L~~~G~~v~~-~D~~~---~----~~-~~l~~~g~~~~~~~~~--~~~l 68 (488)
T PRK03369 7 DPLLPGAPVLVAG--AGVTG-----RAVLAALTRFGARPTV-CDDDP---D----AL-RPHAERGVATVSTSDA--VQQI 68 (488)
T ss_pred ccccCCCeEEEEc--CCHHH-----HHHHHHHHHCCCEEEE-EcCCH---H----HH-HHHHhCCCEEEcCcch--HhHh
Confidence 3466789999998 77777 3444679999999877 32221 1 12 3455668877643221 1234
Q ss_pred hccCEEEEechhc--hHHHHHHhhccC
Q 022363 149 LKADLIVLNTAVA--GKWLDAVLKEDV 173 (298)
Q Consensus 149 ~~aDLVIaNT~v~--g~wl~~l~~~~~ 173 (298)
.++|+||....+. .+.+.+..+.+.
T Consensus 69 ~~~D~VV~SpGi~~~~p~~~~a~~~gi 95 (488)
T PRK03369 69 ADYALVVTSPGFRPTAPVLAAAAAAGV 95 (488)
T ss_pred hcCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 5789999999875 445555544444
No 98
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=73.38 E-value=19 Score=36.82 Aligned_cols=89 Identities=20% Similarity=0.280 Sum_probs=62.4
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhh
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTAL 149 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~ 149 (298)
.|. +|+|+++. |+.|| +.+|+.|++.|++|.+.=.+.-+. + +...++..-++.+....+.. ....
T Consensus 4 ~~~-~~kv~V~G--LG~sG-----~a~a~~L~~~G~~v~v~D~~~~~~-~----~~~~~~~~~~i~~~~g~~~~--~~~~ 68 (448)
T COG0771 4 DFQ-GKKVLVLG--LGKSG-----LAAARFLLKLGAEVTVSDDRPAPE-G----LAAQPLLLEGIEVELGSHDD--EDLA 68 (448)
T ss_pred ccc-CCEEEEEe--ccccc-----HHHHHHHHHCCCeEEEEcCCCCcc-c----hhhhhhhccCceeecCccch--hccc
Confidence 355 99999998 57777 788999999999988876443221 1 11234455688888765555 3367
Q ss_pred ccCEEEEechhc--hHHHHHHhhccC
Q 022363 150 KADLIVLNTAVA--GKWLDAVLKEDV 173 (298)
Q Consensus 150 ~aDLVIaNT~v~--g~wl~~l~~~~~ 173 (298)
++|+||.|=-+. .+++.+..+..+
T Consensus 69 ~~d~vV~SPGi~~~~p~v~~A~~~gi 94 (448)
T COG0771 69 EFDLVVKSPGIPPTHPLVEAAKAAGI 94 (448)
T ss_pred cCCEEEECCCCCCCCHHHHHHHHcCC
Confidence 899999998876 567777764454
No 99
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=73.16 E-value=34 Score=32.05 Aligned_cols=90 Identities=23% Similarity=0.216 Sum_probs=55.7
Q ss_pred CCccccc-cccEEEEEeccCCCCCchHHHHHHHHHHHhC-C-CeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhch
Q 022363 66 SSPLSFM-KSKLVLLVSHELSLSGGPLLLMELAFLLRGV-G-TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ 142 (298)
Q Consensus 66 ~~~~~f~-~~KkILLISHELS~TGAPLlLleLA~~Lkq~-G-~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~ 142 (298)
+.+..|. +++.|+|++- +.+|=--.+..||.++... | ..|.++....- ..-.+..|..--...|+++......
T Consensus 185 ~~~~~~~~~~~vi~~vGp--tGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~--r~~a~eql~~~~~~~~~p~~~~~~~ 260 (282)
T TIGR03499 185 PEEDEILEQGGVIALVGP--TGVGKTTTLAKLAARFVLEHGNKKVALITTDTY--RIGAVEQLKTYAKILGVPVKVARDP 260 (282)
T ss_pred CccccccCCCeEEEEECC--CCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc--chhHHHHHHHHHHHhCCceeccCCH
Confidence 3444555 4566777764 8889999999999999876 5 89999984421 0001112222222237777544332
Q ss_pred hH----HHhhhccCEEEEech
Q 022363 143 ET----INTALKADLIVLNTA 159 (298)
Q Consensus 143 ~~----i~~A~~aDLVIaNT~ 159 (298)
.. +..+.++|+|++.|+
T Consensus 261 ~~l~~~l~~~~~~d~vliDt~ 281 (282)
T TIGR03499 261 KELRKALDRLRDKDLILIDTA 281 (282)
T ss_pred HHHHHHHHHccCCCEEEEeCC
Confidence 22 334567999999986
No 100
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.49 E-value=17 Score=37.49 Aligned_cols=118 Identities=16% Similarity=0.215 Sum_probs=80.5
Q ss_pred CccccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh-------
Q 022363 67 SPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA------- 139 (298)
Q Consensus 67 ~~~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~------- 139 (298)
+++.+-|+|.=++..-=|..+|-.-..--||.+++..|..+.+++...= ----+.-|...-.+.+||++-.
T Consensus 92 ~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTF--RagAfDQLkqnA~k~~iP~ygsyte~dpv 169 (483)
T KOG0780|consen 92 SALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTF--RAGAFDQLKQNATKARVPFYGSYTEADPV 169 (483)
T ss_pred cccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeeccc--ccchHHHHHHHhHhhCCeeEecccccchH
Confidence 6788889998888888899999999999999999999999999994321 1122345666677779999843
Q ss_pred ----hchhHHHhhhccCEEEEechhch----HHHHHHhhccCCCCCCceEEEeeecc
Q 022363 140 ----KGQETINTALKADLIVLNTAVAG----KWLDAVLKEDVPRVLPNVLWWIHEMR 188 (298)
Q Consensus 140 ----k~~~~i~~A~~aDLVIaNT~v~g----~wl~~l~~~~~p~~~~pVIWWIHE~r 188 (298)
.+-+.|+ -.+||+||+-|.--. +..+++.+=. ....|--|-++.+.-
T Consensus 170 ~ia~egv~~fK-ke~fdvIIvDTSGRh~qe~sLfeEM~~v~-~ai~Pd~vi~VmDas 224 (483)
T KOG0780|consen 170 KIASEGVDRFK-KENFDVIIVDTSGRHKQEASLFEEMKQVS-KAIKPDEIIFVMDAS 224 (483)
T ss_pred HHHHHHHHHHH-hcCCcEEEEeCCCchhhhHHHHHHHHHHH-hhcCCCeEEEEEecc
Confidence 1222333 569999999997432 2233332111 123455566777765
No 101
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=72.31 E-value=23 Score=35.09 Aligned_cols=80 Identities=14% Similarity=0.171 Sum_probs=49.4
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc--CCceeehhchhHHH--
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR--GVQVISAKGQETIN-- 146 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~r--gI~v~~~k~~~~i~-- 146 (298)
+.+||++.++. .|-.+..+++.|.+.|.+++.+....+. .+.-.-|++...+. ++.++.+.....+.
T Consensus 297 ~l~gkrv~v~g-------~~~~~~~l~~~L~elG~~~~~v~~~~~~--~~~~~~l~~~~~~~~~~~~v~~~~d~~e~~~~ 367 (429)
T cd03466 297 YNFGRKAAIYG-------EPDFVVAITRFVLENGMVPVLIATGSES--KKLKEKLEEDLKEYVEKCVILDGADFFDIESY 367 (429)
T ss_pred hcCCCEEEEEc-------CHHHHHHHHHHHHHCCCEEEEEEeCCCC--hHHHHHHHHHHHhcCCceEEEeCCCHHHHHHH
Confidence 45899997765 3778999999999999998666643332 22211122223332 33344443333333
Q ss_pred -hhhccCEEEEech
Q 022363 147 -TALKADLIVLNTA 159 (298)
Q Consensus 147 -~A~~aDLVIaNT~ 159 (298)
...++|++|.|+-
T Consensus 368 l~~~~~dliiG~s~ 381 (429)
T cd03466 368 AKELKIDVLIGNSY 381 (429)
T ss_pred HHhcCCCEEEECch
Confidence 3468999999997
No 102
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=71.31 E-value=17 Score=31.37 Aligned_cols=80 Identities=18% Similarity=0.148 Sum_probs=49.2
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccC--CCCchhhhhhhHHHHHHcCCceeehhchhHH-Hhhh
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK--PSEEDEVIYSLEHKMWDRGVQVISAKGQETI-NTAL 149 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~--G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i-~~A~ 149 (298)
+|++|.+|++ . .+. +.-.++..|...|.++.+++-++ =+...+++...++.+++.|.++.-. ..+ +.+.
T Consensus 1 ~gl~i~~vGD-~-~~r---v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~---~~~~e~l~ 72 (158)
T PF00185_consen 1 KGLKIAYVGD-G-HNR---VAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITIT---DDIEEALK 72 (158)
T ss_dssp TTEEEEEESS-T-TSH---HHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEE---SSHHHHHT
T ss_pred CCCEEEEECC-C-CCh---HHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEE---eCHHHhcC
Confidence 6899999995 3 222 44455666777799977777443 1112245444555566666544432 123 3577
Q ss_pred ccCEEEEechh
Q 022363 150 KADLIVLNTAV 160 (298)
Q Consensus 150 ~aDLVIaNT~v 160 (298)
++|.|+..+..
T Consensus 73 ~aDvvy~~~~~ 83 (158)
T PF00185_consen 73 GADVVYTDRWQ 83 (158)
T ss_dssp T-SEEEEESSS
T ss_pred CCCEEEEcCcc
Confidence 99999999997
No 103
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=71.11 E-value=24 Score=38.87 Aligned_cols=106 Identities=22% Similarity=0.218 Sum_probs=66.1
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH--
Q 022363 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-- 146 (298)
Q Consensus 69 ~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~-- 146 (298)
....+||++.+.+ .|-....+++.|++.|.+|+....+....++.- . ...+...+..++.+.....+.
T Consensus 315 ~~~L~GKrv~i~~-------g~~~~~~la~~l~elGmevv~~g~~~~~~~d~~--~-~~~~~~~~~~vi~~~d~~el~~~ 384 (917)
T PRK14477 315 RARLEGKRVVLFT-------GGVKTWSMVNALRELGVEVLAAGTQNSTLEDFA--R-MKALMHKDAHIIEDTSTAGLLRV 384 (917)
T ss_pred HHHccCCEEEEEC-------CCchHHHHHHHHHHCCCEEEEEcCCCCCHHHHH--H-HHHhcCCCCEEEECCCHHHHHHH
Confidence 4578999999853 445678899999999999988665544321111 1 223334466676664343333
Q ss_pred -hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc
Q 022363 147 -TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK 193 (298)
Q Consensus 147 -~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~ 193 (298)
...+.||+|.|+-. +++. .|.++ |.+-+.|+-++-|..
T Consensus 385 i~~~~pDLlig~~~~--~~~a--~k~gi-----P~~~~~~~~~~p~~G 423 (917)
T PRK14477 385 MREKMPDLIVAGGKT--KFLA--LKTRT-----PFLDINHGRSHPYAG 423 (917)
T ss_pred HHhcCCCEEEecCch--hhHH--HHcCC-----CeEEccCCccCCccc
Confidence 24599999998863 3332 12344 777787776655543
No 104
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=70.87 E-value=18 Score=35.59 Aligned_cols=73 Identities=19% Similarity=0.328 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhccCEEEEechhc--hHHHHHHh
Q 022363 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVA--GKWLDAVL 169 (298)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~aDLVIaNT~v~--g~wl~~l~ 169 (298)
=|.-||++|++.|++|.+.=. +. .. ...+++.+.|+++........ ...++|+||...++. .+.+....
T Consensus 11 gm~~la~~l~~~G~~V~~~D~-~~--~~----~~~~~l~~~gi~~~~~~~~~~--~~~~~d~vV~SpgI~~~~~~~~~a~ 81 (448)
T TIGR01081 11 FMGGLAMIAKQLGHEVTGSDA-NV--YP----PMSTQLEAQGIEIIEGFDAAQ--LEPKPDLVVIGNAMKRGNPCVEAVL 81 (448)
T ss_pred hHHHHHHHHHhCCCEEEEECC-CC--Cc----HHHHHHHHCCCEEeCCCCHHH--CCCCCCEEEECCCCCCCCHHHHHHH
Confidence 577899999999999865221 11 11 223456667999986433322 234799999999985 45666665
Q ss_pred hccC
Q 022363 170 KEDV 173 (298)
Q Consensus 170 ~~~~ 173 (298)
+.+.
T Consensus 82 ~~~i 85 (448)
T TIGR01081 82 NLNL 85 (448)
T ss_pred HCCC
Confidence 4444
No 105
>PLN02949 transferase, transferring glycosyl groups
Probab=70.73 E-value=27 Score=35.14 Aligned_cols=40 Identities=13% Similarity=-0.036 Sum_probs=31.7
Q ss_pred EEEEEeccCCCC-CchHHHHHHHHHHHhCCC--eEEEEeccCC
Q 022363 76 LVLLVSHELSLS-GGPLLLMELAFLLRGVGT--KVNWITIQKP 115 (298)
Q Consensus 76 kILLISHELS~T-GAPLlLleLA~~Lkq~G~--~V~vL~~~~G 115 (298)
+|.|+==+++-. ||=-+|.+.+..|.+.|. +|++-++...
T Consensus 35 ~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d 77 (463)
T PLN02949 35 AVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHD 77 (463)
T ss_pred EEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCC
Confidence 566665688666 999999999999999988 6777776644
No 106
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=70.72 E-value=44 Score=35.85 Aligned_cols=173 Identities=16% Similarity=0.169 Sum_probs=94.7
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc---CCcee--eh-hchhHHH
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR---GVQVI--SA-KGQETIN 146 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~r---gI~v~--~~-k~~~~i~ 146 (298)
+-.+|=.||||+.-.--=-++.++-+++-..-+||....+. ++..+. +.+.+.-. -++.. ++ ..-++|.
T Consensus 258 ~rlRvGylS~dlr~Havg~l~~~v~e~hDRdkfEvfay~~g-~~~~da----l~~rI~a~~~~~~~~~~~dd~e~a~~I~ 332 (620)
T COG3914 258 KRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLG-PPHTDA----LQERISAAVEKWYPIGRMDDAEIANAIR 332 (620)
T ss_pred cceeEEEeccccccchHHHHHHHHHHHhchhheEEEEEecC-CCCchh----HHHHHHHhhhheeccCCcCHHHHHHHHH
Confidence 55789999999988755568888888888878999888854 333333 34444433 23333 12 2223344
Q ss_pred hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeecccccccccccccccc--ccccccccHHHHHHHHHhcccc
Q 022363 147 TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPL--VAGAMIDSHVTAEYWKNRTRER 224 (298)
Q Consensus 147 ~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~l~~vkhLp~--v~~~~~~S~AtA~yw~~r~~~~ 224 (298)
.+++|..|-=+.....---+++ .+.| .|=.|.|+ .|+.---..+... .-++|++ ...-+||+++-
T Consensus 333 -~d~IdILvDl~g~T~d~r~~v~-A~Rp--APiqvswl-----Gy~aT~g~p~~DY~I~D~y~vP-p~ae~yysEkl--- 399 (620)
T COG3914 333 -TDGIDILVDLDGHTVDTRCQVF-AHRP--APIQVSWL-----GYPATTGSPNMDYFISDPYTVP-PTAEEYYSEKL--- 399 (620)
T ss_pred -hcCCeEEEeccCceeccchhhh-hcCC--CceEEeec-----ccccccCCCcceEEeeCceecC-chHHHHHHHHH---
Confidence 5677755533222222122333 2333 33357887 7775111112222 2247777 66667887654
Q ss_pred cccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecc
Q 022363 225 LRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS 278 (298)
Q Consensus 225 ~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~s 278 (298)
++||++|.- +|...- +-=.=-|.++|||+|.++|+..|-
T Consensus 400 --~RLp~cy~p----~d~~~~---------v~p~~sR~~lglp~~avVf~c~~n 438 (620)
T COG3914 400 --WRLPQCYQP----VDGFEP---------VTPPPSRAQLGLPEDAVVFCCFNN 438 (620)
T ss_pred --HhcccccCC----CCCccc---------CCCCcchhhcCCCCCeEEEEecCC
Confidence 344433321 111111 001123678999999999998874
No 107
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=69.76 E-value=37 Score=31.92 Aligned_cols=85 Identities=25% Similarity=0.257 Sum_probs=57.1
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc-----h---hHH
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG-----Q---ETI 145 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~-----~---~~i 145 (298)
.+.|.|++ .+..|=.-....||..|++.|..|.++...-- ...-+..|..-..++|++++.... . +.+
T Consensus 72 ~~vi~l~G--~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~--r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 72 PNVILFVG--VNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF--RAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CeEEEEEC--CCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC--CHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 35566664 78889999999999999999999999984421 011122445555667888874321 1 112
Q ss_pred H--hhhccCEEEEechhch
Q 022363 146 N--TALKADLIVLNTAVAG 162 (298)
Q Consensus 146 ~--~A~~aDLVIaNT~v~g 162 (298)
. ...++|+||+.|.-..
T Consensus 148 ~~~~~~~~D~ViIDT~G~~ 166 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGRL 166 (272)
T ss_pred HHHHHCCCCEEEEeCCCCC
Confidence 2 2457999999999654
No 108
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=68.65 E-value=11 Score=40.24 Aligned_cols=82 Identities=26% Similarity=0.338 Sum_probs=55.8
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC----CchhhhhhhHHHHHHcCCceeehhchhHHH--
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS----EEDEVIYSLEHKMWDRGVQVISAKGQETIN-- 146 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~----~~g~v~~~L~~kll~rgI~v~~~k~~~~i~-- 146 (298)
.+|++++| |+-++-+|+|..|++.|.+|.++...... .+.+.-..+.+.+.++||++.......++.
T Consensus 139 ~~k~vvVV-------GgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~ 211 (785)
T TIGR02374 139 RFKKAAVI-------GGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGA 211 (785)
T ss_pred cCCeEEEE-------CCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcC
Confidence 46788887 66678899999999999999988733221 123334456778888899998664322221
Q ss_pred -----------hhhccCEEEEechhc
Q 022363 147 -----------TALKADLIVLNTAVA 161 (298)
Q Consensus 147 -----------~A~~aDLVIaNT~v~ 161 (298)
....+|+||.-+-+.
T Consensus 212 ~~~~~v~~~dG~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 212 TKADRIRFKDGSSLEADLIVMAAGIR 237 (785)
T ss_pred CceEEEEECCCCEEEcCEEEECCCCC
Confidence 123689999877654
No 109
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=68.58 E-value=1.1e+02 Score=29.29 Aligned_cols=175 Identities=11% Similarity=0.069 Sum_probs=80.0
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCC---eEEEEe--ccCCCCchhhhhhhHHHHHHcCCceeehh--------
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGT---KVNWIT--IQKPSEEDEVIYSLEHKMWDRGVQVISAK-------- 140 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~---~V~vL~--~~~G~~~g~v~~~L~~kll~rgI~v~~~k-------- 140 (298)
.||||++|=+. .+|-=-+--.|...|.+.|. ++.++= ...++.-+.++.....++.++.-......
T Consensus 5 ~~~vlil~~~~-G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~Y~~~~~~~p~~y~~~y~~~~~~~ 83 (391)
T PRK13608 5 NKKILIITGSF-GNGHMQVTQSIVNQLNDMNLDHLSVIEHDLFMEAHPILTSICKKWYINSFKYFRNMYKGFYYSRPDKL 83 (391)
T ss_pred CceEEEEECCC-CchHHHHHHHHHHHHHhhCCCCceEEEeehHHhcCchHHHHHHHHHHHHHHHhHHHHHHHHHcCchhh
Confidence 47899999333 33554555667777876653 444322 22222123333333334433321111000
Q ss_pred --------chhHH-H--hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccccccccccccccccccc
Q 022363 141 --------GQETI-N--TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID 209 (298)
Q Consensus 141 --------~~~~i-~--~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~l~~vkhLp~v~~~~~~ 209 (298)
....+ + ...++|+|+. |.- ...+..+. ....... |++.++++-..+-.-+ -+.+-.+.+.
T Consensus 84 ~~~~~~~~~~~~l~~~l~~~kPDvVi~-~~p-~~~~~~l~-~~~~~~i-P~~~v~td~~~~~~w~-----~~~~d~~~v~ 154 (391)
T PRK13608 84 DKCFYKYYGLNKLINLLIKEKPDLILL-TFP-TPVMSVLT-EQFNINI-PVATVMTDYRLHKNWI-----TPYSTRYYVA 154 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCEEEE-CCc-HHHHHHHH-HhcCCCC-CEEEEeCCCCcccccc-----cCCCCEEEEC
Confidence 00111 1 2358999987 432 22233222 2111122 7877766643221111 1222234455
Q ss_pred cHHHHHHHHHhcccccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCE
Q 022363 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDL 271 (298)
Q Consensus 210 S~AtA~yw~~r~~~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddv 271 (298)
|+.+.+++..+--++.+|.. +.....+...+ ...++..|+++|+++|+-
T Consensus 155 s~~~~~~l~~~gi~~~ki~v-----~GiPv~~~f~~--------~~~~~~~~~~~~l~~~~~ 203 (391)
T PRK13608 155 TKETKQDFIDVGIDPSTVKV-----TGIPIDNKFET--------PIDQKQWLIDNNLDPDKQ 203 (391)
T ss_pred CHHHHHHHHHcCCCHHHEEE-----ECeecChHhcc--------cccHHHHHHHcCCCCCCC
Confidence 99999998765324344443 22222222221 012345677899987763
No 110
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=68.11 E-value=26 Score=35.83 Aligned_cols=79 Identities=10% Similarity=0.115 Sum_probs=49.1
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHH-hCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH--
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLR-GVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-- 146 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~Lk-q~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~-- 146 (298)
.+..||++.+.. .|-....+++.|. +.|.+|+.+........+. +++.+.+.+..+........+.
T Consensus 289 ~~l~Gkrv~I~g-------d~~~a~~l~~~L~~ElGm~vv~~gt~~~~~~~~----~~~~~~~~~~~~~i~~D~~el~~~ 357 (519)
T PRK02910 289 TYLTGKRVFVFG-------DATHAVAAARILSDELGFEVVGAGTYLREDARW----VRAAAKEYGDEALITDDYLEVEDA 357 (519)
T ss_pred HhhcCCEEEEEc-------CcHHHHHHHHHHHHhcCCeEEEEecCCcchhHH----HHHHHHhcCCCeEEecCHHHHHHH
Confidence 577999987664 3678889999998 7999998776543322222 3444444443433211122222
Q ss_pred -hhhccCEEEEech
Q 022363 147 -TALKADLIVLNTA 159 (298)
Q Consensus 147 -~A~~aDLVIaNT~ 159 (298)
...+.|+||.|+-
T Consensus 358 i~~~~PdliiG~~~ 371 (519)
T PRK02910 358 IAEAAPELVLGTQM 371 (519)
T ss_pred HHhcCCCEEEEcch
Confidence 2458999999984
No 111
>PRK10785 maltodextrin glucosidase; Provisional
Probab=67.73 E-value=72 Score=33.29 Aligned_cols=124 Identities=16% Similarity=0.267 Sum_probs=72.2
Q ss_pred HHHHHHHHHhCCCeEEEEec--cCCC----------------CchhhhhhhHHHHHHcCCceeehhchhHHHhhhccCEE
Q 022363 93 LMELAFLLRGVGTKVNWITI--QKPS----------------EEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLI 154 (298)
Q Consensus 93 LleLA~~Lkq~G~~V~vL~~--~~G~----------------~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~aDLV 154 (298)
+.+=..+|++.|++.++|.- ..++ ++.+-..-|.+++-++||.|+.| +|
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD-------------~V 247 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLD-------------GV 247 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEE-------------EC
Confidence 45566999999999999981 1111 23345566777777888888866 44
Q ss_pred EEechhchHHHHHHhhcc---CCCCCCceE-EEeeeccccccccccccccc-------ccccccccc-HHHHHHHHHh-c
Q 022363 155 VLNTAVAGKWLDAVLKED---VPRVLPNVL-WWIHEMRGHYFKLDYVKHLP-------LVAGAMIDS-HVTAEYWKNR-T 221 (298)
Q Consensus 155 IaNT~v~g~wl~~l~~~~---~p~~~~pVI-WWIHE~r~~Yf~l~~vkhLp-------~v~~~~~~S-~AtA~yw~~r-~ 221 (298)
+--|....+|.+...+.. .....+|.- |+.+...+.|....-+.+|| .|.-.++++ ..+++||.+. +
T Consensus 248 ~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~ 327 (598)
T PRK10785 248 FNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPY 327 (598)
T ss_pred CCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCC
Confidence 444555566766543100 000112332 44444445554433344454 455566665 3588999986 6
Q ss_pred c-ccccccc
Q 022363 222 R-ERLRIKM 229 (298)
Q Consensus 222 ~-~~~~Ikl 229 (298)
+ |.-|+-.
T Consensus 328 giDG~RlDv 336 (598)
T PRK10785 328 NIDGWRLDV 336 (598)
T ss_pred CCcEEEEec
Confidence 7 7666654
No 112
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=67.72 E-value=38 Score=31.35 Aligned_cols=82 Identities=21% Similarity=0.324 Sum_probs=52.9
Q ss_pred HHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhch--------hHHH--hhhccCEEEEec-hhc
Q 022363 93 LMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ--------ETIN--TALKADLIVLNT-AVA 161 (298)
Q Consensus 93 LleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~--------~~i~--~A~~aDLVIaNT-~v~ 161 (298)
.+.||+.|++.|.+|..++...++ .+.+.+.+.|.+++.-... +..+ ...++|+||.-. -..
T Consensus 20 cl~LA~~l~~~g~~v~f~~~~~~~-------~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D~y~~~ 92 (279)
T TIGR03590 20 CLTLARALHAQGAEVAFACKPLPG-------DLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEKFDILIVDHYGLD 92 (279)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCH-------HHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 578999999999999999966542 3467888899988733211 1122 233789988866 345
Q ss_pred hHHHHHHhhccCCCCCCceEEEeeec
Q 022363 162 GKWLDAVLKEDVPRVLPNVLWWIHEM 187 (298)
Q Consensus 162 g~wl~~l~~~~~p~~~~pVIWWIHE~ 187 (298)
..|...+. ... +.+-.|=+.
T Consensus 93 ~~~~~~~k-~~~-----~~l~~iDD~ 112 (279)
T TIGR03590 93 ADWEKLIK-EFG-----RKILVIDDL 112 (279)
T ss_pred HHHHHHHH-HhC-----CeEEEEecC
Confidence 66766653 332 344455554
No 113
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=67.62 E-value=14 Score=29.46 Aligned_cols=57 Identities=23% Similarity=0.301 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhccCEEEEechhchHHHHH
Q 022363 94 MELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDA 167 (298)
Q Consensus 94 leLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~aDLVIaNT~v~g~wl~~ 167 (298)
.|....|++.|.++.++++....... .+.+++.+.|+++-+ |-|+...-+++.|+.+
T Consensus 20 ~e~l~~L~~~g~~~~~lTNns~~s~~----~~~~~L~~~Gi~~~~-------------~~i~ts~~~~~~~l~~ 76 (101)
T PF13344_consen 20 VEALDALRERGKPVVFLTNNSSRSRE----EYAKKLKKLGIPVDE-------------DEIITSGMAAAEYLKE 76 (101)
T ss_dssp HHHHHHHHHTTSEEEEEES-SSS-HH----HHHHHHHHTTTT--G-------------GGEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCHH----HHHHHHHhcCcCCCc-------------CEEEChHHHHHHHHHh
Confidence 57889999999999999977543212 457888888988533 3456666666666664
No 114
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=67.48 E-value=22 Score=34.29 Aligned_cols=88 Identities=20% Similarity=0.326 Sum_probs=56.4
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC----CCchhhhhhhHHHHHHcCCceeehhchhHHH--
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP----SEEDEVIYSLEHKMWDRGVQVISAKGQETIN-- 146 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G----~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~-- 146 (298)
.+|+|++| |+-..-+|+|..|++.|.+|.++..... ....++...+++.+.++||++........+.
T Consensus 136 ~~~~vvVi-------GgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~ 208 (427)
T TIGR03385 136 KVENVVII-------GGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGE 208 (427)
T ss_pred CCCeEEEE-------CCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecC
Confidence 46888887 3334578999999999999999884432 1234566667888888899987542111111
Q ss_pred ---------hhhccCEEEEechhc--hHHHHH
Q 022363 147 ---------TALKADLIVLNTAVA--GKWLDA 167 (298)
Q Consensus 147 ---------~A~~aDLVIaNT~v~--g~wl~~ 167 (298)
....+|.||.-|-.- ..+++.
T Consensus 209 ~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~ 240 (427)
T TIGR03385 209 ERVKVFTSGGVYQADMVILATGIKPNSELAKD 240 (427)
T ss_pred CCEEEEcCCCEEEeCEEEECCCccCCHHHHHh
Confidence 124688888665443 244443
No 115
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=66.88 E-value=17 Score=28.08 Aligned_cols=55 Identities=22% Similarity=0.219 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee--ehh---chh-HHH--hhhccCEEEEech
Q 022363 93 LMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI--SAK---GQE-TIN--TALKADLIVLNTA 159 (298)
Q Consensus 93 LleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~--~~k---~~~-~i~--~A~~aDLVIaNT~ 159 (298)
++++++.|.+.|+++.... | ..+-+.+.|+++- ..+ +.. ..+ ...++|+||.++-
T Consensus 2 ~~~~~~~l~~lG~~i~AT~---g---------Ta~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~ 64 (90)
T smart00851 2 LVELAKRLAELGFELVATG---G---------TAKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLY 64 (90)
T ss_pred HHHHHHHHHHCCCEEEEcc---H---------HHHHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCC
Confidence 5689999999999987544 2 2445666798763 211 112 222 3679999998763
No 116
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.55 E-value=31 Score=34.47 Aligned_cols=87 Identities=13% Similarity=0.068 Sum_probs=52.7
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhcc
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~a 151 (298)
+++|+|+++. ++.+|- ..|++|++.|.+|.+.-.+...+..+ ..++.+ ++..+...+.. ....++
T Consensus 6 ~~~~~v~v~G--~G~sG~-----~~~~~l~~~g~~v~~~d~~~~~~~~~-----~~~l~~-~~~~~~~~~~~--~~~~~~ 70 (468)
T PRK04690 6 LEGRRVALWG--WGREGR-----AAYRALRAHLPAQALTLFCNAVEARE-----VGALAD-AALLVETEASA--QRLAAF 70 (468)
T ss_pred cCCCEEEEEc--cchhhH-----HHHHHHHHcCCEEEEEcCCCcccchH-----HHHHhh-cCEEEeCCCCh--HHccCC
Confidence 5689999997 467775 56788999999987744332211111 124433 44444332221 224689
Q ss_pred CEEEEechhc--hHHHHHHhhccC
Q 022363 152 DLIVLNTAVA--GKWLDAVLKEDV 173 (298)
Q Consensus 152 DLVIaNT~v~--g~wl~~l~~~~~ 173 (298)
|+||.+..+. .+.+.+..+.+.
T Consensus 71 d~vV~SpgI~~~~p~~~~a~~~~i 94 (468)
T PRK04690 71 DVVVKSPGISPYRPEALAAAARGT 94 (468)
T ss_pred CEEEECCCCCCCCHHHHHHHHcCC
Confidence 9999999984 566666654444
No 117
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=66.08 E-value=18 Score=34.31 Aligned_cols=82 Identities=22% Similarity=0.333 Sum_probs=54.3
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC----CchhhhhhhHHHHHHcCCceeehhchhHH---
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS----EEDEVIYSLEHKMWDRGVQVISAKGQETI--- 145 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~----~~g~v~~~L~~kll~rgI~v~~~k~~~~i--- 145 (298)
.+|+|++|. +-..-+|+|..|.+.|.+|.++...... ...+....+.+.+.++|+.+........+
T Consensus 140 ~~~~vvViG-------gG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~ 212 (377)
T PRK04965 140 DAQRVLVVG-------GGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKT 212 (377)
T ss_pred cCCeEEEEC-------CCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEcc
Confidence 467888874 3346789999999999999999844321 12344456778888889988754211111
Q ss_pred ------H----hhhccCEEEEechhc
Q 022363 146 ------N----TALKADLIVLNTAVA 161 (298)
Q Consensus 146 ------~----~A~~aDLVIaNT~v~ 161 (298)
. ....+|+||.-|-..
T Consensus 213 ~~~~~v~~~~g~~i~~D~vI~a~G~~ 238 (377)
T PRK04965 213 DSGIRATLDSGRSIEVDAVIAAAGLR 238 (377)
T ss_pred CCEEEEEEcCCcEEECCEEEECcCCC
Confidence 1 123689999887764
No 118
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=65.92 E-value=58 Score=30.94 Aligned_cols=86 Identities=19% Similarity=0.304 Sum_probs=58.8
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH----hh
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN----TA 148 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~----~A 148 (298)
++.++.|++- +.+|-..++..++..+.+.|..|-++....- .-..+.-+.......|+++........+. .+
T Consensus 74 ~~~~i~~~G~--~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~--ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l 149 (270)
T PRK06731 74 EVQTIALIGP--TGVGKTTTLAKMAWQFHGKKKTVGFITTDHS--RIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYF 149 (270)
T ss_pred CCCEEEEECC--CCCcHHHHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHH
Confidence 5678999987 8889999999999999888888888875422 11122334444444588887654433332 12
Q ss_pred ---hccCEEEEechhch
Q 022363 149 ---LKADLIVLNTAVAG 162 (298)
Q Consensus 149 ---~~aDLVIaNT~v~g 162 (298)
.++|+||+.|.-..
T Consensus 150 ~~~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 150 KEEARVDYILIDTAGKN 166 (270)
T ss_pred HhcCCCCEEEEECCCCC
Confidence 37999999999654
No 119
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=65.48 E-value=22 Score=32.82 Aligned_cols=58 Identities=24% Similarity=0.345 Sum_probs=43.1
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEE---EeccCCCCchhhhhhhHHHHHHcCCceeeh
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNW---ITIQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~v---L~~~~G~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
+.+|+||++| -|.-.||. ..+|.++.|++.|.+|.= +..++ .+..+.+.+.|+++.+=
T Consensus 109 ~~~G~kVvvV-EDViTTG~--Si~eai~~l~~~G~~V~gv~~ivDR~--------~~~~~~~~~~g~~~~sl 169 (201)
T COG0461 109 EVKGEKVVVV-EDVITTGG--SILEAVEALREAGAEVVGVAVIVDRQ--------SGAKEVLKEYGVKLVSL 169 (201)
T ss_pred CCCCCEEEEE-EecccCCH--hHHHHHHHHHHcCCeEEEEEEEEecc--------hhHHHHHHhcCCceEEE
Confidence 4479999888 56777887 678999999999999653 33443 14467788889888754
No 120
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=65.07 E-value=24 Score=33.98 Aligned_cols=88 Identities=18% Similarity=0.345 Sum_probs=57.9
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC----CCchhhhhhhHHHHHHcCCceeehhchhHHH--
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP----SEEDEVIYSLEHKMWDRGVQVISAKGQETIN-- 146 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G----~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~-- 146 (298)
++++|++| |+...-+|+|..|+..|.+|.++..... ....++...+++.+.++||.+........+.
T Consensus 148 ~~~~vvVv-------GgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~ 220 (444)
T PRK09564 148 EIKNIVII-------GAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGE 220 (444)
T ss_pred CCCEEEEE-------CCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecC
Confidence 35778877 4555788999999999999998864321 1345666677888888899887542222111
Q ss_pred ----------hhhccCEEEEechhc--hHHHHH
Q 022363 147 ----------TALKADLIVLNTAVA--GKWLDA 167 (298)
Q Consensus 147 ----------~A~~aDLVIaNT~v~--g~wl~~ 167 (298)
....+|.||..|-.. ..+++.
T Consensus 221 ~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~~ 253 (444)
T PRK09564 221 DKVEGVVTDKGEYEADVVIVATGVKPNTEFLED 253 (444)
T ss_pred CcEEEEEeCCCEEEcCEEEECcCCCcCHHHHHh
Confidence 123679888866653 345553
No 121
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=64.59 E-value=32 Score=26.92 Aligned_cols=44 Identities=30% Similarity=0.366 Sum_probs=34.0
Q ss_pred ccccccccE-EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 022363 68 PLSFMKSKL-VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (298)
Q Consensus 68 ~~~f~~~Kk-ILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (298)
|+.-+.... ++++| .+|..--+.+.++.+|+.|.+++.+++.++
T Consensus 47 ~~~~~~~~d~vi~is----~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 47 PLENLDPDDLVIIIS----YSGETRELIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp GGGGCSTTEEEEEEE----SSSTTHHHHHHHHHHHHTTSEEEEEESSTT
T ss_pred hcccccccceeEeee----ccccchhhhhhhHHHHhcCCeEEEEeCCCC
Confidence 444455555 44554 678888999999999999999999997765
No 122
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=64.08 E-value=25 Score=35.07 Aligned_cols=103 Identities=23% Similarity=0.206 Sum_probs=59.9
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH---
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN--- 146 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~--- 146 (298)
.+.+||++.+.. .|-....+++.|.+.|.+|..+....+. +.++++....+ +..|. ..+.
T Consensus 307 ~~l~Gkrvai~~-------~~~~~~~l~~~l~elGm~v~~~~~~~~~-------~~~~~~~~~~~-~~~D~--~~l~~~i 369 (432)
T TIGR01285 307 FFLGGKKVAIAA-------EPDLLAAWATFFTSMGAQIVAAVTTTGS-------PLLQKLPVETV-VIGDL--EDLEDLA 369 (432)
T ss_pred HhhCCCEEEEEc-------CHHHHHHHHHHHHHCCCEEEEEEeCCCC-------HHHHhCCcCcE-EeCCH--HHHHHHH
Confidence 467899997764 4557799999999999999988865542 11233322222 22332 2222
Q ss_pred hhhccCEEEEechhchHHHHHHhhccCCCC--CCceEEEeeeccccccc
Q 022363 147 TALKADLIVLNTAVAGKWLDAVLKEDVPRV--LPNVLWWIHEMRGHYFK 193 (298)
Q Consensus 147 ~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~--~~pVIWWIHE~r~~Yf~ 193 (298)
...++|++|.|+-. +++..= .++|.. .-||.-=+++-++.|..
T Consensus 370 ~~~~~dliig~s~~--k~~A~~--l~ip~ir~g~Pi~dr~~~~~~~~~G 414 (432)
T TIGR01285 370 CAAGADLLITNSHG--RALAQR--LALPLVRAGFPLFDQLGSQRRCRIG 414 (432)
T ss_pred hhcCCCEEEECcch--HHHHHH--cCCCEEEecCCccccccccccCeee
Confidence 23589999999963 444422 244433 22544445544444443
No 123
>PRK06114 short chain dehydrogenase; Provisional
Probab=64.01 E-value=53 Score=28.85 Aligned_cols=80 Identities=13% Similarity=0.202 Sum_probs=44.8
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--ee-h-hchhHHH-
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--IS-A-KGQETIN- 146 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v--~~-~-k~~~~i~- 146 (298)
+++|.+|+. +.+|+ +=.++|+.|.+.|++|.++..+... -...+.+++.+.+-++ +. | ...+.+.
T Consensus 6 ~~~k~~lVt----G~s~g--IG~~ia~~l~~~G~~v~~~~r~~~~----~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~ 75 (254)
T PRK06114 6 LDGQVAFVT----GAGSG--IGQRIAIGLAQAGADVALFDLRTDD----GLAETAEHIEAAGRRAIQIAADVTSKADLRA 75 (254)
T ss_pred CCCCEEEEE----CCCch--HHHHHHHHHHHCCCEEEEEeCCcch----HHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 678866554 22333 6678999999999998877643211 1123345555444222 21 1 2222222
Q ss_pred -------hhhccCEEEEechhc
Q 022363 147 -------TALKADLIVLNTAVA 161 (298)
Q Consensus 147 -------~A~~aDLVIaNT~v~ 161 (298)
.....|.+|.|..+.
T Consensus 76 ~~~~~~~~~g~id~li~~ag~~ 97 (254)
T PRK06114 76 AVARTEAELGALTLAVNAAGIA 97 (254)
T ss_pred HHHHHHHHcCCCCEEEECCCCC
Confidence 234679999888753
No 124
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=63.67 E-value=27 Score=30.51 Aligned_cols=59 Identities=25% Similarity=0.332 Sum_probs=40.6
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe--ccCCCCchhhhhhhHHHHHHcCCceeeh
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT--IQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~--~~~G~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
..+||++|+|= |.=.||+ -+.+.++.|++.|.+|.=+. -.++. +-.+++.+.|+|+..-
T Consensus 101 ~~~g~~VlIVD-Dvi~TG~--T~~~~~~~l~~~Ga~v~~~~~~vdr~~-------g~~~~l~~~gv~~~sl 161 (170)
T PRK13811 101 DVKGKRVLLVE-DVTTSGG--SALYGIEQLRAAGAVVDDVVTVVDREQ-------GAEELLAELGITLTPL 161 (170)
T ss_pred ccCCCEEEEEE-ecccccH--HHHHHHHHHHHCCCeEEEEEEEEECCc-------cHHHHHHhcCCcEEEE
Confidence 46899999885 4555666 57888999999999954333 22332 2246667789988754
No 125
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=63.21 E-value=21 Score=35.59 Aligned_cols=79 Identities=22% Similarity=0.233 Sum_probs=48.3
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc-------hh
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG-------QE 143 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~-------~~ 143 (298)
.+++|+|++. .+.+.|-+-..++.+.|++.|++|.++..+.. -.++.+..=+.+. |-+|+.+.. ..
T Consensus 3 ~l~~k~Illg---vTGsiaa~k~~~lv~~L~~~g~~V~vv~T~~A---~~fi~~~~l~~l~-~~~V~~~~~~~~~~~~~~ 75 (399)
T PRK05579 3 MLAGKRIVLG---VSGGIAAYKALELVRRLRKAGADVRVVMTEAA---KKFVTPLTFQALS-GNPVSTDLWDPAAEAAMG 75 (399)
T ss_pred CCCCCeEEEE---EeCHHHHHHHHHHHHHHHhCCCEEEEEECHhH---HHHHhHHHHHHhh-CCceEccccccccCCCcc
Confidence 4678888875 23333345568899999999999999996654 2333333211111 456665521 12
Q ss_pred HHHhhhccCEEEE
Q 022363 144 TINTALKADLIVL 156 (298)
Q Consensus 144 ~i~~A~~aDLVIa 156 (298)
-+..+..+|++++
T Consensus 76 hi~l~~~aD~~vV 88 (399)
T PRK05579 76 HIELAKWADLVLI 88 (399)
T ss_pred hhhcccccCEEEE
Confidence 3455667998885
No 126
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=62.55 E-value=17 Score=37.82 Aligned_cols=73 Identities=21% Similarity=0.210 Sum_probs=56.8
Q ss_pred CchHHHHHHHHHHHhCCCeEEEEeccCCC----CchhhhhhhHHHHHHcCCceeehhchhHHH---------------hh
Q 022363 88 GGPLLLMELAFLLRGVGTKVNWITIQKPS----EEDEVIYSLEHKMWDRGVQVISAKGQETIN---------------TA 148 (298)
Q Consensus 88 GAPLlLleLA~~Lkq~G~~V~vL~~~~G~----~~g~v~~~L~~kll~rgI~v~~~k~~~~i~---------------~A 148 (298)
|+-..+||.|..|+..+.+|.++..+... ...++-...++.+.++|++.......-++. ..
T Consensus 220 G~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~ 299 (478)
T KOG1336|consen 220 GGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKT 299 (478)
T ss_pred CchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCE
Confidence 78899999999999999999999976655 456666777888888899998664333222 45
Q ss_pred hccCEEEEechh
Q 022363 149 LKADLIVLNTAV 160 (298)
Q Consensus 149 ~~aDLVIaNT~v 160 (298)
..+|+||..+-+
T Consensus 300 l~adlvv~GiG~ 311 (478)
T KOG1336|consen 300 LEADLVVVGIGI 311 (478)
T ss_pred eccCeEEEeecc
Confidence 689999998864
No 127
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=62.20 E-value=1.3e+02 Score=27.58 Aligned_cols=65 Identities=12% Similarity=0.143 Sum_probs=33.9
Q ss_pred cccccHHHHHHHHHhcccccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecccC
Q 022363 206 AMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSMN 280 (298)
Q Consensus 206 ~~~~S~AtA~yw~~r~~~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~sv~ 280 (298)
+...|+...+++...--++.+|.. +.-..-|...+. -... ..+..|+.+|++++..++....+..
T Consensus 145 ~~~~s~~~~~~l~~~G~~~~kI~v-----ign~v~d~~~~~----~~~~-~~~~~~~~~~~~~~~~vlv~~~r~~ 209 (363)
T cd03786 145 HFAPTEEARRNLLQEGEPPERIFV-----VGNTMIDALLRL----LELA-KKELILELLGLLPKKYILVTLHRVE 209 (363)
T ss_pred ccCCCHHHHHHHHHcCCCcccEEE-----ECchHHHHHHHH----HHhh-ccchhhhhcccCCCCEEEEEeCCcc
Confidence 344588888887754224444442 322212333321 0111 1123467899998887776666643
No 128
>PRK14974 cell division protein FtsY; Provisional
Probab=61.94 E-value=64 Score=31.65 Aligned_cols=85 Identities=24% Similarity=0.264 Sum_probs=56.4
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc--------hhHH
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--------QETI 145 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~--------~~~i 145 (298)
.+.|+|++ .+.+|=--.+-.||..|++.|..|.++.+..- ...-..-|.......|++++...+ ...+
T Consensus 140 ~~vi~~~G--~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~--R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 140 PVVIVFVG--VNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF--RAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CeEEEEEc--CCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC--cHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 35667776 88899999999999999999999988774311 111112334444445888875421 1122
Q ss_pred H--hhhccCEEEEechhch
Q 022363 146 N--TALKADLIVLNTAVAG 162 (298)
Q Consensus 146 ~--~A~~aDLVIaNT~v~g 162 (298)
+ .+.++|+|++.|+-..
T Consensus 216 ~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCCEEEEECCCcc
Confidence 2 3467999999999653
No 129
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=61.87 E-value=1.2e+02 Score=29.03 Aligned_cols=126 Identities=12% Similarity=0.138 Sum_probs=61.7
Q ss_pred EeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh--hchhHHH---hhhccCEE
Q 022363 80 VSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA--KGQETIN---TALKADLI 154 (298)
Q Consensus 80 ISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~--k~~~~i~---~A~~aDLV 154 (298)
=.|=.|.. =-..+..|++.|++.+.++.++..--.+.+. .+.++....++.+..- .....+. ...++|+|
T Consensus 54 W~Ha~s~G-e~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~----~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd~v 128 (425)
T PRK05749 54 WFHAVSVG-ETRAAIPLIRALRKRYPDLPILVTTMTPTGS----ERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPKLV 128 (425)
T ss_pred EEEeCCHH-HHHHHHHHHHHHHHhCCCCcEEEeCCCccHH----HHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCCEE
Confidence 46777764 7788999999999987554443211111111 2334433334544321 1111222 24589999
Q ss_pred EEechhchHHHHHHhhccCCCCCCceEEEeeec-cc---cc--cc------cccccccccccccccccHHHHHHHHHh
Q 022363 155 VLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEM-RG---HY--FK------LDYVKHLPLVAGAMIDSHVTAEYWKNR 220 (298)
Q Consensus 155 IaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~-r~---~Y--f~------l~~vkhLp~v~~~~~~S~AtA~yw~~r 220 (298)
+...- .-|...+..-+ .... |++-+=|-+ +. .| +. +++++++..+ |+..++++++.
T Consensus 129 ~~~~~--~~~~~~l~~~~-~~~i-p~vl~~~~~~~~s~~~~~~~~~~~r~~~~~~d~ii~~------S~~~~~~l~~~ 196 (425)
T PRK05749 129 IIMET--ELWPNLIAELK-RRGI-PLVLANARLSERSFKRYQKFKRFYRLLFKNIDLVLAQ------SEEDAERFLAL 196 (425)
T ss_pred EEEec--chhHHHHHHHH-HCCC-CEEEEeccCChhhHHHHHHHHHHHHHHHHhCCEEEEC------CHHHHHHHHHc
Confidence 86522 22333221111 1223 554332322 11 11 10 3445556666 99999999863
No 130
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=61.16 E-value=36 Score=32.69 Aligned_cols=81 Identities=21% Similarity=0.288 Sum_probs=53.5
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC----CchhhhhhhHHHHHHcCCceeehhchhHH---
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS----EEDEVIYSLEHKMWDRGVQVISAKGQETI--- 145 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~----~~g~v~~~L~~kll~rgI~v~~~k~~~~i--- 145 (298)
.+|+|++| |+-..-+|+|..|++.|.+|.++...... ...++...+.+.+.++||.+........+
T Consensus 143 ~~~~vvVi-------GgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~ 215 (396)
T PRK09754 143 PERSVVIV-------GAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDG 215 (396)
T ss_pred cCCeEEEE-------CCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcC
Confidence 36778777 44567889999999999999988743211 22344445777788889988855322211
Q ss_pred -----H----hhhccCEEEEechh
Q 022363 146 -----N----TALKADLIVLNTAV 160 (298)
Q Consensus 146 -----~----~A~~aDLVIaNT~v 160 (298)
. ....+|+||..+-+
T Consensus 216 ~~~~v~l~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 216 EKVELTLQSGETLQADVVIYGIGI 239 (396)
T ss_pred CEEEEEECCCCEEECCEEEECCCC
Confidence 1 12368999986654
No 131
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=60.94 E-value=67 Score=32.68 Aligned_cols=86 Identities=23% Similarity=0.250 Sum_probs=56.2
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc--------hhHH
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--------QETI 145 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~--------~~~i 145 (298)
...|+|++ ...+|=--....||.+|++.|..|.++.+..-. .-...-|.....+.|++++.... .+.+
T Consensus 95 p~vI~lvG--~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R--~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 95 PQTIMLVG--LQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR--PAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CeEEEEEC--CCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC--HHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 45677776 588899999999999999999999998854211 11111233333444888875421 1223
Q ss_pred HhhhccCEEEEechhchH
Q 022363 146 NTALKADLIVLNTAVAGK 163 (298)
Q Consensus 146 ~~A~~aDLVIaNT~v~g~ 163 (298)
+.+...|+||+.|+-...
T Consensus 171 ~~~~~~DvVIIDTAGr~~ 188 (437)
T PRK00771 171 EKFKKADVIIVDTAGRHA 188 (437)
T ss_pred HHhhcCCEEEEECCCccc
Confidence 345677999999995433
No 132
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=60.59 E-value=42 Score=31.88 Aligned_cols=82 Identities=23% Similarity=0.286 Sum_probs=52.7
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH-h
Q 022363 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-T 147 (298)
Q Consensus 69 ~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~-~ 147 (298)
....+||++++. |.|-..+.+++.|++.|.+|..+....+.+...- . ..++...+..++.+.....+. .
T Consensus 274 ~~~l~g~~~~i~-------~~~~~~~~~~~~l~e~G~~v~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~d~~~~~~~ 343 (399)
T cd00316 274 HEYLGGKKVAIF-------GDGDLLLALARFLLELGMEVVAAGTTFGHKADYE--R-REELLGEGTEVVDDGDLEELEEL 343 (399)
T ss_pred HHHhcCCEEEEE-------CCCcHHHHHHHHHHHCCCEEEEEEeCCCCHHHHH--H-HHHhcCCCCEEEeCCCHHHHHHH
Confidence 356789998664 3345777788999999999888874443211100 0 233555577777665555544 2
Q ss_pred --hhccCEEEEechh
Q 022363 148 --ALKADLIVLNTAV 160 (298)
Q Consensus 148 --A~~aDLVIaNT~v 160 (298)
-.++|++|.++-.
T Consensus 344 ~~~~~pdl~ig~~~~ 358 (399)
T cd00316 344 IRELKPDLIIGGSKG 358 (399)
T ss_pred HhhcCCCEEEECCcH
Confidence 2379999999864
No 133
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=60.54 E-value=36 Score=30.20 Aligned_cols=58 Identities=28% Similarity=0.371 Sum_probs=41.6
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEE---EEeccCCCCchhhhhhhHHHHHHcCCceeeh
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN---WITIQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~---vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
..+||+||+| .|.=.||. -+.+..+.|++.|.+++ ++..++. ...+++.+.|+++..-
T Consensus 110 ~~~g~~VliV-DDvi~tG~--Tl~~~~~~l~~~Ga~~v~~~vlv~~~~--------~~~~~~~~~g~~~~sl 170 (202)
T PRK00455 110 RLFGKRVLVV-EDVITTGG--SVLEAVEAIRAAGAEVVGVAVIVDRQS--------AAQEVFADAGVPLISL 170 (202)
T ss_pred CCCCCEEEEE-ecccCCcH--HHHHHHHHHHHcCCEEEEEEEEEECcc--------hHHHHHHhcCCcEEEE
Confidence 3469999999 77778888 67788999999998863 3334421 2245666779888754
No 134
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=59.88 E-value=28 Score=27.23 Aligned_cols=55 Identities=18% Similarity=0.296 Sum_probs=33.0
Q ss_pred HHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh-----hc-h-h----HHH--hhhccCEEEEech
Q 022363 93 LMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA-----KG-Q-E----TIN--TALKADLIVLNTA 159 (298)
Q Consensus 93 LleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~-----k~-~-~----~i~--~A~~aDLVIaNT~ 159 (298)
++++|+.|.+.|+++..-. +..+-|.+.||++..- .+ . . -.+ ...++|+||.|.-
T Consensus 2 ~~~~a~~l~~lG~~i~AT~------------gTa~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~ 69 (95)
T PF02142_consen 2 IVPLAKRLAELGFEIYATE------------GTAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPY 69 (95)
T ss_dssp HHHHHHHHHHTTSEEEEEH------------HHHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--
T ss_pred HHHHHHHHHHCCCEEEECh------------HHHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCC
Confidence 5789999999998877655 3356677789983311 11 1 1 112 3679998887654
No 135
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=59.64 E-value=73 Score=26.39 Aligned_cols=79 Identities=23% Similarity=0.293 Sum_probs=47.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhcc
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~a 151 (298)
.++|++++|+ +|+ .--..+..|.+.|..=+.+.++.. +-...|.+++....+....-. +.-....++
T Consensus 10 l~~~~vlviG-----aGg--~ar~v~~~L~~~g~~~i~i~nRt~----~ra~~l~~~~~~~~~~~~~~~--~~~~~~~~~ 76 (135)
T PF01488_consen 10 LKGKRVLVIG-----AGG--AARAVAAALAALGAKEITIVNRTP----ERAEALAEEFGGVNIEAIPLE--DLEEALQEA 76 (135)
T ss_dssp GTTSEEEEES-----SSH--HHHHHHHHHHHTTSSEEEEEESSH----HHHHHHHHHHTGCSEEEEEGG--GHCHHHHTE
T ss_pred cCCCEEEEEC-----CHH--HHHHHHHHHHHcCCCEEEEEECCH----HHHHHHHHHcCccccceeeHH--HHHHHHhhC
Confidence 5799999996 344 444567888899999555665642 112234444422234444332 212356799
Q ss_pred CEEEEechhchH
Q 022363 152 DLIVLNTAVAGK 163 (298)
Q Consensus 152 DLVIaNT~v~g~ 163 (298)
|+||.-|-+...
T Consensus 77 DivI~aT~~~~~ 88 (135)
T PF01488_consen 77 DIVINATPSGMP 88 (135)
T ss_dssp SEEEE-SSTTST
T ss_pred CeEEEecCCCCc
Confidence 999988887544
No 136
>PF09861 DUF2088: Domain of unknown function (DUF2088); InterPro: IPR018657 This domain, found in various hypothetical proteins, has no known function. ; PDB: 2YJG_B.
Probab=59.16 E-value=61 Score=29.59 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=26.6
Q ss_pred cccEEEEEeccCCCC-CchHHHHHHHHHHHhCCC---eEEEEe
Q 022363 73 KSKLVLLVSHELSLS-GGPLLLMELAFLLRGVGT---KVNWIT 111 (298)
Q Consensus 73 ~~KkILLISHELS~T-GAPLlLleLA~~Lkq~G~---~V~vL~ 111 (298)
.+|+|++|--|.+|. ..+++|=.+..+|+.+|. ++.++.
T Consensus 53 ~~~~V~Ivv~D~TRp~p~~~il~~ll~~L~~~Gv~~~~i~ii~ 95 (204)
T PF09861_consen 53 PGKRVAIVVDDITRPTPSDLILPALLEELEEAGVKDEDITIII 95 (204)
T ss_dssp T-SEEEEEEE-TTS---HHHHHHHHHHHHHT-T-TT-EEEEEE
T ss_pred CCCeEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCccCEEEEE
Confidence 359999999999998 334677778899999888 677665
No 137
>PRK10637 cysG siroheme synthase; Provisional
Probab=58.96 E-value=40 Score=33.89 Aligned_cols=71 Identities=15% Similarity=0.084 Sum_probs=45.6
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhcc
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~a 151 (298)
++||+||+|+ |+.+..=.+ +.|.+.|..|.+++ ++..+++ .+......+......++.. ...++
T Consensus 10 l~~~~vlvvG------gG~vA~rk~-~~ll~~ga~v~vis---p~~~~~~----~~l~~~~~i~~~~~~~~~~--dl~~~ 73 (457)
T PRK10637 10 LRDRDCLLVG------GGDVAERKA-RLLLDAGARLTVNA---LAFIPQF----TAWADAGMLTLVEGPFDES--LLDTC 73 (457)
T ss_pred cCCCEEEEEC------CCHHHHHHH-HHHHHCCCEEEEEc---CCCCHHH----HHHHhCCCEEEEeCCCChH--HhCCC
Confidence 6899999994 787775555 55666799999998 3333333 2222222455555544432 35788
Q ss_pred CEEEEec
Q 022363 152 DLIVLNT 158 (298)
Q Consensus 152 DLVIaNT 158 (298)
|+||+-|
T Consensus 74 ~lv~~at 80 (457)
T PRK10637 74 WLAIAAT 80 (457)
T ss_pred EEEEECC
Confidence 9999877
No 138
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=58.41 E-value=1.8e+02 Score=28.10 Aligned_cols=158 Identities=17% Similarity=0.178 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhC-CCeEEEEe-ccCCCCchhhhhhhHHHHHHcCCceeeh--------hch----------hHHH---h
Q 022363 91 LLLMELAFLLRGV-GTKVNWIT-IQKPSEEDEVIYSLEHKMWDRGVQVISA--------KGQ----------ETIN---T 147 (298)
Q Consensus 91 LlLleLA~~Lkq~-G~~V~vL~-~~~G~~~g~v~~~L~~kll~rgI~v~~~--------k~~----------~~i~---~ 147 (298)
+-|.-+.+.|++. +.+++++. +++-++ +. ......+.+.|.++..+ .++ ..+. .
T Consensus 14 iklapv~~~l~~~~~~~~~lv~tGqH~~~--~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (365)
T TIGR03568 14 GLLRPLLKALQDDPDLELQLIVTGMHLSP--EY-GNTVNEIEKDGFDIDEKIEILLDSDSNAGMAKSMGLTIIGFSDAFE 90 (365)
T ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCCCh--hh-ccHHHHHHHcCCCCCCccccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4456677888874 78877777 665321 11 01234555454432111 111 1111 3
Q ss_pred hhccCEEEE----echhchHHHHHHhhccCCCCCCceEEEeeecccccc--c------cccccccccccccccccHHHHH
Q 022363 148 ALKADLIVL----NTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF--K------LDYVKHLPLVAGAMIDSHVTAE 215 (298)
Q Consensus 148 A~~aDLVIa----NT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf--~------l~~vkhLp~v~~~~~~S~AtA~ 215 (298)
..+.|+|++ ||..++.....++ +. ||+ ++|+..+.|= + .++..|++++ +-..+.
T Consensus 91 ~~~Pd~vlv~GD~~~~la~alaA~~~--~I-----Pv~-HveaG~rs~~~~eE~~r~~i~~la~l~f~------~t~~~~ 156 (365)
T TIGR03568 91 RLKPDLVVVLGDRFEMLAAAIAAALL--NI-----PIA-HIHGGEVTEGAIDESIRHAITKLSHLHFV------ATEEYR 156 (365)
T ss_pred HhCCCEEEEeCCchHHHHHHHHHHHh--CC-----cEE-EEECCccCCCCchHHHHHHHHHHHhhccC------CCHHHH
Confidence 458899986 4455555555443 33 554 8898865441 1 2344455555 444444
Q ss_pred HHHHhcc-cccccccCCceEEEecC--cHHHHHHHHHHHHHHHhhHHHHHHhCCCC-CCEEEEEecc
Q 022363 216 YWKNRTR-ERLRIKMPDTYVVHLGN--SKELMEVAEDNVAKRVLREHVRESLGVRN-EDLLFAIINS 278 (298)
Q Consensus 216 yw~~r~~-~~~~Ikl~~~~vv~L~~--s~~L~~~a~~~va~~~lre~VR~~lGl~~-ddvlv~~~~s 278 (298)
....+.+ ++.+| +..|+ -|++.... .. .++.+++++|+++ ...++..+..
T Consensus 157 ~~L~~eg~~~~~i-------~~tG~~~iD~l~~~~-----~~-~~~~~~~~lgl~~~~~~vlvt~Hp 210 (365)
T TIGR03568 157 QRVIQMGEDPDRV-------FNVGSPGLDNILSLD-----LL-SKEELEEKLGIDLDKPYALVTFHP 210 (365)
T ss_pred HHHHHcCCCCCcE-------EEECCcHHHHHHhhh-----cc-CHHHHHHHhCCCCCCCEEEEEeCC
Confidence 4333333 33232 33333 34444421 11 3578889999974 3676666653
No 139
>PRK04155 chaperone protein HchA; Provisional
Probab=58.28 E-value=96 Score=29.78 Aligned_cols=49 Identities=16% Similarity=0.356 Sum_probs=34.1
Q ss_pred ccccccccEEEEEeccC---CC-------CCc-hHHHHHHHHHHHhCCCeEEEEeccCCC
Q 022363 68 PLSFMKSKLVLLVSHEL---SL-------SGG-PLLLMELAFLLRGVGTKVNWITIQKPS 116 (298)
Q Consensus 68 ~~~f~~~KkILLISHEL---S~-------TGA-PLlLleLA~~Lkq~G~~V~vL~~~~G~ 116 (298)
|-.|--|||||+|-=+. .+ ||- |.=++.-...|++.|++|.+.+..++.
T Consensus 43 ~~~~~~~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G~~ 102 (287)
T PRK04155 43 PKPYRGGKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSGNP 102 (287)
T ss_pred CCcCCCCCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCCCc
Confidence 34466688999886533 22 332 556667778999999999999965543
No 140
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=58.04 E-value=66 Score=26.39 Aligned_cols=65 Identities=20% Similarity=0.139 Sum_probs=40.3
Q ss_pred CCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh-----hc--hhHHHhhhccCEEEE
Q 022363 85 SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA-----KG--QETINTALKADLIVL 156 (298)
Q Consensus 85 S~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~-----k~--~~~i~~A~~aDLVIa 156 (298)
+.+++-+-..++.+.|++.|++|.++..+.+. . .+..+. ..+-++..+ .. ..-+.....+|++++
T Consensus 8 tGs~~~~~~~~~l~~L~~~g~~v~vv~S~~A~---~---~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~D~~vV 79 (129)
T PF02441_consen 8 TGSIAAYKAPDLLRRLKRAGWEVRVVLSPSAE---R---FVTPEG-LTGEPVYTDWDTWDRGDPAEHIELSRWADAMVV 79 (129)
T ss_dssp -SSGGGGGHHHHHHHHHTTTSEEEEEESHHHH---H---HSHHHG-HCCSCEECTHCTCSTTTTTCHHHHHHTESEEEE
T ss_pred ECHHHHHHHHHHHHHHhhCCCEEEEEECCcHH---H---Hhhhhc-cccchhhhccccCCCCCCcCcccccccCCEEEE
Confidence 34545555889999999999999999966541 1 222333 334556554 11 112334678999986
No 141
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=57.99 E-value=45 Score=32.42 Aligned_cols=59 Identities=20% Similarity=0.360 Sum_probs=43.9
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC---CchhhhhhhHHHHHHcCCceeeh
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS---EEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~---~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
.|++++| |+...-+|+|..|.+.|.+|.++...+.. ...++...+++.+.++||++...
T Consensus 158 ~~~v~Vi-------GgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~ 219 (441)
T PRK08010 158 PGHLGIL-------GGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILN 219 (441)
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeC
Confidence 4566665 56678999999999999999998743211 23556667788888889988854
No 142
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=57.85 E-value=83 Score=31.62 Aligned_cols=87 Identities=21% Similarity=0.156 Sum_probs=56.0
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHH--hCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhH----
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLR--GVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQET---- 144 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lk--q~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~---- 144 (298)
.-.|+.|+|++- +.+|=--.+..||..+. ..|..|.++....-- .+- ...|..-....|+++........
T Consensus 218 ~~~~~~i~~vGp--tGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r-~~a-~eqL~~~a~~~~vp~~~~~~~~~l~~~ 293 (424)
T PRK05703 218 LKQGGVVALVGP--TGVGKTTTLAKLAARYALLYGKKKVALITLDTYR-IGA-VEQLKTYAKIMGIPVEVVYDPKELAKA 293 (424)
T ss_pred ccCCcEEEEECC--CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH-HHH-HHHHHHHHHHhCCceEccCCHHhHHHH
Confidence 334778888877 88899999999998886 568899998843210 001 11222223335788765433332
Q ss_pred HHhhhccCEEEEechhc
Q 022363 145 INTALKADLIVLNTAVA 161 (298)
Q Consensus 145 i~~A~~aDLVIaNT~v~ 161 (298)
+....++|+||+.|.-.
T Consensus 294 l~~~~~~DlVlIDt~G~ 310 (424)
T PRK05703 294 LEQLRDCDVILIDTAGR 310 (424)
T ss_pred HHHhCCCCEEEEeCCCC
Confidence 33456899999999843
No 143
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=57.55 E-value=89 Score=32.00 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=62.1
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH--
Q 022363 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-- 146 (298)
Q Consensus 69 ~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~-- 146 (298)
...-.++.++|++ .+.+|-.-.+..||..+...|..|.++....-- .+- +.-|.......|+++........+.
T Consensus 201 ~~~~~~~ii~lvG--ptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR-~gA-veQLk~yae~lgvpv~~~~dp~dL~~a 276 (407)
T PRK12726 201 FDLSNHRIISLIG--QTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFR-SGA-VEQFQGYADKLDVELIVATSPAELEEA 276 (407)
T ss_pred ceecCCeEEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccC-ccH-HHHHHHHhhcCCCCEEecCCHHHHHHH
Confidence 3444566666776 468899999999999998889999998843210 011 1233444444588887543333332
Q ss_pred --hh---hccCEEEEechhc----hHHHHHHh
Q 022363 147 --TA---LKADLIVLNTAVA----GKWLDAVL 169 (298)
Q Consensus 147 --~A---~~aDLVIaNT~v~----g~wl~~l~ 169 (298)
.+ .++|+|++.|+-. ..+++++.
T Consensus 277 l~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~ 308 (407)
T PRK12726 277 VQYMTYVNCVDHILIDTVGRNYLAEESVSEIS 308 (407)
T ss_pred HHHHHhcCCCCEEEEECCCCCccCHHHHHHHH
Confidence 22 4689999999976 34555553
No 144
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=57.28 E-value=20 Score=30.93 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=29.9
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEE
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN 108 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~ 108 (298)
.+||+||+| .|.-.||+ -|.+.+..|++.|.+++
T Consensus 107 ~~gk~VLIV-DDIitTG~--Tl~~a~~~L~~~Ga~~v 140 (169)
T TIGR01090 107 KPGQRVLIV-DDLLATGG--TAEATDELIRKLGGEVV 140 (169)
T ss_pred CCcCEEEEE-eccccchH--HHHHHHHHHHHcCCEEE
Confidence 399999999 88999999 78899999999998843
No 145
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=57.23 E-value=33 Score=24.47 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=30.1
Q ss_pred cCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecccChh
Q 022363 238 GNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSMNFL 282 (298)
Q Consensus 238 ~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~sv~~~ 282 (298)
+.+++.-+ ++.++ +-+.+.+.+|+|++|+-| .|+-+.|+
T Consensus 11 grs~eqk~----~l~~~-it~~l~~~~~~p~~~v~V-~i~e~~~~ 49 (62)
T PRK00745 11 GRTVEQKR----KLVEE-ITRVTVETLGCPPESVDI-IITDVKRE 49 (62)
T ss_pred CCCHHHHH----HHHHH-HHHHHHHHcCCChhHEEE-EEEEcChH
Confidence 46777777 88888 889999999999999854 44555553
No 146
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=56.87 E-value=28 Score=25.25 Aligned_cols=33 Identities=21% Similarity=0.436 Sum_probs=27.8
Q ss_pred cCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEE
Q 022363 238 GNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI 275 (298)
Q Consensus 238 ~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~ 275 (298)
+.+++.-+ ++.++ +-+.+.+.+|+|++|+-+.+
T Consensus 11 grt~eqk~----~l~~~-it~~l~~~lg~p~~~v~V~i 43 (64)
T PRK01964 11 GRPEEKIK----NLIRE-VTEAISATLDVPKERVRVIV 43 (64)
T ss_pred CCCHHHHH----HHHHH-HHHHHHHHhCcChhhEEEEE
Confidence 56777777 88888 88999999999999988654
No 147
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=56.87 E-value=53 Score=32.29 Aligned_cols=77 Identities=8% Similarity=0.061 Sum_probs=46.6
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHH-hCCCeEEEEeccCCCCchhhhhhhHHHHHHc--CCceeehhchhHHH
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLR-GVGTKVNWITIQKPSEEDEVIYSLEHKMWDR--GVQVISAKGQETIN 146 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~Lk-q~G~~V~vL~~~~G~~~g~v~~~L~~kll~r--gI~v~~~k~~~~i~ 146 (298)
++..||++.++. .|.....+++.|. +.|.+++.+....+.. .+ -++.++... ++.+.+|. ..+.
T Consensus 297 ~~l~gkrv~i~g-------~~~~~~~l~~~L~~elG~~vv~~~~~~~~~-~~---~~~~~~~~~~~~~~i~~D~--~e~~ 363 (430)
T cd01981 297 QNLTGKRAFVFG-------DATHVAAATRILAREMGFRVVGAGTYCKED-AK---WFREQATGYCDEALITDDH--TEVG 363 (430)
T ss_pred ccccCCeEEEEc-------ChHHHHHHHHHHHHHcCCEEEeccCCCccH-HH---HHHHHHHhcCCceEEecCH--HHHH
Confidence 467799987754 4668889999886 8999999877544321 11 122333222 22222332 2222
Q ss_pred ---hhhccCEEEEech
Q 022363 147 ---TALKADLIVLNTA 159 (298)
Q Consensus 147 ---~A~~aDLVIaNT~ 159 (298)
...++|+||.||-
T Consensus 364 ~~i~~~~pdliig~~~ 379 (430)
T cd01981 364 DMIARTEPELIFGTQM 379 (430)
T ss_pred HHHHhhCCCEEEecch
Confidence 2458999999994
No 148
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=56.80 E-value=22 Score=27.93 Aligned_cols=42 Identities=33% Similarity=0.366 Sum_probs=33.1
Q ss_pred CccccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 022363 67 SPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (298)
Q Consensus 67 ~~~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (298)
.+....+||+||+| .|.=.||. -|.+.++.|++.|.+++-+.
T Consensus 81 ~~~~~~~gk~vliV-DDvi~tG~--Tl~~~~~~L~~~g~~~v~~~ 122 (125)
T PF00156_consen 81 IDKEDIKGKRVLIV-DDVIDTGG--TLKEAIELLKEAGAKVVGVA 122 (125)
T ss_dssp EESSSGTTSEEEEE-EEEESSSH--HHHHHHHHHHHTTBSEEEEE
T ss_pred cccccccceeEEEE-eeeEcccH--HHHHHHHHHHhCCCcEEEEE
Confidence 45677899988887 56666777 78899999999999876543
No 149
>PRK06116 glutathione reductase; Validated
Probab=56.35 E-value=46 Score=32.48 Aligned_cols=59 Identities=20% Similarity=0.355 Sum_probs=44.4
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC---CCchhhhhhhHHHHHHcCCceeeh
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP---SEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G---~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
+|+|++| |+-..-+|+|..|.+.|.+|.++..... ..+.++...+.+.+.++|+.+...
T Consensus 167 ~~~vvVi-------GgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~ 228 (450)
T PRK06116 167 PKRVAVV-------GAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTN 228 (450)
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECC
Confidence 4778777 4445788999999999999999984332 134566677888898999988754
No 150
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=56.18 E-value=31 Score=34.44 Aligned_cols=76 Identities=24% Similarity=0.247 Sum_probs=45.4
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHH--cCCceeehhch----h--
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD--RGVQVISAKGQ----E-- 143 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~--rgI~v~~~k~~----~-- 143 (298)
++||+|++. .+.+.|-+-..++++.|++.|++|.++..+.. -.++ ..+.+. .+-+++.+... .
T Consensus 1 l~~k~Illg---iTGSiaa~~~~~ll~~L~~~g~~V~vv~T~~A---~~fv---~~~~l~~~~~~~v~~~~~~~~~~~~~ 71 (390)
T TIGR00521 1 LENKKILLG---VTGGIAAYKTVELVRELVRQGAEVKVIMTEAA---KKFI---TPLTLEALSGHKVVTELWGPIEHNAL 71 (390)
T ss_pred CCCCEEEEE---EeCHHHHHHHHHHHHHHHhCCCEEEEEECHhH---HHHH---HHHHHHHhhCCceeehhccccccccc
Confidence 368888775 23443346678899999999999999996654 2222 222222 24556544211 1
Q ss_pred HHHhhhccCEEEE
Q 022363 144 TINTALKADLIVL 156 (298)
Q Consensus 144 ~i~~A~~aDLVIa 156 (298)
-|.....+|++++
T Consensus 72 hi~l~~~aD~~vV 84 (390)
T TIGR00521 72 HIDLAKWADLILI 84 (390)
T ss_pred hhhcccccCEEEE
Confidence 1334567888875
No 151
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=56.12 E-value=32 Score=33.01 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=32.2
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (298)
-++||++++| .|.=.||+ -|.+.|+.||+.|+.-+.+..-+|
T Consensus 208 ~v~Gr~vIIV-DDIidTG~--Tl~~aa~~Lk~~GA~~V~~~~tHg 249 (301)
T PRK07199 208 PWAGRTPVLV-DDIVSTGR--TLIEAARQLRAAGAASPDCVVVHA 249 (301)
T ss_pred ccCCCEEEEE-ecccCcHH--HHHHHHHHHHHCCCcEEEEEEEee
Confidence 4689988666 67777888 477999999999997555554555
No 152
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=56.10 E-value=41 Score=34.36 Aligned_cols=79 Identities=10% Similarity=0.081 Sum_probs=46.8
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHH-hCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH--
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLR-GVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-- 146 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~Lk-q~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~-- 146 (298)
+|..||++.++ |.|-....+++.|. +.|.+|+......+ ..-..+.+++...+..+........+.
T Consensus 291 ~~l~Gkrv~I~-------gd~~~a~~l~~~L~~ElG~~vv~~gt~~~----~~~~~~~~~~~~~~~~~~i~dD~~ei~~~ 359 (511)
T TIGR01278 291 QSLTGKRAFVF-------GDATHAVGMTKILARELGIHIVGAGTYCK----YDADWVREQVAGYVDEVLITDDFQEVADA 359 (511)
T ss_pred HHhcCCeEEEE-------cCcHHHHHHHHHHHHhCCCEEEecCCchh----hhHHHHHHHHHhcCCCeEEeCCHHHHHHH
Confidence 45789999765 34778999999997 89999976653322 111122333333332332211112222
Q ss_pred -hhhccCEEEEech
Q 022363 147 -TALKADLIVLNTA 159 (298)
Q Consensus 147 -~A~~aDLVIaNT~ 159 (298)
...++|+||.|+-
T Consensus 360 i~~~~pdliiG~~~ 373 (511)
T TIGR01278 360 IAALEPELVLGTQM 373 (511)
T ss_pred HHhcCCCEEEEChH
Confidence 2458999999993
No 153
>PRK09739 hypothetical protein; Provisional
Probab=56.08 E-value=86 Score=27.45 Aligned_cols=88 Identities=13% Similarity=0.033 Sum_probs=46.2
Q ss_pred ccccEEEEEeccCCCCCch-HHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhc
Q 022363 72 MKSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAP-LlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~ 150 (298)
|+.++||+|+--....|.- .++=.+++.+++.|++|.++-....+..+.....-..... .+.....+...+.++....
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~ 79 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWK-NPDKRYSPEVHQLYSELLE 79 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhc-ccCCCCCHHHHHHHHHHHh
Confidence 4556777774333334433 3555566889999999988864432211111000000111 1112223333445567889
Q ss_pred cCEEEEechh
Q 022363 151 ADLIVLNTAV 160 (298)
Q Consensus 151 aDLVIaNT~v 160 (298)
+|.||.-|=+
T Consensus 80 AD~iV~~~P~ 89 (199)
T PRK09739 80 HDALVFVFPL 89 (199)
T ss_pred CCEEEEECch
Confidence 9999998754
No 154
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=55.97 E-value=47 Score=32.74 Aligned_cols=59 Identities=25% Similarity=0.459 Sum_probs=43.2
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccC---CCCchhhhhhhHHHHHHcCCceeeh
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK---PSEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~---G~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
.|+|++| |+-..-+|+|..|++.|.+|.++.... +..+.++...+++.+.++||.+...
T Consensus 180 ~~~vvII-------GgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~ 241 (472)
T PRK05976 180 PKSLVIV-------GGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTG 241 (472)
T ss_pred CCEEEEE-------CCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeC
Confidence 4667776 444578999999999999999886332 1234556667788888889988754
No 155
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=55.71 E-value=59 Score=30.82 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=35.5
Q ss_pred EEEEEeccCC--CCCchHHHHHH--HHHHHhCCCeEEEEeccCC
Q 022363 76 LVLLVSHELS--LSGGPLLLMEL--AFLLRGVGTKVNWITIQKP 115 (298)
Q Consensus 76 kILLISHELS--~TGAPLlLleL--A~~Lkq~G~~V~vL~~~~G 115 (298)
.+|+|.=|+. .-|-|...-|+ ...|++.|.+|.++.++..
T Consensus 32 D~lviaGDlt~~~~~~~~~~~~~~~~e~l~~~~~~v~avpGNcD 75 (226)
T COG2129 32 DLLVIAGDLTYFHFGPKEVAEELNKLEALKELGIPVLAVPGNCD 75 (226)
T ss_pred CEEEEecceehhhcCchHHHHhhhHHHHHHhcCCeEEEEcCCCC
Confidence 4899999999 78999999998 8999999999999996644
No 156
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=55.61 E-value=75 Score=26.94 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=26.6
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEecc
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (298)
|++|+||+.. .||+ +=.++++.|.+.|++|.++..+
T Consensus 3 ~~~~~vlItG----~sg~--iG~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 3 LEGKVALVTG----ASRG--IGRAIAERLAAQGANVVINYAS 38 (248)
T ss_pred CCCCEEEEEC----CCch--HHHHHHHHHHHCCCEEEEEeCC
Confidence 4667777765 3444 6678999999999998777744
No 157
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=55.38 E-value=76 Score=24.63 Aligned_cols=59 Identities=27% Similarity=0.271 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh--hchhHHH--hhhccCEEEEec
Q 022363 91 LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA--KGQETIN--TALKADLIVLNT 158 (298)
Q Consensus 91 LlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~--k~~~~i~--~A~~aDLVIaNT 158 (298)
-+-.++++.|++.|.+|+++-... ...+++.+.|++++.- .....++ -..++|.||+-|
T Consensus 8 ~~~~~i~~~L~~~~~~vvvid~d~---------~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 8 RIGREIAEQLKEGGIDVVVIDRDP---------ERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSH---------HHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred HHHHHHHHHHHhCCCEEEEEECCc---------HHHHHHHhcccccccccchhhhHHhhcCccccCEEEEcc
Confidence 366789999999777888888442 2357888889998844 3333444 356999999887
No 158
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=55.35 E-value=1e+02 Score=25.13 Aligned_cols=79 Identities=19% Similarity=0.143 Sum_probs=49.7
Q ss_pred EEEEEeccCCCCCchHHHHHH-HHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhccCEE
Q 022363 76 LVLLVSHELSLSGGPLLLMEL-AFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLI 154 (298)
Q Consensus 76 kILLISHELS~TGAPLlLleL-A~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~aDLV 154 (298)
||++|+.-....|---.|.+. ++.|++.|+++.++-..+-+ + +......... ....+.-++-.+...++|.|
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~----~-p~~~~~~~~~--~~~~d~~~~~~~~l~~aD~i 74 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYP----L-PCCDGDFECP--CYIPDDVQELYDKLKEADGI 74 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSH----C-HHHHHHHHHT--GCTSHHHHHHHHHHHHSSEE
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccc----h-hhcccccccc--cCCcHHHHHHHhceecCCeE
Confidence 799999888766666556554 58888889999999744321 1 1112222111 33344334445578899999
Q ss_pred EEechhc
Q 022363 155 VLNTAVA 161 (298)
Q Consensus 155 IaNT~v~ 161 (298)
|.-|=+=
T Consensus 75 I~~sP~y 81 (152)
T PF03358_consen 75 IFASPVY 81 (152)
T ss_dssp EEEEEEB
T ss_pred EEeecEE
Confidence 9988764
No 159
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=55.20 E-value=29 Score=33.56 Aligned_cols=78 Identities=26% Similarity=0.297 Sum_probs=50.4
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh------chhHH
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------GQETI 145 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k------~~~~i 145 (298)
.+|.+|-.--|==--| ..|++-|+..|++|.|-.++-.+..|++...| .+.||+|+--+ +...+
T Consensus 41 l~G~rIa~cLHle~kT------A~L~~tL~a~GAeV~~~~sNplSTQDdvaAAL----~~~Gi~V~A~~get~eey~~~i 110 (268)
T PF05221_consen 41 LKGARIAGCLHLEAKT------AVLAETLKALGAEVRWTGSNPLSTQDDVAAAL----AEEGIPVFAWKGETDEEYWWCI 110 (268)
T ss_dssp TTTEEEEEES--SHHH------HHHHHHHHHTTEEEEEEESSTTT--HHHHHHH----HHTTEEEEE-TT--HHHHHHHH
T ss_pred CCCCEEEEEEechHHH------HHHHHHHHHcCCeEEEecCCCcccchHHHHHh----ccCCceEEEeCCCCHHHHHHHH
Confidence 4688888877732222 34788899999999999988778888885444 47899999654 33334
Q ss_pred Hhhh------ccCEEEEech
Q 022363 146 NTAL------KADLIVLNTA 159 (298)
Q Consensus 146 ~~A~------~aDLVIaNT~ 159 (298)
..+. +.|+||=+-.
T Consensus 111 ~~~L~~~~~~~P~~iiDDG~ 130 (268)
T PF05221_consen 111 EKALSWEDDHGPNLIIDDGG 130 (268)
T ss_dssp HHCHSESTTCE-SEEEESSS
T ss_pred HHHhcCCCCCCcceeecchH
Confidence 3222 5788886644
No 160
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=55.06 E-value=54 Score=32.23 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=44.6
Q ss_pred HH-HHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhccCEEEEechhc--hHHHHHHhh
Q 022363 94 ME-LAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVA--GKWLDAVLK 170 (298)
Q Consensus 94 le-LA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~aDLVIaNT~v~--g~wl~~l~~ 170 (298)
|. +|++|++.|++|.+.= .+. . ...+++.+.|+++... +... ...++|+||....+. .+.+.+..+
T Consensus 12 m~~la~~L~~~G~~v~~~D-~~~-~------~~~~~l~~~gi~~~~g-~~~~--~~~~~d~vV~spgi~~~~p~~~~a~~ 80 (448)
T TIGR01082 12 MSGIAEILLNRGYQVSGSD-IAE-N------ATTKRLEALGIPIYIG-HSAE--NLDDADVVVVSAAIKDDNPEIVEAKE 80 (448)
T ss_pred HHHHHHHHHHCCCeEEEEC-CCc-c------hHHHHHHHCcCEEeCC-CCHH--HCCCCCEEEECCCCCCCCHHHHHHHH
Confidence 55 9999999999986422 111 1 1235677779988765 2221 235799999998886 455666554
Q ss_pred ccC
Q 022363 171 EDV 173 (298)
Q Consensus 171 ~~~ 173 (298)
.+.
T Consensus 81 ~~i 83 (448)
T TIGR01082 81 RGI 83 (448)
T ss_pred cCC
Confidence 444
No 161
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=54.95 E-value=52 Score=31.98 Aligned_cols=80 Identities=19% Similarity=0.264 Sum_probs=52.0
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC---CCchhhhhhhHHHHHHcCCceeehhchhHHH----
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP---SEEDEVIYSLEHKMWDRGVQVISAKGQETIN---- 146 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G---~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~---- 146 (298)
+|+|++| |+-..-+|+|..|++.|.+|.++..... ..+.++...+.+.+.++||.+........++
T Consensus 157 ~~~vvII-------GgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~ 229 (438)
T PRK07251 157 PERLGII-------GGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGD 229 (438)
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCC
Confidence 5677776 5556788999999999999998874431 1334555556677788899887542111111
Q ss_pred --------hhhccCEEEEechh
Q 022363 147 --------TALKADLIVLNTAV 160 (298)
Q Consensus 147 --------~A~~aDLVIaNT~v 160 (298)
....+|.||.-|-.
T Consensus 230 ~v~v~~~g~~i~~D~viva~G~ 251 (438)
T PRK07251 230 QVLVVTEDETYRFDALLYATGR 251 (438)
T ss_pred EEEEEECCeEEEcCEEEEeeCC
Confidence 12467888876543
No 162
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=54.91 E-value=52 Score=32.05 Aligned_cols=59 Identities=22% Similarity=0.359 Sum_probs=44.1
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC---CCchhhhhhhHHHHHHcCCceeeh
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP---SEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G---~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
+|++++| |+-..-+|+|..|.+.|.+|.++..... ..+.++...+.+.+.++|++++..
T Consensus 175 ~~~v~Ii-------GgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~ 236 (461)
T PRK05249 175 PRSLIIY-------GAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHN 236 (461)
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEEC
Confidence 4667776 3445678999999999999999874431 134566677888888899998854
No 163
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=54.90 E-value=75 Score=31.18 Aligned_cols=77 Identities=14% Similarity=0.156 Sum_probs=47.8
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee--ehhchhHHHhhh
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI--SAKGQETINTAL 149 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~--~~k~~~~i~~A~ 149 (298)
.+|++|.+|.+ .++ +.-.++..+...|.+|.+.+-.+=...+++..-+++...+.|..+. ++ .-+...
T Consensus 152 l~glkv~~vGD-~~~-----v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d----~~eav~ 221 (338)
T PRK02255 152 LEDCKVVFVGD-ATQ-----VCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDD----VDEAVK 221 (338)
T ss_pred CCCCEEEEECC-Cch-----HHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcC----HHHHhC
Confidence 67899999996 344 5666677777889999998833211223443333334444564443 33 123567
Q ss_pred ccCEEEEec
Q 022363 150 KADLIVLNT 158 (298)
Q Consensus 150 ~aDLVIaNT 158 (298)
++|.|++-+
T Consensus 222 ~aDvvy~~~ 230 (338)
T PRK02255 222 DADFVYTDV 230 (338)
T ss_pred CCCEEEEcc
Confidence 999999954
No 164
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=54.55 E-value=2e+02 Score=28.10 Aligned_cols=83 Identities=19% Similarity=0.192 Sum_probs=51.3
Q ss_pred EEEEecc-CCCCCchHHHHHHHHHHHhCCCeEEEEe-ccCCCC-c---------hhhhhhhHHHHHHc--CCceeehh-c
Q 022363 77 VLLVSHE-LSLSGGPLLLMELAFLLRGVGTKVNWIT-IQKPSE-E---------DEVIYSLEHKMWDR--GVQVISAK-G 141 (298)
Q Consensus 77 ILLISHE-LS~TGAPLlLleLA~~Lkq~G~~V~vL~-~~~G~~-~---------g~v~~~L~~kll~r--gI~v~~~k-~ 141 (298)
|+-|+.- .+.||-==+...|+++|++.|..|.+++ +.||.. . +.-..+=|..++.+ +++|+-.+ .
T Consensus 51 vIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~~~V~V~~dR 130 (325)
T PRK00652 51 VIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYGGKLEKGPLLVDPDHTAAEVGDEPLLIARRTGAPVAVSPDR 130 (325)
T ss_pred EEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCCCCcCCCCEEeCCCCChhhhCcHHHHhccCCCceEEEcCcH
Confidence 5555544 4677877788899999999999999999 554421 1 00111345566666 77877442 2
Q ss_pred hhHHHhh---hccCEEEEech
Q 022363 142 QETINTA---LKADLIVLNTA 159 (298)
Q Consensus 142 ~~~i~~A---~~aDLVIaNT~ 159 (298)
.+....+ .++|+||..=.
T Consensus 131 ~~~~~~~~~~~~~dviilDDG 151 (325)
T PRK00652 131 VAAARALLAAHGADIIILDDG 151 (325)
T ss_pred HHHHHHHHhcCCCCEEEEcCC
Confidence 2233322 15777777533
No 165
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=54.35 E-value=30 Score=30.84 Aligned_cols=62 Identities=19% Similarity=0.147 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc-CCceeehhch-------hHHHhhhccCEEEE
Q 022363 90 PLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISAKGQ-------ETINTALKADLIVL 156 (298)
Q Consensus 90 PLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~r-gI~v~~~k~~-------~~i~~A~~aDLVIa 156 (298)
-+-..++.+.|++.|.+|.++..+.. ..++.+.. +... |-+++.+... .-|..+..+|++++
T Consensus 14 a~~~~~li~~L~~~g~~V~vv~T~~A---~~fi~~~~--l~~l~~~~v~~~~~~~~~~~~~~hi~l~~~aD~~vI 83 (182)
T PRK07313 14 AYKAADLTSQLTKRGYQVTVLMTKAA---TKFITPLT--LQVLSKNPVHLDVMDEHDPKLMNHIELAKRADLFLV 83 (182)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEChhH---HHHcCHHH--HHHHhCCceEeccccccccCCccccccccccCEEEE
Confidence 34467999999999999999886653 23332221 2211 5567665322 12335678998885
No 166
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=54.32 E-value=33 Score=27.24 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceee
Q 022363 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS 138 (298)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~ 138 (298)
=++-|++.|++.|++|.+.+.. .+++...+.|++...
T Consensus 14 P~lala~~L~~rGh~V~~~~~~----------~~~~~v~~~Gl~~~~ 50 (139)
T PF03033_consen 14 PFLALARALRRRGHEVRLATPP----------DFRERVEAAGLEFVP 50 (139)
T ss_dssp HHHHHHHHHHHTT-EEEEEETG----------GGHHHHHHTT-EEEE
T ss_pred HHHHHHHHHhccCCeEEEeecc----------cceecccccCceEEE
Confidence 3568999999999999988833 346777777877764
No 167
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=54.14 E-value=20 Score=31.40 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=29.5
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEE
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNW 109 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~v 109 (298)
.++||+|||| .|--+||| -|-+.++.|++.|+..+-
T Consensus 149 ~~~~~~vllv-DDV~TTGa--Tl~~~~~~L~~~Ga~~V~ 184 (190)
T TIGR00201 149 SFQGRNIVLV-DDVVTTGA--TLHEIARLLLELGAASVQ 184 (190)
T ss_pred CCCCCEEEEE-eeeeccHH--HHHHHHHHHHHcCCCEEE
Confidence 3678887765 88999999 789999999999977443
No 168
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=54.06 E-value=52 Score=29.53 Aligned_cols=59 Identities=14% Similarity=0.387 Sum_probs=39.7
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe--ccCCCCchhhhhhhHHHHHHcCCceeeh
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT--IQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~--~~~G~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
+.+|++|++|= |.=.||+ -+.+..+.+++.|.+|+-+. ..++. +-.+++.++|+++..-
T Consensus 119 ~~~g~rVlIVD-DVitTGg--S~~~~i~~l~~~Ga~V~~v~vlvdr~~-------g~~~~l~~~gi~~~sl 179 (187)
T PRK13810 119 LKPEDRIVMLE-DVTTSGG--SVREAIEVVREAGAYIKYVITVVDREE-------GAEENLKEADVELVPL 179 (187)
T ss_pred CCCcCEEEEEE-eccCCCh--HHHHHHHHHHHCCCEEEEEEEEEECCc-------ChHHHHHHcCCcEEEE
Confidence 45799998885 5555666 57788899999999854333 22221 1246777889988743
No 169
>PRK06370 mercuric reductase; Validated
Probab=53.74 E-value=55 Score=32.13 Aligned_cols=59 Identities=20% Similarity=0.369 Sum_probs=43.2
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC---CchhhhhhhHHHHHHcCCceeeh
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS---EEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~---~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
+|+|++| |+=..-+|+|..|++.|.+|.++...... .+.++...+.+.+.++|+++...
T Consensus 171 ~~~vvVI-------GgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~ 232 (463)
T PRK06370 171 PEHLVII-------GGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLN 232 (463)
T ss_pred CCEEEEE-------CCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeC
Confidence 4777777 33346789999999999999999743321 33455566788888889998854
No 170
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=53.71 E-value=60 Score=32.76 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=59.3
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH-hh
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-TA 148 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~-~A 148 (298)
.+..||+|.+. |.|-....+++.|.+.|.++..+...... +. .+++. .+.-++.|.. .+. .+
T Consensus 307 ~~l~gkrvai~-------~~~~~~~~la~~L~elG~~v~~~~~~~~~--~~-----~~~~~-~~~i~~~D~~--~le~~~ 369 (455)
T PRK14476 307 FYFGGKRVAIA-------AEPDLLLALGSFLAEMGAEIVAAVTTTKS--PA-----LEDLP-AEEVLIGDLE--DLEELA 369 (455)
T ss_pred HHhcCCEEEEE-------eCHHHHHHHHHHHHHCCCEEEEEEeCCCc--HH-----HHhCC-cCcEEeCCHH--HHHHhc
Confidence 35679998766 35568899999999999999888854431 11 12221 1111223322 232 23
Q ss_pred hccCEEEEechhchHHHHHHhhccCCCC--CCceEEEeeeccccccc
Q 022363 149 LKADLIVLNTAVAGKWLDAVLKEDVPRV--LPNVLWWIHEMRGHYFK 193 (298)
Q Consensus 149 ~~aDLVIaNT~v~g~wl~~l~~~~~p~~--~~pVIWWIHE~r~~Yf~ 193 (298)
.++|++|.|+-. +++-. +.+.|.. ..|+.--++.-++-|..
T Consensus 370 ~~~dliig~s~~--~~~a~--~~gip~~~~g~Pi~d~~~~~~~~~~G 412 (455)
T PRK14476 370 EGADLLITNSHG--RQAAE--RLGIPLLRVGFPIFDRLGNAHRCTVG 412 (455)
T ss_pred cCCCEEEECchh--HHHHH--HcCCCEEEecCCccccccccccCccc
Confidence 489999999974 33221 2244443 23664455555555555
No 171
>PRK10262 thioredoxin reductase; Provisional
Probab=53.53 E-value=40 Score=31.09 Aligned_cols=61 Identities=20% Similarity=0.275 Sum_probs=42.8
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC-CCchhhhhhhHHHHHHcCCceeeh
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP-SEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G-~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
.++|+|++| |+-..-+|+|..|.+.|.+|.++..... ..+......+.+.+.++||++...
T Consensus 144 ~~g~~vvVv-------GgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~ 205 (321)
T PRK10262 144 YRNQKVAVI-------GGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTN 205 (321)
T ss_pred cCCCEEEEE-------CCCHHHHHHHHHHHhhCCEEEEEEECCccCCCHHHHHHHHhhccCCCeEEEeC
Confidence 467888887 4446789999999999999999985432 122334445566666778887764
No 172
>PRK10867 signal recognition particle protein; Provisional
Probab=53.28 E-value=1.1e+02 Score=31.21 Aligned_cols=82 Identities=20% Similarity=0.187 Sum_probs=53.5
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhC-CCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh---chh-----HHH
Q 022363 76 LVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK---GQE-----TIN 146 (298)
Q Consensus 76 kILLISHELS~TGAPLlLleLA~~Lkq~-G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k---~~~-----~i~ 146 (298)
.|++++ ...+|=--....||.+|++. |..|.++.+..- ......-|.....+.|++++... ... .+.
T Consensus 102 vI~~vG--~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~--R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 102 VIMMVG--LQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY--RPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred EEEEEC--CCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc--chHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 344444 88899999999999999998 999999884321 11112233333445589988542 111 222
Q ss_pred h--hhccCEEEEechhc
Q 022363 147 T--ALKADLIVLNTAVA 161 (298)
Q Consensus 147 ~--A~~aDLVIaNT~v~ 161 (298)
. ..++|+||+.|+--
T Consensus 178 ~a~~~~~DvVIIDTaGr 194 (433)
T PRK10867 178 EAKENGYDVVIVDTAGR 194 (433)
T ss_pred HHHhcCCCEEEEeCCCC
Confidence 2 34699999999963
No 173
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=53.19 E-value=59 Score=30.89 Aligned_cols=70 Identities=21% Similarity=0.255 Sum_probs=45.8
Q ss_pred CchHHHHHHHHHHHhCCCeEEEEeccCCCC---ch-hhhhhhHHHHHHcCCceeehhc---hhHHH--hhhccCEEEEe
Q 022363 88 GGPLLLMELAFLLRGVGTKVNWITIQKPSE---ED-EVIYSLEHKMWDRGVQVISAKG---QETIN--TALKADLIVLN 157 (298)
Q Consensus 88 GAPLlLleLA~~Lkq~G~~V~vL~~~~G~~---~g-~v~~~L~~kll~rgI~v~~~k~---~~~i~--~A~~aDLVIaN 157 (298)
|.+-+-....+.|.+.|++++.+..+.... +. ....++.+...+.|||++.-.. .+.++ ...++|++|+-
T Consensus 7 G~~~~a~~~L~~L~~~~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~~~~~~~~~~l~~~~~Dliv~~ 85 (309)
T PRK00005 7 GTPEFAVPSLKALLESGHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPEKLRDPEFLAELAALNADVIVVV 85 (309)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcCCCCCHHHHHHHHhcCcCEEEEe
Confidence 667777888888888899988766442211 11 1234678888888999985322 12222 35699999875
No 174
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=53.12 E-value=54 Score=31.34 Aligned_cols=71 Identities=21% Similarity=0.239 Sum_probs=46.8
Q ss_pred CchHHHHHHHHHHHhCCCeEEEEeccCCC----CchhhhhhhHHHHHHcCCceeehhch---hHHH--hhhccCEEEEec
Q 022363 88 GGPLLLMELAFLLRGVGTKVNWITIQKPS----EEDEVIYSLEHKMWDRGVQVISAKGQ---ETIN--TALKADLIVLNT 158 (298)
Q Consensus 88 GAPLlLleLA~~Lkq~G~~V~vL~~~~G~----~~g~v~~~L~~kll~rgI~v~~~k~~---~~i~--~A~~aDLVIaNT 158 (298)
|.|-+.....+.|.+.|++++.+..+.+. .......++.+...+.||+++..... +.+. ...++|++|+-.
T Consensus 7 Gs~~~a~~~L~~L~~~~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~~~~~~~~l~~~~~Dliv~~~ 86 (313)
T TIGR00460 7 GTPTFSLPVLEELREDNFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQRQLEELPLVRELKPDVIVVVS 86 (313)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCCcHHHHHHHHhhCCCEEEEcc
Confidence 66767778888888889998877754321 11122346788888899999854222 2222 356999998653
No 175
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=53.09 E-value=84 Score=30.35 Aligned_cols=104 Identities=20% Similarity=0.222 Sum_probs=53.8
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH---
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN--- 146 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~--- 146 (298)
....||++.+.. + .+ .+..+++.|++.|.+|+.+...... +..... ..+.++....++.+....++.
T Consensus 282 ~~l~gkrv~I~~-~-----~~-~~~~~~~~l~elG~~v~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 351 (406)
T cd01967 282 ERLKGKKVIIYT-G-----GA-RSWHVIAALRELGMEVVAAGYEFGH--DDDYER-IRKILDEGTLLVDDYNDLELEELV 351 (406)
T ss_pred HhccCCEEEEEc-c-----Cc-chHHHHHHHHHcCCEEEEEEEecCC--HHHHHH-HHhcCCCCcEEEeCCCHHHHHHHH
Confidence 356789887543 2 22 2344568999999998766533221 111001 111222233455554444443
Q ss_pred hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeecccccc
Q 022363 147 TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF 192 (298)
Q Consensus 147 ~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf 192 (298)
...++||+|.|+-.. ++..- ..+ |.++-.++.++-|+
T Consensus 352 ~~~~pdl~ig~~~~~--~~a~~--~gi-----p~~~~~~~~~~~~~ 388 (406)
T cd01967 352 EKLKPDLILSGIKEK--YVAQK--LGI-----PFLDLHSERNGPYA 388 (406)
T ss_pred HhcCCCEEEeCCcch--HHHHh--cCC-----CEEecCCCccCCcc
Confidence 345899999999743 33311 133 77666555434444
No 176
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=52.85 E-value=12 Score=36.41 Aligned_cols=187 Identities=27% Similarity=0.326 Sum_probs=96.2
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC-----CchhhhhhhHHHHHHcCC-ceeeh-----hc
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS-----EEDEVIYSLEHKMWDRGV-QVISA-----KG 141 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~-----~~g~v~~~L~~kll~rgI-~v~~~-----k~ 141 (298)
.||++|+||=|---+.++++-+++...-++-+-++..+... .. +++++...+...+...++ ....+ .|
T Consensus 29 ~g~kvLlvStDPAhsL~d~f~~elg~~~~~I~~nL~a~eiD-~~~~l~ey~~~v~~~~~~~~~~~~l~~~~~~e~~~~PG 107 (322)
T COG0003 29 SGKKVLLVSTDPAHSLGDVFDLELGHDPRKVGPNLDALELD-PEKALEEYWDEVKDYLARLLRTRGLGGIYADELATLPG 107 (322)
T ss_pred cCCcEEEEEeCCCCchHhhhccccCCchhhcCCCCceeeec-HHHHHHHHHHHHHHHHHhhccccccchhHHHHHhhCCC
Confidence 35779999999888888888887776666655444443311 11 445554444444444432 11111 22
Q ss_pred hhH------HH---hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeecc-----ccccccccccccccccccc
Q 022363 142 QET------IN---TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR-----GHYFKLDYVKHLPLVAGAM 207 (298)
Q Consensus 142 ~~~------i~---~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r-----~~Yf~l~~vkhLp~v~~~~ 207 (298)
.++ |. ....+|.||.-|+-.|+-++-|. +|.++-|..|.. +.++. --+-+..++|.-
T Consensus 108 idE~~~l~~i~e~~~~~~yD~IV~DtaPTG~TLRlL~-------lP~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 178 (322)
T COG0003 108 IDEALALLKILEYYVSGEYDVIVVDTAPTGHTLRLLS-------LPEVLGWYLEKLFKPRRKRMVK--ALKSLSTAAGSP 178 (322)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEcCCChHHHHHHhc-------cHHHHHHHHHhhhhhHHHHHHH--hhhhcccccCCc
Confidence 222 11 35689999999999999999663 556666766632 22222 001122222222
Q ss_pred cccHHHHHHHHH---hcc-cccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEE
Q 022363 208 IDSHVTAEYWKN---RTR-ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFA 274 (298)
Q Consensus 208 ~~S~AtA~yw~~---r~~-~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~ 274 (298)
.+..+.-+...+ |.. -++-.+-|.-..+.++.+++-+-..|. ++ --...+++|++-+.+++-
T Consensus 179 ~~~~~~~e~L~~~~~~~~~~~~~l~~~~~T~~~lV~~pe~l~l~e~---~r--a~~~l~~~~i~v~~vi~n 244 (322)
T COG0003 179 LPDDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPEKLSLYET---KR--AVERLSLYGIPVDAVIVN 244 (322)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEecccccchHHH---HH--HHHHHHHcCCchheeeee
Confidence 222222232222 222 222333343222455555554442222 11 122357899999988764
No 177
>PRK12829 short chain dehydrogenase; Provisional
Probab=52.75 E-value=75 Score=27.59 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=26.8
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (298)
+.+++|++|++.- +|+ +=..+++.|.+.|++|.++..
T Consensus 7 ~~~~~~~vlItGa----~g~--iG~~~a~~L~~~g~~V~~~~r 43 (264)
T PRK12829 7 KPLDGLRVLVTGG----ASG--IGRAIAEAFAEAGARVHVCDV 43 (264)
T ss_pred hccCCCEEEEeCC----CCc--HHHHHHHHHHHCCCEEEEEeC
Confidence 4478888887743 333 557889999999999766663
No 178
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=52.72 E-value=56 Score=32.36 Aligned_cols=58 Identities=22% Similarity=0.340 Sum_probs=42.1
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC---CCchhhhhhhHHHHHHcCCceeeh
Q 022363 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP---SEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 75 KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G---~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
|++++| |+-..-+|+|..|.+.|.+|.++..... ..+.++...+++.|.++||++...
T Consensus 178 ~~vvVI-------GgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~ 238 (466)
T PRK07845 178 EHLIVV-------GSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKR 238 (466)
T ss_pred CeEEEE-------CCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcC
Confidence 556666 3334677999999999999999984321 134556667788888899998854
No 179
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=52.51 E-value=68 Score=32.14 Aligned_cols=75 Identities=24% Similarity=0.278 Sum_probs=53.8
Q ss_pred EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHH----HcCCceeehh-----chhHHH-
Q 022363 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMW----DRGVQVISAK-----GQETIN- 146 (298)
Q Consensus 77 ILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll----~rgI~v~~~k-----~~~~i~- 146 (298)
||||+ -|.+|----+--||.+|++.|..|.+-++.. +-.+=.+++. +.|++++..+ +-..++
T Consensus 142 il~vG--VNG~GKTTTIaKLA~~l~~~g~~VllaA~DT------FRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDA 213 (340)
T COG0552 142 ILFVG--VNGVGKTTTIAKLAKYLKQQGKSVLLAAGDT------FRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDA 213 (340)
T ss_pred EEEEe--cCCCchHhHHHHHHHHHHHCCCeEEEEecch------HHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHH
Confidence 45554 6788999999999999999999999999332 2223334444 4499999742 122233
Q ss_pred ----hhhccCEEEEech
Q 022363 147 ----TALKADLIVLNTA 159 (298)
Q Consensus 147 ----~A~~aDLVIaNT~ 159 (298)
.++++|+|++-|+
T Consensus 214 i~~Akar~~DvvliDTA 230 (340)
T COG0552 214 IQAAKARGIDVVLIDTA 230 (340)
T ss_pred HHHHHHcCCCEEEEeCc
Confidence 4789999999998
No 180
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=52.09 E-value=47 Score=26.25 Aligned_cols=39 Identities=26% Similarity=0.204 Sum_probs=31.8
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (298)
++.-++++ |.+|..--+.+.++.+|+.|.+|..+++.++
T Consensus 47 ~~d~vi~i----S~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 47 PGDVVIAI----SNSGETDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CCCEEEEE----eCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 44456666 5678888999999999999999999997665
No 181
>PLN00016 RNA-binding protein; Provisional
Probab=51.78 E-value=93 Score=29.63 Aligned_cols=82 Identities=20% Similarity=0.146 Sum_probs=47.1
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhh---hhhHHHHHHcCCceeehhch--hHHHhh
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVI---YSLEHKMWDRGVQVISAKGQ--ETINTA 148 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~---~~L~~kll~rgI~v~~~k~~--~~i~~A 148 (298)
.|+||+++-..+-||- +=-+|++.|.+.|++|.++...... ...+. ..-..++...|+..+..... ..+-..
T Consensus 52 ~~~VLVt~~~~GatG~--iG~~lv~~L~~~G~~V~~l~R~~~~-~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~~ 128 (378)
T PLN00016 52 KKKVLIVNTNSGGHAF--IGFYLAKELVKAGHEVTLFTRGKEP-SQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVAG 128 (378)
T ss_pred cceEEEEeccCCCcee--EhHHHHHHHHHCCCEEEEEecCCcc-hhhhccCchhhhhHhhhcCceEEEecHHHHHhhhcc
Confidence 3679988777777764 4567888888999999998854321 01000 00012334456666533111 112123
Q ss_pred hccCEEEEec
Q 022363 149 LKADLIVLNT 158 (298)
Q Consensus 149 ~~aDLVIaNT 158 (298)
.++|.||.+.
T Consensus 129 ~~~d~Vi~~~ 138 (378)
T PLN00016 129 AGFDVVYDNN 138 (378)
T ss_pred CCccEEEeCC
Confidence 5799998765
No 182
>PLN02507 glutathione reductase
Probab=51.74 E-value=60 Score=32.79 Aligned_cols=80 Identities=19% Similarity=0.335 Sum_probs=54.3
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC---CchhhhhhhHHHHHHcCCceeehhchhHH-----
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS---EEDEVIYSLEHKMWDRGVQVISAKGQETI----- 145 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~---~~g~v~~~L~~kll~rgI~v~~~k~~~~i----- 145 (298)
.|++++|. +-..-+|+|..|.+.|.+|.++...... .+.++...+++.|.++||++.....-.++
T Consensus 203 ~k~vvVIG-------gG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~ 275 (499)
T PLN02507 203 PKRAVVLG-------GGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEG 275 (499)
T ss_pred CCeEEEEC-------CcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCC
Confidence 57787773 3356799999999999999999844322 35666667788888899998755211111
Q ss_pred ----H----hhhccCEEEEechh
Q 022363 146 ----N----TALKADLIVLNTAV 160 (298)
Q Consensus 146 ----~----~A~~aDLVIaNT~v 160 (298)
. ....+|.|+..+-.
T Consensus 276 ~~~v~~~~g~~i~~D~vl~a~G~ 298 (499)
T PLN02507 276 GIKVITDHGEEFVADVVLFATGR 298 (499)
T ss_pred eEEEEECCCcEEEcCEEEEeecC
Confidence 1 12367888876553
No 183
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=51.63 E-value=37 Score=33.91 Aligned_cols=59 Identities=25% Similarity=0.191 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHH-H-----hhhccCEEEEechhch
Q 022363 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETI-N-----TALKADLIVLNTAVAG 162 (298)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i-~-----~A~~aDLVIaNT~v~g 162 (298)
.=..+|+.|...|++|.++.+..... .-.++.+++-...+.. + ...++|.+|.|.+++-
T Consensus 213 ~g~~~a~~~~~~Ga~V~~~~g~~~~~------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~i~~Aavsd 277 (390)
T TIGR00521 213 MGLALAEAAYKRGADVTLITGPVSLL------------TPPGVKSIKVSTAEEMLEAALNELAKDFDIFISAAAVAD 277 (390)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCccC------------CCCCcEEEEeccHHHHHHHHHHhhcccCCEEEEcccccc
Confidence 34578999999999999988554210 0112233322212111 1 2357899999998853
No 184
>PTZ00058 glutathione reductase; Provisional
Probab=51.15 E-value=55 Score=34.04 Aligned_cols=59 Identities=17% Similarity=0.303 Sum_probs=44.8
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC---CCchhhhhhhHHHHHHcCCceeeh
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP---SEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G---~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
+|++++| |+-..-+|+|..|...|.+|.++..... ..+.++...+++.+.++||.+...
T Consensus 237 pk~VvII-------GgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~ 298 (561)
T PTZ00058 237 AKRIGIA-------GSGYIAVELINVVNRLGAESYIFARGNRLLRKFDETIINELENDMKKNNINIITH 298 (561)
T ss_pred CCEEEEE-------CCcHHHHHHHHHHHHcCCcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 5666666 5556789999999999999999984431 234566677888898999987754
No 185
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=51.03 E-value=49 Score=23.48 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=29.8
Q ss_pred cCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecccCh
Q 022363 238 GNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSMNF 281 (298)
Q Consensus 238 ~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~sv~~ 281 (298)
+.+++.-+ ++.++ +-+.+.+.+|+|++|+.|.. +-+.|
T Consensus 11 Grs~eqk~----~l~~~-it~~l~~~~~~p~~~v~V~i-~e~~~ 48 (61)
T PRK02220 11 GRTEEQLK----ALVKD-VTAAVSKNTGAPAEHIHVII-NEMSK 48 (61)
T ss_pred CCCHHHHH----HHHHH-HHHHHHHHhCcChhhEEEEE-EEeCh
Confidence 56777777 88888 88999999999999988654 33444
No 186
>PRK12827 short chain dehydrogenase; Provisional
Probab=51.03 E-value=1.5e+02 Score=25.26 Aligned_cols=83 Identities=20% Similarity=0.249 Sum_probs=45.3
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--ee-h-hchhHH--
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--IS-A-KGQETI-- 145 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v--~~-~-k~~~~i-- 145 (298)
+++|++|++.. +|+ +=.++|+.|.+.|++|+++...... ..+-...+.+++...+..+ +. | ....++
T Consensus 4 ~~~~~ilItGa----sg~--iG~~la~~l~~~g~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 76 (249)
T PRK12827 4 LDSRRVLITGG----SGG--LGRAIAVRLAADGADVIVLDIHPMR-GRAEADAVAAGIEAAGGKALGLAFDVRDFAATRA 76 (249)
T ss_pred cCCCEEEEECC----CCh--HHHHHHHHHHHCCCeEEEEcCcccc-cHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence 56788877642 222 4568999999999998876632211 1122223344554443332 21 1 112222
Q ss_pred --H----hhhccCEEEEechhc
Q 022363 146 --N----TALKADLIVLNTAVA 161 (298)
Q Consensus 146 --~----~A~~aDLVIaNT~v~ 161 (298)
+ ...++|.||.|....
T Consensus 77 ~~~~~~~~~~~~d~vi~~ag~~ 98 (249)
T PRK12827 77 ALDAGVEEFGRLDILVNNAGIA 98 (249)
T ss_pred HHHHHHHHhCCCCEEEECCCCC
Confidence 1 124689999998654
No 187
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=50.98 E-value=60 Score=32.72 Aligned_cols=102 Identities=24% Similarity=0.282 Sum_probs=58.2
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHH-hCCCeEEEEeccCCCCchhhhhhhHHHHHHc---CCceeehhchhHH
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLR-GVGTKVNWITIQKPSEEDEVIYSLEHKMWDR---GVQVISAKGQETI 145 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~Lk-q~G~~V~vL~~~~G~~~g~v~~~L~~kll~r---gI~v~~~k~~~~i 145 (298)
...+||++.+. +|++ ....+++.|. +.|.+++.+....+. .++ + ++++++ +.-++.+....++
T Consensus 321 ~~L~GkrvaI~------~~~~-~~~~l~~~l~~ElGmevv~~~~~~~~-~~~----~-~~~~~~~~~~~~~i~d~~~~e~ 387 (457)
T TIGR01284 321 ERLRGKKVWVW------SGGP-KLWHWPRPLEDELGMEVVAVSTKFGH-EDD----Y-EKIIARVREGTVIIDDPNELEL 387 (457)
T ss_pred HHcCCCEEEEE------CCCc-HHHHHHHHHHHhCCCEEEEEEEEeCC-HHH----H-HHHHHhcCCCeEEEeCCCHHHH
Confidence 56789999763 2333 5588898886 799999987654332 111 1 223332 3334455444333
Q ss_pred H---hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc
Q 022363 146 N---TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK 193 (298)
Q Consensus 146 ~---~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~ 193 (298)
. ...++|++|.|+-- +++.. +.++ |.+-..++.++-|..
T Consensus 388 ~~~i~~~~pDllig~~~~--~~~a~--k~gi-----p~~~~~~~~~~~~~G 429 (457)
T TIGR01284 388 EEIIEKYKPDIILTGIRE--GELAK--KLGV-----PYINIHSYHNGPYIG 429 (457)
T ss_pred HHHHHhcCCCEEEecCCc--chhhh--hcCC-----CEEEccccccCCccc
Confidence 3 35689999999863 33331 1233 555555554444544
No 188
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=50.88 E-value=63 Score=33.43 Aligned_cols=78 Identities=22% Similarity=0.231 Sum_probs=48.9
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhch-------hH
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-------ET 144 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~-------~~ 144 (298)
..||+|+|.- +.+=|-+-..+|++.|++.|++|.++..+.. -.++.++.-+-+ .|-+|+.+... ..
T Consensus 68 l~~k~IllgV---tGsIAayka~~lvr~L~k~G~~V~VvmT~sA---~~fv~p~~~~~l-s~~~V~~d~~~~~~~~~~~H 140 (475)
T PRK13982 68 LASKRVTLII---GGGIAAYKALDLIRRLKERGAHVRCVLTKAA---QQFVTPLTASAL-SGQRVYTDLFDPESEFDAGH 140 (475)
T ss_pred cCCCEEEEEE---ccHHHHHHHHHHHHHHHhCcCEEEEEECcCH---HHHhhHHHHHHh-cCCceEecCCCcccccCccc
Confidence 5788888752 2222334567889999999999999986653 334444332221 25667765221 23
Q ss_pred HHhhhccCEEEE
Q 022363 145 INTALKADLIVL 156 (298)
Q Consensus 145 i~~A~~aDLVIa 156 (298)
++.+..+|++++
T Consensus 141 i~la~~aD~~vV 152 (475)
T PRK13982 141 IRLARDCDLIVV 152 (475)
T ss_pred hhhhhhcCEEEE
Confidence 556778999886
No 189
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=50.68 E-value=72 Score=25.61 Aligned_cols=46 Identities=26% Similarity=0.208 Sum_probs=35.0
Q ss_pred CCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceee
Q 022363 84 LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS 138 (298)
Q Consensus 84 LS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~ 138 (298)
.|.+|----+.+.++..|+.|.++..+++.+ +|.+...+.|..++.
T Consensus 50 iS~SG~t~e~i~~~~~a~~~g~~iI~IT~~~---------~l~~~~~~~~~~~~~ 95 (119)
T cd05017 50 VSYSGNTEETLSAVEQAKERGAKIVAITSGG---------KLLEMAREHGVPVII 95 (119)
T ss_pred EECCCCCHHHHHHHHHHHHCCCEEEEEeCCc---------hHHHHHHHcCCcEEE
Confidence 3457777789999999999999999999532 355656556777775
No 190
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=50.59 E-value=1.3e+02 Score=29.84 Aligned_cols=108 Identities=17% Similarity=0.177 Sum_probs=62.1
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCC-CeEEEEecc--CCCCchhhhhhhHHHHHHcCCc-------eee
Q 022363 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG-TKVNWITIQ--KPSEEDEVIYSLEHKMWDRGVQ-------VIS 138 (298)
Q Consensus 69 ~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G-~~V~vL~~~--~G~~~g~v~~~L~~kll~rgI~-------v~~ 138 (298)
..+.+||++++.. .|-....+++.|.+.| .+|..+... .++++.. ..++++++.|.. +..
T Consensus 288 ~~~l~Gk~~~i~~-------~~~~~~~~~~~l~elG~~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 357 (426)
T cd01972 288 RKALKGKKAIVET-------GAAYGHLLIAVLRELGFGEVPVVLVFHHDPTYDRG---DSEKDLLEHGVDPEIDITKYTV 357 (426)
T ss_pred HHHhCCCEEEEEe-------CCccHHHHHHHHHHcCCceEEEEEeccCchhhhcc---hhHHHHhcCCcccccccceeee
Confidence 3567999997764 2335677888899999 998877542 1111111 113456665552 112
Q ss_pred hh-chhHHH---hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc
Q 022363 139 AK-GQETIN---TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK 193 (298)
Q Consensus 139 ~k-~~~~i~---~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~ 193 (298)
+. ...++. ...+.|++|.++-.-.+|.. .|-.+ |++..-+|..+.|+.
T Consensus 358 ~~~~~~e~~~~l~~~~pDl~i~~~~~~~~~~~--~~~gi-----p~~~~~~~~~~~~~G 409 (426)
T cd01972 358 SNGQYYQFYNLLKRVKPDFIIFRHGGLFPDAT--VYLGI-----PVVPLNDELNQPQFG 409 (426)
T ss_pred cCCCHHHHHHHHHHhCCCEEEEcCCCccHHHH--HhcCC-----CEEeccccccCCccc
Confidence 22 112221 24589999988754444443 22233 888887776666765
No 191
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=50.37 E-value=26 Score=27.79 Aligned_cols=34 Identities=32% Similarity=0.611 Sum_probs=22.5
Q ss_pred cCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEe
Q 022363 238 GNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 276 (298)
Q Consensus 238 ~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~ 276 (298)
+++.+.=+ ++=++ +-+.+.+++||+++|+.|...
T Consensus 39 gRs~e~K~----~ly~~-l~~~L~~~~gi~p~Dv~I~l~ 72 (82)
T PF14552_consen 39 GRSTEQKK----ALYRA-LAERLAEKLGIRPEDVMIVLV 72 (82)
T ss_dssp ---HHHHH----HHHHH-HHHHHHHHH---GGGEEEEEE
T ss_pred CCCHHHHH----HHHHH-HHHHHHHHcCCCHHHEEEEEE
Confidence 66766665 77777 888899999999999998754
No 192
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=50.08 E-value=34 Score=33.76 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=37.7
Q ss_pred CCccccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 022363 66 SSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (298)
Q Consensus 66 ~~~~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (298)
.+...=++||++++|=.=.+..| -+.+.|+.||+.|+.=+...+-+|
T Consensus 206 ~~~~gdV~gk~~iiVDDiIdTgG---Ti~~Aa~~Lk~~GAk~V~a~~tH~ 252 (314)
T COG0462 206 MNLIGDVEGKDVVIVDDIIDTGG---TIAKAAKALKERGAKKVYAAATHG 252 (314)
T ss_pred eecccccCCCEEEEEeccccccH---HHHHHHHHHHHCCCCeEEEEEEch
Confidence 56788899999998876666655 488999999999998666666665
No 193
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=50.05 E-value=78 Score=31.50 Aligned_cols=76 Identities=22% Similarity=0.205 Sum_probs=47.3
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhh
Q 022363 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTA 148 (298)
Q Consensus 69 ~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A 148 (298)
..+..||++.+.. .|-....+++.|.+.|.++.++....+.+ + .+++. .+.-.+.|...-+ +.+
T Consensus 295 ~~~l~gkrvai~~-------~~~~~~~l~~~L~ElG~~~~~~~~~~~~~--~-----~~~~~-~~~~~~~D~~~~e-~~~ 358 (417)
T cd01966 295 HFYLGGKRVAIAL-------EPDLLAALSSFLAEMGAEIVAAVATTDSP--A-----LEKLP-AEEVVVGDLEDLE-DLA 358 (417)
T ss_pred HHHhCCcEEEEEe-------CHHHHHHHHHHHHHCCCEEEEEEECCCCH--H-----HHhCc-ccceEeCCHHHHH-Hhc
Confidence 3466799998775 45577889999999999998887554421 1 22222 1222223322111 135
Q ss_pred hccCEEEEechh
Q 022363 149 LKADLIVLNTAV 160 (298)
Q Consensus 149 ~~aDLVIaNT~v 160 (298)
.++|++|.|+-.
T Consensus 359 ~~~dllig~s~~ 370 (417)
T cd01966 359 AEADLLVTNSHG 370 (417)
T ss_pred ccCCEEEEcchh
Confidence 579999999873
No 194
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=49.93 E-value=87 Score=31.68 Aligned_cols=109 Identities=15% Similarity=0.128 Sum_probs=62.8
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe--ccCCCCchhhhhhhHHHHHH---cCCceeehhchhHH
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT--IQKPSEEDEVIYSLEHKMWD---RGVQVISAKGQETI 145 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~--~~~G~~~g~v~~~L~~kll~---rgI~v~~~k~~~~i 145 (298)
+..||++.+.. .|-.+..+++.|.+.|.+++++. .+.+..++ ....+++.+ .+..++.+.....+
T Consensus 302 ~l~Gkrv~i~g-------~~~~~~~l~~fl~elGm~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~vi~~~d~~e~ 371 (454)
T cd01973 302 FFANKKVAIFG-------HPDLVIGLAEFCLEVEMKPVLLLLGDDNSKYKK---DPRIKALKEKADYDMEIVTNADLWEL 371 (454)
T ss_pred HhCCCeEEEEc-------CHHHHHHHHHHHHHCCCeEEEEEECCCCcccch---hHHHHHHHhhcCCCceEEECCCHHHH
Confidence 57899997663 46678999999999999987755 22221111 112233322 23456655444444
Q ss_pred H-hh----hccCEEEEechhchHHHHHHhhccCCCC--CCceEEEeeeccccccc
Q 022363 146 N-TA----LKADLIVLNTAVAGKWLDAVLKEDVPRV--LPNVLWWIHEMRGHYFK 193 (298)
Q Consensus 146 ~-~A----~~aDLVIaNT~v~g~wl~~l~~~~~p~~--~~pVIWWIHE~r~~Yf~ 193 (298)
. .+ .++|++|.|+-. +++..= .++|.. ..|+.--++..++-|..
T Consensus 372 ~~~i~~~~~~~dliig~s~~--~~~A~~--~gip~~~~g~Pv~dr~~~~~~~~~G 422 (454)
T cd01973 372 EKRIKNKGLELDLILGHSKG--RYIAID--NNIPMVRVGFPTFDRAGLYRHPVIG 422 (454)
T ss_pred HHHHHhcCCCCCEEEECCcc--HHHHHH--cCCCEEEecCCeeeeccccCCCCCc
Confidence 3 22 358999999963 444422 355544 23665555555555555
No 195
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=49.89 E-value=61 Score=31.75 Aligned_cols=59 Identities=22% Similarity=0.407 Sum_probs=43.0
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC---CchhhhhhhHHHHHHcCCceeeh
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS---EEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~---~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
.|++++| |+=..-+|+|..|.+.|.+|.++...+.. .+.++...+++.+.++||.++..
T Consensus 166 ~~~vvII-------GgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~ 227 (463)
T TIGR02053 166 PESLAVI-------GGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTS 227 (463)
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcC
Confidence 3667776 34356789999999999999999844221 34556667788888889988755
No 196
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=49.77 E-value=1.4e+02 Score=26.12 Aligned_cols=38 Identities=11% Similarity=0.032 Sum_probs=24.2
Q ss_pred EEEEEeccC-CCCCchHHHHHHHHHHHhCCCeEEEEecc
Q 022363 76 LVLLVSHEL-SLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (298)
Q Consensus 76 kILLISHEL-S~TGAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (298)
||-+|.++. +-.--.-++-.+-..+++.|.++.+....
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~g~~v~~~~~~ 39 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDLGVDVEYRGPE 39 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHhCCEEEEECCC
Confidence 466777775 43333345556667788888888776543
No 197
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=49.77 E-value=1.6e+02 Score=29.84 Aligned_cols=76 Identities=22% Similarity=0.201 Sum_probs=49.3
Q ss_pred cCCCCCchHHHHHHHHHHH-hCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc---h-----hHHHh--hhcc
Q 022363 83 ELSLSGGPLLLMELAFLLR-GVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG---Q-----ETINT--ALKA 151 (298)
Q Consensus 83 ELS~TGAPLlLleLA~~Lk-q~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~---~-----~~i~~--A~~a 151 (298)
=.+.+|=--....||.+|+ +.|..|.++.+.-- ......-|+....+.|++++.... . +.++. ..++
T Consensus 106 G~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~--R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~~~ 183 (428)
T TIGR00959 106 GLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY--RPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKENGF 183 (428)
T ss_pred CCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc--chHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhcCC
Confidence 5677899999999999987 57999988884421 111222233444445888885421 1 12222 3579
Q ss_pred CEEEEechh
Q 022363 152 DLIVLNTAV 160 (298)
Q Consensus 152 DLVIaNT~v 160 (298)
|+||+.|+-
T Consensus 184 DvVIIDTaG 192 (428)
T TIGR00959 184 DVVIVDTAG 192 (428)
T ss_pred CEEEEeCCC
Confidence 999999996
No 198
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=49.65 E-value=64 Score=31.90 Aligned_cols=59 Identities=22% Similarity=0.359 Sum_probs=44.4
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC---CCchhhhhhhHHHHHHcCCceeeh
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP---SEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G---~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
.|++++| |+=..=+|+|..|.+.|.+|.++..... ..+.++...+.+.+.++||++...
T Consensus 166 ~~~vvII-------GgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~ 227 (450)
T TIGR01421 166 PKRVVIV-------GAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKL 227 (450)
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcC
Confidence 3666666 4446789999999999999999884432 244566677888888999988754
No 199
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=49.65 E-value=59 Score=32.14 Aligned_cols=65 Identities=23% Similarity=0.237 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchh-HHH--hhhccCEEEEech
Q 022363 93 LMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE-TIN--TALKADLIVLNTA 159 (298)
Q Consensus 93 LleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~-~i~--~A~~aDLVIaNT~ 159 (298)
++.+++.|.+.|.+|+.+...-. .+.......+.+.+.++.+......+ ... ...++|++|.|+-
T Consensus 292 ~~~la~~L~elGmevv~~~t~~~--~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~pDl~Ig~s~ 359 (416)
T cd01980 292 ELLVARLLIESGAEVPYVSTSIP--KTSLSAPDYEWLSALGVEVRYRKSLEDDIAAVEEYRPDLAIGTTP 359 (416)
T ss_pred hHHHHHHHHHcCCEEEEEecCCC--ChhhhHHHHHHHHhcCCccccCCCHHHHHHHHhhcCCCEEEeCCh
Confidence 66799999999999998885321 01111233445544455443222211 122 2469999999966
No 200
>PRK12939 short chain dehydrogenase; Provisional
Probab=49.64 E-value=91 Score=26.72 Aligned_cols=79 Identities=18% Similarity=0.155 Sum_probs=45.1
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCc--eee--hhchhHHH-
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ--VIS--AKGQETIN- 146 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~--v~~--~k~~~~i~- 146 (298)
|++|++|++.- +| -+=.++|+.|.+.|++|.++. +..+ .. ..+.+++...+.+ ++. -...+++.
T Consensus 5 ~~~~~vlItGa----~g--~iG~~la~~l~~~G~~v~~~~-r~~~---~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 73 (250)
T PRK12939 5 LAGKRALVTGA----AR--GLGAAFAEALAEAGATVAFND-GLAA---EA-RELAAALEAAGGRAHAIAADLADPASVQR 73 (250)
T ss_pred CCCCEEEEeCC----CC--hHHHHHHHHHHHcCCEEEEEe-CCHH---HH-HHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence 67888887652 23 266788999999999987774 3221 11 1234455444432 221 12222222
Q ss_pred ---h----hhccCEEEEechhc
Q 022363 147 ---T----ALKADLIVLNTAVA 161 (298)
Q Consensus 147 ---~----A~~aDLVIaNT~v~ 161 (298)
. ..++|.||.|..+.
T Consensus 74 ~~~~~~~~~~~id~vi~~ag~~ 95 (250)
T PRK12939 74 FFDAAAAALGGLDGLVNNAGIT 95 (250)
T ss_pred HHHHHHHHcCCCCEEEECCCCC
Confidence 1 24789999997653
No 201
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=49.63 E-value=72 Score=31.18 Aligned_cols=59 Identities=20% Similarity=0.385 Sum_probs=42.5
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC---CCchhhhhhhHHHHHHcCCceeeh
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP---SEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G---~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
.|++++|. |+ ..-+|+|..|++.|.+|.++..... ..+.++...+++.+.++||.+...
T Consensus 172 ~~~vvVvG------gG-~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~ 233 (462)
T PRK06416 172 PKSLVVIG------GG-YIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTG 233 (462)
T ss_pred CCeEEEEC------CC-HHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeC
Confidence 46677774 33 4678999999999999998874321 133456667788888889988755
No 202
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=49.59 E-value=1e+02 Score=29.71 Aligned_cols=86 Identities=10% Similarity=0.101 Sum_probs=52.1
Q ss_pred ccEEEEEeccCC--CCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHH-HcCCceeeh-hchhHHHhhh
Q 022363 74 SKLVLLVSHELS--LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMW-DRGVQVISA-KGQETINTAL 149 (298)
Q Consensus 74 ~KkILLISHELS--~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll-~rgI~v~~~-k~~~~i~~A~ 149 (298)
++-+|++.|--. ....+--+-++.+.|++.|.++.++.-.+++.+..+...+.+... ..++.++.. .+.+-+....
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~ 280 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLK 280 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHH
Confidence 366778899765 445556688999999888866666553333323333333332221 124555544 3444455788
Q ss_pred ccCEEEEech
Q 022363 150 KADLIVLNTA 159 (298)
Q Consensus 150 ~aDLVIaNT~ 159 (298)
.+|+||.|+-
T Consensus 281 ~a~~vitdSS 290 (365)
T TIGR03568 281 NADAVIGNSS 290 (365)
T ss_pred hCCEEEEcCh
Confidence 9999999983
No 203
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=49.45 E-value=72 Score=31.43 Aligned_cols=59 Identities=24% Similarity=0.487 Sum_probs=42.9
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccC---CCCchhhhhhhHHHHHHcCCceeeh
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK---PSEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~---G~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
.|+|++| |+=..-+|+|..|++.|.+|.++-... +..+.++...+++.+.++||++...
T Consensus 172 ~~~vvVI-------GgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~ 233 (466)
T PRK07818 172 PKSIVIA-------GAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTG 233 (466)
T ss_pred CCeEEEE-------CCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEEC
Confidence 4666666 333468999999999999999876322 1234556677888898999998865
No 204
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=49.27 E-value=37 Score=32.01 Aligned_cols=62 Identities=19% Similarity=0.181 Sum_probs=41.9
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCe-EEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTK-VNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG 141 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~-V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~ 141 (298)
.+||++++| |+-..-+|+|..|.+.|.. |.++..+.. ...+....+.+++.++||+++....
T Consensus 170 ~~g~~vvVi-------G~G~~g~e~A~~l~~~g~~~Vtvi~~~~~-~~~~~~~~~~~~l~~~gi~i~~~~~ 232 (352)
T PRK12770 170 VEGKKVVVV-------GAGLTAVDAALEAVLLGAEKVYLAYRRTI-NEAPAGKYEIERLIARGVEFLELVT 232 (352)
T ss_pred cCCCEEEEE-------CCCHHHHHHHHHHHHcCCCeEEEEeecch-hhCCCCHHHHHHHHHcCCEEeeccC
Confidence 357888888 4456789999999988997 888763321 1111223345678888999887643
No 205
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=48.97 E-value=65 Score=33.54 Aligned_cols=69 Identities=13% Similarity=0.056 Sum_probs=42.9
Q ss_pred CchHHHHHHHHHHHhCCCeEEEEeccC-CCCchhhhhhhHHHHHHcCCceeehhc---hhHHH--hhhccCEEEE
Q 022363 88 GGPLLLMELAFLLRGVGTKVNWITIQK-PSEEDEVIYSLEHKMWDRGVQVISAKG---QETIN--TALKADLIVL 156 (298)
Q Consensus 88 GAPLlLleLA~~Lkq~G~~V~vL~~~~-G~~~g~v~~~L~~kll~rgI~v~~~k~---~~~i~--~A~~aDLVIa 156 (298)
|.|-+-.-..+.|.+.|++++.+..+. .+.+.....++.+...+.|||++.-.. .+.+. ...++|++|+
T Consensus 7 g~~~~a~~~l~~L~~~~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~~~~~~~~~~~l~~~~~D~iv~ 81 (660)
T PRK08125 7 AYHDIGCVGIEALLAAGYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPEDVNHPLWVERIRELAPDVIFS 81 (660)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeCCCCcHHHHHHHHhcCCCEEEE
Confidence 555555555677777899999555432 222223334688888899999985321 12222 2469999985
No 206
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=48.96 E-value=60 Score=29.00 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCC-CchhhhhhhHHHHHHc-CCceeehhchhHHH-----hhhccCEEEEechhch--
Q 022363 92 LLMELAFLLRGVGTKVNWITIQKPS-EEDEVIYSLEHKMWDR-GVQVISAKGQETIN-----TALKADLIVLNTAVAG-- 162 (298)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~-~~g~v~~~L~~kll~r-gI~v~~~k~~~~i~-----~A~~aDLVIaNT~v~g-- 162 (298)
=..++|+.+.+.|.+-..++.-.+. ........+.+++.+. ++|+.-.-+.++++ ....+|.|++||..--
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~~~ 110 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALENP 110 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhcCH
Confidence 3567889999999986666632222 2334445666677665 78888765555543 1236999999998642
Q ss_pred HHHHHHh
Q 022363 163 KWLDAVL 169 (298)
Q Consensus 163 ~wl~~l~ 169 (298)
.++.++.
T Consensus 111 ~~~~~~~ 117 (232)
T TIGR03572 111 DLIEEAA 117 (232)
T ss_pred HHHHHHH
Confidence 3455544
No 207
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=48.67 E-value=58 Score=29.31 Aligned_cols=58 Identities=17% Similarity=0.211 Sum_probs=38.6
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe---ccCCCCchhhhhhhHHHHHHcCCceeeh
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT---IQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~---~~~G~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
-+|++||+|= |.=.||+ -+..+.+.+++.|.+|+-+. .+. .. +=.+++.+.|+|+..-
T Consensus 115 ~~G~rVLIVD-DvvtTGg--T~~a~~~ll~~aGa~Vvgv~~lvd~~-~~------~g~~~l~~~gvpv~sL 175 (191)
T TIGR01744 115 SDQDRVLIID-DFLANGQ--AAHGLVDIAKQAGAKIAGIGIVIEKS-FQ------NGRQELVELGYRVESL 175 (191)
T ss_pred CCcCEEEEEE-ehhccCh--HHHHHHHHHHHCCCEEEEEEEEEEec-Cc------cHHHHHHhcCCcEEEE
Confidence 3899988885 6666777 57788899999999854333 232 10 1145677778887643
No 208
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=48.40 E-value=65 Score=28.50 Aligned_cols=58 Identities=16% Similarity=0.229 Sum_probs=39.4
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEE---EEeccCCCCchhhhhhhHHHHHHcCCceeeh
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN---WITIQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~---vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
+-+|++||+|=.-.+ ||+ -+.++++.|++.|.+|+ ++..+. + +-.+++.+.|+++..=
T Consensus 104 ~~~g~~VlIVDDvit-TG~--Tl~~~~~~l~~~Ga~vv~~~vlvdr~-~-------~~~~~l~~~g~~v~sL 164 (176)
T PRK13812 104 LDEGEEVVVLEDIAT-TGQ--SAVDAVEALREAGATVNRVLVVVDRE-E-------GARENLADHDVELEAL 164 (176)
T ss_pred CCCcCEEEEEEEeeC-CCH--HHHHHHHHHHHCCCeEEEEEEEEECC-c-------chHHHHHhcCCcEEEE
Confidence 348999999865555 555 57888999999998854 333443 2 1135677778888743
No 209
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.13 E-value=1e+02 Score=26.30 Aligned_cols=79 Identities=22% Similarity=0.276 Sum_probs=43.7
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcC--Cceee--hhchhHHH--
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRG--VQVIS--AKGQETIN-- 146 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rg--I~v~~--~k~~~~i~-- 146 (298)
++|+||++.- ||+ +=.++++.|.+.|++|.++..+..+.. ..+.+.+.+.+ +.++. -...+++.
T Consensus 4 ~~~~ilI~Ga----sg~--iG~~la~~l~~~g~~v~~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 73 (247)
T PRK05565 4 MGKVAIVTGA----SGG--IGRAIAELLAKEGAKVVIAYDINEEAA----QELLEEIKEEGGDAIAVKADVSSEEDVENL 73 (247)
T ss_pred CCCEEEEeCC----CcH--HHHHHHHHHHHCCCEEEEEcCCCHHHH----HHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 4677888753 232 557888888899999988744433211 12344444433 32221 12222232
Q ss_pred ------hhhccCEEEEechhc
Q 022363 147 ------TALKADLIVLNTAVA 161 (298)
Q Consensus 147 ------~A~~aDLVIaNT~v~ 161 (298)
....+|.||.|....
T Consensus 74 ~~~~~~~~~~id~vi~~ag~~ 94 (247)
T PRK05565 74 VEQIVEKFGKIDILVNNAGIS 94 (247)
T ss_pred HHHHHHHhCCCCEEEECCCcC
Confidence 123799999987653
No 210
>PRK06057 short chain dehydrogenase; Provisional
Probab=48.10 E-value=1.3e+02 Score=26.41 Aligned_cols=37 Identities=14% Similarity=0.081 Sum_probs=27.0
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (298)
..|+||+||++.- + .-+=.++++.|.+.|++|.++..
T Consensus 3 ~~~~~~~vlItGa----s--ggIG~~~a~~l~~~G~~v~~~~r 39 (255)
T PRK06057 3 QRLAGRVAVITGG----G--SGIGLATARRLAAEGATVVVGDI 39 (255)
T ss_pred ccCCCCEEEEECC----C--chHHHHHHHHHHHcCCEEEEEeC
Confidence 3478998887542 2 33667888999999999877764
No 211
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=47.82 E-value=69 Score=25.25 Aligned_cols=39 Identities=26% Similarity=0.195 Sum_probs=30.7
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (298)
++.-+++||| +|-.--+.+.++..|+.|.+++.+++...
T Consensus 46 ~~d~~I~iS~----sG~t~e~~~~~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 46 EDTLVIAISQ----SGETADTLAALRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred CCcEEEEEeC----CcCCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 3445666666 66666899999999999999999996644
No 212
>PRK06182 short chain dehydrogenase; Validated
Probab=47.75 E-value=96 Score=27.53 Aligned_cols=75 Identities=23% Similarity=0.270 Sum_probs=43.4
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceee--hhchhHHH---
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS--AKGQETIN--- 146 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~--~k~~~~i~--- 146 (298)
|++|++|+.. -+|+ +=.++++.|.+.|++|..+..+ . + .+ +++...++..+. -...+.+.
T Consensus 1 ~~~k~vlItG----asgg--iG~~la~~l~~~G~~V~~~~r~-~---~----~l-~~~~~~~~~~~~~Dv~~~~~~~~~~ 65 (273)
T PRK06182 1 MQKKVALVTG----ASSG--IGKATARRLAAQGYTVYGAARR-V---D----KM-EDLASLGVHPLSLDVTDEASIKAAV 65 (273)
T ss_pred CCCCEEEEEC----CCCh--HHHHHHHHHHHCCCEEEEEeCC-H---H----HH-HHHHhCCCeEEEeeCCCHHHHHHHH
Confidence 5677777664 2333 5667899999999998877633 2 1 11 233344555542 12222222
Q ss_pred -----hhhccCEEEEechhc
Q 022363 147 -----TALKADLIVLNTAVA 161 (298)
Q Consensus 147 -----~A~~aDLVIaNT~v~ 161 (298)
....+|.||.|....
T Consensus 66 ~~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 66 DTIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred HHHHHhcCCCCEEEECCCcC
Confidence 123789999997653
No 213
>PRK07890 short chain dehydrogenase; Provisional
Probab=47.65 E-value=97 Score=26.86 Aligned_cols=80 Identities=19% Similarity=0.197 Sum_probs=45.5
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--e--ehhchhHH
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--I--SAKGQETI 145 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v--~--~~k~~~~i 145 (298)
.||.+|+||+.. |+.-+=.++|+.|-+.|.+|.++... .+ .. ..+.+++.+.+..+ + +-...+++
T Consensus 1 ~~l~~k~vlItG------a~~~IG~~la~~l~~~G~~V~~~~r~-~~---~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~ 69 (258)
T PRK07890 1 MLLKGKVVVVSG------VGPGLGRTLAVRAARAGADVVLAART-AE---RL-DEVAAEIDDLGRRALAVPTDITDEDQC 69 (258)
T ss_pred CccCCCEEEEEC------CCCcHHHHHHHHHHHcCCEEEEEeCC-HH---HH-HHHHHHHHHhCCceEEEecCCCCHHHH
Confidence 378888877654 33347778999999999988766532 21 11 23344444333322 1 11222222
Q ss_pred H--------hhhccCEEEEechh
Q 022363 146 N--------TALKADLIVLNTAV 160 (298)
Q Consensus 146 ~--------~A~~aDLVIaNT~v 160 (298)
. ....+|.||.|...
T Consensus 70 ~~~~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 70 ANLVALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHHHHHHcCCccEEEECCcc
Confidence 2 12478999998754
No 214
>PRK06194 hypothetical protein; Provisional
Probab=47.53 E-value=1.2e+02 Score=26.93 Aligned_cols=79 Identities=13% Similarity=0.208 Sum_probs=44.7
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--ee--hhchhHHHh
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--IS--AKGQETINT 147 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v--~~--~k~~~~i~~ 147 (298)
|++|++|+.. |+-=+=.++++.|.+.|++|.++... .+ -...+.+++...|..+ +. -...+++..
T Consensus 4 ~~~k~vlVtG------asggIG~~la~~l~~~G~~V~~~~r~-~~----~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~ 72 (287)
T PRK06194 4 FAGKVAVITG------AASGFGLAFARIGAALGMKLVLADVQ-QD----ALDRAVAELRAQGAEVLGVRTDVSDAAQVEA 72 (287)
T ss_pred CCCCEEEEeC------CccHHHHHHHHHHHHCCCEEEEEeCC-hH----HHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence 5678777643 22336678999999999998766532 21 1112344555445443 21 122223321
Q ss_pred --------hhccCEEEEechhc
Q 022363 148 --------ALKADLIVLNTAVA 161 (298)
Q Consensus 148 --------A~~aDLVIaNT~v~ 161 (298)
....|.||.|....
T Consensus 73 ~~~~~~~~~g~id~vi~~Ag~~ 94 (287)
T PRK06194 73 LADAALERFGAVHLLFNNAGVG 94 (287)
T ss_pred HHHHHHHHcCCCCEEEECCCCC
Confidence 23589999998764
No 215
>PRK14694 putative mercuric reductase; Provisional
Probab=47.44 E-value=82 Score=31.13 Aligned_cols=59 Identities=20% Similarity=0.416 Sum_probs=43.6
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccC--CCCchhhhhhhHHHHHHcCCceeeh
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK--PSEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~--G~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
+|++++| |+=..-+|+|..|++.|.+|.++.... +....++...+++.+.++||.+...
T Consensus 178 ~~~vvVi-------G~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~~ 238 (468)
T PRK14694 178 PERLLVI-------GASVVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLKQ 238 (468)
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHHcCCeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEeC
Confidence 5677777 333468899999999999999997321 1133566677888888899998865
No 216
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=47.27 E-value=1e+02 Score=23.44 Aligned_cols=56 Identities=13% Similarity=-0.082 Sum_probs=35.2
Q ss_pred EEEEeccCCCC-CchHHHHHHHHHHHhCC--CeEEEEeccC-CCCchhhhhhhHHHHHHcCCce
Q 022363 77 VLLVSHELSLS-GGPLLLMELAFLLRGVG--TKVNWITIQK-PSEEDEVIYSLEHKMWDRGVQV 136 (298)
Q Consensus 77 ILLISHELS~T-GAPLlLleLA~~Lkq~G--~~V~vL~~~~-G~~~g~v~~~L~~kll~rgI~v 136 (298)
+||++|=.... .+.-.+.++++.|++.. .+|.+-.... .+. +....+++.+.|+..
T Consensus 2 lllv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~~~~P~----i~~~l~~l~~~g~~~ 61 (101)
T cd03409 2 LLVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQSGLGPD----TEEAIRELAEEGYQR 61 (101)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC----HHHHHHHHHHcCCCe
Confidence 78999988877 77778999999998763 4555443333 222 122245566655433
No 217
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=47.20 E-value=1.7e+02 Score=24.84 Aligned_cols=42 Identities=21% Similarity=0.056 Sum_probs=30.6
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (298)
||+++||+-+-+.+.-.--+ .-++.+|+..|++|+-|..+-+
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~--~iv~~~lr~~G~eVi~LG~~vp 42 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGN--KILDRALTEAGFEVINLGVMTS 42 (137)
T ss_pred CCCCEEEEEeCCCChhHHHH--HHHHHHHHHCCCEEEECCCCCC
Confidence 68888998876666553323 3456789999999999985554
No 218
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.17 E-value=1.1e+02 Score=26.17 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=23.4
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (298)
+++|+||++. -+| -+=.++++.|.+.|++|.++..
T Consensus 3 ~~~~~vlItG----asg--~iG~~l~~~l~~~G~~V~~~~r 37 (251)
T PRK07231 3 LEGKVAIVTG----ASS--GIGEGIARRFAAEGARVVVTDR 37 (251)
T ss_pred cCCcEEEEEC----CCC--hHHHHHHHHHHHCCCEEEEEeC
Confidence 4667666652 222 2556889999999999766653
No 219
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=47.11 E-value=89 Score=32.43 Aligned_cols=103 Identities=21% Similarity=0.162 Sum_probs=62.1
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHH-hCCCeEEEEeccCCCCchhhhhhhHHHHHHc--CCceeehhchhH-H
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLR-GVGTKVNWITIQKPSEEDEVIYSLEHKMWDR--GVQVISAKGQET-I 145 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~Lk-q~G~~V~vL~~~~G~~~g~v~~~L~~kll~r--gI~v~~~k~~~~-i 145 (298)
.+..|||+.+. |.|-.+..++..|. +.|.+++....+.+. .++. ++.+... +.-++++....+ .
T Consensus 324 ~~L~GKrvai~-------~gg~~~~~~~~~l~~ElGmevv~~~t~~~~-~~d~----~~~~~~~~~~~~~i~D~~~~e~~ 391 (513)
T TIGR01861 324 ERLKGKKVCLW-------PGGSKLWHWAHVIEEEMGLKVVSVYSKFGH-QGDM----EKGVARCGEGALAIDDPNELEGL 391 (513)
T ss_pred HhcCCCEEEEE-------CCchHHHHHHHHHHHhCCCEEEEEeccCCC-HHHH----HHHHHhCCCCcEEecCCCHHHHH
Confidence 57799999886 34668899999998 699999888765431 1222 2222222 444555433222 1
Q ss_pred H--hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc
Q 022363 146 N--TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK 193 (298)
Q Consensus 146 ~--~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~ 193 (298)
+ ...++|++|.|+=- +++. .|.++ |.+--.+|-++-|..
T Consensus 392 ~~l~~~~~Dllig~s~~--~~~A--~k~gI-----P~ld~~~~~~~p~~G 432 (513)
T TIGR01861 392 EAMEMLKPDIILTGKRP--GEVS--KKMRV-----PYLNAHAYHNGPYKG 432 (513)
T ss_pred HHHHhcCCCEEEecCcc--chhH--hhcCC-----CEEEccCCCCCCcch
Confidence 2 35689999999863 3332 12344 556556665555544
No 220
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=47.08 E-value=82 Score=27.41 Aligned_cols=58 Identities=19% Similarity=0.347 Sum_probs=38.7
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe---ccCCCCchhhhhhhHHHHHHc-CCceee
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT---IQKPSEEDEVIYSLEHKMWDR-GVQVIS 138 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~---~~~G~~~g~v~~~L~~kll~r-gI~v~~ 138 (298)
..+|++||+| .|.-.||. -|.+.+..|++.|.+|+-+. .++. . +=.+++.+. |+|+..
T Consensus 105 ~~~g~~VlIV-DDvi~TG~--Tl~~a~~~l~~~Ga~v~~~~vlvdr~~-~------~~~~~l~~~~gv~~~s 166 (173)
T TIGR00336 105 LLEGDKVVVV-EDVITTGT--SILEAVEIIQAAGGQVAGVIIAVDRQE-R------SAGQEFEKEYGLPVIS 166 (173)
T ss_pred CCCCCEEEEE-eccccChH--HHHHHHHHHHHcCCeEEEEEEEEecCc-h------hHHHHHHHhcCCeEEE
Confidence 5688988887 56666777 68899999999999965433 3321 0 113455544 888764
No 221
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=47.06 E-value=39 Score=29.65 Aligned_cols=89 Identities=17% Similarity=0.152 Sum_probs=44.4
Q ss_pred cccEEEEEeccCCCCCc--hH-HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc----CCceeehhchhHH
Q 022363 73 KSKLVLLVSHELSLSGG--PL-LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR----GVQVISAKGQETI 145 (298)
Q Consensus 73 ~~KkILLISHELS~TGA--PL-lLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~r----gI~v~~~k~~~~i 145 (298)
.++.+++|.+-.+...- |. -..+|++.|.+.|..|+++.+... .+.+. .+++.+. .+.........++
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~l~e~ 177 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEE-QEKEI----ADQIAAGLQNPVINLAGKTSLREL 177 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHH-HHHHH----HHHHHTTHTTTTEEETTTS-HHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchH-HHHHH----HHHHHHhcccceEeecCCCCHHHH
Confidence 47788888887766422 22 347999999999967655552210 01122 2223222 1222222223332
Q ss_pred -HhhhccCEEEEechhchHHHH
Q 022363 146 -NTALKADLIVLNTAVAGKWLD 166 (298)
Q Consensus 146 -~~A~~aDLVIaNT~v~g~wl~ 166 (298)
.....+|++|.|=-...+.=.
T Consensus 178 ~ali~~a~~~I~~Dtg~~HlA~ 199 (247)
T PF01075_consen 178 AALISRADLVIGNDTGPMHLAA 199 (247)
T ss_dssp HHHHHTSSEEEEESSHHHHHHH
T ss_pred HHHHhcCCEEEecCChHHHHHH
Confidence 257799999999765444333
No 222
>PRK06701 short chain dehydrogenase; Provisional
Probab=46.89 E-value=1.7e+02 Score=26.82 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=28.1
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 022363 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (298)
Q Consensus 69 ~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (298)
...+++|++|+++- +.-+=.++++.|.+.|++|.++..
T Consensus 41 ~~~~~~k~iLItGa------sggIG~~la~~l~~~G~~V~l~~r 78 (290)
T PRK06701 41 SGKLKGKVALITGG------DSGIGRAVAVLFAKEGADIAIVYL 78 (290)
T ss_pred ccCCCCCEEEEeCC------CcHHHHHHHHHHHHCCCEEEEEeC
Confidence 35778898887652 233667899999999999877654
No 223
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=46.80 E-value=80 Score=31.32 Aligned_cols=59 Identities=15% Similarity=0.310 Sum_probs=42.9
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC---CCchhhhhhhHHHHHHcCCceeeh
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP---SEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G---~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
+|+|++| |+=..-+|+|..|++.|.+|.++..... ..+.++...+.+.|.++||++...
T Consensus 183 ~~~vvVv-------GgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~ 244 (475)
T PRK06327 183 PKKLAVI-------GAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLG 244 (475)
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeC
Confidence 4666666 4444678999999999999998874322 123556667788888899988855
No 224
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=46.69 E-value=66 Score=30.09 Aligned_cols=81 Identities=25% Similarity=0.251 Sum_probs=51.0
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHh----CC--CeEEEEeccCC---CCchhhhhhhHHHHHHcCCceeehhchhH
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRG----VG--TKVNWITIQKP---SEEDEVIYSLEHKMWDRGVQVISAKGQET 144 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq----~G--~~V~vL~~~~G---~~~g~v~~~L~~kll~rgI~v~~~k~~~~ 144 (298)
+|+|++| |+...-+|+|..|.+ .| .+|.++. ... ....++...+++.+.++||++........
T Consensus 145 ~~~vvVv-------G~G~~g~E~A~~l~~~~~~~g~~~~V~li~-~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~ 216 (364)
T TIGR03169 145 TKRLAVV-------GGGAAGVEIALALRRRLPKRGLRGQVTLIA-GASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTR 216 (364)
T ss_pred CceEEEE-------CCCHHHHHHHHHHHHHHHhcCCCceEEEEe-CCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEE
Confidence 4678777 566678888877764 45 4787773 211 12234556677888888999887532222
Q ss_pred HH---------hhhccCEEEEechhch
Q 022363 145 IN---------TALKADLIVLNTAVAG 162 (298)
Q Consensus 145 i~---------~A~~aDLVIaNT~v~g 162 (298)
++ ....+|+||.-|-...
T Consensus 217 i~~~~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 217 GPDGALILADGRTLPADAILWATGARA 243 (364)
T ss_pred EcCCeEEeCCCCEEecCEEEEccCCCh
Confidence 21 2347899998876543
No 225
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=46.55 E-value=14 Score=30.19 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHH----------HhhhccCEEEEech
Q 022363 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETI----------NTALKADLIVLNTA 159 (298)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i----------~~A~~aDLVIaNT~ 159 (298)
+=.-+|-.|.+.|++|.++...+ ..+.+.+.|+.+....+...+ .....+|+||+-|=
T Consensus 9 iG~~~a~~L~~~g~~V~l~~r~~----------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 9 IGSLYAARLAQAGHDVTLVSRSP----------RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp HHHHHHHHHHHTTCEEEEEESHH----------HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred HHHHHHHHHHHCCCceEEEEccc----------cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 34457888888999999999442 135577888887766422211 13679999999874
No 226
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=46.46 E-value=60 Score=28.28 Aligned_cols=73 Identities=16% Similarity=0.149 Sum_probs=49.5
Q ss_pred HHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhch--hHHH-hhhccCEEEEechhc--------h
Q 022363 94 MELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ--ETIN-TALKADLIVLNTAVA--------G 162 (298)
Q Consensus 94 leLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~--~~i~-~A~~aDLVIaNT~v~--------g 162 (298)
-.+++.|.+.|++|.+++.+.. ....+++.+.|+.++..... +++. .+.++|.||.+|... -
T Consensus 12 ~~v~~~L~~~~~~V~~l~R~~~-------~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~ 84 (233)
T PF05368_consen 12 RSVVRALLSAGFSVRALVRDPS-------SDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSHPSELEQQK 84 (233)
T ss_dssp HHHHHHHHHTTGCEEEEESSSH-------HHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHH
T ss_pred HHHHHHHHhCCCCcEEEEeccc-------hhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcchhhhhhhhh
Confidence 4566777779999999995531 23467788889999866433 4454 577999999999832 3
Q ss_pred HHHHHHhhccC
Q 022363 163 KWLDAVLKEDV 173 (298)
Q Consensus 163 ~wl~~l~~~~~ 173 (298)
..+++..+..+
T Consensus 85 ~li~Aa~~agV 95 (233)
T PF05368_consen 85 NLIDAAKAAGV 95 (233)
T ss_dssp HHHHHHHHHT-
T ss_pred hHHHhhhcccc
Confidence 45555555555
No 227
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=46.35 E-value=1.2e+02 Score=29.20 Aligned_cols=80 Identities=10% Similarity=0.023 Sum_probs=47.8
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhc
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~ 150 (298)
-.+|++|.+|++ .++ +.-.++..+...|.+|.+.+-.+=...+++....++...+.|..+...... +...+
T Consensus 144 ~l~g~kva~vGD-~~~-----v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~---~a~~~ 214 (302)
T PRK14805 144 DVSKVKLAYVGD-GNN-----VTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI---EAIEG 214 (302)
T ss_pred CcCCcEEEEEcC-CCc-----cHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH---HHHCC
Confidence 368999999997 343 455666666777999999984332222333222222234457665322112 34679
Q ss_pred cCEEEEech
Q 022363 151 ADLIVLNTA 159 (298)
Q Consensus 151 aDLVIaNT~ 159 (298)
+|.|+.-+.
T Consensus 215 aDvvy~~~w 223 (302)
T PRK14805 215 HDAIYTDTW 223 (302)
T ss_pred CCEEEeece
Confidence 999998663
No 228
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=46.26 E-value=78 Score=27.96 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=40.4
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc-CCceeeh
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISA 139 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~r-gI~v~~~ 139 (298)
.++|+|++|. +-..-+|+|..|.+.|.+|.++.....-. ....+.+.+.++ |++++..
T Consensus 139 ~~~~~v~ViG-------~G~~~~e~a~~l~~~~~~V~~v~~~~~~~---~~~~~~~~l~~~~gv~~~~~ 197 (300)
T TIGR01292 139 FKNKEVAVVG-------GGDSAIEEALYLTRIAKKVTLVHRRDKFR---AEKILLDRLRKNPNIEFLWN 197 (300)
T ss_pred cCCCEEEEEC-------CChHHHHHHHHHHhhcCEEEEEEeCcccC---cCHHHHHHHHhCCCeEEEec
Confidence 3667777763 33467899999999999999988554321 223456777777 8888754
No 229
>PRK07806 short chain dehydrogenase; Provisional
Probab=46.24 E-value=1.4e+02 Score=25.72 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=25.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (298)
|++|++|+.. -+|+ +=.++++.|.+.|++|.++..
T Consensus 4 ~~~k~vlItG----asgg--iG~~l~~~l~~~G~~V~~~~r 38 (248)
T PRK07806 4 LPGKTALVTG----SSRG--IGADTAKILAGAGAHVVVNYR 38 (248)
T ss_pred CCCcEEEEEC----CCCc--HHHHHHHHHHHCCCEEEEEeC
Confidence 5678777764 2333 567888999999999877653
No 230
>PRK12742 oxidoreductase; Provisional
Probab=46.19 E-value=1.3e+02 Score=25.67 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=24.9
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (298)
+++|+||+..- +|+ +=.++++.|.+.|++|.++..
T Consensus 4 ~~~k~vlItGa----sgg--IG~~~a~~l~~~G~~v~~~~~ 38 (237)
T PRK12742 4 FTGKKVLVLGG----SRG--IGAAIVRRFVTDGANVRFTYA 38 (237)
T ss_pred CCCCEEEEECC----CCh--HHHHHHHHHHHCCCEEEEecC
Confidence 56887776532 232 667889999999999876653
No 231
>COG1647 Esterase/lipase [General function prediction only]
Probab=45.81 E-value=1.5e+02 Score=28.63 Aligned_cols=101 Identities=16% Similarity=0.127 Sum_probs=69.5
Q ss_pred CCCccccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhH
Q 022363 65 KSSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQET 144 (298)
Q Consensus 65 ~~~~~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~ 144 (298)
+|.|.-|=.|++-+|.=| +-||.|-=+=.|+++|.+.|++|+.=.-.|-+ -+-+.|++-|..---......
T Consensus 5 ~p~pf~f~~G~~AVLllH--GFTGt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG-------~~~e~fl~t~~~DW~~~v~d~ 75 (243)
T COG1647 5 PPKPFTFEGGNRAVLLLH--GFTGTPRDVRMLGRYLNENGYTVYAPRYPGHG-------TLPEDFLKTTPRDWWEDVEDG 75 (243)
T ss_pred CCCCeeeccCCEEEEEEe--ccCCCcHHHHHHHHHHHHCCceEecCCCCCCC-------CCHHHHhcCCHHHHHHHHHHH
Confidence 467888999999999999 66899999999999999999999876533221 224456555443221111112
Q ss_pred HH-h-hhccCEEEEechhchHHHHHHhhccCC
Q 022363 145 IN-T-ALKADLIVLNTAVAGKWLDAVLKEDVP 174 (298)
Q Consensus 145 i~-~-A~~aDLVIaNT~v~g~wl~~l~~~~~p 174 (298)
-+ . -..+|=|.+.-+..|=.+...+.+++|
T Consensus 76 Y~~L~~~gy~eI~v~GlSmGGv~alkla~~~p 107 (243)
T COG1647 76 YRDLKEAGYDEIAVVGLSMGGVFALKLAYHYP 107 (243)
T ss_pred HHHHHHcCCCeEEEEeecchhHHHHHHHhhCC
Confidence 22 1 257888888888888877777766664
No 232
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=45.77 E-value=1.6e+02 Score=30.53 Aligned_cols=84 Identities=19% Similarity=0.307 Sum_probs=56.8
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHH----Hhhh
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETI----NTAL 149 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i----~~A~ 149 (298)
.+.|.||+- +.+|=--.+..||..|.+.|..|-++.....- -+ -+.-|..-....|++++.......+ ..+.
T Consensus 241 ~~vI~LVGp--tGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R-ia-AvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 241 VQTIALIGP--TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR-IG-TVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CcEEEEECC--CCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc-hH-HHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 467888887 88899999999999999999999988843221 01 1122333333448998855433333 2222
Q ss_pred ---ccCEEEEechhc
Q 022363 150 ---KADLIVLNTAVA 161 (298)
Q Consensus 150 ---~aDLVIaNT~v~ 161 (298)
++|+||+-|+-.
T Consensus 317 ~~~~~DvVLIDTaGR 331 (436)
T PRK11889 317 EEARVDYILIDTAGK 331 (436)
T ss_pred hccCCCEEEEeCccc
Confidence 589999999854
No 233
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=45.73 E-value=1.5e+02 Score=29.99 Aligned_cols=85 Identities=16% Similarity=0.227 Sum_probs=52.8
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe-ccCCCCchhhhhhhHHHHHHc---CCceeehhchhHHH
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT-IQKPSEEDEVIYSLEHKMWDR---GVQVISAKGQETIN 146 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~-~~~G~~~g~v~~~L~~kll~r---gI~v~~~k~~~~i~ 146 (298)
+.+||++.+.. .|-.+..+++.|.+.|..+.++. +.+.+..++ +...+++.+. +..++.+.....+.
T Consensus 309 ~l~Gkrvai~~-------~~~~~~~l~~~l~elGm~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~vv~~~d~~~l~ 379 (461)
T TIGR02931 309 FLADKRVAIYG-------NPDLVIGLAEFCLDLEMKPVLLLLGDDNSGYVD--DPRIKALQENVDYDMEIVTNADFWELE 379 (461)
T ss_pred HhCCCeEEEEe-------CHHHHHHHHHHHHHCCCEEEEEEECCCCcccch--hHHHHHHHhhCCCCceEEeCCCHHHHH
Confidence 57899997765 46789999999999999998765 322211111 1223333332 45566555555554
Q ss_pred -hh----hccCEEEEechhchHHHH
Q 022363 147 -TA----LKADLIVLNTAVAGKWLD 166 (298)
Q Consensus 147 -~A----~~aDLVIaNT~v~g~wl~ 166 (298)
.+ .++|++|.|+- ++++.
T Consensus 380 ~~i~~~~~~~Dliig~s~--~~~~a 402 (461)
T TIGR02931 380 SRIKNQGLELDLILGHSK--GRFIS 402 (461)
T ss_pred HHHHhcCCCCCEEEECcc--hHHHH
Confidence 22 36999999996 45444
No 234
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=45.56 E-value=59 Score=32.89 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=54.9
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhch------hHH
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ------ETI 145 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~------~~i 145 (298)
.+|.+|...-|=---|+ .|+.-|+..|++|.|..++-.+..+++...| .+.||+|+..+++ ..+
T Consensus 34 ~~g~~i~~~~hl~~~ta------~l~~~L~~~GA~v~~~~~np~stqd~vaa~l----~~~gi~v~a~~~~~~~~y~~~~ 103 (413)
T cd00401 34 LKGARIAGCLHMTVQTA------VLIETLVALGAEVRWSSCNIFSTQDHAAAAI----AAAGIPVFAWKGETLEEYWWCI 103 (413)
T ss_pred CCCCEEEEEEcchHHHH------HHHHHHHHcCCEEEEEcCCCccchHHHHHHH----HhcCceEEEEcCCCHHHHHHHH
Confidence 47999999999665553 4788899999999999987777778884444 4669999975432 233
Q ss_pred Hhhh-----ccCEEEEec
Q 022363 146 NTAL-----KADLIVLNT 158 (298)
Q Consensus 146 ~~A~-----~aDLVIaNT 158 (298)
..+. ++|+|+=+-
T Consensus 104 ~~~l~~~~~~p~~i~DdG 121 (413)
T cd00401 104 EQALKFPDGEPNMILDDG 121 (413)
T ss_pred HHHHhccCCCCcEEEecc
Confidence 3222 677777543
No 235
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=45.51 E-value=1.5e+02 Score=25.50 Aligned_cols=78 Identities=23% Similarity=0.357 Sum_probs=43.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--ee-h-hchhHHH-
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--IS-A-KGQETIN- 146 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v--~~-~-k~~~~i~- 146 (298)
|++|+||+.+ .+|+ +=.++++.|.+.|++|.++..+... . ..+.+++...+.++ +. | ...+++.
T Consensus 2 ~~~~~vlItG----~sg~--iG~~la~~l~~~g~~v~~~~r~~~~-~----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 70 (258)
T PRK12429 2 LKGKVALVTG----AASG--IGLEIALALAKEGAKVVIADLNDEA-A----AAAAEALQKAGGKAIGVAMDVTDEEAINA 70 (258)
T ss_pred CCCCEEEEEC----CCch--HHHHHHHHHHHCCCeEEEEeCCHHH-H----HHHHHHHHhcCCcEEEEEcCCCCHHHHHH
Confidence 4667777653 2232 5579999999999999887643221 1 12334444444332 21 1 1222222
Q ss_pred -------hhhccCEEEEechh
Q 022363 147 -------TALKADLIVLNTAV 160 (298)
Q Consensus 147 -------~A~~aDLVIaNT~v 160 (298)
....+|.||.|+..
T Consensus 71 ~~~~~~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 71 GIDYAVETFGGVDILVNNAGI 91 (258)
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 12368999998864
No 236
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=45.32 E-value=87 Score=30.46 Aligned_cols=59 Identities=22% Similarity=0.473 Sum_probs=42.7
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC---CCchhhhhhhHHHHHHcCCceeeh
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP---SEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G---~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
+|+|++| |+-..-+|+|..|++.|.+|.++..... ....++...+.+.+.++||.+...
T Consensus 170 ~~~vvVi-------GgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~ 231 (461)
T TIGR01350 170 PESLVII-------GGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTN 231 (461)
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 5677777 3445678999999999999998874321 133556666788888889988755
No 237
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=45.30 E-value=1.2e+02 Score=29.57 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=42.4
Q ss_pred HHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHH--HcCCceeehhchhHHHhhhccCEEEEechhc--hHHHHHHhh
Q 022363 95 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMW--DRGVQVISAKGQETINTALKADLIVLNTAVA--GKWLDAVLK 170 (298)
Q Consensus 95 eLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll--~rgI~v~~~k~~~~i~~A~~aDLVIaNT~v~--g~wl~~l~~ 170 (298)
.+|++|++.|++|...=.+.. ... ... .+++ ..|+.+....... ...++|+||....+. .+.+.+..+
T Consensus 13 a~a~~l~~~G~~V~~sD~~~~---~~~-~~~-~~~~~~~~gi~~~~g~~~~---~~~~~d~vv~sp~i~~~~p~~~~a~~ 84 (433)
T TIGR01087 13 AVARFLHKKGAEVTVTDLKPN---EEL-EPS-MGQLRLNEGSVLHTGLHLE---DLNNADLVVKSPGIPPDHPLVQAAAK 84 (433)
T ss_pred HHHHHHHHCCCEEEEEeCCCC---ccc-hhH-HHHHhhccCcEEEecCchH---HhccCCEEEECCCCCCCCHHHHHHHH
Confidence 889999999999875332221 111 010 1233 3599887652222 236799999999985 455655544
Q ss_pred ccC
Q 022363 171 EDV 173 (298)
Q Consensus 171 ~~~ 173 (298)
.+.
T Consensus 85 ~~i 87 (433)
T TIGR01087 85 RGI 87 (433)
T ss_pred CCC
Confidence 444
No 238
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=44.87 E-value=88 Score=25.79 Aligned_cols=100 Identities=15% Similarity=0.033 Sum_probs=47.8
Q ss_pred cEEEEEe-ccCCCCCchHHHHHHHHHHHhCCCeEEEEe-ccCCCC-chhhhhhhHHHHHHcCCceeehhchhHHH--hhh
Q 022363 75 KLVLLVS-HELSLSGGPLLLMELAFLLRGVGTKVNWIT-IQKPSE-EDEVIYSLEHKMWDRGVQVISAKGQETIN--TAL 149 (298)
Q Consensus 75 KkILLIS-HELS~TGAPLlLleLA~~Lkq~G~~V~vL~-~~~G~~-~g~v~~~L~~kll~rgI~v~~~k~~~~i~--~A~ 149 (298)
++||||+ |+..|+ |+.= .+++.+-.. ..+.+-+ |-.+.. ++.+.+....-+.+.|+..-..+ -+++. .+.
T Consensus 1 ~~iLfvc~~N~~RS--~mAE-ai~~~~~~~-~~~~v~SaG~~~~~~g~~~~~~a~~~l~~~Gid~s~h~-s~~l~~~~~~ 75 (141)
T cd00115 1 KKVLFVCTGNICRS--PMAE-AIFRHLAPK-LDIEVDSAGTSGWHVGGRPDPRAIAVLAEHGIDISGHR-ARQLTEDDFD 75 (141)
T ss_pred CeEEEEecChhhhh--HHHH-HHHHHHhhh-CCEEEECCCCCCccCCCCCCHHHHHHHHHcCCCcccCe-eeeCCHHHHH
Confidence 4788888 565555 2211 112222111 1344333 211111 23444445566666799873321 12222 467
Q ss_pred ccCEEEEechhchHHHHHHhhccCCCCCCceEEE
Q 022363 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWW 183 (298)
Q Consensus 150 ~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWW 183 (298)
++|+||+=|-.....+. ..+|...+++..|
T Consensus 76 ~aDlIi~m~~~~~~~~~----~~~~~~~~~v~~~ 105 (141)
T cd00115 76 EFDLIITMDESNLAELL----EPPPGGRAKVELL 105 (141)
T ss_pred hCCEEEEECHHHHHHHH----hcCCCCcceEEeH
Confidence 99999987665444432 2223334466666
No 239
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=44.78 E-value=41 Score=25.70 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=31.2
Q ss_pred HHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc
Q 022363 94 MELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG 141 (298)
Q Consensus 94 leLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~ 141 (298)
..++..|.+.|.++++..+-++ +..++|.++||+++....
T Consensus 53 ~~~~~~l~~~~v~~vi~~~iG~--------~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 53 GKAAEFLADEGVDVVIVGGIGP--------RALNKLRNAGIKVYKGAE 92 (103)
T ss_pred hHHHHHHHHcCCCEEEeCCCCc--------CHHHHHHHCCCEEEEcCC
Confidence 4577778888999988876554 457899999999997654
No 240
>PRK09186 flagellin modification protein A; Provisional
Probab=44.64 E-value=92 Score=26.97 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=25.5
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (298)
|++||++|+.. -+| -+=.++|+.|.+.|++|.++..
T Consensus 1 ~~~~k~vlItG----as~--giG~~~a~~l~~~g~~v~~~~r 36 (256)
T PRK09186 1 MLKGKTILITG----AGG--LIGSALVKAILEAGGIVIAADI 36 (256)
T ss_pred CCCCCEEEEEC----CCc--hHHHHHHHHHHHCCCEEEEEec
Confidence 56788777653 222 3667889999999999877753
No 241
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=44.60 E-value=1.1e+02 Score=26.33 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=43.3
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCC--cee--ehhchhHH--
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV--QVI--SAKGQETI-- 145 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI--~v~--~~k~~~~i-- 145 (298)
|.+|++|+..- +|+ +=.++++.|.+.|++|.++..+..+. ...+.+++...+- ..+ +....+.+
T Consensus 2 ~~~~~vlItGa----~g~--iG~~~a~~l~~~g~~v~~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 71 (250)
T PRK08063 2 FSGKVALVTGS----SRG--IGKAIALRLAEEGYDIAVNYARSRKA----AEETAEEIEALGRKALAVKANVGDVEKIKE 71 (250)
T ss_pred CCCCEEEEeCC----Cch--HHHHHHHHHHHCCCEEEEEcCCCHHH----HHHHHHHHHhcCCeEEEEEcCCCCHHHHHH
Confidence 45676666532 233 55689999999999988765444321 1123444444332 222 11222222
Q ss_pred --Hh----hhccCEEEEechh
Q 022363 146 --NT----ALKADLIVLNTAV 160 (298)
Q Consensus 146 --~~----A~~aDLVIaNT~v 160 (298)
+. ...+|.||.|...
T Consensus 72 ~~~~~~~~~~~id~vi~~ag~ 92 (250)
T PRK08063 72 MFAQIDEEFGRLDVFVNNAAS 92 (250)
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 21 2368999999864
No 242
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.59 E-value=1.7e+02 Score=25.64 Aligned_cols=75 Identities=17% Similarity=0.228 Sum_probs=43.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceee-h-hchhHHH---
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS-A-KGQETIN--- 146 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~-~-k~~~~i~--- 146 (298)
++||++|++.= .+. +=.++|+.|.+.|++|.++..+.. ...+++.+.++..+. | ...+++.
T Consensus 5 l~~k~~lItGa-s~g-----IG~~~a~~l~~~G~~v~~~~~~~~--------~~~~~l~~~~~~~~~~Dl~~~~~~~~~~ 70 (255)
T PRK06463 5 FKGKVALITGG-TRG-----IGRAIAEAFLREGAKVAVLYNSAE--------NEAKELREKGVFTIKCDVGNRDQVKKSK 70 (255)
T ss_pred cCCCEEEEeCC-CCh-----HHHHHHHHHHHCCCEEEEEeCCcH--------HHHHHHHhCCCeEEEecCCCHHHHHHHH
Confidence 46777666542 222 446789999999999887653321 123444444554442 1 2222222
Q ss_pred -----hhhccCEEEEechh
Q 022363 147 -----TALKADLIVLNTAV 160 (298)
Q Consensus 147 -----~A~~aDLVIaNT~v 160 (298)
...+.|.||.|..+
T Consensus 71 ~~~~~~~~~id~li~~ag~ 89 (255)
T PRK06463 71 EVVEKEFGRVDVLVNNAGI 89 (255)
T ss_pred HHHHHHcCCCCEEEECCCc
Confidence 12478999998765
No 243
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=44.34 E-value=1.3e+02 Score=29.67 Aligned_cols=83 Identities=12% Similarity=0.055 Sum_probs=49.7
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhcc
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~a 151 (298)
.+|++|.+|++-.+ +..-.+++++. ..|.++.+.+-++=...++++...++...+.|..+..... .-+...++
T Consensus 154 l~g~~ia~vGD~~~--~v~~Sl~~~~~---~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d--~~ea~~~a 226 (336)
T PRK03515 154 FNEMTLAYAGDARN--NMGNSLLEAAA---LTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTED--IAEGVKGA 226 (336)
T ss_pred cCCCEEEEeCCCcC--cHHHHHHHHHH---HcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcC--HHHHhCCC
Confidence 67899999996324 34445555544 4599999988433222344444444555556755432211 12356799
Q ss_pred CEEEEechhc
Q 022363 152 DLIVLNTAVA 161 (298)
Q Consensus 152 DLVIaNT~v~ 161 (298)
|.|++.+-.+
T Consensus 227 Dvvytd~W~s 236 (336)
T PRK03515 227 DFIYTDVWVS 236 (336)
T ss_pred CEEEecCccc
Confidence 9999987654
No 244
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=44.31 E-value=1.3e+02 Score=25.37 Aligned_cols=78 Identities=18% Similarity=0.240 Sum_probs=42.1
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee----ehhchhHHH-
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI----SAKGQETIN- 146 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~----~~k~~~~i~- 146 (298)
|++|+||+++. +|. +=.++++.|.+.|++|.++. +.... . ..+.+++...+.++. +-...+++.
T Consensus 3 ~~~~~ilItGa----sg~--iG~~l~~~l~~~g~~v~~~~-r~~~~---~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 71 (246)
T PRK05653 3 LQGKTALVTGA----SRG--IGRAIALRLAADGAKVVIYD-SNEEA---A-EALAAELRAAGGEARVLVFDVSDEAAVRA 71 (246)
T ss_pred CCCCEEEEECC----CcH--HHHHHHHHHHHCCCEEEEEe-CChhH---H-HHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence 45678888764 222 44678888889999975554 43321 1 123444444443322 111222222
Q ss_pred -------hhhccCEEEEechh
Q 022363 147 -------TALKADLIVLNTAV 160 (298)
Q Consensus 147 -------~A~~aDLVIaNT~v 160 (298)
....+|.||.|...
T Consensus 72 ~~~~~~~~~~~id~vi~~ag~ 92 (246)
T PRK05653 72 LIEAAVEAFGALDILVNNAGI 92 (246)
T ss_pred HHHHHHHHhCCCCEEEECCCc
Confidence 23467999998754
No 245
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=44.29 E-value=1.2e+02 Score=31.01 Aligned_cols=109 Identities=14% Similarity=0.218 Sum_probs=65.5
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc--------hhHHH
Q 022363 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--------QETIN 146 (298)
Q Consensus 75 KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~--------~~~i~ 146 (298)
+.|+|++ +..+|=.-....||.+|++.|..|.++.+..- ..--+.-|...-.+.++|++.... .+.+.
T Consensus 101 ~vi~lvG--~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~--R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~ 176 (429)
T TIGR01425 101 NVIMFVG--LQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF--RAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVE 176 (429)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc--chhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHH
Confidence 3466666 88999999999999999999999999984321 111111222233344888874321 12333
Q ss_pred hh--hccCEEEEechhch----HHHHHHhhccCCCCCCceEEEeeecc
Q 022363 147 TA--LKADLIVLNTAVAG----KWLDAVLKEDVPRVLPNVLWWIHEMR 188 (298)
Q Consensus 147 ~A--~~aDLVIaNT~v~g----~wl~~l~~~~~p~~~~pVIWWIHE~r 188 (298)
.+ .++|+||+.|+--. .++.++.+.. ....|--+..+.++-
T Consensus 177 ~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~-~~~~p~e~lLVlda~ 223 (429)
T TIGR01425 177 KFKKENFDIIIVDTSGRHKQEDSLFEEMLQVA-EAIQPDNIIFVMDGS 223 (429)
T ss_pred HHHhCCCCEEEEECCCCCcchHHHHHHHHHHh-hhcCCcEEEEEeccc
Confidence 23 47999999999654 3444443221 122334466676653
No 246
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=44.13 E-value=70 Score=32.35 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=54.5
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh------chhHH
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------GQETI 145 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k------~~~~i 145 (298)
.+|.+|...-|=---|. .|+.-|+..|++|.|..++-.+..+++. .-+.+.||+|+-.+ +...+
T Consensus 30 l~G~~i~~~~hl~~~Ta------~l~~~L~~~GA~v~~~~~np~stqd~va----aaL~~~gi~v~a~~~~~~~ey~~~~ 99 (406)
T TIGR00936 30 LKGARIAACLHVTVETA------VLIETLVAGGAEVAWTSCNPLSTQDDVA----AALAKAGIPVFAWRGETNEEYYWAI 99 (406)
T ss_pred CCCCEEEEEEechHHHH------HHHHHHHHcCCEEEEEccCCccccHHHH----HHHHhCCceEEEecCCCHHHHHHHH
Confidence 57999999999665554 5778899999999999877667778884 44456799999433 33333
Q ss_pred Hh--hhccCEEEEec
Q 022363 146 NT--ALKADLIVLNT 158 (298)
Q Consensus 146 ~~--A~~aDLVIaNT 158 (298)
.. ..++|+|+=+-
T Consensus 100 ~~~l~~~p~~iiDdG 114 (406)
T TIGR00936 100 EQVLDHEPNIIIDDG 114 (406)
T ss_pred HHHhcCCCCEEEecc
Confidence 32 23677776554
No 247
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=44.10 E-value=23 Score=28.72 Aligned_cols=29 Identities=21% Similarity=0.431 Sum_probs=23.4
Q ss_pred hhHHHHHHcCCceeehhchhHHHhhhccCEEEEechh
Q 022363 124 SLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAV 160 (298)
Q Consensus 124 ~L~~kll~rgI~v~~~k~~~~i~~A~~aDLVIaNT~v 160 (298)
-+...|.+.|..+..+ ..++|+||.||=.
T Consensus 18 ~i~~~l~~~G~~~~~~--------~e~AD~iiiNTC~ 46 (98)
T PF00919_consen 18 RIASILQAAGYEIVDD--------PEEADVIIINTCT 46 (98)
T ss_pred HHHHHHHhcCCeeecc--------cccCCEEEEEcCC
Confidence 4677888888888877 4799999999954
No 248
>PRK13748 putative mercuric reductase; Provisional
Probab=44.08 E-value=87 Score=31.45 Aligned_cols=59 Identities=17% Similarity=0.322 Sum_probs=43.4
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccC--CCCchhhhhhhHHHHHHcCCceeeh
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK--PSEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~--G~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
+|++++| |+-..-+|+|..|.+.|.+|.++.... +..+.++...+++.+.++||.+...
T Consensus 270 ~~~vvVi-------GgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~~~ 330 (561)
T PRK13748 270 PERLAVI-------GSSVVALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEH 330 (561)
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHHcCCEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEcC
Confidence 4667666 444578999999999999999997421 1123456667788888899998854
No 249
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=43.88 E-value=81 Score=33.82 Aligned_cols=84 Identities=15% Similarity=0.197 Sum_probs=51.7
Q ss_pred ccccEEEEEeccCCCCCchHHHHH-HHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhc
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLME-LAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLle-LA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~ 150 (298)
|+-|+|++|. ++.+| |. ||++|++.|++|.+.=.+.. +..+++.+.|+++...... ....+
T Consensus 2 ~~~~~i~viG--~G~sG-----~salA~~L~~~G~~V~~sD~~~~--------~~~~~L~~~gi~~~~g~~~---~~~~~ 63 (809)
T PRK14573 2 MKSLFYHFIG--IGGIG-----MSALAHILLDRGYSVSGSDLSEG--------KTVEKLKAKGARFFLGHQE---EHVPE 63 (809)
T ss_pred CCcceEEEEE--ecHHh-----HHHHHHHHHHCCCeEEEECCCCC--------hHHHHHHHCCCEEeCCCCH---HHcCC
Confidence 3445677765 34444 44 49999999999875322111 1235677789998754322 22457
Q ss_pred cCEEEEechhc--hHHHHHHhhccC
Q 022363 151 ADLIVLNTAVA--GKWLDAVLKEDV 173 (298)
Q Consensus 151 aDLVIaNT~v~--g~wl~~l~~~~~ 173 (298)
+|+||.+..+. .+.+.+..+.+.
T Consensus 64 ~d~vV~SpgI~~~~p~~~~a~~~gi 88 (809)
T PRK14573 64 DAVVVYSSSISKDNVEYLSAKSRGN 88 (809)
T ss_pred CCEEEECCCcCCCCHHHHHHHHCCC
Confidence 99999999875 345555543444
No 250
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=43.74 E-value=81 Score=31.09 Aligned_cols=79 Identities=20% Similarity=0.266 Sum_probs=46.8
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHH-hCCCeEEEEeccCCCCchhhhhhhHHHHHHcC-Cce-eehhchhHHH
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLR-GVGTKVNWITIQKPSEEDEVIYSLEHKMWDRG-VQV-ISAKGQETIN 146 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~Lk-q~G~~V~vL~~~~G~~~g~v~~~L~~kll~rg-I~v-~~~k~~~~i~ 146 (298)
.+..||+|.+.+ |+ -....+++.|. +.|.+|+.+...-+. .+ .+++.+.+.. .++ +.+.....+.
T Consensus 284 ~~l~Gk~vai~~------~~-~~~~~la~~l~~elG~~v~~i~~~~~~-~~----~~~~~~~~~~~~~~~v~d~~~~e~~ 351 (415)
T cd01977 284 ERLKGKKVCIWT------GG-PKLWHWTKVIEDELGMQVVAMSSKFGH-QE----DFEKVIARGGEGTIYIDDPNELEFF 351 (415)
T ss_pred HHcCCCEEEEEC------CC-chHHHHHHHHHHhcCCEEEEEEEEecc-HH----HHHHHHHhcCCceEEEeCCCHHHHH
Confidence 567899998742 22 34688998885 899999887643211 11 1233343332 233 3333333322
Q ss_pred ---hhhccCEEEEechh
Q 022363 147 ---TALKADLIVLNTAV 160 (298)
Q Consensus 147 ---~A~~aDLVIaNT~v 160 (298)
...++|+||.|+-.
T Consensus 352 ~~~~~~~pdliig~s~~ 368 (415)
T cd01977 352 EILEMLKPDIILTGPRV 368 (415)
T ss_pred HHHHhcCCCEEEecCcc
Confidence 35589999999974
No 251
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=43.73 E-value=84 Score=28.03 Aligned_cols=59 Identities=22% Similarity=0.340 Sum_probs=37.4
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe--ccCCCCchhhhhhhHHHH-HHcCCceee
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT--IQKPSEEDEVIYSLEHKM-WDRGVQVIS 138 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~--~~~G~~~g~v~~~L~~kl-l~rgI~v~~ 138 (298)
..+|++||+|= |.=.||+ -+.+.++.|++.|.+++-+. ...+..++ .+++ .+.|+|+..
T Consensus 111 ~~~G~rVlIVD-DvitTG~--T~~~ai~ll~~aGa~vv~v~~vvd~~~~~g------~~~l~~~~gv~v~s 172 (187)
T PRK12560 111 IEKGDRVAIID-DTLSTGG--TVIALIKAIENSGGIVSDVICVIEKTQNNG------RKKLFTQTGINVKS 172 (187)
T ss_pred CCCcCEEEEEE-eccccCH--HHHHHHHHHHHCCCEEEEEEEEEEecccch------HHHHhhccCCcEEE
Confidence 56899999885 5556666 45888999999999853322 22221111 2344 456888764
No 252
>PRK14727 putative mercuric reductase; Provisional
Probab=43.68 E-value=90 Score=31.07 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=42.6
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccC--CCCchhhhhhhHHHHHHcCCceeeh
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK--PSEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~--G~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
.|++++| |+-..-+|+|..|.+.|.+|.++.... +..+.++...+++.+.++|+++...
T Consensus 188 ~k~vvVI-------GgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~~~ 248 (479)
T PRK14727 188 PASLTVI-------GSSVVAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTACFEKEGIEVLNN 248 (479)
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHHcCCEEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEEcC
Confidence 3667777 444578999999999999999997431 1123455566778888889998754
No 253
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=43.51 E-value=1.1e+02 Score=30.84 Aligned_cols=79 Identities=22% Similarity=0.345 Sum_probs=52.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhh----HHHHHHcCCceeehhchhHHHh
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSL----EHKMWDRGVQVISAKGQETINT 147 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L----~~kll~rgI~v~~~k~~~~i~~ 147 (298)
++||+||+| .|.=.||+ -|-++++.|++.|...+-+..--|+--.+-.|++ .+++.... +..+++..
T Consensus 336 ~~gk~v~lv-DD~ittG~--T~~~~~~~l~~~ga~~v~~~~~spp~~~pc~yg~d~~~~~el~~~~------~~~~~i~~ 406 (442)
T TIGR01134 336 FRGKRVVLV-DDSIVRGT--TSRQIVKMLRDAGAKEVHVRIASPPIRYPCYYGIDMPTREELIANG------RTVEEIAK 406 (442)
T ss_pred CCCCEEEEE-eccccccH--HHHHHHHHHHHcCCcEEEEEEccCCccCCcccccCCCCHHHHhhcC------CCHHHHHH
Confidence 489999887 66777899 5679999999999875555544344222222233 33443322 44666777
Q ss_pred hhccCEEEEech
Q 022363 148 ALKADLIVLNTA 159 (298)
Q Consensus 148 A~~aDLVIaNT~ 159 (298)
..++|-+-..|+
T Consensus 407 ~~~~~~l~~~~~ 418 (442)
T TIGR01134 407 EIGADSLAYLSL 418 (442)
T ss_pred HhCCCEEEEecH
Confidence 778998888887
No 254
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=43.47 E-value=69 Score=30.32 Aligned_cols=41 Identities=27% Similarity=0.466 Sum_probs=30.2
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (298)
++||+||+| .|.=.||+ -+.+.++.|++.|...+.+..-+|
T Consensus 202 v~Gk~VlIV-DDIi~TG~--Tl~~aa~~Lk~~GA~~V~~~~~H~ 242 (285)
T PRK00934 202 VKGKDVLIV-DDIISTGG--TMATAIKILKEQGAKKVYVACVHP 242 (285)
T ss_pred cCCCEEEEE-cCccccHH--HHHHHHHHHHHCCCCEEEEEEEee
Confidence 689987766 67777888 577999999999986544443333
No 255
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=43.17 E-value=1.7e+02 Score=26.40 Aligned_cols=70 Identities=19% Similarity=0.259 Sum_probs=41.0
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhCC--CeEEEEeccCCCCchhhhhhhHHHHHHcCCceee--hhc-------hh
Q 022363 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS--AKG-------QE 143 (298)
Q Consensus 75 KkILLISHELS~TGAPLlLleLA~~Lkq~G--~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~--~k~-------~~ 143 (298)
|-++|+|++ |. .+-.+...+.+.+ +++.++...+++. +..+...+.|||++. ... ..
T Consensus 3 ki~vl~sg~----gs--~~~~ll~~~~~~~~~~~I~~vvs~~~~~------~~~~~a~~~gIp~~~~~~~~~~~~~~~~~ 70 (200)
T PRK05647 3 RIVVLASGN----GS--NLQAIIDACAAGQLPAEIVAVISDRPDA------YGLERAEAAGIPTFVLDHKDFPSREAFDA 70 (200)
T ss_pred eEEEEEcCC----Ch--hHHHHHHHHHcCCCCcEEEEEEecCccc------hHHHHHHHcCCCEEEECccccCchhHhHH
Confidence 456777766 33 4456667777654 6666655443321 345667777999975 211 12
Q ss_pred HH-H--hhhccCEEEE
Q 022363 144 TI-N--TALKADLIVL 156 (298)
Q Consensus 144 ~i-~--~A~~aDLVIa 156 (298)
.+ + ...++|++|+
T Consensus 71 ~~~~~l~~~~~D~iv~ 86 (200)
T PRK05647 71 ALVEALDAYQPDLVVL 86 (200)
T ss_pred HHHHHHHHhCcCEEEh
Confidence 22 2 2458999986
No 256
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=43.12 E-value=1.2e+02 Score=29.69 Aligned_cols=71 Identities=11% Similarity=0.078 Sum_probs=43.0
Q ss_pred HHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHH--cCCceeehhchhHHHhhhccCEEEEechhc--hHHHHHHh
Q 022363 94 MELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD--RGVQVISAKGQETINTALKADLIVLNTAVA--GKWLDAVL 169 (298)
Q Consensus 94 leLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~--rgI~v~~~k~~~~i~~A~~aDLVIaNT~v~--g~wl~~l~ 169 (298)
|.+|++|++.|++|...=.+.. . ...+++.+ .|+++....+.. ....++|+||....+. .+.+.+..
T Consensus 19 ~s~a~~L~~~G~~v~~~D~~~~---~----~~~~~l~~~~~g~~~~~~~~~~--~~~~~~d~vV~sp~i~~~~p~~~~a~ 89 (448)
T PRK03803 19 LSVVRFLARQGIPFAVMDSREQ---P----PGLDTLAREFPDVELRCGGFDC--ELLVQASEIIISPGLALDTPALRAAA 89 (448)
T ss_pred HHHHHHHHhCCCeEEEEeCCCC---c----hhHHHHHhhcCCcEEEeCCCCh--HHhcCCCEEEECCCCCCCCHHHHHHH
Confidence 4599999999998765332211 1 22345555 388887542222 1235799999999885 45566554
Q ss_pred hccC
Q 022363 170 KEDV 173 (298)
Q Consensus 170 ~~~~ 173 (298)
+...
T Consensus 90 ~~~i 93 (448)
T PRK03803 90 AMGI 93 (448)
T ss_pred HCCC
Confidence 3333
No 257
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=43.05 E-value=51 Score=34.16 Aligned_cols=59 Identities=25% Similarity=0.368 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhccCEEEEechhc
Q 022363 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVA 161 (298)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~aDLVIaNT~v~ 161 (298)
-|--||..|++.|++|+ |+ |--.++..++++++|++++.--..+ ...+.|.||.-|++.
T Consensus 19 GMsglA~iL~~~G~~Vs------GS--D~~~~~~t~~L~~~G~~i~~gh~~~---ni~~~~~VV~s~Ai~ 77 (459)
T COG0773 19 GMSGLAEILLNLGYKVS------GS--DLAESPMTQRLEALGIEIFIGHDAE---NILDADVVVVSNAIK 77 (459)
T ss_pred cHHHHHHHHHhCCCceE------Cc--cccccHHHHHHHHCCCeEeCCCCHH---HcCCCceEEEecccC
Confidence 57789999999999996 42 2223467899999999999775444 345667788777765
No 258
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=43.01 E-value=58 Score=27.11 Aligned_cols=77 Identities=16% Similarity=0.131 Sum_probs=37.1
Q ss_pred cHHHHHHHHHhcccccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecc-cChhhHHHH
Q 022363 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS-MNFLLIRSC 287 (298)
Q Consensus 210 S~AtA~yw~~r~~~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~s-v~~~~~~~~ 287 (298)
|++.|..+-.+....-.+.=|....+.|.++- ++..+.+.......-+.+...+.+.++|+||++=+| -||-.|+-+
T Consensus 46 S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gDvli~iS~SG~s~~vi~a~ 123 (138)
T PF13580_consen 46 SAAIASHFAADLGGLFGVNRILLPAIALNDDA-LTAISNDLEYDEGFARQLLALYDIRPGDVLIVISNSGNSPNVIEAA 123 (138)
T ss_dssp HHHHHHHHHHHHHCHSSSTSSS-SEEETTSTH-HHHHHHHTTGGGTHHHHHHHHTT--TT-EEEEEESSS-SHHHHHHH
T ss_pred hhhHHHHHHHHHhcCcCCCcccccccccccch-HhhhhcccchhhHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHH
Confidence 55566655555552222221222345666665 444443322222233445666778999999987765 555555443
No 259
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=42.95 E-value=1.8e+02 Score=28.89 Aligned_cols=82 Identities=17% Similarity=0.142 Sum_probs=52.8
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC------------CchhhhhhhHHHHHHcCCceeeh
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS------------EEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~------------~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
.++|+|++|. |+| .=++.|..|.+.|++|.++-..... ...++.....+.+.+.|+.+...
T Consensus 131 ~~~~~V~IIG------~G~-aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~ 203 (449)
T TIGR01316 131 STHKKVAVIG------AGP-AGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMN 203 (449)
T ss_pred CCCCEEEEEC------cCH-HHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeC
Confidence 4689999996 444 4458899999999999988743211 12233334445677778888765
Q ss_pred hch-h--HHH-hhhccCEEEEechh
Q 022363 140 KGQ-E--TIN-TALKADLIVLNTAV 160 (298)
Q Consensus 140 k~~-~--~i~-~A~~aDLVIaNT~v 160 (298)
... + .+. ....+|.||+-|-+
T Consensus 204 ~~v~~~v~~~~~~~~yd~viiAtGa 228 (449)
T TIGR01316 204 FLVGKTATLEELFSQYDAVFIGTGA 228 (449)
T ss_pred CccCCcCCHHHHHhhCCEEEEeCCC
Confidence 211 1 111 22469999999986
No 260
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=42.82 E-value=92 Score=28.45 Aligned_cols=59 Identities=19% Similarity=0.296 Sum_probs=40.2
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe--ccCCCCchhhhhhhHHHHHHcCCceeeh
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT--IQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~--~~~G~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
+-+|++|++| .|.=.||+ -+.+.++.|++.|.+|+-+. ..++. +-.+++.+.|+++..-
T Consensus 115 ~~~g~~VlIV-DDViTTG~--Ti~~a~~~L~~~G~~vv~v~vlvdr~~-------~~~~~l~~~gi~v~sl 175 (206)
T PRK13809 115 FTPGQTCLVI-NDMVSSGK--SIIETAVALEEEGLVVREALVFLDRQK-------GACQPLGPQGIKLSSV 175 (206)
T ss_pred cCCCCEEEEE-EeccccCH--HHHHHHHHHHHCCCEEEEEEEEEECcc-------cHHHHHHhcCCCEEEE
Confidence 4588888777 56667787 67899999999998854333 22221 1145666778888754
No 261
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=42.18 E-value=45 Score=30.56 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=30.9
Q ss_pred ccccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC
Q 022363 68 PLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (298)
Q Consensus 68 ~~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~ 116 (298)
-.+=++||..++| .|+=-||. -+...|+.||+.|+.=+....-+|-
T Consensus 77 vVGDV~gk~~IIv-DDiIdtg~--Tl~~aA~~Lk~~GA~~V~~~aTHgv 122 (184)
T PF14572_consen 77 VVGDVKGKICIIV-DDIIDTGG--TLIKAAELLKERGAKKVYACATHGV 122 (184)
T ss_dssp EES--TTSEEEEE-EEEESSTH--HHHHHHHHHHHTTESEEEEEEEEE-
T ss_pred EEEEccCCeEeee-cccccchH--HHHHHHHHHHHcCCCEEEEEEeCcc
Confidence 3467899966655 56666666 5789999999999985555545553
No 262
>PRK14098 glycogen synthase; Provisional
Probab=42.09 E-value=90 Score=31.50 Aligned_cols=37 Identities=22% Similarity=0.125 Sum_probs=30.0
Q ss_pred cEEEEEeccCC---CC-CchHHHHHHHHHHHhCCCeEEEEe
Q 022363 75 KLVLLVSHELS---LS-GGPLLLMELAFLLRGVGTKVNWIT 111 (298)
Q Consensus 75 KkILLISHELS---~T-GAPLlLleLA~~Lkq~G~~V~vL~ 111 (298)
.+||+||=|.. -| |===++-.|.+.|++.|++|.++.
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~ 46 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMM 46 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEc
Confidence 78999999974 34 444578889999999999998777
No 263
>PRK07478 short chain dehydrogenase; Provisional
Probab=42.06 E-value=1.6e+02 Score=25.63 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=43.9
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee--e-h-hchhH---
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI--S-A-KGQET--- 144 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~--~-~-k~~~~--- 144 (298)
+++|++|+.. -+| =+=.++++.|.+.|++|.++... ++ . ...+.+++.+.|..+. . | ....+
T Consensus 4 ~~~k~~lItG----as~--giG~~ia~~l~~~G~~v~~~~r~-~~---~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 72 (254)
T PRK07478 4 LNGKVAIITG----ASS--GIGRAAAKLFAREGAKVVVGARR-QA---E-LDQLVAEIRAEGGEAVALAGDVRDEAYAKA 72 (254)
T ss_pred CCCCEEEEeC----CCC--hHHHHHHHHHHHCCCEEEEEeCC-HH---H-HHHHHHHHHhcCCcEEEEEcCCCCHHHHHH
Confidence 4677666542 223 25678899999999998777633 21 1 1233455555443322 1 1 11222
Q ss_pred -HH----hhhccCEEEEechhc
Q 022363 145 -IN----TALKADLIVLNTAVA 161 (298)
Q Consensus 145 -i~----~A~~aDLVIaNT~v~ 161 (298)
++ .....|.+|.|....
T Consensus 73 ~~~~~~~~~~~id~li~~ag~~ 94 (254)
T PRK07478 73 LVALAVERFGGLDIAFNNAGTL 94 (254)
T ss_pred HHHHHHHhcCCCCEEEECCCCC
Confidence 22 234789999998764
No 264
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=42.05 E-value=95 Score=30.49 Aligned_cols=77 Identities=21% Similarity=0.264 Sum_probs=47.9
Q ss_pred CchHHHHHHHHHHHhCCCeEEEEeccCCCCc----hhhhhhhHHHHHHcCCceeeh---hchhHHH--hhhccCEEEEec
Q 022363 88 GGPLLLMELAFLLRGVGTKVNWITIQKPSEE----DEVIYSLEHKMWDRGVQVISA---KGQETIN--TALKADLIVLNT 158 (298)
Q Consensus 88 GAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~----g~v~~~L~~kll~rgI~v~~~---k~~~~i~--~A~~aDLVIaNT 158 (298)
|-|=+-..-.+.|.++|++|+.+..+-+... .-..+|.....+++|||++.- +..+.++ .+.++|++|+
T Consensus 8 GTp~fa~~~L~~L~~~~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP~~l~~~e~~~~l~~l~~D~ivv-- 85 (307)
T COG0223 8 GTPEFAVPSLEALIEAGHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQPEKLNDPEFLEELAALDPDLIVV-- 85 (307)
T ss_pred cCchhhHHHHHHHHhCCCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceeccccCCcHHHHHHHhccCCCEEEE--
Confidence 5555555666777778999988885533211 123356788888889999844 3322233 3558899986
Q ss_pred hhchHHHH
Q 022363 159 AVAGKWLD 166 (298)
Q Consensus 159 ~v~g~wl~ 166 (298)
+.-|+.+.
T Consensus 86 vayG~ilp 93 (307)
T COG0223 86 VAYGQILP 93 (307)
T ss_pred EehhhhCC
Confidence 33355444
No 265
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=41.95 E-value=1.1e+02 Score=30.11 Aligned_cols=80 Identities=25% Similarity=0.423 Sum_probs=52.6
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC---CCchhhhhhhHHHHHHcCCceeehhchhHH-----
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP---SEEDEVIYSLEHKMWDRGVQVISAKGQETI----- 145 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G---~~~g~v~~~L~~kll~rgI~v~~~k~~~~i----- 145 (298)
+|++++| |+-..-+|+|..|.+.|.+|.++...+. ..+.++...+.+.+.++|+++........+
T Consensus 166 ~~~vvVI-------GgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~ 238 (446)
T TIGR01424 166 PKSILIL-------GGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDD 238 (446)
T ss_pred CCeEEEE-------CCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC
Confidence 4666666 3334679999999999999999984331 134566667788888889998865211111
Q ss_pred ----H----hhhccCEEEEechh
Q 022363 146 ----N----TALKADLIVLNTAV 160 (298)
Q Consensus 146 ----~----~A~~aDLVIaNT~v 160 (298)
. ....+|.||..|-.
T Consensus 239 ~~~v~~~~g~~i~~D~viva~G~ 261 (446)
T TIGR01424 239 GLKVTLSHGEEIVADVVLFATGR 261 (446)
T ss_pred eEEEEEcCCcEeecCEEEEeeCC
Confidence 1 12367888876653
No 266
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=41.93 E-value=85 Score=25.20 Aligned_cols=54 Identities=19% Similarity=0.158 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh-----c----hhHHH--hhhccCEEEEe
Q 022363 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-----G----QETIN--TALKADLIVLN 157 (298)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k-----~----~~~i~--~A~~aDLVIaN 157 (298)
-++++|+.|.+.|+++.... +..+-|.+.|+++..-. + ....+ ...++|+||..
T Consensus 14 ~~~~~a~~l~~~G~~i~aT~------------gTa~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn~ 78 (116)
T cd01423 14 ELLPTAQKLSKLGYKLYATE------------GTADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINL 78 (116)
T ss_pred hHHHHHHHHHHCCCEEEEcc------------HHHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEEC
Confidence 46799999999999987433 23456666688654320 1 11122 25799999764
No 267
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=41.83 E-value=2.1e+02 Score=30.84 Aligned_cols=169 Identities=11% Similarity=0.049 Sum_probs=92.2
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh---------------
Q 022363 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--------------- 140 (298)
Q Consensus 76 kILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k--------------- 140 (298)
+|.++.=|.|.- +.--+|++.||+..-++.+.. =|| ++|.+.|.+.+-+-
T Consensus 228 kIfI~AGE~SGD---lhgA~Li~aLk~~~P~i~~~G-vGG-----------~~M~aaG~e~l~d~~eLsVmG~~EVL~~l 292 (608)
T PRK01021 228 SCFISAGEHSGD---TLGGNLLKEIKALYPDIHCFG-VGG-----------PQMRAEGFHPLFNMEEFQVSGFWEVLLAL 292 (608)
T ss_pred eEEEEeccccHH---HHHHHHHHHHHhcCCCcEEEE-Ecc-----------HHHHhCcCcccCChHHhhhhhHHHHHHHH
Confidence 577888777643 334477888998766665554 334 36666666665431
Q ss_pred ------chhHHH--hhhccCEEEE------echhchHHHHHHhhccCCCC--CCceEEEeeeccccccccccccc----c
Q 022363 141 ------GQETIN--TALKADLIVL------NTAVAGKWLDAVLKEDVPRV--LPNVLWWIHEMRGHYFKLDYVKH----L 200 (298)
Q Consensus 141 ------~~~~i~--~A~~aDLVIa------NT~v~g~wl~~l~~~~~p~~--~~pVIWWIHE~r~~Yf~l~~vkh----L 200 (298)
..+..+ ...+.|+||. |-=+ ++.+++.. .+.|-+ .+|-||==.+-|-.-. .++++| +
T Consensus 293 ~~l~~~~~~l~~~i~~~kPD~vIlID~PgFNlrL-AK~lkk~G-i~ipviyYVsPqVWAWR~~Rikki-~k~vD~ll~If 369 (608)
T PRK01021 293 FKLWYRYRKLYKTILKTNPRTVICIDFPDFHFLL-IKKLRKRG-YKGKIVHYVCPSIWAWRPKRKTIL-EKYLDLLLLIL 369 (608)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCCCCCCHHH-HHHHHhcC-CCCCEEEEECccceeeCcchHHHH-HHHhhhheecC
Confidence 111111 2459999999 7664 45555441 112322 4566665566552111 244555 4
Q ss_pred ccccccccccHHHHHHHHHhcccccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecccC
Q 022363 201 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSMN 280 (298)
Q Consensus 201 p~v~~~~~~S~AtA~yw~~r~~~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~sv~ 280 (298)
|+- .++|++ + +++ ++.+-++-+.+++ ....++..|+++|+++|+-++|.+-.=-
T Consensus 370 PFE----------~~~y~~-~----gv~------v~yVGHPL~d~i~-----~~~~~~~~r~~lgl~~~~~iIaLLPGSR 423 (608)
T PRK01021 370 PFE----------QNLFKD-S----PLR------TVYLGHPLVETIS-----SFSPNLSWKEQLHLPSDKPIVAAFPGSR 423 (608)
T ss_pred ccC----------HHHHHh-c----CCC------eEEECCcHHhhcc-----cCCCHHHHHHHcCCCCCCCEEEEECCCC
Confidence 444 566653 2 332 3444454444322 1124455678888887777887765444
Q ss_pred hhhHHHHH
Q 022363 281 FLLIRSCV 288 (298)
Q Consensus 281 ~~~~~~~~ 288 (298)
++.|+.-.
T Consensus 424 ~~EI~rll 431 (608)
T PRK01021 424 RGDILRNL 431 (608)
T ss_pred HHHHHHHH
Confidence 44554433
No 268
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=41.69 E-value=1.6e+02 Score=28.80 Aligned_cols=82 Identities=12% Similarity=0.067 Sum_probs=46.8
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhcc
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~a 151 (298)
.+|++|.+|++-.++ +.-.++..+...|.++.+.+-++-...+++..-.++...+.|..+..... .-+...++
T Consensus 153 l~g~kia~vGD~~~~-----v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d--~~ea~~~a 225 (332)
T PRK04284 153 YKDIKFTYVGDGRNN-----VANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDD--IDEGVKGS 225 (332)
T ss_pred cCCcEEEEecCCCcc-----hHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcC--HHHHhCCC
Confidence 689999999853332 34455555566699999988432222233432222333345754432111 11356799
Q ss_pred CEEEEechh
Q 022363 152 DLIVLNTAV 160 (298)
Q Consensus 152 DLVIaNT~v 160 (298)
|.|++.+..
T Consensus 226 Dvvy~~~w~ 234 (332)
T PRK04284 226 DVIYTDVWV 234 (332)
T ss_pred CEEEECCcc
Confidence 999997654
No 269
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=41.53 E-value=89 Score=27.59 Aligned_cols=80 Identities=19% Similarity=0.252 Sum_probs=47.1
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEEeccCCC-CchhhhhhhHHHHHHc-CCceeehhchhHHH-----hhhccCEEEEech
Q 022363 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPS-EEDEVIYSLEHKMWDR-GVQVISAKGQETIN-----TALKADLIVLNTA 159 (298)
Q Consensus 87 TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~-~~g~v~~~L~~kll~r-gI~v~~~k~~~~i~-----~A~~aDLVIaNT~ 159 (298)
.+-|+ ++|+.+++.|++-.-+....+. .+......+..++.+. ++|+.-.-+.++.. ....+|.|+++|.
T Consensus 28 ~~dp~---~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~ 104 (234)
T cd04732 28 SDDPV---EVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTA 104 (234)
T ss_pred CCCHH---HHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECch
Confidence 45554 6788898999886665522222 1123334556666554 67877653333322 2356999999998
Q ss_pred hchH--HHHHHh
Q 022363 160 VAGK--WLDAVL 169 (298)
Q Consensus 160 v~g~--wl~~l~ 169 (298)
.... ++.++.
T Consensus 105 ~l~dp~~~~~i~ 116 (234)
T cd04732 105 AVKNPELVKELL 116 (234)
T ss_pred HHhChHHHHHHH
Confidence 7643 455554
No 270
>PLN02546 glutathione reductase
Probab=41.39 E-value=96 Score=32.21 Aligned_cols=60 Identities=25% Similarity=0.370 Sum_probs=45.0
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC---CCchhhhhhhHHHHHHcCCceeeh
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP---SEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G---~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
++|+|++| |+-..-+|+|..|.+.|.+|.++..... ..+.++...++++|.++||++...
T Consensus 251 ~~k~V~VI-------GgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~ 313 (558)
T PLN02546 251 KPEKIAIV-------GGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTE 313 (558)
T ss_pred cCCeEEEE-------CCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeC
Confidence 46788887 4445789999999999999999984432 134555556788888999998754
No 271
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=41.38 E-value=2.7e+02 Score=28.28 Aligned_cols=108 Identities=18% Similarity=0.172 Sum_probs=64.4
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe-ccCCCCc--hhhhhhhHHHHHHc---CCceeehhchhH
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT-IQKPSEE--DEVIYSLEHKMWDR---GVQVISAKGQET 144 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~-~~~G~~~--g~v~~~L~~kll~r---gI~v~~~k~~~~ 144 (298)
+..||++.+.. .|-.+..+++.|.+.|..+.+.. +.+.+.. .+. .+++.+. +..++.+.....
T Consensus 306 ~l~Gkrv~i~g-------~~~~~~~l~~fl~Elg~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~v~~~~d~~e 374 (457)
T TIGR02932 306 FFANKKVAIFG-------HPDLVIGLAEFCLEVELEPVLLLLGDDNSKYKKDPR----IEELKNKANFDIEVVWNADLWE 374 (457)
T ss_pred HHcCCeeEEEc-------CHHHHHHHHHHHHHCCCeEEEEEECCCCccccchHH----HHHHHhhcCCCceEEeCCCHHH
Confidence 46899997763 56789999999999999876665 3322211 222 2344332 455555544433
Q ss_pred HH-h---hhccCEEEEechhchHHHHHHhhccCCCC--CCceEEEeeeccccccc
Q 022363 145 IN-T---ALKADLIVLNTAVAGKWLDAVLKEDVPRV--LPNVLWWIHEMRGHYFK 193 (298)
Q Consensus 145 i~-~---A~~aDLVIaNT~v~g~wl~~l~~~~~p~~--~~pVIWWIHE~r~~Yf~ 193 (298)
+. . ..++|++|.|+- ++++.+= .++|.. ..|+.-.++..++-|..
T Consensus 375 l~~~l~~~~~~dllig~s~--~~~~A~k--lgip~~~~g~Pv~Dr~~~~~~~~~G 425 (457)
T TIGR02932 375 LEKRIKAKLDIDLIMGHSK--GRYVAID--ANIPMVRVGFPTFDRAGLYRKPVIG 425 (457)
T ss_pred HHHHHhhcCCCCEEEECCc--hHHHHHH--cCCCEEEecCCceeecccCCCCCCc
Confidence 33 1 347999999996 3444422 355554 23766666666666665
No 272
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=41.36 E-value=6.1 Score=39.75 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=18.6
Q ss_pred ccccEEEEEeccCCCC---CchHHHHH
Q 022363 72 MKSKLVLLVSHELSLS---GGPLLLME 95 (298)
Q Consensus 72 ~~~KkILLISHELS~T---GAPLlLle 95 (298)
.-.|+|+||||||+-+ |.-|.+|+
T Consensus 213 ~l~KTIvFitHDLdEAlriG~rIaimk 239 (386)
T COG4175 213 KLKKTIVFITHDLDEALRIGDRIAIMK 239 (386)
T ss_pred HhCCeEEEEecCHHHHHhccceEEEec
Confidence 3579999999999966 76666653
No 273
>PRK05866 short chain dehydrogenase; Provisional
Probab=41.29 E-value=1.9e+02 Score=26.63 Aligned_cols=37 Identities=16% Similarity=0.060 Sum_probs=26.9
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEecc
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (298)
-|++|+||+++ |+.-+=.++|+.|.+.|++|.++..+
T Consensus 37 ~~~~k~vlItG------asggIG~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 37 DLTGKRILLTG------ASSGIGEAAAEQFARRGATVVAVARR 73 (293)
T ss_pred CCCCCEEEEeC------CCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 35778877654 22346778999999999998877643
No 274
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=41.17 E-value=1.9e+02 Score=26.16 Aligned_cols=32 Identities=16% Similarity=0.049 Sum_probs=19.4
Q ss_pred hhccCEEEEechhc---hHHHHHHhhccCCCCCCceEEEe
Q 022363 148 ALKADLIVLNTAVA---GKWLDAVLKEDVPRVLPNVLWWI 184 (298)
Q Consensus 148 A~~aDLVIaNT~v~---g~wl~~l~~~~~p~~~~pVIWWI 184 (298)
..++|-||+.+.-. -..++++.+.++ |+|.+=
T Consensus 54 ~~~~DgiIi~~~~~~~~~~~~~~~~~~~i-----PvV~v~ 88 (298)
T cd06302 54 AQGVDAIAVVPNDPDALEPVLKKAREAGI-----KVVTHD 88 (298)
T ss_pred hcCCCEEEEecCCHHHHHHHHHHHHHCCC-----eEEEEc
Confidence 45789888876532 245555554444 676663
No 275
>PTZ00052 thioredoxin reductase; Provisional
Probab=41.14 E-value=1e+02 Score=31.16 Aligned_cols=52 Identities=15% Similarity=0.154 Sum_probs=39.1
Q ss_pred CchHHHHHHHHHHHhCCCeEEEEeccC--CCCchhhhhhhHHHHHHcCCceeeh
Q 022363 88 GGPLLLMELAFLLRGVGTKVNWITIQK--PSEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 88 GAPLlLleLA~~Lkq~G~~V~vL~~~~--G~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
|+-..-+|+|..|.+.|.+|.++.... +..+.++...+.+.|.++||.++..
T Consensus 189 GgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~ 242 (499)
T PTZ00052 189 GASYIGLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEG 242 (499)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEEEcCcccccCCHHHHHHHHHHHHHcCCEEEcC
Confidence 555678999999999999999997421 1234455667788888889988754
No 276
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=41.00 E-value=1e+02 Score=30.11 Aligned_cols=85 Identities=24% Similarity=0.139 Sum_probs=55.9
Q ss_pred EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC----------------------CchhhhhhhHHHHHH-cC
Q 022363 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS----------------------EEDEVIYSLEHKMWD-RG 133 (298)
Q Consensus 77 ILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~----------------------~~g~v~~~L~~kll~-rg 133 (298)
+=+|..+-++-=-|+-+++.++.|.+.|+.|.-.++.++- ..|.......+-+.+ -.
T Consensus 110 LEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~ 189 (267)
T CHL00162 110 LEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIIIENAK 189 (267)
T ss_pred EEEeCCCcccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHHHcCC
Confidence 5567788888889999999999999999999887766542 122222222222222 25
Q ss_pred CceeehhchhH-----HHhhhccCEEEEechhc
Q 022363 134 VQVISAKGQET-----INTALKADLIVLNTAVA 161 (298)
Q Consensus 134 I~v~~~k~~~~-----i~~A~~aDLVIaNT~v~ 161 (298)
++|+.+-|.-+ .-....+|-|.+||+++
T Consensus 190 vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIa 222 (267)
T CHL00162 190 IPVIIDAGIGTPSEASQAMELGASGVLLNTAVA 222 (267)
T ss_pred CcEEEeCCcCCHHHHHHHHHcCCCEEeecceee
Confidence 56665533222 11467999999999986
No 277
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=40.86 E-value=71 Score=30.95 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=34.1
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~ 116 (298)
=++||++|+|= |.=.||+ -|.+.|+.|++.|...+.+..-+|-
T Consensus 214 dv~Gr~viIVD-DIidTG~--Tl~~aa~~Lk~~GA~~V~~~~tHgl 256 (320)
T PRK02269 214 NVKGKKCILID-DMIDTAG--TICHAADALAEAGATEVYASCTHPV 256 (320)
T ss_pred ccCCCEEEEEe-eecCcHH--HHHHHHHHHHHCCCCEEEEEEECcc
Confidence 36899888774 5556677 4899999999999998777777764
No 278
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=40.72 E-value=1e+02 Score=31.31 Aligned_cols=84 Identities=17% Similarity=0.147 Sum_probs=48.3
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc--CCceeehhchhHHH
Q 022363 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR--GVQVISAKGQETIN 146 (298)
Q Consensus 69 ~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~r--gI~v~~~k~~~~i~ 146 (298)
..+.+||++.+.... .-|..+.. .|++.|.+++....+.+. .++. ++.+... +..++++.....+.
T Consensus 330 ~~~L~GKrv~i~~g~----~~~~~~~~---~l~ELGmevv~~g~~~~~-~~~~----~~~~~~~~~~~~i~~~~d~~el~ 397 (466)
T TIGR01282 330 RPRLEGKTVMLYVGG----LRPRHVIG---AFEDLGMEVIGTGYEFAH-NDDY----ERTTKYMKDGTLIYDDVTHYEFE 397 (466)
T ss_pred HHhcCCCEEEEECCC----CcHHHHHH---HHHHCCCEEEEEeeecCC-HHHH----HHHHHhcCCCeEEeeCCCHHHHH
Confidence 457899999887521 13444444 588999999866554321 1122 2222222 55555553333332
Q ss_pred ---hhhccCEEEEechhchHHHH
Q 022363 147 ---TALKADLIVLNTAVAGKWLD 166 (298)
Q Consensus 147 ---~A~~aDLVIaNT~v~g~wl~ 166 (298)
...++|++|.|+- ++++.
T Consensus 398 ~~i~~~~pDl~ig~~~--~~~~a 418 (466)
T TIGR01282 398 EFVEKLKPDLVGSGIK--EKYVF 418 (466)
T ss_pred HHHHHhCCCEEEecCC--cccee
Confidence 3459999999985 44443
No 279
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=40.54 E-value=54 Score=35.85 Aligned_cols=82 Identities=29% Similarity=0.331 Sum_probs=56.2
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC----CCchhhhhhhHHHHHHcCCceeehhchhHHH--
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP----SEEDEVIYSLEHKMWDRGVQVISAKGQETIN-- 146 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G----~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~-- 146 (298)
.+|++++| |+-++-+|+|..|++.|.+|.++..... ..+.+.-..+.+++.++||++.......+|.
T Consensus 144 ~~k~vvVI-------GgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~ 216 (847)
T PRK14989 144 RSKRGAVV-------GGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQE 216 (847)
T ss_pred cCCeEEEE-------CCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEec
Confidence 46788887 4457889999999999999998874321 1234444567888889999988654222221
Q ss_pred -------------hhhccCEEEEechhc
Q 022363 147 -------------TALKADLIVLNTAVA 161 (298)
Q Consensus 147 -------------~A~~aDLVIaNT~v~ 161 (298)
....+|+||.-+-+-
T Consensus 217 ~~~~~~~v~~~dG~~i~~D~Vv~A~G~r 244 (847)
T PRK14989 217 GVEARKTMRFADGSELEVDFIVFSTGIR 244 (847)
T ss_pred CCCceEEEEECCCCEEEcCEEEECCCcc
Confidence 124689998876543
No 280
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=40.50 E-value=1.3e+02 Score=29.17 Aligned_cols=84 Identities=20% Similarity=0.280 Sum_probs=49.8
Q ss_pred EEEEecc-CCCCCchHHHHHHHHHHHhCCCeEEEEe-ccCCCC----------chhhhhhhHHHHHHc--CCceeehhch
Q 022363 77 VLLVSHE-LSLSGGPLLLMELAFLLRGVGTKVNWIT-IQKPSE----------EDEVIYSLEHKMWDR--GVQVISAKGQ 142 (298)
Q Consensus 77 ILLISHE-LS~TGAPLlLleLA~~Lkq~G~~V~vL~-~~~G~~----------~g~v~~~L~~kll~r--gI~v~~~k~~ 142 (298)
|+-|..= .+.||-==+...|+++|++.|..+.+++ +.|+.. .+.-..+=|..|+.+ +++|+-.+..
T Consensus 30 VIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~~~V~V~~dR 109 (311)
T TIGR00682 30 VVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGSKTKKYTLVGSKKHTASEVGDEPVLLAKYLHATVVASKDR 109 (311)
T ss_pred EEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCeeeeCCCCChHHcCcHHHHhhhhcCCcEEEeChH
Confidence 5555543 2566766677789999999999999999 555421 111112345566665 6787754322
Q ss_pred -hHHHhh---hccCEEEEechh
Q 022363 143 -ETINTA---LKADLIVLNTAV 160 (298)
Q Consensus 143 -~~i~~A---~~aDLVIaNT~v 160 (298)
++...+ .++|+||..=.-
T Consensus 110 ~~a~~~~~~~~~~dviilDDGf 131 (311)
T TIGR00682 110 KDAILLILEQLDPDVIILDDGL 131 (311)
T ss_pred HHHHHHHHhcCCCCEEEECCCC
Confidence 233322 257777775443
No 281
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=40.41 E-value=41 Score=25.32 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=28.2
Q ss_pred HHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh
Q 022363 95 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 95 eLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
.+++.|.+.|.++++...-++ +....|.++||.++..
T Consensus 44 ~~~~~l~~~~v~~li~~~iG~--------~~~~~L~~~gI~v~~~ 80 (94)
T PF02579_consen 44 KIAKFLAEEGVDVLICGGIGE--------GAFRALKEAGIKVYQG 80 (94)
T ss_dssp HHHHHHHHTTESEEEESCSCH--------HHHHHHHHTTSEEEES
T ss_pred hHHHHHHHcCCCEEEEeCCCH--------HHHHHHHHCCCEEEEc
Confidence 456667778888877775543 5678999999999985
No 282
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=40.39 E-value=1.4e+02 Score=28.79 Aligned_cols=86 Identities=24% Similarity=0.233 Sum_probs=58.5
Q ss_pred EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC----------------------CchhhhhhhHHHHHHc-C
Q 022363 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS----------------------EEDEVIYSLEHKMWDR-G 133 (298)
Q Consensus 77 ILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~----------------------~~g~v~~~L~~kll~r-g 133 (298)
+=+|..+-++---|.-+++.++.|.+.|+.|.-.+..+.. ..|...+.+.+.+.+. +
T Consensus 96 lEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~ 175 (248)
T cd04728 96 LEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERAD 175 (248)
T ss_pred EEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCC
Confidence 4567888888899999999999999999999844433322 2222234445566554 7
Q ss_pred CceeehhchhHHH-----hhhccCEEEEechhch
Q 022363 134 VQVISAKGQETIN-----TALKADLIVLNTAVAG 162 (298)
Q Consensus 134 I~v~~~k~~~~i~-----~A~~aDLVIaNT~v~g 162 (298)
++|+-+=+..+=+ ....+|-|++||++.-
T Consensus 176 vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 176 VPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred CcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence 8888663332211 4579999999999863
No 283
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=40.33 E-value=2e+02 Score=24.94 Aligned_cols=78 Identities=14% Similarity=0.239 Sum_probs=43.4
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--ee-h-hchhHHH-
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--IS-A-KGQETIN- 146 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v--~~-~-k~~~~i~- 146 (298)
|++|++|+. +-+| -+=.++++.|.+.|++|.++. +..+.. ..+.+++.+.+..+ +. | .....+.
T Consensus 5 ~~~~~vlIt----Gasg--~iG~~la~~l~~~G~~v~~~~-r~~~~~----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 73 (262)
T PRK13394 5 LNGKTAVVT----GAAS--GIGKEIALELARAGAAVAIAD-LNQDGA----NAVADEINKAGGKAIGVAMDVTNEDAVNA 73 (262)
T ss_pred CCCCEEEEE----CCCC--hHHHHHHHHHHHCCCeEEEEe-CChHHH----HHHHHHHHhcCceEEEEECCCCCHHHHHH
Confidence 567877665 2233 356688999999999987665 332211 12344555445333 21 1 2222222
Q ss_pred -------hhhccCEEEEechh
Q 022363 147 -------TALKADLIVLNTAV 160 (298)
Q Consensus 147 -------~A~~aDLVIaNT~v 160 (298)
.....|.||-|...
T Consensus 74 ~~~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 74 GIDKVAERFGSVDILVSNAGI 94 (262)
T ss_pred HHHHHHHHcCCCCEEEECCcc
Confidence 12358999998865
No 284
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=40.30 E-value=1.9e+02 Score=27.80 Aligned_cols=79 Identities=15% Similarity=0.120 Sum_probs=47.6
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhcc
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~a 151 (298)
++|.+|.+|.+- ++ +.-.++..|...|.+|.+.+-++=....++...+++...+.|..+......+ +...++
T Consensus 146 l~g~~v~~vGd~-~~-----v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~--~a~~~a 217 (304)
T TIGR00658 146 LKGVKVVYVGDG-NN-----VCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPV--EAVKGA 217 (304)
T ss_pred CCCcEEEEEeCC-Cc-----hHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHH--HHhCCC
Confidence 689999999964 43 5566666777789999998833221223333333333445565543221111 256799
Q ss_pred CEEEEec
Q 022363 152 DLIVLNT 158 (298)
Q Consensus 152 DLVIaNT 158 (298)
|.|++..
T Consensus 218 Dvvy~~~ 224 (304)
T TIGR00658 218 DVIYTDV 224 (304)
T ss_pred CEEEEcC
Confidence 9999954
No 285
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=39.93 E-value=94 Score=25.05 Aligned_cols=66 Identities=23% Similarity=0.239 Sum_probs=41.7
Q ss_pred EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh-h----chhHH-H--hh
Q 022363 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA-K----GQETI-N--TA 148 (298)
Q Consensus 77 ILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~-k----~~~~i-~--~A 148 (298)
|++.-||.+- =-++++|+.|.+.|+++.... +..+-|.+.|+++-.- + +...+ + ..
T Consensus 2 i~isv~d~~K----~~~~~~a~~l~~~G~~i~AT~------------gTa~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~ 65 (112)
T cd00532 2 VFLSVSDHVK----AMLVDLAPKLSSDGFPLFATG------------GTSRVLADAGIPVRAVSKRHEDGEPTVDAAIAE 65 (112)
T ss_pred EEEEEEcccH----HHHHHHHHHHHHCCCEEEECc------------HHHHHHHHcCCceEEEEecCCCCCcHHHHHHhC
Confidence 4555565543 356799999999999986443 2345566679886532 1 22222 2 36
Q ss_pred -hccCEEEEec
Q 022363 149 -LKADLIVLNT 158 (298)
Q Consensus 149 -~~aDLVIaNT 158 (298)
.++|+||...
T Consensus 66 ~g~idlVIn~~ 76 (112)
T cd00532 66 KGKFDVVINLR 76 (112)
T ss_pred CCCEEEEEEcC
Confidence 7999998743
No 286
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=39.88 E-value=2.7e+02 Score=25.31 Aligned_cols=90 Identities=14% Similarity=0.173 Sum_probs=53.7
Q ss_pred HHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh----c------hhHHH--hhhccCEEEEechh-
Q 022363 94 MELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK----G------QETIN--TALKADLIVLNTAV- 160 (298)
Q Consensus 94 leLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k----~------~~~i~--~A~~aDLVIaNT~v- 160 (298)
.-++.++++.|.+-+.+...+.+++......+.+.+.+.|+.+.... + ...++ .+.++|.||+.+-.
T Consensus 149 ~a~~~~~~~~~~~~v~~l~~~~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vvv~~~~~~ 228 (348)
T cd06350 149 LAIVALLKHFGWTWVGLVYSDDDYGRSGLSDLEEELEKNGICIAFVEAIPPSSTEEDIKRILKKLKSSTARVIVVFGDED 228 (348)
T ss_pred HHHHHHHHHCCCeEEEEEEecchhHHHHHHHHHHHHHHCCCcEEEEEEccCCCcHHHHHHHHHHHHhCCCcEEEEEeCcH
Confidence 44567777878764444433444556677788888888899887421 1 11122 24577999886543
Q ss_pred -chHHHHHHhhccCCCCCCceEEEeeec
Q 022363 161 -AGKWLDAVLKEDVPRVLPNVLWWIHEM 187 (298)
Q Consensus 161 -~g~wl~~l~~~~~p~~~~pVIWWIHE~ 187 (298)
+...+.++.+.. ..+..||+.+.
T Consensus 229 ~~~~~~~~a~~~g----~~~~~~i~~~~ 252 (348)
T cd06350 229 DALRLFCEAYKLG----MTGKYWIISTD 252 (348)
T ss_pred HHHHHHHHHHHhC----CCCeEEEEEcc
Confidence 344556654332 34667787664
No 287
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.83 E-value=2.2e+02 Score=24.94 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=24.3
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (298)
+++|+||+.. .+.. .=+=..+++.|.+.|++|.++..
T Consensus 3 l~~k~vlItG--as~~--~giG~~la~~l~~~G~~vi~~~r 39 (256)
T PRK12748 3 LMKKIALVTG--ASRL--NGIGAAVCRRLAAKGIDIFFTYW 39 (256)
T ss_pred CCCcEEEEeC--CCCC--CCHHHHHHHHHHHcCCcEEEEcC
Confidence 3677776654 2211 12566799999999998877653
No 288
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=39.79 E-value=94 Score=27.94 Aligned_cols=78 Identities=15% Similarity=0.144 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCC-CchhhhhhhHHHHHHc-CCceeehhchhHHH-----hhhccCEEEEechhch--
Q 022363 92 LLMELAFLLRGVGTKVNWITIQKPS-EEDEVIYSLEHKMWDR-GVQVISAKGQETIN-----TALKADLIVLNTAVAG-- 162 (298)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~-~~g~v~~~L~~kll~r-gI~v~~~k~~~~i~-----~A~~aDLVIaNT~v~g-- 162 (298)
-..++|+.|.+.|.+-..++.-.+. ..+.....+..++.+. ++|++-.-+.++.+ ....+|.|++||..-.
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~p 107 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVENP 107 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhhCh
Confidence 4568889999999996666633222 2333444666667665 78888765554443 1346999999998642
Q ss_pred HHHHHHh
Q 022363 163 KWLDAVL 169 (298)
Q Consensus 163 ~wl~~l~ 169 (298)
.++.++.
T Consensus 108 ~~~~~i~ 114 (243)
T cd04731 108 ELIREIA 114 (243)
T ss_pred HHHHHHH
Confidence 4455544
No 289
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=39.76 E-value=98 Score=30.17 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=40.4
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC---CchhhhhhhHHHHHHcCCceeeh
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS---EEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~---~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
+|++++| |+-..-+|+|..|.+.|.+|.++...+.. .+.++...+++.+.++ |++...
T Consensus 169 ~k~v~VI-------GgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~ 229 (460)
T PRK06292 169 PKSLAVI-------GGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLG 229 (460)
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcC
Confidence 4555555 55567899999999999999998743311 2345656667777777 877643
No 290
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=39.68 E-value=1.6e+02 Score=28.41 Aligned_cols=78 Identities=10% Similarity=0.115 Sum_probs=46.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcC-CceeehhchhHHHhhhc
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRG-VQVISAKGQETINTALK 150 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rg-I~v~~~k~~~~i~~A~~ 150 (298)
.+|++|.+|++ -|+ +.-.++..+...|.+|.+.+-++- ..++.....+...+.| +.+.++ .-+...+
T Consensus 151 l~g~~va~vGd-~~r-----v~~Sl~~~~~~~G~~v~~~~P~~~--~~~~~~~~~~~~~~~g~i~~~~d----~~~av~~ 218 (311)
T PRK14804 151 LNQKQLTYIGV-HNN-----VVNSLIGITAALGIHLTLVTPIAA--KENIHAQTVERAKKKGTLSWEMN----LHKAVSH 218 (311)
T ss_pred CCCCEEEEECC-CCc-----HHHHHHHHHHHcCCEEEEECCCCc--cHHHHHHHHHHHHhcCCeEEEeC----HHHHhCC
Confidence 58999999994 344 344555556667999999884432 1222222223333334 343333 1225679
Q ss_pred cCEEEEechhc
Q 022363 151 ADLIVLNTAVA 161 (298)
Q Consensus 151 aDLVIaNT~v~ 161 (298)
+|.|+..|-+.
T Consensus 219 aDvvy~d~w~~ 229 (311)
T PRK14804 219 ADYVYTDTWLD 229 (311)
T ss_pred CCEEEeeeeEE
Confidence 99999987764
No 291
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=39.47 E-value=1.4e+02 Score=28.68 Aligned_cols=39 Identities=28% Similarity=0.334 Sum_probs=31.4
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHH--HhCCCeEEEEeccC
Q 022363 75 KLVLLVSHELSLSGGPLLLMELAFLL--RGVGTKVNWITIQK 114 (298)
Q Consensus 75 KkILLISHELS~TGAPLlLleLA~~L--kq~G~~V~vL~~~~ 114 (298)
|.+++|+=.+ .||=-++++++|+.| .+.|..+..++..+
T Consensus 1 K~v~~I~G~a-GTGKTvla~~l~~~l~~~~~~~~~~~l~~n~ 41 (352)
T PF09848_consen 1 KQVILITGGA-GTGKTVLALNLAKELQNSEEGKKVLYLCGNH 41 (352)
T ss_pred CeEEEEEecC-CcCHHHHHHHHHHHhhccccCCceEEEEecc
Confidence 5677777655 479999999999999 77788888888554
No 292
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=39.28 E-value=2.2e+02 Score=28.74 Aligned_cols=88 Identities=13% Similarity=0.036 Sum_probs=49.1
Q ss_pred ccccEEEEEec-cCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhc
Q 022363 72 MKSKLVLLVSH-ELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (298)
Q Consensus 72 ~~~KkILLISH-ELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~ 150 (298)
.+|++|.++.- +++..-+=-+.-.++..+...|.+|.+.+-++-....+++...++...+.|..+.... ..-+.+.+
T Consensus 185 l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~--d~~eav~~ 262 (395)
T PRK07200 185 LKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVN--SMEEAFKD 262 (395)
T ss_pred cCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEc--CHHHHhCC
Confidence 57889999972 4432211224445555566679999998844211123332222333444565543211 11236789
Q ss_pred cCEEEEechhc
Q 022363 151 ADLIVLNTAVA 161 (298)
Q Consensus 151 aDLVIaNT~v~ 161 (298)
+|.|+..+-++
T Consensus 263 aDvVYtd~W~s 273 (395)
T PRK07200 263 ADIVYPKSWAP 273 (395)
T ss_pred CCEEEEcCeee
Confidence 99999997653
No 293
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=39.27 E-value=1.7e+02 Score=25.33 Aligned_cols=76 Identities=18% Similarity=0.259 Sum_probs=44.2
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCc--eee-h-hchhHHH-
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ--VIS-A-KGQETIN- 146 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~--v~~-~-k~~~~i~- 146 (298)
++||+||+++- +|+ +=..+|+.|.+.|+.|.++..... + .+.+++.+.+.. .+. | ....++.
T Consensus 3 ~~~k~vlItGa----s~g--IG~~ia~~l~~~G~~vi~~~r~~~---~----~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 69 (248)
T TIGR01832 3 LEGKVALVTGA----NTG--LGQGIAVGLAEAGADIVGAGRSEP---S----ETQQQVEALGRRFLSLTADLSDIEAIKA 69 (248)
T ss_pred CCCCEEEEECC----Cch--HHHHHHHHHHHCCCEEEEEcCchH---H----HHHHHHHhcCCceEEEECCCCCHHHHHH
Confidence 57898888753 222 566888999999999887763221 1 234455444422 221 1 2222222
Q ss_pred -------hhhccCEEEEechh
Q 022363 147 -------TALKADLIVLNTAV 160 (298)
Q Consensus 147 -------~A~~aDLVIaNT~v 160 (298)
.....|.||.|...
T Consensus 70 ~~~~~~~~~~~~d~li~~ag~ 90 (248)
T TIGR01832 70 LVDSAVEEFGHIDILVNNAGI 90 (248)
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 12468999988765
No 294
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=39.26 E-value=69 Score=32.45 Aligned_cols=83 Identities=17% Similarity=0.256 Sum_probs=55.4
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCc--eeehhchhHHHh
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ--VISAKGQETINT 147 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~--v~~~k~~~~i~~ 147 (298)
+-++||+|||| .|.=.||+ -|.+.++.||+.|+.-+.+..-.|+..++-.+++ ....+. +..++..+++..
T Consensus 336 ~~v~gK~VlLV-DDvitTG~--Tl~~a~~~Lr~aGA~~V~v~~~hp~~~~~~~~~i----~~~~~~~li~~~~~~~ei~~ 408 (445)
T PRK08525 336 KVLEGKRIVVI-DDSIVRGT--TSKKIVSLLRAAGAKEIHLRIACPEIKFPCYYGI----DTPTFEELISANKSVEEVRK 408 (445)
T ss_pred cccCCCeEEEE-ecccCcHH--HHHHHHHHHHhcCCCEEEEEEECCCcCCchhhhC----cCCChhhEEEcCCCHHHHHH
Confidence 34789999888 56667788 4568999999999886666655565333332222 222222 234556777887
Q ss_pred hhccCEEEEech
Q 022363 148 ALKADLIVLNTA 159 (298)
Q Consensus 148 A~~aDLVIaNT~ 159 (298)
..++|-+.-.|+
T Consensus 409 ~~~adsl~~ls~ 420 (445)
T PRK08525 409 YIGADSLSFLSI 420 (445)
T ss_pred HhCCCeEeccCH
Confidence 889998888887
No 295
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=39.18 E-value=1.3e+02 Score=29.86 Aligned_cols=59 Identities=19% Similarity=0.376 Sum_probs=42.3
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccC---CCCchhhhhhhHHHHHHcCCceeeh
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK---PSEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~---G~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
+|+|++|. |++ .-+|+|..|.+.|.+|.++-... +..+.++...+++.|.++||++...
T Consensus 174 ~~~vvIIG------gG~-ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~ 235 (466)
T PRK06115 174 PKHLVVIG------AGV-IGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLG 235 (466)
T ss_pred CCeEEEEC------CCH-HHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEC
Confidence 46666663 443 57899999999999999886322 1133456667888888899998855
No 296
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=39.15 E-value=78 Score=21.97 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=26.5
Q ss_pred cCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEE
Q 022363 238 GNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI 275 (298)
Q Consensus 238 ~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~ 275 (298)
+.+++.-+ ++.++ +-+.+.+.+|+|++++.|..
T Consensus 10 grt~eqk~----~l~~~-i~~~l~~~~g~~~~~v~V~i 42 (58)
T cd00491 10 GRTDEQKR----ELIER-VTEAVSEILGAPEATIVVII 42 (58)
T ss_pred CCCHHHHH----HHHHH-HHHHHHHHhCcCcccEEEEE
Confidence 45666666 88888 88899999999999987654
No 297
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=39.05 E-value=56 Score=28.73 Aligned_cols=38 Identities=21% Similarity=0.196 Sum_probs=31.1
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCe-EEEEe
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTK-VNWIT 111 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~-V~vL~ 111 (298)
-.+||+||+| .|.-.||+ -|.+.++.|++.|.. |.+.+
T Consensus 94 ~v~gk~VLIV-DDIidTG~--Tl~~~~~~Lk~~Ga~~V~~av 132 (181)
T PRK09162 94 SLKGRTVLVV-DDILDEGH--TLAAIRDRCLEMGAAEVYSAV 132 (181)
T ss_pred CCCCCEEEEE-ccccCcHH--HHHHHHHHHHhCCCCEEEEEE
Confidence 4799999999 89999999 667999999999864 44444
No 298
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=38.99 E-value=1.6e+02 Score=26.01 Aligned_cols=79 Identities=13% Similarity=0.155 Sum_probs=43.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee----ehhchhHHH-
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI----SAKGQETIN- 146 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~----~~k~~~~i~- 146 (298)
+++|++|++.-- + -+=.++++.|.+.|++|+++. +..+ .. ..+.+++.+.|.++. +-...+++.
T Consensus 8 ~~~k~~lItGa~-~-----~iG~~ia~~l~~~G~~vv~~~-~~~~---~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 76 (265)
T PRK07097 8 LKGKIALITGAS-Y-----GIGFAIAKAYAKAGATIVFND-INQE---LV-DKGLAAYRELGIEAHGYVCDVTDEDGVQA 76 (265)
T ss_pred CCCCEEEEeCCC-c-----hHHHHHHHHHHHCCCeEEEEe-CCHH---HH-HHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 367766665322 2 234688999999999987764 3221 11 123344444443332 112222222
Q ss_pred -------hhhccCEEEEechhc
Q 022363 147 -------TALKADLIVLNTAVA 161 (298)
Q Consensus 147 -------~A~~aDLVIaNT~v~ 161 (298)
....+|.+|.|....
T Consensus 77 ~~~~~~~~~~~id~li~~ag~~ 98 (265)
T PRK07097 77 MVSQIEKEVGVIDILVNNAGII 98 (265)
T ss_pred HHHHHHHhCCCCCEEEECCCCC
Confidence 124689999998764
No 299
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=38.71 E-value=1.1e+02 Score=27.65 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=38.4
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe--ccCCCCchhhhhhhHHHHHHcCCceeeh
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT--IQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~--~~~G~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
-+|++||+|= |.=.||+ -+..+.+.+++.|.+|.-+. ..++.. +-.+++.+.|+++..-
T Consensus 115 ~~G~rVlIVD-DviaTGg--T~~a~~~lv~~aGa~vvgv~~lvd~~~~------~g~~~l~~~g~~~~sl 175 (189)
T PRK09219 115 SEGDRVLIID-DFLANGQ--AALGLIDIIEQAGAKVAGIGIVIEKSFQ------DGRKLLEEKGYRVESL 175 (189)
T ss_pred CCCCEEEEEe-ehhhcCh--HHHHHHHHHHHCCCEEEEEEEEEEccCc------cHHHHHHhcCCcEEEE
Confidence 3799998884 5666777 57788899999999965433 222211 1145666778887643
No 300
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=38.45 E-value=1e+02 Score=27.29 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=27.6
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEecc
Q 022363 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (298)
Q Consensus 69 ~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (298)
...|++|++|+.. |+.=+=.++|+.|.+.|+.|.++..+
T Consensus 3 ~~~l~~k~vlItG------as~gIG~~ia~~l~~~G~~v~~~~~~ 41 (260)
T PRK08416 3 SNEMKGKTLVISG------GTRGIGKAIVYEFAQSGVNIAFTYNS 41 (260)
T ss_pred ccccCCCEEEEeC------CCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 4567888776653 33336678999999999998766533
No 301
>PRK12744 short chain dehydrogenase; Provisional
Probab=38.41 E-value=2.7e+02 Score=24.34 Aligned_cols=82 Identities=15% Similarity=0.100 Sum_probs=44.6
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--e--ehhchhHHH-
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--I--SAKGQETIN- 146 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v--~--~~k~~~~i~- 146 (298)
+++|++|+++ -+|+ +=.++|+.|.+.|++|+++..+.+. ..+-...+.+++...+..+ + +-...+++.
T Consensus 6 l~~k~vlItG----a~~g--IG~~~a~~l~~~G~~vv~i~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 78 (257)
T PRK12744 6 LKGKVVLIAG----GAKN--LGGLIARDLAAQGAKAVAIHYNSAA-SKADAEETVAAVKAAGAKAVAFQADLTTAAAVEK 78 (257)
T ss_pred CCCcEEEEEC----CCch--HHHHHHHHHHHCCCcEEEEecCCcc-chHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHH
Confidence 4678777664 2222 5678999999999998877644321 1222223344444444332 1 112222332
Q ss_pred -------hhhccCEEEEechh
Q 022363 147 -------TALKADLIVLNTAV 160 (298)
Q Consensus 147 -------~A~~aDLVIaNT~v 160 (298)
....+|.+|.|...
T Consensus 79 ~~~~~~~~~~~id~li~~ag~ 99 (257)
T PRK12744 79 LFDDAKAAFGRPDIAINTVGK 99 (257)
T ss_pred HHHHHHHhhCCCCEEEECCcc
Confidence 12478999877654
No 302
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=38.40 E-value=1.5e+02 Score=30.48 Aligned_cols=83 Identities=8% Similarity=0.097 Sum_probs=48.0
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHH-HhCCCeEEEEeccCCCCchhhhhhhHHHHHHc--CCceeehhc--hhH
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLL-RGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR--GVQVISAKG--QET 144 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~L-kq~G~~V~vL~~~~G~~~g~v~~~L~~kll~r--gI~v~~~k~--~~~ 144 (298)
.+..||++.++. .|-....+++.| ++.|.++++....-. +.-..+.+++... ++.+.+|.. .+.
T Consensus 301 ~~l~Gkrv~I~g-------d~~~a~~l~~~L~~ELGm~vv~~g~~~~----~~~~~~~~~~~~~~~~~~i~~D~~ei~~~ 369 (513)
T CHL00076 301 QNLTGKKAVVFG-------DATHAASMTKILAREMGIRVSCAGTYCK----HDAEWFKEQVQGFCDEILITDDHTEVGDM 369 (513)
T ss_pred cccCCCEEEEEc-------CchHHHHHHHHHHHhCCCEEEEecCccc----chhHHHHHHHHHhccCcEEecCHHHHHHH
Confidence 688999996663 455677788888 699999975543221 1111123334333 333334422 112
Q ss_pred HHhhhccCEEEEechhchHHHH
Q 022363 145 INTALKADLIVLNTAVAGKWLD 166 (298)
Q Consensus 145 i~~A~~aDLVIaNT~v~g~wl~ 166 (298)
| ...++|+||.|+- .+++.
T Consensus 370 I-~~~~pdliiGs~~--er~ia 388 (513)
T CHL00076 370 I-ARVEPSAIFGTQM--ERHIG 388 (513)
T ss_pred H-HhcCCCEEEECch--hhHHH
Confidence 2 2457999999983 44443
No 303
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.35 E-value=1.3e+02 Score=26.00 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=24.7
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (298)
+++|++++++ .+| -+=..+++.|.+.|++|.++..
T Consensus 5 ~~~~~vlVtG----~sg--~iG~~l~~~L~~~G~~Vi~~~r 39 (239)
T PRK07666 5 LQGKNALITG----AGR--GIGRAVAIALAKEGVNVGLLAR 39 (239)
T ss_pred CCCCEEEEEc----CCc--hHHHHHHHHHHHCCCEEEEEeC
Confidence 3567776654 233 3667889999999998877663
No 304
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=38.34 E-value=1.8e+02 Score=29.25 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=56.1
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHh----CCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHH---
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRG----VGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETI--- 145 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq----~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i--- 145 (298)
+++.|+|++-. .+|=.-.+..||..++. .|..|.+++..--- .+.. ..|..-....|+|+........+
T Consensus 173 ~~~vi~lvGpt--GvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R-~aa~-eQL~~~a~~lgvpv~~~~~~~~l~~~ 248 (388)
T PRK12723 173 KKRVFILVGPT--GVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR-IGAK-KQIQTYGDIMGIPVKAIESFKDLKEE 248 (388)
T ss_pred CCeEEEEECCC--CCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc-HHHH-HHHHHHhhcCCcceEeeCcHHHHHHH
Confidence 45678888765 77999999999988874 47889999844311 1111 12333333358888755433333
Q ss_pred -HhhhccCEEEEechhc
Q 022363 146 -NTALKADLIVLNTAVA 161 (298)
Q Consensus 146 -~~A~~aDLVIaNT~v~ 161 (298)
..+.++|+||+.|+--
T Consensus 249 L~~~~~~DlVLIDTaGr 265 (388)
T PRK12723 249 ITQSKDFDLVLVDTIGK 265 (388)
T ss_pred HHHhCCCCEEEEcCCCC
Confidence 3457999999999954
No 305
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=38.23 E-value=89 Score=30.40 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=33.2
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~ 116 (298)
=++||.+++|= |.=.||+ -|.+.++.||+.|+.-+.+..-+|-
T Consensus 214 dv~Gr~viIVD-DIidTG~--Tl~~aa~~Lk~~GA~~V~~~~THgv 256 (319)
T PRK04923 214 DVQGKTCVLVD-DLVDTAG--TLCAAAAALKQRGALKVVAYITHPV 256 (319)
T ss_pred CCCCCEEEEEe-cccCchH--HHHHHHHHHHHCCCCEEEEEEECcc
Confidence 37999887774 5556677 4899999999999987666666664
No 306
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=38.13 E-value=1.7e+02 Score=29.41 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=42.8
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcC--Ccee--ehhchhHHH-
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRG--VQVI--SAKGQETIN- 146 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rg--I~v~--~~k~~~~i~- 146 (298)
++||+|++.+ -+| -+=.++++.|.+.|++|.++..+.. .+.+.+.+.+ +..+ +-...+++.
T Consensus 176 l~gK~VLITG----ASg--GIG~aLA~~La~~G~~Vi~l~r~~~--------~l~~~~~~~~~~v~~v~~Dvsd~~~v~~ 241 (406)
T PRK07424 176 LKGKTVAVTG----ASG--TLGQALLKELHQQGAKVVALTSNSD--------KITLEINGEDLPVKTLHWQVGQEAALAE 241 (406)
T ss_pred CCCCEEEEeC----CCC--HHHHHHHHHHHHCCCEEEEEeCCHH--------HHHHHHhhcCCCeEEEEeeCCCHHHHHH
Confidence 4678776542 333 3667888999999999988774321 1222222222 2122 112233343
Q ss_pred hhhccCEEEEechh
Q 022363 147 TALKADLIVLNTAV 160 (298)
Q Consensus 147 ~A~~aDLVIaNT~v 160 (298)
...++|.+|.|..+
T Consensus 242 ~l~~IDiLInnAGi 255 (406)
T PRK07424 242 LLEKVDILIINHGI 255 (406)
T ss_pred HhCCCCEEEECCCc
Confidence 35689999998765
No 307
>PRK12828 short chain dehydrogenase; Provisional
Probab=37.99 E-value=1.5e+02 Score=24.99 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=42.1
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh--hchhHHH---
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA--KGQETIN--- 146 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~--k~~~~i~--- 146 (298)
+++|++|++.- ||+ +=..+++.|.+.|++|.++..+.. ...+ ..+++...+..++.. ...+++.
T Consensus 5 ~~~k~vlItGa----tg~--iG~~la~~l~~~G~~v~~~~r~~~-~~~~----~~~~~~~~~~~~~~~D~~~~~~~~~~~ 73 (239)
T PRK12828 5 LQGKVVAITGG----FGG--LGRATAAWLAARGARVALIGRGAA-PLSQ----TLPGVPADALRIGGIDLVDPQAARRAV 73 (239)
T ss_pred CCCCEEEEECC----CCc--HhHHHHHHHHHCCCeEEEEeCChH-hHHH----HHHHHhhcCceEEEeecCCHHHHHHHH
Confidence 56787777642 222 446788888889999777664321 1111 123343444444321 1222222
Q ss_pred -----hhhccCEEEEechh
Q 022363 147 -----TALKADLIVLNTAV 160 (298)
Q Consensus 147 -----~A~~aDLVIaNT~v 160 (298)
...+.|.||-|...
T Consensus 74 ~~~~~~~~~~d~vi~~ag~ 92 (239)
T PRK12828 74 DEVNRQFGRLDALVNIAGA 92 (239)
T ss_pred HHHHHHhCCcCEEEECCcc
Confidence 12368999988754
No 308
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=37.94 E-value=1e+02 Score=30.73 Aligned_cols=79 Identities=18% Similarity=0.114 Sum_probs=45.2
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHH--cCCceeehhchhHHH
Q 022363 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD--RGVQVISAKGQETIN 146 (298)
Q Consensus 69 ~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~--rgI~v~~~k~~~~i~ 146 (298)
..+.+||++++.... .-|..+. ..|++.|.+|+.+..+-.. ++.. ++.+.. .+.-++.+.....+.
T Consensus 295 ~~~L~Gkrv~i~~g~----~~~~~~~---~~l~elGmevv~~g~~~~~-~~~~----~~~~~~~~~~~~i~~~~d~~e~~ 362 (421)
T cd01976 295 RPRLEGKTVMLYVGG----LRPRHYI---GAYEDLGMEVVGTGYEFAH-RDDY----ERTEVIPKEGTLLYDDVTHYELE 362 (421)
T ss_pred HHHcCCCEEEEECCC----CcHHHHH---HHHHHCCCEEEEEEeecCC-HHHH----hhHHhhcCCceEEEcCCCHHHHH
Confidence 467899999977521 1244444 5778999999987643221 1111 222222 233344443333332
Q ss_pred ---hhhccCEEEEech
Q 022363 147 ---TALKADLIVLNTA 159 (298)
Q Consensus 147 ---~A~~aDLVIaNT~ 159 (298)
...++|++|.|+-
T Consensus 363 ~~i~~~~pDliig~~~ 378 (421)
T cd01976 363 EFVKRLKPDLIGSGIK 378 (421)
T ss_pred HHHHHhCCCEEEecCc
Confidence 2459999999997
No 309
>PRK13530 arsenate reductase; Provisional
Probab=37.60 E-value=60 Score=27.20 Aligned_cols=79 Identities=19% Similarity=0.161 Sum_probs=39.9
Q ss_pred ccccEEEEEe-ccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH--hh
Q 022363 72 MKSKLVLLVS-HELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN--TA 148 (298)
Q Consensus 72 ~~~KkILLIS-HELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~--~A 148 (298)
|..|+||||. |+.-|+ |+. =.+++.+. |..+.+-+ .|-...++-+.-.+.+.+.|+++-..+ -+++. ..
T Consensus 1 ~~~~~vLFvC~~N~cRS--~mA-Eal~~~~~--~~~~~v~S--AG~~~~~~~~~a~~~l~e~Gi~~~~~~-s~~l~~~~~ 72 (133)
T PRK13530 1 MNKKTIYFLCTGNSCRS--QMA-EGWGKQYL--GDKWNVYS--AGIEAHGVNPNAIKAMKEVGIDISNQT-SDIIDNDIL 72 (133)
T ss_pred CCCCEEEEEcCCchhHH--HHH-HHHHHHhc--CCCEEEEC--CCCCCCCCCHHHHHHHHHcCCCcCCCc-cccCChhHh
Confidence 4568899998 555554 111 11112221 23344433 121112343445566677799875332 22232 35
Q ss_pred hccCEEEEec
Q 022363 149 LKADLIVLNT 158 (298)
Q Consensus 149 ~~aDLVIaNT 158 (298)
.++|+||+=+
T Consensus 73 ~~~D~ii~m~ 82 (133)
T PRK13530 73 NNADLVVTLC 82 (133)
T ss_pred ccCCEEEEec
Confidence 6899999754
No 310
>PRK08278 short chain dehydrogenase; Provisional
Probab=37.56 E-value=3e+02 Score=24.67 Aligned_cols=82 Identities=13% Similarity=0.208 Sum_probs=45.4
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhh---hhhhHHHHHHcCCcee----ehhchhH
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEV---IYSLEHKMWDRGVQVI----SAKGQET 144 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v---~~~L~~kll~rgI~v~----~~k~~~~ 144 (298)
|++|++|+++. +|+ +=.++|+.|.+.|++|+++...... .... ...+.+++...+..+. +-...++
T Consensus 4 ~~~k~vlItGa----s~g--IG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~ 76 (273)
T PRK08278 4 LSGKTLFITGA----SRG--IGLAIALRAARDGANIVIAAKTAEP-HPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQ 76 (273)
T ss_pred CCCCEEEEECC----Cch--HHHHHHHHHHHCCCEEEEEeccccc-ccchhhHHHHHHHHHHhcCCceEEEEecCCCHHH
Confidence 57888887765 222 4567888899999998887643221 1111 1223445554443322 1122222
Q ss_pred HH--------hhhccCEEEEechh
Q 022363 145 IN--------TALKADLIVLNTAV 160 (298)
Q Consensus 145 i~--------~A~~aDLVIaNT~v 160 (298)
+. ....+|.||.|...
T Consensus 77 i~~~~~~~~~~~g~id~li~~ag~ 100 (273)
T PRK08278 77 VAAAVAKAVERFGGIDICVNNASA 100 (273)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 22 12478999988764
No 311
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=37.50 E-value=1.3e+02 Score=24.68 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=42.8
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhC--CCeEEEEeccCCCCchhhhhhhHHHHHH-cCCceeehh-----chhHHH-
Q 022363 76 LVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWD-RGVQVISAK-----GQETIN- 146 (298)
Q Consensus 76 kILLISHELS~TGAPLlLleLA~~Lkq~--G~~V~vL~~~~G~~~g~v~~~L~~kll~-rgI~v~~~k-----~~~~i~- 146 (298)
+|.||.||-+-. -+.++++.+.+. |++++... +..+-+.+ .|+++-.-+ +...+.
T Consensus 1 ~~~l~a~d~dK~----~~~~~a~~~~~ll~Gf~i~AT~------------gTa~~L~~~~Gi~v~~vk~~~~~g~~~i~~ 64 (115)
T cd01422 1 RIALIAHDNKKE----DLVEFVKQHQELLSRHRLVATG------------TTGLLIQEATGLTVNRMKSGPLGGDQQIGA 64 (115)
T ss_pred CEeEEecccchH----HHHHHHHHHHHHhcCCEEEEec------------hHHHHHHHhhCCcEEEEecCCCCchhHHHH
Confidence 377889988753 566999999999 99987544 22345555 688664222 222232
Q ss_pred --hhhccCEEEEech
Q 022363 147 --TALKADLIVLNTA 159 (298)
Q Consensus 147 --~A~~aDLVIaNT~ 159 (298)
...++|+|| ||.
T Consensus 65 ~i~~g~i~~VI-nt~ 78 (115)
T cd01422 65 LIAEGEIDAVI-FFR 78 (115)
T ss_pred HHHcCceeEEE-EcC
Confidence 366899985 443
No 312
>PRK06031 phosphoribosyltransferase; Provisional
Probab=37.35 E-value=66 Score=30.02 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=28.5
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEE
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN 108 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~ 108 (298)
...+||+||+| .|.-.||+ -+.+.++.|+++|.+|+
T Consensus 150 ~~~~GkrVLIV-DDVitTG~--Tl~aa~~lL~~~Ga~Vv 185 (233)
T PRK06031 150 PLLEGRRVALI-DDVISSGA--SIVAGLRLLAACGIEPA 185 (233)
T ss_pred ccCCCCEEEEE-EeEccccH--HHHHHHHHHHHcCCeEE
Confidence 35799999888 56777788 56688899999998855
No 313
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=37.29 E-value=1.9e+02 Score=25.22 Aligned_cols=79 Identities=19% Similarity=0.218 Sum_probs=43.6
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--e--ehhchhHHH
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--I--SAKGQETIN 146 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v--~--~~k~~~~i~ 146 (298)
.+++|++|+.+ |+.-+=.++|+.|.+.|++|.++..... .. ..+.+++...+.++ + +-...++++
T Consensus 9 ~~~~k~ilItG------a~g~IG~~la~~l~~~G~~V~~~~r~~~----~~-~~~~~~i~~~~~~~~~~~~Dl~d~~~i~ 77 (259)
T PRK08213 9 DLSGKTALVTG------GSRGLGLQIAEALGEAGARVVLSARKAE----EL-EEAAAHLEALGIDALWIAADVADEADIE 77 (259)
T ss_pred CcCCCEEEEEC------CCchHHHHHHHHHHHcCCEEEEEeCCHH----HH-HHHHHHHHhcCCeEEEEEccCCCHHHHH
Confidence 35788777763 2233567899999999999866653321 11 12233343333322 2 112223332
Q ss_pred --------hhhccCEEEEechh
Q 022363 147 --------TALKADLIVLNTAV 160 (298)
Q Consensus 147 --------~A~~aDLVIaNT~v 160 (298)
....+|.||.|+..
T Consensus 78 ~~~~~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 78 RLAEETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHHHHHhCCCCEEEECCCC
Confidence 12468999999764
No 314
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=37.19 E-value=99 Score=30.19 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=49.8
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHh--------------CCCeEEEEeccCC---CCchhhhhhhHHHHHHcCCcee
Q 022363 75 KLVLLVSHELSLSGGPLLLMELAFLLRG--------------VGTKVNWITIQKP---SEEDEVIYSLEHKMWDRGVQVI 137 (298)
Q Consensus 75 KkILLISHELS~TGAPLlLleLA~~Lkq--------------~G~~V~vL~~~~G---~~~g~v~~~L~~kll~rgI~v~ 137 (298)
++|++|. |+| .=+|+|..|.+ .|.+|.++...+. ....++...+++.|.++||++.
T Consensus 174 ~~vvVvG------gG~-~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~ 246 (424)
T PTZ00318 174 LHFVVVG------GGP-TGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIR 246 (424)
T ss_pred CEEEEEC------CCH-HHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEE
Confidence 4788774 333 46777777764 4788998874322 1234555667888999999999
Q ss_pred ehhchhHHH---------hhhccCEEEEechh
Q 022363 138 SAKGQETIN---------TALKADLIVLNTAV 160 (298)
Q Consensus 138 ~~k~~~~i~---------~A~~aDLVIaNT~v 160 (298)
......++. ....+|+||.-+-+
T Consensus 247 ~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 247 TKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred eCCeEEEEeCCEEEECCCCEEEccEEEEccCC
Confidence 653322221 12367888876654
No 315
>PRK09134 short chain dehydrogenase; Provisional
Probab=37.19 E-value=2.3e+02 Score=24.86 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--e--ehhchhHHH----h----hhccCEEEEech
Q 022363 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--I--SAKGQETIN----T----ALKADLIVLNTA 159 (298)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v--~--~~k~~~~i~----~----A~~aDLVIaNT~ 159 (298)
+=.++++.|.+.|++|.++..+..+ . ...+.+++.+.+..+ + +-....++. . ....|.||.|..
T Consensus 21 iG~~la~~l~~~g~~v~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~iD~vi~~ag 96 (258)
T PRK09134 21 IGRAIALDLAAHGFDVAVHYNRSRD---E-AEALAAEIRALGRRAVALQADLADEAEVRALVARASAALGPITLLVNNAS 96 (258)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHH---H-HHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 4568899999999999877654321 1 112344554444332 2 112222232 1 235899999976
Q ss_pred h
Q 022363 160 V 160 (298)
Q Consensus 160 v 160 (298)
.
T Consensus 97 ~ 97 (258)
T PRK09134 97 L 97 (258)
T ss_pred C
Confidence 4
No 316
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=37.16 E-value=1.9e+02 Score=27.89 Aligned_cols=78 Identities=14% Similarity=0.088 Sum_probs=45.8
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhc
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~ 150 (298)
-.+|++|.+|.+ .++ +.-.++..|...|.+|++.+-.+-...+++ ++....+.|.++..... .-+.+.+
T Consensus 149 ~l~gl~i~~vGd-~~~-----v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~---~~~~~~~~g~~~~~~~d--~~~a~~~ 217 (304)
T PRK00779 149 SLKGLKVAWVGD-GNN-----VANSLLLAAALLGFDLRVATPKGYEPDPEI---VEKIAKETGASIEVTHD--PKEAVKG 217 (304)
T ss_pred CcCCcEEEEEeC-CCc-----cHHHHHHHHHHcCCEEEEECCcccCCCHHH---HHHHHHHcCCeEEEEcC--HHHHhCC
Confidence 478999999998 343 455666667777999999883321111222 12223445755532211 1125679
Q ss_pred cCEEEEech
Q 022363 151 ADLIVLNTA 159 (298)
Q Consensus 151 aDLVIaNT~ 159 (298)
+|.|+.-+.
T Consensus 218 aDvvy~~~w 226 (304)
T PRK00779 218 ADVVYTDVW 226 (304)
T ss_pred CCEEEecCc
Confidence 999998543
No 317
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=37.15 E-value=1e+02 Score=28.98 Aligned_cols=36 Identities=31% Similarity=0.338 Sum_probs=29.5
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEecc
Q 022363 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (298)
Q Consensus 76 kILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (298)
+|||++.- ..|-=.=++.+|+.|++.|++|.+.+..
T Consensus 2 rIl~~~~p--~~GHv~P~l~la~~L~~rGh~V~~~t~~ 37 (401)
T cd03784 2 RVLITTIG--SRGDVQPLVALAWALRAAGHEVRVATPP 37 (401)
T ss_pred eEEEEeCC--CcchHHHHHHHHHHHHHCCCeEEEeeCH
Confidence 68888875 3565556789999999999999999954
No 318
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=37.09 E-value=1.4e+02 Score=28.97 Aligned_cols=85 Identities=21% Similarity=0.220 Sum_probs=48.5
Q ss_pred EEEEec-cCCCCCchHHHHHHHHHHHhCCCeEEEEe-ccCCCCch----------hhhhhhHHHHHHc--CCceeehh-c
Q 022363 77 VLLVSH-ELSLSGGPLLLMELAFLLRGVGTKVNWIT-IQKPSEED----------EVIYSLEHKMWDR--GVQVISAK-G 141 (298)
Q Consensus 77 ILLISH-ELS~TGAPLlLleLA~~Lkq~G~~V~vL~-~~~G~~~g----------~v~~~L~~kll~r--gI~v~~~k-~ 141 (298)
|+-|.. -.+.||-==+...|+++|++.|..+.+++ +.||...+ .-..+=|..++.+ +++|+-.+ .
T Consensus 37 VIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~~~V~V~~dR 116 (326)
T PF02606_consen 37 VISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLARKLPVPVIVGPDR 116 (326)
T ss_pred EEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHHHhcCCcEEEeCcH
Confidence 444442 23456666677789999999999999999 66553221 1111334555555 34466442 2
Q ss_pred hhHHHh---hhccCEEEEechhc
Q 022363 142 QETINT---ALKADLIVLNTAVA 161 (298)
Q Consensus 142 ~~~i~~---A~~aDLVIaNT~v~ 161 (298)
.+..+. ...+|+||..=.--
T Consensus 117 ~~~~~~~~~~~~~dviilDDGfQ 139 (326)
T PF02606_consen 117 VAAARAALKEFPADVIILDDGFQ 139 (326)
T ss_pred HHHHHHHHHHCCCCEEEEcCCcc
Confidence 333332 22368877765543
No 319
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=37.03 E-value=2e+02 Score=23.64 Aligned_cols=79 Identities=14% Similarity=0.040 Sum_probs=56.1
Q ss_pred cCCCccccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchh
Q 022363 64 TKSSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE 143 (298)
Q Consensus 64 ~~~~~~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~ 143 (298)
-.|++.+|++|.-++|.|=-.=....|-.+.++.+.|.+.|..=..+-. |.+-+++-..+.+..-++++|++.-...-
T Consensus 32 e~~d~~~~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~--~~~~~~iP~~~i~~A~~~~lPli~ip~~~ 109 (123)
T PF07905_consen 32 EAPDPSDWLRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKT--GRYLDEIPEEIIELADELGLPLIEIPWEV 109 (123)
T ss_pred ecCCHHHhCCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEec--cCccccCCHHHHHHHHHcCCCEEEeCCCC
Confidence 3468999999998888763333333566899999999999887655542 32345666677888888899999765444
Q ss_pred H
Q 022363 144 T 144 (298)
Q Consensus 144 ~ 144 (298)
.
T Consensus 110 ~ 110 (123)
T PF07905_consen 110 P 110 (123)
T ss_pred C
Confidence 3
No 320
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=36.96 E-value=1.6e+02 Score=29.60 Aligned_cols=80 Identities=19% Similarity=0.137 Sum_probs=47.2
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHH-HHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCC-cee-ehhchhHH
Q 022363 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAF-LLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV-QVI-SAKGQETI 145 (298)
Q Consensus 69 ~~f~~~KkILLISHELS~TGAPLlLleLA~-~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI-~v~-~~k~~~~i 145 (298)
..+..||+|.+.. | |-.++.+++ ++++.|.+|+.+...-.. . ..+++.+.+..- +++ .+.....+
T Consensus 312 ~~~l~gkrvai~~------~-~~~~~~~~~~ll~elGm~v~~~~~~~~~-~----~~~~~~l~~l~~~~~~v~~~~~~e~ 379 (443)
T TIGR01862 312 KERLQGKRVCLYI------G-GSRLWHWIGSAEEDLGMEVVAVGYEFAH-E----DDYEKTMKRMGEGTLLIDDPNELEF 379 (443)
T ss_pred HHHhcCCeEEEEC------C-chhHHHHHHHHHHHCCCEEEEecccccc-H----HHHHHHHHhCCCceEEecCCCHHHH
Confidence 4677899998842 2 335557888 999999999888522110 1 123444444321 333 33333333
Q ss_pred H---hhhccCEEEEechh
Q 022363 146 N---TALKADLIVLNTAV 160 (298)
Q Consensus 146 ~---~A~~aDLVIaNT~v 160 (298)
. ...++||+|.|+-.
T Consensus 380 ~~~i~~~~pdllig~s~~ 397 (443)
T TIGR01862 380 EEILEKLKPDIIFSGIKE 397 (443)
T ss_pred HHHHHhcCCCEEEEcCcc
Confidence 2 34589999999953
No 321
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=36.93 E-value=55 Score=31.22 Aligned_cols=43 Identities=26% Similarity=0.340 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc-CCceeeh
Q 022363 90 PLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISA 139 (298)
Q Consensus 90 PLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~r-gI~v~~~ 139 (298)
.++.-+.++.+++.|+++.+|.|-+ ...|.+++.+. ||||++-
T Consensus 160 ~~l~~~~~~a~~edgAeaIiLGCAG-------ms~la~~Lq~~~gvPVIDg 203 (230)
T COG4126 160 ALLVIEAAEALKEDGAEAIILGCAG-------MSDLADQLQKAFGVPVIDG 203 (230)
T ss_pred HHHHHHHHHHhhhcCCCEEEEcCcc-------HHHHHHHHHHHhCCCcccc
Confidence 3566778899999999999999775 34677888777 9999865
No 322
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=36.93 E-value=1.1e+02 Score=31.80 Aligned_cols=59 Identities=25% Similarity=0.350 Sum_probs=41.5
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEE---eccCCCCchhhhhhhHHHHHHcCCceeeh
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWI---TIQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL---~~~~G~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
.|-+|++||+|= |.=.||+ .+++.++.|++.|.+|.-+ ..+.. +-.+++.+.|+++..-
T Consensus 389 ~~~~G~rVlIVD-DViTTGg--Si~eaie~l~~aG~~V~~v~vlVDR~~--------g~~~~L~~~gv~~~Sl 450 (477)
T PRK05500 389 NFHPGETVVVVD-DILITGK--SVMEGAEKLKSAGLNVRDIVVFIDHEQ--------GVKDKLQSHGYQAYSV 450 (477)
T ss_pred CCCCcCEEEEEE-eccccCH--HHHHHHHHHHHCCCEEEEEEEEEECCc--------chHHHHHhcCCCEEEE
Confidence 456899998885 5666777 6789999999999996533 33322 1245677778888755
No 323
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=36.92 E-value=86 Score=22.27 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=27.0
Q ss_pred cCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEE
Q 022363 238 GNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI 275 (298)
Q Consensus 238 ~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~ 275 (298)
+.+++.-+ .+.++ +-+.+.+.+|+|++++.|..
T Consensus 11 grt~eqK~----~l~~~-it~~l~~~lg~~~~~v~V~i 43 (63)
T TIGR00013 11 GRTDEQKR----QLIEG-VTEAMAETLGANLESIVVII 43 (63)
T ss_pred CCCHHHHH----HHHHH-HHHHHHHHhCCCcccEEEEE
Confidence 46677777 88888 88999999999999987654
No 324
>PRK12743 oxidoreductase; Provisional
Probab=36.66 E-value=1.8e+02 Score=25.48 Aligned_cols=77 Identities=12% Similarity=0.092 Sum_probs=42.6
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--ee-h-hchhHHH---
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--IS-A-KGQETIN--- 146 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v--~~-~-k~~~~i~--- 146 (298)
+|++|+.+ |..-+=.++++.|.+.|+.|.++..+..+ -...+.+++...|..+ +. | ....+++
T Consensus 2 ~k~vlItG------as~giG~~~a~~l~~~G~~V~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 71 (256)
T PRK12743 2 AQVAIVTA------SDSGIGKACALLLAQQGFDIGITWHSDEE----GAKETAEEVRSHGVRAEIRQLDLSDLPEGAQAL 71 (256)
T ss_pred CCEEEEEC------CCchHHHHHHHHHHHCCCEEEEEeCCChH----HHHHHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence 45565544 22236678999999999999877644321 1122344555444322 21 1 1122221
Q ss_pred -----hhhccCEEEEechh
Q 022363 147 -----TALKADLIVLNTAV 160 (298)
Q Consensus 147 -----~A~~aDLVIaNT~v 160 (298)
.....|.||.|...
T Consensus 72 ~~~~~~~~~id~li~~ag~ 90 (256)
T PRK12743 72 DKLIQRLGRIDVLVNNAGA 90 (256)
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 23468999999765
No 325
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=36.45 E-value=2.5e+02 Score=26.54 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=62.8
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc---CCceeeh--hchhHHH----
Q 022363 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR---GVQVISA--KGQETIN---- 146 (298)
Q Consensus 76 kILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~r---gI~v~~~--k~~~~i~---- 146 (298)
+|++|.-.=+..|.+.+-..||.+|.+.|.+|.++-.. + .+..+ ..+... .+.+... ...+.+.
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D-~--~n~~~----~~~~~l~~~~~~i~~~~~i~~r~fD~Lve 75 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTD-P--VNATF----EGYKALNVRRLNIMDGDEINTRNFDALVE 75 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECC-C--CCchh----hhHHhcCCcceecccCCccchhhHHHHHH
Confidence 57777778899999999999999999999998777432 2 12211 122222 2222211 1112222
Q ss_pred -h-hhccCEEEEechhchHHHHHHhhc-cCC-----CCCCceEEEeeeccccccc
Q 022363 147 -T-ALKADLIVLNTAVAGKWLDAVLKE-DVP-----RVLPNVLWWIHEMRGHYFK 193 (298)
Q Consensus 147 -~-A~~aDLVIaNT~v~g~wl~~l~~~-~~p-----~~~~pVIWWIHE~r~~Yf~ 193 (298)
. ..+-|+||-|++-+..-+.+|+.+ .++ .+-.=++||+-.--+.+.+
T Consensus 76 ~i~~~~~dvIIDngAs~~~~l~~yl~~n~l~~ll~e~g~~lvvh~vi~gg~~~~d 130 (241)
T PRK13886 76 MIASTEGDVIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVHTVVTGGQALLD 130 (241)
T ss_pred HHhccCCCEEEECCCcchHHHHHHHHhCcHHHHHHHCCceEEEEEEECCCcccHH
Confidence 1 245688998998665555444322 111 1122577778665443333
No 326
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=36.42 E-value=91 Score=28.23 Aligned_cols=39 Identities=10% Similarity=0.010 Sum_probs=31.0
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (298)
+|.-+++||+ +|.---+.++++..|+.|..+..+++.++
T Consensus 109 ~gDvli~iS~----SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~ 147 (196)
T PRK10886 109 AGDVLLAIST----RGNSRDIVKAVEAAVTRDMTIVALTGYDG 147 (196)
T ss_pred CCCEEEEEeC----CCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 3444555554 67777899999999999999999997765
No 327
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=36.34 E-value=1.4e+02 Score=29.52 Aligned_cols=58 Identities=26% Similarity=0.479 Sum_probs=41.7
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC---CCchhhhhhhHHHHHHcCCceeeh
Q 022363 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP---SEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 75 KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G---~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
|++++|. |++ .-+|+|..|++.|.+|.++..... ..+.++...+.+.+.++||.+...
T Consensus 171 ~~vvIIG------gG~-iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~ 231 (458)
T PRK06912 171 SSLLIVG------GGV-IGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTG 231 (458)
T ss_pred CcEEEEC------CCH-HHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEEC
Confidence 5566662 444 577999999999999998874321 133456667788888889998865
No 328
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=36.08 E-value=72 Score=27.98 Aligned_cols=33 Identities=33% Similarity=0.515 Sum_probs=26.8
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeE
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKV 107 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V 107 (298)
.+||+||+| .|.-.||+ -|.++++.|++.|.++
T Consensus 118 ~~gk~VLIV-DDiitTG~--Tl~aa~~~L~~~GA~~ 150 (178)
T PRK07322 118 LKGKRVAIV-DDVVSTGG--TLTALERLVERAGGQV 150 (178)
T ss_pred cCCCEEEEE-eccccccH--HHHHHHHHHHHcCCEE
Confidence 678887666 67778898 4579999999999883
No 329
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=35.76 E-value=2.4e+02 Score=27.72 Aligned_cols=82 Identities=13% Similarity=0.081 Sum_probs=47.7
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhc
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~ 150 (298)
-.+|++|.+|++--+ + +.-.++..+...|.+|.+.+-++-....+++...++...+.|..+...... -....+
T Consensus 152 ~l~g~~va~vGd~~~--~---v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~--~ea~~~ 224 (331)
T PRK02102 152 PLKGLKLAYVGDGRN--N---MANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDP--EEAVKG 224 (331)
T ss_pred CCCCCEEEEECCCcc--c---HHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCH--HHHhCC
Confidence 368999999985533 3 445555566777999999884332222333222223334457554321111 125679
Q ss_pred cCEEEEech
Q 022363 151 ADLIVLNTA 159 (298)
Q Consensus 151 aDLVIaNT~ 159 (298)
+|.|++.+.
T Consensus 225 aDvvyt~~w 233 (331)
T PRK02102 225 ADVIYTDVW 233 (331)
T ss_pred CCEEEEcCc
Confidence 999999754
No 330
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=35.74 E-value=3.7e+02 Score=25.14 Aligned_cols=110 Identities=11% Similarity=0.165 Sum_probs=61.0
Q ss_pred CCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhccCEEEEechhch---
Q 022363 86 LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAG--- 162 (298)
Q Consensus 86 ~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~aDLVIaNT~v~g--- 162 (298)
.+||+..-....+.+.+.|++..-+........ .. ......+. +.+.....=|.|+.-+-.-.
T Consensus 14 ~~a~~ka~~d~~~~~~~~g~~~~~~~~~~~~~~-~~-~~~~~~~~------------~~~~~~~~~Dvv~~~~P~~~~~~ 79 (333)
T PRK09814 14 NSAALKAKNDVTKIAKQLGFEELGIYFYNIKRD-SL-SERSKRLD------------GILASLKPGDIVIFQFPTWNGFE 79 (333)
T ss_pred cchHHHHHHHHHHHHHHCCCeEeEEEecccccc-hH-HHHHHHHH------------HHHhcCCCCCEEEEECCCCchHH
Confidence 348999999999999999999877764321100 00 00011111 11222333499998764322
Q ss_pred ---HHHHHHhhccCCCCCCceEEEeeeccccccc------------cccccccccccccccccHHHHHHHHHh
Q 022363 163 ---KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK------------LDYVKHLPLVAGAMIDSHVTAEYWKNR 220 (298)
Q Consensus 163 ---~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~------------l~~vkhLp~v~~~~~~S~AtA~yw~~r 220 (298)
..+..+.+.+ .|+|-++||..-..+. +++...+ ++.|+..+++.+++
T Consensus 80 ~~~~~~~~~k~~~-----~k~i~~ihD~~~~~~~~~~~~~~~~~~~~~~aD~i------I~~S~~~~~~l~~~ 141 (333)
T PRK09814 80 FDRLFVDKLKKKQ-----VKIIILIHDIEPLRFDSNYYLMKEEIDMLNLADVL------IVHSKKMKDRLVEE 141 (333)
T ss_pred HHHHHHHHHHHcC-----CEEEEEECCcHHHhccccchhhHHHHHHHHhCCEE------EECCHHHHHHHHHc
Confidence 2223332212 3999999997622111 2223334 44599999999765
No 331
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=35.73 E-value=2.1e+02 Score=24.65 Aligned_cols=80 Identities=15% Similarity=0.092 Sum_probs=43.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee----ehhchhHHH-
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI----SAKGQETIN- 146 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~----~~k~~~~i~- 146 (298)
|++|.+| |+- -|| -+=.++|+.|.+.|++|+++..+..+ .. ....+++.+.+..+. +....+.+.
T Consensus 1 ~~~k~~l-VtG---~s~--giG~~~a~~l~~~G~~vv~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 70 (246)
T PRK12938 1 MSQRIAY-VTG---GMG--GIGTSICQRLHKDGFKVVAGCGPNSP--RR--VKWLEDQKALGFDFIASEGNVGDWDSTKA 70 (246)
T ss_pred CCCCEEE-EEC---CCC--hHHHHHHHHHHHcCCEEEEEcCCChH--HH--HHHHHHHHhcCCcEEEEEcCCCCHHHHHH
Confidence 4566444 432 223 36678999999999998776643321 11 112334444454443 112222222
Q ss_pred -------hhhccCEEEEechhc
Q 022363 147 -------TALKADLIVLNTAVA 161 (298)
Q Consensus 147 -------~A~~aDLVIaNT~v~ 161 (298)
...+.|.||.|....
T Consensus 71 ~~~~~~~~~~~id~li~~ag~~ 92 (246)
T PRK12938 71 AFDKVKAEVGEIDVLVNNAGIT 92 (246)
T ss_pred HHHHHHHHhCCCCEEEECCCCC
Confidence 224789999887653
No 332
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=35.70 E-value=2.5e+02 Score=27.67 Aligned_cols=83 Identities=10% Similarity=-0.006 Sum_probs=48.8
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhcc
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~a 151 (298)
.+|++|.+|.+-.++ . .-.++..+...|.++.+.+-++=....+++...++...+.|..+...... -+...++
T Consensus 154 l~gl~va~vGD~~~~--v---~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~--~~a~~~a 226 (334)
T PRK12562 154 FNEMTLVYAGDARNN--M---GNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDI--AAGVKGA 226 (334)
T ss_pred cCCcEEEEECCCCCC--H---HHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCH--HHHhCCC
Confidence 578999999965443 3 33344445556999999884432223344333444445567554322111 1356799
Q ss_pred CEEEEechhc
Q 022363 152 DLIVLNTAVA 161 (298)
Q Consensus 152 DLVIaNT~v~ 161 (298)
|.|+..+.++
T Consensus 227 Dvvyt~~w~s 236 (334)
T PRK12562 227 DFIYTDVWVS 236 (334)
T ss_pred CEEEEcCccc
Confidence 9999998753
No 333
>PRK09620 hypothetical protein; Provisional
Probab=35.69 E-value=39 Score=31.09 Aligned_cols=20 Identities=20% Similarity=0.056 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCCeEEEEecc
Q 022363 94 MELAFLLRGVGTKVNWITIQ 113 (298)
Q Consensus 94 leLA~~Lkq~G~~V~vL~~~ 113 (298)
.++|+.|...|++|.++.+.
T Consensus 33 s~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 33 RIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHHCCCeEEEEeCC
Confidence 58999999999999999853
No 334
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=35.61 E-value=47 Score=30.47 Aligned_cols=39 Identities=23% Similarity=0.168 Sum_probs=29.4
Q ss_pred ccccEEEEEeccCCCCCchHH---HHHHHHHHHhCCCeEEEEeccCC
Q 022363 72 MKSKLVLLVSHELSLSGGPLL---LMELAFLLRGVGTKVNWITIQKP 115 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLl---LleLA~~Lkq~G~~V~vL~~~~G 115 (298)
++||+|++ ..||+-=. ..++++.|++.|++|.++..+.+
T Consensus 3 l~~k~Ill-----gVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA 44 (196)
T PRK08305 3 LKGKRIGF-----GLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTV 44 (196)
T ss_pred CCCCEEEE-----EEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhH
Confidence 47888875 45655433 46889999999999999997765
No 335
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=35.56 E-value=65 Score=25.02 Aligned_cols=38 Identities=26% Similarity=0.228 Sum_probs=29.5
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (298)
+-.++++|+. |.+--++++++.+++.|..++++++...
T Consensus 61 ~~~~i~iS~~----g~~~~~~~~~~~a~~~g~~iv~iT~~~~ 98 (139)
T cd05013 61 GDVVIAISFS----GETKETVEAAEIAKERGAKVIAITDSAN 98 (139)
T ss_pred CCEEEEEeCC----CCCHHHHHHHHHHHHcCCeEEEEcCCCC
Confidence 3457777764 4556789999999999999999997654
No 336
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=35.48 E-value=1.6e+02 Score=25.32 Aligned_cols=79 Identities=19% Similarity=0.223 Sum_probs=44.5
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--e--ehhchhHHH-
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--I--SAKGQETIN- 146 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v--~--~~k~~~~i~- 146 (298)
+++|++|+++ |..-+=.++|+.|.+.|.+|.++..+.++ .. ..+.+++.+.+.++ + +-....++.
T Consensus 4 ~~~~~~lItG------~s~~iG~~la~~l~~~g~~v~~~~~~~~~---~~-~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 73 (247)
T PRK12935 4 LNGKVAIVTG------GAKGIGKAITVALAQEGAKVVINYNSSKE---AA-ENLVNELGKEGHDVYAVQADVSKVEDANR 73 (247)
T ss_pred CCCCEEEEEC------CCCHHHHHHHHHHHHcCCEEEEEcCCcHH---HH-HHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence 4677777743 33447788999999999998766544321 11 12234444444333 2 112222222
Q ss_pred -------hhhccCEEEEechh
Q 022363 147 -------TALKADLIVLNTAV 160 (298)
Q Consensus 147 -------~A~~aDLVIaNT~v 160 (298)
.....|.||.|+..
T Consensus 74 ~~~~~~~~~~~id~vi~~ag~ 94 (247)
T PRK12935 74 LVEEAVNHFGKVDILVNNAGI 94 (247)
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 12458999998765
No 337
>PRK07060 short chain dehydrogenase; Provisional
Probab=35.44 E-value=2.6e+02 Score=23.90 Aligned_cols=34 Identities=24% Similarity=0.139 Sum_probs=24.1
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (298)
|++|++|+.. -+ --+=.++++.|.+.|++|.++.
T Consensus 7 ~~~~~~lItG----a~--g~iG~~~a~~l~~~g~~V~~~~ 40 (245)
T PRK07060 7 FSGKSVLVTG----AS--SGIGRACAVALAQRGARVVAAA 40 (245)
T ss_pred cCCCEEEEeC----Cc--chHHHHHHHHHHHCCCEEEEEe
Confidence 5778777642 22 3366788889999999977765
No 338
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=35.41 E-value=72 Score=28.56 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=30.2
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEE
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN 108 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~ 108 (298)
-.+||+||+| .|.=.||. -+.+..+.|++.|.+++
T Consensus 137 ~~~gk~VlIV-DDVitTG~--Tl~~ai~~l~~~Ga~~v 171 (200)
T PRK02277 137 SVEGKRCVIV-DDVITSGT--TMKETIEYLKEHGGKPV 171 (200)
T ss_pred cCCcCEEEEE-eeccCchH--HHHHHHHHHHHcCCEEE
Confidence 3689999999 88888898 78899999999998865
No 339
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=35.38 E-value=2.9e+02 Score=27.53 Aligned_cols=86 Identities=14% Similarity=0.022 Sum_probs=46.7
Q ss_pred ccccEEEEEec-cCCCC-CchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhh
Q 022363 72 MKSKLVLLVSH-ELSLS-GGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTAL 149 (298)
Q Consensus 72 ~~~KkILLISH-ELS~T-GAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~ 149 (298)
.+|++|.++.. +++.. +. -+.-.++..+...|.+|.+.+-++-....+++.-.++...+.|..+.... ..-+...
T Consensus 168 l~g~kvai~~~~d~~~gr~~-~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~--d~~ea~~ 244 (357)
T TIGR03316 168 LKGKKFAMTWAYSPSYGKPL-SVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVN--SMDEAFK 244 (357)
T ss_pred cCCCEEEEEeccccccCccc-hHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEc--CHHHHhC
Confidence 46889999874 33322 22 22334555556679999988844322223332222233345575543211 1113567
Q ss_pred ccCEEEEechh
Q 022363 150 KADLIVLNTAV 160 (298)
Q Consensus 150 ~aDLVIaNT~v 160 (298)
++|.|+..+-.
T Consensus 245 ~aDvvyt~~w~ 255 (357)
T TIGR03316 245 DADIVYPKSWA 255 (357)
T ss_pred CCCEEEECCee
Confidence 99999998754
No 340
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=35.35 E-value=79 Score=24.01 Aligned_cols=39 Identities=21% Similarity=0.061 Sum_probs=30.9
Q ss_pred HHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc
Q 022363 95 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG 141 (298)
Q Consensus 95 eLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~ 141 (298)
..+..|...|.++++..+-++ ...++|.++||.++....
T Consensus 52 ~~~~~l~~~~v~~vi~~~iG~--------~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 52 LAARLLALEGCDAVLVGGIGG--------PAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHHCCCcEEEEcccCc--------cHHHHHHHcCCEEEEcCC
Confidence 467788889999998886654 446899999999997654
No 341
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=35.33 E-value=88 Score=31.83 Aligned_cols=83 Identities=20% Similarity=0.259 Sum_probs=58.2
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc------hhHH
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------QETI 145 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~------~~~i 145 (298)
.+|.+|....|=.--|. .|+.-|+..|++|.|..++--+..+++ ..-+.+.||+|+.-++ ..-+
T Consensus 46 l~G~~i~~~~Hl~~~Ta------~l~~~L~~~GA~v~~~~~np~Stqd~v----aaaL~~~gi~v~a~~~~~~~ey~~~~ 115 (425)
T PRK05476 46 LKGARIAGCLHMTIQTA------VLIETLKALGAEVRWASCNPFSTQDDV----AAALAAAGIPVFAWKGETLEEYWECI 115 (425)
T ss_pred CCCCEEEEEEeccccHH------HHHHHHHHcCCEEEEEeCCCcccCHHH----HHHHHHCCceEEecCCCCHHHHHHHH
Confidence 57999999999776665 577889999999999997766677777 4445566999997543 2223
Q ss_pred Hh---hhccCEEEEechhchHH
Q 022363 146 NT---ALKADLIVLNTAVAGKW 164 (298)
Q Consensus 146 ~~---A~~aDLVIaNT~v~g~w 164 (298)
.. ..++|+|+=.-.-....
T Consensus 116 ~~~l~~~~p~iiiDdGgdl~~~ 137 (425)
T PRK05476 116 ERALDGHGPNMILDDGGDLTLL 137 (425)
T ss_pred HHHhcCCCCCEEEecccHHHHH
Confidence 32 24677777654433333
No 342
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=35.26 E-value=2e+02 Score=21.91 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=37.6
Q ss_pred cEEE-EEeccCCCCCchHHHHHHHHHHHhCC---CeEEEEeccCCC----C-------chhhhhhhHHHHHHcC-Cceee
Q 022363 75 KLVL-LVSHELSLSGGPLLLMELAFLLRGVG---TKVNWITIQKPS----E-------EDEVIYSLEHKMWDRG-VQVIS 138 (298)
Q Consensus 75 KkIL-LISHELS~TGAPLlLleLA~~Lkq~G---~~V~vL~~~~G~----~-------~g~v~~~L~~kll~rg-I~v~~ 138 (298)
|+|+ ++++.-+..-....-+.++......| .+|.++....|- . +..-...+.+++.+.| +++.-
T Consensus 1 k~v~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~gv~~~~~~~~~~~~~~~~~~~~l~~l~~~g~v~i~~ 80 (122)
T PF02635_consen 1 KKVFFIVTSGPYDDERAKIALRLANAAAAMGDYGHDVVVFFHGDGVKLALKDQKPNPEGDPPLQELLKELKEAGGVKIYV 80 (122)
T ss_dssp EEEEEEE-S-TTTBSHHHHHHHHHHHHHHTTHTTSEEEEEE-GGGGGGGBTTCHCGGCTSHCHHHHHHHHHHTTT-EEEE
T ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHHcCCCCCcEEEEEEchHHHHHHhcccccccccccHHHHHHHHHhcCCcEEEE
Confidence 3444 44545555555678888888999999 999988855443 1 1112234555666665 66664
Q ss_pred h
Q 022363 139 A 139 (298)
Q Consensus 139 ~ 139 (298)
-
T Consensus 81 C 81 (122)
T PF02635_consen 81 C 81 (122)
T ss_dssp E
T ss_pred c
Confidence 3
No 343
>PRK07831 short chain dehydrogenase; Provisional
Probab=35.25 E-value=2.3e+02 Score=24.83 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=27.4
Q ss_pred CCccccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 022363 66 SSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (298)
Q Consensus 66 ~~~~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (298)
+++..++++|++|++. -+|.. +=..+++.|.+.|+.|.+..
T Consensus 9 ~~~~~~~~~k~vlItG----~sg~g-IG~~ia~~l~~~G~~V~~~~ 49 (262)
T PRK07831 9 VPGHGLLAGKVVLVTA----AAGTG-IGSATARRALEEGARVVISD 49 (262)
T ss_pred CCcccccCCCEEEEEC----CCccc-HHHHHHHHHHHcCCEEEEEe
Confidence 3456788999877752 12211 34678888999999976654
No 344
>PRK13566 anthranilate synthase; Provisional
Probab=35.25 E-value=1.1e+02 Score=33.23 Aligned_cols=34 Identities=38% Similarity=0.445 Sum_probs=27.5
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (298)
+|++|++|-|+-+.. -.++++|++.|++|.++-.
T Consensus 525 ~g~~IlvID~~dsf~------~~l~~~Lr~~G~~v~vv~~ 558 (720)
T PRK13566 525 EGKRVLLVDHEDSFV------HTLANYFRQTGAEVTTVRY 558 (720)
T ss_pred CCCEEEEEECCCchH------HHHHHHHHHCCCEEEEEEC
Confidence 568999999996543 3788999999999887774
No 345
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=35.23 E-value=1.9e+02 Score=28.44 Aligned_cols=83 Identities=16% Similarity=0.124 Sum_probs=46.9
Q ss_pred EEEEec-cCCCCCchHHHHHHHHHHHhCCCeEEEEe-ccCCCCc---------hhhhhhhHHHHHHc--CCceeehhch-
Q 022363 77 VLLVSH-ELSLSGGPLLLMELAFLLRGVGTKVNWIT-IQKPSEE---------DEVIYSLEHKMWDR--GVQVISAKGQ- 142 (298)
Q Consensus 77 ILLISH-ELS~TGAPLlLleLA~~Lkq~G~~V~vL~-~~~G~~~---------g~v~~~L~~kll~r--gI~v~~~k~~- 142 (298)
|+-|.. -.+.||-==+...|+++|++.|..+.+++ +.||... +.-..+=|..++.+ +++|+-.+..
T Consensus 58 VIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~~~~~~~~v~~~~~~~~~GDEpllla~~~~~~V~V~~dR~ 137 (338)
T PRK01906 58 VVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYGAKIKHPTAVTPASRASDAGDEPLLIARRTDAPVWVCPDRV 137 (338)
T ss_pred EEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEecCCCCCCCCCeEEcCCCChhhhCcHHHHhhhcCCCeEEEeCcHH
Confidence 444442 23455665566789999999999999999 6654211 01111335556655 7888755322
Q ss_pred hHHHh----hhccCEEEEech
Q 022363 143 ETINT----ALKADLIVLNTA 159 (298)
Q Consensus 143 ~~i~~----A~~aDLVIaNT~ 159 (298)
+.... ..++|+||..=.
T Consensus 138 ~aa~~l~~~~~~~dviIlDDG 158 (338)
T PRK01906 138 AAAQALLAAHPGVDVIVSDDG 158 (338)
T ss_pred HHHHHHHHhCCCCCEEEECCC
Confidence 22321 124566665443
No 346
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=35.23 E-value=3.6e+02 Score=26.98 Aligned_cols=161 Identities=22% Similarity=0.327 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh---------------------chhHHH--
Q 022363 90 PLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK---------------------GQETIN-- 146 (298)
Q Consensus 90 PLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k---------------------~~~~i~-- 146 (298)
=+..-+|++.||+.+-++.+..-. | ++|.+.|...+-+- ..+..+
T Consensus 11 D~~ga~Li~~Lk~~~p~~~~~GvG-G-----------~~M~~~G~~~l~d~~~lsvmG~~Evl~~l~~~~~~~~~~~~~~ 78 (373)
T PF02684_consen 11 DLHGARLIRALKARDPDIEFYGVG-G-----------PRMQAAGVESLFDMEELSVMGFVEVLKKLPKLKRLFRKLVERI 78 (373)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEe-c-----------hHHHhCCCceecchHHhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 355668899999988777766633 4 36666776666441 011111
Q ss_pred hhhccCEEEE------echhchHHHHHHhhccCC--CC--CCceEEEeeeccccccccccccc----cccccccccccHH
Q 022363 147 TALKADLIVL------NTAVAGKWLDAVLKEDVP--RV--LPNVLWWIHEMRGHYFKLDYVKH----LPLVAGAMIDSHV 212 (298)
Q Consensus 147 ~A~~aDLVIa------NT~v~g~wl~~l~~~~~p--~~--~~pVIWWIHE~r~~Yf~l~~vkh----Lp~v~~~~~~S~A 212 (298)
...+.|.||. |-=+ ++.+++. ..+ -+ .+|-||-=..-|.+-. .++++| +|+-
T Consensus 79 ~~~~pd~vIlID~pgFNlrl-ak~lk~~---~~~~~viyYI~PqvWAWr~~R~~~i-~~~~D~ll~ifPFE--------- 144 (373)
T PF02684_consen 79 KEEKPDVVILIDYPGFNLRL-AKKLKKR---GIPIKVIYYISPQVWAWRPGRAKKI-KKYVDHLLVIFPFE--------- 144 (373)
T ss_pred HHcCCCEEEEeCCCCccHHH-HHHHHHh---CCCceEEEEECCceeeeCccHHHHH-HHHHhheeECCccc---------
Confidence 3569999986 3222 4444433 222 12 4577776566652222 234555 4444
Q ss_pred HHHHHHHhcccccccccCCceEEEecCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecccChhhHHHHHHhhh
Q 022363 213 TAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSMNFLLIRSCVANFL 292 (298)
Q Consensus 213 tA~yw~~r~~~~~~Ikl~~~~vv~L~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~sv~~~~~~~~~~~~~ 292 (298)
.+||+++ ++ | ++.+-++-+-. +.....++..|+.+ +++++-+++.+=.=-++.|+.+.--|+
T Consensus 145 -~~~y~~~-----g~--~----~~~VGHPl~d~-----~~~~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l 206 (373)
T PF02684_consen 145 -PEFYKKH-----GV--P----VTYVGHPLLDE-----VKPEPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFL 206 (373)
T ss_pred -HHHHhcc-----CC--C----eEEECCcchhh-----hccCCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 5565543 33 3 35555553333 33333456677788 999999999998777788888776665
Q ss_pred hc
Q 022363 293 TA 294 (298)
Q Consensus 293 ~~ 294 (298)
.+
T Consensus 207 ~a 208 (373)
T PF02684_consen 207 EA 208 (373)
T ss_pred HH
Confidence 44
No 347
>PRK06172 short chain dehydrogenase; Provisional
Probab=34.91 E-value=2.4e+02 Score=24.50 Aligned_cols=79 Identities=13% Similarity=0.125 Sum_probs=44.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--e--ehhchhHHH-
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--I--SAKGQETIN- 146 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v--~--~~k~~~~i~- 146 (298)
+++|++|+++ |..-+=.++++.|.+.|.+|.++..+ ++ .. ..+.+++.+.+..+ + +-....++.
T Consensus 5 l~~k~ilItG------as~~iG~~ia~~l~~~G~~v~~~~r~-~~---~~-~~~~~~~~~~~~~~~~~~~D~~~~~~i~~ 73 (253)
T PRK06172 5 FSGKVALVTG------GAAGIGRATALAFAREGAKVVVADRD-AA---GG-EETVALIREAGGEALFVACDVTRDAEVKA 73 (253)
T ss_pred CCCCEEEEeC------CCchHHHHHHHHHHHcCCEEEEEeCC-HH---HH-HHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 5688888876 22235567899999999997776533 21 11 12344444444222 2 111222222
Q ss_pred -------hhhccCEEEEechhc
Q 022363 147 -------TALKADLIVLNTAVA 161 (298)
Q Consensus 147 -------~A~~aDLVIaNT~v~ 161 (298)
....+|.||.|....
T Consensus 74 ~~~~~~~~~g~id~li~~ag~~ 95 (253)
T PRK06172 74 LVEQTIAAYGRLDYAFNNAGIE 95 (253)
T ss_pred HHHHHHHHhCCCCEEEECCCCC
Confidence 124679999988653
No 348
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=34.82 E-value=1.8e+02 Score=26.66 Aligned_cols=82 Identities=22% Similarity=0.225 Sum_probs=49.8
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhcc
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~a 151 (298)
++||+||+|+. |. +-..=++.|.++|..|.++..+- ..+ +.+-..+.++..+.+.+... ...++
T Consensus 10 l~~k~VlvvGg-----G~--va~rKa~~ll~~ga~v~Vvs~~~---~~e----l~~~~~~~~i~~~~~~~~~~--~~~~~ 73 (210)
T COG1648 10 LEGKKVLVVGG-----GS--VALRKARLLLKAGADVTVVSPEF---EPE----LKALIEEGKIKWIEREFDAE--DLDDA 73 (210)
T ss_pred cCCCEEEEECC-----CH--HHHHHHHHHHhcCCEEEEEcCCc---cHH----HHHHHHhcCcchhhcccChh--hhcCc
Confidence 57888999852 33 66677899999999999999332 122 24444444555554322221 23459
Q ss_pred CEEEEec---hhchHHHHHHh
Q 022363 152 DLIVLNT---AVAGKWLDAVL 169 (298)
Q Consensus 152 DLVIaNT---~v~g~wl~~l~ 169 (298)
++||+-| .++.+......
T Consensus 74 ~lviaAt~d~~ln~~i~~~a~ 94 (210)
T COG1648 74 FLVIAATDDEELNERIAKAAR 94 (210)
T ss_pred eEEEEeCCCHHHHHHHHHHHH
Confidence 9999876 44444444443
No 349
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=34.65 E-value=1.1e+02 Score=24.21 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=41.2
Q ss_pred EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh----hchhHHH---hhh
Q 022363 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA----KGQETIN---TAL 149 (298)
Q Consensus 77 ILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~----k~~~~i~---~A~ 149 (298)
+|+.-+|.+. =-++++++.|.+.|+++.... +..+-+.+.|+++-.- .+...+. ...
T Consensus 3 vl~s~~~~~k----~~~~~~~~~l~~~G~~l~aT~------------gT~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~ 66 (110)
T cd01424 3 VFISVADRDK----PEAVEIAKRLAELGFKLVATE------------GTAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNG 66 (110)
T ss_pred EEEEEEcCcH----hHHHHHHHHHHHCCCEEEEch------------HHHHHHHHcCCeEEEEeecCCCchhHHHHHHcC
Confidence 5555555433 257799999999999987543 2345566678885421 1122222 366
Q ss_pred ccCEEEEec
Q 022363 150 KADLIVLNT 158 (298)
Q Consensus 150 ~aDLVIaNT 158 (298)
++|+||...
T Consensus 67 ~id~vIn~~ 75 (110)
T cd01424 67 EIQLVINTP 75 (110)
T ss_pred CeEEEEECC
Confidence 999998753
No 350
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=34.64 E-value=53 Score=27.26 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=33.4
Q ss_pred HHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceee
Q 022363 93 LMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS 138 (298)
Q Consensus 93 LleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~ 138 (298)
.-+++..-++.+++.+++. | +..++.++.+.|.+.||++|=
T Consensus 51 ~~~l~~~a~~~~idlvvvG---P--E~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 51 PEELADFAKENKIDLVVVG---P--EAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp HHHHHHHHHHTTESEEEES---S--HHHHHTTHHHHHHHTT-CEES
T ss_pred HHHHHHHHHHcCCCEEEEC---C--hHHHHHHHHHHHHHCCCcEEC
Confidence 4467777889999998886 3 678889999999999999993
No 351
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=34.61 E-value=2.1e+02 Score=27.33 Aligned_cols=69 Identities=20% Similarity=0.311 Sum_probs=40.9
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHh--CCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh--h------chhH
Q 022363 75 KLVLLVSHELSLSGGPLLLMELAFLLRG--VGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA--K------GQET 144 (298)
Q Consensus 75 KkILLISHELS~TGAPLlLleLA~~Lkq--~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~--k------~~~~ 144 (298)
|-++|+|.+ |.- |-.|....++ .+++|.++.+++. .+.....+.|||++.- + ....
T Consensus 91 ri~vl~Sg~----gsn--l~al~~~~~~~~~~~~i~~visn~~--------~~~~lA~~~gIp~~~~~~~~~~~~~~~~~ 156 (286)
T PRK06027 91 RVVILVSKE----DHC--LGDLLWRWRSGELPVEIAAVISNHD--------DLRSLVERFGIPFHHVPVTKETKAEAEAR 156 (286)
T ss_pred EEEEEEcCC----CCC--HHHHHHHHHcCCCCcEEEEEEEcCh--------hHHHHHHHhCCCEEEeccCccccchhHHH
Confidence 788999988 432 2233333333 3688888876654 2344467779999851 1 1111
Q ss_pred -HH--hhhccCEEEEe
Q 022363 145 -IN--TALKADLIVLN 157 (298)
Q Consensus 145 -i~--~A~~aDLVIaN 157 (298)
.+ ...++|+|++-
T Consensus 157 ~~~~l~~~~~Dlivla 172 (286)
T PRK06027 157 LLELIDEYQPDLVVLA 172 (286)
T ss_pred HHHHHHHhCCCEEEEe
Confidence 12 24589999864
No 352
>PRK07814 short chain dehydrogenase; Provisional
Probab=34.44 E-value=2.1e+02 Score=25.26 Aligned_cols=78 Identities=14% Similarity=0.182 Sum_probs=44.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCc--ee--ehhchhHHH-
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ--VI--SAKGQETIN- 146 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~--v~--~~k~~~~i~- 146 (298)
+++|++|+++ -+| -+=.++++.|.+.|++|+++... ++ . ...+.+++.+.+.. .+ +-...+++.
T Consensus 8 ~~~~~vlItG----asg--gIG~~~a~~l~~~G~~Vi~~~r~-~~---~-~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 76 (263)
T PRK07814 8 LDDQVAVVTG----AGR--GLGAAIALAFAEAGADVLIAART-ES---Q-LDEVAEQIRAAGRRAHVVAADLAHPEATAG 76 (263)
T ss_pred CCCCEEEEEC----CCC--hHHHHHHHHHHHCCCEEEEEeCC-HH---H-HHHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence 5788877764 123 26668889999999998777643 21 1 12334445443332 22 112233222
Q ss_pred -------hhhccCEEEEechh
Q 022363 147 -------TALKADLIVLNTAV 160 (298)
Q Consensus 147 -------~A~~aDLVIaNT~v 160 (298)
...++|.||-|..+
T Consensus 77 ~~~~~~~~~~~id~vi~~Ag~ 97 (263)
T PRK07814 77 LAGQAVEAFGRLDIVVNNVGG 97 (263)
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 12478999988654
No 353
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=34.40 E-value=99 Score=30.63 Aligned_cols=62 Identities=13% Similarity=0.057 Sum_probs=42.1
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG 141 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~ 141 (298)
..||+|++|. +=..-+++|+.|...|.+|.++..+...+ -.......+++.+.||++.....
T Consensus 270 ~~gk~VvVIG-------gG~~a~d~A~~l~~~G~~Vtlv~~~~~~~-~~~~~~~~~~l~~~GV~~~~~~~ 331 (449)
T TIGR01316 270 YAGKSVVVIG-------GGNTAVDSARTALRLGAEVHCLYRRTRED-MTARVEEIAHAEEEGVKFHFLCQ 331 (449)
T ss_pred cCCCeEEEEC-------CCHHHHHHHHHHHHcCCEEEEEeecCccc-CCCCHHHHHHHHhCCCEEEeccC
Confidence 3678888884 33578999999999999999888543221 11112234667788999875533
No 354
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=34.39 E-value=59 Score=32.14 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=20.5
Q ss_pred hhHHHHHHcCCceeehhchhHHHhhhccCEEEEec
Q 022363 124 SLEHKMWDRGVQVISAKGQETINTALKADLIVLNT 158 (298)
Q Consensus 124 ~L~~kll~rgI~v~~~k~~~~i~~A~~aDLVIaNT 158 (298)
.+.+.|.++|..+..+ ...+|+||+||
T Consensus 18 ~~~~~l~~~g~~~~~~--------~~~aD~viinT 44 (430)
T TIGR01125 18 VMLGILREAGYEVTPN--------YEDADYVIVNT 44 (430)
T ss_pred HHHHHHHHCcCEECCC--------cccCCEEEEeC
Confidence 4677777788776665 45799999997
No 355
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=34.36 E-value=45 Score=26.69 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=5.2
Q ss_pred hhHHHHHHcCCce
Q 022363 124 SLEHKMWDRGVQV 136 (298)
Q Consensus 124 ~L~~kll~rgI~v 136 (298)
++.+++.++|.+|
T Consensus 110 ~~v~~l~~~g~~V 122 (146)
T PF01936_consen 110 PLVRKLRERGKRV 122 (146)
T ss_dssp HHHHHHHHH--EE
T ss_pred HHHHHHHHcCCEE
Confidence 4445555555433
No 356
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=34.35 E-value=1.3e+02 Score=30.25 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=39.7
Q ss_pred CchHHHHHHHHHHHhCCCeEEEEeccC--CCCchhhhhhhHHHHHHcCCceeeh
Q 022363 88 GGPLLLMELAFLLRGVGTKVNWITIQK--PSEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 88 GAPLlLleLA~~Lkq~G~~V~vL~~~~--G~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
|+-..-+|+|..|.+.|.+|.++.... +..+.++...+.+.|.++||.+...
T Consensus 187 GgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~ 240 (484)
T TIGR01438 187 GASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQ 240 (484)
T ss_pred CCCHHHHHHHHHHHHhCCcEEEEEecccccccCHHHHHHHHHHHHHcCCEEEeC
Confidence 555678999999999999999997421 1244566667788888889988754
No 357
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.33 E-value=2.9e+02 Score=24.58 Aligned_cols=35 Identities=14% Similarity=-0.015 Sum_probs=19.2
Q ss_pred EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 022363 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (298)
Q Consensus 77 ILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (298)
|-+|.++.+..--.-++-.+.+.+++.|+++..+.
T Consensus 2 i~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~ 36 (294)
T cd06316 2 AAIVMHTSGSDWSNAQVRGAKDEFAKLGIEVVATT 36 (294)
T ss_pred eEEEecCCCChHHHHHHHHHHHHHHHcCCEEEEec
Confidence 45555554422112244455677888888876543
No 358
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=34.07 E-value=2.3e+02 Score=27.79 Aligned_cols=81 Identities=9% Similarity=0.053 Sum_probs=45.4
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhcc
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~a 151 (298)
.+|++|.+|++-.+. +.-.++..+...|.+|.+.+-++=...++++.-.++...+.|..+..... --+...++
T Consensus 154 l~gl~ia~vGD~~~~-----v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d--~~~a~~~a 226 (334)
T PRK01713 154 LSEISYVYIGDARNN-----MGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDD--IDKAVKGV 226 (334)
T ss_pred cCCcEEEEECCCccC-----HHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcC--HHHHhCCC
Confidence 679999999964342 23344444555699999887332112233332233333445755432211 11356799
Q ss_pred CEEEEech
Q 022363 152 DLIVLNTA 159 (298)
Q Consensus 152 DLVIaNT~ 159 (298)
|.|+..+.
T Consensus 227 DvVyt~~w 234 (334)
T PRK01713 227 DFVHTDVW 234 (334)
T ss_pred CEEEEcce
Confidence 99999754
No 359
>PRK00208 thiG thiazole synthase; Reviewed
Probab=34.05 E-value=2e+02 Score=27.71 Aligned_cols=86 Identities=23% Similarity=0.188 Sum_probs=57.3
Q ss_pred EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC----------------------CchhhhhhhHHHHHHc-C
Q 022363 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS----------------------EEDEVIYSLEHKMWDR-G 133 (298)
Q Consensus 77 ILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~----------------------~~g~v~~~L~~kll~r-g 133 (298)
+=+|.++-++---+.-.++.++.|.+.|++|.-.+..+.. ..|...+.+.+.+.+. +
T Consensus 96 lEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~ 175 (250)
T PRK00208 96 LEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQAD 175 (250)
T ss_pred EEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcC
Confidence 4567888888899999999999999999998844433322 1222223345555553 7
Q ss_pred CceeehhchhHHH-----hhhccCEEEEechhch
Q 022363 134 VQVISAKGQETIN-----TALKADLIVLNTAVAG 162 (298)
Q Consensus 134 I~v~~~k~~~~i~-----~A~~aDLVIaNT~v~g 162 (298)
++|+-+=+..+=+ ....+|-|++||++.-
T Consensus 176 vpVIveaGI~tpeda~~AmelGAdgVlV~SAItk 209 (250)
T PRK00208 176 VPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAV 209 (250)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhC
Confidence 8888663332211 4579999999999863
No 360
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=33.94 E-value=2.3e+02 Score=28.18 Aligned_cols=80 Identities=14% Similarity=0.127 Sum_probs=45.4
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHH-hCCCeEEEEeccCCCCchhhhhhhHHHHHHcC--CceeehhchhHHH---
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLR-GVGTKVNWITIQKPSEEDEVIYSLEHKMWDRG--VQVISAKGQETIN--- 146 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lk-q~G~~V~vL~~~~G~~~g~v~~~L~~kll~rg--I~v~~~k~~~~i~--- 146 (298)
.||++.++ |.|-.+..+++.|. +.|.++.++...++. ..+.-..+.+.+...| ..++.......+.
T Consensus 292 ~~k~vai~-------~~~~~~~~l~~~L~~elGm~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~D~~~~~~~i 363 (427)
T cd01971 292 LPRRFAVI-------ADSTYALGLARFLVNELGWVPAKQVITDNP-PEKYRSAIENEFEAEGVSAEVVFSEDGYAIGQSL 363 (427)
T ss_pred CCceEEEE-------CChHHHHHHHHHHHHhcCCceEEEEecCCC-CHHHHHHHHHHHHhcCCCCcEEEecCHHHHHHHH
Confidence 37888765 56779999999995 899999887644432 1222122333332222 2222221122232
Q ss_pred hhh----ccCEEEEechh
Q 022363 147 TAL----KADLIVLNTAV 160 (298)
Q Consensus 147 ~A~----~aDLVIaNT~v 160 (298)
... ++|+||.|+-.
T Consensus 364 ~~~~~~~~~dliig~s~~ 381 (427)
T cd01971 364 RQSDFKYKPPIIFGSSWE 381 (427)
T ss_pred HhCCCCCCCCEEEechHH
Confidence 122 49999999973
No 361
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=33.77 E-value=2.9e+02 Score=28.05 Aligned_cols=102 Identities=20% Similarity=0.228 Sum_probs=56.5
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHH-hCCCeEEEEeccCCCCchhhhhhhHHHHHHcCC--ce-eehhchhHH
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLR-GVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV--QV-ISAKGQETI 145 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~Lk-q~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI--~v-~~~k~~~~i 145 (298)
.+.+||++.+. +|.| .+..+++.|. +.|.+++.+....+. .++ .++++..+. .+ +.+.....+
T Consensus 323 ~~L~GkrvaI~------~~~~-~~~~~~~~l~~ElGmevv~~~~~~~~-~~~-----~~~~~~~~~~~~i~i~d~~~~e~ 389 (461)
T TIGR01860 323 ERLQGKKMCIW------TGGP-RLWHWTKALEDDLGMQVVAMSSKFGH-QED-----FEKVIARGKEGTIYIDDGNELEF 389 (461)
T ss_pred HHcCCCEEEEE------CCCc-hHHHHHHHHHHhCCCEEEEEeeecCC-HHH-----HHHHHHhcCCCeEEEeCCCHHHH
Confidence 56899999883 3444 3466777887 799999887644321 111 233333322 23 333322222
Q ss_pred -H--hhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc
Q 022363 146 -N--TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK 193 (298)
Q Consensus 146 -~--~A~~aDLVIaNT~v~g~wl~~l~~~~~p~~~~pVIWWIHE~r~~Yf~ 193 (298)
+ ...++|++|.|+-. +++. .|.++ |.+-..++-.+-|..
T Consensus 390 ~~~~~~~~pDliig~s~~--~~~A--~klgi-----P~vd~~~~~~~~~~G 431 (461)
T TIGR01860 390 FEVLDLIKPDVIFTGPRV--GELV--KKLHI-----PYVNGHGYHNGPYMG 431 (461)
T ss_pred HHHHHhcCCCEEEeCCcc--hhhH--hhcCC-----CEEecccccccCccc
Confidence 2 35689999999853 3332 12244 666555555455544
No 362
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=33.75 E-value=2.4e+02 Score=29.51 Aligned_cols=81 Identities=15% Similarity=0.172 Sum_probs=51.1
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC------------CchhhhhhhHHHHHHcCCceeehh
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS------------EEDEVIYSLEHKMWDRGVQVISAK 140 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~------------~~g~v~~~L~~kll~rgI~v~~~k 140 (298)
.||+|++|. |+| .=+..|..|++.|++|.++-...-. ...++.....+.+.+.|+.+....
T Consensus 309 ~~kkVaIIG------~Gp-aGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 381 (639)
T PRK12809 309 RSEKVAVIG------AGP-AGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNC 381 (639)
T ss_pred CCCEEEEEC------cCH-HHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCC
Confidence 599999984 444 4556888899999998887533210 112232334566777798877553
Q ss_pred c---hhHHH-hhhccCEEEEechh
Q 022363 141 G---QETIN-TALKADLIVLNTAV 160 (298)
Q Consensus 141 ~---~~~i~-~A~~aDLVIaNT~v 160 (298)
. ..++. ....||.||..|-+
T Consensus 382 ~v~~~~~~~~l~~~~DaV~latGa 405 (639)
T PRK12809 382 EIGRDITFSDLTSEYDAVFIGVGT 405 (639)
T ss_pred ccCCcCCHHHHHhcCCEEEEeCCC
Confidence 1 11232 34579999998864
No 363
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=33.53 E-value=2.3e+02 Score=24.73 Aligned_cols=78 Identities=17% Similarity=0.250 Sum_probs=43.3
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee----ehhchhHHH-
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI----SAKGQETIN- 146 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~----~~k~~~~i~- 146 (298)
+++|+||+..- +|+ +=.++++.|.+.|++|+++. +.. ... ..+.+++.+.|.++. +....++++
T Consensus 8 ~~~k~vlItGa----~g~--iG~~ia~~l~~~G~~V~~~~-r~~---~~~-~~~~~~i~~~~~~~~~~~~D~~~~~~~~~ 76 (255)
T PRK07523 8 LTGRRALVTGS----SQG--IGYALAEGLAQAGAEVILNG-RDP---AKL-AAAAESLKGQGLSAHALAFDVTDHDAVRA 76 (255)
T ss_pred CCCCEEEEECC----cch--HHHHHHHHHHHcCCEEEEEe-CCH---HHH-HHHHHHHHhcCceEEEEEccCCCHHHHHH
Confidence 36888777652 222 55688888999999987654 322 111 123445554443332 112222232
Q ss_pred -------hhhccCEEEEechh
Q 022363 147 -------TALKADLIVLNTAV 160 (298)
Q Consensus 147 -------~A~~aDLVIaNT~v 160 (298)
.....|.||.|...
T Consensus 77 ~~~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 77 AIDAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHHHHhcCCCCEEEECCCC
Confidence 12468999988764
No 364
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=33.26 E-value=26 Score=36.16 Aligned_cols=26 Identities=15% Similarity=0.369 Sum_probs=16.4
Q ss_pred HHHHhCCCCCCEEEEEecc---cChhhHH
Q 022363 260 VRESLGVRNEDLLFAIINS---MNFLLIR 285 (298)
Q Consensus 260 VR~~lGl~~ddvlv~~~~s---v~~~~~~ 285 (298)
-|.++|||+|+++||..|+ |+|.-++
T Consensus 275 ~R~~~gLp~d~vvF~~fn~~~KI~p~~l~ 303 (468)
T PF13844_consen 275 TRAQYGLPEDAVVFGSFNNLFKISPETLD 303 (468)
T ss_dssp ETGGGT--SSSEEEEE-S-GGG--HHHHH
T ss_pred CHHHcCCCCCceEEEecCccccCCHHHHH
Confidence 4899999999999999997 4555443
No 365
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=33.23 E-value=2.4e+02 Score=25.88 Aligned_cols=62 Identities=13% Similarity=0.237 Sum_probs=35.2
Q ss_pred CccccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC-CCchhhhhhhHHHHHHcCCcee
Q 022363 67 SPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP-SEEDEVIYSLEHKMWDRGVQVI 137 (298)
Q Consensus 67 ~~~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G-~~~g~v~~~L~~kll~rgI~v~ 137 (298)
+..+|++...+ +++|.-|.+ +.+.....++.|-.+.+...... ..+| .-+.+++.+.|+++.
T Consensus 100 ~~~~~I~~~~~-ILT~~~S~~-----v~~~l~~a~~~~~~~~V~v~es~P~~eG---~~~a~~L~~~gi~v~ 162 (282)
T PF01008_consen 100 HASELINDGDT-ILTHGYSST-----VERFLLSAKKKGKKFRVIVLESRPYNEG---RLMAKELAEAGIPVT 162 (282)
T ss_dssp HHHCCC-TTEE-EEEES--SH-----HHHHHHHHHHTTEEEEEEEE--TTTTHH---HTHHHHHHHTT-EEE
T ss_pred HHHHhccCCeE-EEEeCCchH-----HHHHHHHHHHcCCeEEEEEccCCcchhh---hhHHHHhhhcceeEE
Confidence 45667765543 445655554 45555567777877766664333 3344 246788888999886
No 366
>PRK08862 short chain dehydrogenase; Provisional
Probab=33.21 E-value=2.4e+02 Score=24.90 Aligned_cols=77 Identities=19% Similarity=0.197 Sum_probs=42.3
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee----ehhchhHHH-
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI----SAKGQETIN- 146 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~----~~k~~~~i~- 146 (298)
++||.+|+..- ..=+=.++|+.|.+.|+.|.+.. +.. +.. ..+.+++.+.|.++. +....++++
T Consensus 3 ~~~k~~lVtGa------s~GIG~aia~~la~~G~~V~~~~-r~~---~~l-~~~~~~i~~~~~~~~~~~~D~~~~~~~~~ 71 (227)
T PRK08862 3 IKSSIILITSA------GSVLGRTISCHFARLGATLILCD-QDQ---SAL-KDTYEQCSALTDNVYSFQLKDFSQESIRH 71 (227)
T ss_pred CCCeEEEEECC------ccHHHHHHHHHHHHCCCEEEEEc-CCH---HHH-HHHHHHHHhcCCCeEEEEccCCCHHHHHH
Confidence 46777776542 22245678999999999987764 322 111 122344444443332 222233332
Q ss_pred -------hhh-ccCEEEEech
Q 022363 147 -------TAL-KADLIVLNTA 159 (298)
Q Consensus 147 -------~A~-~aDLVIaNT~ 159 (298)
... .+|.+|.|..
T Consensus 72 ~~~~~~~~~g~~iD~li~nag 92 (227)
T PRK08862 72 LFDAIEQQFNRAPDVLVNNWT 92 (227)
T ss_pred HHHHHHHHhCCCCCEEEECCc
Confidence 234 7999888874
No 367
>PRK08628 short chain dehydrogenase; Provisional
Probab=33.21 E-value=2.4e+02 Score=24.53 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=44.4
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--e--ehhchhHHH-
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--I--SAKGQETIN- 146 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v--~--~~k~~~~i~- 146 (298)
|+||++|++. -+|+ +=.++|+.|.+.|+.|.++... .+ . . .+.+++...+-++ + +-...+++.
T Consensus 5 l~~~~ilItG----asgg--iG~~la~~l~~~G~~v~~~~r~-~~--~-~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 72 (258)
T PRK08628 5 LKDKVVIVTG----GASG--IGAAISLRLAEEGAIPVIFGRS-AP--D-D--EFAEELRALQPRAEFVQVDLTDDAQCRD 72 (258)
T ss_pred cCCCEEEEeC----CCCh--HHHHHHHHHHHcCCcEEEEcCC-hh--h-H--HHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence 6788777754 2333 6678999999999998777533 21 1 1 3345554444332 2 112222222
Q ss_pred -------hhhccCEEEEechh
Q 022363 147 -------TALKADLIVLNTAV 160 (298)
Q Consensus 147 -------~A~~aDLVIaNT~v 160 (298)
....+|.||.|...
T Consensus 73 ~~~~~~~~~~~id~vi~~ag~ 93 (258)
T PRK08628 73 AVEQTVAKFGRIDGLVNNAGV 93 (258)
T ss_pred HHHHHHHhcCCCCEEEECCcc
Confidence 12368999988764
No 368
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=33.19 E-value=1.1e+02 Score=22.18 Aligned_cols=38 Identities=26% Similarity=0.279 Sum_probs=29.2
Q ss_pred cCcHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEEecccCh
Q 022363 238 GNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSMNF 281 (298)
Q Consensus 238 ~~s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~~~sv~~ 281 (298)
+.++|.-+ .+.+. +-+.+.+.+|+|++.+-|. |+=+.+
T Consensus 11 Grs~EqK~----~L~~~-it~a~~~~~~~p~~~v~V~-i~ev~~ 48 (60)
T PRK02289 11 GRSQEQKN----ALARE-VTEVVSRIAKAPKEAIHVF-INDMPE 48 (60)
T ss_pred CCCHHHHH----HHHHH-HHHHHHHHhCcCcceEEEE-EEEeCh
Confidence 67888877 88888 8888999999998877664 344443
No 369
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=33.08 E-value=3.1e+02 Score=23.37 Aligned_cols=99 Identities=22% Similarity=0.176 Sum_probs=53.3
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCc--ee-ehhchhHHHhhhc
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ--VI-SAKGQETINTALK 150 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~--v~-~~k~~~~i~~A~~ 150 (298)
.+.+++++.-. ..-++-.++++++.|++.+-++.++...+|++... +++.+.+.+.+ +. .....+..+...+
T Consensus 178 ~~~i~~~g~~~-~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~----~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 252 (348)
T cd03820 178 SKRILAVGRLV-PQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPEREA----LEALIKELGLEDRVILLGFTKNIEEYYAK 252 (348)
T ss_pred CcEEEEEEeec-cccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCHHH----HHHHHHHcCCCCeEEEcCCcchHHHHHHh
Confidence 45677777633 34445567789988887665655555333332222 23444444442 22 1122333346778
Q ss_pred cCEEEEechhc---hHHHHHHhhccCCCCCCceEEE
Q 022363 151 ADLIVLNTAVA---GKWLDAVLKEDVPRVLPNVLWW 183 (298)
Q Consensus 151 aDLVIaNT~v~---g~wl~~l~~~~~p~~~~pVIWW 183 (298)
+|+++..+... .+.++.+ ..+. |||..
T Consensus 253 ad~~i~ps~~e~~~~~~~Ea~-----a~G~-Pvi~~ 282 (348)
T cd03820 253 ASIFVLTSRFEGFPMVLLEAM-----AFGL-PVISF 282 (348)
T ss_pred CCEEEeCccccccCHHHHHHH-----HcCC-CEEEe
Confidence 99999876542 3444444 2334 66654
No 370
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=32.98 E-value=2.5e+02 Score=23.92 Aligned_cols=78 Identities=13% Similarity=0.177 Sum_probs=43.6
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCc--eee-h-hchhHHH-
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ--VIS-A-KGQETIN- 146 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~--v~~-~-k~~~~i~- 146 (298)
+++|+||+... .-.+=.++++.|.+.|++|.++..... .. ..+.+++...+.. .+. | ....++.
T Consensus 4 ~~~~~ilItGa------sg~iG~~l~~~l~~~g~~V~~~~r~~~----~~-~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~ 72 (251)
T PRK12826 4 LEGRVALVTGA------ARGIGRAIAVRLAADGAEVIVVDICGD----DA-AATAELVEAAGGKARARQVDVRDRAALKA 72 (251)
T ss_pred CCCCEEEEcCC------CCcHHHHHHHHHHHCCCEEEEEeCCHH----HH-HHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence 56788877542 223567888999999999877763321 11 1334445444432 221 1 1122222
Q ss_pred -------hhhccCEEEEechh
Q 022363 147 -------TALKADLIVLNTAV 160 (298)
Q Consensus 147 -------~A~~aDLVIaNT~v 160 (298)
...++|.||.|+..
T Consensus 73 ~~~~~~~~~~~~d~vi~~ag~ 93 (251)
T PRK12826 73 AVAAGVEDFGRLDILVANAGI 93 (251)
T ss_pred HHHHHHHHhCCCCEEEECCCC
Confidence 22478999998754
No 371
>PRK09526 lacI lac repressor; Reviewed
Probab=32.89 E-value=3.8e+02 Score=24.35 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=26.9
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (298)
+++.|-+|..+++..--.-++-.+-..+++.|+++.+...
T Consensus 62 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~i~~~ 101 (342)
T PRK09526 62 QSLTIGLATTSLALHAPSQIAAAIKSRADQLGYSVVISMV 101 (342)
T ss_pred CCceEEEEeCCCCcccHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4567888876654333334556677888899999887653
No 372
>KOG4584 consensus Uncharacterized conserved protein [General function prediction only]
Probab=32.88 E-value=1.4e+02 Score=30.00 Aligned_cols=55 Identities=22% Similarity=0.097 Sum_probs=36.3
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHH
Q 022363 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD 131 (298)
Q Consensus 76 kILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~ 131 (298)
|..+|+||-|..---|=++-+++.|...|.+|.+..+..|. =+++++.....++.
T Consensus 200 K~~lif~DNSG~DvILGilPf~Rellr~gt~vil~ans~pa-lNdvt~~el~~l~~ 254 (348)
T KOG4584|consen 200 KCALIFVDNSGFDVILGILPFARELLRRGTEVILCANSSPA-LNDVTYSELKELAA 254 (348)
T ss_pred ceEEEEecCCCcceeeeecHHHHHHHhCCCeEEEEecCcch-hccccHHHHHHHHH
Confidence 46788887554433333577889999999999999877654 34444544444443
No 373
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=32.87 E-value=82 Score=26.03 Aligned_cols=36 Identities=28% Similarity=0.253 Sum_probs=29.1
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 022363 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (298)
Q Consensus 75 KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (298)
+.-++|+||. |..+|.+.--++.-|+++|.+|..+.
T Consensus 40 ~~~VvVg~D~-R~~s~~~~~~~~~~l~~~G~~V~~~g 75 (137)
T PF02878_consen 40 GSRVVVGRDT-RPSSPMLAKALAAGLRANGVDVIDIG 75 (137)
T ss_dssp SSEEEEEE-S-STTHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CCeEEEEEcc-cCCHHHHHHHHHHHHhhccccccccc
Confidence 5678999995 55667788889999999999999876
No 374
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=32.83 E-value=1e+02 Score=23.21 Aligned_cols=56 Identities=25% Similarity=0.340 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhCC---CeEEEEeccCCCCchhhhhhhHHHH-HHcCCceeehhchhHHHhhhccCEEEEec
Q 022363 92 LLMELAFLLRGVG---TKVNWITIQKPSEEDEVIYSLEHKM-WDRGVQVISAKGQETINTALKADLIVLNT 158 (298)
Q Consensus 92 lLleLA~~Lkq~G---~~V~vL~~~~G~~~g~v~~~L~~kl-l~rgI~v~~~k~~~~i~~A~~aDLVIaNT 158 (298)
+=..|++-|.+.| .++.+.+.+.++ . .+++ .+.++.+......+ .+.++|.||..+
T Consensus 10 mg~al~~~l~~~g~~~~~v~~~~~r~~~-------~-~~~~~~~~~~~~~~~~~~~---~~~~advvilav 69 (96)
T PF03807_consen 10 MGSALARGLLASGIKPHEVIIVSSRSPE-------K-AAELAKEYGVQATADDNEE---AAQEADVVILAV 69 (96)
T ss_dssp HHHHHHHHHHHTTS-GGEEEEEEESSHH-------H-HHHHHHHCTTEEESEEHHH---HHHHTSEEEE-S
T ss_pred HHHHHHHHHHHCCCCceeEEeeccCcHH-------H-HHHHHHhhccccccCChHH---hhccCCEEEEEE
Confidence 4456788899999 999988656541 1 2333 33366666643333 456899999865
No 375
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=32.77 E-value=1.1e+02 Score=31.76 Aligned_cols=84 Identities=23% Similarity=0.202 Sum_probs=57.1
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcC-Cceeehh------chhH
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRG-VQVISAK------GQET 144 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rg-I~v~~~k------~~~~ 144 (298)
.+|.+|..--|=---|+ -|++-|+..|++|.|-.++-.+..|++... +.+.| |+|+--+ |...
T Consensus 43 l~G~ri~~~lh~~~~Ta------~l~~tL~~~GA~v~~~~~n~~stqD~~aaa----l~~~g~i~vfa~~g~t~eey~~~ 112 (476)
T PTZ00075 43 LKGARITGCLHMTVQTA------VLIETLKALGAEVRWCSCNIFSTQDHAAAA----IAKAGSVPVFAWKGETLEEYWWC 112 (476)
T ss_pred CCCCEEEEEEcchHHHH------HHHHHHHHcCCEEEEEcCCCCccccHHHHH----HHhcCCeEEEEecCCCHHHHHHH
Confidence 47888888888443333 466789999999999998777777888444 44568 9999433 3333
Q ss_pred HHhhh------ccCEEEEechhchHHH
Q 022363 145 INTAL------KADLIVLNTAVAGKWL 165 (298)
Q Consensus 145 i~~A~------~aDLVIaNT~v~g~wl 165 (298)
+..+. ++|+|+=+-.-....+
T Consensus 113 ~~~~l~~~~~~~p~~i~DdG~dl~~~~ 139 (476)
T PTZ00075 113 TEQALKWPNGDGPNLIVDDGGDATLLV 139 (476)
T ss_pred HHHHHhccCCCCCCEEEECCcHHHHHH
Confidence 43332 6899988766544433
No 376
>PLN02891 IMP cyclohydrolase
Probab=32.76 E-value=94 Score=33.04 Aligned_cols=48 Identities=23% Similarity=0.138 Sum_probs=32.2
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh
Q 022363 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 75 KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
++-.|||= -+-|| +.++|+.|.+.|+++.--. +..+.|.+.||+|.+-
T Consensus 22 ~krALISV-sDKtg----i~~fAk~L~~~gveIiSTg------------GTak~L~e~Gi~v~~V 69 (547)
T PLN02891 22 KKQALISL-SDKTD----LALLANGLQELGYTIVSTG------------GTASALEAAGVSVTKV 69 (547)
T ss_pred ccEEEEEE-ecccC----HHHHHHHHHHCCCEEEEcc------------hHHHHHHHcCCceeeH
Confidence 44444442 23456 7899999999998865332 2357777789988754
No 377
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=32.65 E-value=2.5e+02 Score=27.42 Aligned_cols=83 Identities=22% Similarity=0.214 Sum_probs=48.7
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhccC
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~aD 152 (298)
.+|+|+++. ++.+|= ..+++|++.|++|...=.+.. . ...+++ +.|++++...... +...++|
T Consensus 5 ~~~~i~v~G--~G~sG~-----s~~~~l~~~G~~v~~~D~~~~---~----~~~~~l-~~g~~~~~~~~~~--~~~~~~d 67 (438)
T PRK03806 5 QGKKVVIIG--LGLTGL-----SCVDFFLARGVTPRVIDTRIT---P----PGLDKL-PENVERHTGSLND--EWLLAAD 67 (438)
T ss_pred CCCEEEEEe--eCHHHH-----HHHHHHHHCCCeEEEEcCCCC---c----hhHHHH-hcCCEEEeCCCCH--HHhcCCC
Confidence 478898887 555553 333568899998755322211 1 112344 4599887642221 1235789
Q ss_pred EEEEechhc--hHHHHHHhhcc
Q 022363 153 LIVLNTAVA--GKWLDAVLKED 172 (298)
Q Consensus 153 LVIaNT~v~--g~wl~~l~~~~ 172 (298)
+||+...+. .+++.+..+..
T Consensus 68 ~vv~spgi~~~~~~~~~a~~~g 89 (438)
T PRK03806 68 LIVASPGIALAHPSLSAAADAG 89 (438)
T ss_pred EEEECCCCCCCCHHHHHHHHCC
Confidence 999988875 44555554333
No 378
>PRK06198 short chain dehydrogenase; Provisional
Probab=32.48 E-value=2.3e+02 Score=24.61 Aligned_cols=80 Identities=14% Similarity=0.085 Sum_probs=44.0
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--e--ehhchhHH-
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--I--SAKGQETI- 145 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v--~--~~k~~~~i- 145 (298)
.+++|+|+++. -+|+ +=..+++.|.+.|++.++++.+..+. . ..+.+++...+-.+ + +-...+++
T Consensus 3 ~~~~k~vlItG----a~g~--iG~~la~~l~~~G~~~V~~~~r~~~~---~-~~~~~~l~~~~~~~~~~~~D~~~~~~~~ 72 (260)
T PRK06198 3 RLDGKVALVTG----GTQG--LGAAIARAFAERGAAGLVICGRNAEK---G-EAQAAELEALGAKAVFVQADLSDVEDCR 72 (260)
T ss_pred CCCCcEEEEeC----CCch--HHHHHHHHHHHCCCCeEEEEcCCHHH---H-HHHHHHHHhcCCeEEEEEccCCCHHHHH
Confidence 36788888765 2333 66788889999999944445444321 1 12344554444332 2 11212222
Q ss_pred ---H----hhhccCEEEEechh
Q 022363 146 ---N----TALKADLIVLNTAV 160 (298)
Q Consensus 146 ---~----~A~~aDLVIaNT~v 160 (298)
+ ....+|.||.|...
T Consensus 73 ~~~~~~~~~~g~id~li~~ag~ 94 (260)
T PRK06198 73 RVVAAADEAFGRLDALVNAAGL 94 (260)
T ss_pred HHHHHHHHHhCCCCEEEECCCc
Confidence 2 12468999988765
No 379
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=32.41 E-value=1.1e+02 Score=29.26 Aligned_cols=43 Identities=21% Similarity=0.282 Sum_probs=31.2
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (298)
+-++||+|++| .|.-.||+ -|.+.++.|++.|...+.+..-+|
T Consensus 206 ~~v~g~~vliV-DDii~tG~--Tl~~a~~~l~~~ga~~v~~~~th~ 248 (308)
T TIGR01251 206 GDVEGKDVVIV-DDIIDTGG--TIAKAAEILKSAGAKRVIAAATHG 248 (308)
T ss_pred cccCCCEEEEE-ccccCCHH--HHHHHHHHHHhcCCCEEEEEEEee
Confidence 34689977766 45666677 688999999999988665554443
No 380
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=32.04 E-value=2.1e+02 Score=24.01 Aligned_cols=74 Identities=30% Similarity=0.199 Sum_probs=43.4
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEEe-ccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhccCEEEEechhchHHH
Q 022363 87 SGGPLLLMELAFLLRGVGTKVNWIT-IQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWL 165 (298)
Q Consensus 87 TGAPLlLleLA~~Lkq~G~~V~vL~-~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~aDLVIaNT~v~g~wl 165 (298)
+-++|-.-++..+|.. +.+++++. ++.+-. .+-+.+.+.+.++||.+..+ +|..+-+=+
T Consensus 42 ~~~~l~~~~l~~ll~~-~peivliGTG~~~~~--~~~~~~~~~l~~~Gi~ve~m-----------------~T~aAcrTY 101 (117)
T cd05126 42 TSHGLQPEELEELLEE-GVEVIVIGTGQSGAL--KVPPETVEKLEKRGVEVLVL-----------------PTEEAVKRY 101 (117)
T ss_pred CcccCCHHHHHHHHhc-CCCEEEEcCCCCccc--cCCHHHHHHHHhcCCEEEEc-----------------ChHHHHHHH
Confidence 4456778888888865 67776666 443310 11223445555556665544 555555556
Q ss_pred HHHhhccCCCCCCceEEEee
Q 022363 166 DAVLKEDVPRVLPNVLWWIH 185 (298)
Q Consensus 166 ~~l~~~~~p~~~~pVIWWIH 185 (298)
..|..|.. +|...||
T Consensus 102 N~L~~EgR-----rV~Aa~H 116 (117)
T cd05126 102 NELAGKGR-----RVLAVIH 116 (117)
T ss_pred HHHHhCCC-----eEEEEEe
Confidence 66665555 7888887
No 381
>PRK11595 DNA utilization protein GntX; Provisional
Probab=31.95 E-value=74 Score=28.87 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=28.1
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEE
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN 108 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~ 108 (298)
++||+||+| .|.-.||+ -|.+.++.|++.|...+
T Consensus 185 ~~~~~vllv-DDv~tTG~--Tl~~~~~~L~~~g~~~V 218 (227)
T PRK11595 185 VQGQHMAIV-DDVVTTGS--TVAEIAQLLLRNGAASV 218 (227)
T ss_pred CCCCEEEEE-eeeecchH--HHHHHHHHHHHcCCcEE
Confidence 578887665 78888999 88999999999997643
No 382
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=31.93 E-value=3.9e+02 Score=24.14 Aligned_cols=40 Identities=13% Similarity=0.043 Sum_probs=25.2
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (298)
+++.|-+|.-+++..--.-++-.+-..+++.|+++.+...
T Consensus 60 ~~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~~~~~~~~ 99 (328)
T PRK11303 60 RTRSIGLIIPDLENTSYARIAKYLERQARQRGYQLLIACS 99 (328)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 4556777765554333333445566778888999887653
No 383
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=31.88 E-value=53 Score=34.03 Aligned_cols=81 Identities=23% Similarity=0.259 Sum_probs=51.2
Q ss_pred EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh-ch-------hHHHhh
Q 022363 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-GQ-------ETINTA 148 (298)
Q Consensus 77 ILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k-~~-------~~i~~A 148 (298)
|+++. |-.+|---.---||.+|+..|..|-++++.-- -.--+.-|+..-..-|++++..- +. +.++.|
T Consensus 103 ImmvG--LQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~--RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 103 ILMVG--LQGSGKTTTAGKLAKYLKKKGKKVLLVAADTY--RPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred EEEEe--ccCCChHhHHHHHHHHHHHcCCceEEEecccC--ChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 55665 55667777888899999999999998884321 11122334444444588888652 11 122233
Q ss_pred --hccCEEEEechhc
Q 022363 149 --LKADLIVLNTAVA 161 (298)
Q Consensus 149 --~~aDLVIaNT~v~ 161 (298)
..+|+||+-|+-=
T Consensus 179 k~~~~DvvIvDTAGR 193 (451)
T COG0541 179 KEEGYDVVIVDTAGR 193 (451)
T ss_pred HHcCCCEEEEeCCCc
Confidence 3579999999853
No 384
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=31.79 E-value=1.1e+02 Score=31.17 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh--hchhHHHh--hhccCEEEEec
Q 022363 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA--KGQETINT--ALKADLIVLNT 158 (298)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~--k~~~~i~~--A~~aDLVIaNT 158 (298)
+=-++++.|++.|++++++-.+. ...+++.+.|.+++.. ...+..+. ..++|.|++.|
T Consensus 428 ~G~~la~~L~~~g~~vvvId~d~---------~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~ 489 (558)
T PRK10669 428 VGSLLGEKLLAAGIPLVVIETSR---------TRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTI 489 (558)
T ss_pred HHHHHHHHHHHCCCCEEEEECCH---------HHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEc
Confidence 44579999999999998776331 1246677789988844 33444443 45999888754
No 385
>PLN02494 adenosylhomocysteinase
Probab=31.78 E-value=1.2e+02 Score=31.60 Aligned_cols=79 Identities=23% Similarity=0.202 Sum_probs=54.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc------hhHH
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------QETI 145 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~------~~~i 145 (298)
.+|.+|-.--|==--|+ .|++-|+..|++|.|-.++--+..|++...| .+.||+|+--++ ...+
T Consensus 44 l~G~~i~~~lHl~~kTa------~L~~tL~~~GA~v~~~~~Np~sTqd~vaaal----~~~gi~vfa~~g~~~~ey~~~~ 113 (477)
T PLN02494 44 FKGARITGSLHMTIQTA------VLIETLTALGAEVRWCSCNIFSTQDHAAAAI----ARDSAAVFAWKGETLQEYWWCT 113 (477)
T ss_pred CCCCEEEEEEechHHHH------HHHHHHHHcCCEEEEEcCCCccchHHHHHHH----HhCCceEEEecCCCHHHHHHHH
Confidence 46888888777433332 4778899999999999988777888885544 457999995543 2333
Q ss_pred Hhhh------ccCEEEEechh
Q 022363 146 NTAL------KADLIVLNTAV 160 (298)
Q Consensus 146 ~~A~------~aDLVIaNT~v 160 (298)
..+. ..|+|+=+-.=
T Consensus 114 ~~~l~~~~~~~p~~i~DDG~d 134 (477)
T PLN02494 114 ERALDWGPGGGPDLIVDDGGD 134 (477)
T ss_pred HHHHcCCCCCCCCEEEeCCch
Confidence 3322 27788776543
No 386
>PRK12746 short chain dehydrogenase; Provisional
Probab=31.69 E-value=2.2e+02 Score=24.70 Aligned_cols=36 Identities=19% Similarity=0.114 Sum_probs=25.2
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEecc
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (298)
|++|+|++.+ -+| -+=.++|+.|.+.|..|.++..+
T Consensus 4 ~~~~~ilItG----asg--~iG~~la~~l~~~G~~v~i~~~r 39 (254)
T PRK12746 4 LDGKVALVTG----ASR--GIGRAIAMRLANDGALVAIHYGR 39 (254)
T ss_pred CCCCEEEEeC----CCc--hHHHHHHHHHHHCCCEEEEEcCC
Confidence 4567777655 223 36678899999999998776544
No 387
>PRK07035 short chain dehydrogenase; Provisional
Probab=31.57 E-value=2.9e+02 Score=23.96 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=24.6
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (298)
+++|++|+. .|+.-+=.++++.|.+.|+.|+++..
T Consensus 6 l~~k~vlIt------Gas~gIG~~l~~~l~~~G~~Vi~~~r 40 (252)
T PRK07035 6 LTGKIALVT------GASRGIGEAIAKLLAQQGAHVIVSSR 40 (252)
T ss_pred cCCCEEEEE------CCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 567766554 23334667899999999999877763
No 388
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=31.41 E-value=1.4e+02 Score=30.33 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=21.1
Q ss_pred chHHHHHHHHHHHhCC-CeEEEEec
Q 022363 89 GPLLLMELAFLLRGVG-TKVNWITI 112 (298)
Q Consensus 89 APLlLleLA~~Lkq~G-~~V~vL~~ 112 (298)
-|+-|+.||-.|++.| ++|.++=.
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~ 45 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDA 45 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecc
Confidence 5999999999999999 79988853
No 389
>PRK12747 short chain dehydrogenase; Provisional
Probab=31.39 E-value=2.1e+02 Score=24.84 Aligned_cols=37 Identities=19% Similarity=0.099 Sum_probs=25.7
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEecc
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (298)
|+++|.+|+.. |+.=+=.++++.|.+.|+.|.+...+
T Consensus 1 ~~~~k~~lItG------as~gIG~~ia~~l~~~G~~v~~~~~~ 37 (252)
T PRK12747 1 MLKGKVALVTG------ASRGIGRAIAKRLANDGALVAIHYGN 37 (252)
T ss_pred CCCCCEEEEeC------CCChHHHHHHHHHHHCCCeEEEEcCC
Confidence 46788776654 22235568899999999998876533
No 390
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=31.25 E-value=1e+02 Score=26.62 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=28.8
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEE
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN 108 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~ 108 (298)
..+|++||+| .|.-.||+ -+.+.+..|++.|.+++
T Consensus 111 ~~~g~~VLIV-DDivtTG~--Tl~~~~~~l~~~Ga~~v 145 (175)
T PRK02304 111 IKPGDRVLIV-DDLLATGG--TLEAAIKLLERLGAEVV 145 (175)
T ss_pred cCCCCEEEEE-eCCccccH--HHHHHHHHHHHcCCEEE
Confidence 4789998877 67778888 48889999999998855
No 391
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.11 E-value=2.4e+02 Score=25.04 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=24.5
Q ss_pred cccccccEEEEEeccCCCCCch---HHHHHHHHHHHhCCCeEEEEe
Q 022363 69 LSFMKSKLVLLVSHELSLSGGP---LLLMELAFLLRGVGTKVNWIT 111 (298)
Q Consensus 69 ~~f~~~KkILLISHELS~TGAP---LlLleLA~~Lkq~G~~V~vL~ 111 (298)
..-++||.+|+. ||. =.=.++|+.|.+.|++|.+..
T Consensus 5 ~~~~~~k~~lIt-------Gas~g~GIG~a~a~~la~~G~~v~l~~ 43 (258)
T PRK07533 5 LLPLAGKRGLVV-------GIANEQSIAWGCARAFRALGAELAVTY 43 (258)
T ss_pred ccccCCCEEEEE-------CCCCCCcHHHHHHHHHHHcCCEEEEEe
Confidence 334678866553 322 244788999999999987765
No 392
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=31.10 E-value=2e+02 Score=24.74 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=12.2
Q ss_pred hhhccCEEEEechhc
Q 022363 147 TALKADLIVLNTAVA 161 (298)
Q Consensus 147 ~A~~aDLVIaNT~v~ 161 (298)
...++|.||.-|...
T Consensus 68 ~v~~ADIVvsAtg~~ 82 (140)
T cd05212 68 KVHDADVVVVGSPKP 82 (140)
T ss_pred HHhhCCEEEEecCCC
Confidence 457899999988865
No 393
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=30.97 E-value=1.8e+02 Score=22.79 Aligned_cols=35 Identities=23% Similarity=0.161 Sum_probs=24.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEE
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWI 110 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL 110 (298)
-+++.|++.-. +|.+......+..|++.|+++.+|
T Consensus 62 ~~~~~vvvyc~----~g~~~~s~~~a~~l~~~G~~v~~l 96 (110)
T cd01521 62 DKEKLFVVYCD----GPGCNGATKAALKLAELGFPVKEM 96 (110)
T ss_pred CCCCeEEEEEC----CCCCchHHHHHHHHHHcCCeEEEe
Confidence 35778888864 333344566778899999986544
No 394
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=30.90 E-value=1.9e+02 Score=24.91 Aligned_cols=66 Identities=15% Similarity=0.197 Sum_probs=41.0
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhC--CCeEEEEeccCCCCchhhhhhhHHHHHHc-CCceeehh-----chhHHH
Q 022363 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISAK-----GQETIN 146 (298)
Q Consensus 75 KkILLISHELS~TGAPLlLleLA~~Lkq~--G~~V~vL~~~~G~~~g~v~~~L~~kll~r-gI~v~~~k-----~~~~i~ 146 (298)
++|++.-||.+- =-++++++.|.+. |+++.... | ..+-+.+. |+++-.-- +...+-
T Consensus 5 ~~v~lsv~d~dK----~~l~~~a~~l~~ll~Gf~l~AT~---g---------Ta~~L~~~~Gi~v~~vi~~~~gg~~~i~ 68 (142)
T PRK05234 5 KRIALIAHDHKK----DDLVAWVKAHKDLLEQHELYATG---T---------TGGLIQEATGLDVTRLLSGPLGGDQQIG 68 (142)
T ss_pred cEEEEEEeccch----HHHHHHHHHHHHHhcCCEEEEeC---h---------HHHHHHhccCCeeEEEEcCCCCCchhHH
Confidence 468888888874 3667999999999 98854332 2 23455566 88654321 222222
Q ss_pred ---hhhccCEEEE
Q 022363 147 ---TALKADLIVL 156 (298)
Q Consensus 147 ---~A~~aDLVIa 156 (298)
...++|+||.
T Consensus 69 ~~I~~g~i~lVIn 81 (142)
T PRK05234 69 ALIAEGKIDMLIF 81 (142)
T ss_pred HHHHcCceeEEEE
Confidence 3568888753
No 395
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=30.80 E-value=1.2e+02 Score=27.82 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=22.6
Q ss_pred HHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee
Q 022363 93 LMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI 137 (298)
Q Consensus 93 LleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~ 137 (298)
+.++|+.|.+.|+++.--. +..+-|.+.||++.
T Consensus 13 l~~lAk~L~~lGf~I~AT~------------GTAk~L~e~GI~v~ 45 (187)
T cd01421 13 LVEFAKELVELGVEILSTG------------GTAKFLKEAGIPVT 45 (187)
T ss_pred HHHHHHHHHHCCCEEEEcc------------HHHHHHHHcCCeEE
Confidence 5789999999999886332 23455666677664
No 396
>PLN02342 ornithine carbamoyltransferase
Probab=30.42 E-value=2.5e+02 Score=27.89 Aligned_cols=75 Identities=9% Similarity=0.103 Sum_probs=46.2
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCC---ceeehhchhHHHhh
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV---QVISAKGQETINTA 148 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI---~v~~~k~~~~i~~A 148 (298)
.+|++|.+|++- ++ +.-.++..+...|.+|.+.+-++=....++ .++..+.|. .+.++ --...
T Consensus 192 l~glkva~vGD~-~n-----va~Sli~~~~~~G~~v~~~~P~~~~~~~~~----~~~a~~~g~~~~~~~~d----~~eav 257 (348)
T PLN02342 192 LEGTKVVYVGDG-NN-----IVHSWLLLAAVLPFHFVCACPKGYEPDAKT----VEKARAAGISKIEITND----PAEAV 257 (348)
T ss_pred cCCCEEEEECCC-ch-----hHHHHHHHHHHcCCEEEEECCcccccCHHH----HHHHHHhCCCcEEEEcC----HHHHh
Confidence 789999999863 33 566666777778999988884332122222 233444443 23332 11256
Q ss_pred hccCEEEEechh
Q 022363 149 LKADLIVLNTAV 160 (298)
Q Consensus 149 ~~aDLVIaNT~v 160 (298)
.++|.|+..+.+
T Consensus 258 ~~aDVvy~~~W~ 269 (348)
T PLN02342 258 KGADVVYTDVWA 269 (348)
T ss_pred CCCCEEEECCcc
Confidence 799999998743
No 397
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=30.41 E-value=1.4e+02 Score=29.15 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=33.5
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~ 116 (298)
-++||++++| .|.=.||+- |.+.++.|++.|+..+....-+|-
T Consensus 215 dv~Gk~VIIV-DDIi~TG~T--l~~aa~~Lk~~GA~~V~~~atHgl 257 (332)
T PRK00553 215 EVKNKNCLIV-DDMIDTGGT--VIAAAKLLKKQKAKKVCVMATHGL 257 (332)
T ss_pred cCCCCEEEEE-eccccchHH--HHHHHHHHHHcCCcEEEEEEEeee
Confidence 3689988777 566777774 788999999999997777766663
No 398
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=30.39 E-value=85 Score=23.55 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=29.4
Q ss_pred ccCCCCchhhh-hhhHHHHHHcCCceeehhch-hHH-HhhhccCEEEEechhch
Q 022363 112 IQKPSEEDEVI-YSLEHKMWDRGVQVISAKGQ-ETI-NTALKADLIVLNTAVAG 162 (298)
Q Consensus 112 ~~~G~~~g~v~-~~L~~kll~rgI~v~~~k~~-~~i-~~A~~aDLVIaNT~v~g 162 (298)
|..|-.++-+. .-+++.+.++|+++...... ... ....++|+|+.-.-+..
T Consensus 6 C~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~~~~~~~~~~~~D~il~~~~i~~ 59 (90)
T PF02302_consen 6 CGSGIGTSLMVANKIKKALKELGIEVEVSAGSILEVEEIADDADLILLTPQIAY 59 (90)
T ss_dssp ESSSSHHHHHHHHHHHHHHHHTTECEEEEEEETTTHHHHHTT-SEEEEEESSGG
T ss_pred CCChHHHHHHHHHHHHHHHHhccCceEEEEecccccccccCCCcEEEEcCccch
Confidence 34344344554 55666667777776644333 122 24567999998887665
No 399
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.30 E-value=1.1e+02 Score=29.37 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=23.1
Q ss_pred hhhhhHHHHHHcCCceee-hhchhHH-HhhhccCEEEEech
Q 022363 121 VIYSLEHKMWDRGVQVIS-AKGQETI-NTALKADLIVLNTA 159 (298)
Q Consensus 121 v~~~L~~kll~rgI~v~~-~k~~~~i-~~A~~aDLVIaNT~ 159 (298)
+-.|+...|+++|..|.. ++.-+.+ +...++|+||.-|-
T Consensus 171 vGkpia~~L~~~gatVtv~~~~t~~L~~~~~~aDIvI~AtG 211 (283)
T PRK14192 171 LGKPMAMMLLNANATVTICHSRTQNLPELVKQADIIVGAVG 211 (283)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCchhHHHHhccCCEEEEccC
Confidence 334666777777765542 2222222 24579999999883
No 400
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=29.99 E-value=1.7e+02 Score=26.67 Aligned_cols=72 Identities=17% Similarity=0.106 Sum_probs=47.4
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc-CCceeehhchhHHH-----hhhccCEEEEechh
Q 022363 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISAKGQETIN-----TALKADLIVLNTAV 160 (298)
Q Consensus 87 TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~r-gI~v~~~k~~~~i~-----~A~~aDLVIaNT~v 160 (298)
.|-|+ ++|+.+.+.|++-..+..=.+..+......+.+++.+. ++|+.-.-|.++++ ....+|-|++||..
T Consensus 31 ~~dp~---~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~ 107 (241)
T PRK14024 31 YGSPL---DAALAWQRDGAEWIHLVDLDAAFGRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAA 107 (241)
T ss_pred CCCHH---HHHHHHHHCCCCEEEEEeccccCCCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchH
Confidence 46776 68889999999855555222332333334566666665 78888776655544 23479999999997
Q ss_pred c
Q 022363 161 A 161 (298)
Q Consensus 161 ~ 161 (298)
.
T Consensus 108 l 108 (241)
T PRK14024 108 L 108 (241)
T ss_pred h
Confidence 4
No 401
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=29.93 E-value=1.1e+02 Score=24.90 Aligned_cols=11 Identities=27% Similarity=0.308 Sum_probs=8.5
Q ss_pred hhhccCEEEEe
Q 022363 147 TALKADLIVLN 157 (298)
Q Consensus 147 ~A~~aDLVIaN 157 (298)
...++|+||+=
T Consensus 74 ~l~~aDlvl~i 84 (137)
T PF00205_consen 74 ALEQADLVLAI 84 (137)
T ss_dssp HHHHSSEEEEE
T ss_pred HhcCCCEEEEE
Confidence 56799999863
No 402
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=29.92 E-value=1.4e+02 Score=28.45 Aligned_cols=78 Identities=26% Similarity=0.309 Sum_probs=46.3
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc-CCceeehhchhH-HHhhhcc
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISAKGQET-INTALKA 151 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~r-gI~v~~~k~~~~-i~~A~~a 151 (298)
.++|+++. ++.=|+ .+|+.||+.|..|.++..+.- ...++.. ...+.++..... ...+.++
T Consensus 3 ~~~v~IvG--~GliG~-----s~a~~l~~~g~~v~i~g~d~~----------~~~~~~a~~lgv~d~~~~~~~~~~~~~a 65 (279)
T COG0287 3 SMKVGIVG--LGLMGG-----SLARALKEAGLVVRIIGRDRS----------AATLKAALELGVIDELTVAGLAEAAAEA 65 (279)
T ss_pred CcEEEEEC--CchHHH-----HHHHHHHHcCCeEEEEeecCc----------HHHHHHHhhcCcccccccchhhhhcccC
Confidence 45677776 555555 678999999999998874432 1222222 244444321221 3356789
Q ss_pred CEEEEechhc--hHHHHHH
Q 022363 152 DLIVLNTAVA--GKWLDAV 168 (298)
Q Consensus 152 DLVIaNT~v~--g~wl~~l 168 (298)
|+||+-+=+. ...++++
T Consensus 66 D~VivavPi~~~~~~l~~l 84 (279)
T COG0287 66 DLVIVAVPIEATEEVLKEL 84 (279)
T ss_pred CEEEEeccHHHHHHHHHHh
Confidence 9999987654 3444444
No 403
>PLN02285 methionyl-tRNA formyltransferase
Probab=29.91 E-value=2.6e+02 Score=27.24 Aligned_cols=76 Identities=17% Similarity=0.286 Sum_probs=41.8
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHh------CCCeEEEEeccCCCCc----hhhhhhhHHHHHHcCCc---eeehh-
Q 022363 75 KLVLLVSHELSLSGGPLLLMELAFLLRG------VGTKVNWITIQKPSEE----DEVIYSLEHKMWDRGVQ---VISAK- 140 (298)
Q Consensus 75 KkILLISHELS~TGAPLlLleLA~~Lkq------~G~~V~vL~~~~G~~~----g~v~~~L~~kll~rgI~---v~~~k- 140 (298)
.||+|+ |.|-+-..-.+.|.. .+++|+.+..+.+... .....+.++..++.||+ ++...
T Consensus 7 ~kI~f~-------Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~ 79 (334)
T PLN02285 7 KRLVFL-------GTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEK 79 (334)
T ss_pred cEEEEE-------ECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccc
Confidence 457766 444343333444433 4788888775543211 12223568888889999 54321
Q ss_pred --chhHHH--hhhccCEEEEe
Q 022363 141 --GQETIN--TALKADLIVLN 157 (298)
Q Consensus 141 --~~~~i~--~A~~aDLVIaN 157 (298)
..+.++ ...++|++|+-
T Consensus 80 ~~~~~~~~~l~~~~~Dliv~~ 100 (334)
T PLN02285 80 AGEEDFLSALRELQPDLCITA 100 (334)
T ss_pred cCCHHHHHHHHhhCCCEEEhh
Confidence 112222 35699999864
No 404
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=29.73 E-value=2.4e+02 Score=23.59 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=28.6
Q ss_pred EEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 022363 78 LLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (298)
Q Consensus 78 LLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (298)
+.+.---+..|-..+-.+||..|.+.|..|.++=
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD 35 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLD 35 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEe
Confidence 4455556778999999999999999999999885
No 405
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=29.55 E-value=1.7e+02 Score=28.14 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=31.4
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (298)
-++||++++| .|.=-||+ -|.+.++.|++.|..=+.+..-+|
T Consensus 198 dv~gr~viIV-DDIi~TG~--Tl~~aa~~Lk~~Ga~~I~~~~tH~ 239 (304)
T PRK03092 198 DVEGRTCVLV-DDMIDTGG--TIAGAVRALKEAGAKDVIIAATHG 239 (304)
T ss_pred CCCCCEEEEE-ccccCcHH--HHHHHHHHHHhcCCCeEEEEEEcc
Confidence 4799986665 66777777 477999999999988655555554
No 406
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=29.54 E-value=2.2e+02 Score=31.58 Aligned_cols=104 Identities=19% Similarity=0.132 Sum_probs=59.1
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhh
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTAL 149 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~ 149 (298)
.+..||++.+.. .|-.+..+++.|.+.|.+++.++..... +..+++. .+.-.+.|.+.-+. .+.
T Consensus 783 ~~l~gkrvai~~-------~~d~~~~l~~~l~elG~~v~~~~~~~~~-------~~~~~l~-~~~v~v~D~~~~e~-~~~ 846 (917)
T PRK14477 783 YQFGGKKVALAL-------EPDLLKALTSFLAGMGCEIQAAVAATRS-------RGLDRLP-AENVFVGDLEDLET-AAA 846 (917)
T ss_pred HhcCCCEEEEEe-------ChHHHHHHHHHHHHcCCeEEEEEeCCCh-------HHHHhCC-cCcEEeCCHHHHHh-hcc
Confidence 356799987654 4556888999999999999998854431 1122321 12112233222222 357
Q ss_pred ccCEEEEechhchHHHHHHhhccC-CCC--CCceEEEeeeccccccc
Q 022363 150 KADLIVLNTAVAGKWLDAVLKEDV-PRV--LPNVLWWIHEMRGHYFK 193 (298)
Q Consensus 150 ~aDLVIaNT~v~g~wl~~l~~~~~-p~~--~~pVIWWIHE~r~~Yf~ 193 (298)
++|++|.|+-. +++.+=+ ++ |.. .-|+.--++..++.|..
T Consensus 847 ~~dllig~s~~--~~~A~~l--~i~p~~r~g~Pi~Dr~g~~~~~~~G 889 (917)
T PRK14477 847 GADLLVANSNG--RQAAARL--GIKAHLRAGLPVFDRLGAHQKMWVG 889 (917)
T ss_pred CCCEEEECchH--HHHHHHc--CCCceEEecCCcccccCCcccceee
Confidence 89999999963 4443222 33 331 12554445555555555
No 407
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=29.54 E-value=3.2e+02 Score=30.69 Aligned_cols=81 Identities=19% Similarity=0.110 Sum_probs=55.6
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccC--CC----------CchhhhhhhHHHHHHcCCceeehh
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK--PS----------EEDEVIYSLEHKMWDRGVQVISAK 140 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~--G~----------~~g~v~~~L~~kll~rgI~v~~~k 140 (298)
+||+|++| ||=-.=|..|.+|.+.|++|.++-... |+ ...+++....+.+.+.|+.+....
T Consensus 429 ~~~kVaII-------G~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~ 501 (1006)
T PRK12775 429 KLGKVAIC-------GSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNK 501 (1006)
T ss_pred CCCEEEEE-------CCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 58899999 444467889999999999999887321 11 124555566778888899887652
Q ss_pred c---hhHHHhh---hccCEEEEechh
Q 022363 141 G---QETINTA---LKADLIVLNTAV 160 (298)
Q Consensus 141 ~---~~~i~~A---~~aDLVIaNT~v 160 (298)
. .-+++.. ..||-||+-|-+
T Consensus 502 ~vg~~~~~~~l~~~~~yDaViIATGa 527 (1006)
T PRK12775 502 VIGKTFTVPQLMNDKGFDAVFLGVGA 527 (1006)
T ss_pred ccCCccCHHHHhhccCCCEEEEecCC
Confidence 1 1123322 369999999986
No 408
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=29.52 E-value=93 Score=26.64 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=30.3
Q ss_pred HHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc
Q 022363 95 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG 141 (298)
Q Consensus 95 eLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~ 141 (298)
.++..|+..|.++++...-++ .-.+-|.++||+++...+
T Consensus 56 ~~a~~l~~~gvdvvi~~~iG~--------~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 56 RIAELLVDEGVDVVIASNIGP--------NAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHcCCCEEEECccCH--------HHHHHHHHcCcEEEecCC
Confidence 356788999999999886654 346788888999997643
No 409
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=29.49 E-value=1.1e+02 Score=24.65 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=30.2
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (298)
+--++.||+ +|-.--+.+.++.+|+.|.++..+++..+
T Consensus 48 ~dl~I~iS~----SG~t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 48 KSVVILASH----SGNTKETVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred CcEEEEEeC----CCCChHHHHHHHHHHHcCCeEEEEECCCC
Confidence 344566654 67777899999999999999999997655
No 410
>PRK07774 short chain dehydrogenase; Provisional
Probab=29.26 E-value=3.7e+02 Score=23.11 Aligned_cols=79 Identities=15% Similarity=0.158 Sum_probs=43.8
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--e-eh-hchhHHH-
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--I-SA-KGQETIN- 146 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v--~-~~-k~~~~i~- 146 (298)
+++|++|+++ -+| -+=.++++.|.+.|++|.++... .+ .. ..+.+++.+.+-.+ + -| ....++.
T Consensus 4 ~~~k~vlItG----asg--~iG~~la~~l~~~g~~vi~~~r~-~~---~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 72 (250)
T PRK07774 4 FDDKVAIVTG----AAG--GIGQAYAEALAREGASVVVADIN-AE---GA-ERVAKQIVADGGTAIAVQVDVSDPDSAKA 72 (250)
T ss_pred cCCCEEEEEC----CCc--hHHHHHHHHHHHCCCEEEEEeCC-HH---HH-HHHHHHHHhcCCcEEEEEcCCCCHHHHHH
Confidence 5678877764 223 36678899999999998877633 21 11 12334443332111 1 11 2222222
Q ss_pred -------hhhccCEEEEechhc
Q 022363 147 -------TALKADLIVLNTAVA 161 (298)
Q Consensus 147 -------~A~~aDLVIaNT~v~ 161 (298)
...++|.||.|+.+.
T Consensus 73 ~~~~~~~~~~~id~vi~~ag~~ 94 (250)
T PRK07774 73 MADATVSAFGGIDYLVNNAAIY 94 (250)
T ss_pred HHHHHHHHhCCCCEEEECCCCc
Confidence 224689999999864
No 411
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=29.24 E-value=3.8e+02 Score=23.36 Aligned_cols=76 Identities=11% Similarity=0.144 Sum_probs=43.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee----ehhchhHH--
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI----SAKGQETI-- 145 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~----~~k~~~~i-- 145 (298)
|++|++|+.. |+.-+=.++++.|.+.|++|.++... .. ...+.+++...+..+. +-...+++
T Consensus 6 ~~~k~vlVtG------as~gIG~~la~~l~~~G~~v~~~~r~-~~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 73 (260)
T PRK12823 6 FAGKVVVVTG------AAQGIGRGVALRAAAEGARVVLVDRS-EL-----VHEVAAELRAAGGEALALTADLETYAGAQA 73 (260)
T ss_pred cCCCEEEEeC------CCchHHHHHHHHHHHCCCEEEEEeCc-hH-----HHHHHHHHHhcCCeEEEEEEeCCCHHHHHH
Confidence 6788777643 22335578899999999998766532 11 1133455555444332 11222222
Q ss_pred --H----hhhccCEEEEech
Q 022363 146 --N----TALKADLIVLNTA 159 (298)
Q Consensus 146 --~----~A~~aDLVIaNT~ 159 (298)
+ ....+|.+|.|..
T Consensus 74 ~~~~~~~~~~~id~lv~nAg 93 (260)
T PRK12823 74 AMAAAVEAFGRIDVLINNVG 93 (260)
T ss_pred HHHHHHHHcCCCeEEEECCc
Confidence 2 1246899988875
No 412
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=29.24 E-value=1.3e+02 Score=30.53 Aligned_cols=89 Identities=16% Similarity=0.074 Sum_probs=53.4
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc----CCceeeh--hchh
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR----GVQVISA--KGQE 143 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~r----gI~v~~~--k~~~ 143 (298)
..-+++.-++|++.++.|.-=+-.++..+.....+.+|.+=.+.+++.+..+ .-+++.-.+. .++++.+ .-.+
T Consensus 180 ~~~~~~ltILvGNSgd~sNnHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi-~~V~~~~~~lF~~~~~~iL~e~mpf~e 258 (360)
T PF07429_consen 180 KKNKGKLTILVGNSGDPSNNHIEALEALKQQFGDDVKIIVPLSYGANNQAYI-QQVIQAGKELFGAENFQILTEFMPFDE 258 (360)
T ss_pred cCCCCceEEEEcCCCCCCccHHHHHHHHHHhcCCCeEEEEECCCCCchHHHH-HHHHHHHHHhcCccceeEhhhhCCHHH
Confidence 4456788999999999999998888866655555667766668865321222 2233333332 1233322 1222
Q ss_pred HHHhhhccCEEEEech
Q 022363 144 TINTALKADLIVLNTA 159 (298)
Q Consensus 144 ~i~~A~~aDLVIaNT~ 159 (298)
=++.+.+.|+.|.|-.
T Consensus 259 Yl~lL~~cDl~if~~~ 274 (360)
T PF07429_consen 259 YLALLSRCDLGIFNHN 274 (360)
T ss_pred HHHHHHhCCEEEEeec
Confidence 2335678888887753
No 413
>PRK07109 short chain dehydrogenase; Provisional
Probab=29.20 E-value=2.7e+02 Score=26.27 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=44.5
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee----ehhchhHHH-
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI----SAKGQETIN- 146 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~----~~k~~~~i~- 146 (298)
|++|+||+.. -+|+ +=.++++.|.+.|++|+++..+ .+ . ...+.+++...|.++. +-...++++
T Consensus 6 l~~k~vlITG----as~g--IG~~la~~la~~G~~Vvl~~R~-~~---~-l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~ 74 (334)
T PRK07109 6 IGRQVVVITG----ASAG--VGRATARAFARRGAKVVLLARG-EE---G-LEALAAEIRAAGGEALAVVADVADAEAVQA 74 (334)
T ss_pred CCCCEEEEEC----CCCH--HHHHHHHHHHHCCCEEEEEECC-HH---H-HHHHHHHHHHcCCcEEEEEecCCCHHHHHH
Confidence 5677666542 2333 6678899999999998777632 21 1 1223455555554443 112222232
Q ss_pred -------hhhccCEEEEechh
Q 022363 147 -------TALKADLIVLNTAV 160 (298)
Q Consensus 147 -------~A~~aDLVIaNT~v 160 (298)
....+|.+|.|..+
T Consensus 75 ~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 75 AADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHHHCCCCCEEEECCCc
Confidence 23478999988765
No 414
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=29.15 E-value=1.1e+02 Score=28.54 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=27.9
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEecc
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (298)
|++||+||+.. .|| -+=.++++.|.+.|++|..+..+
T Consensus 1 ~~~~k~ilItG----atG--~IG~~l~~~L~~~G~~V~~~~r~ 37 (349)
T TIGR02622 1 FWQGKKVLVTG----HTG--FKGSWLSLWLLELGAEVYGYSLD 37 (349)
T ss_pred CcCCCEEEEEC----CCC--hhHHHHHHHHHHCCCEEEEEeCC
Confidence 78899988765 233 25578999999999999877643
No 415
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=29.11 E-value=2e+02 Score=25.60 Aligned_cols=69 Identities=13% Similarity=0.057 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEec--cCCCCchhhhhhhHHHHHHc-CCceeehhchhHH---H---hhhccCEEEEechh
Q 022363 91 LLLMELAFLLRGVGTKVNWITI--QKPSEEDEVIYSLEHKMWDR-GVQVISAKGQETI---N---TALKADLIVLNTAV 160 (298)
Q Consensus 91 LlLleLA~~Lkq~G~~V~vL~~--~~G~~~g~v~~~L~~kll~r-gI~v~~~k~~~~i---~---~A~~aDLVIaNT~v 160 (298)
.-..++++.+.+.|++-.++++ +.|..+|. ...+.+++.+. ++|++-.=+..++ . ...++|.|+++|+.
T Consensus 153 ~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~-~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 153 RDPVEWAREAEQLGAGEILLNSIDRDGTMKGY-DLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEeCCCccCCcCCC-CHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 3457999999999999888885 33333332 34556666655 7888855333322 2 23589999999974
No 416
>PRK08264 short chain dehydrogenase; Validated
Probab=29.11 E-value=2.5e+02 Score=24.03 Aligned_cols=34 Identities=24% Similarity=0.183 Sum_probs=24.2
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCC-eEEEEe
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGT-KVNWIT 111 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~-~V~vL~ 111 (298)
+++|+||+++ |+--+=.++|+.|.+.|+ .|.++.
T Consensus 4 ~~~~~vlItG------gsg~iG~~la~~l~~~G~~~V~~~~ 38 (238)
T PRK08264 4 IKGKVVLVTG------ANRGIGRAFVEQLLARGAAKVYAAA 38 (238)
T ss_pred CCCCEEEEEC------CCchHHHHHHHHHHHCCcccEEEEe
Confidence 4567777764 333477899999999999 665555
No 417
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=29.07 E-value=2.3e+02 Score=22.95 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=38.5
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCC-CeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhc
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG-TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G-~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~ 150 (298)
.++++|++|+ +| ..=..+++.|.+.| .+|.+. ++..+ .. ..+.+++..+++...... .. +.+.+
T Consensus 17 ~~~~~i~iiG-----~G--~~g~~~a~~l~~~g~~~v~v~-~r~~~---~~-~~~~~~~~~~~~~~~~~~-~~--~~~~~ 81 (155)
T cd01065 17 LKGKKVLILG-----AG--GAARAVAYALAELGAAKIVIV-NRTLE---KA-KALAERFGELGIAIAYLD-LE--ELLAE 81 (155)
T ss_pred CCCCEEEEEC-----Cc--HHHHHHHHHHHHCCCCEEEEE-cCCHH---HH-HHHHHHHhhcccceeecc-hh--hcccc
Confidence 4578898885 23 24557778888886 455544 33321 11 111222221111111110 11 12578
Q ss_pred cCEEEEechhch
Q 022363 151 ADLIVLNTAVAG 162 (298)
Q Consensus 151 aDLVIaNT~v~g 162 (298)
+|+||.+|-...
T Consensus 82 ~Dvvi~~~~~~~ 93 (155)
T cd01065 82 ADLIINTTPVGM 93 (155)
T ss_pred CCEEEeCcCCCC
Confidence 999999987543
No 418
>PRK13984 putative oxidoreductase; Provisional
Probab=29.06 E-value=3.7e+02 Score=27.61 Aligned_cols=83 Identities=20% Similarity=0.175 Sum_probs=50.8
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC------------CchhhhhhhHHHHHHcCCceeeh
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS------------EEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~------------~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
-++|+|++|. . | ..=+..|..|++.|++|.++-..... ...++.....+.+.+.|+.+...
T Consensus 281 ~~~~~v~IIG--a---G--~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~ 353 (604)
T PRK13984 281 KKNKKVAIVG--S---G--PAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLN 353 (604)
T ss_pred cCCCeEEEEC--C---C--HHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECC
Confidence 3688999997 2 2 36678899999999999887522210 01122223345666778887654
Q ss_pred hch-h--HHH-hhhccCEEEEechhc
Q 022363 140 KGQ-E--TIN-TALKADLIVLNTAVA 161 (298)
Q Consensus 140 k~~-~--~i~-~A~~aDLVIaNT~v~ 161 (298)
..- . .++ ....||.||..|-..
T Consensus 354 ~~v~~~~~~~~~~~~yD~vilAtGa~ 379 (604)
T PRK13984 354 TRVGKDIPLEELREKHDAVFLSTGFT 379 (604)
T ss_pred CEeCCcCCHHHHHhcCCEEEEEcCcC
Confidence 211 0 111 224799999999853
No 419
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=29.05 E-value=1.7e+02 Score=25.25 Aligned_cols=79 Identities=18% Similarity=0.194 Sum_probs=41.6
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc-CCceee--hhchhHH-Hh
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVIS--AKGQETI-NT 147 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~r-gI~v~~--~k~~~~i-~~ 147 (298)
+++|+++++.-. |. +=..+++.|.+.|.+|.++. +..+ -...+.+.+..+ +.++.. ......+ ..
T Consensus 26 l~~~~vlVlGgt----G~--iG~~~a~~l~~~g~~V~l~~-R~~~----~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 94 (194)
T cd01078 26 LKGKTAVVLGGT----GP--VGQRAAVLLAREGARVVLVG-RDLE----RAQKAADSLRARFGEGVGAVETSDDAARAAA 94 (194)
T ss_pred CCCCEEEEECCC----CH--HHHHHHHHHHHCCCEEEEEc-CCHH----HHHHHHHHHHhhcCCcEEEeeCCCHHHHHHH
Confidence 467888888532 22 22456677777898887764 4321 111223333211 333321 1222222 34
Q ss_pred hhccCEEEEechhc
Q 022363 148 ALKADLIVLNTAVA 161 (298)
Q Consensus 148 A~~aDLVIaNT~v~ 161 (298)
+.++|+||..|...
T Consensus 95 ~~~~diVi~at~~g 108 (194)
T cd01078 95 IKGADVVFAAGAAG 108 (194)
T ss_pred HhcCCEEEECCCCC
Confidence 56899888877643
No 420
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=28.99 E-value=1.6e+02 Score=26.44 Aligned_cols=57 Identities=26% Similarity=0.324 Sum_probs=33.1
Q ss_pred HHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh-chhHHH----hhhccCEEEEechhch
Q 022363 94 MELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-GQETIN----TALKADLIVLNTAVAG 162 (298)
Q Consensus 94 leLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k-~~~~i~----~A~~aDLVIaNT~v~g 162 (298)
..||+.+...|++|.++.+... + .. -.++.++... ..+.++ .+.+.|.+|...+|+=
T Consensus 33 ~~lA~~~~~~Ga~V~li~g~~~-----~----~~---p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~aAAVsD 94 (185)
T PF04127_consen 33 AALAEEAARRGAEVTLIHGPSS-----L----PP---PPGVKVIRVESAEEMLEAVKELLPSADIIIMAAAVSD 94 (185)
T ss_dssp HHHHHHHHHTT-EEEEEE-TTS----------------TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-SB--S
T ss_pred HHHHHHHHHCCCEEEEEecCcc-----c----cc---cccceEEEecchhhhhhhhccccCcceeEEEecchhh
Confidence 5889999999999999995531 1 10 2356666442 222222 4567899999999863
No 421
>PRK05717 oxidoreductase; Validated
Probab=28.85 E-value=4e+02 Score=23.30 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=26.2
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (298)
-+.+||++|++. |+--+=.++|+.|.+.|.+|.++.
T Consensus 6 ~~~~~k~vlItG------~sg~IG~~~a~~l~~~g~~v~~~~ 41 (255)
T PRK05717 6 PGHNGRVALVTG------AARGIGLGIAAWLIAEGWQVVLAD 41 (255)
T ss_pred cccCCCEEEEeC------CcchHHHHHHHHHHHcCCEEEEEc
Confidence 356788777653 233466789999999999988875
No 422
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=28.78 E-value=1.7e+02 Score=24.06 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh--hchhHHH-hhhccCEEEEech
Q 022363 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA--KGQETIN-TALKADLIVLNTA 159 (298)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~--k~~~~i~-~A~~aDLVIaNT~ 159 (298)
+=-.+++.|.+.|++|..++.+.. .+.+ ..++.++.- ....++. .+.++|.||...-
T Consensus 10 vG~~l~~~L~~~~~~V~~~~R~~~--------~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~ 69 (183)
T PF13460_consen 10 VGRALAKQLLRRGHEVTALVRSPS--------KAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAG 69 (183)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSGG--------GHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCH
T ss_pred HHHHHHHHHHHCCCEEEEEecCch--------hccc---ccccccceeeehhhhhhhhhhhhcchhhhhhh
Confidence 445688999999999999995542 2223 567777743 3334454 5669998887765
No 423
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=28.76 E-value=3.2e+02 Score=26.37 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=44.2
Q ss_pred ccccEEEEEeccC-CCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhc
Q 022363 72 MKSKLVLLVSHEL-SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (298)
Q Consensus 72 ~~~KkILLISHEL-S~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~ 150 (298)
.+|++|.+|.+-. |++ +-.++..+...|.+|.+.+-++=....++ .+++.+.|..+..-.. .-....+
T Consensus 148 l~g~~va~vGD~~~~~v-----~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~----~~~~~~~G~~v~~~~d--~~~a~~~ 216 (301)
T TIGR00670 148 LDGLKIALVGDLKYGRT-----VHSLAEALTRFGVEVYLISPEELRMPKEI----LEELKAKGIKVRETES--LEEVIDE 216 (301)
T ss_pred CCCCEEEEEccCCCCcH-----HHHHHHHHHHcCCEEEEECCccccCCHHH----HHHHHHcCCEEEEECC--HHHHhCC
Confidence 6899999999533 443 33444445566999999884331111222 3455556766532111 1125679
Q ss_pred cCEEEEec
Q 022363 151 ADLIVLNT 158 (298)
Q Consensus 151 aDLVIaNT 158 (298)
+|.|+.-+
T Consensus 217 aDvvyt~~ 224 (301)
T TIGR00670 217 ADVLYVTR 224 (301)
T ss_pred CCEEEECC
Confidence 99999854
No 424
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=28.72 E-value=1.9e+02 Score=26.63 Aligned_cols=79 Identities=10% Similarity=0.021 Sum_probs=51.7
Q ss_pred CchHHHHHHHHHHHh-CCCeEEEEeccCCC-CchhhhhhhHHHHHHc-CCceeehhchhHHH-----hhhccCEEEEech
Q 022363 88 GGPLLLMELAFLLRG-VGTKVNWITIQKPS-EEDEVIYSLEHKMWDR-GVQVISAKGQETIN-----TALKADLIVLNTA 159 (298)
Q Consensus 88 GAPLlLleLA~~Lkq-~G~~V~vL~~~~G~-~~g~v~~~L~~kll~r-gI~v~~~k~~~~i~-----~A~~aDLVIaNT~ 159 (298)
|-|+ ++|+.+.+ .|++-..+..=.+. .+.+....+.+++.+. ++|+.-.-|.++++ ....+|-||+||.
T Consensus 31 ~dp~---~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~ 107 (234)
T PRK13587 31 RSAE---ESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTK 107 (234)
T ss_pred CCHH---HHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECch
Confidence 5555 48888888 68776666532233 2344455667777665 67877776666554 2347899999999
Q ss_pred hc--hHHHHHHh
Q 022363 160 VA--GKWLDAVL 169 (298)
Q Consensus 160 v~--g~wl~~l~ 169 (298)
+- -.+++++.
T Consensus 108 a~~~~~~l~~~~ 119 (234)
T PRK13587 108 GIQDTDWLKEMA 119 (234)
T ss_pred HhcCHHHHHHHH
Confidence 75 34677775
No 425
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=28.67 E-value=1.8e+02 Score=22.69 Aligned_cols=32 Identities=28% Similarity=0.279 Sum_probs=25.7
Q ss_pred ccCCCCCchHHHHHHHHHHHhCCCeEEEEecc
Q 022363 82 HELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (298)
Q Consensus 82 HELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (298)
+....-.-|+-++.++..|++.|++|..+-..
T Consensus 6 ~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~ 37 (121)
T PF02310_consen 6 ACVPGEVHPLGLLYLAAYLRKAGHEVDILDAN 37 (121)
T ss_dssp EEBTTSSTSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred EeeCCcchhHHHHHHHHHHHHCCCeEEEECCC
Confidence 34455567899999999999999999988533
No 426
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=28.60 E-value=3.3e+02 Score=26.75 Aligned_cols=84 Identities=12% Similarity=0.077 Sum_probs=45.7
Q ss_pred cccEEEEE--ec-cCCCCCchHHHHHHHHHHHhCCCeEEEEec-cCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhh
Q 022363 73 KSKLVLLV--SH-ELSLSGGPLLLMELAFLLRGVGTKVNWITI-QKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTA 148 (298)
Q Consensus 73 ~~KkILLI--SH-ELS~TGAPLlLleLA~~Lkq~G~~V~vL~~-~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A 148 (298)
+|++|.++ .| +...+ -+.-.++..+...|.+|.+.+- .+=....++..-.++...+.|..+..... .-+..
T Consensus 168 ~g~ki~i~~~gd~~~~~~---~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d--~~ea~ 242 (335)
T PRK04523 168 RGKKYVLTWTYHPKPLNT---AVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHD--IDSAY 242 (335)
T ss_pred CCCEEEEEEeccCccccc---HHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcC--HHHHh
Confidence 78999664 34 11111 2444455556667999998884 32122233333333344556755542211 12356
Q ss_pred hccCEEEEechhc
Q 022363 149 LKADLIVLNTAVA 161 (298)
Q Consensus 149 ~~aDLVIaNT~v~ 161 (298)
.++|.|++.+...
T Consensus 243 ~~aDvvy~~~w~~ 255 (335)
T PRK04523 243 AGADVVYAKSWGA 255 (335)
T ss_pred CCCCEEEeceeec
Confidence 7999999977754
No 427
>PLN02256 arogenate dehydrogenase
Probab=28.56 E-value=1.6e+02 Score=28.22 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=41.1
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhcc
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~a 151 (298)
+++++|.+|+ ++.-|+ .+|+.|++.|.+|........ .+...+.|+....+ .++. ...++
T Consensus 34 ~~~~kI~IIG--~G~mG~-----slA~~L~~~G~~V~~~d~~~~----------~~~a~~~gv~~~~~--~~e~-~~~~a 93 (304)
T PLN02256 34 SRKLKIGIVG--FGNFGQ-----FLAKTFVKQGHTVLATSRSDY----------SDIAAELGVSFFRD--PDDF-CEEHP 93 (304)
T ss_pred CCCCEEEEEe--eCHHHH-----HHHHHHHhCCCEEEEEECccH----------HHHHHHcCCeeeCC--HHHH-hhCCC
Confidence 4778999998 554455 467778888988776653210 23334456654332 1111 02468
Q ss_pred CEEEEechh
Q 022363 152 DLIVLNTAV 160 (298)
Q Consensus 152 DLVIaNT~v 160 (298)
|+||..|=.
T Consensus 94 DvVilavp~ 102 (304)
T PLN02256 94 DVVLLCTSI 102 (304)
T ss_pred CEEEEecCH
Confidence 999887754
No 428
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=28.48 E-value=3.5e+02 Score=24.55 Aligned_cols=78 Identities=17% Similarity=0.074 Sum_probs=47.5
Q ss_pred HHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh----chh----HHH--hhhccCEEEEechh--ch
Q 022363 95 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK----GQE----TIN--TALKADLIVLNTAV--AG 162 (298)
Q Consensus 95 eLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k----~~~----~i~--~A~~aDLVIaNT~v--~g 162 (298)
-++.++++.|..-+.+...+.+++......+.+.+.+.|++++... +.. .+. ...+.|.||..... +.
T Consensus 127 ~l~~~~~~~~~~~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~~~~ 206 (312)
T cd06346 127 ALAQLAAERGYKSVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVIGYPETGS 206 (312)
T ss_pred HHHHHHHHcCCCeEEEEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecccchHH
Confidence 3556677777654444444455556666677888888899987431 111 122 35689999987553 45
Q ss_pred HHHHHHhhcc
Q 022363 163 KWLDAVLKED 172 (298)
Q Consensus 163 ~wl~~l~~~~ 172 (298)
..++++.+..
T Consensus 207 ~~~~~~~~~G 216 (312)
T cd06346 207 GILRSAYEQG 216 (312)
T ss_pred HHHHHHHHcC
Confidence 6677775433
No 429
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=28.48 E-value=1.3e+02 Score=27.87 Aligned_cols=80 Identities=14% Similarity=0.129 Sum_probs=42.3
Q ss_pred ccEEEEEeccCCC-C--CchH-HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc-CCceeehhchhHH---
Q 022363 74 SKLVLLVSHELSL-S--GGPL-LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISAKGQETI--- 145 (298)
Q Consensus 74 ~KkILLISHELS~-T--GAPL-lLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~r-gI~v~~~k~~~~i--- 145 (298)
+|.++.|.+-.+. . -=|. -.-+|++.|.+.|.+++++. |+++-+. .+++.+. +-.++.--+..++
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G---~~~e~~~----~~~i~~~~~~~~~~l~g~~sL~el 245 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFG---SAKDHPA----GNEIEALLPGELRNLAGETSLDEA 245 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEE---ChhhHHH----HHHHHHhCCcccccCCCCCCHHHH
Confidence 5667777664431 1 2233 34489999988898877664 2222222 2333322 1122211222222
Q ss_pred -HhhhccCEEEEechh
Q 022363 146 -NTALKADLIVLNTAV 160 (298)
Q Consensus 146 -~~A~~aDLVIaNT~v 160 (298)
.....+|++|.|=-.
T Consensus 246 ~ali~~a~l~I~~DSG 261 (334)
T TIGR02195 246 VDLIALAKAVVTNDSG 261 (334)
T ss_pred HHHHHhCCEEEeeCCH
Confidence 256799999999543
No 430
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=28.45 E-value=2e+02 Score=26.43 Aligned_cols=77 Identities=17% Similarity=0.123 Sum_probs=48.8
Q ss_pred HHHHHHHHHhCCCeEEEEeccCCC-CchhhhhhhHHHHHHc-CCceeehhchhHHH-----hhhccCEEEEechhc--hH
Q 022363 93 LMELAFLLRGVGTKVNWITIQKPS-EEDEVIYSLEHKMWDR-GVQVISAKGQETIN-----TALKADLIVLNTAVA--GK 163 (298)
Q Consensus 93 LleLA~~Lkq~G~~V~vL~~~~G~-~~g~v~~~L~~kll~r-gI~v~~~k~~~~i~-----~A~~aDLVIaNT~v~--g~ 163 (298)
..++|+.+.+.|++-..++.-.+. ..+.....+..++.+. ++|+.-.-+.++.. ....+|.|+++|..- -.
T Consensus 32 p~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~p~ 111 (254)
T TIGR00735 32 PVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVKNPE 111 (254)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhhChH
Confidence 357888888999987777733332 3444555666666555 68888765555443 233699999999874 23
Q ss_pred HHHHHh
Q 022363 164 WLDAVL 169 (298)
Q Consensus 164 wl~~l~ 169 (298)
++.++.
T Consensus 112 ~~~~~~ 117 (254)
T TIGR00735 112 LIYELA 117 (254)
T ss_pred HHHHHH
Confidence 444443
No 431
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=28.41 E-value=2.6e+02 Score=26.92 Aligned_cols=69 Identities=23% Similarity=0.273 Sum_probs=41.6
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhC--CCeEEEEeccCCCCchhhhhhhHHHHHHcCCceee------hhc--hhH
Q 022363 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS------AKG--QET 144 (298)
Q Consensus 75 KkILLISHELS~TGAPLlLleLA~~Lkq~--G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~------~k~--~~~ 144 (298)
|..+|+|.+-+. |-.|....++. ++++.++.+.++ ...+...+.|||++. .+. ...
T Consensus 95 kiavl~Sg~g~n------l~al~~~~~~~~l~~~i~~visn~~--------~~~~~A~~~gIp~~~~~~~~~~~~~~~~~ 160 (289)
T PRK13010 95 KVVIMVSKFDHC------LNDLLYRWRMGELDMDIVGIISNHP--------DLQPLAVQHDIPFHHLPVTPDTKAQQEAQ 160 (289)
T ss_pred EEEEEEeCCCcc------HHHHHHHHHCCCCCcEEEEEEECCh--------hHHHHHHHcCCCEEEeCCCcccccchHHH
Confidence 788899886332 33344444443 578888886665 235677777999983 111 112
Q ss_pred H-H--hhhccCEEEEe
Q 022363 145 I-N--TALKADLIVLN 157 (298)
Q Consensus 145 i-~--~A~~aDLVIaN 157 (298)
+ + ...++|+|++-
T Consensus 161 ~~~~l~~~~~Dlivla 176 (289)
T PRK13010 161 ILDLIETSGAELVVLA 176 (289)
T ss_pred HHHHHHHhCCCEEEEe
Confidence 2 2 34589999864
No 432
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=28.38 E-value=2e+02 Score=28.39 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=11.9
Q ss_pred hhccCEEEEechhchHHHHHH
Q 022363 148 ALKADLIVLNTAVAGKWLDAV 168 (298)
Q Consensus 148 A~~aDLVIaNT~v~g~wl~~l 168 (298)
..++|.||+= -.|+.+|.-
T Consensus 104 ~~~~D~Iiav--GGGS~iD~A 122 (395)
T PRK15454 104 ESGCDGVIAF--GGGSVLDAA 122 (395)
T ss_pred hcCcCEEEEe--CChHHHHHH
Confidence 4689999873 345555533
No 433
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=28.35 E-value=4.3e+02 Score=23.52 Aligned_cols=81 Identities=17% Similarity=0.158 Sum_probs=44.4
Q ss_pred EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCc--ee-ehhchhHHHhhhccCE
Q 022363 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ--VI-SAKGQETINTALKADL 153 (298)
Q Consensus 77 ILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~--v~-~~k~~~~i~~A~~aDL 153 (298)
|++++ -++..-++-.+++++..|++.+.++.++...+|+..+.....+.+.+.+.+.. |. .....+.......+|+
T Consensus 188 i~~~G-r~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~ 266 (355)
T cd03819 188 ILLPG-RLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADI 266 (355)
T ss_pred EEEee-ccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCE
Confidence 44444 45566677788999999998765655554222332333323334444444432 22 1122233346778998
Q ss_pred EEEec
Q 022363 154 IVLNT 158 (298)
Q Consensus 154 VIaNT 158 (298)
.+.-+
T Consensus 267 ~i~ps 271 (355)
T cd03819 267 VVSAS 271 (355)
T ss_pred EEecC
Confidence 87755
No 434
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=28.29 E-value=94 Score=29.39 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceee
Q 022363 93 LMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS 138 (298)
Q Consensus 93 LleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~ 138 (298)
++.||+.|++.|++|.+.+.. ...+.+.+.|+..+.
T Consensus 12 ~l~lA~~L~~~Gh~V~~~~~~----------~~~~~v~~~G~~~~~ 47 (392)
T TIGR01426 12 TLGVVEELVARGHRVTYATTE----------EFAERVEAAGAEFVL 47 (392)
T ss_pred cHHHHHHHHhCCCeEEEEeCH----------HHHHHHHHcCCEEEe
No 435
>PRK12937 short chain dehydrogenase; Provisional
Probab=28.24 E-value=2.8e+02 Score=23.72 Aligned_cols=78 Identities=15% Similarity=0.123 Sum_probs=42.4
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee----ehhchhHHH--
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI----SAKGQETIN-- 146 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~----~~k~~~~i~-- 146 (298)
++|++|++. |+--+=.++|+.|.+.|+.+.++..+..+ ....+.+++...+-++. +-...+++.
T Consensus 4 ~~~~vlItG------~~~~iG~~la~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 73 (245)
T PRK12937 4 SNKVAIVTG------ASRGIGAAIARRLAADGFAVAVNYAGSAA----AADELVAEIEAAGGRAIAVQADVADAAAVTRL 73 (245)
T ss_pred CCCEEEEeC------CCchHHHHHHHHHHHCCCEEEEecCCCHH----HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 466666643 22336678999999999998766533221 11123444444332222 112222222
Q ss_pred ------hhhccCEEEEechh
Q 022363 147 ------TALKADLIVLNTAV 160 (298)
Q Consensus 147 ------~A~~aDLVIaNT~v 160 (298)
....+|.||.|..+
T Consensus 74 ~~~~~~~~~~id~vi~~ag~ 93 (245)
T PRK12937 74 FDAAETAFGRIDVLVNNAGV 93 (245)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 12478999999765
No 436
>PRK06841 short chain dehydrogenase; Provisional
Probab=28.24 E-value=3.9e+02 Score=23.13 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=23.7
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (298)
+++|++|++. -+| -+=.++|+.|.+.|++|.++.
T Consensus 13 ~~~k~vlItG----as~--~IG~~la~~l~~~G~~Vi~~~ 46 (255)
T PRK06841 13 LSGKVAVVTG----GAS--GIGHAIAELFAAKGARVALLD 46 (255)
T ss_pred CCCCEEEEEC----CCC--hHHHHHHHHHHHCCCEEEEEe
Confidence 4677766652 223 255788999999999977665
No 437
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=28.18 E-value=4.1e+02 Score=24.05 Aligned_cols=78 Identities=12% Similarity=0.116 Sum_probs=38.4
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCc-eeehhchhHHHhhhccCE
Q 022363 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ-VISAKGQETINTALKADL 153 (298)
Q Consensus 75 KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~-v~~~k~~~~i~~A~~aDL 153 (298)
+.|++++.-...-|-.-++.+.+..|...+..+.++++. + +. ..|++...+.++. ++.-.....-+....+|+
T Consensus 180 ~~i~~~gg~~~~~~~~~~l~~a~~~l~~~~~~~~~~~g~-~----~~-~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~ 253 (348)
T TIGR01133 180 PTILVLGGSQGAKILNELVPKALAKLAEKGIQIVHQTGK-N----DL-EKVKNVYQELGIEAIVTFIDENMAAAYAAADL 253 (348)
T ss_pred eEEEEECCchhHHHHHHHHHHHHHHHhhcCcEEEEECCc-c----hH-HHHHHHHhhCCceEEecCcccCHHHHHHhCCE
Confidence 345566542221121223457777777666556544432 2 11 2345555555642 221112222346779999
Q ss_pred EEEec
Q 022363 154 IVLNT 158 (298)
Q Consensus 154 VIaNT 158 (298)
+|...
T Consensus 254 ~v~~~ 258 (348)
T TIGR01133 254 VISRA 258 (348)
T ss_pred EEECC
Confidence 99864
No 438
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=27.98 E-value=97 Score=27.37 Aligned_cols=36 Identities=28% Similarity=0.233 Sum_probs=21.8
Q ss_pred EEEEEeccC-CCCCc--hHHHHHHHHHHH-hCCCeEEEEe
Q 022363 76 LVLLVSHEL-SLSGG--PLLLMELAFLLR-GVGTKVNWIT 111 (298)
Q Consensus 76 kILLISHEL-S~TGA--PLlLleLA~~Lk-q~G~~V~vL~ 111 (298)
|||+|+... ..-.. |-..--|+.+|+ +.|++|.+.-
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~ 40 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTE 40 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEe
Confidence 578887772 32333 456666677777 6677777655
No 439
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=27.89 E-value=1e+02 Score=24.97 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCEEEEE
Q 022363 240 SKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI 275 (298)
Q Consensus 240 s~~L~~~a~~~va~~~lre~VR~~lGl~~ddvlv~~ 275 (298)
+.+..+ .+.++ +-+.+.+.||+|+|++.|-.
T Consensus 70 ~~e~k~----~l~~~-i~~~l~~~lgi~~~rv~I~f 100 (116)
T PTZ00397 70 SRSNNS----SIAAA-ITKILASHLKVKSERVYIEF 100 (116)
T ss_pred CHHHHH----HHHHH-HHHHHHHHhCcCcccEEEEE
Confidence 445555 67776 88889999999999998754
No 440
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.75 E-value=3.1e+02 Score=23.62 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=17.1
Q ss_pred hhccCEEEEechh-chHHHHHHhhccCCCCCCceEEE
Q 022363 148 ALKADLIVLNTAV-AGKWLDAVLKEDVPRVLPNVLWW 183 (298)
Q Consensus 148 A~~aDLVIaNT~v-~g~wl~~l~~~~~p~~~~pVIWW 183 (298)
..++|.||+.... ....++.+.+.++ |+|..
T Consensus 53 ~~~~dgiii~~~~~~~~~~~~~~~~~i-----pvV~i 84 (270)
T cd06296 53 ARRTDGVILVTPELTSAQRAALRRTGI-----PFVVV 84 (270)
T ss_pred HcCCCEEEEecCCCChHHHHHHhcCCC-----CEEEE
Confidence 4567877665432 3455666554444 66654
No 441
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=27.50 E-value=1.7e+02 Score=26.63 Aligned_cols=80 Identities=11% Similarity=0.059 Sum_probs=50.0
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc-CCceeehhchhHHH-----hhhccCEEEEechh
Q 022363 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISAKGQETIN-----TALKADLIVLNTAV 160 (298)
Q Consensus 87 TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~r-gI~v~~~k~~~~i~-----~A~~aDLVIaNT~v 160 (298)
+|-|+ ++|+.+++.|++-..+..=.+..+.+....+.+++.+. ++|+.-.-|.++++ ....+|-||+||.+
T Consensus 34 ~~dp~---~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~ 110 (233)
T cd04723 34 TSDPL---DVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTET 110 (233)
T ss_pred CCCHH---HHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEccee
Confidence 45664 68999999999855555222222333334556666654 77887775655554 23468999999987
Q ss_pred ch-HHHHHHh
Q 022363 161 AG-KWLDAVL 169 (298)
Q Consensus 161 ~g-~wl~~l~ 169 (298)
.- .++.+..
T Consensus 111 ~~~~~~~~~~ 120 (233)
T cd04723 111 LPSDDDEDRL 120 (233)
T ss_pred ccchHHHHHH
Confidence 43 3555554
No 442
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=27.32 E-value=1.3e+02 Score=28.85 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=51.4
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhch-hHHH------
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-ETIN------ 146 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~-~~i~------ 146 (298)
|||+|+|+...+..+ ..=.+...|++.|.++.+...-.|+..-+.+.-..+.+.+.+..++-.-|= ..++
T Consensus 22 ~~r~liv~d~~~~~~---~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia 98 (345)
T cd08171 22 GKKVVVIGGKTALAA---AKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGGKAIDTVKVLA 98 (345)
T ss_pred CCEEEEEeCHHHHHH---HHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHH
Confidence 589999987655532 244566788888998876665555555555555556666666666654221 1122
Q ss_pred hhhccCEEEEechh
Q 022363 147 TALKADLIVLNTAV 160 (298)
Q Consensus 147 ~A~~aDLVIaNT~v 160 (298)
......+|.+.|..
T Consensus 99 ~~~~~p~i~VPTt~ 112 (345)
T cd08171 99 DKLGKPVFTFPTIA 112 (345)
T ss_pred HHcCCCEEEecCcc
Confidence 22356788888764
No 443
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=27.22 E-value=2.4e+02 Score=26.81 Aligned_cols=87 Identities=18% Similarity=0.103 Sum_probs=50.1
Q ss_pred cEEEEEeccCCCC----CchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc-CCc--eeehhchhHHH-
Q 022363 75 KLVLLVSHELSLS----GGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQ--VISAKGQETIN- 146 (298)
Q Consensus 75 KkILLISHELS~T----GAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~r-gI~--v~~~k~~~~i~- 146 (298)
|+.+++.|..+.. -----.-++++.|.+.|..|++..+. ++-+. .+++.+. +-. +.......++-
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~---~e~e~----~~~i~~~~~~~~~l~~k~sL~e~~~ 247 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGP---DEEER----AEEIAKGLPNAVILAGKTSLEELAA 247 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecCh---HHHHH----HHHHHHhcCCccccCCCCCHHHHHH
Confidence 5789999984442 23346789999999999555555433 12222 3444433 111 23333333332
Q ss_pred hhhccCEEEEechhchHHHHHH
Q 022363 147 TALKADLIVLNTAVAGKWLDAV 168 (298)
Q Consensus 147 ~A~~aDLVIaNT~v~g~wl~~l 168 (298)
....+|+||.|=-.-.+.-..+
T Consensus 248 li~~a~l~I~~DSg~~HlAaA~ 269 (334)
T COG0859 248 LIAGADLVIGNDSGPMHLAAAL 269 (334)
T ss_pred HHhcCCEEEccCChHHHHHHHc
Confidence 4569999999977554444433
No 444
>PRK08643 acetoin reductase; Validated
Probab=27.21 E-value=4.2e+02 Score=23.03 Aligned_cols=76 Identities=18% Similarity=0.237 Sum_probs=39.7
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--ee-h-hchhH----H
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--IS-A-KGQET----I 145 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v--~~-~-k~~~~----i 145 (298)
+|++|+++ .+|+ +=.++++.|.+.|++|+++..+.. -...+.+++.+.+..+ +. | ...++ +
T Consensus 2 ~k~~lItG----as~g--iG~~la~~l~~~G~~v~~~~r~~~-----~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 70 (256)
T PRK08643 2 SKVALVTG----AGQG--IGFAIAKRLVEDGFKVAIVDYNEE-----TAQAAADKLSKDGGKAIAVKADVSDRDQVFAAV 70 (256)
T ss_pred CCEEEEEC----CCCh--HHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 56555553 2222 445788889999999877763321 1112344444433222 21 1 22222 2
Q ss_pred Hh----hhccCEEEEechh
Q 022363 146 NT----ALKADLIVLNTAV 160 (298)
Q Consensus 146 ~~----A~~aDLVIaNT~v 160 (298)
+. ..++|.||.|...
T Consensus 71 ~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 71 RQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 21 2468999988754
No 445
>PRK05872 short chain dehydrogenase; Provisional
Probab=27.19 E-value=3.3e+02 Score=24.87 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=24.8
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (298)
++||++|+.. .+|+ +=.++|+.|.+.|++|.++.
T Consensus 7 l~gk~vlItG----as~g--IG~~ia~~l~~~G~~V~~~~ 40 (296)
T PRK05872 7 LAGKVVVVTG----AARG--IGAELARRLHARGAKLALVD 40 (296)
T ss_pred CCCCEEEEEC----CCch--HHHHHHHHHHHCCCEEEEEe
Confidence 6788877653 2232 56788999999999987765
No 446
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.14 E-value=4.4e+02 Score=23.33 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=20.8
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 022363 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (298)
Q Consensus 76 kILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (298)
+|-+|.=+++...-.-++-.+...+++.|+++.+...
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~~gy~~~~~~~ 38 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKAIGWNLRILDG 38 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHHcCcEEEEECC
Confidence 4444443443333334455556777888888766653
No 447
>PRK05854 short chain dehydrogenase; Provisional
Probab=27.14 E-value=2.2e+02 Score=26.44 Aligned_cols=36 Identities=22% Similarity=0.125 Sum_probs=25.6
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (298)
.-++||++|+.. -+| =+=.++|+.|.+.|+.|.++.
T Consensus 10 ~~l~gk~~lITG----as~--GIG~~~a~~La~~G~~Vil~~ 45 (313)
T PRK05854 10 PDLSGKRAVVTG----ASD--GLGLGLARRLAAAGAEVILPV 45 (313)
T ss_pred cccCCCEEEEeC----CCC--hHHHHHHHHHHHCCCEEEEEe
Confidence 347888776552 222 266799999999999987765
No 448
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=27.00 E-value=3.7e+02 Score=22.40 Aligned_cols=76 Identities=21% Similarity=0.172 Sum_probs=42.0
Q ss_pred CCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhch--------hHHH--hhhccCEE
Q 022363 85 SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ--------ETIN--TALKADLI 154 (298)
Q Consensus 85 S~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~--------~~i~--~A~~aDLV 154 (298)
..+|-.-+...++..+.+.|..|.++.+..- ......-+.....+.|+++...... +.+. ...++|+|
T Consensus 9 ~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 86 (173)
T cd03115 9 QGVGKTTTAAKLALYLKKKGKKVLLVAADTY--RPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREENFDVV 86 (173)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC--ChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 4567777888888888887877777663321 1111011122222336666643110 1122 24588999
Q ss_pred EEechhch
Q 022363 155 VLNTAVAG 162 (298)
Q Consensus 155 IaNT~v~g 162 (298)
|..|.-..
T Consensus 87 iiDt~g~~ 94 (173)
T cd03115 87 IVDTAGRL 94 (173)
T ss_pred EEECcccc
Confidence 99998664
No 449
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=26.82 E-value=2.4e+02 Score=24.94 Aligned_cols=70 Identities=21% Similarity=0.217 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHhCCCeEEEEe--ccCCCCchhhhhhhHHHHHHc-CCceeehhchhHH---H--hhhccCEEEEechh
Q 022363 90 PLLLMELAFLLRGVGTKVNWIT--IQKPSEEDEVIYSLEHKMWDR-GVQVISAKGQETI---N--TALKADLIVLNTAV 160 (298)
Q Consensus 90 PLlLleLA~~Lkq~G~~V~vL~--~~~G~~~g~v~~~L~~kll~r-gI~v~~~k~~~~i---~--~A~~aDLVIaNT~v 160 (298)
+.-..++++.+.+.|..-.+++ .+.|...+. ...+..++.++ .+|++-.-+..+. . ....+|-|+++|+.
T Consensus 144 ~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g~-~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~ 221 (230)
T TIGR00007 144 EVSLEELAKRLEELGLEGIIYTDISRDGTLSGP-NFELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIVGKAL 221 (230)
T ss_pred CCCHHHHHHHHHhCCCCEEEEEeecCCCCcCCC-CHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHH
Confidence 4566799999999999855555 333333332 23444555554 7888866433332 2 23579999999986
No 450
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=26.80 E-value=2e+02 Score=26.76 Aligned_cols=46 Identities=20% Similarity=0.368 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee
Q 022363 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI 137 (298)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~ 137 (298)
.|=+.|..|++.|++|.-+...+....+.+...|...+.+.|+.-+
T Consensus 50 aMRhfa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~ 95 (224)
T PF04244_consen 50 AMRHFADELRAKGFRVHYIELDDPENTQSFEDALARALKQHGIDRL 95 (224)
T ss_dssp HHHHHHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH----E
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcCCCEE
Confidence 5678899999999999999977655455777778888877777666
No 451
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=26.79 E-value=1.5e+02 Score=28.00 Aligned_cols=84 Identities=11% Similarity=0.031 Sum_probs=43.8
Q ss_pred cEEEEEeccCCCCC--chH-HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc--CCceeehhchhHHH---
Q 022363 75 KLVLLVSHELSLSG--GPL-LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR--GVQVISAKGQETIN--- 146 (298)
Q Consensus 75 KkILLISHELS~TG--APL-lLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~r--gI~v~~~k~~~~i~--- 146 (298)
++++.|..-.+... =|. -..++++.|.+.|..++++.+.+ +.+. ...+++.+. .-+++.--+.-++.
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~---e~e~--~~~~~i~~~~~~~~~~~l~g~~sL~el~ 257 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPD---KDDL--ACVNEIAQGCQTPPVTALAGKTTFPELG 257 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCC---hHHH--HHHHHHHHhcCCCccccccCCCCHHHHH
Confidence 45666654332211 122 45689999988899888775321 2222 122444442 12233222222232
Q ss_pred -hhhccCEEEEechhchH
Q 022363 147 -TALKADLIVLNTAVAGK 163 (298)
Q Consensus 147 -~A~~aDLVIaNT~v~g~ 163 (298)
....+|++|.|=-.-.+
T Consensus 258 ali~~a~l~v~nDSGp~H 275 (352)
T PRK10422 258 ALIDHAQLFIGVDSAPAH 275 (352)
T ss_pred HHHHhCCEEEecCCHHHH
Confidence 56799999999654333
No 452
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=26.76 E-value=1.6e+02 Score=26.54 Aligned_cols=79 Identities=25% Similarity=0.243 Sum_probs=43.7
Q ss_pred cEEEEEeccCCCC--Cch-HHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc--CCceeehhch----hHH
Q 022363 75 KLVLLVSHELSLS--GGP-LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR--GVQVISAKGQ----ETI 145 (298)
Q Consensus 75 KkILLISHELS~T--GAP-LlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~r--gI~v~~~k~~----~~i 145 (298)
++.+++..-.+.. .=| =-..++++.|.+.|.+++++.+. ++.+. .+++.+. +.+++.-.+. +.+
T Consensus 121 ~~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~---~e~~~----~~~i~~~~~~~~~~~~~~~~~l~e~~ 193 (279)
T cd03789 121 KPVVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGP---AEREL----AEEIAAALGGPRVVNLAGKTSLRELA 193 (279)
T ss_pred CCEEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEech---hhHHH----HHHHHHhcCCCccccCcCCCCHHHHH
Confidence 4456665544433 223 26789999999889988876522 12222 2334332 1222222222 223
Q ss_pred HhhhccCEEEEe-chh
Q 022363 146 NTALKADLIVLN-TAV 160 (298)
Q Consensus 146 ~~A~~aDLVIaN-T~v 160 (298)
....++|++|.| |..
T Consensus 194 ~li~~~~l~I~~Dsg~ 209 (279)
T cd03789 194 ALLARADLVVTNDSGP 209 (279)
T ss_pred HHHHhCCEEEeeCCHH
Confidence 357799999999 653
No 453
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=26.72 E-value=1.7e+02 Score=26.93 Aligned_cols=75 Identities=21% Similarity=0.225 Sum_probs=50.8
Q ss_pred CchHHHHHHHHHHHhCCCeEEEEeccCCC--Cc--hhhhhhhHHHHHHcCCceeehhchhHHH----------------h
Q 022363 88 GGPLLLMELAFLLRGVGTKVNWITIQKPS--EE--DEVIYSLEHKMWDRGVQVISAKGQETIN----------------T 147 (298)
Q Consensus 88 GAPLlLleLA~~Lkq~G~~V~vL~~~~G~--~~--g~v~~~L~~kll~rgI~v~~~k~~~~i~----------------~ 147 (298)
|+-...+++|..|++.|.+|.++-..... .- .++...+.+.+.++||.+........+. .
T Consensus 143 G~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 222 (415)
T COG0446 143 GAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGE 222 (415)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCc
Confidence 67778899999999999999888833222 11 3556667777777788775442211111 1
Q ss_pred hhccCEEEEechhch
Q 022363 148 ALKADLIVLNTAVAG 162 (298)
Q Consensus 148 A~~aDLVIaNT~v~g 162 (298)
-..+|+++.-+....
T Consensus 223 ~~~~d~~~~~~g~~p 237 (415)
T COG0446 223 EIKADLVIIGPGERP 237 (415)
T ss_pred EEEeeEEEEeecccc
Confidence 236999999888776
No 454
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=26.67 E-value=3.6e+02 Score=23.11 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=24.6
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (298)
+++|++|+.+ |..-+=.++++.|.+.|++|.++.
T Consensus 1 ~~~~~ilItG------as~~iG~~la~~l~~~g~~v~~~~ 34 (250)
T TIGR03206 1 LKDKTAIVTG------GGGGIGGATCRRFAEEGAKVAVFD 34 (250)
T ss_pred CCCCEEEEeC------CCChHHHHHHHHHHHCCCEEEEec
Confidence 4678777764 222366788999999999987765
No 455
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=26.62 E-value=83 Score=29.50 Aligned_cols=41 Identities=10% Similarity=0.031 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce
Q 022363 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV 136 (298)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v 136 (298)
-.+++.+.|++.|+.|++++++... .-...++.|.+.|.+.
T Consensus 124 ~al~l~~~l~~~G~~Vf~lTGR~e~----~r~~T~~nL~~~G~~~ 164 (229)
T TIGR01675 124 EGLKLYQKIIELGIKIFLLSGRWEE----LRNATLDNLINAGFTG 164 (229)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCChH----HHHHHHHHHHHcCCCC
Confidence 3678999999999999999988642 1123456677778774
No 456
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=26.55 E-value=82 Score=28.99 Aligned_cols=64 Identities=22% Similarity=0.318 Sum_probs=37.6
Q ss_pred HHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhccCEEEEechhc--hHHHHHHh
Q 022363 96 LAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVA--GKWLDAVL 169 (298)
Q Consensus 96 LA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~aDLVIaNT~v~--g~wl~~l~ 169 (298)
+|+.||+.|.++.+......+ .-.++.++.|+---.. .. .+...++|+||+.|=+. ..+++++.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~-------~~~~~a~~~g~~~~~~--~~-~~~~~~~DlvvlavP~~~~~~~l~~~~ 66 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDP-------ETLEAALELGIIDEAS--TD-IEAVEDADLVVLAVPVSAIEDVLEEIA 66 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSH-------HHHHHHHHTTSSSEEE--SH-HHHGGCCSEEEE-S-HHHHHHHHHHHH
T ss_pred ChHHHHhCCCCeEEEEEeCCH-------HHHHHHHHCCCeeecc--CC-HhHhcCCCEEEEcCCHHHHHHHHHHhh
Confidence 689999999887777744321 1234444555544332 21 44578899999998764 44555554
No 457
>PRK05920 aromatic acid decarboxylase; Validated
Probab=26.53 E-value=94 Score=28.57 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=29.3
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (298)
++|+|++- .+.+.|-+-..++++.|++.|++|.++..+..
T Consensus 2 ~~krIllg---ITGsiaa~ka~~lvr~L~~~g~~V~vi~T~~A 41 (204)
T PRK05920 2 KMKRIVLA---ITGASGAIYGVRLLECLLAADYEVHLVISKAA 41 (204)
T ss_pred CCCEEEEE---EeCHHHHHHHHHHHHHHHHCCCEEEEEEChhH
Confidence 35666654 33443446788999999999999999996653
No 458
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=26.46 E-value=1.7e+02 Score=28.00 Aligned_cols=74 Identities=15% Similarity=0.296 Sum_probs=39.5
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhH--HH--h
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQET--IN--T 147 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~--i~--~ 147 (298)
..||+||+|+ |=++|. ||--|.....+|+|+=. +..++.++.+...+.|+++-...+.-. +. .
T Consensus 43 L~gk~il~lG-DDDLtS-------lA~al~~~~~~I~VvDi-----DeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~ 109 (243)
T PF01861_consen 43 LEGKRILFLG-DDDLTS-------LALALTGLPKRITVVDI-----DERLLDFINRVAEEEGLPIEAVHYDLRDPLPEEL 109 (243)
T ss_dssp STT-EEEEES--TT-HH-------HHHHHHT--SEEEEE-S------HHHHHHHHHHHHHHT--EEEE---TTS---TTT
T ss_pred ccCCEEEEEc-CCcHHH-------HHHHhhCCCCeEEEEEc-----CHHHHHHHHHHHHHcCCceEEEEecccccCCHHH
Confidence 5799999999 445444 33334555667776652 356777777777788998655544433 33 4
Q ss_pred hhccCEEEEec
Q 022363 148 ALKADLIVLNT 158 (298)
Q Consensus 148 A~~aDLVIaNT 158 (298)
..+||.++.+=
T Consensus 110 ~~~fD~f~TDP 120 (243)
T PF01861_consen 110 RGKFDVFFTDP 120 (243)
T ss_dssp SS-BSEEEE--
T ss_pred hcCCCEEEeCC
Confidence 67999999984
No 459
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=26.22 E-value=2.6e+02 Score=24.66 Aligned_cols=77 Identities=12% Similarity=0.088 Sum_probs=47.0
Q ss_pred HHHHHHHHHhCCCeEEEEeccCCCC-chhhhhhhHHHHHHc-CCceeehhchhHHH-----hhhccCEEEEechhchH--
Q 022363 93 LMELAFLLRGVGTKVNWITIQKPSE-EDEVIYSLEHKMWDR-GVQVISAKGQETIN-----TALKADLIVLNTAVAGK-- 163 (298)
Q Consensus 93 LleLA~~Lkq~G~~V~vL~~~~G~~-~g~v~~~L~~kll~r-gI~v~~~k~~~~i~-----~A~~aDLVIaNT~v~g~-- 163 (298)
..++|+.+.+.|.+-..++.-+|.. +......+.+++.+. ++|+.-.-+.++.+ ....+|.|+++|...-.
T Consensus 32 ~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~~~~ 111 (233)
T PRK00748 32 PVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVKNPE 111 (233)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHhCHH
Confidence 3578888999998766666433321 222223455555554 77887664444433 23469999999987543
Q ss_pred HHHHHh
Q 022363 164 WLDAVL 169 (298)
Q Consensus 164 wl~~l~ 169 (298)
++.++.
T Consensus 112 ~l~ei~ 117 (233)
T PRK00748 112 LVKEAC 117 (233)
T ss_pred HHHHHH
Confidence 455554
No 460
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.10 E-value=1.7e+02 Score=25.02 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=25.0
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (298)
+++||++|+.. .+| -+=.++++.|.+.|++|.++..
T Consensus 2 ~l~~k~~lVtG----as~--~iG~~ia~~l~~~G~~v~~~~r 37 (235)
T PRK06550 2 EFMTKTVLITG----AAS--GIGLAQARAFLAQGAQVYGVDK 37 (235)
T ss_pred CCCCCEEEEcC----CCc--hHHHHHHHHHHHCCCEEEEEeC
Confidence 36788777652 233 2556788999999999877653
No 461
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=25.96 E-value=3.8e+02 Score=23.31 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=43.5
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee----ehhchhHHH-
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI----SAKGQETIN- 146 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~----~~k~~~~i~- 146 (298)
+++|++|+++ -+| =+=.++++.|.+.|++|++...+ .+ . ...+.+++.+.+..+. +-....++.
T Consensus 7 l~~k~~lItG----as~--giG~~ia~~L~~~G~~vvl~~r~-~~---~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~ 75 (254)
T PRK08085 7 LAGKNILITG----SAQ--GIGFLLATGLAEYGAEIIINDIT-AE---R-AELAVAKLRQEGIKAHAAPFNVTHKQEVEA 75 (254)
T ss_pred CCCCEEEEEC----CCC--hHHHHHHHHHHHcCCEEEEEcCC-HH---H-HHHHHHHHHhcCCeEEEEecCCCCHHHHHH
Confidence 4678776663 222 25568888999999998876533 21 1 1233455554443332 112222222
Q ss_pred -------hhhccCEEEEechh
Q 022363 147 -------TALKADLIVLNTAV 160 (298)
Q Consensus 147 -------~A~~aDLVIaNT~v 160 (298)
....+|.||.|...
T Consensus 76 ~~~~~~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 76 AIEHIEKDIGPIDVLINNAGI 96 (254)
T ss_pred HHHHHHHhcCCCCEEEECCCc
Confidence 12468999998864
No 462
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.81 E-value=2.1e+02 Score=22.40 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=13.3
Q ss_pred hhhccCEEEEechhchHHH
Q 022363 147 TALKADLIVLNTAVAGKWL 165 (298)
Q Consensus 147 ~A~~aDLVIaNT~v~g~wl 165 (298)
...++|+||.-|-...+-.
T Consensus 45 ~i~~aD~VIv~t~~vsH~~ 63 (97)
T PF10087_consen 45 KIKKADLVIVFTDYVSHNA 63 (97)
T ss_pred hcCCCCEEEEEeCCcChHH
Confidence 4668899988886654433
No 463
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=25.75 E-value=1.3e+02 Score=22.82 Aligned_cols=34 Identities=24% Similarity=0.223 Sum_probs=27.9
Q ss_pred EEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 022363 78 LLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (298)
Q Consensus 78 LLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (298)
+.+...-+..|.+.+-.+||..|.+.|.+|.++-
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d 35 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLID 35 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 4556666788999999999999998898887775
No 464
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=25.63 E-value=3.7e+02 Score=23.59 Aligned_cols=79 Identities=15% Similarity=0.152 Sum_probs=44.3
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee----ehhchhHHH-
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI----SAKGQETIN- 146 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~----~~k~~~~i~- 146 (298)
+++|++|+++ |+--+=.++++.|.+.|+.+++...... +-...+.+++.+.+-++. +-...+++.
T Consensus 5 ~~~k~~lItG------a~~gIG~~ia~~l~~~G~~vvi~~~~~~----~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~ 74 (261)
T PRK08936 5 LEGKVVVITG------GSTGLGRAMAVRFGKEKAKVVINYRSDE----EEANDVAEEIKKAGGEAIAVKGDVTVESDVVN 74 (261)
T ss_pred CCCCEEEEeC------CCChHHHHHHHHHHHCCCEEEEEeCCCH----HHHHHHHHHHHHcCCeEEEEEecCCCHHHHHH
Confidence 5788777653 2223567889999999999877653221 111234555555443322 112222222
Q ss_pred -------hhhccCEEEEechh
Q 022363 147 -------TALKADLIVLNTAV 160 (298)
Q Consensus 147 -------~A~~aDLVIaNT~v 160 (298)
....+|.+|.|...
T Consensus 75 ~~~~~~~~~g~id~lv~~ag~ 95 (261)
T PRK08936 75 LIQTAVKEFGTLDVMINNAGI 95 (261)
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 12468999988764
No 465
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=25.62 E-value=3.6e+02 Score=23.78 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=42.3
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--e--ehhchhHHH-
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--I--SAKGQETIN- 146 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v--~--~~k~~~~i~- 146 (298)
++||++|+.. |+.=+=..+|+.|.+.|++|+++..+ .. ..+++++...+.++ + +-...++++
T Consensus 6 l~~k~~lItG------as~gIG~aia~~l~~~G~~vv~~~~~-~~------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 72 (251)
T PRK12481 6 LNGKVAIITG------CNTGLGQGMAIGLAKAGADIVGVGVA-EA------PETQAQVEALGRKFHFITADLIQQKDIDS 72 (251)
T ss_pred cCCCEEEEeC------CCchHHHHHHHHHHHCCCEEEEecCc-hH------HHHHHHHHHcCCeEEEEEeCCCCHHHHHH
Confidence 5677766543 22236678899999999998776432 21 12344554444332 2 112222222
Q ss_pred -------hhhccCEEEEechh
Q 022363 147 -------TALKADLIVLNTAV 160 (298)
Q Consensus 147 -------~A~~aDLVIaNT~v 160 (298)
....+|.+|.|..+
T Consensus 73 ~~~~~~~~~g~iD~lv~~ag~ 93 (251)
T PRK12481 73 IVSQAVEVMGHIDILINNAGI 93 (251)
T ss_pred HHHHHHHHcCCCCEEEECCCc
Confidence 23468999888654
No 466
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=25.54 E-value=3.7e+02 Score=25.77 Aligned_cols=69 Identities=22% Similarity=0.242 Sum_probs=40.3
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhC--CCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh------h--chhH
Q 022363 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA------K--GQET 144 (298)
Q Consensus 75 KkILLISHELS~TGAPLlLleLA~~Lkq~--G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~------k--~~~~ 144 (298)
|-++|+|+. |. -|-.|....++. ++++.++.+.+++ +.....+.|||++.- + ....
T Consensus 91 ri~vl~Sg~----g~--nl~al~~~~~~~~~~~~i~~visn~~~--------~~~lA~~~gIp~~~~~~~~~~~~~~~~~ 156 (286)
T PRK13011 91 KVLIMVSKF----DH--CLNDLLYRWRIGELPMDIVGVVSNHPD--------LEPLAAWHGIPFHHFPITPDTKPQQEAQ 156 (286)
T ss_pred eEEEEEcCC----cc--cHHHHHHHHHcCCCCcEEEEEEECCcc--------HHHHHHHhCCCEEEeCCCcCchhhhHHH
Confidence 788899983 55 334444444443 6788887765542 334466669998741 1 1111
Q ss_pred H-H--hhhccCEEEEe
Q 022363 145 I-N--TALKADLIVLN 157 (298)
Q Consensus 145 i-~--~A~~aDLVIaN 157 (298)
+ + ...++|+|++-
T Consensus 157 ~~~~l~~~~~Dlivla 172 (286)
T PRK13011 157 VLDVVEESGAELVVLA 172 (286)
T ss_pred HHHHHHHhCcCEEEEe
Confidence 1 1 24589998864
No 467
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=25.23 E-value=2.4e+02 Score=26.00 Aligned_cols=79 Identities=16% Similarity=0.109 Sum_probs=48.0
Q ss_pred CchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc-CCceeehhchhHHH-----hhhccCEEEEechhc
Q 022363 88 GGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISAKGQETIN-----TALKADLIVLNTAVA 161 (298)
Q Consensus 88 GAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~r-gI~v~~~k~~~~i~-----~A~~aDLVIaNT~v~ 161 (298)
|-|+ ++|+.+.+.|++-.-+..=.+..+......+.+++.+. ..|+--.-|.++++ ....+|-|++||.+-
T Consensus 30 ~dP~---~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~ 106 (232)
T PRK13586 30 GNPI---EIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVF 106 (232)
T ss_pred CCHH---HHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhh
Confidence 5564 67888989999855555222222233334566777663 34666555555443 234799999999874
Q ss_pred --hHHHHHHh
Q 022363 162 --GKWLDAVL 169 (298)
Q Consensus 162 --g~wl~~l~ 169 (298)
-.+++++.
T Consensus 107 ~~p~~~~~~~ 116 (232)
T PRK13586 107 TNFNLFHDIV 116 (232)
T ss_pred CCHHHHHHHH
Confidence 45666655
No 468
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=25.13 E-value=2.6e+02 Score=25.53 Aligned_cols=80 Identities=18% Similarity=0.130 Sum_probs=40.7
Q ss_pred ccEEEEEeccCCC---CCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcC-----CceeehhchhHH
Q 022363 74 SKLVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRG-----VQVISAKGQETI 145 (298)
Q Consensus 74 ~KkILLISHELS~---TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rg-----I~v~~~k~~~~i 145 (298)
.+.+|+..|-... --..-.+++.++.+.+. ++.++...+++... .+++...+.+ +....-.....+
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~--~~~vi~~~~~~~~~----~l~~~~~~~~~~~~~v~~~~~~~~~~~ 271 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEE--DVPVVFPNHPRTRP----RIREAGLEFLGHHPNVLLISPLGYLYF 271 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhc--CCEEEEECCCChHH----HHHHHHHhhccCCCCEEEECCcCHHHH
Confidence 3456666675442 12344667777777654 45555433332222 2344444433 222222223344
Q ss_pred H-hhhccCEEEEech
Q 022363 146 N-TALKADLIVLNTA 159 (298)
Q Consensus 146 ~-~A~~aDLVIaNT~ 159 (298)
. ....+|++|.++-
T Consensus 272 ~~l~~~ad~~v~~Sg 286 (363)
T cd03786 272 LLLLKNADLVLTDSG 286 (363)
T ss_pred HHHHHcCcEEEEcCc
Confidence 4 3556999999985
No 469
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=25.11 E-value=2.3e+02 Score=28.70 Aligned_cols=58 Identities=24% Similarity=0.318 Sum_probs=39.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHH-cCCceeeh
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD-RGVQVISA 139 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~-rgI~v~~~ 139 (298)
..+|+|++| |+-..-+|+|..|.+.|.+|.++........+ ..+.+.+.+ +||++...
T Consensus 350 ~~~k~VvVi-------GgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~~---~~l~~~l~~~~gV~i~~~ 408 (515)
T TIGR03140 350 FKGKDVAVI-------GGGNSGIEAAIDLAGIVRHVTVLEFADELKAD---KVLQDKLKSLPNVDILTS 408 (515)
T ss_pred cCCCEEEEE-------CCcHHHHHHHHHHHhcCcEEEEEEeCCcCChh---HHHHHHHhcCCCCEEEEC
Confidence 356777777 55567899999999999999998743221111 124555555 48888765
No 470
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=24.97 E-value=1.5e+02 Score=27.56 Aligned_cols=76 Identities=16% Similarity=0.119 Sum_probs=42.9
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh-----------ch
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-----------GQ 142 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k-----------~~ 142 (298)
+|+|||. .+.+-|-+=..+|.+.|++ |++|.++..+... .++. ..-+....++..+. ..
T Consensus 19 ~k~Illg---VtGSIAAyk~~~lvr~L~~-g~~V~VvmT~~A~---~FI~---p~~l~~~~~v~td~~~~~~~~~~~~~~ 88 (209)
T PLN02496 19 KPRILLA---ASGSVAAIKFGNLCHCFSE-WAEVRAVVTKASL---HFID---RASLPKDVTLYTDEDEWSSWNKIGDSV 88 (209)
T ss_pred CCEEEEE---EeCHHHHHHHHHHHHHhcC-CCeEEEEEChhHh---hhcC---HHHcCCCCcEEeCcccccccccCCCCc
Confidence 5666654 2334455556788899985 9999888866542 2222 22222222344331 11
Q ss_pred hHHHhhhccCEEEEech
Q 022363 143 ETINTALKADLIVLNTA 159 (298)
Q Consensus 143 ~~i~~A~~aDLVIaNT~ 159 (298)
+-|+.+..+|++++-=+
T Consensus 89 ~HI~La~wAD~~vVaPa 105 (209)
T PLN02496 89 LHIELRRWADVMVIAPL 105 (209)
T ss_pred chhHhhhhhCEEEEEeC
Confidence 13456778999986433
No 471
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=24.91 E-value=3.7e+02 Score=22.96 Aligned_cols=80 Identities=19% Similarity=0.190 Sum_probs=0.0
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC--------------CchhhhhhhHHHHHHcCCceee
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS--------------EEDEVIYSLEHKMWDRGVQVIS 138 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~--------------~~g~v~~~L~~kll~rgI~v~~ 138 (298)
+.++|.+++.-.|. .+...++..|...|.++..+...... +...-+..+.++..++|++++.
T Consensus 32 ~a~~I~i~G~G~S~----~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~ 107 (179)
T cd05005 32 NAKRIFVYGAGRSG----LVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVL 107 (179)
T ss_pred hCCeEEEEecChhH----HHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEE
Q ss_pred hhchhHHHhhhccCEEEE
Q 022363 139 AKGQETINTALKADLIVL 156 (298)
Q Consensus 139 ~k~~~~i~~A~~aDLVIa 156 (298)
=.....-..+.-+|.++.
T Consensus 108 IT~~~~s~la~~ad~~l~ 125 (179)
T cd05005 108 ITSNPDSPLAKLADVVVV 125 (179)
T ss_pred EECCCCCchHHhCCEEEE
No 472
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.88 E-value=3.5e+02 Score=26.41 Aligned_cols=83 Identities=19% Similarity=0.201 Sum_probs=47.7
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchh--HHH-hhhccC
Q 022363 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE--TIN-TALKAD 152 (298)
Q Consensus 76 kILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~--~i~-~A~~aD 152 (298)
+|++|. ++.+|- ..|+.|.+.|++|.+.=.+.. +....+...+.+.|+.+....... .+. ...++|
T Consensus 2 ~v~viG--~G~sG~-----s~a~~l~~~G~~V~~~D~~~~----~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d 70 (459)
T PRK02705 2 IAHVIG--LGRSGI-----AAARLLKAQGWEVVVSDRNDS----PELLERQQELEQEGITVKLGKPLELESFQPWLDQPD 70 (459)
T ss_pred eEEEEc--cCHHHH-----HHHHHHHHCCCEEEEECCCCc----hhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCC
Confidence 355655 344443 358999999998765332221 112233456777899887542221 111 346799
Q ss_pred EEEEechhc--hHHHHHHh
Q 022363 153 LIVLNTAVA--GKWLDAVL 169 (298)
Q Consensus 153 LVIaNT~v~--g~wl~~l~ 169 (298)
+||....+. .+.+.+..
T Consensus 71 ~vv~s~gi~~~~~~~~~a~ 89 (459)
T PRK02705 71 LVVVSPGIPWDHPTLVELR 89 (459)
T ss_pred EEEECCCCCCCCHHHHHHH
Confidence 999987775 33444443
No 473
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=24.78 E-value=40 Score=32.17 Aligned_cols=14 Identities=50% Similarity=0.850 Sum_probs=12.4
Q ss_pred cccEEEEEeccCCC
Q 022363 73 KSKLVLLVSHELSL 86 (298)
Q Consensus 73 ~~KkILLISHELS~ 86 (298)
+||.||+||||++.
T Consensus 188 eg~tIl~vtHDL~~ 201 (254)
T COG1121 188 EGKTVLMVTHDLGL 201 (254)
T ss_pred CCCEEEEEeCCcHH
Confidence 39999999999974
No 474
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=24.77 E-value=3.8e+02 Score=26.49 Aligned_cols=95 Identities=22% Similarity=0.198 Sum_probs=55.4
Q ss_pred ccccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHh
Q 022363 68 PLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINT 147 (298)
Q Consensus 68 ~~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~ 147 (298)
.++-++||+|-+|. .| ..=-.+|.-|++.|.+|.+...+++ .-.++..+.|+.+.+. -+.
T Consensus 11 ~~~~L~gktIgIIG-----~G--smG~AlA~~L~~sG~~Vvv~~r~~~--------~s~~~A~~~G~~~~s~-----~ea 70 (330)
T PRK05479 11 DLSLIKGKKVAIIG-----YG--SQGHAHALNLRDSGVDVVVGLREGS--------KSWKKAEADGFEVLTV-----AEA 70 (330)
T ss_pred ChhhhCCCEEEEEe-----eH--HHHHHHHHHHHHCCCEEEEEECCch--------hhHHHHHHCCCeeCCH-----HHH
Confidence 46778999999995 23 2345678888999998876543322 1123444557765311 125
Q ss_pred hhccCEEEEechhc--hHHH-HHHhhccCCCC-CCceEEEeee
Q 022363 148 ALKADLIVLNTAVA--GKWL-DAVLKEDVPRV-LPNVLWWIHE 186 (298)
Q Consensus 148 A~~aDLVIaNT~v~--g~wl-~~l~~~~~p~~-~~pVIWWIHE 186 (298)
+.++|+|+.-+=-. ...+ +++. |.. ..++|..-|=
T Consensus 71 a~~ADVVvLaVPd~~~~~V~~~~I~----~~Lk~g~iL~~a~G 109 (330)
T PRK05479 71 AKWADVIMILLPDEVQAEVYEEEIE----PNLKEGAALAFAHG 109 (330)
T ss_pred HhcCCEEEEcCCHHHHHHHHHHHHH----hcCCCCCEEEECCC
Confidence 67899999876422 3333 3333 322 1256765554
No 475
>PRK06849 hypothetical protein; Provisional
Probab=24.66 E-value=2.7e+02 Score=26.76 Aligned_cols=35 Identities=31% Similarity=0.386 Sum_probs=26.9
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccC
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~ 114 (298)
.|+||+++ +|+| .-+++|+.|++.|++|+++...+
T Consensus 4 ~~~VLI~G-----~~~~-~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 4 KKTVLITG-----ARAP-AALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCEEEEeC-----CCcH-HHHHHHHHHHHCCCEEEEEeCCc
Confidence 47788773 3333 57899999999999999887553
No 476
>PRK07791 short chain dehydrogenase; Provisional
Probab=24.65 E-value=5.4e+02 Score=23.41 Aligned_cols=84 Identities=13% Similarity=0.172 Sum_probs=46.1
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC----CchhhhhhhHHHHHHcCCcee----ehhch
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS----EEDEVIYSLEHKMWDRGVQVI----SAKGQ 142 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~----~~g~v~~~L~~kll~rgI~v~----~~k~~ 142 (298)
++++|.+|+.. |+.=+=.++|+.|.+.|++|.++..+.+. ...+-...+.+++.+.|.++. +-...
T Consensus 3 ~l~~k~~lITG------as~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~ 76 (286)
T PRK07791 3 LLDGRVVIVTG------AGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADW 76 (286)
T ss_pred ccCCCEEEEEC------CCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCH
Confidence 56788777654 22225568888899999998877533210 011222334555655554432 11222
Q ss_pred hH----HH----hhhccCEEEEechh
Q 022363 143 ET----IN----TALKADLIVLNTAV 160 (298)
Q Consensus 143 ~~----i~----~A~~aDLVIaNT~v 160 (298)
++ ++ ....+|.+|.|..+
T Consensus 77 ~~v~~~~~~~~~~~g~id~lv~nAG~ 102 (286)
T PRK07791 77 DGAANLVDAAVETFGGLDVLVNNAGI 102 (286)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 22 22 23578999988764
No 477
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=24.60 E-value=2e+02 Score=22.85 Aligned_cols=53 Identities=30% Similarity=0.330 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHH----cCCceeehhchhHHHhhhccCEEEEech
Q 022363 93 LMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD----RGVQVISAKGQETINTALKADLIVLNTA 159 (298)
Q Consensus 93 LleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~----rgI~v~~~k~~~~i~~A~~aDLVIaNT~ 159 (298)
-+++++.|++.|.+|.+-= |- + -.....+ .+++..++. -.....+|.||++|-
T Consensus 19 ~~~l~~~L~~~g~~V~~~D---P~----v---~~~~~~~~~~~~~~~~~~~~----~~~~~~~D~vvl~t~ 75 (106)
T PF03720_consen 19 ALELIEELKERGAEVSVYD---PY----V---DEEEIKELGKLEGVEVCDDL----EEALKGADAVVLATD 75 (106)
T ss_dssp HHHHHHHHHHTT-EEEEE----TT----S---HHHHHHHHCHHHCEEEESSH----HHHHTTESEEEESS-
T ss_pred HHHHHHHHHHCCCEEEEEC---Cc----c---ChHHHHhhCCccceEEecCH----HHHhcCCCEEEEEec
Confidence 3688999999999866542 21 1 1112222 466666541 124579999999986
No 478
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=24.53 E-value=2.4e+02 Score=28.50 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=39.6
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHH-cCCceeeh
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD-RGVQVISA 139 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~-rgI~v~~~ 139 (298)
+.+||+|++|+ +--.-+|+|..|.+.|.+|.++....-...+ ..+.+++.+ .||+++..
T Consensus 348 ~~~gk~VvVVG-------gG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~---~~l~~~l~~~~gI~i~~~ 407 (517)
T PRK15317 348 LFKGKRVAVIG-------GGNSGVEAAIDLAGIVKHVTVLEFAPELKAD---QVLQDKLRSLPNVTIITN 407 (517)
T ss_pred hcCCCEEEEEC-------CCHHHHHHHHHHHhcCCEEEEEEECcccccc---HHHHHHHhcCCCcEEEEC
Confidence 35788999983 3346799999999999999998743221111 134556665 48888764
No 479
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=24.48 E-value=1.6e+02 Score=28.19 Aligned_cols=62 Identities=24% Similarity=0.192 Sum_probs=43.2
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh
Q 022363 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (298)
Q Consensus 76 kILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~ 139 (298)
|+++|+-. +....+ +.=.+...|++.|.++.+..+-.++...+.+.-..+.+.+.++.++-.
T Consensus 23 r~lvVt~~-~~~~~~-~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa 84 (366)
T PF00465_consen 23 RVLVVTDP-SLSKSG-LVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIA 84 (366)
T ss_dssp EEEEEEEH-HHHHHT-HHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEE
T ss_pred CEEEEECc-hHHhCc-cHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEE
Confidence 89999876 554444 667777888889999988886666656666666666776666666644
No 480
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=24.46 E-value=2.8e+02 Score=25.71 Aligned_cols=69 Identities=14% Similarity=0.098 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCC-CchhhhhhhHHHHHHc-CCceeehhchhHHH-----hhhccCEEEEechh
Q 022363 92 LLMELAFLLRGVGTKVNWITIQKPS-EEDEVIYSLEHKMWDR-GVQVISAKGQETIN-----TALKADLIVLNTAV 160 (298)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~-~~g~v~~~L~~kll~r-gI~v~~~k~~~~i~-----~A~~aDLVIaNT~v 160 (298)
=..++|+.+.+.|++-..++.=.+. ........+.+++.+. ++|+.-.-+.+++. ....+|-|++||..
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~ 106 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAA 106 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChHH
Confidence 3457899999999987777722222 1223334667777665 78887665555544 12368999999975
No 481
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=24.41 E-value=3.7e+02 Score=24.20 Aligned_cols=81 Identities=12% Similarity=0.041 Sum_probs=49.0
Q ss_pred HHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh----chhHHH------hhhccCEEEEech--h
Q 022363 93 LMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK----GQETIN------TALKADLIVLNTA--V 160 (298)
Q Consensus 93 LleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k----~~~~i~------~A~~aDLVIaNT~--v 160 (298)
...++.+|++.|.+-+.+.....+.+.+....+.+.+.+.|+++.... ....+. ...++|.|+.... -
T Consensus 122 ~~~~~~~l~~~~~~~v~~l~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~~~~~~pd~v~~~~~~~~ 201 (336)
T cd06360 122 AAPMGKYAADDGYKKVVTVAWDYAFGYEVVEGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIPDDVPDAVFVFFAGGD 201 (336)
T ss_pred HHHHHHHHHHcCCCeEEEEeccchhhHHHHHHHHHHHHHcCCEEEEEEecCCCCcchHHHHHHHHhcCCCEEEEeccccc
Confidence 445667788778764444433334455556677788888899987431 111222 2457899987533 3
Q ss_pred chHHHHHHhhccC
Q 022363 161 AGKWLDAVLKEDV 173 (298)
Q Consensus 161 ~g~wl~~l~~~~~ 173 (298)
+...++++.+..+
T Consensus 202 ~~~~~~~~~~~g~ 214 (336)
T cd06360 202 AIKFVKQYDAAGL 214 (336)
T ss_pred HHHHHHHHHHcCC
Confidence 4667788764444
No 482
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=24.34 E-value=4.3e+02 Score=23.22 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=24.6
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 022363 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (298)
Q Consensus 72 ~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (298)
+++|++|+.. |+.-+=.++++.|.+.|++|.++.
T Consensus 4 ~~~k~vlVtG------as~gIG~~ia~~l~~~G~~V~~~~ 37 (263)
T PRK06200 4 LHGQVALITG------GGSGIGRALVERFLAEGARVAVLE 37 (263)
T ss_pred CCCCEEEEeC------CCchHHHHHHHHHHHCCCEEEEEe
Confidence 5778777654 223355788999999999987765
No 483
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=24.29 E-value=2.9e+02 Score=25.13 Aligned_cols=19 Identities=5% Similarity=0.036 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhCCCeEEEE
Q 022363 92 LLMELAFLLRGVGTKVNWI 110 (298)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL 110 (298)
++-.+...+++.|+++.+.
T Consensus 85 l~~~i~~~~~~~g~~~~~~ 103 (327)
T PRK10339 85 IRHGIETQCEKLGIELTNC 103 (327)
T ss_pred HHHHHHHHHHHCCCEEEEe
Confidence 3445567788889887654
No 484
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=24.26 E-value=1.1e+02 Score=29.80 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce
Q 022363 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV 136 (298)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v 136 (298)
-.++|.++|++.|..|..++++.... -...++-|.+.|.+.
T Consensus 149 ~al~ly~~l~~~G~kIf~VSgR~e~~----r~aT~~NL~kaGy~~ 189 (275)
T TIGR01680 149 ETLKNYNKLVSLGFKIIFLSGRLKDK----QAVTEANLKKAGYHT 189 (275)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchhH----HHHHHHHHHHcCCCC
Confidence 46889999999999999999887532 123456677778864
No 485
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=24.22 E-value=2.8e+02 Score=25.79 Aligned_cols=35 Identities=31% Similarity=0.337 Sum_probs=26.6
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEE
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN 108 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~ 108 (298)
+.+|++||+| .|.=.||+ -+..++..+++.|.+|+
T Consensus 173 l~~G~rVLIV-DDvi~TG~--Tl~~~~~ll~~~ga~vv 207 (238)
T PRK08558 173 LKKGDRVLIV-DDIIRSGE--TQRALLDLARQAGADVV 207 (238)
T ss_pred cCCcCEEEEE-ecccccCH--HHHHHHHHHHHcCCEEE
Confidence 5689999988 56666777 45577788899998844
No 486
>PLN02828 formyltetrahydrofolate deformylase
Probab=24.20 E-value=5e+02 Score=24.94 Aligned_cols=75 Identities=13% Similarity=0.184 Sum_probs=43.7
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhC--CCeEEEEeccCCCCchhhhhhhHHHHHHcCCceee--h-----hchhH
Q 022363 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS--A-----KGQET 144 (298)
Q Consensus 74 ~KkILLISHELS~TGAPLlLleLA~~Lkq~--G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~--~-----k~~~~ 144 (298)
-|-++|+|.+-+ -|..|....++- ++++.++.++++...+ .++.+...+.|||+.. . +..+.
T Consensus 71 ~riavlvSg~g~------nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~---a~~~~~A~~~gIP~~~~~~~~~~~~e~~~ 141 (268)
T PLN02828 71 YKIAVLASKQDH------CLIDLLHRWQDGRLPVDITCVISNHERGPN---THVMRFLERHGIPYHYLPTTKENKREDEI 141 (268)
T ss_pred cEEEEEEcCCCh------hHHHHHHhhhcCCCCceEEEEEeCCCCCCC---chHHHHHHHcCCCEEEeCCCCCCCHHHHH
Confidence 367788875544 345555555553 4677777755532111 2557778888999872 1 11122
Q ss_pred HHhhhccCEEEEe
Q 022363 145 INTALKADLIVLN 157 (298)
Q Consensus 145 i~~A~~aDLVIaN 157 (298)
++...++|+|++-
T Consensus 142 ~~~l~~~DliVLA 154 (268)
T PLN02828 142 LELVKGTDFLVLA 154 (268)
T ss_pred HHHHhcCCEEEEe
Confidence 3444479998864
No 487
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=24.10 E-value=5.5e+02 Score=23.34 Aligned_cols=85 Identities=19% Similarity=0.206 Sum_probs=49.1
Q ss_pred HHHHHHHhCC---CeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh----chh----HHH--hhhccCEEEEechh-
Q 022363 95 ELAFLLRGVG---TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK----GQE----TIN--TALKADLIVLNTAV- 160 (298)
Q Consensus 95 eLA~~Lkq~G---~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k----~~~----~i~--~A~~aDLVIaNT~v- 160 (298)
-++.++++.| ..+.++. ...++.......+++.+.+.|+++.... +.. .+. ...++|.||..+-.
T Consensus 129 ~~~~~~~~~~~~~~~v~~v~-~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~i~~~~~~~ 207 (345)
T cd06338 129 SLLEMLVALDPRPKKVAILY-ADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAAGPDAVVVAGHFP 207 (345)
T ss_pred HHHHHHHhcCCCCceEEEEe-cCCcccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhcCCCEEEECCcch
Confidence 4556666654 4555555 3344455666777888888899887431 111 122 24579999887654
Q ss_pred -chHHHHHHhhccCCCCCCceEEE
Q 022363 161 -AGKWLDAVLKEDVPRVLPNVLWW 183 (298)
Q Consensus 161 -~g~wl~~l~~~~~p~~~~pVIWW 183 (298)
...+++++.+..+ .+|+++.
T Consensus 208 ~~~~~~~~~~~~g~---~~~~~~~ 228 (345)
T cd06338 208 DAVLLVRQMKELGY---NPKALYM 228 (345)
T ss_pred hHHHHHHHHHHcCC---CCCEEEE
Confidence 4566777753333 2355543
No 488
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=23.97 E-value=2.3e+02 Score=28.49 Aligned_cols=58 Identities=21% Similarity=0.239 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhH----HH-hhhccCEEEEechhc
Q 022363 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQET----IN-TALKADLIVLNTAVA 161 (298)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~----i~-~A~~aDLVIaNT~v~ 161 (298)
.=..+|+.|.+.|++|.++.+... . . ...|+...+-....+ +. ...++|.+|.|.+++
T Consensus 216 ~G~aiA~~l~~~Ga~V~~v~~~~~-----~----~---~~~~~~~~dv~~~~~~~~~v~~~~~~~DilI~~Aav~ 278 (399)
T PRK05579 216 MGYALARAAARRGADVTLVSGPVN-----L----P---TPAGVKRIDVESAQEMLDAVLAALPQADIFIMAAAVA 278 (399)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCcc-----c----c---CCCCcEEEccCCHHHHHHHHHHhcCCCCEEEEccccc
Confidence 557899999999999999874321 1 0 011333333222222 21 245799999998875
No 489
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=23.91 E-value=53 Score=27.46 Aligned_cols=12 Identities=42% Similarity=1.074 Sum_probs=6.3
Q ss_pred hhHHHHHHHHHH
Q 022363 16 RWILALLIMLSI 27 (298)
Q Consensus 16 ~~~~~~~~~~~~ 27 (298)
||.|++++++.+
T Consensus 1 RW~l~~iii~~i 12 (130)
T PF12273_consen 1 RWVLFAIIIVAI 12 (130)
T ss_pred CeeeHHHHHHHH
Confidence 566655544443
No 490
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=23.90 E-value=3.6e+02 Score=24.74 Aligned_cols=76 Identities=13% Similarity=0.158 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCCeEEEEeccCCCCch-hhhhhhHHHHHHc-CCceeehhchhHHH---h--hhccCEEEEechhc-hHH
Q 022363 93 LMELAFLLRGVGTKVNWITIQKPSEED-EVIYSLEHKMWDR-GVQVISAKGQETIN---T--ALKADLIVLNTAVA-GKW 164 (298)
Q Consensus 93 LleLA~~Lkq~G~~V~vL~~~~G~~~g-~v~~~L~~kll~r-gI~v~~~k~~~~i~---~--A~~aDLVIaNT~v~-g~w 164 (298)
..++|+.+.+. ++-..+...+|..+| .....+.+++.+. ++|+.-.=|.++++ . ...+|-||+||++. -.+
T Consensus 32 p~~~a~~~~~~-~~~l~ivDldga~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~~~~ 110 (228)
T PRK04128 32 PVEIALRFSEY-VDKIHVVDLDGAFEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFDLEF 110 (228)
T ss_pred HHHHHHHHHHh-CCEEEEEECcchhcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcCHHH
Confidence 44667777775 664444544444222 2334556666654 67777664444443 2 34799999999976 446
Q ss_pred HHHHh
Q 022363 165 LDAVL 169 (298)
Q Consensus 165 l~~l~ 169 (298)
++++.
T Consensus 111 l~~~~ 115 (228)
T PRK04128 111 LEKVT 115 (228)
T ss_pred HHHHH
Confidence 66665
No 491
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=23.88 E-value=1.8e+02 Score=26.69 Aligned_cols=69 Identities=13% Similarity=0.189 Sum_probs=41.8
Q ss_pred hccCEEEEechhchHH-HHHHhhccCCCCCCceEEEeeeccccccc------cc-----cccccccccccccccHHHHHH
Q 022363 149 LKADLIVLNTAVAGKW-LDAVLKEDVPRVLPNVLWWIHEMRGHYFK------LD-----YVKHLPLVAGAMIDSHVTAEY 216 (298)
Q Consensus 149 ~~aDLVIaNT~v~g~w-l~~l~~~~~p~~~~pVIWWIHE~r~~Yf~------l~-----~vkhLp~v~~~~~~S~AtA~y 216 (298)
.+.|.+|........+ +..+ .. ..|++-|+|+....... ++ ...++....++++.|+.+++.
T Consensus 98 ~~~diii~~~~~~~~~~~~~~-----~~-~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~ 171 (372)
T cd04949 98 TKPDVFILDRPTLDGQALLNM-----KK-AAKVVVVLHSNHVSDNNDPVHSLINNFYEYVFENLDKVDGVIVATEQQKQD 171 (372)
T ss_pred CCCCEEEECCccccchhHHhc-----cC-CceEEEEEChHHhCCcccccccccchhhHHHHhChhhCCEEEEccHHHHHH
Confidence 6889999988776666 3322 11 23688999975411111 00 012233344567779999999
Q ss_pred HHHhccc
Q 022363 217 WKNRTRE 223 (298)
Q Consensus 217 w~~r~~~ 223 (298)
+++..+.
T Consensus 172 l~~~~~~ 178 (372)
T cd04949 172 LQKQFGN 178 (372)
T ss_pred HHHHhCC
Confidence 9988874
No 492
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=23.87 E-value=3.7e+02 Score=23.48 Aligned_cols=78 Identities=19% Similarity=0.193 Sum_probs=48.6
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhh
Q 022363 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTA 148 (298)
Q Consensus 69 ~~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A 148 (298)
.+|++.+.=|++.- -..+|=--+..-++..+.+.|..|..+.. .-|.+++.... ...+..+.++..
T Consensus 41 ~~~~~~~~~l~l~G-~~G~GKThLa~ai~~~~~~~g~~v~f~~~----------~~L~~~l~~~~---~~~~~~~~~~~l 106 (178)
T PF01695_consen 41 LEFIENGENLILYG-PPGTGKTHLAVAIANEAIRKGYSVLFITA----------SDLLDELKQSR---SDGSYEELLKRL 106 (178)
T ss_dssp H-S-SC--EEEEEE-STTSSHHHHHHHHHHHHHHTT--EEEEEH----------HHHHHHHHCCH---CCTTHCHHHHHH
T ss_pred CCCcccCeEEEEEh-hHhHHHHHHHHHHHHHhccCCcceeEeec----------Cceeccccccc---cccchhhhcCcc
Confidence 46666444444443 47899999999999999999999998872 23456655331 223344556677
Q ss_pred hccCEEEEechh
Q 022363 149 LKADLIVLNTAV 160 (298)
Q Consensus 149 ~~aDLVIaNT~v 160 (298)
.++|++|.-=+-
T Consensus 107 ~~~dlLilDDlG 118 (178)
T PF01695_consen 107 KRVDLLILDDLG 118 (178)
T ss_dssp HTSSCEEEETCT
T ss_pred ccccEecccccc
Confidence 889999886553
No 493
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=23.78 E-value=6.1e+02 Score=23.76 Aligned_cols=86 Identities=15% Similarity=0.108 Sum_probs=50.7
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhhhccC
Q 022363 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (298)
Q Consensus 73 ~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A~~aD 152 (298)
++++|-+|-.+++-..-.-+.--+=..+++.|+++.+...... .+- +.++ .+.+ ...++|
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~---~~~----~~~~------------i~~l-~~~~vD 83 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGN---EET----QMSQ------------IENM-INRGVD 83 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECCCCC---HHH----HHHH------------HHHH-HHcCCC
Confidence 5777888887776666666666667788888888777653321 010 1111 1111 245888
Q ss_pred EEEEechhc---hHHHHHHhhccCCCCCCceEEE
Q 022363 153 LIVLNTAVA---GKWLDAVLKEDVPRVLPNVLWW 183 (298)
Q Consensus 153 LVIaNT~v~---g~wl~~l~~~~~p~~~~pVIWW 183 (298)
-||...... .++++.+.+..+ |||-+
T Consensus 84 GiIi~~~~~~~~~~~l~~~~~~~i-----PvV~i 112 (330)
T PRK10355 84 VLVIIPYNGQVLSNVIKEAKQEGI-----KVLAY 112 (330)
T ss_pred EEEEeCCChhhHHHHHHHHHHCCC-----eEEEE
Confidence 888765432 356666654455 66666
No 494
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=23.73 E-value=1.5e+02 Score=24.35 Aligned_cols=36 Identities=25% Similarity=0.220 Sum_probs=31.2
Q ss_pred EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 022363 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (298)
Q Consensus 77 ILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (298)
|+.|...-+..|-.-+-.+||..|.+.|..|.++=.
T Consensus 1 ~i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~ 36 (179)
T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDA 36 (179)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 456777788899999999999999999999999953
No 495
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.70 E-value=2.1e+02 Score=25.90 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=24.2
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 022363 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (298)
Q Consensus 70 ~f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (298)
++|+||.+|+..---++ =.=..+|+.|-+.|+.|++..
T Consensus 2 ~~l~~k~~lITGas~~~----GIG~aia~~la~~G~~vil~~ 39 (262)
T PRK07984 2 GFLSGKRILVTGVASKL----SIAYGIAQAMHREGAELAFTY 39 (262)
T ss_pred cccCCCEEEEeCCCCCc----cHHHHHHHHHHHCCCEEEEEe
Confidence 45788877665422111 133578888989999987654
No 496
>PLN02527 aspartate carbamoyltransferase
Probab=23.70 E-value=4.6e+02 Score=25.30 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=44.3
Q ss_pred cccccEEEEEeccCC-CCCchHHHHHHHHHHHhC-CCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHhh
Q 022363 71 FMKSKLVLLVSHELS-LSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTA 148 (298)
Q Consensus 71 f~~~KkILLISHELS-~TGAPLlLleLA~~Lkq~-G~~V~vL~~~~G~~~g~v~~~L~~kll~rgI~v~~~k~~~~i~~A 148 (298)
-.+|++|.+|.+-.+ ++ .-+++..|... |.++.+.+-++=...+++ .+++.+.|..+...... -+..
T Consensus 148 ~l~g~kva~vGD~~~~rv-----~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~----~~~~~~~g~~~~~~~d~--~~a~ 216 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRT-----VRSLAYLLAKYEDVKIYFVAPDVVKMKDDI----KDYLTSKGVEWEESSDL--MEVA 216 (306)
T ss_pred CcCCCEEEEECCCCCChh-----HHHHHHHHHhcCCCEEEEECCCccCCCHHH----HHHHHHcCCEEEEEcCH--HHHh
Confidence 368999999997655 34 33444444444 899988884321111222 34455566654321111 1356
Q ss_pred hccCEEEEec
Q 022363 149 LKADLIVLNT 158 (298)
Q Consensus 149 ~~aDLVIaNT 158 (298)
.++|.|++..
T Consensus 217 ~~aDvvyt~~ 226 (306)
T PLN02527 217 SKCDVLYQTR 226 (306)
T ss_pred CCCCEEEECC
Confidence 7999999953
No 497
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=23.67 E-value=1.6e+02 Score=28.75 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=32.3
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~ 116 (298)
=++||.+++| .|.=.||+ -|.+.|+.|++.|+.-+.+..-+|-
T Consensus 215 dV~gk~viIV-DDIidTG~--Tl~~aa~~Lk~~GA~~V~~~~tHgi 257 (323)
T PRK02458 215 DVAGKKAILI-DDILNTGK--TFAEAAKIVEREGATEIYAVASHGL 257 (323)
T ss_pred ccCCCEEEEE-cceeCcHH--HHHHHHHHHHhCCCCcEEEEEEChh
Confidence 3799988777 45555666 5899999999999986666656553
No 498
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=23.65 E-value=7.4e+02 Score=24.70 Aligned_cols=86 Identities=19% Similarity=0.261 Sum_probs=50.3
Q ss_pred HHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc--CCceeehhch---hHHHhhhccCEEEEechhchHHHHHH
Q 022363 94 MELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR--GVQVISAKGQ---ETINTALKADLIVLNTAVAGKWLDAV 168 (298)
Q Consensus 94 leLA~~Lkq~G~~V~vL~~~~G~~~g~v~~~L~~kll~r--gI~v~~~k~~---~~i~~A~~aDLVIaNT~v~g~wl~~l 168 (298)
+.++..|-..|...+=++..+. ..-+ .+...++ +..-+-.+.| +.|. +.+.||||+-+-=-....++|
T Consensus 57 ~SFaDaLaal~v~PVGIADDnk--~krI----~k~Vr~ki~~ytSVGTRsQPslE~Is-~LKPDLIIAD~sRHk~vy~eL 129 (310)
T COG4594 57 LSFADALAALGVTPVGIADDNK--KKRI----LKDVRDKIDPYTSVGTRSQPSLEAIS-ALKPDLIIADSSRHKKVYKEL 129 (310)
T ss_pred ecHHHHHHHcCCeeeeeccCch--hhhh----hHHHHhhcCCcccccCCCCCCHHHHh-ccCCCeEEecchhhHHHHHHH
Confidence 4567889999999888883322 1222 2222222 1222222333 3444 789999999998777777888
Q ss_pred hhccCCCCCCceEEEeeeccccccc
Q 022363 169 LKEDVPRVLPNVLWWIHEMRGHYFK 193 (298)
Q Consensus 169 ~~~~~p~~~~pVIWWIHE~r~~Yf~ 193 (298)
. ++. |+|-.--- .+.|-.
T Consensus 130 k-----KIA-PTi~LkS~-~~dY~e 147 (310)
T COG4594 130 K-----KIA-PTIALKSR-NEDYQE 147 (310)
T ss_pred H-----hhc-ceeEeccc-CccHHH
Confidence 4 445 77765421 155653
No 499
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=23.59 E-value=4.5e+02 Score=25.05 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=20.9
Q ss_pred hhccCEEEEechhc---hHHHHHHhhccCCCCCCceEEEeeec
Q 022363 148 ALKADLIVLNTAVA---GKWLDAVLKEDVPRVLPNVLWWIHEM 187 (298)
Q Consensus 148 A~~aDLVIaNT~v~---g~wl~~l~~~~~p~~~~pVIWWIHE~ 187 (298)
..++|.|++...-. .+.++++.+... |||.|=.+.
T Consensus 78 ~~~vdgIiv~~~d~~al~~~l~~a~~~gI-----pVV~~d~~~ 115 (336)
T PRK15408 78 NQGYNAIIVSAVSPDGLCPALKRAMQRGV-----KVLTWDSDT 115 (336)
T ss_pred HcCCCEEEEecCCHHHHHHHHHHHHHCCC-----eEEEeCCCC
Confidence 56899888864322 345555543344 777776553
No 500
>PLN02293 adenine phosphoribosyltransferase
Probab=23.58 E-value=1.5e+02 Score=26.57 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=28.3
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 022363 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (298)
Q Consensus 71 f~~~KkILLISHELS~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (298)
.-+|++||+| .|.=.||+ -+..+++.|++.|.+++-+.
T Consensus 122 i~~G~rVlIV-DDvitTG~--T~~~~~~~l~~~Ga~~v~~~ 159 (187)
T PLN02293 122 VEPGERALVI-DDLIATGG--TLCAAINLLERAGAEVVECA 159 (187)
T ss_pred cCCCCEEEEE-eccccchH--HHHHHHHHHHHCCCEEEEEE
Confidence 3479988877 56667777 57788899999999854433
Done!