Query 022364
Match_columns 298
No_of_seqs 191 out of 2076
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 04:17:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022364.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022364hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 2E-55 6.8E-60 378.3 24.6 277 8-289 3-283 (297)
2 2lck_A Mitochondrial uncouplin 100.0 9.4E-55 3.2E-59 374.9 24.3 272 14-294 3-276 (303)
3 2lck_A Mitochondrial uncouplin 100.0 4.9E-37 1.7E-41 264.3 18.7 187 9-207 101-287 (303)
4 1okc_A ADP, ATP carrier protei 100.0 7.8E-37 2.7E-41 262.4 18.3 186 11-205 111-296 (297)
5 3tgu_G UQCRQ, mitochondrial ub 32.7 70 0.0024 20.7 4.2 40 172-211 32-71 (81)
6 3f2e_A SIRV coat protein; four 27.2 32 0.0011 21.8 1.8 67 157-242 7-79 (100)
7 1pp9_G Ubiquinol-cytochrome C 26.6 98 0.0034 20.0 4.1 41 172-212 32-72 (81)
8 1y9i_A Low temperature require 16.5 1.7E+02 0.0057 22.1 4.1 44 89-132 111-158 (178)
9 4b19_A PEPA1; toxin, toxin apo 15.0 17 0.00058 18.6 -1.1 22 218-239 5-26 (30)
10 2acm_A Mucin-1; auto-catalytic 13.6 17 0.00057 21.9 -1.6 19 59-77 41-59 (66)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2e-55 Score=378.26 Aligned_cols=277 Identities=20% Similarity=0.295 Sum_probs=236.9
Q ss_pred cCcchHHHHHHHHHHhHhhHhhcchhhhhHhHhhcccccCCCCCCccccCCChHHHHHHHHHhhchhhhhcchhHHHHHH
Q 022364 8 PEISFAQTFLCSAFAACFAELCTIPLDTAKVRLQLQKKTASGDGVSVSKYRGLMGTVVTIAREEGLWALWNGVIAGLHRQ 87 (298)
Q Consensus 8 ~~~~~~~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~~~~~ 87 (298)
++++++.++++|++||+++.++++|+|++|+|+|++..... ......|+++++++++++++||+++||||+.+++++.
T Consensus 3 ~~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~--~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~ 80 (297)
T 1okc_A 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQ--ISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRY 80 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSS--CCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccc--cccccccccHHHHHHHHHhccchhheecccHHHHHHH
Confidence 35678899999999999999999999999999999864321 1123478999999999999999999999999999999
Q ss_pred HhhhhhhhhcHHHHHHhhccC-CCCCC--CchHHHHHHHHHHHHhHHhhcCcHHHHHHHHHhhCCCCCCCCCCcCChHHH
Q 022364 88 CIYGGLRIGLYDPVKTFLVGS-DFVGD--IPLYQKIFAALLTGAIAIVVANPTDLVKVRLQAEGKLPSGVPRRYYGALDA 164 (298)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~ag~~ag~~~~~~~~P~~~vk~r~q~~~~~~~~~~~~~~~~~~~ 164 (298)
++..+++|.+||.+++.+.+. +.... .+....+++|++||+++.++++|+|+||+|+|++... .+....|.+++++
T Consensus 81 ~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~-~~~~~~~~~~~~~ 159 (297)
T 1okc_A 81 FPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGK-GAAQREFTGLGNC 159 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-STTTCSCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccC-CCcCcCCCCHHHH
Confidence 999999999999999954322 22111 2346788999999999999999999999999998532 1223478999999
Q ss_pred HHHHHHhhchhhcccccHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhcchHHHHHhhh
Q 022364 165 YCTIVRQEGLGALWTGLGPNIARNAIVNAAELASYDQVKETILKIPGFTDNIFTHILAGLGAGLFAVCIGSPIDVVGFLS 244 (298)
Q Consensus 165 ~~~i~~~~G~~g~y~G~~~~~~~~~~~~~~~~~~ye~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~t~Pldviktr~ 244 (298)
+++|+++||++|||||+.+++++++|..+++|.+||.+|+.+.+. ...+.+..+++|++||+++++++||+||||+||
T Consensus 160 ~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~ 237 (297)
T 1okc_A 160 ITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRM 237 (297)
T ss_dssp HHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC--CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 999999999999999999999999999999999999999976543 245678889999999999999999999999999
Q ss_pred ccccccccCCCCCCchhHHHHHHHhhhccchhhcc-CCcchhcccc
Q 022364 245 PLLLSAKNNSLAAPNISISLYRLTTKVCCLLLLKK-QPAYVRNYEE 289 (298)
Q Consensus 245 q~~~~~~~~~~~~~~~~~~~~~~~~~eG~~~~~~G-~~~~~r~~~~ 289 (298)
|++.........|.+.++++++++++||+++|||| .|+++|..+.
T Consensus 238 q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~~~ 283 (297)
T 1okc_A 238 MMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGG 283 (297)
T ss_dssp HTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHHHHH
T ss_pred hhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhhccc
Confidence 98654433445678899999999999999999999 9999997543
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=9.4e-55 Score=374.89 Aligned_cols=272 Identities=40% Similarity=0.612 Sum_probs=239.3
Q ss_pred HHHHHHHHHhHhhHhhcchhhhhHhHhhcccccCCC-CCCccccCCChHHHHHHHHHhhchhhhhcchhHHHHHHHhhhh
Q 022364 14 QTFLCSAFAACFAELCTIPLDTAKVRLQLQKKTASG-DGVSVSKYRGLMGTVVTIAREEGLWALWNGVIAGLHRQCIYGG 92 (298)
Q Consensus 14 ~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~~~~~~~~~~ 92 (298)
.++++|++|++++.++++|+|++|+|+|++...... .......|+++++++++++++||+++||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 368999999999999999999999999998642110 0011346899999999999999999999999999999999999
Q ss_pred hhhhcHHHHHHhhccCCCCCCCchHHHHHHHHHHHHhHHhhcCcHHHHHHHHHhhCCCCCCCCCCcCChHHHHHHHHHhh
Q 022364 93 LRIGLYDPVKTFLVGSDFVGDIPLYQKIFAALLTGAIAIVVANPTDLVKVRLQAEGKLPSGVPRRYYGALDAYCTIVRQE 172 (298)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~P~~~vk~r~q~~~~~~~~~~~~~~~~~~~~~~i~~~~ 172 (298)
++|.+||.+|+.+.+... ..+....+++|++||+++.++++|+|+||+|+|++... +....|.+.++++++|+++|
T Consensus 83 i~f~~ye~~k~~~~~~~~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~--~~~~~~~~~~~~~~~i~~~e 158 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSE--HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA--GGGRRYQSTVEAYKTIAREE 158 (303)
T ss_dssp HTTTHHHHHHHHHSCCCS--SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC--CCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCc--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc--CCCCCCCCHHHHHHHHHHhc
Confidence 999999999999865322 46778899999999999999999999999999998642 22347899999999999999
Q ss_pred chhhcccccHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhcchHHHHHhhhcccccccc
Q 022364 173 GLGALWTGLGPNIARNAIVNAAELASYDQVKETILKIPGFTDNIFTHILAGLGAGLFAVCIGSPIDVVGFLSPLLLSAKN 252 (298)
Q Consensus 173 G~~g~y~G~~~~~~~~~~~~~~~~~~ye~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~t~Pldviktr~q~~~~~~~ 252 (298)
|++|||||+.+++++++|..+++|.+||.+|+.+.+.....++....+++|++||+++++++||+|+||+|||.+..
T Consensus 159 G~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~--- 235 (303)
T 2lck_A 159 GIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL--- 235 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS---
T ss_pred ChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc---
Confidence 99999999999999999999999999999999987664456678889999999999999999999999999998542
Q ss_pred CCCCCCchhHHHHHHHhhhccchhhcc-CCcchhccccchhee
Q 022364 253 NSLAAPNISISLYRLTTKVCCLLLLKK-QPAYVRNYEECAYLI 294 (298)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~eG~~~~~~G-~~~~~r~~~~~~~~~ 294 (298)
..|.+.++++++++++||+++|||| .|+++|..+...+.+
T Consensus 236 --~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f 276 (303)
T 2lck_A 236 --GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMF 276 (303)
T ss_dssp --SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHH
T ss_pred --cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHH
Confidence 2477899999999999999999999 999999999887754
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=4.9e-37 Score=264.31 Aligned_cols=187 Identities=27% Similarity=0.405 Sum_probs=168.8
Q ss_pred CcchHHHHHHHHHHhHhhHhhcchhhhhHhHhhcccccCCCCCCccccCCChHHHHHHHHHhhchhhhhcchhHHHHHHH
Q 022364 9 EISFAQTFLCSAFAACFAELCTIPLDTAKVRLQLQKKTASGDGVSVSKYRGLMGTVVTIAREEGLWALWNGVIAGLHRQC 88 (298)
Q Consensus 9 ~~~~~~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~~~~~~ 88 (298)
..+....+++|++||+++.++++|+|++|+|+|++... .....|+++++++++|+++||+++||||+.+++++.+
T Consensus 101 ~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~-----~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~ 175 (303)
T 2lck_A 101 HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA-----GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNA 175 (303)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC-----CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc-----CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHH
Confidence 46788999999999999999999999999999998642 1234789999999999999999999999999999999
Q ss_pred hhhhhhhhcHHHHHHhhccCCCCCCCchHHHHHHHHHHHHhHHhhcCcHHHHHHHHHhhCCCCCCCCCCcCChHHHHHHH
Q 022364 89 IYGGLRIGLYDPVKTFLVGSDFVGDIPLYQKIFAALLTGAIAIVVANPTDLVKVRLQAEGKLPSGVPRRYYGALDAYCTI 168 (298)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~P~~~vk~r~q~~~~~~~~~~~~~~~~~~~~~~i 168 (298)
+..+++|.+||.+|+.+.+... ...+....+++|++||+++.++++|+|+||+|+|.+.. ..|.++++++++|
T Consensus 176 ~~~~i~f~~ye~~k~~l~~~~~-~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~------~~y~~~~~~~~~i 248 (303)
T 2lck_A 176 IVNCAELVTYDLIKDTLLKANL-MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL------GQYHSAGHCALTM 248 (303)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTS-CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS------SSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc------cccCCHHHHHHHH
Confidence 9999999999999999854332 24567788999999999999999999999999999753 2689999999999
Q ss_pred HHhhchhhcccccHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 022364 169 VRQEGLGALWTGLGPNIARNAIVNAAELASYDQVKETIL 207 (298)
Q Consensus 169 ~~~~G~~g~y~G~~~~~~~~~~~~~~~~~~ye~~~~~~~ 207 (298)
+++||++|||||+.|+++|.+|..+++|.+||.+|+.+.
T Consensus 249 ~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~ 287 (303)
T 2lck_A 249 LRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287 (303)
T ss_dssp HHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998664
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=7.8e-37 Score=262.42 Aligned_cols=186 Identities=25% Similarity=0.390 Sum_probs=161.0
Q ss_pred chHHHHHHHHHHhHhhHhhcchhhhhHhHhhcccccCCCCCCccccCCChHHHHHHHHHhhchhhhhcchhHHHHHHHhh
Q 022364 11 SFAQTFLCSAFAACFAELCTIPLDTAKVRLQLQKKTASGDGVSVSKYRGLMGTVVTIAREEGLWALWNGVIAGLHRQCIY 90 (298)
Q Consensus 11 ~~~~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~~~~~~~~ 90 (298)
++...+++|++|++++.++++|+|+||+|+|++.... .....|+++++++++|+++||+++||||+.+++++.++.
T Consensus 111 ~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~----~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 186 (297)
T 1okc_A 111 YFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG----AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIY 186 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS----TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC----CcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHH
Confidence 4578899999999999999999999999999985321 123478999999999999999999999999999999999
Q ss_pred hhhhhhcHHHHHHhhccCCCCCCCchHHHHHHHHHHHHhHHhhcCcHHHHHHHHHhhCCCCCCCCCCcCChHHHHHHHHH
Q 022364 91 GGLRIGLYDPVKTFLVGSDFVGDIPLYQKIFAALLTGAIAIVVANPTDLVKVRLQAEGKLPSGVPRRYYGALDAYCTIVR 170 (298)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~P~~~vk~r~q~~~~~~~~~~~~~~~~~~~~~~i~~ 170 (298)
.+++|.+||.+|+.+.+.. ..+....+++|++||+++.++++|+|+||+|+|.+... .+....|.++++++++|++
T Consensus 187 ~~~~f~~ye~~k~~~~~~~---~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~-~~~~~~y~~~~~~~~~i~~ 262 (297)
T 1okc_A 187 RAAYFGVYDTAKGMLPDPK---NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGR-KGADIMYTGTVDCWRKIAK 262 (297)
T ss_dssp HHHHHHHHHHHHHSSCGGG---CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC-CGGGCSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCC---CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCC-CCCCCCCCCHHHHHHHHHH
Confidence 9999999999999874322 35677889999999999999999999999999987542 1223479999999999999
Q ss_pred hhchhhcccccHHHHHHHHHHHhhHHHHHHHHHHH
Q 022364 171 QEGLGALWTGLGPNIARNAIVNAAELASYDQVKET 205 (298)
Q Consensus 171 ~~G~~g~y~G~~~~~~~~~~~~~~~~~~ye~~~~~ 205 (298)
+||++|||||+.|+++|. +..++.|.+||.+|+.
T Consensus 263 ~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~ 296 (297)
T 1okc_A 263 DEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKF 296 (297)
T ss_dssp HHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC---
T ss_pred HcCcCeEecchHHHHHhh-ccceeeehHHHHHHhh
Confidence 999999999999999995 5789999999998875
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=32.74 E-value=70 Score=20.69 Aligned_cols=40 Identities=10% Similarity=0.184 Sum_probs=30.4
Q ss_pred hchhhcccccHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Q 022364 172 EGLGALWTGLGPNIARNAIVNAAELASYDQVKETILKIPG 211 (298)
Q Consensus 172 ~G~~g~y~G~~~~~~~~~~~~~~~~~~ye~~~~~~~~~~~ 211 (298)
+|+-..+|-+.-.++..+|...+...+|++.++.......
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~r 71 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKR 71 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 4445555556778888999999999999999988765433
No 6
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=27.21 E-value=32 Score=21.84 Aligned_cols=67 Identities=19% Similarity=0.356 Sum_probs=42.2
Q ss_pred CcCChHHHHHHHHHhhchh----hcccccHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHH
Q 022364 157 RYYGALDAYCTIVRQEGLG----ALWTGLGPNIARNAIVNAAELASYDQVKETILKIPGFTDNIFTHILAGLGAGLFAVC 232 (298)
Q Consensus 157 ~~~~~~~~~~~i~~~~G~~----g~y~G~~~~~~~~~~~~~~~~~~ye~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~ 232 (298)
++.+.-+-+..++.+-|+. ..|.|+...+.|.+-. + ...+.+.+++.|.-+=.++.+
T Consensus 7 kftsvne~vsavltqygvtgpnraiyqgfglkvaralnr--------------~-----g~gpalvnminglkayyisaf 67 (100)
T 3f2e_A 7 KFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARALNR--------------L-----GGGPALVNMINGLKAYYISAF 67 (100)
T ss_dssp -CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHH--------------H-----CSSHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHHHh--------------c-----CCchHHHHHHhhhhHhhhHhh
Confidence 6777778888888888864 4788888777764311 1 123556666666666666666
Q ss_pred hcch--HHHHHh
Q 022364 233 IGSP--IDVVGF 242 (298)
Q Consensus 233 ~t~P--ldvikt 242 (298)
=.+| +|.|-.
T Consensus 68 nanp~vldavtn 79 (100)
T 3f2e_A 68 NANPTVLDAVTD 79 (100)
T ss_dssp CCCHHHHHHHHH
T ss_pred cCCcHHHHHHHH
Confidence 6666 344443
No 7
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=26.64 E-value=98 Score=19.97 Aligned_cols=41 Identities=17% Similarity=-0.001 Sum_probs=30.8
Q ss_pred hchhhcccccHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Q 022364 172 EGLGALWTGLGPNIARNAIVNAAELASYDQVKETILKIPGF 212 (298)
Q Consensus 172 ~G~~g~y~G~~~~~~~~~~~~~~~~~~ye~~~~~~~~~~~~ 212 (298)
+|+...+|-+.-.++..+|...+.+.+|++.++.......+
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rK 72 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRK 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCC
Confidence 44555566677777888999999999999999887655433
No 8
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=16.55 E-value=1.7e+02 Score=22.09 Aligned_cols=44 Identities=20% Similarity=0.166 Sum_probs=27.9
Q ss_pred hhhhhhhhcHHHHHHhh----ccCCCCCCCchHHHHHHHHHHHHhHHh
Q 022364 89 IYGGLRIGLYDPVKTFL----VGSDFVGDIPLYQKIFAALLTGAIAIV 132 (298)
Q Consensus 89 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ag~~ag~~~~~ 132 (298)
....+.|..||..|-.. .+....+-..+...++||.+|+++..+
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~l 158 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRL 158 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHHH
Confidence 35567788888888543 222222345677888888888876543
No 9
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=15.01 E-value=17 Score=18.55 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhcchHHH
Q 022364 218 THILAGLGAGLFAVCIGSPIDV 239 (298)
Q Consensus 218 ~~~~~g~~ag~~~~~~t~Pldv 239 (298)
.++++-+++|++-++++|-|+-
T Consensus 5 v~iia~visGcivalF~hWL~~ 26 (30)
T 4b19_A 5 VHIIAPVISGCAIAFFSYWLSR 26 (30)
T ss_dssp TSSTTTTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHh
Confidence 3445566788888888887763
No 10
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=13.63 E-value=17 Score=21.88 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=15.3
Q ss_pred ChHHHHHHHHHhhchhhhh
Q 022364 59 GLMGTVVTIAREEGLWALW 77 (298)
Q Consensus 59 ~~~~~~~~i~~~~G~~~ly 77 (298)
++...+.+||+++++.|++
T Consensus 41 ~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 41 DISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHccCCeeeee
Confidence 5778888889888888775
Done!