BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022364
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 207 bits (526), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 149/227 (65%), Gaps = 7/227 (3%)
Query: 16 FLCSAFAACFAELCTIPLDTAKVRLQLQKKTASGDGVSVS-KYRGLMGTVVTIAREEGLW 74
FL + AAC A+L T PLDTAKVRLQ+Q ++ + S +YRG++GT++T+ R EG
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 75 ALWNGVIAGLHRQCIYGGLRIGLYDPVKTFLV-GSDFVGDIPLYQKIFAALLTGAIAIVV 133
+L+NG++AGL RQ + +RIGLYD VK F GS+ G + ++ A TGA+A+ V
Sbjct: 65 SLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAG---IGSRLLAGSTTGALAVAV 121
Query: 134 ANPTDLVKVRLQAEGKLPSGVPRRYYGALDAYCTIVRQEGLGALWTGLGPNIARNAIVNA 193
A PTD+VKVR QA+ + G RRY ++AY TI R+EG+ LW G PN+ARNAIVN
Sbjct: 122 AQPTDVVKVRFQAQARAGGG--RRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNC 179
Query: 194 AELASYDQVKETILKIPGFTDNIFTHILAGLGAGLFAVCIGSPIDVV 240
AEL +YD +K+T+LK TD++ H + GAG I SP+DVV
Sbjct: 180 AELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVV 226
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 14/177 (7%)
Query: 32 PLDTAKVRLQLQKKTASGDGVSVSKYRGLMGTVVTIAREEGLWALWNGVIAGLHRQCIYG 91
P D KVR Q Q + G +Y+ + TIAREEG+ LW G + R I
Sbjct: 124 PTDVVKVRFQAQARAGGG-----RRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVN 178
Query: 92 GLRIGLYDPVKTFLVGSDFV-GDIPLYQKIFAALLTGAIAIVVANPTDLVKVRLQAEGKL 150
+ YD +K L+ ++ + D+P + +A G V+A+P D+VK R
Sbjct: 179 CAELVTYDLIKDTLLKANLMTDDLPCH--FTSAFGAGFCTTVIASPVDVVKTRYM----- 231
Query: 151 PSGVPRRYYGALDAYCTIVRQEGLGALWTGLGPNIARNAIVNAAELASYDQVKETIL 207
+ +Y+ A T++R+EG A + G P+ R N +Y+Q+K ++
Sbjct: 232 -NSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
Query: 119 KIFAALLTGAIAIVVANPTDLVKVRLQAEGK----LPSGVPRRYYGALDAYCTIVRQEGL 174
K A IA ++ P D KVRLQ +G+ + + +Y G L T+VR EG
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP 63
Query: 175 GALWTGLGPNIARNAIVNAAELASYDQVKETILKIPGFTDNIFTHILAGLGAGLFAVCIG 234
+L+ GL + R + + YD VK+ K I + +LAG G AV +
Sbjct: 64 RSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHA-GIGSRLLAGSTTGALAVAVA 122
Query: 235 SPIDVV 240
P DVV
Sbjct: 123 QPTDVV 128
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 86/200 (43%), Gaps = 12/200 (6%)
Query: 10 ISFAQTFLCSAFAACFAELCTIPLDTAKVRLQLQKKTASGDGVSVSKYRGLMGTVVTIAR 69
+SF + FL AA ++ P++ K+ LQ+Q AS + +Y+G++ VV I +
Sbjct: 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQH--ASKQISAEKQYKGIIDCVVRIPK 62
Query: 70 EEGLWALWNGVIAGLHRQCIYGGLRIGLYDPVKTFLVGSDFVGDIPLYQKIFAALL---- 125
E+G + W G +A + R L D K +G V + + FA L
Sbjct: 63 EQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGG--VDRHKQFWRYFAGNLASGG 120
Query: 126 -TGAIAIVVANPTDLVKVRLQAE-GKLPSGVPRRYYGALDAYCTIVRQEGLGALWTGLGP 183
GA ++ P D + RL A+ GK R + G + I + +GL L+ G
Sbjct: 121 AAGATSLCFVYPLDFARTRLAADVGK--GAAQREFTGLGNCITKIFKSDGLRGLYQGFNV 178
Query: 184 NIARNAIVNAAELASYDQVK 203
++ I AA YD K
Sbjct: 179 SVQGIIIYRAAYFGVYDTAK 198
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 10/191 (5%)
Query: 17 LCSAFAACFAELCTI-PLDTAKVRLQLQKKTASGDGVSVSKYRGLMGTVVTIAREEGLWA 75
L S AA LC + PLD A+ RL G G + ++ GL + I + +GL
Sbjct: 116 LASGGAAGATSLCFVYPLDFARTRLAAD----VGKGAAQREFTGLGNCITKIFKSDGLRG 171
Query: 76 LWNGVIAGLHRQCIYGGLRIGLYDPVKTFLVGSDFVGDIPLYQKIFAALLTGAIAIVVAN 135
L+ G + IY G+YD K L V I + + A +T A+A +V+
Sbjct: 172 LYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSW--MIAQTVT-AVAGLVSY 228
Query: 136 PTDLVKVRLQAEGKLPSGVPRRYYGALDAYCTIVRQEGLGALWTGLGPNIARNAIVNAAE 195
P D V+ R+ + G Y G +D + I + EG A + G N+ R + A
Sbjct: 229 PFDTVRRRMMMQSG-RKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR-GMGGAFV 286
Query: 196 LASYDQVKETI 206
L YD++K+ +
Sbjct: 287 LVLYDEIKKFV 297
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 5/130 (3%)
Query: 114 IPLYQKIFAALLTGAIAIVVANPTDLVKVRLQAEGKLPS-GVPRRYYGALDAYCTIVRQE 172
+ + A + AI+ P + VK+ LQ + ++Y G +D I +++
Sbjct: 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQ 64
Query: 173 GLGALWTGLGPNIARNAIVNAAELASYDQVKETIL----KIPGFTDNIFTHILAGLGAGL 228
G + W G N+ R A A D+ K+ L + F ++ +G AG
Sbjct: 65 GFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGA 124
Query: 229 FAVCIGSPID 238
++C P+D
Sbjct: 125 TSLCFVYPLD 134
>pdb|3OT5|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
pdb|3OT5|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
pdb|3OT5|C Chain C, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
pdb|3OT5|D Chain D, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
Length = 403
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 125 LTGAIAIVVANPTDLVKVRLQAEGKLPSGVPRRYYGALDAYCTIVRQEGLGALWTGLGPN 184
LTG +A + +PT K L AEGK P+ + A+DA T V+++ + LG N
Sbjct: 165 LTGVMADIHFSPTKQAKENLLAEGKDPATIFVTGNTAIDALKTTVQKDYHHPILENLGDN 224
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 90 YGGLRIGLYDPVKTFLVGSDFVGDIPLYQKIFAALLTGAIAIVVANPTDLVKVRLQ 145
+ GL GL D + L G+D + D+ + K AA A ANPT L ++ +Q
Sbjct: 528 HAGLAFGL-DRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQ 582
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 90 YGGLRIGLYDPVKTFLVGSDFVGDIPLYQKIFAALLTGAIAIVVANPTDLVKVRLQ 145
+ GL GL D + L G+D + D+ + K AA A ANPT L ++ +Q
Sbjct: 528 HAGLAFGL-DRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQ 582
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.142 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,723,688
Number of Sequences: 62578
Number of extensions: 300554
Number of successful extensions: 980
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 963
Number of HSP's gapped (non-prelim): 10
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)