BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022367
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DKR|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKR|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1IBS|A Chain A, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
pdb|1IBS|B Chain B, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
Length = 317
Score = 290 bits (743), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 140/289 (48%), Positives = 196/289 (67%), Gaps = 3/289 (1%)
Query: 1 MGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASA 60
+G+ LGK + RF+DGE+ + ++ES+RGC +++Q + P NE+IMELL+M+DA +RASA
Sbjct: 29 VGVQLGKCSVTRFSDGEVQINIEESIRGCDCYIIQSTSDPVNEHIMELLIMVDALKRASA 88
Query: 61 KNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPV 120
K I VIPY+GYAR DRK + RE I AKL ANL+ AGA RV+A DLH+ Q G+FDIP+
Sbjct: 89 KTINIVIPYYGYARQDRKARSREPITAKLFANLLETAGATRVIALDLHAPQIQGFFDIPI 148
Query: 121 DHVYGQPVILDYLASKAIXXXXXXXXXXXXXXXARARAFAKKLSDAPLAIVDKRRQGHNV 180
DH+ G P++ +Y K + RAR A +L AP+AI+DKRR NV
Sbjct: 149 DHLMGVPILGEYFEGKNL--EDIVIVSPDHGGVTRARKLADRLK-APIAIIDKRRPRPNV 205
Query: 181 AEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERL 240
AEVMN++G+++GK A+++DD+IDTAGTI+ A L + GA+EVYAC TH V S PA+ER+
Sbjct: 206 AEVMNIVGNIEGKTAILIDDIIDTAGTITLAANALVENGAKEVYACCTHPVLSGPAVERI 265
Query: 241 SSGLFQEVIITNTIPVSERNYFPQLTILSVANLLGETIWRVHDDCSDGY 289
++ +E+++TN+I + E + LSV LL E I RVH+ S Y
Sbjct: 266 NNSTIKELVVTNSIKLPEEKKIERFKQLSVGPLLAEAIIRVHEQQSVSY 314
>pdb|3DAH|A Chain A, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|B Chain B, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|C Chain C, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
Length = 319
Score = 264 bits (675), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 134/284 (47%), Positives = 195/284 (68%), Gaps = 5/284 (1%)
Query: 1 MGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASA 60
+G+ LGK + RF+DGEI V++QE+VRG VF++Q +C P N+N+MEL++M+DA +RASA
Sbjct: 27 LGIPLGKAMVSRFSDGEIQVEIQENVRGKDVFVLQSTCAPTNDNLMELMIMVDALKRASA 86
Query: 61 KNITAVIPYFGYARADRKTQ-GRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIP 119
ITA IPYFGYAR DR+ + R +I+AK+VAN++ AG R++ DLH+ Q G+FDIP
Sbjct: 87 GRITAAIPYFGYARQDRRPRSARVAISAKVVANMLEIAGVERIITMDLHADQIQGFFDIP 146
Query: 120 VDHVYGQPVILDYLASKAIXXXXXXXXXXXXXXXARARAFAKKLSDAPLAIVDKRRQGHN 179
VD++Y P++L L + RARA AK+L + LAI+DKRR N
Sbjct: 147 VDNIYATPILLGDLRKQ--NYPDLLVVSPDVGGVVRARALAKQL-NCDLAIIDKRRPKAN 203
Query: 180 VAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIER 239
VAEVMN+IG+V+G+ V++DDM+DTAGT+ K A +L + GA++V+A +TH V S A +R
Sbjct: 204 VAEVMNIIGEVEGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVLSGGAADR 263
Query: 240 LSSGLFQEVIITNTIPVS-ERNYFPQLTILSVANLLGETIWRVH 282
+++ E+++T+TIP+S E P++ LS A LL ET R+
Sbjct: 264 IAASALDELVVTDTIPLSAESLACPKIRALSSAGLLAETFSRIR 307
>pdb|2H07|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant S132a
pdb|2H07|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant S132a
Length = 326
Score = 237 bits (605), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 120/290 (41%), Positives = 182/290 (62%), Gaps = 2/290 (0%)
Query: 1 MGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASA 60
+GL+LGK+ K+F++ E V++ ESVRG V++VQ C N+N+MELL+MI+AC+ ASA
Sbjct: 23 LGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNLMELLIMINACKIASA 82
Query: 61 KNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPV 120
+TAVIP F YAR D+K + R I+AKLVAN+++ AGA+ ++ DLH+ Q G+FDIPV
Sbjct: 83 SRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHAAQIQGFFDIPV 142
Query: 121 DHVYGQPVILDYLASKAIXXXXXXXXXXXXXXXARARAFAKKLSDAPLAIVDKRRQGHNV 180
D++Y +P +L ++ R + A +L + A++ K R+ N
Sbjct: 143 DNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRL-NVDFALIHKERKKANE 201
Query: 181 AEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERL 240
+ M L+GDVK +VA++VDDM DT GTI A L GA VYA TH +FS PAI R+
Sbjct: 202 VDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRI 261
Query: 241 SSGLFQEVIITNTIPVSER-NYFPQLTILSVANLLGETIWRVHDDCSDGY 289
++ F+ V++TNTIP ++ + ++ ++ ++ +L E I R H+ S Y
Sbjct: 262 NNACFEAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRRTHNGESVSY 311
>pdb|2H06|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|2H06|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|2HCR|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 In Complex With Amp(Atp), Cadmium And
Sulfate Ion
pdb|2HCR|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 In Complex With Amp(Atp), Cadmium And
Sulfate Ion
pdb|3EFH|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|3EFH|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|3S5J|B Chain B, 2.0a Crystal Structure Of Human Phosphoribosyl
Pyrophosphate Synthetase 1
pdb|3S5J|A Chain A, 2.0a Crystal Structure Of Human Phosphoribosyl
Pyrophosphate Synthetase 1
Length = 326
Score = 237 bits (605), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 120/290 (41%), Positives = 182/290 (62%), Gaps = 2/290 (0%)
Query: 1 MGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASA 60
+GL+LGK+ K+F++ E V++ ESVRG V++VQ C N+N+MELL+MI+AC+ ASA
Sbjct: 23 LGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNLMELLIMINACKIASA 82
Query: 61 KNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPV 120
+TAVIP F YAR D+K + R I+AKLVAN+++ AGA+ ++ DLH+ Q G+FDIPV
Sbjct: 83 SRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPV 142
Query: 121 DHVYGQPVILDYLASKAIXXXXXXXXXXXXXXXARARAFAKKLSDAPLAIVDKRRQGHNV 180
D++Y +P +L ++ R + A +L + A++ K R+ N
Sbjct: 143 DNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRL-NVDFALIHKERKKANE 201
Query: 181 AEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERL 240
+ M L+GDVK +VA++VDDM DT GTI A L GA VYA TH +FS PAI R+
Sbjct: 202 VDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRI 261
Query: 241 SSGLFQEVIITNTIPVSER-NYFPQLTILSVANLLGETIWRVHDDCSDGY 289
++ F+ V++TNTIP ++ + ++ ++ ++ +L E I R H+ S Y
Sbjct: 262 NNACFEAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRRTHNGESVSY 311
>pdb|2H08|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant Y146m
pdb|2H08|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant Y146m
Length = 326
Score = 234 bits (597), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 119/290 (41%), Positives = 181/290 (62%), Gaps = 2/290 (0%)
Query: 1 MGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASA 60
+GL+LGK+ K+F++ E V++ ESVRG V++VQ C N+N+MELL+MI+AC+ ASA
Sbjct: 23 LGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNLMELLIMINACKIASA 82
Query: 61 KNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPV 120
+TAVIP F YAR D+K + R I+AKLVAN+++ AGA+ ++ DLH+ Q G+FDIPV
Sbjct: 83 SRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPV 142
Query: 121 DHVYGQPVILDYLASKAIXXXXXXXXXXXXXXXARARAFAKKLSDAPLAIVDKRRQGHNV 180
D++ +P +L ++ R + A +L + A++ K R+ N
Sbjct: 143 DNLMAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRL-NVDFALIHKERKKANE 201
Query: 181 AEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERL 240
+ M L+GDVK +VA++VDDM DT GTI A L GA VYA TH +FS PAI R+
Sbjct: 202 VDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRI 261
Query: 241 SSGLFQEVIITNTIPVSER-NYFPQLTILSVANLLGETIWRVHDDCSDGY 289
++ F+ V++TNTIP ++ + ++ ++ ++ +L E I R H+ S Y
Sbjct: 262 NNACFEAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRRTHNGESVSY 311
>pdb|2JI4|A Chain A, Human Phosphoribosylpyrophosphate Synthetase - Associated
Protein 41 (Pap41)
Length = 379
Score = 157 bits (396), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 102/329 (31%), Positives = 175/329 (53%), Gaps = 33/329 (10%)
Query: 1 MGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASA 60
+G+++GK+++ + + E VQ+QESVRG VF++Q N IMELL+M+ AC+ + A
Sbjct: 52 LGVEMGKVQVYQEPNRETRVQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCA 111
Query: 61 KNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPV 120
K+I VIPYF Y++ K + R SI +KL+A+++ +AG ++ DLH + G+F+IPV
Sbjct: 112 KSIIGVIPYFPYSK-QCKMRKRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPV 170
Query: 121 DHVYGQPVILDYLASKAIXXXXXXXXXXXXXXXARARAFAKKL-----------SDAPLA 169
D++ P +L Y+ + RA++FA++L DA
Sbjct: 171 DNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESD 230
Query: 170 IVDKRRQGHNVAEV-------------------MNLIGDVKGKVAVMVDDMIDTAGTISK 210
+VD R V V + ++GDV G++A++VDD+ID +
Sbjct: 231 LVDGRHSPPMVRSVAAIHPSLEIPMLIPKEKPPITVVGDVGGRIAIIVDDIIDDVDSFLA 290
Query: 211 GAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVS-ERNYFPQLTILS 269
A L + GA +++ +TH + S A R+ EV++TNTIP ++ P++ +
Sbjct: 291 AAETLKERGAYKIFVMATHGLLSSDAPRRIEESAIDEVVVTNTIPHEVQKLQCPKIKTVD 350
Query: 270 VANLLGETIWRVHDDCSDGYEPYSSLGID 298
++ +L E I R+H+ S Y + ++G+D
Sbjct: 351 ISMILSEAIRRIHNGESMSYL-FRNIGLD 378
>pdb|2C4K|A Chain A, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|B Chain B, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|C Chain C, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|D Chain D, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|E Chain E, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|F Chain F, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
Length = 370
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 161/319 (50%), Gaps = 31/319 (9%)
Query: 1 MGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASA 60
+G +LGK + + +GE V+++ESVRG +F++Q N +MELL+M A + A A
Sbjct: 49 LGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPRDVNTAVMELLIMAYALKTACA 108
Query: 61 KNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPV 120
+NI VIPYF Y++ K + R SI KL+A+++ +AG ++ DLH + G+F PV
Sbjct: 109 RNIIGVIPYFPYSKQS-KMRKRGSIVCKLLASMLAKAGLTHIITMDLHQKEIQGFFSFPV 167
Query: 121 DHVYGQPVILDYLASKAIXXXXXXXXXXXXXXXARARAFAKKL--------SDAPLAIVD 172
D++ P +L Y+ + RA+++A++L +A +D
Sbjct: 168 DNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSYAERLRLGLAVIHGEAQCTELD 227
Query: 173 KRRQGHNVAEVMN---------------------LIGDVKGKVAVMVDDMIDTAGTISKG 211
H+ V N ++GDV G++A++VDD+ID +
Sbjct: 228 MDDGRHSPPMVKNATVHPGLELPLMMAKEKPPITVVGDVGGRIAIIVDDIIDDVESFVAA 287
Query: 212 AALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVS-ERNYFPQLTILSV 270
A +L + GA ++Y +TH + S A + EV++TNT+P ++ P++ + +
Sbjct: 288 AEILKERGAYKIYVMATHGILSAEAPRLIEESSVDEVVVTNTVPHEVQKLQCPKIKTVDI 347
Query: 271 ANLLGETIWRVHDDCSDGY 289
+ +L E I R+H+ S Y
Sbjct: 348 SLILSEAIRRIHNGESMAY 366
>pdb|3MBI|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|C Chain C, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|D Chain D, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
Length = 287
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 114/223 (51%), Gaps = 10/223 (4%)
Query: 11 KRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYF 70
+RF DGE+Y++ E + G ++F++ + A +ME+++ + A + K++ + PY+
Sbjct: 32 RRFPDGELYLRYDEDLTGHNIFIIGNTHSDAE--VMEMILTLSAIQDYRTKSVNIIAPYY 89
Query: 71 GYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVIL 130
GYAR ++ + E I+++++ I + +N + D+H +++ Y + ++ I+
Sbjct: 90 GYARQHQRYKNGEPISSQILTE-IYSSYSNSIATVDIHDEKTLSYSKVKFSDLHANDAIV 148
Query: 131 DYLASKAIXXXXXXXXXXXXXXXARARAFAKKLSDAPLAIVDKRRQGHNVA-EVMNLIGD 189
Y + + AR + KL I KR V +V N+ D
Sbjct: 149 RYYKNVDVDYVVSPDDGGL----ARVADISAKLGKKHFFIEKKRIDDRTVEMKVPNV--D 202
Query: 190 VKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVF 232
V GK ++VDD+I T GTI+K + LL ++GA ++Y + H +F
Sbjct: 203 VNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLF 245
>pdb|3LPN|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LPN|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LRT|A Chain A, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3LRT|B Chain B, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3NAG|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
pdb|3NAG|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
Length = 286
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 114/223 (51%), Gaps = 10/223 (4%)
Query: 11 KRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYF 70
+RF DGE+Y++ E + G ++F++ + A +ME+++ + A + K++ + PY+
Sbjct: 30 RRFPDGELYLRYDEDLTGHNIFIIGNTHSDAE--VMEMILTLSAIQDYRTKSVNIIAPYY 87
Query: 71 GYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVIL 130
GYAR ++ + E I+++++ I + +N + D+H +++ Y + ++ I+
Sbjct: 88 GYARQHQRYKNGEPISSQILTE-IYSSYSNSIATVDIHDEKTLSYSKVKFSDLHANDAIV 146
Query: 131 DYLASKAIXXXXXXXXXXXXXXXARARAFAKKLSDAPLAIVDKRRQGHNVA-EVMNLIGD 189
Y + + AR + KL I KR V +V N+ D
Sbjct: 147 RYYKNVDVDYVVSPDDGGL----ARVADISAKLGKKHFFIEKKRIDDRTVEMKVPNV--D 200
Query: 190 VKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVF 232
V GK ++VDD+I T GTI+K + LL ++GA ++Y + H +F
Sbjct: 201 VNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLF 243
>pdb|1U9Y|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Z|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
Length = 284
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 133/279 (47%), Gaps = 23/279 (8%)
Query: 1 MGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASA 60
+ L +++ KRF D EIYV++ + + ++ + N+ I+E +++ DA R
Sbjct: 20 LNTKLTRVEYKRFPDNEIYVRIVDEINDDEAVIIN-TQKNQNDAIVETILLCDALRDEGV 78
Query: 61 KNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPV 120
K IT V PY YAR D+K E+I+ + +A + + ++++ + H +F IP
Sbjct: 79 KKITLVAPYLAYARQDKKFNPGEAISIRALAKIYSNI-VDKLITINPHETHIKDFFTIP- 136
Query: 121 DHVYGQ--PVILDYLASKAIXXXXXXXXXXXXXXXARARAFAK---KLSDAPLAIVDKRR 175
+YG P + +Y+ K A FAK K+ +A ++K R
Sbjct: 137 -FIYGDAVPKLAEYVKDK-------LNDPIVLAPDKGALEFAKTASKILNAEYDYLEKTR 188
Query: 176 QGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPP 235
++ D K + +VDD+I T GT++ LL ++GA+++ A H V
Sbjct: 189 LSPTEIQIAPKTLDAKDRDVFIVDDIISTGGTMATAVKLLKEQGAKKIIAACVHPVLIGD 248
Query: 236 AIERLSSGLFQEVIITNTIPVSERNYFPQLTILSVANLL 274
A+ +L S +EV+ T+T Y +++ +SVA ++
Sbjct: 249 ALNKLYSAGVEEVVGTDT-------YLSEVSKVSVAEVI 280
>pdb|1AO0|A Chain A, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|B Chain B, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|C Chain C, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|D Chain D, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
Length = 459
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 188 GDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQE 247
G V+GK VMVDD I T + +L + GA EV+ + + P + + +E
Sbjct: 334 GVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVKISSPPIAHPCFYGIDTSTHEE 393
Query: 248 VIITNTIPVSERNYF--PQLTILSVANLLGETIWRVHDDCSDG 288
+I ++ R L+ LSV LL + I R +DD + G
Sbjct: 394 LIASSHSVEEIRQEIGADTLSFLSVEGLL-KGIGRKYDDSNCG 435
>pdb|1GPH|1 Chain 1, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|2 Chain 2, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|3 Chain 3, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|4 Chain 4, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
Length = 465
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 188 GDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQE 247
G V+GK VMVDD I T + +L + GA EV+ + + P + + +E
Sbjct: 334 GVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVKISSPPIAHPCFYGIDTSTHEE 393
Query: 248 VIIT--NTIPVSERNYFPQLTILSVANLLGETIWRVHDDCSDG 288
+I + + + + L+ LSV LL + I R +DD + G
Sbjct: 394 LIASSHSVDEIRQEIGADTLSFLSVEGLL-KGIGRKYDDSNCG 435
>pdb|1VDM|A Chain A, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|B Chain B, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|C Chain C, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|D Chain D, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|E Chain E, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|F Chain F, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|G Chain G, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|H Chain H, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|I Chain I, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|J Chain J, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|K Chain K, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|L Chain L, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
Length = 153
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 163 LSDAPLAIVDKR------RQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLH 216
L D PL ++D + +G + + GD+K K V+VDD+ DT T+ +
Sbjct: 48 LGDIPLKVIDVKFYKGIDERGEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVK 107
Query: 217 QEGAREV-YAC 226
+ GA+E+ AC
Sbjct: 108 KLGAKEIKIAC 118
>pdb|2E55|A Chain A, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|B Chain B, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|C Chain C, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|D Chain D, Structure Of Aq2163 Protein From Aquifex Aeolicus
Length = 208
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 189 DVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEV 248
++KGK+ V++D M+ T GT+ AL + S HA+ +P ++R+ F+EV
Sbjct: 118 ELKGKIVVILDPMLATGGTLE--VALREILKHSPLKVKSVHAIAAPEGLKRIEEK-FKEV 174
Query: 249 II 250
I
Sbjct: 175 EI 176
>pdb|3OHP|A Chain A, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|B Chain B, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|C Chain C, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|D Chain D, Crystal Structure Of Hgprt From Vibrio Cholerae
Length = 177
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 185 NLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 227
+L D+KGK ++V+D+IDT T++K +L + + C+
Sbjct: 84 DLDDDIKGKDVLLVEDIIDTGNTLNKVKEILALREPKSIRICT 126
>pdb|1UPU|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPF|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
Length = 224
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 185 NLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERL 240
L D++ + +++D M TAG++ K +L + G +E + + +P IER+
Sbjct: 130 KLPADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILAAPQGIERV 185
>pdb|1BD3|D Chain D, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|C Chain C, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|B Chain B, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|A Chain A, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD4|D Chain D, Uprt-Uracil Complex
pdb|1BD4|C Chain C, Uprt-Uracil Complex
pdb|1BD4|B Chain B, Uprt-Uracil Complex
pdb|1BD4|A Chain A, Uprt-Uracil Complex
pdb|1JLS|B Chain B, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|A Chain A, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|D Chain D, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|C Chain C, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLR|A Chain A, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|B Chain B, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|D Chain D, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|C Chain C, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
Length = 243
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 185 NLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERL 240
L D++ + +++D M TAG++ K +L + G +E + + +P IER+
Sbjct: 149 KLPADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILAAPQGIERV 204
>pdb|1FLG|A Chain A, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
pdb|1FLG|B Chain B, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
Length = 582
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 32/62 (51%)
Query: 56 RRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGY 115
++ +A N+ + P + Y+ D K +G+ES A + A +R+ A D +G+ +
Sbjct: 34 KQVNADNVFKLTPAWSYSFGDEKQRGQESQAIVSDGVIYVTASYSRLFALDAKTGKRLWT 93
Query: 116 FD 117
++
Sbjct: 94 YN 95
>pdb|1J7J|A Chain A, Crystal Structure Of The Hprt From Salmonella Typhimurium
pdb|1J7J|B Chain B, Crystal Structure Of The Hprt From Salmonella Typhimurium
Length = 178
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 178 HNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPA 236
+V + +L D++GK ++V+D+ID+ T+SK +L G RE + + + P+
Sbjct: 78 RDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREIL---GLREPKSLAICTLLDKPS 133
>pdb|1G9S|A Chain A, Crystal Structure Of A Complex Between E.Coli Hprt And Imp
pdb|1G9S|B Chain B, Crystal Structure Of A Complex Between E.Coli Hprt And Imp
pdb|1G9T|A Chain A, Crystal Structure Of E.Coli Hprt-Gmp Complex
pdb|1G9T|B Chain B, Crystal Structure Of E.Coli Hprt-Gmp Complex
pdb|1GRV|A Chain A, Hypoxanthine Phosphoribosyltransferase From E. Coli
pdb|1GRV|B Chain B, Hypoxanthine Phosphoribosyltransferase From E. Coli
Length = 182
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 185 NLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 227
+L D++GK ++V+D+ID+ T+SK +L + + C+
Sbjct: 89 DLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICT 131
>pdb|2GGV|B Chain B, Crystal Structure Of The West Nile Virus Ns2b-Ns3
Protease, His51ala Mutant
Length = 185
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 185 NLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 227
L+G + VMV+ + T +KGAAL+ EG + Y S
Sbjct: 28 GLLGSYQAGAGVMVEGVFHTLWATTKGAALMSGEGRLDPYWGS 70
>pdb|2IJO|B Chain B, Crystal Structure Of The West Nile Virus Ns2b-Ns3 Protease
Complexed With Bovine Pancreatic Trypsin Inhibitor
Length = 192
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 185 NLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 227
L+G + VMV+ + T +KGAAL+ EG + Y S
Sbjct: 29 GLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSGEGRLDPYWGS 71
>pdb|2FP7|B Chain B, West Nile Virus Ns2bNS3PROTEASE IN COMPLEX WITH
BZ-Nle-Lys-Arg-Arg-H
Length = 172
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 185 NLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 227
L+G + VMV+ + T +KGAAL+ EG + Y S
Sbjct: 14 GLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSGEGRLDPYWGS 56
>pdb|1WD5|A Chain A, Crystal Structure Of Tt1426 From Thermus Thermophilus Hb8
Length = 208
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 191 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSS 242
KG+ V+VDD + T + +++ QEG V SP A+ERL +
Sbjct: 119 KGRDVVLVDDGVATGASXEAALSVVFQEGP--RRVVVAVPVASPEAVERLKA 168
>pdb|3E90|B Chain B, West Nile Vi Rus Ns2b-Ns3protease In Complexed With
Inhibitor Naph-Kkr-H
pdb|3E90|D Chain D, West Nile Vi Rus Ns2b-Ns3protease In Complexed With
Inhibitor Naph-Kkr-H
Length = 198
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 185 NLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 227
L+G + VMV+ + T +KGAAL+ EG + Y S
Sbjct: 33 GLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSGEGRLDPYWGS 75
>pdb|3DEZ|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
pdb|3DEZ|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
Length = 243
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 167 PLAIVDKRRQGHNVAEVMNLIGDV-KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYA 225
PLA + + + H + G V KG+ V+++D+I T G++ A +EGA +
Sbjct: 125 PLAYIRSKPKDHGAGNQIE--GRVTKGQKMVIIEDLISTGGSVLDAVAAAQREGADVLGV 182
Query: 226 CSTHAVFSPPAIERLSSGLFQEVIITN 252
+ P A + V ++N
Sbjct: 183 VAIFTYELPKATANFEKASVKLVTLSN 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,669,448
Number of Sequences: 62578
Number of extensions: 269106
Number of successful extensions: 653
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 29
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)