Query 022365
Match_columns 298
No_of_seqs 204 out of 1618
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 02:58:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022365.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022365hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 1.2E-47 2.5E-52 345.1 30.9 246 46-297 63-330 (365)
2 PTZ00224 protein phosphatase 2 100.0 1.5E-44 3.2E-49 326.0 30.4 250 32-297 6-271 (381)
3 COG0631 PTC1 Serine/threonine 100.0 7.1E-45 1.5E-49 315.5 24.9 239 46-297 6-252 (262)
4 KOG0697 Protein phosphatase 1B 100.0 1.9E-43 4.1E-48 293.2 21.2 258 34-297 8-291 (379)
5 KOG0698 Serine/threonine prote 100.0 5.3E-42 1.1E-46 307.0 28.2 247 50-298 42-305 (330)
6 PF00481 PP2C: Protein phospha 100.0 6.9E-43 1.5E-47 303.5 15.8 236 49-289 1-254 (254)
7 PRK14559 putative protein seri 100.0 7.9E-40 1.7E-44 310.7 26.5 240 47-297 374-635 (645)
8 cd00143 PP2Cc Serine/threonine 100.0 6.8E-39 1.5E-43 277.8 26.8 240 49-296 2-254 (254)
9 smart00332 PP2Cc Serine/threon 100.0 2.7E-38 5.9E-43 274.5 27.3 239 47-294 5-255 (255)
10 KOG0699 Serine/threonine prote 100.0 1.1E-35 2.3E-40 255.2 19.8 157 138-298 327-504 (542)
11 KOG0700 Protein phosphatase 2C 100.0 4.4E-31 9.6E-36 231.9 17.8 220 63-284 85-378 (390)
12 KOG1379 Serine/threonine prote 99.9 5.5E-26 1.2E-30 193.5 22.3 203 62-296 90-330 (330)
13 KOG1323 Serine/threonine phosp 99.9 2E-25 4.4E-30 190.3 17.7 221 77-297 142-487 (493)
14 KOG0618 Serine/threonine phosp 99.9 2.4E-22 5.3E-27 191.7 17.1 241 48-297 522-772 (1081)
15 PF13672 PP2C_2: Protein phosp 99.9 3.9E-21 8.4E-26 162.4 14.0 178 53-265 3-193 (212)
16 smart00331 PP2C_SIG Sigma fact 99.8 3.8E-18 8.3E-23 142.0 21.8 184 48-281 4-192 (193)
17 TIGR02865 spore_II_E stage II 99.7 2.2E-16 4.9E-21 155.3 20.2 187 61-296 565-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.7 2.1E-14 4.6E-19 119.3 20.7 176 77-297 2-193 (193)
19 COG2208 RsbU Serine phosphatas 98.8 9.9E-07 2.1E-11 80.8 21.9 187 62-297 161-366 (367)
20 PRK10693 response regulator of 87.6 9.5 0.00021 33.9 11.2 104 63-173 150-259 (303)
21 COG3700 AphA Acid phosphatase 57.9 19 0.0004 29.4 4.2 45 240-284 71-130 (237)
22 COG2168 DsrH Uncharacterized c 57.5 6.5 0.00014 28.4 1.4 50 236-289 22-71 (96)
23 PF09436 DUF2016: Domain of un 47.4 12 0.00027 25.5 1.5 17 238-255 26-42 (72)
24 KOG0641 WD40 repeat protein [G 27.3 4E+02 0.0086 22.8 7.5 41 143-183 232-275 (350)
25 PF04077 DsrH: DsrH like prote 23.0 20 0.00043 25.4 -0.7 27 237-264 17-43 (88)
26 PF01436 NHL: NHL repeat; Int 20.7 1.5E+02 0.0033 15.6 3.9 19 150-168 10-28 (28)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=1.2e-47 Score=345.08 Aligned_cols=246 Identities=35% Similarity=0.566 Sum_probs=207.8
Q ss_pred CceeEEEEeeecCCCCCCCceEEEEeecc--------CCceeEEEEEEcCCCCchHHHHHHHHHHHHHHhhcCCCcCHHH
Q 022365 46 NKVSHGYHLVEGQSGHDMEDYLVAEYRKK--------KNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKA 117 (298)
Q Consensus 46 ~~~~~~~~s~~G~r~~~neD~~~~~~~~~--------~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~~~~~ 117 (298)
+-+.++.+|++|.|+ .|||++++..... ......||+|||||||+.++.++++.+.+.+.+...+...+..
T Consensus 63 ~~~~~~~~s~~G~R~-~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~ 141 (365)
T PLN03145 63 PVVRSGAWADIGSRS-SMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFPREIEK 141 (365)
T ss_pred CceEEEEEccccCCC-CCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence 457899999999866 9999987532110 1233579999999999999999999999998876655556788
Q ss_pred HHHHHHHHHHHHHHHhccc-CCCCCCceEEEEEEeCCeEEEEEcCCceEEEEecCceeecCCCCCChh--HHHHHHHcCC
Q 022365 118 AITNAYRSTDQFILENSMQ-LGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHA--ERRRIEKQGG 194 (298)
Q Consensus 118 ~l~~a~~~~~~~l~~~~~~-~~~~~~tt~~~~~i~~~~~~~a~vGDsr~~l~r~~~~~~lt~dh~~~~--e~~ri~~~gg 194 (298)
.|.++|.++++.+.+.... ....+|||++++++.++.+|++||||||+|++|++++.+||.||++.+ |+.||.+.||
T Consensus 142 al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg 221 (365)
T PLN03145 142 VVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGG 221 (365)
T ss_pred HHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCC
Confidence 8999999999998765432 234589999999999999999999999999999999999999999986 8899999999
Q ss_pred eeecCCCCcCccCCceeeecccCCccccC-------cccccceEEEEEeCCCCeEEEEEcCCccCCCCHHHHHHhH----
Q 022365 195 FVTSLPGDVPRVNGQLAVARAFGDQSLKA-------HLSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQEAVDLV---- 263 (298)
Q Consensus 195 ~~~~~~~~~~~~~~~~~ltr~lG~~~~~~-------~~~~~p~~~~~~l~~~~d~lvL~SDGl~d~l~~~ei~~~~---- 263 (298)
.+.. .+.++.+.+||+||+..+|. .+.++|++..+++.++|++||||||||||+|+++++.+++
T Consensus 222 ~v~~-----g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l 296 (365)
T PLN03145 222 YVYD-----GYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRL 296 (365)
T ss_pred ceec-----ceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHH
Confidence 8863 35667778999999976642 2578999999999998788899999999999999975554
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCcEEEEEEeC
Q 022365 264 KPIKDPQAAAKRLTTEALARKSKDDISCIVIRFG 297 (298)
Q Consensus 264 ~~~~~~~~~a~~L~~~a~~~~~~DNiTvivv~~~ 297 (298)
....+++++|+.|++.|+.+++.||+|+|||+|+
T Consensus 297 ~~~~~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~ 330 (365)
T PLN03145 297 QEHNDPVMCSKELVDEALKRKSGDNLAVVVVCFQ 330 (365)
T ss_pred hcCCCHHHHHHHHHHHHHhCCCCCCEEEEEEEee
Confidence 4456899999999999999999999999999986
No 2
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=1.5e-44 Score=325.99 Aligned_cols=250 Identities=34% Similarity=0.541 Sum_probs=202.5
Q ss_pred CccCCCCCccCCCCCceeEEEEeeecCCCCCCCceEEEEeeccCCceeEEEEEEcCCCCchHHHHHHHHHHHHHHhhcCC
Q 022365 32 SSSDTGKGRSKSSSNKVSHGYHLVEGQSGHDMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNF 111 (298)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~ 111 (298)
+.|...+.+....+..+.+|+.+++|.|+ .|||++++.. .....+|+|||||||.++|.++++.+...+.+....
T Consensus 6 ~~p~~~~~~~~~~~~~~~~g~~s~~G~R~-~nED~~~v~~----~~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~~ 80 (381)
T PTZ00224 6 PKPVLSKLVDRAGNSIFRCASACVNGYRE-SMEDAHLLYL----TDDWGFFGVFDGHVNDECSQYLARAWPQALEKEPEP 80 (381)
T ss_pred CCCccccccccCCCccEEEEEEeCCCCCC-CCCCeeEecc----CCCceEEEEEeCCCcHHHHHHHHHHHHHHHHhcccc
Confidence 34555555555566789999999999987 8999987532 234579999999999999999999988766543221
Q ss_pred CcCHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEEEEEeCCeEEEEEcCCceEEEEecCceeecCCCCCChh--HHHHH
Q 022365 112 WKDPKAAITNAYRSTDQFILENSMQLGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHA--ERRRI 189 (298)
Q Consensus 112 ~~~~~~~l~~a~~~~~~~l~~~~~~~~~~~~tt~~~~~i~~~~~~~a~vGDsr~~l~r~~~~~~lt~dh~~~~--e~~ri 189 (298)
.....|++++..+++.+.+... .+|+|++++++..+.+++++||||||+|++|+|++.+||+||++.+ |+.||
T Consensus 81 --~~~~~l~~a~~~~d~~i~~~~~---~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI 155 (381)
T PTZ00224 81 --MTDERMEELCLEIDEEWMDSGR---EGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRI 155 (381)
T ss_pred --ccHHHHHHHHHHHHHHHHhccc---CCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHH
Confidence 1245689999999999886543 2344444444445689999999999999999999999999999986 78899
Q ss_pred HHcCCeeecCCCCcCccCCceeeecccCCccccC---------cccccceEEEEEeCCCCeEEEEEcCCccC-CCCHHHH
Q 022365 190 EKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKA---------HLSSEPDVRHVPIDPSIEFLILASDGLWK-VMKNQEA 259 (298)
Q Consensus 190 ~~~gg~~~~~~~~~~~~~~~~~ltr~lG~~~~~~---------~~~~~p~~~~~~l~~~~d~lvL~SDGl~d-~l~~~ei 259 (298)
.+.|+.+.. .+.++.+.+||+||+..+|. .+.++|++..+.+.++ |+|||||||||| .++++|+
T Consensus 156 ~~~gg~v~~-----~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~~-D~llLaSDGL~d~~ls~eEi 229 (381)
T PTZ00224 156 EACGGRVVS-----NRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQSN-DFIILACDGVFEGNFSNEEV 229 (381)
T ss_pred HHccCEecc-----ccccCceeeecccCCcccccccccccccCcceeeeEEEEEECCCC-CEEEEECCCcCcCccCHHHH
Confidence 999988763 36677789999999976442 3457899999999987 899999999999 7999999
Q ss_pred HHhHc----CCCCHHHHHHHHHHHHHhCCCCCCcEEEEEEeC
Q 022365 260 VDLVK----PIKDPQAAAKRLTTEALARKSKDDISCIVIRFG 297 (298)
Q Consensus 260 ~~~~~----~~~~~~~~a~~L~~~a~~~~~~DNiTvivv~~~ 297 (298)
.+++. ...+++.+|+.|++.|+.+|+.||||||||+|.
T Consensus 230 ~~iv~~~l~~~~~~~~aA~~Lv~~A~~rGs~DNITvIvV~~~ 271 (381)
T PTZ00224 230 VAFVKEQLETCDDLAVVAGRVCDEAIRRGSKDNISCLIVQLK 271 (381)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCEEEEEEEee
Confidence 99886 346899999999999999999999999999985
No 3
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=7.1e-45 Score=315.50 Aligned_cols=239 Identities=29% Similarity=0.419 Sum_probs=202.7
Q ss_pred CceeEEEEeeecCCCCCCCceEEEEeeccCCceeEEEEEEcCCCCchHHHHHHHHHHHHHHhhcCC----CcC--HHHHH
Q 022365 46 NKVSHGYHLVEGQSGHDMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNF----WKD--PKAAI 119 (298)
Q Consensus 46 ~~~~~~~~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~----~~~--~~~~l 119 (298)
..+.++..++.|..++.|||++++........ ..+|+|||||||++++.++++.+...+.+.... ... ..+.|
T Consensus 6 ~~~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~l 84 (262)
T COG0631 6 LSLKVAGLSDVGTVRKHNEDAFLIKPNENGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEELL 84 (262)
T ss_pred ceeeeeeeccCCCccCCCCcceeeccccCCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHHH
Confidence 34788999999999989999998765332233 679999999999999988888888777664221 111 57899
Q ss_pred HHHHHHHHHHHHHhcc--cCCCCCCceEEEEEEeCCeEEEEEcCCceEEEEecCceeecCCCCCChhHHHHHHHcCCeee
Q 022365 120 TNAYRSTDQFILENSM--QLGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHAERRRIEKQGGFVT 197 (298)
Q Consensus 120 ~~a~~~~~~~l~~~~~--~~~~~~~tt~~~~~i~~~~~~~a~vGDsr~~l~r~~~~~~lt~dh~~~~e~~ri~~~gg~~~ 197 (298)
.+++..+++.+..... ....+||||++++++.++++|+|||||||+|++|++++.++|.||++.++ ++..+....
T Consensus 85 ~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~---~~~~~~~~~ 161 (262)
T COG0631 85 KEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNR---LEQRGIITP 161 (262)
T ss_pred HHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHH---HHHhcCCCH
Confidence 9999999999988764 23578999999999999999999999999999999999999999999875 334444444
Q ss_pred cCCCCcCccCCceeeecccCCccccCcccccceEEEEEeCCCCeEEEEEcCCccCCCCHHHHHHhHcCCCCHHHHHHHHH
Q 022365 198 SLPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQEAVDLVKPIKDPQAAAKRLT 277 (298)
Q Consensus 198 ~~~~~~~~~~~~~~ltr~lG~~~~~~~~~~~p~~~~~~l~~~~d~lvL~SDGl~d~l~~~ei~~~~~~~~~~~~~a~~L~ 277 (298)
.....+|+++ .+||+||+.. ...|++....+.++ |+|||||||||+.++++++.++++...+++.+++.|+
T Consensus 162 ~~~~~~~~~~---~ltralG~~~-----~~~p~~~~~~~~~~-d~llL~SDGl~d~v~~~~i~~il~~~~~~~~~~~~li 232 (262)
T COG0631 162 EEARSHPRRN---ALTRALGDFD-----LLEPDITELELEPG-DFLLLCSDGLWDVVSDDEIVDILKNSETPQEAADKLI 232 (262)
T ss_pred HHHHhCccch---hhhhhcCCCc-----ccceeEEEEEcCCC-CEEEEECCCCccCcCHHHHHHHHhcCCCHHHHHHHHH
Confidence 4444456666 9999999988 58999999999998 9999999999999999999999998899999999999
Q ss_pred HHHHhCCCCCCcEEEEEEeC
Q 022365 278 TEALARKSKDDISCIVIRFG 297 (298)
Q Consensus 278 ~~a~~~~~~DNiTvivv~~~ 297 (298)
+.|+.+++.||+|+|+|.+.
T Consensus 233 ~~a~~~g~~DNiT~ilv~~~ 252 (262)
T COG0631 233 ELALEGGGPDNITVVLVRLN 252 (262)
T ss_pred HHHHhcCCCCceEEEEEEee
Confidence 99999999999999999874
No 4
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-43 Score=293.15 Aligned_cols=258 Identities=30% Similarity=0.499 Sum_probs=223.5
Q ss_pred cCCCCCccCCCCCceeEEEEeeecCCCCCCCceEEEEeec-cCCceeEEEEEEcCCCCchHHHHHHHHHHHHHHhhcCCC
Q 022365 34 SDTGKGRSKSSSNKVSHGYHLVEGQSGHDMEDYLVAEYRK-KKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFW 112 (298)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~s~~G~r~~~neD~~~~~~~~-~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~ 112 (298)
|.+.+.-..-.+|.+.||.+|++|+|- +|||++...... ..-.++.+|+|+|||.|+.+|.+++..++..+.+..+|.
T Consensus 8 PkteKhn~~G~GNglryg~SSMQGWR~-eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~ 86 (379)
T KOG0697|consen 8 PKTEKHNAEGEGNGLRYGVSSMQGWRV-EMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFR 86 (379)
T ss_pred cccccccccCcCCceeeeeccccchhh-hhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHh
Confidence 333333333345789999999999998 999999754322 234789999999999999999999999999998866554
Q ss_pred c--------CHHHHHHHHHHHHHHHHHHhcccC--CCCCCceEEEEEEeCCeEEEEEcCCceEEEEecCceeecCCCCCC
Q 022365 113 K--------DPKAAITNAYRSTDQFILENSMQL--GPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEP 182 (298)
Q Consensus 113 ~--------~~~~~l~~a~~~~~~~l~~~~~~~--~~~~~tt~~~~~i~~~~~~~a~vGDsr~~l~r~~~~~~lt~dh~~ 182 (298)
. +.+..|+..|.++++.+....... ...+|+|++++++...++|++|+||||+++.|+|+...-|+||.+
T Consensus 87 ~~~k~gsv~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP 166 (379)
T KOG0697|consen 87 GMTKNGSVENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKP 166 (379)
T ss_pred hhccCCcHHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCC
Confidence 3 567889999999999887655432 245888899999999999999999999999999999999999999
Q ss_pred hh--HHHHHHHcCCeeecCCCCcCccCCceeeecccCCccccC---------cccccceEEEEEeCCCCeEEEEEcCCcc
Q 022365 183 HA--ERRRIEKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKA---------HLSSEPDVRHVPIDPSIEFLILASDGLW 251 (298)
Q Consensus 183 ~~--e~~ri~~~gg~~~~~~~~~~~~~~~~~ltr~lG~~~~~~---------~~~~~p~~~~~~l~~~~d~lvL~SDGl~ 251 (298)
.. |++||.++||.+.. .|.+|.++++|+||+..||. .++++|++........|+||||++||+|
T Consensus 167 ~~p~EkeRIqnAGGSVMI-----qRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIw 241 (379)
T KOG0697|consen 167 YLPKEKERIQNAGGSVMI-----QRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIW 241 (379)
T ss_pred CChHHHHHHhcCCCeEEE-----EEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccchh
Confidence 86 99999999999885 48999999999999999984 3889999999999888899999999999
Q ss_pred CCCCHHHHHHhHcC----CCCHHHHHHHHHHHHHhCCCCCCcEEEEEEeC
Q 022365 252 KVMKNQEAVDLVKP----IKDPQAAAKRLTTEALARKSKDDISCIVIRFG 297 (298)
Q Consensus 252 d~l~~~ei~~~~~~----~~~~~~~a~~L~~~a~~~~~~DNiTvivv~~~ 297 (298)
|.++++|++++++. ..++..+|..+++.++-+|+.||+|+|+|.|.
T Consensus 242 DVMtneelcefv~sRl~Vt~dL~~vcn~VvDtCLhKGSRDNMsivlvcfp 291 (379)
T KOG0697|consen 242 DVMTNEELCEFVKSRLEVTSDLEEVCNDVVDTCLHKGSRDNMSIVLVCFP 291 (379)
T ss_pred hhcccHHHHHHHHhhheecccHHHHHHHHHHHHHhccCccCceEEEEecC
Confidence 99999999999976 47899999999999999999999999999874
No 5
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=5.3e-42 Score=306.98 Aligned_cols=247 Identities=47% Similarity=0.691 Sum_probs=212.2
Q ss_pred EEEEeeecCCCCCCCceEEEEeec----cCCc-eeEEEEEEcCCCCchHHHHHHHHHHHHHHhhcCCCcC---HHHHHHH
Q 022365 50 HGYHLVEGQSGHDMEDYLVAEYRK----KKNH-VLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKD---PKAAITN 121 (298)
Q Consensus 50 ~~~~s~~G~r~~~neD~~~~~~~~----~~~~-~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~~---~~~~l~~ 121 (298)
.++.+..|.++ .+||++...... ..+. ...+|||||||||..+|.++.+.+...+.+...+... ...++++
T Consensus 42 ~~~~~~~~~r~-~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~a~~~ 120 (330)
T KOG0698|consen 42 GSLLSIRGRRR-KMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKDALRR 120 (330)
T ss_pred eEEEecCCCCC-ccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHH
Confidence 44447777777 899999864431 1233 5799999999999999999999999999988776664 6899999
Q ss_pred HHH-HHHHHHHHhcccCCCCCCceEEEEEEeCCeEEEEEcCCceEEEEecC-ceeecCCCCCChh--HHHHHHHcCCeee
Q 022365 122 AYR-STDQFILENSMQLGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERG-SANQITVDHEPHA--ERRRIEKQGGFVT 197 (298)
Q Consensus 122 a~~-~~~~~l~~~~~~~~~~~~tt~~~~~i~~~~~~~a~vGDsr~~l~r~~-~~~~lt~dh~~~~--e~~ri~~~gg~~~ 197 (298)
+|. +++..+..........|+|++++++..+..+|+||+||||+++.+.+ +..+||.||.+.. |+.||.++||.+.
T Consensus 121 ~F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG~v~ 200 (330)
T KOG0698|consen 121 AFLTKTDSEFLEKREDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGGRVS 200 (330)
T ss_pred HHHHHHHHHHHhhccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCCEEE
Confidence 999 69999987622224556666666666566999999999999999865 7999999999964 9999999999999
Q ss_pred cCCCCcCccCCceeeecccCCcccc-CcccccceEEEEEeCCCCeEEEEEcCCccCCCCHHHHHHhHcC----CCCHHHH
Q 022365 198 SLPGDVPRVNGQLAVARAFGDQSLK-AHLSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQEAVDLVKP----IKDPQAA 272 (298)
Q Consensus 198 ~~~~~~~~~~~~~~ltr~lG~~~~~-~~~~~~p~~~~~~l~~~~d~lvL~SDGl~d~l~~~ei~~~~~~----~~~~~~~ 272 (298)
...+ .+|++|.++++|+||+..+| +.+.++|++....+...++||||+||||||.++++|+.++++. ...+..+
T Consensus 201 ~~~~-~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~a 279 (330)
T KOG0698|consen 201 NWGG-VWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISSPLAA 279 (330)
T ss_pred EcCC-cceEeceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhccccHHHH
Confidence 6554 46899999999999999999 8899999999999999889999999999999999999999988 5689999
Q ss_pred HHHHHHHHHhCCCCCCcEEEEEEeCC
Q 022365 273 AKRLTTEALARKSKDDISCIVIRFGQ 298 (298)
Q Consensus 273 a~~L~~~a~~~~~~DNiTvivv~~~~ 298 (298)
+..|...|..+++.||+|||||.|..
T Consensus 280 ~~~l~~~a~~~~s~DnitvvvV~l~~ 305 (330)
T KOG0698|consen 280 AKLLATEALSRGSKDNITVVVVRLKS 305 (330)
T ss_pred HHHHHHHHhhcCCCCCeEEEEEEecC
Confidence 99999999999999999999999863
No 6
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=6.9e-43 Score=303.47 Aligned_cols=236 Identities=43% Similarity=0.660 Sum_probs=194.2
Q ss_pred eEEEEeeecCCCCCCCceEEEEeecc---CCceeEEEEEEcCCCCchHHHHHHHHHHHHHHhhcCCCc--CHHHHHHHHH
Q 022365 49 SHGYHLVEGQSGHDMEDYLVAEYRKK---KNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWK--DPKAAITNAY 123 (298)
Q Consensus 49 ~~~~~s~~G~r~~~neD~~~~~~~~~---~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~--~~~~~l~~a~ 123 (298)
.+|+.+..|.|. .|||.+++..... ......+|+|+|||||.+++.+++..+...+.+...+.. .+..+|..+|
T Consensus 1 ~~~~~~~~g~r~-~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~ 79 (254)
T PF00481_consen 1 DYGVSSMQGVRK-EMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAF 79 (254)
T ss_dssp EEEEEEEECTSS-SHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcCeecCCCCCC-cccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhccccee
Confidence 378999999998 8999998765432 356789999999999999999999999976666443222 4789999999
Q ss_pred HH-HHHHHHHhccc-CCCCCCceEEEEEEeCCeEEEEEcCCceEEEEecCcee-ecCCCCCChh--HHHHHHHcCCeeec
Q 022365 124 RS-TDQFILENSMQ-LGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSAN-QITVDHEPHA--ERRRIEKQGGFVTS 198 (298)
Q Consensus 124 ~~-~~~~l~~~~~~-~~~~~~tt~~~~~i~~~~~~~a~vGDsr~~l~r~~~~~-~lt~dh~~~~--e~~ri~~~gg~~~~ 198 (298)
.+ +++.+...... ....+|||++++++.++++|+|||||||+|+++++... +||.||++.+ |+.||.+.|+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~ 159 (254)
T PF00481_consen 80 LAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSE 159 (254)
T ss_dssp HHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEE
T ss_pred eecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccceeecccccccc
Confidence 99 88888763221 23567888888999999999999999999999999888 9999999986 99999999999985
Q ss_pred CCCCcCccCCceeeecccCCccccC----cccccceEEEEEeCCCCeEEEEEcCCccCCCCHHHHHHhHcCCCC----HH
Q 022365 199 LPGDVPRVNGQLAVARAFGDQSLKA----HLSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQEAVDLVKPIKD----PQ 270 (298)
Q Consensus 199 ~~~~~~~~~~~~~ltr~lG~~~~~~----~~~~~p~~~~~~l~~~~d~lvL~SDGl~d~l~~~ei~~~~~~~~~----~~ 270 (298)
..+..+.+.+||+||+..+|+ .+.++|++..+++.+++.+||||||||||+++++|+.+++.+..+ |+
T Consensus 160 ----~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~ 235 (254)
T PF00481_consen 160 ----NGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQ 235 (254)
T ss_dssp ----TEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHH
T ss_pred ----chhhhhccccccccccccccccccceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHH
Confidence 357788889999999999998 799999999999999866999999999999999999999987644 89
Q ss_pred HHHHHHHHHHHhCCCCCCc
Q 022365 271 AAAKRLTTEALARKSKDDI 289 (298)
Q Consensus 271 ~~a~~L~~~a~~~~~~DNi 289 (298)
.+|+.|++.|+++|+.|||
T Consensus 236 ~~a~~L~~~A~~~gs~DNi 254 (254)
T PF00481_consen 236 EAAEKLVDEAIARGSKDNI 254 (254)
T ss_dssp HHHHHHHHHHHHTTHHSHE
T ss_pred HHHHHHHHHHHhcCCCCCC
Confidence 9999999999999999996
No 7
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=7.9e-40 Score=310.68 Aligned_cols=240 Identities=21% Similarity=0.289 Sum_probs=181.0
Q ss_pred ceeEEEEeeecCCCCCCCceEEEEeec-----cCC---ceeEEEEEEcCCCCchHHHHHH----HHHHHHHHhhcCCCcC
Q 022365 47 KVSHGYHLVEGQSGHDMEDYLVAEYRK-----KKN---HVLGLFAIFDGHLGDRVPTYLK----DNLFNNILEESNFWKD 114 (298)
Q Consensus 47 ~~~~~~~s~~G~r~~~neD~~~~~~~~-----~~~---~~~~l~~V~DG~GG~~~a~~~~----~~~~~~~~~~~~~~~~ 114 (298)
.+.++..|++|.+|+.|||++.+.... ..+ ....+|+|||||||+.++..++ +.+...+.+.......
T Consensus 374 ~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~~ 453 (645)
T PRK14559 374 SLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDELP 453 (645)
T ss_pred eEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhccccc
Confidence 488999999999777999998653210 011 1357999999999986554444 4443333322111112
Q ss_pred HHHHHHHHHHHHHHHHHHhccc----CCCCCCceEEEEEEeCCeEEEEEcCCceEEEE-ecCceeecCCCCCChhHHHHH
Q 022365 115 PKAAITNAYRSTDQFILENSMQ----LGPGGSTAVTAIVIDGKDLWVANVGDSRAVVC-ERGSANQITVDHEPHAERRRI 189 (298)
Q Consensus 115 ~~~~l~~a~~~~~~~l~~~~~~----~~~~~~tt~~~~~i~~~~~~~a~vGDsr~~l~-r~~~~~~lt~dh~~~~e~~ri 189 (298)
....|++++..+|+.|.+.... ....||||++++++.++++|++||||||+|++ |+|++.+||+||++.++ +
T Consensus 454 ~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~---l 530 (645)
T PRK14559 454 DEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQR---E 530 (645)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHHH---H
Confidence 4677999999999999875432 23468999999999999999999999999998 57899999999998764 4
Q ss_pred HHcCCeeecCCCCcCccCCceeeecccCCccccCcccccceEEEEEeCCCCeEEEEEcCCccCC--CCH---HHHHHhHc
Q 022365 190 EKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWKV--MKN---QEAVDLVK 264 (298)
Q Consensus 190 ~~~gg~~~~~~~~~~~~~~~~~ltr~lG~~~~~~~~~~~p~~~~~~l~~~~d~lvL~SDGl~d~--l~~---~ei~~~~~ 264 (298)
++.| ....+... .++.+.+||+||+...+ ..+|++..+.+.++ |+||||||||||+ +.. +++..++.
T Consensus 531 v~~G-i~~~~a~~---~p~~~~LTrALG~~~~~---~l~Pdi~~~~L~~g-D~lLLCSDGL~D~~~ve~~~~~~l~~il~ 602 (645)
T PRK14559 531 IQRG-VEPQIAYA---RPDAYQLTQALGPRDNS---AIQPDIQFLEIEED-TLLLLCSDGLSDNDLLETHWQTHLLPLLS 602 (645)
T ss_pred HHhC-CCHHHHhc---CcccceeeeccCCCCCC---cccceEEEEEcCCC-CEEEEECCCCCCCcccchHHHHHHHHHHh
Confidence 4555 22222222 23456999999986533 35899999999987 9999999999994 554 45667777
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcEEEEEEeC
Q 022365 265 PIKDPQAAAKRLTTEALARKSKDDISCIVIRFG 297 (298)
Q Consensus 265 ~~~~~~~~a~~L~~~a~~~~~~DNiTvivv~~~ 297 (298)
...+++++++.|++.|+.+|+.||+|+|+|+++
T Consensus 603 ~~~~l~~aa~~Li~~Al~~gg~DNITvIvV~l~ 635 (645)
T PRK14559 603 SSANLDQGLNKLIDLANQYNGHDNITAILVRLK 635 (645)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCcEEEEEEEec
Confidence 777899999999999999999999999999985
No 8
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=6.8e-39 Score=277.78 Aligned_cols=240 Identities=44% Similarity=0.632 Sum_probs=201.4
Q ss_pred eEEEEeeecCCCCCCCceEEEEeeccCCceeEEEEEEcCCCCchHHHHHHHHHHHHHHhhcCC-----CcCHHHHHHHHH
Q 022365 49 SHGYHLVEGQSGHDMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNF-----WKDPKAAITNAY 123 (298)
Q Consensus 49 ~~~~~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~l~~a~ 123 (298)
.+++.+..|.|. .|||++++...... .+..+|+|||||||+..+.++++.+...+.+.... ...+...|+.+|
T Consensus 2 ~~~~~~~~g~r~-~neD~~~~~~~~~~-~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 79 (254)
T cd00143 2 SAGVSDKGGDRK-TNEDAVVIKPNLNN-EDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAF 79 (254)
T ss_pred ceeeecCCCCCC-CCcceEEEeccCCC-CCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 467777888887 89999987532110 25689999999999988888888888877764432 235677899999
Q ss_pred HHHHHHHHHhccc--CCCCCCceEEEEEEeCCeEEEEEcCCceEEEEecCceeecCCCCCChh--HHHHHHHcCCeeecC
Q 022365 124 RSTDQFILENSMQ--LGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHA--ERRRIEKQGGFVTSL 199 (298)
Q Consensus 124 ~~~~~~l~~~~~~--~~~~~~tt~~~~~i~~~~~~~a~vGDsr~~l~r~~~~~~lt~dh~~~~--e~~ri~~~gg~~~~~ 199 (298)
+.+++.+...... ....++||++++++..+.++++|+||||+|++|++++.++|.||++.+ +..|+.+.++....
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~- 158 (254)
T cd00143 80 LRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVSN- 158 (254)
T ss_pred HHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEEe-
Confidence 9999999876542 235678999999999999999999999999999999999999999985 78888888876541
Q ss_pred CCCcCccCCceeeecccCCccccCcccccceEEEEEe-CCCCeEEEEEcCCccCCCCHHHHHHhHcCCC---CHHHHHHH
Q 022365 200 PGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPI-DPSIEFLILASDGLWKVMKNQEAVDLVKPIK---DPQAAAKR 275 (298)
Q Consensus 200 ~~~~~~~~~~~~ltr~lG~~~~~~~~~~~p~~~~~~l-~~~~d~lvL~SDGl~d~l~~~ei~~~~~~~~---~~~~~a~~ 275 (298)
.+.++...+|++||...+++.+..+|++..+.+ +++ |+|||||||||+++++++|.+++.... +++++|+.
T Consensus 159 ----~~~~~~~~~t~~lG~~~~~~~~~~~~~~~~~~l~~~~-d~ill~SDG~~~~l~~~~i~~~~~~~~~~~~~~~~a~~ 233 (254)
T cd00143 159 ----GRVPGVLAVTRALGDFDLKPGVSAEPDVTVVKLTEDD-DFLILASDGLWDVLSNQEAVDIVRSELAKEDLQEAAQE 233 (254)
T ss_pred ----CEEcCceeeccccCCccccCCEEcCCeEEEEEeCCCC-cEEEEECCCCeeccChHHHHHHHHHHhcccCHHHHHHH
Confidence 244455699999999977766678999999999 776 999999999999999999999998866 79999999
Q ss_pred HHHHHHhCCCCCCcEEEEEEe
Q 022365 276 LTTEALARKSKDDISCIVIRF 296 (298)
Q Consensus 276 L~~~a~~~~~~DNiTvivv~~ 296 (298)
|++.|..++..||+|+|+++|
T Consensus 234 l~~~a~~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 234 LVDLALRRGSHDNITVVVVRL 254 (254)
T ss_pred HHHHHHhCCCCCCEEEEEEeC
Confidence 999999999999999999975
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=2.7e-38 Score=274.47 Aligned_cols=239 Identities=46% Similarity=0.672 Sum_probs=202.5
Q ss_pred ceeEEEEeeecCCCCCCCceEEEEeeccCCceeEEEEEEcCCCCchHHHHHHHHHHHHHHhhcCCCc----CHHHHHHHH
Q 022365 47 KVSHGYHLVEGQSGHDMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWK----DPKAAITNA 122 (298)
Q Consensus 47 ~~~~~~~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~----~~~~~l~~a 122 (298)
.+.+++.+..|.|. .|||++++... ......+|+|||||||..+|.++++.+...+.+...... .+...|.++
T Consensus 5 ~~~~~~~~~~~~r~-~neD~~~~~~~--~~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (255)
T smart00332 5 GLRYGLSSMQGVRK-PMEDAHVITPD--LSDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRKA 81 (255)
T ss_pred ceeEEEecCCCCCC-CCcceEEEecc--CCCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHH
Confidence 36788877767666 99999986532 124578999999999999999999999988877543332 478889999
Q ss_pred HHHHHHHHHHhcccC--CCCCCceEEEEEEeCCeEEEEEcCCceEEEEecCceeecCCCCCChh--HHHHHHHcCCeeec
Q 022365 123 YRSTDQFILENSMQL--GPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHA--ERRRIEKQGGFVTS 198 (298)
Q Consensus 123 ~~~~~~~l~~~~~~~--~~~~~tt~~~~~i~~~~~~~a~vGDsr~~l~r~~~~~~lt~dh~~~~--e~~ri~~~gg~~~~ 198 (298)
+.++++.+....... ...++||++++++..+.++++|+||||+|++|++++.++|.||++.+ |..|+...++.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~ 161 (255)
T smart00332 82 FLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVIN 161 (255)
T ss_pred HHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEEC
Confidence 999999998766543 25689999999999999999999999999999999999999999975 78889888887653
Q ss_pred CCCCcCccCCceeeecccCCccccCcccccceEEEEEe-CCCCeEEEEEcCCccCCCCHHHHHHhHcCCC---CHHHHHH
Q 022365 199 LPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPI-DPSIEFLILASDGLWKVMKNQEAVDLVKPIK---DPQAAAK 274 (298)
Q Consensus 199 ~~~~~~~~~~~~~ltr~lG~~~~~~~~~~~p~~~~~~l-~~~~d~lvL~SDGl~d~l~~~ei~~~~~~~~---~~~~~a~ 274 (298)
. +.++.+.+|+++|...+++.+...|++...++ .++ |+|||||||||++++++++.+++.+.. ++.++++
T Consensus 162 ~-----~~~~~~~lt~~~g~~~~~~~i~~~p~~~~~~~~~~~-d~ill~SDGv~~~l~~~~i~~~~~~~~~~~~~~~~~~ 235 (255)
T smart00332 162 G-----RVNGVLALSRAIGDFFLKPYVSAEPDVTVVELTEKD-DFLILASDGLWDVLSNQEVVDIVRKHLSKSDPEEAAK 235 (255)
T ss_pred C-----eECCeEecccccCCHhhcCCeEeeeEEEEEEecCCC-cEEEEECCccccCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 2 33445699999999988888889999999996 776 999999999999999999999998765 5999999
Q ss_pred HHHHHHHhCCCCCCcEEEEE
Q 022365 275 RLTTEALARKSKDDISCIVI 294 (298)
Q Consensus 275 ~L~~~a~~~~~~DNiTvivv 294 (298)
.|++.|..++..||+|+|+|
T Consensus 236 ~l~~~a~~~~~~Dn~T~ivv 255 (255)
T smart00332 236 RLIDLALARGSKDNITVIVV 255 (255)
T ss_pred HHHHHHHHcCCCCCeEEEEC
Confidence 99999999999999999985
No 10
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-35 Score=255.22 Aligned_cols=157 Identities=37% Similarity=0.644 Sum_probs=141.0
Q ss_pred CCCCCceEEEEEEeCCeEEEEEcCCceEEEEecCceeecCCCCCChh--HHHHHHHcCCeeecCCCCcCccCCceeeecc
Q 022365 138 GPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHA--ERRRIEKQGGFVTSLPGDVPRVNGQLAVARA 215 (298)
Q Consensus 138 ~~~~~tt~~~~~i~~~~~~~a~vGDsr~~l~r~~~~~~lt~dh~~~~--e~~ri~~~gg~~~~~~~~~~~~~~~~~ltr~ 215 (298)
+...|||+|++++.+.++|+||.||||+++.|+|+..-++.||.+.. |..||..+||.++-. +|++|.++++|+
T Consensus 327 G~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlD----GRVNGGLNLSRA 402 (542)
T KOG0699|consen 327 GEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLD----GRVNGGLNLSRA 402 (542)
T ss_pred CCCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeec----ceecCccchhhh
Confidence 34568999999999999999999999999999999999999999987 889999999999832 799999999999
Q ss_pred cCCccccCc---------ccccceEEEEEeCCCCeEEEEEcCCccCCCCHHHHHHhHcC----CCCHHHHHHHHHHHHHh
Q 022365 216 FGDQSLKAH---------LSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQEAVDLVKP----IKDPQAAAKRLTTEALA 282 (298)
Q Consensus 216 lG~~~~~~~---------~~~~p~~~~~~l~~~~d~lvL~SDGl~d~l~~~ei~~~~~~----~~~~~~~a~~L~~~a~~ 282 (298)
||+..||.. +++-|+|....|.+.++|+|+++||+|++++.+++.++++. ......+++.|++.++.
T Consensus 403 ~GDHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLA 482 (542)
T KOG0699|consen 403 FGDHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACLA 482 (542)
T ss_pred hhhhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcC
Confidence 999999853 67889999999999999999999999999999999887753 46788999999999997
Q ss_pred CC------CCCCcEEEEEEeCC
Q 022365 283 RK------SKDDISCIVIRFGQ 298 (298)
Q Consensus 283 ~~------~~DNiTvivv~~~~ 298 (298)
.. ..||+|+|++.|++
T Consensus 483 p~T~GDGTGCDNMT~ii~~Fkr 504 (542)
T KOG0699|consen 483 PSTDGDGTGCDNMTVIITTFKR 504 (542)
T ss_pred CCCCCCCcCCCcceEEEEEecc
Confidence 53 46999999999864
No 11
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.97 E-value=4.4e-31 Score=231.88 Aligned_cols=220 Identities=36% Similarity=0.490 Sum_probs=171.8
Q ss_pred CCceEEEEeeccCCceeEEEEEEcCCCCchHHHHHHHHHHHHHHhh-------------cC-------------------
Q 022365 63 MEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEE-------------SN------------------- 110 (298)
Q Consensus 63 neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~-------------~~------------------- 110 (298)
-||.+-+... ..++..|+||+|||||.++++++.+.++..+..+ .+
T Consensus 85 ~edrv~~~~s--~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~ 162 (390)
T KOG0700|consen 85 EEDRVSVAVS--EENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSA 162 (390)
T ss_pred ccCcceeeee--ccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhccccc
Confidence 4666643322 2467899999999999999999999999987621 00
Q ss_pred --CCcCHHHHHHHHHHHHHHHHHHhcccC------CCCCCceEEEEEEeCCeEEEEEcCCceEEEEe---cC---ceeec
Q 022365 111 --FWKDPKAAITNAYRSTDQFILENSMQL------GPGGSTAVTAIVIDGKDLWVANVGDSRAVVCE---RG---SANQI 176 (298)
Q Consensus 111 --~~~~~~~~l~~a~~~~~~~l~~~~~~~------~~~~~tt~~~~~i~~~~~~~a~vGDsr~~l~r---~~---~~~~l 176 (298)
......++|.+||+++++.+....... -..+|+++++.++.++.+|+||+|||||+|-+ ++ ...||
T Consensus 163 ~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qL 242 (390)
T KOG0700|consen 163 DQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQL 242 (390)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEec
Confidence 134567899999999999986544222 12456666666888999999999999999964 33 46899
Q ss_pred CCCCCChh--HHHHHHHcCCeeecC-CCCcCccCCceeeecccCCcccc---------------------CcccccceEE
Q 022365 177 TVDHEPHA--ERRRIEKQGGFVTSL-PGDVPRVNGQLAVARAFGDQSLK---------------------AHLSSEPDVR 232 (298)
Q Consensus 177 t~dh~~~~--e~~ri~~~gg~~~~~-~~~~~~~~~~~~ltr~lG~~~~~---------------------~~~~~~p~~~ 232 (298)
|.||+..+ |+.||+..+...... -..+-|..|.+.++|+||+..+| |+++++|.++
T Consensus 243 S~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~ 322 (390)
T KOG0700|consen 243 STDHNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSIT 322 (390)
T ss_pred ChhhccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEE
Confidence 99999886 899998886533321 12224888999999999999988 4588999999
Q ss_pred EEEeCCCCeEEEEEcCCccCCCCHHHHHHhHcCC----CCHHHHHHHHHHHHHhCC
Q 022365 233 HVPIDPSIEFLILASDGLWKVMKNQEAVDLVKPI----KDPQAAAKRLTTEALARK 284 (298)
Q Consensus 233 ~~~l~~~~d~lvL~SDGl~d~l~~~ei~~~~~~~----~~~~~~a~~L~~~a~~~~ 284 (298)
.++|.+.|.||||+|||||++|+++|+..++... ..-+.+|+.|++.|+.+.
T Consensus 323 ~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 323 HHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRA 378 (390)
T ss_pred EEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999873 233577899999888654
No 12
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.95 E-value=5.5e-26 Score=193.53 Aligned_cols=203 Identities=21% Similarity=0.245 Sum_probs=139.9
Q ss_pred CCCceEEEEeeccCCceeEEEEEEcCCCCch--------HHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHh
Q 022365 62 DMEDYLVAEYRKKKNHVLGLFAIFDGHLGDR--------VPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTDQFILEN 133 (298)
Q Consensus 62 ~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~l~~~ 133 (298)
..||+|++.. +....+.|||||+|||. .+..+.+.+.+.+.+......+|...|..++.++ ...
T Consensus 90 ~GEDa~Fvss----~~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l----~~~ 161 (330)
T KOG1379|consen 90 GGEDAWFVSS----NPHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAEL----KSQ 161 (330)
T ss_pred CCCcceeecc----CcccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHH----hhc
Confidence 5799999752 24567999999999982 3444444444444444445557888888877664 322
Q ss_pred cccCCCCCCceEEEEEEe--CCeEEEEEcCCceEEEEecCceeecCCCCCChhHHHHHHHcCCeeecCCCCcCccCCcee
Q 022365 134 SMQLGPGGSTAVTAIVID--GKDLWVANVGDSRAVVCERGSANQITVDHEPHAERRRIEKQGGFVTSLPGDVPRVNGQLA 211 (298)
Q Consensus 134 ~~~~~~~~~tt~~~~~i~--~~~~~~a~vGDsr~~l~r~~~~~~lt~dh~~~~e~~ri~~~gg~~~~~~~~~~~~~~~~~ 211 (298)
+.. .-|++|++++.+. ++++|++|+|||...++|+|++.+-|..+... +... ......+. .
T Consensus 162 -~~~-~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~-----------FN~P--yQLs~~p~--~ 224 (330)
T KOG1379|consen 162 -KVP-IVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHY-----------FNTP--YQLSSPPE--G 224 (330)
T ss_pred -CCC-CCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheec-----------cCCc--eeeccCCc--c
Confidence 222 2344444445554 78999999999999999999999988765422 1111 00000000 0
Q ss_pred eecccCCccccCcccccceEEEEEeCCCCeEEEEEcCCccCCCCHHHHHHhHcC-----CCCHHHHHHHHHHHHHh----
Q 022365 212 VARAFGDQSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQEAVDLVKP-----IKDPQAAAKRLTTEALA---- 282 (298)
Q Consensus 212 ltr~lG~~~~~~~~~~~p~~~~~~l~~~~d~lvL~SDGl~d~l~~~ei~~~~~~-----~~~~~~~a~~L~~~a~~---- 282 (298)
...++++. .-..+...+.+++| |+|||+||||||++.+++|..++.. ..+++..|+.|++.|.+
T Consensus 225 ~~~~~~d~------p~~ad~~~~~v~~G-DvIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d 297 (330)
T KOG1379|consen 225 YSSYISDV------PDSADVTSFDVQKG-DVIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSRD 297 (330)
T ss_pred ccccccCC------ccccceEEEeccCC-CEEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhccC
Confidence 12234443 24467899999999 9999999999999999999999865 35789999999999962
Q ss_pred -------------------CCCCCCcEEEEEEe
Q 022365 283 -------------------RKSKDDISCIVIRF 296 (298)
Q Consensus 283 -------------------~~~~DNiTvivv~~ 296 (298)
.|+.||||+||..+
T Consensus 298 ~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~v 330 (330)
T KOG1379|consen 298 PKFQSPFAQAAREHGFKAYGGKPDDITVVLSSV 330 (330)
T ss_pred cCcCChHHHHHHHhCcccCCCCcccEEEEEecC
Confidence 24689999998753
No 13
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.94 E-value=2e-25 Score=190.31 Aligned_cols=221 Identities=31% Similarity=0.464 Sum_probs=163.6
Q ss_pred ceeEEEEEEcCCCCchHHHHHHHHHHHHHHhhcC----------------C-----------------C-------cCHH
Q 022365 77 HVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESN----------------F-----------------W-------KDPK 116 (298)
Q Consensus 77 ~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~----------------~-----------------~-------~~~~ 116 (298)
.+..+|.+||||.|..+|-.+++.+...+.+... + . .-..
T Consensus 142 ~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LVi 221 (493)
T KOG1323|consen 142 ADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLVI 221 (493)
T ss_pred CcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhhH
Confidence 4568999999999998887776655444432100 0 0 0124
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCceEEEEEEeCCeEEEEEcCCceEEEEecCceeecCCCCCChhHHHHHHHcCCee
Q 022365 117 AAITNAYRSTDQFILENSMQLGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHAERRRIEKQGGFV 196 (298)
Q Consensus 117 ~~l~~a~~~~~~~l~~~~~~~~~~~~tt~~~~~i~~~~~~~a~vGDsr~~l~r~~~~~~lt~dh~~~~e~~ri~~~gg~~ 196 (298)
-+|..||+..++.|.+........||||+.+++.--+++|++|.||||++++|+++++.++++-++..|++|+...+-.-
T Consensus 222 GAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPetERqRlQ~Laf~~ 301 (493)
T KOG1323|consen 222 GALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPETERQRLQELAFRN 301 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcHHHHHHHHHHhhcC
Confidence 57899999999999877665556666666666666899999999999999999999999999999999999998763211
Q ss_pred ecC--------------------------------------------------CCCcCccCCceeeecccCCcccc----
Q 022365 197 TSL--------------------------------------------------PGDVPRVNGQLAVARAFGDQSLK---- 222 (298)
Q Consensus 197 ~~~--------------------------------------------------~~~~~~~~~~~~ltr~lG~~~~~---- 222 (298)
++. .+...+.-+.+.++|.||+..++
T Consensus 302 PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lkv~ds 381 (493)
T KOG1323|consen 302 PELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLKVVDS 381 (493)
T ss_pred hHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceeeeecC
Confidence 110 01112333456789999998766
Q ss_pred -----CcccccceEEEEEeCC----CCeEEEEEcCCccCCCCHHHHHHhHcCC------CCH---HHHHHHHHHHHHh--
Q 022365 223 -----AHLSSEPDVRHVPIDP----SIEFLILASDGLWKVMKNQEAVDLVKPI------KDP---QAAAKRLTTEALA-- 282 (298)
Q Consensus 223 -----~~~~~~p~~~~~~l~~----~~d~lvL~SDGl~d~l~~~ei~~~~~~~------~~~---~~~a~~L~~~a~~-- 282 (298)
|.+.+.|+++...+.. .||++||+|||+||.++++|+..+++.. .+| ..+|+.|+..|..
T Consensus 382 nl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqdlva~arg~~ 461 (493)
T KOG1323|consen 382 NLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQAAQDLVAAARGQQ 461 (493)
T ss_pred CcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhcCcc
Confidence 4577888888887753 2689999999999999999999988763 233 3567888887752
Q ss_pred -----------CCCCCCcEEEEEEeC
Q 022365 283 -----------RKSKDDISCIVIRFG 297 (298)
Q Consensus 283 -----------~~~~DNiTvivv~~~ 297 (298)
-++.|||||.||-+.
T Consensus 462 k~rgWr~~n~~lgSgDDIsVfVIPL~ 487 (493)
T KOG1323|consen 462 KDRGWRMNNGGLGSGDDISVFVIPLK 487 (493)
T ss_pred CCCceeccCCCcCCCCceEEEEEecc
Confidence 246799999999764
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=2.4e-22 Score=191.73 Aligned_cols=241 Identities=27% Similarity=0.393 Sum_probs=202.0
Q ss_pred eeEEEEeeecCCCCCCCceEEEEeeccCCceeEEEEEEcCCCCchHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHH
Q 022365 48 VSHGYHLVEGQSGHDMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTD 127 (298)
Q Consensus 48 ~~~~~~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ 127 (298)
|.+|++...|.|. .+-=+.. .+..+-++....|+.+||-+..+..+.+...+...+.++.....+-.+.|+++|...+
T Consensus 522 ~t~Gv~~~~gqrn-k~c~~~~-~v~nf~~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~et~~mr~~fl~~~ 599 (1081)
T KOG0618|consen 522 WTYGVAGVSGQRN-KVCSRAV-WVENFFLNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGNETEQMRNTFLRLN 599 (1081)
T ss_pred eeeccchhccccc-chhhhhh-hhhhcccCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHh
Confidence 5699999999998 3433332 2333345667899999999999999999999999998877666666777999999999
Q ss_pred HHHHHhcccCCCCCCceEEEEEEeC-------CeEEEEEcCCceEEEEecCceeecCCCCCCh---hHHHHHHHcCCeee
Q 022365 128 QFILENSMQLGPGGSTAVTAIVIDG-------KDLWVANVGDSRAVVCERGSANQITVDHEPH---AERRRIEKQGGFVT 197 (298)
Q Consensus 128 ~~l~~~~~~~~~~~~tt~~~~~i~~-------~~~~~a~vGDsr~~l~r~~~~~~lt~dh~~~---~e~~ri~~~gg~~~ 197 (298)
+++...... .++..+.+-+..+ .+++.||+|+|.+++.++|+-.++|+-.... .|.+||++.+|++.
T Consensus 600 rklg~~g~~---lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~RI~~~~g~i~ 676 (1081)
T KOG0618|consen 600 RKLGEEGQV---LGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKRIVDSKGFIT 676 (1081)
T ss_pred hhhhhhhcc---ccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHHHHHhcCeec
Confidence 999655433 2333333333322 4689999999999999999988888755333 38999999999999
Q ss_pred cCCCCcCccCCceeeecccCCccccCcccccceEEEEEeCCCCeEEEEEcCCccCCCCHHHHHHhHcCCCCHHHHHHHHH
Q 022365 198 SLPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQEAVDLVKPIKDPQAAAKRLT 277 (298)
Q Consensus 198 ~~~~~~~~~~~~~~ltr~lG~~~~~~~~~~~p~~~~~~l~~~~d~lvL~SDGl~d~l~~~ei~~~~~~~~~~~~~a~~L~ 277 (298)
+. .+.+|....||.+|.....|++.+.|++....|.+.|++||+++-++|++|+-+++.+.++...+|-.+|++|+
T Consensus 677 ed----~k~ngvt~~tR~iG~~~l~P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vRn~~dpL~AAkKL~ 752 (1081)
T KOG0618|consen 677 ED----NKLNGVTSSTRAIGPFSLFPHVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVRNVEDPLLAAKKLC 752 (1081)
T ss_pred CC----CeeeceeeeeeecccccccccccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHhcCCchHHHHHHHH
Confidence 52 57888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCcEEEEEEeC
Q 022365 278 TEALARKSKDDISCIVIRFG 297 (298)
Q Consensus 278 ~~a~~~~~~DNiTvivv~~~ 297 (298)
+.|+.+|..||++|+||++.
T Consensus 753 d~AqSYgc~~nv~vlVv~l~ 772 (1081)
T KOG0618|consen 753 DLAQSYGCAENVSVLVVRLN 772 (1081)
T ss_pred HHHHhcccccCeeEEEEEee
Confidence 99999999999999999974
No 15
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.86 E-value=3.9e-21 Score=162.45 Aligned_cols=178 Identities=20% Similarity=0.267 Sum_probs=97.0
Q ss_pred EeeecCCCCCCCceEEEEeeccCCceeEEEEEEcCCCCchH----HHHHHHHHHHHHHhhcCCCcC--HHHHHHHHHHHH
Q 022365 53 HLVEGQSGHDMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRV----PTYLKDNLFNNILEESNFWKD--PKAAITNAYRST 126 (298)
Q Consensus 53 ~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~----a~~~~~~~~~~~~~~~~~~~~--~~~~l~~a~~~~ 126 (298)
.++.|.+. .|||++.+... .+..+++||||+||... |..+++.+...+......... ....++.+...+
T Consensus 3 ~sh~~~~~-~nqD~~~~~~~----~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 77 (212)
T PF13672_consen 3 RSHRGRGA-PNQDAFGIRTD----DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEI 77 (212)
T ss_dssp ----TTSS-S--EEEEEE-T----CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCC-CCCCCEEeeeC----CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 36778887 89999985422 33467799999998754 444555555555544322211 122233333333
Q ss_pred HHHH-----HHhcccCCCCCCceEEEEEEeCCeEEEEEcCCceEEE-EecCceeecCCCCCChhHHHHHHHcCCeeecCC
Q 022365 127 DQFI-----LENSMQLGPGGSTAVTAIVIDGKDLWVANVGDSRAVV-CERGSANQITVDHEPHAERRRIEKQGGFVTSLP 200 (298)
Q Consensus 127 ~~~l-----~~~~~~~~~~~~tt~~~~~i~~~~~~~a~vGDsr~~l-~r~~~~~~lt~dh~~~~e~~ri~~~gg~~~~~~ 200 (298)
...+ ..........++||++++++.++.++++|+||||+|+ .++|++..++.+|+....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~~~--------------- 142 (212)
T PF13672_consen 78 LSIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSGEYP--------------- 142 (212)
T ss_dssp HHHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BHHHH---------------
T ss_pred HHHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccchhh---------------
Confidence 2221 1111223467889999999999999999999999965 579999999999873311
Q ss_pred CCcCccCCceeeecccCCccccCcccccceEEEEEeCCCCeEEEEEcCCccCCCCHHH-HHHhHcC
Q 022365 201 GDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQE-AVDLVKP 265 (298)
Q Consensus 201 ~~~~~~~~~~~ltr~lG~~~~~~~~~~~p~~~~~~l~~~~d~lvL~SDGl~d~l~~~e-i~~~~~~ 265 (298)
..++.+..... ....++..+++.++ +.|||||||||+.+...+ +..++..
T Consensus 143 ----------~~~~~~~~~~~----~~~~~~~~~~~~~~-d~ilL~SDG~~~~l~~~~~~~~~l~~ 193 (212)
T PF13672_consen 143 ----------NQTRSLTGDDP----EPDVQYGSIPLEEG-DVILLCSDGVWDNLRSYEDLEQFLKD 193 (212)
T ss_dssp ----------HCTTSCCHHCC----CTETEEEEEE--TT--EEEEE-HHHHTTS-HHHHHHHH---
T ss_pred ----------hhhhccCcccc----ccCCeEEEEEcCCC-CEEEEECcCccccCCCHHHHHHHhhh
Confidence 01222222110 23447777888888 999999999999998655 6666654
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.82 E-value=3.8e-18 Score=142.03 Aligned_cols=184 Identities=18% Similarity=0.162 Sum_probs=134.0
Q ss_pred eeEEEEeeecCCCCCCCceEEEEeeccCCceeEEEEEEcCCCCchHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHH
Q 022365 48 VSHGYHLVEGQSGHDMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTD 127 (298)
Q Consensus 48 ~~~~~~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ 127 (298)
+.++.....+.. ...|.+.+... +++..+++|+||+|++..|..++..+...+.+....... +...+..+|
T Consensus 4 ~~~~~~~~p~~~--~~GD~~~~~~~---~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~~----~~~~l~~~n 74 (193)
T smart00331 4 GLIAQYYEDATQ--VGGDFYDVVKL---PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGIS----LSQILERLN 74 (193)
T ss_pred eEEEEEEcchHh--cCccEEEEEEe---CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCCC----HHHHHHHHH
Confidence 556666666664 58899865422 244689999999999988888888877777654332222 555667777
Q ss_pred HHHHHhcccCCCCCCceEEEEEE--eCCeEEEEEcCCceEEEEe-cCceeecCCCCCChhHHHHHHHcCCeeecCCCCcC
Q 022365 128 QFILENSMQLGPGGSTAVTAIVI--DGKDLWVANVGDSRAVVCE-RGSANQITVDHEPHAERRRIEKQGGFVTSLPGDVP 204 (298)
Q Consensus 128 ~~l~~~~~~~~~~~~tt~~~~~i--~~~~~~~a~vGDsr~~l~r-~~~~~~lt~dh~~~~e~~ri~~~gg~~~~~~~~~~ 204 (298)
+.+..... ..+++|++++++ ..++++++|+||+|+|+++ ++...+.+.+
T Consensus 75 ~~l~~~~~---~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~------------------------- 126 (193)
T smart00331 75 RAIYENGE---DGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDD------------------------- 126 (193)
T ss_pred HHHHhcCC---CCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCC-------------------------
Confidence 77766521 346777777776 5789999999999999998 5555444433
Q ss_pred ccCCceeeecccCCccccCcccccceEEEEEeCCCCeEEEEEcCCccCCCCHHHHHHhHcCC--CCHHHHHHHHHHHHH
Q 022365 205 RVNGQLAVARAFGDQSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQEAVDLVKPI--KDPQAAAKRLTTEAL 281 (298)
Q Consensus 205 ~~~~~~~ltr~lG~~~~~~~~~~~p~~~~~~l~~~~d~lvL~SDGl~d~l~~~ei~~~~~~~--~~~~~~a~~L~~~a~ 281 (298)
.+..+|... ..+++...+++.+| |.|+|+|||||+.++++++.+++.+. .+++++++.|.+.+.
T Consensus 127 -------~~~~lG~~~-----~~~~~~~~~~l~~g-d~l~l~TDGl~e~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 127 -------LGAPLGLEP-----DVEVDVRELTLEPG-DLLLLYTDGLTEARNPERLEELLEELLGSPPAEIAQRILEELL 192 (193)
T ss_pred -------CCceeeeCC-----CCcceeEEEeeCCC-CEEEEECCCccccCChHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 223455543 34577889999998 99999999999999999999998875 468888888887654
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.73 E-value=2.2e-16 Score=155.30 Aligned_cols=187 Identities=17% Similarity=0.126 Sum_probs=132.5
Q ss_pred CCCCceEEEEeeccCCceeEEEEEEcCCCCchHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHhcccCCCC
Q 022365 61 HDMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTDQFILENSMQLGPG 140 (298)
Q Consensus 61 ~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~l~~~~~~~~~~ 140 (298)
..+.|.+.+.. .+++..+++|+||+|++..|...+..+...+.+......+ ...+++.+|+.+..... ..
T Consensus 565 ~vsGD~y~~~~---l~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~~----~~~ai~~lN~~L~~~~~---~~ 634 (764)
T TIGR02865 565 LVSGDSYSFGK---LSAGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGFD----REVAIKTVNSILSLRST---DE 634 (764)
T ss_pred cccCceEEEEE---ECCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhCCC---CC
Confidence 37999986532 1345678999999998876666665554444332211222 35567777877754422 23
Q ss_pred CCceEEEEEEe--CCeEEEEEcCCceEEEEecCceeecCCCCCChhHHHHHHHcCCeeecCCCCcCccCCceeeecccCC
Q 022365 141 GSTAVTAIVID--GKDLWVANVGDSRAVVCERGSANQITVDHEPHAERRRIEKQGGFVTSLPGDVPRVNGQLAVARAFGD 218 (298)
Q Consensus 141 ~~tt~~~~~i~--~~~~~~a~vGDsr~~l~r~~~~~~lt~dh~~~~e~~ri~~~gg~~~~~~~~~~~~~~~~~ltr~lG~ 218 (298)
..+|+.+++++ .+++.++++|+++.|+.|++++.+++..+. .+|.
T Consensus 635 ~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~l---------------------------------PlGi 681 (764)
T TIGR02865 635 KFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNL---------------------------------PIGI 681 (764)
T ss_pred eEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCc---------------------------------eeEe
Confidence 46777777775 589999999999999999988877754321 1333
Q ss_pred ccccCcccccceEEEEEeCCCCeEEEEEcCCccCCCCHHH-----HHHhHcC--CCCHHHHHHHHHHHHHhCC---CCCC
Q 022365 219 QSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQE-----AVDLVKP--IKDPQAAAKRLTTEALARK---SKDD 288 (298)
Q Consensus 219 ~~~~~~~~~~p~~~~~~l~~~~d~lvL~SDGl~d~l~~~e-----i~~~~~~--~~~~~~~a~~L~~~a~~~~---~~DN 288 (298)
.. ..+++..+.++.+| |+|||+|||++|..++.+ +.+++.. ..+|+++++.|++.+.+.. ..||
T Consensus 682 l~-----~~~~~~~~~~L~~G-D~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~~~~~p~ela~~Il~~a~~~~~~~~~DD 755 (764)
T TIGR02865 682 LD-----EVDVELVRKKLKNG-DLIVMVSDGVLEGEKEVEGKVLWLVRKLKETNTNDPEEIAEYLLEKAKELRSGKIKDD 755 (764)
T ss_pred cc-----CCccceEEEEeCCC-CEEEEECCCCCcCCcccccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCCC
Confidence 22 34567788899999 999999999999876433 6677754 3689999999999998643 4799
Q ss_pred cEEEEEEe
Q 022365 289 ISCIVIRF 296 (298)
Q Consensus 289 iTvivv~~ 296 (298)
+|++++++
T Consensus 756 ~Tvlvirv 763 (764)
T TIGR02865 756 MTVIVAKV 763 (764)
T ss_pred eEEEEEEe
Confidence 99999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.66 E-value=2.1e-14 Score=119.31 Aligned_cols=176 Identities=18% Similarity=0.192 Sum_probs=116.3
Q ss_pred ceeEEEEEEcCCCCchHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEEEEEe--CCe
Q 022365 77 HVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTDQFILENSMQLGPGGSTAVTAIVID--GKD 154 (298)
Q Consensus 77 ~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~l~~~~~~~~~~~~tt~~~~~i~--~~~ 154 (298)
++..+++|+|+.|.+-.|...+..+...+........+ ....+..+|+.+....... ...+|++++.++ .+.
T Consensus 2 ~~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~~----p~~~l~~ln~~l~~~~~~~--~~~~t~~~~~~d~~~~~ 75 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGLD----PEELLEALNRRLYRDLKGD--NRYATACYAIIDPETGT 75 (193)
T ss_dssp TTEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTTS----HHHHHHHHHHHHHHHTTTT--STTEEEEEEEEETTTTE
T ss_pred CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhhhc--cccceEEEEEecccceE
Confidence 34578899999997766666666655555443322223 4555666777775444331 244555555554 478
Q ss_pred EEEEEcCCceEEEEecCc--eeecCCCCCChhHHHHHHHcCCeeecCCCCcCccCCceeeecccCCccccCcccccceEE
Q 022365 155 LWVANVGDSRAVVCERGS--ANQITVDHEPHAERRRIEKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVR 232 (298)
Q Consensus 155 ~~~a~vGDsr~~l~r~~~--~~~lt~dh~~~~e~~ri~~~gg~~~~~~~~~~~~~~~~~ltr~lG~~~~~~~~~~~p~~~ 232 (298)
++++|+|+++++++++++ ...+... .-.||... ...+...
T Consensus 76 l~~~~aG~~~~l~~~~~~~~~~~~~~~---------------------------------~~~lG~~~-----~~~~~~~ 117 (193)
T PF07228_consen 76 LTYANAGHPPPLLLRPGGREIEQLESE---------------------------------GPPLGIFE-----DIDYQEQ 117 (193)
T ss_dssp EEEEEESSSEEEEEETTCTEEEEETCS---------------------------------SBBCSSSC-----TTCEEEE
T ss_pred EEEeCCCCCCEEEEeccccceeecccC---------------------------------ccceeeec-----cccccce
Confidence 999999999999999843 2222211 11255433 3456778
Q ss_pred EEEeCCCCeEEEEEcCCccCCCCHH-------HHHHhHcC--CCCHHHHHHHHHHHHHhC---CCCCCcEEEEEEeC
Q 022365 233 HVPIDPSIEFLILASDGLWKVMKNQ-------EAVDLVKP--IKDPQAAAKRLTTEALAR---KSKDDISCIVIRFG 297 (298)
Q Consensus 233 ~~~l~~~~d~lvL~SDGl~d~l~~~-------ei~~~~~~--~~~~~~~a~~L~~~a~~~---~~~DNiTvivv~~~ 297 (298)
++++++| |.|+|+||||+|....+ .+.+++.+ ..+++++++.|.+.+... ...||+|+++++++
T Consensus 118 ~~~l~~g-d~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 118 EIQLEPG-DRLLLYTDGLFEALNEDGEFFGEERLLELLDENRGLSPQEIIDALLEAIDRFGKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp EEE--TT-EEEEEECHHHCTTTCHHCHHCCCHHHHHHHHCHTTS-HHHHHHHHHHHHHHHTTSSTSS-EEEEEEEE-
T ss_pred EEEeccc-cEEEEeCCChhhccCCccchhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEC
Confidence 8999998 99999999999998533 34566663 367999999999999873 46799999999975
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.85 E-value=9.9e-07 Score=80.78 Aligned_cols=187 Identities=14% Similarity=0.101 Sum_probs=121.8
Q ss_pred CCCceEEEEeeccCCceeEEEEEEcCCCCchHHHHHHHHHHHHHHhhcCC-CcCHHHHHHHHHHHHHHHHHHhcccCCCC
Q 022365 62 DMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNF-WKDPKAAITNAYRSTDQFILENSMQLGPG 140 (298)
Q Consensus 62 ~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~-~~~~~~~l~~a~~~~~~~l~~~~~~~~~~ 140 (298)
..-|+|-+... ++....++|+|..|-+-.|..........+...... .-++. ..++.+|+.+.......
T Consensus 161 vGGD~yd~~~~---~~~~~~i~I~DvsG~Gv~aal~m~~~~~~~~~~~~~~~~~p~----~~l~~~n~~~~~~~~~~--- 230 (367)
T COG2208 161 VGGDYYDFIQL---GEKRLRIGIGDVSGKGVPAALLMLMPKLALRLLLESGPLDPA----DVLETLNRVLKQNLEED--- 230 (367)
T ss_pred cCCceEEEEEE---CCcEEEEEEEeccCCCHHHHHHHHHHHHHHHHhhhcccCCHH----HHHHHHHHHHHhcccCC---
Confidence 46777754332 235688899999995544444433322222222111 23343 34555666666554432
Q ss_pred CCceEEEEEEe--CCeEEEEEcCCceEEEEecCce---eecCCCCCChhHHHHHHHcCCeeecCCCCcCccCCceeeecc
Q 022365 141 GSTAVTAIVID--GKDLWVANVGDSRAVVCERGSA---NQITVDHEPHAERRRIEKQGGFVTSLPGDVPRVNGQLAVARA 215 (298)
Q Consensus 141 ~~tt~~~~~i~--~~~~~~a~vGDsr~~l~r~~~~---~~lt~dh~~~~e~~ri~~~gg~~~~~~~~~~~~~~~~~ltr~ 215 (298)
+-+|+...+++ .+.+.++++|---.++++.+.. ..+. .....
T Consensus 231 ~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l~---------------------------------~~g~p 277 (367)
T COG2208 231 MFVTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDLT---------------------------------ALGLP 277 (367)
T ss_pred cEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEcc---------------------------------CCCce
Confidence 55666666654 5889999999999999986532 2221 33345
Q ss_pred cCCccccCcccccceEEEEEeCCCCeEEEEEcCCccC-------CCCHHHHHHhHcC--CCCHHHHHHHHHHHHHhC---
Q 022365 216 FGDQSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWK-------VMKNQEAVDLVKP--IKDPQAAAKRLTTEALAR--- 283 (298)
Q Consensus 216 lG~~~~~~~~~~~p~~~~~~l~~~~d~lvL~SDGl~d-------~l~~~ei~~~~~~--~~~~~~~a~~L~~~a~~~--- 283 (298)
+|..+ ...+.+....+++| |.++|.|||+.+ .+..+...+++.. ..+++++++.+.+...+.
T Consensus 278 iG~~~-----~~~~~~~~~~l~~g-d~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~l~~~~~~ 351 (367)
T COG2208 278 IGLLP-----DYQYEVASLQLEPG-DLLVLYTDGVTEARNSDGEFFGLERLLKILGRLLGQPAEEILEAILESLEELQGD 351 (367)
T ss_pred eeecC-----CccchheeEEecCC-CEEEEEcCCeeeeecCCccEecHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCC
Confidence 66654 45677888999997 999999999998 5566777777763 357888888888877653
Q ss_pred -CCCCCcEEEEEEeC
Q 022365 284 -KSKDDISCIVIRFG 297 (298)
Q Consensus 284 -~~~DNiTvivv~~~ 297 (298)
...||+|++++++.
T Consensus 352 ~~~~DDiTll~lk~~ 366 (367)
T COG2208 352 QIQDDDITLLVLKVK 366 (367)
T ss_pred ccccCceEEEEEEec
Confidence 34588999999985
No 20
>PRK10693 response regulator of RpoS; Provisional
Probab=87.57 E-value=9.5 Score=33.86 Aligned_cols=104 Identities=12% Similarity=0.054 Sum_probs=56.5
Q ss_pred CCceEEEEeeccCCceeEEEEEEc--CCCCch-HHHHHHHHHHHHHHhhcC-CCcCHHHHHHHHHHHHHHHHHHhcccCC
Q 022365 63 MEDYLVAEYRKKKNHVLGLFAIFD--GHLGDR-VPTYLKDNLFNNILEESN-FWKDPKAAITNAYRSTDQFILENSMQLG 138 (298)
Q Consensus 63 neD~~~~~~~~~~~~~~~l~~V~D--G~GG~~-~a~~~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~~l~~~~~~~~ 138 (298)
.-|.+-+.. -+++...|.++| |||++. .|......++..++.... ..........+.+..+|+.+.......
T Consensus 150 ~GD~~d~~~---l~~~~~~~~~~DvsGhg~hg~~aa~l~~~~~~~~~~~~~~~~~~~~~~p~~~l~~lN~~l~~~~~~~- 225 (303)
T PRK10693 150 PGLVLDIAA---LSDNDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPG- 225 (303)
T ss_pred CccEEeeee---cCCCcEEEEEEecCCCCcccHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHhcCCCc-
Confidence 566664332 124455666777 777764 444555555554544321 000000114556667788777653221
Q ss_pred CCCCceEEEEEEe--CCeEEEEEcCCceEEEEecCce
Q 022365 139 PGGSTAVTAIVID--GKDLWVANVGDSRAVVCERGSA 173 (298)
Q Consensus 139 ~~~~tt~~~~~i~--~~~~~~a~vGDsr~~l~r~~~~ 173 (298)
. -|++..+++ .+++.+++.|....++..++++
T Consensus 226 --~-~t~~~~~~d~~~~~l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 226 --Q-FPLLVGYYHRELKNLILVSAGLNATLNTGEHQV 259 (303)
T ss_pred --e-eeEEEEEEEcCCCeEEEEeCCCCCEEecCCeEE
Confidence 2 344444454 4689999999999885444433
No 21
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=57.85 E-value=19 Score=29.41 Aligned_cols=45 Identities=24% Similarity=0.392 Sum_probs=33.7
Q ss_pred CeEEEEEcCCcc-----------CCCCHHHHHHhHcC----CCCHHHHHHHHHHHHHhCC
Q 022365 240 IEFLILASDGLW-----------KVMKNQEAVDLVKP----IKDPQAAAKRLTTEALARK 284 (298)
Q Consensus 240 ~d~lvL~SDGl~-----------d~l~~~ei~~~~~~----~~~~~~~a~~L~~~a~~~~ 284 (298)
||.+|..|.||| |+|..+...+.+.+ ..-|.+.|+.|++.-.+||
T Consensus 71 DDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RG 130 (237)
T COG3700 71 DDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred CCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcC
Confidence 478889999998 45555666665544 2458999999999988776
No 22
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=57.45 E-value=6.5 Score=28.37 Aligned_cols=50 Identities=20% Similarity=0.380 Sum_probs=32.5
Q ss_pred eCCCCeEEEEEcCCccCCCCHHHHHHhHcCCCCHHHHHHHHHHHHHhCCCCCCc
Q 022365 236 IDPSIEFLILASDGLWKVMKNQEAVDLVKPIKDPQAAAKRLTTEALARKSKDDI 289 (298)
Q Consensus 236 l~~~~d~lvL~SDGl~d~l~~~ei~~~~~~~~~~~~~a~~L~~~a~~~~~~DNi 289 (298)
+.++ |-++|+.|||+-.+...+..+-+... | ..+=.|.+-...||-.+.+
T Consensus 22 l~~~-D~vlL~qdGV~aAl~~~~~~~sl~~~--p-~~~~alkeDl~ARGl~~~~ 71 (96)
T COG2168 22 LTEG-DAVLLLQDGVYAALKGNRYLASLRES--P-IKVYALKEDLLARGLTGQI 71 (96)
T ss_pred hccc-CeEEEEcccchhhhcCcHHHHHHhcC--c-cceeeehhhHHhccchhhc
Confidence 4566 78889999999999988877777652 2 2223344444556554433
No 23
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=47.43 E-value=12 Score=25.47 Aligned_cols=17 Identities=29% Similarity=0.645 Sum_probs=13.6
Q ss_pred CCCeEEEEEcCCccCCCC
Q 022365 238 PSIEFLILASDGLWKVMK 255 (298)
Q Consensus 238 ~~~d~lvL~SDGl~d~l~ 255 (298)
+| +.+++++||+|=-+.
T Consensus 26 ~G-~Rllva~nGv~lEv~ 42 (72)
T PF09436_consen 26 PG-HRLLVASNGVFLEVR 42 (72)
T ss_pred CC-cEEEEecCcEEEEEe
Confidence 55 899999999995443
No 24
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=27.31 E-value=4e+02 Score=22.80 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=27.1
Q ss_pred ceEEEEEEeC-CeEEEEEcCCceEEE--EecCceeecCCCCCCh
Q 022365 143 TAVTAIVIDG-KDLWVANVGDSRAVV--CERGSANQITVDHEPH 183 (298)
Q Consensus 143 tt~~~~~i~~-~~~~~a~vGDsr~~l--~r~~~~~~lt~dh~~~ 183 (298)
+++.++.++. +++...---||.+.+ +|.|+..|.-..|+..
T Consensus 232 savaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsad 275 (350)
T KOG0641|consen 232 SAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSAD 275 (350)
T ss_pred ceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccc
Confidence 5555555554 677766666776555 5788888877777643
No 25
>PF04077 DsrH: DsrH like protein; InterPro: IPR007215 The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulphur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulphide moiety, delivered by the cysteine desulphurase IscS to TusA, then to TusBCD. The activated sulphur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulphur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulphur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulphur flux, such as oxidation from sulphide to molecular sulphur to sulphate [].; GO: 0002143 tRNA wobble position uridine thiolation, 0005737 cytoplasm; PDB: 2HYB_O 2HY5_C 1X9A_A 1RHX_A 2D1P_C.
Probab=23.02 E-value=20 Score=25.45 Aligned_cols=27 Identities=19% Similarity=0.476 Sum_probs=17.9
Q ss_pred CCCCeEEEEEcCCccCCCCHHHHHHhHc
Q 022365 237 DPSIEFLILASDGLWKVMKNQEAVDLVK 264 (298)
Q Consensus 237 ~~~~d~lvL~SDGl~d~l~~~ei~~~~~ 264 (298)
.++ |-|||.-||||-.+........+.
T Consensus 17 ~~~-D~ilLiqDgV~~a~~~~~~~~~l~ 43 (88)
T PF04077_consen 17 SEG-DAILLIQDGVYAALKGSPYFKLLQ 43 (88)
T ss_dssp -TT--EEEE-GGGGGGGBTTSTTHHHHH
T ss_pred CCC-CEEEeeHHHHHHHhcCCHHHHHHh
Confidence 445 889999999999887665555443
No 26
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=20.66 E-value=1.5e+02 Score=15.65 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=15.7
Q ss_pred EeCCeEEEEEcCCceEEEE
Q 022365 150 IDGKDLWVANVGDSRAVVC 168 (298)
Q Consensus 150 i~~~~~~~a~vGDsr~~l~ 168 (298)
..++.+|++-.|..|+..+
T Consensus 10 ~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 10 DSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp ETTSEEEEEECCCTEEEEE
T ss_pred eCCCCEEEEECCCCEEEEC
Confidence 3789999999999988654
Done!