Query 022367
Match_columns 298
No_of_seqs 263 out of 2475
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 02:59:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0462 PrsA Phosphoribosylpyr 100.0 1.7E-90 3.6E-95 630.0 33.0 290 1-297 24-314 (314)
2 PRK04923 ribose-phosphate pyro 100.0 1.8E-81 3.9E-86 582.5 33.0 292 1-298 26-319 (319)
3 PRK02269 ribose-phosphate pyro 100.0 7E-81 1.5E-85 579.9 32.9 291 1-297 25-317 (320)
4 PRK00553 ribose-phosphate pyro 100.0 5.5E-80 1.2E-84 575.4 33.2 290 1-297 29-322 (332)
5 PRK03092 ribose-phosphate pyro 100.0 7E-80 1.5E-84 569.5 32.7 291 1-297 9-301 (304)
6 PTZ00145 phosphoribosylpyropho 100.0 2E-79 4.3E-84 582.5 32.4 290 1-297 139-436 (439)
7 PRK02458 ribose-phosphate pyro 100.0 1E-78 2.2E-83 565.4 32.0 289 1-297 29-317 (323)
8 PRK02812 ribose-phosphate pyro 100.0 8.4E-78 1.8E-82 559.9 33.5 290 1-297 41-330 (330)
9 PLN02369 ribose-phosphate pyro 100.0 3.8E-77 8.3E-82 550.8 33.8 292 1-297 11-302 (302)
10 PRK01259 ribose-phosphate pyro 100.0 5.3E-76 1.1E-80 545.1 33.5 289 1-297 20-309 (309)
11 KOG1448 Ribose-phosphate pyrop 100.0 4.7E-77 1E-81 530.6 20.2 291 1-297 23-314 (316)
12 PRK07199 phosphoribosylpyropho 100.0 6.9E-75 1.5E-79 535.6 33.3 272 1-285 22-297 (301)
13 PRK06827 phosphoribosylpyropho 100.0 7.7E-75 1.7E-79 547.1 32.3 286 3-297 52-368 (382)
14 TIGR01251 ribP_PPkin ribose-ph 100.0 2.5E-72 5.3E-77 521.4 34.3 286 1-296 20-307 (308)
15 PRK00934 ribose-phosphate pyro 100.0 4E-71 8.8E-76 507.9 32.6 266 1-279 19-284 (285)
16 PLN02297 ribose-phosphate pyro 100.0 4.8E-71 1E-75 511.5 31.9 271 2-279 38-325 (326)
17 KOG1503 Phosphoribosylpyrophos 100.0 2.1E-64 4.5E-69 436.8 23.4 289 1-291 28-347 (354)
18 PF14572 Pribosyl_synth: Phosp 100.0 3.5E-40 7.5E-45 280.3 12.6 152 140-297 2-184 (184)
19 PF13793 Pribosyltran_N: N-ter 100.0 7.7E-36 1.7E-40 238.7 11.2 97 1-98 20-116 (116)
20 PRK13811 orotate phosphoribosy 99.9 1.3E-20 2.9E-25 160.8 15.5 153 88-245 3-156 (170)
21 PRK13812 orotate phosphoribosy 99.7 1.1E-16 2.4E-21 137.3 14.9 152 87-245 3-159 (176)
22 PRK13809 orotate phosphoribosy 99.7 3E-16 6.4E-21 137.7 15.4 153 89-244 12-169 (206)
23 PRK08525 amidophosphoribosyltr 99.7 1.8E-16 4E-21 154.0 14.2 147 128-276 263-426 (445)
24 PLN02293 adenine phosphoribosy 99.7 8.9E-16 1.9E-20 132.8 15.9 109 141-250 62-183 (187)
25 PRK13810 orotate phosphoribosy 99.6 8.7E-15 1.9E-19 126.6 15.5 155 86-245 15-174 (187)
26 TIGR01203 HGPRTase hypoxanthin 99.6 1.2E-14 2.6E-19 123.7 12.4 106 125-235 11-124 (166)
27 PRK02304 adenine phosphoribosy 99.6 3.5E-14 7.5E-19 121.8 15.1 100 141-241 51-163 (175)
28 PRK00455 pyrE orotate phosphor 99.6 5.6E-14 1.2E-18 123.2 15.7 151 86-245 4-165 (202)
29 TIGR01367 pyrE_Therm orotate p 99.6 7.3E-14 1.6E-18 121.0 15.8 132 90-228 2-141 (187)
30 PRK00129 upp uracil phosphorib 99.6 3E-14 6.6E-19 125.5 13.4 115 141-257 70-187 (209)
31 COG0461 PyrE Orotate phosphori 99.6 7.9E-14 1.7E-18 121.0 15.6 152 88-245 4-164 (201)
32 PRK09162 hypoxanthine-guanine 99.6 2.9E-14 6.2E-19 123.0 12.7 101 125-227 25-132 (181)
33 PRK15423 hypoxanthine phosphor 99.6 3.9E-14 8.5E-19 121.7 12.8 108 125-236 17-133 (178)
34 TIGR00336 pyrE orotate phospho 99.6 5E-14 1.1E-18 120.6 13.0 100 140-242 53-158 (173)
35 PRK07322 adenine phosphoribosy 99.6 4.4E-14 9.5E-19 121.5 12.6 116 111-227 19-155 (178)
36 PRK05793 amidophosphoribosyltr 99.6 2.3E-14 5.1E-19 140.1 12.2 146 128-275 276-438 (469)
37 PF00156 Pribosyltran: Phospho 99.6 6.7E-14 1.5E-18 112.5 12.6 102 125-229 13-125 (125)
38 PRK02277 orotate phosphoribosy 99.6 4.9E-14 1.1E-18 123.4 12.4 106 140-249 84-194 (200)
39 PRK12560 adenine phosphoribosy 99.5 1.2E-13 2.7E-18 119.6 14.1 151 101-256 11-181 (187)
40 COG0634 Hpt Hypoxanthine-guani 99.5 1.3E-13 2.8E-18 116.0 12.6 124 125-256 20-151 (178)
41 PLN02238 hypoxanthine phosphor 99.5 1.1E-13 2.3E-18 120.1 11.5 110 125-239 20-141 (189)
42 PRK05500 bifunctional orotidin 99.5 2.6E-13 5.7E-18 132.2 15.3 150 89-243 289-443 (477)
43 TIGR01090 apt adenine phosphor 99.5 4.8E-13 1E-17 114.1 13.9 101 141-242 46-159 (169)
44 TIGR01091 upp uracil phosphori 99.5 5.2E-13 1.1E-17 117.5 12.8 114 141-256 68-184 (207)
45 COG1926 Predicted phosphoribos 99.5 3.1E-13 6.7E-18 116.5 10.9 147 123-274 8-205 (220)
46 PRK09219 xanthine phosphoribos 99.5 1.6E-12 3.4E-17 112.8 15.3 127 129-256 38-183 (189)
47 PRK05205 bifunctional pyrimidi 99.5 7.4E-13 1.6E-17 113.7 12.7 104 125-228 15-132 (176)
48 TIGR01744 XPRTase xanthine pho 99.5 1.6E-12 3.5E-17 112.9 14.2 128 127-255 36-182 (191)
49 PTZ00271 hypoxanthine-guanine 99.4 2.8E-12 6E-17 112.8 12.4 110 125-237 36-160 (211)
50 PRK11595 DNA utilization prote 99.4 1.8E-13 3.8E-18 122.2 4.3 156 52-227 51-222 (227)
51 PTZ00149 hypoxanthine phosphor 99.4 4.8E-12 1E-16 113.2 12.2 107 125-235 66-190 (241)
52 TIGR01743 purR_Bsub pur operon 99.4 6.8E-11 1.5E-15 107.4 19.0 192 48-256 42-255 (268)
53 PRK06031 phosphoribosyltransfe 99.3 4.8E-11 1E-15 106.7 15.1 129 128-257 71-221 (233)
54 PRK08558 adenine phosphoribosy 99.3 4E-11 8.7E-16 107.6 14.7 111 129-241 99-224 (238)
55 COG0856 Orotate phosphoribosyl 99.3 5.5E-12 1.2E-16 105.5 8.4 99 139-241 84-187 (203)
56 COG0503 Apt Adenine/guanine ph 99.3 5.2E-11 1.1E-15 102.5 13.9 101 141-242 53-166 (179)
57 TIGR00201 comF comF family pro 99.3 8.3E-11 1.8E-15 102.1 13.4 139 64-227 36-187 (190)
58 PRK09213 pur operon repressor; 99.3 8.3E-11 1.8E-15 107.0 13.8 113 141-257 130-258 (271)
59 PRK07272 amidophosphoribosyltr 99.3 2.1E-11 4.5E-16 119.5 10.5 148 127-276 272-436 (484)
60 COG1040 ComFC Predicted amidop 99.2 3.3E-11 7.2E-16 107.3 9.7 144 61-227 66-219 (225)
61 PRK09123 amidophosphoribosyltr 99.2 2.6E-10 5.6E-15 111.9 13.7 139 127-275 282-445 (479)
62 PLN02440 amidophosphoribosyltr 99.2 3.9E-10 8.4E-15 110.9 12.9 100 127-229 262-377 (479)
63 PRK08341 amidophosphoribosyltr 99.1 1.5E-10 3.3E-15 112.4 8.7 146 128-275 259-419 (442)
64 PRK09246 amidophosphoribosyltr 99.1 3.1E-10 6.7E-15 112.2 9.7 148 127-275 279-443 (501)
65 PRK09177 xanthine-guanine phos 99.1 1.1E-09 2.4E-14 92.2 11.3 88 125-217 18-109 (156)
66 KOG1712 Adenine phosphoribosyl 99.1 1.4E-09 3E-14 90.0 10.7 119 126-246 45-176 (183)
67 PRK07349 amidophosphoribosyltr 99.1 5.9E-10 1.3E-14 109.7 9.7 148 127-276 299-463 (500)
68 COG2236 Predicted phosphoribos 99.1 8.7E-10 1.9E-14 95.3 9.5 100 125-226 15-121 (192)
69 TIGR01134 purF amidophosphorib 99.0 5.1E-10 1.1E-14 109.1 8.1 147 127-275 260-423 (442)
70 PRK06781 amidophosphoribosyltr 99.0 7.2E-10 1.6E-14 108.5 8.6 147 127-275 270-433 (471)
71 PRK07631 amidophosphoribosyltr 99.0 1.3E-09 2.8E-14 106.8 9.0 147 127-275 270-433 (475)
72 COG2065 PyrR Pyrimidine operon 99.0 4.3E-09 9.4E-14 87.5 9.9 110 126-238 16-140 (179)
73 COG0035 Upp Uracil phosphoribo 98.9 1.1E-08 2.4E-13 89.0 10.9 116 140-257 69-188 (210)
74 KOG3367 Hypoxanthine-guanine p 98.9 7E-09 1.5E-13 86.7 8.6 125 125-256 45-183 (216)
75 PF14681 UPRTase: Uracil phosp 98.9 1.8E-08 4E-13 88.7 11.2 114 141-256 67-185 (207)
76 PRK06388 amidophosphoribosyltr 98.9 7.5E-09 1.6E-13 101.4 9.4 147 127-275 278-441 (474)
77 PLN02541 uracil phosphoribosyl 98.8 3.1E-08 6.7E-13 89.0 11.7 113 142-256 103-221 (244)
78 PRK07847 amidophosphoribosyltr 98.7 6.9E-08 1.5E-12 95.4 10.8 148 127-276 289-453 (510)
79 COG0034 PurF Glutamine phospho 98.5 1.8E-07 4E-12 89.4 5.8 146 127-274 270-432 (470)
80 TIGR01251 ribP_PPkin ribose-ph 97.9 0.00011 2.5E-09 68.5 12.0 116 1-137 181-298 (308)
81 KOG0572 Glutamine phosphoribos 97.9 1.7E-05 3.6E-10 74.4 6.0 134 141-275 291-441 (474)
82 PRK02269 ribose-phosphate pyro 97.5 0.005 1.1E-07 57.8 15.4 136 141-281 4-160 (320)
83 PRK02812 ribose-phosphate pyro 97.5 0.0074 1.6E-07 56.9 16.5 136 141-281 20-176 (330)
84 PRK07199 phosphoribosylpyropho 97.3 0.011 2.3E-07 55.1 15.0 130 148-281 7-158 (301)
85 PRK02458 ribose-phosphate pyro 97.3 0.018 4E-07 54.1 16.4 134 144-281 10-164 (323)
86 PTZ00145 phosphoribosylpyropho 97.2 0.01 2.2E-07 57.8 14.2 135 141-280 118-275 (439)
87 PRK00553 ribose-phosphate pyro 97.2 0.026 5.7E-07 53.3 16.7 136 140-280 7-163 (332)
88 PRK03092 ribose-phosphate pyro 97.2 0.01 2.2E-07 55.3 13.7 123 155-281 1-144 (304)
89 PRK01259 ribose-phosphate pyro 97.1 0.022 4.8E-07 53.2 15.5 129 149-281 6-155 (309)
90 PF15609 PRTase_2: Phosphoribo 97.1 0.0038 8.2E-08 53.9 9.4 103 123-228 37-157 (191)
91 COG0462 PrsA Phosphoribosylpyr 97.1 0.026 5.6E-07 52.5 15.0 129 150-282 11-160 (314)
92 PRK04923 ribose-phosphate pyro 97.1 0.036 7.7E-07 52.1 16.2 138 141-281 5-162 (319)
93 PF13793 Pribosyltran_N: N-ter 96.8 0.037 8.1E-07 44.2 12.1 85 146-234 3-91 (116)
94 PLN02369 ribose-phosphate pyro 96.8 0.035 7.5E-07 51.7 13.7 124 154-281 2-146 (302)
95 PRK00934 ribose-phosphate pyro 96.7 0.11 2.3E-06 48.1 16.3 127 149-280 5-151 (285)
96 PLN02297 ribose-phosphate pyro 96.7 0.12 2.5E-06 48.7 16.1 136 144-281 17-179 (326)
97 PRK06827 phosphoribosylpyropho 96.5 0.11 2.3E-06 50.0 15.3 135 142-281 8-198 (382)
98 KOG1017 Predicted uracil phosp 94.8 0.12 2.7E-06 44.8 7.3 72 185-258 182-256 (267)
99 PF14572 Pribosyl_synth: Phosp 91.8 0.77 1.7E-05 39.6 7.3 100 19-136 74-173 (184)
100 PF15610 PRTase_3: PRTase ComF 85.9 0.99 2.1E-05 41.2 4.0 38 189-226 135-172 (274)
101 TIGR02990 ectoine_eutA ectoine 84.0 6.9 0.00015 35.2 8.6 96 50-169 110-210 (239)
102 COG2179 Predicted hydrolase of 79.7 33 0.00071 29.3 10.4 113 91-213 20-152 (175)
103 PF06300 Tsp45I: Tsp45I type I 79.7 3.5 7.5E-05 36.7 4.8 160 42-234 53-229 (261)
104 PF01488 Shikimate_DH: Shikima 67.6 14 0.00031 29.8 5.4 36 188-227 8-43 (135)
105 PLN02501 digalactosyldiacylgly 65.3 63 0.0014 34.0 10.5 130 28-164 322-460 (794)
106 KOG1448 Ribose-phosphate pyrop 65.2 40 0.00087 31.4 8.2 99 154-256 14-132 (316)
107 TIGR01091 upp uracil phosphori 59.8 25 0.00055 30.7 5.9 47 18-68 112-158 (207)
108 COG0634 Hpt Hypoxanthine-guani 58.5 41 0.00088 28.9 6.6 60 4-67 62-128 (178)
109 COG3473 Maleate cis-trans isom 58.1 94 0.002 27.6 8.9 99 50-169 108-208 (238)
110 PF01012 ETF: Electron transfe 58.0 1.1E+02 0.0023 25.3 9.2 107 39-168 11-117 (164)
111 PRK09162 hypoxanthine-guanine 57.6 41 0.00089 28.7 6.7 59 7-69 70-134 (181)
112 PRK15423 hypoxanthine phosphor 57.6 80 0.0017 27.0 8.5 61 5-69 62-129 (178)
113 PRK07272 amidophosphoribosyltr 55.5 42 0.00091 33.5 7.2 77 23-106 345-429 (484)
114 PRK00129 upp uracil phosphorib 53.7 37 0.00081 29.6 6.0 46 19-68 115-160 (209)
115 PF02875 Mur_ligase_C: Mur lig 53.0 83 0.0018 23.1 7.0 63 194-256 13-83 (91)
116 KOG1503 Phosphoribosylpyrophos 51.6 1.9E+02 0.0041 26.3 12.2 125 153-279 18-160 (354)
117 TIGR00640 acid_CoA_mut_C methy 51.4 33 0.00072 27.8 4.9 50 204-254 66-115 (132)
118 PRK09123 amidophosphoribosyltr 51.1 57 0.0012 32.5 7.4 73 25-104 357-437 (479)
119 smart00450 RHOD Rhodanese Homo 50.9 31 0.00068 24.8 4.4 33 191-226 55-87 (100)
120 COG2185 Sbm Methylmalonyl-CoA 50.6 36 0.00078 28.2 4.9 46 207-253 79-124 (143)
121 TIGR01203 HGPRTase hypoxanthin 50.0 73 0.0016 26.7 7.0 44 22-69 78-121 (166)
122 cd00158 RHOD Rhodanese Homolog 49.6 35 0.00075 24.2 4.4 34 190-226 48-81 (89)
123 cd01529 4RHOD_Repeats Member o 49.4 33 0.00072 25.4 4.4 33 191-226 55-87 (96)
124 cd01444 GlpE_ST GlpE sulfurtra 47.1 32 0.00069 25.2 3.9 32 191-225 55-86 (96)
125 PTZ00271 hypoxanthine-guanine 45.8 86 0.0019 27.6 6.9 60 4-67 87-153 (211)
126 PLN02238 hypoxanthine phosphor 44.3 1E+02 0.0022 26.5 7.1 60 6-69 67-134 (189)
127 PLN02440 amidophosphoribosyltr 44.2 93 0.002 31.0 7.7 76 24-106 336-419 (479)
128 PRK13671 hypothetical protein; 43.2 1.3E+02 0.0029 27.9 8.1 67 33-107 5-71 (298)
129 PF02142 MGS: MGS-like domain 42.3 33 0.00071 25.8 3.3 49 201-253 16-69 (95)
130 cd01523 RHOD_Lact_B Member of 42.2 43 0.00093 24.9 4.0 28 191-221 60-87 (100)
131 PF06574 FAD_syn: FAD syntheta 41.8 68 0.0015 26.7 5.5 75 84-171 61-143 (157)
132 PF01972 SDH_sah: Serine dehyd 41.6 2.9E+02 0.0063 25.6 10.0 74 89-164 39-115 (285)
133 KOG4203 Armadillo/beta-Catenin 40.7 52 0.0011 32.7 5.3 77 144-221 336-415 (473)
134 PF10662 PduV-EutP: Ethanolami 40.4 46 0.001 27.5 4.1 40 200-242 100-139 (143)
135 PF00156 Pribosyltran: Phospho 40.3 1E+02 0.0022 23.7 6.0 45 20-68 80-124 (125)
136 PRK05205 bifunctional pyrimidi 40.3 1.2E+02 0.0026 25.5 6.9 61 5-69 63-133 (176)
137 KOG0814 Glyoxylase [General fu 39.3 31 0.00068 29.8 3.0 44 185-231 24-67 (237)
138 COG0784 CheY FOG: CheY-like re 39.2 1.6E+02 0.0035 22.2 7.1 56 191-255 4-62 (130)
139 TIGR01809 Shik-DH-AROM shikima 37.5 66 0.0014 29.4 5.2 35 189-227 122-156 (282)
140 cd01518 RHOD_YceA Member of th 37.0 68 0.0015 23.9 4.4 33 191-226 60-92 (101)
141 PLN02527 aspartate carbamoyltr 36.6 3.5E+02 0.0077 25.1 12.4 38 188-227 147-185 (306)
142 cd01528 RHOD_2 Member of the R 35.5 73 0.0016 23.7 4.4 33 191-226 57-89 (101)
143 cd01532 4RHOD_Repeat_1 Member 35.1 59 0.0013 23.9 3.7 32 191-225 49-82 (92)
144 PRK12342 hypothetical protein; 34.5 3.5E+02 0.0077 24.5 10.1 134 8-169 5-140 (254)
145 COG0540 PyrB Aspartate carbamo 34.5 2E+02 0.0042 27.1 7.6 41 186-228 152-192 (316)
146 cd01519 RHOD_HSP67B2 Member of 33.9 72 0.0016 23.8 4.1 33 191-226 65-97 (106)
147 PRK00676 hemA glutamyl-tRNA re 33.8 87 0.0019 29.8 5.3 36 188-227 170-205 (338)
148 PTZ00149 hypoxanthine phosphor 33.3 1.7E+02 0.0038 26.3 7.0 60 6-69 122-187 (241)
149 cd01527 RHOD_YgaP Member of th 33.0 70 0.0015 23.6 3.9 33 191-226 53-85 (99)
150 cd01524 RHOD_Pyr_redox Member 33.0 83 0.0018 22.9 4.2 31 192-226 51-81 (90)
151 smart00851 MGS MGS-like domain 32.3 60 0.0013 24.0 3.3 46 201-253 16-64 (90)
152 cd02071 MM_CoA_mut_B12_BD meth 32.2 1.1E+02 0.0023 24.1 4.9 50 205-255 64-113 (122)
153 PF04127 DFP: DNA / pantothena 30.9 68 0.0015 27.6 3.8 25 202-226 26-50 (185)
154 COG1922 WecG Teichoic acid bio 30.5 1.6E+02 0.0035 26.8 6.3 65 191-258 107-175 (253)
155 PRK08373 aspartate kinase; Val 30.1 4.1E+02 0.009 25.2 9.3 75 28-102 32-129 (341)
156 cd03466 Nitrogenase_NifN_2 Nit 29.9 4.8E+02 0.01 25.3 10.1 34 190-227 298-331 (429)
157 PRK13811 orotate phosphoribosy 29.9 2.1E+02 0.0045 24.1 6.6 64 2-71 79-142 (170)
158 PRK08525 amidophosphoribosyltr 29.9 1.1E+02 0.0025 30.0 5.7 44 24-71 336-379 (445)
159 TIGR01134 purF amidophosphorib 29.9 1.7E+02 0.0038 28.7 7.0 41 24-68 334-374 (442)
160 PRK00856 pyrB aspartate carbam 29.8 4.6E+02 0.01 24.4 12.0 39 187-227 151-189 (305)
161 COG0034 PurF Glutamine phospho 29.4 53 0.0011 32.4 3.2 36 24-66 344-382 (470)
162 PRK12769 putative oxidoreducta 29.2 1.8E+02 0.0038 30.0 7.2 56 189-248 465-524 (654)
163 KOG1643 Triosephosphate isomer 29.2 1.3E+02 0.0029 26.6 5.2 64 47-112 22-98 (247)
164 cd01080 NAD_bind_m-THF_DH_Cycl 29.2 3.3E+02 0.0071 22.9 7.7 59 188-256 40-99 (168)
165 PF04914 DltD_C: DltD C-termin 29.1 2.4E+02 0.0052 22.8 6.5 72 43-123 33-111 (130)
166 PRK11070 ssDNA exonuclease Rec 28.9 2.1E+02 0.0046 29.2 7.5 16 268-283 190-205 (575)
167 PRK02304 adenine phosphoribosy 28.7 2.6E+02 0.0056 23.4 7.0 44 16-63 100-145 (175)
168 PLN02160 thiosulfate sulfurtra 28.4 94 0.002 25.0 4.1 33 191-226 80-112 (136)
169 PRK05320 rhodanese superfamily 28.1 1E+02 0.0023 27.9 4.8 33 190-225 173-205 (257)
170 cd01533 4RHOD_Repeat_2 Member 28.1 1.1E+02 0.0024 23.1 4.3 33 191-226 65-98 (109)
171 COG1184 GCD2 Translation initi 28.0 63 0.0014 30.2 3.3 50 204-254 128-180 (301)
172 PLN02962 hydroxyacylglutathion 28.0 84 0.0018 28.3 4.1 48 191-241 34-82 (251)
173 PRK05562 precorrin-2 dehydroge 27.9 1.5E+02 0.0033 26.3 5.6 43 185-235 18-61 (223)
174 cd04725 OMP_decarboxylase_like 27.8 41 0.00089 29.5 2.0 90 145-241 2-95 (216)
175 PF11382 DUF3186: Protein of u 27.8 1.9E+02 0.0042 26.9 6.6 56 186-241 77-133 (308)
176 PRK00035 hemH ferrochelatase; 27.5 5E+02 0.011 24.1 18.5 69 204-284 246-325 (333)
177 PRK00455 pyrE orotate phosphor 27.3 2.5E+02 0.0054 24.1 6.9 38 25-66 110-147 (202)
178 PRK14093 UDP-N-acetylmuramoyla 27.1 4.9E+02 0.011 25.6 9.7 55 48-110 353-412 (479)
179 COG1751 Uncharacterized conser 26.9 1.7E+02 0.0037 24.7 5.3 78 203-284 36-123 (186)
180 COG1926 Predicted phosphoribos 26.9 1.5E+02 0.0031 26.4 5.1 65 24-109 120-184 (220)
181 TIGR02981 phageshock_pspE phag 26.9 1.4E+02 0.0031 22.7 4.7 31 192-225 58-88 (101)
182 cd00532 MGS-like MGS-like doma 26.7 1.5E+02 0.0033 22.9 4.9 48 202-253 29-77 (112)
183 PRK11930 putative bifunctional 26.7 7.1E+02 0.015 26.4 11.3 190 46-254 343-540 (822)
184 TIGR01367 pyrE_Therm orotate p 26.6 2.9E+02 0.0063 23.6 7.1 47 16-66 92-139 (187)
185 cd04820 PA_M28_1_1 PA_M28_1_1: 26.1 1.4E+02 0.0031 24.4 4.8 39 189-227 47-93 (137)
186 cd04814 PA_M28_1 PA_M28_1: Pro 26.0 1.4E+02 0.0031 24.6 4.8 40 189-228 45-98 (142)
187 PF07931 CPT: Chloramphenicol 26.0 63 0.0014 27.5 2.8 24 192-216 83-107 (174)
188 COG1134 TagH ABC-type polysacc 25.6 93 0.002 28.2 3.8 46 192-240 165-213 (249)
189 COG0287 TyrA Prephenate dehydr 25.3 66 0.0014 29.6 2.9 50 204-256 97-147 (279)
190 TIGR01143 murF UDP-N-acetylmur 25.1 4.2E+02 0.0091 25.4 8.7 52 49-111 313-368 (417)
191 COG2185 Sbm Methylmalonyl-CoA 25.1 4E+02 0.0086 22.1 8.8 78 61-164 11-88 (143)
192 cd01447 Polysulfide_ST Polysul 25.1 79 0.0017 23.3 2.9 32 191-225 60-91 (103)
193 cd01525 RHOD_Kc Member of the 25.0 1.3E+02 0.0029 22.2 4.3 32 192-226 65-96 (105)
194 cd01526 RHOD_ThiF Member of th 24.7 1E+02 0.0022 23.9 3.6 33 191-226 71-104 (122)
195 PF14681 UPRTase: Uracil phosp 24.2 3.1E+02 0.0067 23.8 6.9 46 17-66 110-157 (207)
196 PF02633 Creatininase: Creatin 24.0 2.6E+02 0.0056 24.6 6.5 66 42-110 37-111 (237)
197 cd01480 vWA_collagen_alpha_1-V 24.0 1.8E+02 0.0038 24.4 5.2 56 192-249 110-168 (186)
198 TIGR01090 apt adenine phosphor 24.0 2.7E+02 0.006 23.1 6.3 38 25-66 106-143 (169)
199 cd01449 TST_Repeat_2 Thiosulfa 23.8 1.5E+02 0.0032 22.6 4.3 33 191-226 77-109 (118)
200 cd01714 ETF_beta The electron 23.8 3.5E+02 0.0075 23.3 7.1 68 90-168 68-138 (202)
201 PRK14463 ribosomal RNA large s 23.8 4E+02 0.0086 25.3 8.0 57 41-101 261-317 (349)
202 cd01715 ETF_alpha The electron 23.8 2.6E+02 0.0055 23.1 6.1 67 91-168 44-110 (168)
203 PF05728 UPF0227: Uncharacteri 23.7 4.7E+02 0.01 22.4 8.5 75 82-171 12-87 (187)
204 cd01534 4RHOD_Repeat_3 Member 23.7 1.5E+02 0.0032 21.8 4.2 31 191-225 55-85 (95)
205 PRK00258 aroE shikimate 5-dehy 23.4 1.7E+02 0.0037 26.5 5.4 35 189-227 120-154 (278)
206 PRK10287 thiosulfate:cyanide s 23.3 1.9E+02 0.004 22.2 4.8 31 192-225 60-90 (104)
207 PRK02261 methylaspartate mutas 23.0 1.4E+02 0.003 24.3 4.1 51 204-254 67-122 (137)
208 PRK13940 glutamyl-tRNA reducta 22.7 1.4E+02 0.0031 29.0 4.9 36 188-227 177-212 (414)
209 PRK05793 amidophosphoribosyltr 22.6 1.7E+02 0.0036 29.1 5.4 44 24-71 349-392 (469)
210 PF01903 CbiX: CbiX; InterPro 22.5 61 0.0013 24.5 1.8 19 53-72 44-62 (105)
211 PF03195 DUF260: Protein of un 22.3 29 0.00062 27.0 -0.0 42 55-97 8-49 (101)
212 COG3947 Response regulator con 22.3 1.3E+02 0.0029 28.2 4.2 54 194-255 2-55 (361)
213 COG0117 RibD Pyrimidine deamin 22.0 1.5E+02 0.0032 24.7 4.0 37 210-246 86-124 (146)
214 PRK02277 orotate phosphoribosy 21.8 3.1E+02 0.0068 23.6 6.4 40 24-67 136-175 (200)
215 COG2086 FixA Electron transfer 21.7 3.8E+02 0.0082 24.5 7.1 128 8-169 5-142 (260)
216 COG1751 Uncharacterized conser 21.4 1.7E+02 0.0037 24.7 4.3 50 204-254 12-61 (186)
217 PF02006 DUF137: Protein of un 21.1 2.6E+02 0.0056 23.9 5.4 82 50-135 48-149 (178)
218 COG0169 AroE Shikimate 5-dehyd 21.0 1.9E+02 0.0042 26.6 5.1 35 189-227 123-157 (283)
219 PF14502 HTH_41: Helix-turn-he 21.0 1E+02 0.0023 20.6 2.4 20 204-223 19-38 (48)
220 cd01522 RHOD_1 Member of the R 20.9 1.6E+02 0.0035 22.7 4.1 33 191-226 63-95 (117)
221 PRK03803 murD UDP-N-acetylmura 20.8 3.3E+02 0.0071 26.4 7.0 134 10-161 299-434 (448)
222 PLN02469 hydroxyacylglutathion 20.5 1.6E+02 0.0034 26.6 4.4 50 188-242 18-68 (258)
223 cd03409 Chelatase_Class_II Cla 20.4 1.1E+02 0.0023 22.7 2.8 21 51-72 50-70 (101)
224 smart00166 UBX Domain present 20.4 2E+02 0.0044 20.7 4.2 30 40-69 22-51 (80)
225 smart00849 Lactamase_B Metallo 20.2 1.3E+02 0.0028 24.2 3.6 37 194-233 16-53 (183)
226 PRK13812 orotate phosphoribosy 20.0 3.7E+02 0.0081 22.7 6.4 37 24-64 102-139 (176)
No 1
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-90 Score=629.99 Aligned_cols=290 Identities=58% Similarity=0.933 Sum_probs=279.0
Q ss_pred CCCcccceeeeeeCCCceEEEeCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeeccCccccccccc
Q 022367 1 MGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (298)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~~ 80 (298)
||++++++++++|||||++|++.|+|||+||||+||+++|+||+|||||+|+||||++||+|||+|+||||||||||++.
T Consensus 24 l~~~l~~~~~~rF~DGE~~V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA~k~asA~~It~ViPY~gYARQDk~~~ 103 (314)
T COG0462 24 LGIPLGKVEVKRFPDGEIYVRIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDALKRASAKRITAVIPYFGYARQDKAFK 103 (314)
T ss_pred hCCCcccceeEEcCCCcEEEEecccccCCeEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCceEEEEeecchhhccCcccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CCCchHHHHHHHHHHHhCCCEEEEEcCCcccccCCCCcccccccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHH
Q 022367 81 GRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFA 160 (298)
Q Consensus 81 ~~~~~~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la 160 (298)
+|||+|||++|+||+.+|+|+|+|+|+|++|+++||++|++|+.+.|.+++|+++.+ ..++++||+||.||+.||+.+|
T Consensus 104 ~repIsaklvA~lL~~aG~drv~TvDlH~~qiqgfFdipvdnl~a~p~l~~~~~~~~-~~~d~vVVSPD~Ggv~RAr~~A 182 (314)
T COG0462 104 PREPISAKLVANLLETAGADRVLTVDLHAPQIQGFFDIPVDNLYAAPLLAEYIREKY-DLDDPVVVSPDKGGVKRARALA 182 (314)
T ss_pred CCCCEeHHHHHHHHHHcCCCeEEEEcCCchhhcccCCCccccccchHHHHHHHHHhc-CCCCcEEECCCccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999875 5667999999999999999999
Q ss_pred HHcCCCCEEEEEeeec-CCCeEEEEeeecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHH
Q 022367 161 KKLSDAPLAIVDKRRQ-GHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIER 239 (298)
Q Consensus 161 ~~L~~~~~~~~~k~r~-~~~~~~~~~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~ 239 (298)
+.|+ .++.+++|+|+ ..+..+.+.+.||++||+|+||||||+||+|+.+|++.|+++||++|+++||||+|++++.++
T Consensus 183 ~~L~-~~~a~i~K~R~~~~~~v~~~~~~gdV~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a~~tH~vfs~~a~~~ 261 (314)
T COG0462 183 DRLG-APLAIIDKRRDSSPNVVEVMNLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAAATHGVFSGAALER 261 (314)
T ss_pred HHhC-CCEEEEEEeecCCCCeEEEeecccccCCCEEEEEeccccccHHHHHHHHHHHHCCCCeEEEEEEchhhChHHHHH
Confidence 9998 89999999995 777788888999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCEEEEecCCCCcccCCCCCeeEEechHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 022367 240 LSSGLFQEVIITNTIPVSERNYFPQLTILSVANLLGETIWRVHDDCSDGYEPYSSLGI 297 (298)
Q Consensus 240 l~~~~i~~ii~tnti~~~~~~~~~ki~~isva~lla~~i~~~~~~~s~~~~~~~~~~~ 297 (298)
++++.+++|++|||+|.++...++|++++|+|++|||+|+|+|+++| +|.||.
T Consensus 262 l~~~~i~~vivTnTi~~~~~~~~~~~~~isva~liaeaI~ri~~~~s-----vs~lf~ 314 (314)
T COG0462 262 LEASAIDEVIVTDTIPLPEKKKIPKVSVISVAPLIAEAIRRIHNGES-----VSSLFD 314 (314)
T ss_pred HhcCCCCEEEEeCCcccccccccCceEEEEhHHHHHHHHHHHHcCCC-----hhHhhC
Confidence 99988999999999999844678899999999999999999999999 998884
No 2
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1.8e-81 Score=582.54 Aligned_cols=292 Identities=53% Similarity=0.843 Sum_probs=275.0
Q ss_pred CCCcccceeeeeeCCCceEEEeCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeeccCccccccccc
Q 022367 1 MGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (298)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~~ 80 (298)
||++++++++++|||||+++++.+++||++||+|||++.|+||++||||++++|||++||+||++|+|||||+||||++.
T Consensus 26 lg~~l~~~~~~~FpdGE~~v~i~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~alr~~~a~~i~~ViPYl~YaRQDr~~~ 105 (319)
T PRK04923 26 LGVRMGKALVTRFSDGEVQVEIEESVRRQEVFVIQPTCAPSAENLMELLVLIDALKRASAASVTAVIPYFGYSRQDRRMR 105 (319)
T ss_pred hCCceeeeEEEECCCCCEEEEECCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcCCcEEEEEeecccccccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -CCCchHHHHHHHHHHHhCCCEEEEEcCCcccccCCCCcccccccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHH
Q 022367 81 -GRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAF 159 (298)
Q Consensus 81 -~~~~~~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~l 159 (298)
++||++++.+|+||+++|+|+|+++|+|++++++||++|++|+.+.+.+++++.+.. +.+++++|+||.||.+||+.+
T Consensus 106 ~~~~~isak~va~ll~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~l~~~i~~~~-~~~~~vVVsPD~Ga~~rA~~l 184 (319)
T PRK04923 106 SSRVPITAKVAAKMISAMGADRVLTVDLHADQIQGFFDVPVDNVYASPLLLADIWRAY-GTDNLIVVSPDVGGVVRARAV 184 (319)
T ss_pred CCCCCccHHHHHHHHHhcCCCEEEEEeCChHHHHhhcCCCceeeeChHHHHHHHHHhc-CCCCCEEEEECCchHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999997643 457889999999999999999
Q ss_pred HHHcCCCCEEEEEeeecCCCeEEEEeeecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHH
Q 022367 160 AKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIER 239 (298)
Q Consensus 160 a~~L~~~~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~ 239 (298)
|+.|+..++.++.|+|...+..+.+...|+++||+|+|||||+|||+|+.++++.|+++||++|+++||||+|+++|.++
T Consensus 185 A~~L~~~~~~~~~K~R~~~~~~~~~~~~gdv~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~THgvfs~~a~~~ 264 (319)
T PRK04923 185 AKRLDDADLAIIDKRRPRANVATVMNIIGDVQGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAYITHPVLSGPAVDN 264 (319)
T ss_pred HHHcCCCCEEEeccccCCCCceEEEecccCCCCCEEEEEecccCchHHHHHHHHHHHHCCCCEEEEEEECcccCchHHHH
Confidence 99996369999999997655555566789999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCEEEEecCCCCccc-CCCCCeeEEechHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 022367 240 LSSGLFQEVIITNTIPVSER-NYFPQLTILSVANLLGETIWRVHDDCSDGYEPYSSLGID 298 (298)
Q Consensus 240 l~~~~i~~ii~tnti~~~~~-~~~~ki~~isva~lla~~i~~~~~~~s~~~~~~~~~~~~ 298 (298)
|.++++++|++|||+|++++ +.++|++++|+|++||++|+++|+++| +|++|+|
T Consensus 265 l~~s~i~~iv~Tdtip~~~~~~~~~k~~~isva~lla~~i~~~~~~~s-----~~~l~~~ 319 (319)
T PRK04923 265 INNSQLDELVVTDTIPLSEAARACAKIRQLSVAELLAETIRRIAFGES-----VSSLYVD 319 (319)
T ss_pred HhhCCCCEEEEeCCccCchhhcccCCeEEEEhHHHHHHHHHHHHcCCC-----HHHhcCC
Confidence 99999999999999998755 467899999999999999999999999 9999987
No 3
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=7e-81 Score=579.94 Aligned_cols=291 Identities=49% Similarity=0.863 Sum_probs=273.7
Q ss_pred CCCcccceeeeeeCCCceEEEeCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeeccCccccccccc
Q 022367 1 MGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (298)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~~ 80 (298)
||++++++++++|||||+++++.+++||+||||+||++.|+||++||||++++|||++||+||++|+|||||+||||++.
T Consensus 25 lg~~l~~~~~~~FpdGE~~v~i~~~vrg~dV~iv~s~~~~~nd~lmelll~~~alr~~~a~~i~~V~PYl~YaRQDr~~~ 104 (320)
T PRK02269 25 IGIELGKSSVRQFSDGEIQVNIEESIRGHHVFILQSTSSPVNDNLMEILIMVDALKRASAESINVVMPYYGYARQDRKAR 104 (320)
T ss_pred hCCceeeeEEEECCCCCEEEEECCCCCCCEEEEEecCCCCccchHHHHHHHHHHHHHhCCCeEEEEEeccccchhhcccC
Confidence 68999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhCCCEEEEEcCCcccccCCCCcccccccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHH
Q 022367 81 GRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFA 160 (298)
Q Consensus 81 ~~~~~~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la 160 (298)
+|||+++|.+|+||+++|+|+++++|+|+++.++||++|++++.+.+.+++++.++.++.+++++|+||.||++||+.+|
T Consensus 105 ~~e~isak~~a~ll~~~g~d~vit~D~H~~~~~~~f~~p~~~l~~~p~l~~~i~~~~~~~~~~vvVsPd~G~~~~A~~lA 184 (320)
T PRK02269 105 SREPITSKLVANMLEVAGVDRLLTVDLHAAQIQGFFDIPVDHLMGAPLIADYFDRRGLVGDDVVVVSPDHGGVTRARKLA 184 (320)
T ss_pred CCCCchHHHHHHHHhhcCCCEEEEECCChHHHhccccCCchhhhhHHHHHHHHHHhCCCCCCcEEEEECccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999876555678899999999999999999
Q ss_pred HHcCCCCEEEEEeeecCC--CeEEEEeeecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHH
Q 022367 161 KKLSDAPLAIVDKRRQGH--NVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIE 238 (298)
Q Consensus 161 ~~L~~~~~~~~~k~r~~~--~~~~~~~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~ 238 (298)
+.|+ .|+.+++|+|... +....+...|+++||+|+|||||+|||+|+.++++.|+++||++|+++||||+|+++|.+
T Consensus 185 ~~lg-~~~~~~~k~r~~~~~~~~~~~~~~gdv~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHglf~~~a~~ 263 (320)
T PRK02269 185 QFLK-TPIAIIDKRRSVDKMNTSEVMNIIGNVKGKKCILIDDMIDTAGTICHAADALAEAGATEVYASCTHPVLSGPALD 263 (320)
T ss_pred HHhC-CCEEEEEecccCCCCceeEEEEeccccCCCEEEEEeeecCcHHHHHHHHHHHHHCCCCEEEEEEECcccCchHHH
Confidence 9998 8999999988632 333445678899999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCEEEEecCCCCcccCCCCCeeEEechHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 022367 239 RLSSGLFQEVIITNTIPVSERNYFPQLTILSVANLLGETIWRVHDDCSDGYEPYSSLGI 297 (298)
Q Consensus 239 ~l~~~~i~~ii~tnti~~~~~~~~~ki~~isva~lla~~i~~~~~~~s~~~~~~~~~~~ 297 (298)
+|.++++++|++|||||+++...++|++++|+|++|||+|+++|+++| +|.+|.
T Consensus 264 ~l~~~~i~~iv~Tdti~~~~~~~~~k~~~isva~~la~~i~~~~~~~s-----~~~~~~ 317 (320)
T PRK02269 264 NIQKSAIEKLVVLDTIYLPEERLIDKIEQISIADLLGEAIIRIHEKRP-----LSPLFE 317 (320)
T ss_pred HHHhCCCCEEEEeCCCCCccccccCCeEEEEhHHHHHHHHHHHHcCCC-----HHHHhc
Confidence 999999999999999998765567899999999999999999999999 877774
No 4
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=5.5e-80 Score=575.39 Aligned_cols=290 Identities=46% Similarity=0.750 Sum_probs=273.0
Q ss_pred CCCcccceeeeeeCCCceEEEeCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeeccCccccccccc
Q 022367 1 MGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (298)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~~ 80 (298)
||++++++++++|||||+++++.++|||+||||+||++.|+||++||||++++|||++||++||+|+|||||+||||++.
T Consensus 29 lg~~l~~~~~~~FpdGE~~v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~alr~~~a~~i~~ViPYl~YaRQDr~~~ 108 (332)
T PRK00553 29 LSMKPGEIVIQKFADGETYIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDALKRGSAKSITAILPYYGYARQDRKTA 108 (332)
T ss_pred hCCceeeeEEEECCCCCEEEEECCCCCCCEEEEEcCCCCCCchHHHHHHHHHHHHHHcCCCeEEEEeeccccchhhcccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhCCCEEEEEcCCcccccCCCCcccccccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHH
Q 022367 81 GRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFA 160 (298)
Q Consensus 81 ~~~~~~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la 160 (298)
+|||++++.+|+||+++|+|+|+++|+|++++++||++|++|+.+.+.+++|+.+.. +.+++++|+||.||++||+.+|
T Consensus 109 ~~e~isak~vA~ll~~~g~d~vit~DlH~~~i~~~F~ipv~~l~a~~~~~~~~~~~~-~~~~~vvVsPD~gg~~rA~~lA 187 (332)
T PRK00553 109 GREPITSKLVADLLTKAGVTRVTLTDIHSDQTQGFFDIPVDILRTYHVFLSRVLELL-GKKDLVVVSPDYGGVKRARLIA 187 (332)
T ss_pred CCCCccHHHHHHHHHhcCCCEEEEEeCChHHHHhhcCCCcceeechHHHHHHHHHhc-CCCCeEEEEECCCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997642 4578899999999999999999
Q ss_pred HHcCCCCEEEEEeeecCCCeEEEEeeecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHh
Q 022367 161 KKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERL 240 (298)
Q Consensus 161 ~~L~~~~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l 240 (298)
+.++ .|+.+++|+|...+..+.+.+.|+++||+|+|||||++||+|+.++++.|+++||++|+++||||+|+++|.++|
T Consensus 188 ~~lg-~~~~vi~K~r~~~~~~~~~~~~gdv~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~atHglf~~~a~~~l 266 (332)
T PRK00553 188 ESLE-LPLAIIDKRRPKHNVAESINVLGEVKNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVMATHGLFNKNAIQLF 266 (332)
T ss_pred HHhC-CCEEEEEEecCCcceEeeEEeeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCcEEEEEEEeeecCchHHHHH
Confidence 9998 899999999976665555567789999999999999999999999999999999999999999999999999999
Q ss_pred hcC----CCCEEEEecCCCCcccCCCCCeeEEechHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 022367 241 SSG----LFQEVIITNTIPVSERNYFPQLTILSVANLLGETIWRVHDDCSDGYEPYSSLGI 297 (298)
Q Consensus 241 ~~~----~i~~ii~tnti~~~~~~~~~ki~~isva~lla~~i~~~~~~~s~~~~~~~~~~~ 297 (298)
.++ ++++|++|||+|+++...++|++++|+|++||++|+++|+++| +|++|.
T Consensus 267 ~~~~~~~~i~~iv~Tntip~~~~~~~~~~~~vsva~~la~~i~~~~~~~s-----~~~~~~ 322 (332)
T PRK00553 267 DEAFKKKLIDKLFVSNSIPQTKFEKKPQFKVVDLAHLYEEVLLCYANGGS-----ISAIYT 322 (332)
T ss_pred HhccccCCCCEEEEeCCccCcccccCCCeEEEEhHHHHHHHHHHHhcCCC-----HHHHHh
Confidence 754 8999999999998765557899999999999999999999999 887763
No 5
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=7e-80 Score=569.53 Aligned_cols=291 Identities=46% Similarity=0.759 Sum_probs=273.4
Q ss_pred CCCcccceeeeeeCCCceEEEeCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeeccCccccccccc
Q 022367 1 MGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (298)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~~ 80 (298)
||++++++++++|||||+++++.++|||+|||||||+++|+||++||||++++|||++||++|++|+||||||||||++.
T Consensus 9 l~~~l~~~~~~~F~DGE~~vri~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~a~~i~~ViPYl~YaRQDr~~~ 88 (304)
T PRK03092 9 LGVEVTPTTAYDFANGEIYVRFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRASAKRITVVLPFYPYARQDKKHR 88 (304)
T ss_pred hCCceeeeEEEECCCCCEEEEECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEEecccccccccccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhCCCEEEEEcCCcccccCCCCcccccccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHH
Q 022367 81 GRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFA 160 (298)
Q Consensus 81 ~~~~~~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la 160 (298)
+|||+++|.+|+||+++|+|+|+++|+|+++.++||++|++|+++.+.++++|.+.+ +.+++++|+||.||++||+.++
T Consensus 89 ~~e~isak~va~lL~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~la~~i~~~~-~~~~~vvVspd~Ga~~~a~~la 167 (304)
T PRK03092 89 GREPISARLVADLFKTAGADRIMTVDLHTAQIQGFFDGPVDHLFAMPLLADYVRDKY-DLDNVTVVSPDAGRVRVAEQWA 167 (304)
T ss_pred CCCCccHHHHHHHHHhcCCCeEEEEecChHHHHhhcCCCeeeEechHHHHHHHHHhc-CCCCcEEEEecCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997653 4578899999999999999999
Q ss_pred HHcCCCCEEEEEeeecCC--CeEEEEeeecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHH
Q 022367 161 KKLSDAPLAIVDKRRQGH--NVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIE 238 (298)
Q Consensus 161 ~~L~~~~~~~~~k~r~~~--~~~~~~~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~ 238 (298)
+.|+..++.+++|+|+.. +..+...+.++++||+|+|||||++||+|+.++++.|+++||++|+++||||+|++++.+
T Consensus 168 ~~L~~~~~~~i~k~R~~~~~~~~~~~~~~~dv~gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~tH~v~~~~a~~ 247 (304)
T PRK03092 168 DRLGGAPLAFIHKTRDPTVPNQVVANRVVGDVEGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHGVLSGPAAE 247 (304)
T ss_pred HHcCCCCEEEEEEEcccCCCCceEEEecCcCCCCCEEEEEccccCcHHHHHHHHHHHHhcCCCeEEEEEEcccCChHHHH
Confidence 999747999999999643 333444677899999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCEEEEecCCCCcccCCCCCeeEEechHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 022367 239 RLSSGLFQEVIITNTIPVSERNYFPQLTILSVANLLGETIWRVHDDCSDGYEPYSSLGI 297 (298)
Q Consensus 239 ~l~~~~i~~ii~tnti~~~~~~~~~ki~~isva~lla~~i~~~~~~~s~~~~~~~~~~~ 297 (298)
+|.++++++|++|||+|++++..++|++++|+|++||++|+++|+++| +|++|.
T Consensus 248 ~l~~~~~~~i~~t~tip~~~~~~~~~~~~~sva~~la~~i~~~~~~~s-----~~~l~~ 301 (304)
T PRK03092 248 RLKNCGAREVVVTDTLPIPEEKRFDKLTVLSIAPLLARAIREVFEDGS-----VTSLFD 301 (304)
T ss_pred HHHHCCCCEEEEeeeeccchhhcCCCeEEEEhHHHHHHHHHHHHcCCC-----HHHHhC
Confidence 999999999999999998765557899999999999999999999999 888874
No 6
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=2e-79 Score=582.55 Aligned_cols=290 Identities=47% Similarity=0.776 Sum_probs=274.1
Q ss_pred CCCcccceeeeeeCCCceEEEeCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeeccCccccccccc
Q 022367 1 MGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (298)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~~ 80 (298)
||++++++++++|||||++|++.++|||+|||||||+++|+||++||||++++|||++||++||+|+|||||+||||++.
T Consensus 139 Lg~~l~~~~~~rFpDGE~~Vri~e~VrG~dV~IVqS~~~pvNd~LmELLllidAlr~agAkrItlViPYl~YaRQDR~~~ 218 (439)
T PTZ00145 139 LGTILGRVHLKRFADGEVSMQFLESIRGKDVYIIQPTCPPVNENLIELLLMISTCRRASAKKITAVIPYYGYARQDRKLS 218 (439)
T ss_pred hCCCceeeEEEECCCCCEEEEECCCcCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHhccCeEEEEeecccchheecccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhCCCEEEEEcCCcccccCCCC--cccccccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHHH
Q 022367 81 GRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFD--IPVDHVYGQPVILDYLASKAISSDDLVVVSPDVGGVARARA 158 (298)
Q Consensus 81 ~~~~~~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~--i~~~~l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~ 158 (298)
+|||++++.+|+||+++|+|+|+++|+|++++++||+ +|++++.+.+.+++|+.+. +..++++|+||.||..||+.
T Consensus 219 ~gepIsak~vA~lL~~~G~d~VitvDlHs~~i~~fF~~~iPvdnl~a~~~~a~~i~~~--~l~~pVVVsPD~Ga~~RAr~ 296 (439)
T PTZ00145 219 SRVPISAADVARMIEAMGVDRVVAIDLHSGQIQGFFGPRVPVDNLEAQLIGLDYFTKK--DLYKPVIVSPDAGGVYRARK 296 (439)
T ss_pred CCCChhHHHHHHHHHHcCCCeEEEEecChHHHHhhcCCCcccccccccHHHHHHHhhc--CCCccEEEccCcchHHHHHH
Confidence 9999999999999999999999999999999999996 8999999999999999764 34678999999999999999
Q ss_pred HHHHcCC-----CCEEEEEeeecCCCeEEEEeeecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCC
Q 022367 159 FAKKLSD-----APLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFS 233 (298)
Q Consensus 159 la~~L~~-----~~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~ 233 (298)
+|+.|+. .++.++.|+|...+..+.+.+.|+++||+|+|||||||||+|+.++++.|+++||++|+++||||+|+
T Consensus 297 ~A~~L~~~~~~~~~~avl~K~R~~~~~v~~~~lvgdV~Gk~vIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~~~~THglfs 376 (439)
T PTZ00145 297 FQDGLNHRGISDCGIAMLIKQRTKPNEIEKMDLVGNVYDSDVIIVDDMIDTSGTLCEAAKQLKKHGARRVFAFATHGLFS 376 (439)
T ss_pred HHHHhccccccCCCEEEEEeecCCCCceEEEeccCCCCCCEEEEEcceeCcHHHHHHHHHHHHHcCCCEEEEEEEcccCC
Confidence 9999962 58999999998777666667789999999999999999999999999999999999999999999999
Q ss_pred ccHHHHhhcCCCCEEEEecCCCCccc-CCCCCeeEEechHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 022367 234 PPAIERLSSGLFQEVIITNTIPVSER-NYFPQLTILSVANLLGETIWRVHDDCSDGYEPYSSLGI 297 (298)
Q Consensus 234 ~~a~~~l~~~~i~~ii~tnti~~~~~-~~~~ki~~isva~lla~~i~~~~~~~s~~~~~~~~~~~ 297 (298)
++|.++|.++++++|++|||||++++ ..++|++++|||++||++|+++|+++| +|++|.
T Consensus 377 ~~A~~rl~~s~i~~IvvTdTIp~~~~~~~~~k~~visVA~llAeaI~~i~~~~s-----~s~lf~ 436 (439)
T PTZ00145 377 GPAIERIEASPLEEVVVTDTVKSNKNIDSCKKITKLSVSVLVADAIRRIHQKES-----LNDLFN 436 (439)
T ss_pred hhHHHHHhcCCCCEEEEeCCCcCchhhcccCCeEEEEhHHHHHHHHHHHhcCCC-----HHHHhC
Confidence 99999999999999999999998765 457899999999999999999999999 888874
No 7
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1e-78 Score=565.41 Aligned_cols=289 Identities=42% Similarity=0.735 Sum_probs=270.3
Q ss_pred CCCcccceeeeeeCCCceEEEeCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeeccCccccccccc
Q 022367 1 MGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (298)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~~ 80 (298)
||++++++++++|||||.++++.++++|++||+|||++.|+||++||||++++|||++||++|++|+|||||+||||++.
T Consensus 29 lg~~l~~~~~~~FpdGE~~v~i~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~alr~~~a~~i~lViPYl~YaRQDr~~~ 108 (323)
T PRK02458 29 AGVPLGKLSSRQFSDGEIMINIEESVRGDDIYIIQSTSFPVNDHLWELLIMIDACKRASANTVNVVLPYFGYARQDRIAK 108 (323)
T ss_pred hCCceeeeEEEECCCCCEEEEecCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcCCceEEEEEeccccchhhcccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhCCCEEEEEcCCcccccCCCCcccccccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHH
Q 022367 81 GRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFA 160 (298)
Q Consensus 81 ~~~~~~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la 160 (298)
+|||++++.+|+||+++|+|+|+++|+|++++++||++|++++.+.+++++|+.+..++.+++++|+||.||++||+.++
T Consensus 109 ~ge~isak~~a~lL~~~g~d~vitvD~H~~~i~~~F~~p~~nl~~~p~~~~~l~~~~~~~~~~vvV~pd~Ga~~~A~~la 188 (323)
T PRK02458 109 PREPITAKLVANMLVKAGVDRVLTLDLHAVQVQGFFDIPVDNLFTVPLFAKHYCKKGLSGSDVVVVSPKNSGIKRARSLA 188 (323)
T ss_pred CCCCchHHHHHHHHhhcCCCeEEEEecCcHHhhccccCCceEEEEHHHHHHHHHHhCCCCCceEEEEECCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999776445578999999999999999999
Q ss_pred HHcCCCCEEEEEeeecCCCeEEEEeeecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHh
Q 022367 161 KKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERL 240 (298)
Q Consensus 161 ~~L~~~~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l 240 (298)
+.|+ .|+.++++.|..... +...+.|+++||+|+|||||+|||+|+.++++.|+++||++|+++||||+|+++|.++|
T Consensus 189 ~~L~-~~~~~~~~~r~~~~~-~~~~i~gdV~gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgif~~~a~~~l 266 (323)
T PRK02458 189 EYLD-APIAIIDYAQDDSER-EEGYIIGDVAGKKAILIDDILNTGKTFAEAAKIVEREGATEIYAVASHGLFAGGAAEVL 266 (323)
T ss_pred HHhC-CCEEEEEEecCCCcc-eeeccccccCCCEEEEEcceeCcHHHHHHHHHHHHhCCCCcEEEEEEChhcCchHHHHH
Confidence 9998 899988887754322 22346789999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCEEEEecCCCCcccCCCCCeeEEechHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 022367 241 SSGLFQEVIITNTIPVSERNYFPQLTILSVANLLGETIWRVHDDCSDGYEPYSSLGI 297 (298)
Q Consensus 241 ~~~~i~~ii~tnti~~~~~~~~~ki~~isva~lla~~i~~~~~~~s~~~~~~~~~~~ 297 (298)
.++++++|++|||+|+.. ..++|++++|++++||++|+++|+++| +|++|.
T Consensus 267 ~~s~i~~iv~TdTi~~~~-~~~~k~~~isva~lla~~i~~~~~~~s-----~~~~~~ 317 (323)
T PRK02458 267 ENAPIKEILVTDSVATKE-RVPKNVTYLSASELIADAIIRIHERKP-----LSPLFA 317 (323)
T ss_pred hhCCCCEEEEECCcCCch-hcCCCcEEEEhHHHHHHHHHHHHcCCC-----HHHHhC
Confidence 999999999999999753 346899999999999999999999999 888774
No 8
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=8.4e-78 Score=559.88 Aligned_cols=290 Identities=75% Similarity=1.203 Sum_probs=273.8
Q ss_pred CCCcccceeeeeeCCCceEEEeCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeeccCccccccccc
Q 022367 1 MGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (298)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~~ 80 (298)
||++++++++++|||||+++++.++|||+|||||||++.|+||++||||++++|||++||+|||+|+|||||+||||++.
T Consensus 41 lg~~l~~~~~~~FpDGE~~v~i~~~vrg~~V~ivqs~~~p~nd~l~eLll~~~alr~~ga~ri~~ViPYl~YaRQDr~~~ 120 (330)
T PRK02812 41 LGMDLGPMIRKRFADGELYVQIQESIRGCDVYLIQPTCAPVNDHLMELLIMVDACRRASARQITAVIPYYGYARADRKTA 120 (330)
T ss_pred hCCCceeeEEEECCCCCEEEEeCCCCCCCEEEEECCCCCCccHHHHHHHHHHHHHHHhCCceEEEEEecccccccccccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhCCCEEEEEcCCcccccCCCCcccccccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHH
Q 022367 81 GRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFA 160 (298)
Q Consensus 81 ~~~~~~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la 160 (298)
+|||+++|.+|+||+.+|+|+|+++|+|+++.++||++|++|+.+.+.+++||.+. +.+++++|+||.||.+||+.+|
T Consensus 121 ~~e~isak~vA~lL~~~g~d~vitvDlH~~~~~~fF~ipv~nl~~~~~l~~~i~~~--~~~~~vvVsPD~gg~~ra~~~A 198 (330)
T PRK02812 121 GRESITAKLVANLITKAGADRVLAMDLHSAQIQGYFDIPCDHVYGSPVLLDYLASK--NLEDIVVVSPDVGGVARARAFA 198 (330)
T ss_pred CCCCchHHHHHHHHHhcCCCEEEEEECCchHHcCccCCCceeeeChHHHHHHHHhc--CCCCeEEEEECCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999764 3568999999999999999999
Q ss_pred HHcCCCCEEEEEeeecCCCeEEEEeeecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHh
Q 022367 161 KKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERL 240 (298)
Q Consensus 161 ~~L~~~~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l 240 (298)
+.|++.++.+++|+|...+....+...|+++||+|+||||+++||+|+.++++.|+++||++|++++|||+|++++.++|
T Consensus 199 ~~L~~~~~~~~~k~R~~~~~~~~~~~~~~v~g~~viiVDDii~TG~T~~~a~~~L~~~Ga~~v~~~~tH~v~s~~a~~~l 278 (330)
T PRK02812 199 KKLNDAPLAIIDKRRQAHNVAEVLNVIGDVKGKTAILVDDMIDTGGTICEGARLLRKEGAKQVYACATHAVFSPPAIERL 278 (330)
T ss_pred HHhCCCCEEEEEeeccCCceeeeEeccccCCCCEEEEEccccCcHHHHHHHHHHHhccCCCeEEEEEEcccCChHHHHHH
Confidence 99954799999999976555445566789999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCEEEEecCCCCcccCCCCCeeEEechHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 022367 241 SSGLFQEVIITNTIPVSERNYFPQLTILSVANLLGETIWRVHDDCSDGYEPYSSLGI 297 (298)
Q Consensus 241 ~~~~i~~ii~tnti~~~~~~~~~ki~~isva~lla~~i~~~~~~~s~~~~~~~~~~~ 297 (298)
+++++++|++|||+|++....++|++.++|+++||++|+++|+++| +|++|.
T Consensus 279 ~~~~id~iv~tnti~~~~~~~~~~~~~~~va~lla~~i~~~~~~~s-----~~~l~~ 330 (330)
T PRK02812 279 SSGLFEEVIVTNTIPVPEERRFPQLKVLSVANMLGEAIWRIHEESS-----VSSMFR 330 (330)
T ss_pred hhCCCCEEEEeCCCCChhhcccCCceEEEHHHHHHHHHHHHHcCCC-----HHHhcC
Confidence 9889999999999998765567899999999999999999999999 888874
No 9
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=100.00 E-value=3.8e-77 Score=550.84 Aligned_cols=292 Identities=93% Similarity=1.374 Sum_probs=274.7
Q ss_pred CCCcccceeeeeeCCCceEEEeCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeeccCccccccccc
Q 022367 1 MGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (298)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~~ 80 (298)
||++++++++++|||||+++++.+++||++|||+||+++|+||++||||++++|||++||++|++|+||||||||||++.
T Consensus 11 lg~~l~~~~~~~FpdGE~~v~i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~a~~i~~ViPYl~YsRQDr~~~ 90 (302)
T PLN02369 11 LGLELGKITIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKRITAVIPYFGYARADRKTQ 90 (302)
T ss_pred hCCceeeeEEEECCCCCEEEEECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcCCCeEEEEeecccccccccccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhCCCEEEEEcCCcccccCCCCcccccccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHH
Q 022367 81 GRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFA 160 (298)
Q Consensus 81 ~~~~~~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la 160 (298)
+|||+++|.+|+||+++|+|+|+++|+|+++.++||++|++++.+.+.+++|+.+.....+++++++|+.||++||+.++
T Consensus 91 ~~e~isak~va~lL~~~g~d~vi~vDlHs~~i~~~F~ip~~~l~~~~~~~~~i~~~~~~~~~~vvVspd~gg~~~a~~~a 170 (302)
T PLN02369 91 GRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKTISSPDLVVVSPDVGGVARARAFA 170 (302)
T ss_pred CCCCchHHHHHHHHHhcCCCEEEEEECCchHHhhccCCceecccchHHHHHHHHHhCCCCCceEEEEECcChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999775433467899999999999999999
Q ss_pred HHcCCCCEEEEEeeecCCCeEEEEeeecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHh
Q 022367 161 KKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERL 240 (298)
Q Consensus 161 ~~L~~~~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l 240 (298)
+.+++.++.+++|+|++.+....+...|+++||+|+|||||++||+|+.++++.|++.||++|++++|||+|++++.++|
T Consensus 171 ~~l~~~~~~~l~k~R~~~~~~~~~~~~~~v~g~~viivDDii~TG~Tl~~a~~~l~~~Ga~~v~~~~tH~v~~~~a~~~l 250 (302)
T PLN02369 171 KKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACATHAVFSPPAIERL 250 (302)
T ss_pred HHcCCCCEEEEEEecCCcceeeeEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHhCCCCEEEEEEEeeeeCHHHHHHH
Confidence 99944899999999986665555567889999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCEEEEecCCCCcccCCCCCeeEEechHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 022367 241 SSGLFQEVIITNTIPVSERNYFPQLTILSVANLLGETIWRVHDDCSDGYEPYSSLGI 297 (298)
Q Consensus 241 ~~~~i~~ii~tnti~~~~~~~~~ki~~isva~lla~~i~~~~~~~s~~~~~~~~~~~ 297 (298)
++++++++++|||+|++....++|++++|++++||++|+++|+++| ++++|.
T Consensus 251 ~~~~~~~iv~t~ti~~~~~~~~~~~~~~~v~~~la~~i~~~~~~~s-----~~~~~~ 302 (302)
T PLN02369 251 SSGLFQEVIVTNTIPVSEKNYFPQLTVLSVANLLGETIWRVHDDCS-----VSSIFD 302 (302)
T ss_pred HhCCCCEEEEeCCCCChhhcccCCceEEEHHHHHHHHHHHHhcCCC-----hHHhcC
Confidence 9989999999999998765567899999999999999999999999 888873
No 10
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=5.3e-76 Score=545.13 Aligned_cols=289 Identities=56% Similarity=0.901 Sum_probs=273.3
Q ss_pred CCCcccceeeeeeCCCceEEEeCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeeccCccccccccc
Q 022367 1 MGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (298)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~~ 80 (298)
||.+++++++++|||||+++++.++++|+||||+||++.|+||++|||+++++|||++||++|++|+||||||||||++.
T Consensus 20 lg~~~~~~~~~~FpdGE~~vri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~ga~~i~lViPYl~YsRQDr~~~ 99 (309)
T PRK01259 20 LGIPLGKASVGRFSDGEISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRASAGRITAVIPYFGYARQDRKAR 99 (309)
T ss_pred hCCceeeeEEEECCCCCEEEEeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHHHHHHcCCceEEEEeeccccchhhhhhc
Confidence 68899999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhCCCEEEEEcCCcccccCCCCcccccccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHH
Q 022367 81 GRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFA 160 (298)
Q Consensus 81 ~~~~~~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la 160 (298)
+|||++++.+|+||+++|+|+|+++|+|+++.++||++|++++.+.+.+++++.+. +.+++++++|+.||.+||+.+|
T Consensus 100 ~ge~isak~~a~lL~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~l~~~i~~~--~~~~~vvv~pd~Gg~~~A~~la 177 (309)
T PRK01259 100 SRVPITAKLVANLLETAGADRVLTMDLHADQIQGFFDIPVDNLYGSPILLEDIKQK--NLENLVVVSPDVGGVVRARALA 177 (309)
T ss_pred cCCCchHHHHHHHHhhcCCCEEEEEcCChHHHcCcCCCCceeeeecHHHHHHHHhc--CCCCcEEEEECCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999775 3578899999999999999999
Q ss_pred HHcCCCCEEEEEeeecCCCeEEEEeeecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHh
Q 022367 161 KKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERL 240 (298)
Q Consensus 161 ~~L~~~~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l 240 (298)
+.|+ .++.+++|.|...+..+.+...|+++||+|+|||||++||+|+.++++.|+++|+++|+++||||+|++++.+++
T Consensus 178 ~~Lg-~~~~~~~k~r~~~~~~~~~~~~~~~~g~~vliVDDii~TG~T~~~a~~~l~~~Ga~~v~~~~tH~i~~~~a~~~l 256 (309)
T PRK01259 178 KRLD-ADLAIIDKRRPRANVSEVMNIIGDVEGRDCILVDDMIDTAGTLCKAAEALKERGAKSVYAYATHPVLSGGAIERI 256 (309)
T ss_pred HHhC-CCEEEEEeecccceeEEEEeecccCCCCEEEEEecccCcHHHHHHHHHHHHccCCCEEEEEEEeeeCChHHHHHH
Confidence 9998 899999999876655455566789999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCEEEEecCCCCccc-CCCCCeeEEechHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 022367 241 SSGLFQEVIITNTIPVSER-NYFPQLTILSVANLLGETIWRVHDDCSDGYEPYSSLGI 297 (298)
Q Consensus 241 ~~~~i~~ii~tnti~~~~~-~~~~ki~~isva~lla~~i~~~~~~~s~~~~~~~~~~~ 297 (298)
.+++++++++|||+|++.+ ..++|++++|+|++||++|+++|+++| +|++|.
T Consensus 257 ~~~~~~~iv~t~ti~~~~~~~~~~k~~~isva~~ia~~i~~~~~~~s-----~~~l~~ 309 (309)
T PRK01259 257 ENSVIDELVVTDSIPLSEEAKKCDKIRVLSVAPLLAEAIRRISNEES-----VSSLFD 309 (309)
T ss_pred hcCCCCEEEEecCcccchhhccCCCeEEEEcHHHHHHHHHHHhcCCC-----hHHhcC
Confidence 9989999999999998755 457899999999999999999999999 888873
No 11
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-77 Score=530.60 Aligned_cols=291 Identities=49% Similarity=0.819 Sum_probs=276.0
Q ss_pred CCCcccceeeeeeCCCceEEEeCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeeccCccccccccc
Q 022367 1 MGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (298)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~~ 80 (298)
||++++++++++|+|||++|++.++|||+|||++||.++|.||+|||||.|++|||+++|++||+|+|||||+||||+..
T Consensus 23 lgi~l~~v~~kkf~nge~~v~i~esvR~~dV~iiqsgsg~ind~lmELLI~I~ac~~asa~~vTaViP~Fpyarq~~k~~ 102 (316)
T KOG1448|consen 23 LGIELGKVNLKKFSNGETSVQIGESVRGEDVYIIQSGSGPINDNLMELLIMINACKRASASRVTAVIPYFPYARQDKKDK 102 (316)
T ss_pred hCCCcceeeeEEccCCcEEEecccccccCcEEEeccCCCcchHHHHHHHHHHHhcchhhhheeEEeccCCccccchhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhCCCEEEEEcCCcccccCCCCcccccccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHH
Q 022367 81 GRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFA 160 (298)
Q Consensus 81 ~~~~~~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la 160 (298)
.+.+++||++|+||..+|+|++|++|+|..|.++||++|++|+++.|.+.+|+++...++++.++|+||.||.+|+..+|
T Consensus 103 ~r~~i~aklVanlls~aG~dhvItmDlHa~Q~qgfF~ipVdnly~~p~~l~~ir~~~~~~~~~vivSPdaGgaKR~~s~a 182 (316)
T KOG1448|consen 103 SRAPILAKLVANLLSSAGADHVITMDLHASQIQGFFDIPVDNLYAEPAVLNYIRENIPDSENAVIVSPDAGGAKRVTSLA 182 (316)
T ss_pred hhhhHHHHHHHhhhhccCCceEEEecccchhhCceeeccchhhccchHHHHHHHhhCCCccceEEECCCcchhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999987778899999999999999999999
Q ss_pred HHcCCCCEEEEEeeecCCCeEE-EEeeecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHH
Q 022367 161 KKLSDAPLAIVDKRRQGHNVAE-VMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIER 239 (298)
Q Consensus 161 ~~L~~~~~~~~~k~r~~~~~~~-~~~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~ 239 (298)
+.|+ ..+..+.|+|+..++.. .+.+.||++||.++|||||++|++|+.++++.|.++||++|++++|||+|++++.++
T Consensus 183 d~l~-~~fali~ker~k~~~v~~~m~LVGDv~gkvailVDDm~dt~GTl~~aa~~L~~~GA~kV~a~~THgVfs~~a~er 261 (316)
T KOG1448|consen 183 DRLN-LDFALIHKERRKANEVDIRMVLVGDVKGKVAILVDDMADTCGTLIKAADKLLEHGAKKVYAIVTHGVFSGPAIER 261 (316)
T ss_pred Hhhc-chhhhhhhhhhcccccceEEEEEeccCCcEEEEecccccccchHHHHHHHHHhcCCceEEEEEcceeccccHHHH
Confidence 9998 77777777776555554 667899999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCEEEEecCCCCcccCCCCCeeEEechHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 022367 240 LSSGLFQEVIITNTIPVSERNYFPQLTILSVANLLGETIWRVHDDCSDGYEPYSSLGI 297 (298)
Q Consensus 240 l~~~~i~~ii~tnti~~~~~~~~~ki~~isva~lla~~i~~~~~~~s~~~~~~~~~~~ 297 (298)
+.++.++++++|||+|+.++...+|+.+|++++.+||+|+|.|+|+| +|.||.
T Consensus 262 ~~~s~~~~~vvtnt~p~~~~~~~~~~~~Idvs~~~ae~irr~h~ges-----vS~lf~ 314 (316)
T KOG1448|consen 262 LNESALDRVVVTNTIPIDDSCLEPKLTTIDVSPVLAEAIRRTHNGES-----VSYLFS 314 (316)
T ss_pred hhhcccceEEEEEeecccccccCCcccEEeeccccchheEEecCCee-----eeeecc
Confidence 99999999999999999866555899999999999999999999999 777664
No 12
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=6.9e-75 Score=535.59 Aligned_cols=272 Identities=29% Similarity=0.466 Sum_probs=253.1
Q ss_pred CCCcccceeeeeeCCCceEEEeCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeeccCccccccccc
Q 022367 1 MGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (298)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~~ 80 (298)
||++++++++++|||||.++++.++|||+||||+||+++| ||++||||++++|||++||++||+|+||||||||||++.
T Consensus 22 lg~~~~~~~~~~F~dGE~~v~i~~~v~g~~V~ivqs~~~~-n~~l~elll~~~alr~~~a~~i~~ViPY~~YaRqDr~~~ 100 (301)
T PRK07199 22 LGVEVGRIELHRFPDGESYVRLDSPVAGRTVVLVCSLDRP-DEKLLPLLFAAEAARELGARRVGLVAPYLAYMRQDIAFH 100 (301)
T ss_pred hCCceeeeEEEECCCCCEEEEECCCCCCCEEEEECCCCCC-cHHHHHHHHHHHHHHHcCCCeEEEEeecccccccccccC
Confidence 6899999999999999999999999999999999999888 999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhCCCEEEEEcCCc---ccccCCCCcccccccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHH
Q 022367 81 GRESIAAKLVANLITEAGANRVLACDLHS---GQSMGYFDIPVDHVYGQPVILDYLASKAISSDDLVVVSPDVGGVARAR 157 (298)
Q Consensus 81 ~~~~~~a~~va~ll~~~g~d~ii~vdlHs---~~~~~~f~i~~~~l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~ 157 (298)
+|||+++|.+|+||++ |+|+|+++|+|+ .++++||++|.+++.+.+.+++++.+. .+++++++||.||.+|++
T Consensus 101 ~ge~isak~vA~ll~~-~~d~vit~DlH~~~~~~~~~~f~ip~~nl~~~~~la~~l~~~---~~~~vVVsPd~g~~~~a~ 176 (301)
T PRK07199 101 PGEAISQRHFARLLSG-SFDRLVTVDPHLHRYPSLSEVYPIPAVVLSAAPAIAAWIRAH---VPRPLLIGPDEESEQWVA 176 (301)
T ss_pred CCCCccHHHHHHHHHh-hcCeEEEEeccchhhHHhcCcccCCccccchHHHHHHHHHhc---CCCcEEEEeCCChHHHHH
Confidence 9999999999999985 899999999998 578899999999999999999999764 357899999999999999
Q ss_pred HHHHHcCCCCEEEEEeeecCCCeEEEEee-ecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccH
Q 022367 158 AFAKKLSDAPLAIVDKRRQGHNVAEVMNL-IGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPA 236 (298)
Q Consensus 158 ~la~~L~~~~~~~~~k~r~~~~~~~~~~~-~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a 236 (298)
.+|+.++ .++.+++|+|.+.+..+.... .++++||+|+|||||+|||+|+.++++.||++||++|+++||||+|+++|
T Consensus 177 ~la~~l~-~~~~~~~K~R~~~~~~~~~~~~~~~v~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgvfs~~a 255 (301)
T PRK07199 177 AVAERAG-APHAVLRKTRHGDRDVEISLPDAAPWAGRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDCVVVHALFAGDA 255 (301)
T ss_pred HHHHHhC-CCEEEEEEEecCCCeEEEEeccCcccCCCEEEEEecccCcHHHHHHHHHHHHHCCCcEEEEEEEeeeCChHH
Confidence 9999998 899999999976654443322 34689999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCEEEEecCCCCcccCCCCCeeEEechHHHHHHHHHHHcCC
Q 022367 237 IERLSSGLFQEVIITNTIPVSERNYFPQLTILSVANLLGETIWRVHDDC 285 (298)
Q Consensus 237 ~~~l~~~~i~~ii~tnti~~~~~~~~~ki~~isva~lla~~i~~~~~~~ 285 (298)
.++|.++++++|++|||+|++ .+++|+|++||++|+++|++.
T Consensus 256 ~~~l~~~~i~~iv~Tdti~~~-------~~~~sva~lla~~i~~~~~~~ 297 (301)
T PRK07199 256 YSALAAAGIARVVSTDTVPHP-------SNAISLAPLLAEALRREFDDP 297 (301)
T ss_pred HHHHHhCCCCEEEEeCCccCC-------CCEEehHHHHHHHHHHHhcCC
Confidence 999999999999999999986 238999999999999998864
No 13
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=7.7e-75 Score=547.11 Aligned_cols=286 Identities=28% Similarity=0.455 Sum_probs=261.0
Q ss_pred CcccceeeeeeCCCceEEEeCCCccCCeEEEEecCCC--------------CCchhHHHHHHHHHHHHhcCCCeEEEEee
Q 022367 3 LDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCP--------------PANENIMELLVMIDACRRASAKNITAVIP 68 (298)
Q Consensus 3 ~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~iiqs~~~--------------~~~~~l~ell~~~~a~r~~~a~~i~~viP 68 (298)
++++++++++|||||++|++.++|||+|||||||++. |+||++||||++++||| +||+||++|+|
T Consensus 52 ~~l~~~~~~~FpDGE~~vri~~~Vrg~dV~ivqs~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~ViP 130 (382)
T PRK06827 52 SYLIPAKFIRFSNGEAKGEILESVRGKDIYILQDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVIMP 130 (382)
T ss_pred ceeeeeEEEECCCCCEEEEECCCCCCCeEEEEecCCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEEEee
Confidence 4599999999999999999999999999999999974 78999999999999999 99999999999
Q ss_pred ccCcccccccccCCCchHHHHHHHHHHHhCCCEEEEEcCCcccccCCCC-cccccccchHHHHHHHHhhc----cCCCCe
Q 022367 69 YFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFD-IPVDHVYGQPVILDYLASKA----ISSDDL 143 (298)
Q Consensus 69 Y~~YsRqdr~~~~~~~~~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~-i~~~~l~~~~~la~~l~~~~----~~~~~~ 143 (298)
|||||||||+ .+|||++++.+|+||+++|+|+|+++|+|++++++||+ .|++++.+.+.+++|+.+.. .+.+++
T Consensus 131 Y~~YaRQDr~-~~~e~itak~vA~lL~~~G~d~vitvDlHs~~i~~~F~~~pvdnl~a~~~l~~~i~~~i~~l~~d~~~~ 209 (382)
T PRK06827 131 FLYESRQHKR-KGRESLDCALALQELEELGVDNIITFDAHDPRIENAIPLMGFENLYPSYQIIKALLKNEKDLEIDKDHL 209 (382)
T ss_pred cccccccccc-cCCCCccHHHHHHHHHHcCCCeEEEecCChHHhcccCCCCCcCCcCchHHHHHHHHHhcccccccCCCc
Confidence 9999999999 79999999999999999999999999999999999998 47999999999999996542 133678
Q ss_pred EEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCCCeE------EEEeeec-CCCCCEEEEEeCccCchHHHHHHHHHHH
Q 022367 144 VVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVA------EVMNLIG-DVKGKVAVMVDDMIDTAGTISKGAALLH 216 (298)
Q Consensus 144 viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~~------~~~~~~g-~v~gk~ViIVDDii~TG~Tl~~a~~~Lk 216 (298)
++|+||.||++||+.+|+.|+ .|+.+++|+|...+.. ..+...| +++||+|+|||||++||+|+.++++.|+
T Consensus 210 VVVsPD~Gg~~rA~~~A~~Lg-~~~ai~~K~R~~~~~~~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~Tl~~aa~~Lk 288 (382)
T PRK06827 210 MVISPDTGAMDRAKYYASVLG-VDLGLFYKRRDYSRVVNGRNPIVAHEFLGRDVEGKDVLIVDDMIASGGSMIDAAKELK 288 (382)
T ss_pred EEEEECccchHHHHHHHHHhC-CCEEEEEcccCCcccccCCCceEEEecCCcccCCCEEEEEeCCcCcHHHHHHHHHHHH
Confidence 999999999999999999998 8999999998643211 2234567 8999999999999999999999999999
Q ss_pred HcCCCEEEEEEEeccCCccHHHHhhcC----CCCEEEEecCCCCccc-CCCCCeeEEechHHHHHHHHHHHcCCCCCCCC
Q 022367 217 QEGAREVYACSTHAVFSPPAIERLSSG----LFQEVIITNTIPVSER-NYFPQLTILSVANLLGETIWRVHDDCSDGYEP 291 (298)
Q Consensus 217 ~~Ga~~V~~~~tH~l~~~~a~~~l~~~----~i~~ii~tnti~~~~~-~~~~ki~~isva~lla~~i~~~~~~~s~~~~~ 291 (298)
++||++|+++||||+|+ +|.++|.++ ++++|++|||+|++++ ..++|++++|||++||++|+++|+++|
T Consensus 289 ~~GA~~V~~~~tH~vf~-~a~~~l~~~~~~g~i~~iv~TdTi~~~~~~~~~~~~~~isva~llA~~I~~~~~~~s----- 362 (382)
T PRK06827 289 SRGAKKIIVAATFGFFT-NGLEKFDKAYEEGYFDRIIGTNLVYHPEELLSKPWYIEVDMSKLIARIIDALNHDVS----- 362 (382)
T ss_pred HcCCCEEEEEEEeecCh-HHHHHHHhhcccCCCCEEEEeCCCcCchhhcccCCeEEEEcHHHHHHHHHHHHcCCC-----
Confidence 99999999999999999 999999653 6999999999998754 357899999999999999999999999
Q ss_pred CCCCCC
Q 022367 292 YSSLGI 297 (298)
Q Consensus 292 ~~~~~~ 297 (298)
+|+||.
T Consensus 363 ~s~l~~ 368 (382)
T PRK06827 363 LSKLLD 368 (382)
T ss_pred HHHHhC
Confidence 888874
No 14
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=2.5e-72 Score=521.35 Aligned_cols=286 Identities=57% Similarity=0.909 Sum_probs=269.9
Q ss_pred CCCcccceeeeeeCCCceEEEeCCCccCCeEEEE-ecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeeccCcccccccc
Q 022367 1 MGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLV-QPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKT 79 (298)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~ii-qs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~ 79 (298)
||++++++++++|||||+++++.++++|+||||+ ||+++|+||++|||+++++|||++||++|++|+||||||||||++
T Consensus 20 lg~~~~~~~~~~FpdGE~~v~i~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~~a~r~~ga~~i~~v~PYl~Y~RqDr~~ 99 (308)
T TIGR01251 20 LGLPLGDVEVKRFPDGELYVRINESVRGKDVFIIQQSTSAPVNDNLMELLIMIDALKRASAKSITAVIPYYGYARQDKKF 99 (308)
T ss_pred hCCeeeeeEEEECCCCCEEEEECCCCCCCeEEEEeCCCCCCccHHHHHHHHHHHHHHHcCCCeEEEEEEecccchhcccc
Confidence 6889999999999999999999999999999999 999988999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHhCCCEEEEEcCCcccccCCCCcccccccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHH
Q 022367 80 QGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAF 159 (298)
Q Consensus 80 ~~~~~~~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~l 159 (298)
.+|||++++.+|+||+++|+|+++++|+|+++.++||++|.+++.+.+.+++++.+.. .+++++++|+.||.++|..+
T Consensus 100 ~~ge~is~~~~a~ll~~~g~d~vit~DlHs~~~~~~f~ip~~~l~a~~~l~~~i~~~~--~~~~viv~pd~g~~~~A~~l 177 (308)
T TIGR01251 100 KSREPISAKLVANLLETAGADRVLTVDLHSPQIQGFFDVPVDNLYASPVLAEYLKKKI--LDNPVVVSPDAGGVERAKKV 177 (308)
T ss_pred CCCCCchHHHHHHHHHHcCCCEEEEecCChHHhcCcCCCceecccCHHHHHHHHHhhC--CCCCEEEEECCchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998753 46789999999999999999
Q ss_pred HHHcCCCCEEEEEeeec-CCCeEEEEeeecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHH
Q 022367 160 AKKLSDAPLAIVDKRRQ-GHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIE 238 (298)
Q Consensus 160 a~~L~~~~~~~~~k~r~-~~~~~~~~~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~ 238 (298)
|+.|+ .|+.+++|.|. ..+........++++||+|+||||+++||+|+.++++.|+++||++|+++++|++|++++.+
T Consensus 178 A~~Lg-~~~~~i~k~r~~~~~~~~~~~~~~~v~g~~vliVDDii~tG~Tl~~a~~~l~~~ga~~v~~~~th~v~~~~a~~ 256 (308)
T TIGR01251 178 ADALG-CPLAIIDKRRISATNEVEVMNLVGDVEGKDVVIVDDIIDTGGTIAKAAEILKSAGAKRVIAAATHGVFSGPAIE 256 (308)
T ss_pred HHHhC-CCEEEEEEEecCCCCEEEEEecccccCCCEEEEEccccCCHHHHHHHHHHHHhcCCCEEEEEEEeeecCcHHHH
Confidence 99998 89999999997 44444444567889999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCEEEEecCCCCcccCCCCCeeEEechHHHHHHHHHHHcCCCCCCCCCCCCC
Q 022367 239 RLSSGLFQEVIITNTIPVSERNYFPQLTILSVANLLGETIWRVHDDCSDGYEPYSSLG 296 (298)
Q Consensus 239 ~l~~~~i~~ii~tnti~~~~~~~~~ki~~isva~lla~~i~~~~~~~s~~~~~~~~~~ 296 (298)
+|.++++++|++|||+|+. +.++|++.+|++++||++|+++|+++| ++++|
T Consensus 257 ~l~~~~~~~iv~tdt~~~~--~~~~~~~~v~va~~la~~i~~~~~~~s-----~~~~~ 307 (308)
T TIGR01251 257 RIANAGVEEVIVTNTIPHE--KHKPKVSVISVAPLIAEAIRRIHNNES-----VSSLF 307 (308)
T ss_pred HHHhCCCCEEEEeCCCCcc--ccCCCcEEEEhHHHHHHHHHHHhcCCC-----hHHhc
Confidence 9999999999999999985 467899999999999999999999999 88776
No 15
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=4e-71 Score=507.90 Aligned_cols=266 Identities=33% Similarity=0.595 Sum_probs=247.6
Q ss_pred CCCcccceeeeeeCCCceEEEeCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeeccCccccccccc
Q 022367 1 MGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (298)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~~ 80 (298)
||++++++++++|||||+++++.++++|++|||+|++. |+||++||||++++|||++||+||++|+|||||+||||++.
T Consensus 19 l~~~~~~~~~~~FpdGE~~v~i~~~v~g~~v~i~~~~~-~~~d~l~ell~~~~alr~~ga~~i~~v~PY~~YaRqDr~~~ 97 (285)
T PRK00934 19 LNTELALVETKRFPDGELYVRILGEIDGEDVVIISTTY-PQDENLVELLLLIDALRDEGAKSITLVIPYLGYARQDKRFK 97 (285)
T ss_pred HCCceEeeEEEECCCCCEEEEECCCcCCCEEEEEeCCC-CCcHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccccccC
Confidence 68999999999999999999999999999999999864 67899999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhCCCEEEEEcCCcccccCCCCcccccccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHH
Q 022367 81 GRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFA 160 (298)
Q Consensus 81 ~~~~~~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la 160 (298)
+|||+++|.+|+||+++| |+|+++|+|++++++||++|.+|+++.+.+++++.+ +.+++++++|+.||.++|+.+|
T Consensus 98 ~ge~isak~~a~ll~~~~-d~vitvD~H~~~~~~~f~~~~~~l~a~~~la~~i~~---~~~~~vvv~pd~Ga~~~a~~lA 173 (285)
T PRK00934 98 PGEPISARAIAKIISAYY-DRIITINIHEPSILEFFPIPFINLDAAPLIAEYIGD---KLDDPLVLAPDKGALELAKEAA 173 (285)
T ss_pred CCCCccHHHHHHHHHHhc-CEEEEEcCChHHHcCcCCCcEeEeecHHHHHHHHHh---cCCCCEEEEeCCchHHHHHHHH
Confidence 999999999999999998 999999999999999999999999999999999954 2356799999999999999999
Q ss_pred HHcCCCCEEEEEeeecCCCeEEEEeeecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHh
Q 022367 161 KKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERL 240 (298)
Q Consensus 161 ~~L~~~~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l 240 (298)
+.++ .|+.+++|.|...+..+.....++++||+|+|||||+|||+|+.++++.|+++||++|+++|+||+|++++.++|
T Consensus 174 ~~l~-~~~~~i~k~r~~~~~~~~~~~~~~v~Gk~VlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~~H~i~~~~a~~~l 252 (285)
T PRK00934 174 EILG-CEYDYLEKTRISPTEVEIAPKNLDVKGKDVLIVDDIISTGGTMATAIKILKEQGAKKVYVACVHPVLVGDAILKL 252 (285)
T ss_pred HHhC-CCEEEEEEEecCCCeEEEeccccccCCCEEEEEcCccccHHHHHHHHHHHHHCCCCEEEEEEEeeccCcHHHHHH
Confidence 9998 899999999875544333333468999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCEEEEecCCCCcccCCCCCeeEEechHHHHHHHH
Q 022367 241 SSGLFQEVIITNTIPVSERNYFPQLTILSVANLLGETIW 279 (298)
Q Consensus 241 ~~~~i~~ii~tnti~~~~~~~~~ki~~isva~lla~~i~ 279 (298)
.++++++|++|||+|+ +++++|+|++|||+|+
T Consensus 253 ~~~~i~~i~~tnti~~-------~~~~~~va~~la~~i~ 284 (285)
T PRK00934 253 YNAGVDEIIVTDTLES-------EVSKISVAPLIADLLK 284 (285)
T ss_pred HhCCCCEEEEcCCCCC-------CceEEEcHHHHHHHHh
Confidence 9999999999999985 3789999999999995
No 16
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=100.00 E-value=4.8e-71 Score=511.55 Aligned_cols=271 Identities=26% Similarity=0.401 Sum_probs=245.3
Q ss_pred CCcccceeeeeeCCCceEEEe--CCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeeccCcccccccc
Q 022367 2 GLDLGKIKIKRFADGEIYVQL--QESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKT 79 (298)
Q Consensus 2 ~~~~~~~~~~~F~dGE~~v~i--~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~ 79 (298)
|++++++++++|||||.++++ .++|||++|||+||++.| |++||||++++|||++||++|++|+|||||+||||++
T Consensus 38 g~~l~~~~~~~FpDGE~~v~v~~~~~vrg~~V~ivqs~~~p--d~lmELLl~~dAlr~~ga~~i~~ViPY~~YaRQDr~~ 115 (326)
T PLN02297 38 AIELGSINWRKFPDGFPNLFINNAHGIRGQHVAFLASFSSP--AVIFEQLSVIYALPKLFVASFTLVLPFFPTGTSERVE 115 (326)
T ss_pred CCceeeeEEEECCCCCEEEEEcCCCCcCCCeEEEECCCCCC--hHHHHHHHHHHHHHHcCCCEEEEEeeCChhhcCCCCC
Confidence 789999999999999755555 699999999999999876 7899999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHH-----hCCCEEEEEcCCcccccCCCCcccccc--cchHHHHHHHHhhccCCCCeEEEeeCCCh
Q 022367 80 QGRESIAAKLVANLITE-----AGANRVLACDLHSGQSMGYFDIPVDHV--YGQPVILDYLASKAISSDDLVVVSPDVGG 152 (298)
Q Consensus 80 ~~~~~~~a~~va~ll~~-----~g~d~ii~vdlHs~~~~~~f~i~~~~l--~~~~~la~~l~~~~~~~~~~viv~p~~Gg 152 (298)
.+|||++++.+|+||++ +|+|+|+++|+|+.+.++||+.|.+++ ++.+.+++|+.+.. +.+++++|+||.||
T Consensus 116 ~~ge~isak~vA~ll~~~~~~~~g~d~vitvDlH~~~~~~fF~~~~~~l~l~a~~~l~~~i~~~~-~~~~~vvVsPD~Ga 194 (326)
T PLN02297 116 REGDVATAFTLARILSNIPISRGGPTSLVIFDIHALQERFYFGDNVLPCFESGIPLLKKRLQQLP-DSDNIVIAFPDDGA 194 (326)
T ss_pred CCCCCchHHHHHHHHhcccccccCCCEEEEEeCCChHHCCccCCcccchhhccHHHHHHHHHhcc-ccCCcEEEecCccH
Confidence 99999999999999999 799999999999999999999888865 78999999997631 34678999999999
Q ss_pred HHHHHHHHHHcCCCCEEEEEeeecCCCeEEEEeeecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccC
Q 022367 153 VARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVF 232 (298)
Q Consensus 153 ~~~a~~la~~L~~~~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~ 232 (298)
.+|+..++ ++ .++.+++|+|.+... ......++++||+|+|||||+|||+|+.++++.|+++||++|+++||||+|
T Consensus 195 ~~ra~~~a--~~-~~~~~~~K~R~g~~~-~~~~~~~dv~gr~vlIVDDIidTG~Tl~~aa~~L~~~Ga~~V~~~~THglf 270 (326)
T PLN02297 195 WKRFHKQF--EH-FPMVVCTKVREGDKR-IVRIKEGNPAGRHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHGVF 270 (326)
T ss_pred HHHHHHHc--CC-CCEEEEEeEECCCce-EEEecccccCCCeEEEEecccCcHHHHHHHHHHHHHCCCcEEEEEEECccc
Confidence 99988876 45 899999999975332 233567899999999999999999999999999999999999999999999
Q ss_pred CccHHHHhhc------CCCCEEEEecCCCCccc--CCCCCeeEEechHHHHHHHH
Q 022367 233 SPPAIERLSS------GLFQEVIITNTIPVSER--NYFPQLTILSVANLLGETIW 279 (298)
Q Consensus 233 ~~~a~~~l~~------~~i~~ii~tnti~~~~~--~~~~ki~~isva~lla~~i~ 279 (298)
+++|.++|.+ +++++|++|||||++++ ..++|++++|+|++||++|.
T Consensus 271 s~~a~~~l~~~~~~~~~~i~~iv~TdTip~~~~~~~~~~k~~~isva~llAe~i~ 325 (326)
T PLN02297 271 PNESWERFTHDNGGPEAGFAYFWITDSCPQTVKAVRGKAPFEVLSLAGSIADALQ 325 (326)
T ss_pred ChhHHHHHHhcccccccCcCEEEEcCCccCChhhcccCCCcEEEEcHHHHHHHhc
Confidence 9999999987 48999999999998754 34689999999999999984
No 17
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=100.00 E-value=2.1e-64 Score=436.76 Aligned_cols=289 Identities=32% Similarity=0.586 Sum_probs=265.9
Q ss_pred CCCcccceeeeeeCCCceEEEeCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeeccCccccccccc
Q 022367 1 MGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (298)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~~ 80 (298)
||+++++..+.+-+|+|+.|+|.++|||+||||+|+.+..+|.++||||+|+.|||.++|++|+.||||||||+|- +++
T Consensus 28 lgi~~g~~~vy~~tnret~vei~~svrgkdvfiiqt~skdvn~~vmellim~yackts~aksiigvipy~pyskqc-kmr 106 (354)
T KOG1503|consen 28 LGIELGKATVYQKTNRETRVEIKESVRGKDVFIIQTGSKDVNNDVMELLIMAYACKTSCAKSIIGVIPYLPYSKQC-KMR 106 (354)
T ss_pred hcccccceEEEecCCCceEEEhhhhccCceEEEEEecCcccchHHHHHHHHHHHHhhhhhhceEEEeecCccchhh-hhh
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999994 456
Q ss_pred CCCchHHHHHHHHHHHhCCCEEEEEcCCcccccCCCCcccccccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHH
Q 022367 81 GRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFA 160 (298)
Q Consensus 81 ~~~~~~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la 160 (298)
.+.++..|++|.|+.++|..++|++|||...++|||++|+||+.++|.|.+||.+..+++++.++|+-..|..++|+.+|
T Consensus 107 krgsiv~klla~mmckaglthlitmdlhqkeiqgff~~pvdnlraspfllqyiqe~ipdyrnavivaksp~~akka~sya 186 (354)
T KOG1503|consen 107 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFSIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPGVAKKAQSYA 186 (354)
T ss_pred hcccHHHHHHHHHHHhcccceEEeehhhhHhhcceecccccccccCHHHHHHHHHhCccccceEEEecCcchhhHHHhHH
Confidence 78889999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred HHcCCCCEEEEEeeecC-----------CC---------eEE----------EEeeecCCCCCEEEEEeCccCchHHHHH
Q 022367 161 KKLSDAPLAIVDKRRQG-----------HN---------VAE----------VMNLIGDVKGKVAVMVDDMIDTAGTISK 210 (298)
Q Consensus 161 ~~L~~~~~~~~~k~r~~-----------~~---------~~~----------~~~~~g~v~gk~ViIVDDii~TG~Tl~~ 210 (298)
++|. +.+++++-+.+. +. ..+ ...+.||+.||-.++|||+||.-.++.+
T Consensus 187 erlr-lglavihge~k~~e~d~~dgr~spp~~~~~t~~~~~~lp~~~~k~kppltvvgdvggriaimvddiiddvqsfva 265 (354)
T KOG1503|consen 187 ERLR-LGLAVIHGEQKDTESDLVDGRHSPPPVVTATTHPSLELPAQISKEKPPLTVVGDVGGRIAIMVDDIIDDVQSFVA 265 (354)
T ss_pred HHHh-hceeEeeccccccccccccCCcCCCCccccccCccccCchhhcccCCCeEEEeccCceEEEEehhhHHhHHHHHH
Confidence 9987 676666543211 00 000 1256799999999999999999999999
Q ss_pred HHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEecCCCCcc-cCCCCCeeEEechHHHHHHHHHHHcCCCCCC
Q 022367 211 GAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVSE-RNYFPQLTILSVANLLGETIWRVHDDCSDGY 289 (298)
Q Consensus 211 a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tnti~~~~-~~~~~ki~~isva~lla~~i~~~~~~~s~~~ 289 (298)
|++.||+.||-++++.+|||++|.+|..+|++|.+++|++|||+|++- +.+|+|++.++++-+|+|+||||||||||||
T Consensus 266 aae~lkergaykiyv~athgllssdapr~lees~idevvvtntvphevqklqc~kiktvdislii~eairrihn~esm~y 345 (354)
T KOG1503|consen 266 AAEVLKERGAYKIYVMATHGLLSSDAPRLLEESPIDEVVVTNTVPHEVQKLQCHKIKTVDISLIISEAIRRIHNGESMSY 345 (354)
T ss_pred HHHHHHhcCceEEEEEeecccccccchhhhhcCCCceEEEecCCcHHHHhhcCCccceeehhhHHHHHHHHHhCCchHHH
Confidence 999999999999999999999999999999999999999999999974 5799999999999999999999999999887
Q ss_pred CC
Q 022367 290 EP 291 (298)
Q Consensus 290 ~~ 291 (298)
-|
T Consensus 346 lf 347 (354)
T KOG1503|consen 346 LF 347 (354)
T ss_pred HH
Confidence 44
No 18
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=100.00 E-value=3.5e-40 Score=280.29 Aligned_cols=152 Identities=43% Similarity=0.690 Sum_probs=122.1
Q ss_pred CCCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCC------------------------------CeEEEEeeecC
Q 022367 140 SDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGH------------------------------NVAEVMNLIGD 189 (298)
Q Consensus 140 ~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~------------------------------~~~~~~~~~g~ 189 (298)
+++.|||+|+.||.+||..+|+.|+ +.+.+++++|... .+...+.+.||
T Consensus 2 y~naVIVa~~~g~akRAts~Ad~L~-l~~avih~e~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~e~~~~~vVGD 80 (184)
T PF14572_consen 2 YRNAVIVAKDPGGAKRATSFADRLR-LGFAVIHGERRDSESDGVDGRHSPPMSRSAAVSSSEEIPEMTPKEKPPMNVVGD 80 (184)
T ss_dssp GGGEEEEESSGGGHHHHHHHHHHCT--EEEEE------------------------------------------EEEES-
T ss_pred CCCCEEEeCCCCchHhHHHHHHHhC-CCeeEecCccccccccccccccCCCccccccccccchhhhcccCcccceEEEEE
Confidence 5688999999999999999999998 8999888776310 00112467899
Q ss_pred CCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEecCCCCccc-CCCCCeeEE
Q 022367 190 VKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVSER-NYFPQLTIL 268 (298)
Q Consensus 190 v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tnti~~~~~-~~~~ki~~i 268 (298)
|+||+||||||||+||+|+.++++.||++||++|++++|||+|+++|.++|+++.+++|++|||||++.+ .+++|++++
T Consensus 81 V~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~aTHgvfs~~A~~~l~~s~Id~vvvTnTIp~~~~~~~~~Ki~vl 160 (184)
T PF14572_consen 81 VKGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYACATHGVFSGDAPERLEESPIDEVVVTNTIPQEEQKLQCPKIKVL 160 (184)
T ss_dssp -TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEEEEEE---TTHHHHHHHSSESEEEEETTS--HHHHHH-TTEEEE
T ss_pred ccCCeEeeecccccchHHHHHHHHHHHHcCCCEEEEEEeCcccCchHHHHHhhcCCeEEEEeccccCchhhhcCCCEeEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999753 579999999
Q ss_pred echHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 022367 269 SVANLLGETIWRVHDDCSDGYEPYSSLGI 297 (298)
Q Consensus 269 sva~lla~~i~~~~~~~s~~~~~~~~~~~ 297 (298)
|||++|||+|+|+|+||| +|.||.
T Consensus 161 dis~llaeaI~rih~~eS-----vs~LFr 184 (184)
T PF14572_consen 161 DISPLLAEAIRRIHNGES-----VSYLFR 184 (184)
T ss_dssp --HHHHHHHHHHHHHTHT-----SCCGGS
T ss_pred ehHHHHHHHHHHHHcCCC-----HHHhcC
Confidence 999999999999999999 888874
No 19
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=100.00 E-value=7.7e-36 Score=238.73 Aligned_cols=97 Identities=58% Similarity=0.975 Sum_probs=83.3
Q ss_pred CCCcccceeeeeeCCCceEEEeCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeeccCccccccccc
Q 022367 1 MGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (298)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~~ 80 (298)
||++++++++++|||||++|++.++++|+|||||||+++|+||++||||++++|||++||++|++|+|||||+||||+ .
T Consensus 20 L~~~~~~~~~~~F~dGE~~v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~i~~ViPYl~YaRQDr~-~ 98 (116)
T PF13793_consen 20 LGIPLGKVETKRFPDGETYVRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGAKRITLVIPYLPYARQDRR-K 98 (116)
T ss_dssp TTS-EE-EEEEE-TTS-EEEEESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTBSEEEEEESS-TTTTSSSS-S
T ss_pred hCCceeeeEEEEcCCCCEEEEecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCCcEEEEeccchhhhhhccC-C
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCCchHHHHHHHHHHHhC
Q 022367 81 GRESIAAKLVANLITEAG 98 (298)
Q Consensus 81 ~~~~~~a~~va~ll~~~g 98 (298)
+|||++++.+|+||+++|
T Consensus 99 ~ge~isak~~a~lL~~~G 116 (116)
T PF13793_consen 99 PGEPISAKVVAKLLSAAG 116 (116)
T ss_dssp TTC--HHHHHHHHHHHHT
T ss_pred CCCcchHHHHHHHHHhcC
Confidence 999999999999999987
No 20
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=99.86 E-value=1.3e-20 Score=160.79 Aligned_cols=153 Identities=28% Similarity=0.319 Sum_probs=122.7
Q ss_pred HHHHHHHHHhCCCEEEEEcCCcccccCCCCcccccccchHHHHHHHHhhcc-CCCCeEEEeeCCChHHHHHHHHHHcCCC
Q 022367 88 KLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAI-SSDDLVVVSPDVGGVARARAFAKKLSDA 166 (298)
Q Consensus 88 ~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~l~~~~~-~~~~~viv~p~~Gg~~~a~~la~~L~~~ 166 (298)
..++++|.+.|+.++..++|||++.++|| +++..+...|.+.+++.+... ..+.+++++|+.||+++|..+|..++ .
T Consensus 3 ~~~~~~l~~~ga~~~g~f~L~SG~~s~~y-~d~~~l~~~p~~~~~l~~~l~~~~~~d~Vvg~~~gGi~~A~~~a~~l~-~ 80 (170)
T PRK13811 3 NTIAELLISYKAIEFGDFTLASGAKSRYY-IDIKTAITHPALLKEIAAEVAKRYDFDVVAGVAVGGVPLAVAVSLAAG-K 80 (170)
T ss_pred HHHHHHHHHCCCEEECCEEEccCCcCCEE-EeCchhccCHHHHHHHHHHHHhhCCCCEEEecCcCcHHHHHHHHHHHC-C
Confidence 46899999999999999999999999988 455557677777777655431 12456899999999999999999998 8
Q ss_pred CEEEEEeeecCCCeEEEEeeecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCC
Q 022367 167 PLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLF 245 (298)
Q Consensus 167 ~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i 245 (298)
|+.+++|+++.++... ...|+++|++|+||||+++||+|+.++++.|+++||+.+.+++.-..- .++.+++++.++
T Consensus 81 p~~~~rK~~k~~g~~~--~~~g~~~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~~vdr~-~g~~~~l~~~gv 156 (170)
T PRK13811 81 PYAIIRKEAKDHGKAG--LIIGDVKGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVTVVDRE-QGAEELLAELGI 156 (170)
T ss_pred CEEEEecCCCCCCCcc--eEEcccCCCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEEEEECC-ccHHHHHHhcCC
Confidence 9999999876555432 345789999999999999999999999999999999988888754332 346677765443
No 21
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=99.73 E-value=1.1e-16 Score=137.33 Aligned_cols=152 Identities=16% Similarity=0.207 Sum_probs=110.0
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCcccccCCCCcccccccch----HHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHH
Q 022367 87 AKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQ----PVILDYLASKAISSDDLVVVSPDVGGVARARAFAKK 162 (298)
Q Consensus 87 a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~----~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~ 162 (298)
.+.+.+.|...|+=+.-.+.+-|++.+.+| +....+... +.+++++.+.. . +.+++++|+.||+++|..+|..
T Consensus 3 ~~~l~~~l~~~~a~~~g~f~l~SG~~S~~y-id~~~~~~~p~~~~~i~~~l~~~i-~-~~d~ivg~~~ggi~lA~~lA~~ 79 (176)
T PRK13812 3 TDDLIAALRDADAVQFGEFELSHGGTSEYY-VDKYLFETDPDCLRLIAEAFADRI-D-EDTKLAGVALGAVPLVAVTSVE 79 (176)
T ss_pred HHHHHHHHHHCCCEEeCCEEECcCCcCCEE-EeCeeccCCHHHHHHHHHHHHHHh-c-cCCEEEEeecchHHHHHHHHHH
Confidence 456788888888744445666677666554 333333333 44555555543 2 2379999999999999999999
Q ss_pred cCCCCEEEEEeeecCCCeEEEEeeecCC-CCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhh
Q 022367 163 LSDAPLAIVDKRRQGHNVAEVMNLIGDV-KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLS 241 (298)
Q Consensus 163 L~~~~~~~~~k~r~~~~~~~~~~~~g~v-~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~ 241 (298)
|+ .|+.+.+|++++++..+. ..|.+ +|++|+||||+++||+|+.++++.|+++|++.+.+++.-.. ..++.++++
T Consensus 80 l~-~p~~~~rk~~k~yg~~~~--~~g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~vv~~~vlvdr-~~~~~~~l~ 155 (176)
T PRK13812 80 TG-VPYVIARKQAKEYGTGNR--IEGRLDEGEEVVVLEDIATTGQSAVDAVEALREAGATVNRVLVVVDR-EEGARENLA 155 (176)
T ss_pred HC-CCEEEEeccCCcCCCCCe--EEecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeEEEEEEEEEC-CcchHHHHH
Confidence 98 899999998876553322 34666 89999999999999999999999999999998888873222 124566676
Q ss_pred cCCC
Q 022367 242 SGLF 245 (298)
Q Consensus 242 ~~~i 245 (298)
+.++
T Consensus 156 ~~g~ 159 (176)
T PRK13812 156 DHDV 159 (176)
T ss_pred hcCC
Confidence 5443
No 22
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=99.71 E-value=3e-16 Score=137.70 Aligned_cols=153 Identities=16% Similarity=0.197 Sum_probs=110.0
Q ss_pred HHHHHHHHhCCCEEEEEcCCcccccCCCCcccccccchHHHHHH----HHhhccCCCCeEEEeeCCChHHHHHHHHHHcC
Q 022367 89 LVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDY----LASKAISSDDLVVVSPDVGGVARARAFAKKLS 164 (298)
Q Consensus 89 ~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~----l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~ 164 (298)
.++.+|.+.|+=+.-.+-|-|++.+.+| +.+..+...|.+.+. +.+...+.+.+++++|+.+|+++|..+|.+++
T Consensus 12 ~l~~~l~~~gal~~g~F~L~SG~~S~~y-~D~~~i~~~p~~l~~i~~~l~~~~~~~~~d~IvG~~~~Gi~~A~~vA~~l~ 90 (206)
T PRK13809 12 QAVAILYQIGAIKFGKFILASGEETPIY-VDMRLVISSPEVLQTIATLIWRLRPSFNSSLLCGVPYTALTLATSISLKYN 90 (206)
T ss_pred HHHHHHHHcCCEEECCEEECCcCCCCEE-EEChhhccCHHHHHHHHHHHHHHhccCCCCEEEEecCccHHHHHHHHHHhC
Confidence 4566676777755555666677666555 334444444444333 33332233557999999999999999999998
Q ss_pred CCCEEEEEeeecCCCeEEEEeeecC-CCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcC
Q 022367 165 DAPLAIVDKRRQGHNVAEVMNLIGD-VKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSG 243 (298)
Q Consensus 165 ~~~~~~~~k~r~~~~~~~~~~~~g~-v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~ 243 (298)
.|+.+.+|+++.++....+...|. .+|++|+||||++|||+|+.++++.|+++|++.+.++|.-... .++.+++++.
T Consensus 91 -~p~~~~RK~~K~~G~~~~~~~~g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vlvdr~-~~~~~~l~~~ 168 (206)
T PRK13809 91 -IPMVLRRKELKNVDPSDAIKVEGLFTPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVFLDRQ-KGACQPLGPQ 168 (206)
T ss_pred -CCEEEEeCCCCCCCCcCEEEEccccCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECc-ccHHHHHHhc
Confidence 999999998877665443333554 4899999999999999999999999999999988888843322 3566777654
Q ss_pred C
Q 022367 244 L 244 (298)
Q Consensus 244 ~ 244 (298)
+
T Consensus 169 g 169 (206)
T PRK13809 169 G 169 (206)
T ss_pred C
Confidence 3
No 23
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.70 E-value=1.8e-16 Score=154.00 Aligned_cols=147 Identities=27% Similarity=0.307 Sum_probs=108.0
Q ss_pred HHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCE--EEEEeeecCC-----Ce-----EEEE--eeec-CCCC
Q 022367 128 VILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPL--AIVDKRRQGH-----NV-----AEVM--NLIG-DVKG 192 (298)
Q Consensus 128 ~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~--~~~~k~r~~~-----~~-----~~~~--~~~g-~v~g 192 (298)
.+.+.|.+......+.++..|+ +|.++|..+|+.++ +|+ .+++|++.+. .. ...+ ...+ .++|
T Consensus 263 ~~G~~La~~~~~~~d~Vv~vPd-~g~~~A~~~A~~lg-ip~~~~l~rk~~~~r~~i~~~qr~rn~~~~~~~~~~~~~v~g 340 (445)
T PRK08525 263 KMGEELAKKFPIKADFVVPVPD-SGVPAAIGYAQESG-IPFEMAIVRNHYVGRTFIEPTQEMRNLKVKLKLNPMSKVLEG 340 (445)
T ss_pred HHHHHHHHHhcccCCeEEECCc-hHHHHHHHHHHHhC-CCccceEEEeeccccccCCHHHHHHhhheeEEecccccccCC
Confidence 3445554443222344555555 67999999999998 887 5556553211 10 0111 2223 4899
Q ss_pred CEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEecCCCCc--ccCCCCCeeEEec
Q 022367 193 KVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVS--ERNYFPQLTILSV 270 (298)
Q Consensus 193 k~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tnti~~~--~~~~~~ki~~isv 270 (298)
|+|+||||+++||+|+.++++.|+++||++|+++++||+|..++.+.|..+.++++++||.-..+ +.....-+..+|+
T Consensus 341 K~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~~~hp~~~~~~~~~i~~~~~~~li~~~~~~~ei~~~~~adsl~~ls~ 420 (445)
T PRK08525 341 KRIVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLRIACPEIKFPCYYGIDTPTFEELISANKSVEEVRKYIGADSLSFLSI 420 (445)
T ss_pred CeEEEEecccCcHHHHHHHHHHHHhcCCCEEEEEEECCCcCCchhhhCcCCChhhEEEcCCCHHHHHHHhCCCeEeccCH
Confidence 99999999999999999999999999999999999999999999999999999999999974321 1124667889999
Q ss_pred hHHHHH
Q 022367 271 ANLLGE 276 (298)
Q Consensus 271 a~lla~ 276 (298)
.++..-
T Consensus 421 ~~l~~~ 426 (445)
T PRK08525 421 DELTRS 426 (445)
T ss_pred HHHHHH
Confidence 776543
No 24
>PLN02293 adenine phosphoribosyltransferase
Probab=99.69 E-value=8.9e-16 Score=132.85 Aligned_cols=109 Identities=21% Similarity=0.264 Sum_probs=91.6
Q ss_pred CCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCCCeE-----------EEEe-eecCC-CCCEEEEEeCccCchHH
Q 022367 141 DDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVA-----------EVMN-LIGDV-KGKVAVMVDDMIDTAGT 207 (298)
Q Consensus 141 ~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~~-----------~~~~-~~g~v-~gk~ViIVDDii~TG~T 207 (298)
+..+|++|+.+|+++|..+|..|+ .|+.+++|.++..+.. ..+. ..+.+ +|++|+||||+++||+|
T Consensus 62 ~~d~Ivg~e~~Gi~lA~~lA~~Lg-~p~v~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~~~i~~G~rVlIVDDvitTG~T 140 (187)
T PLN02293 62 GISVVAGIEARGFIFGPPIALAIG-AKFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHVGAVEPGERALVIDDLIATGGT 140 (187)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHC-CCEEEEEecCCCCCceEEEEEeccCCceEEEEEcCccCCCCEEEEEeccccchHH
Confidence 456999999999999999999998 8999999987532211 1111 12566 79999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEEE
Q 022367 208 ISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVII 250 (298)
Q Consensus 208 l~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~ 250 (298)
+.++++.|+++|++.+.++|.|.+...++.+++.+..+..++.
T Consensus 141 ~~~~~~~l~~~Ga~~v~~~~~~~~~~~~g~~~l~~~~~~sl~~ 183 (187)
T PLN02293 141 LCAAINLLERAGAEVVECACVIELPELKGREKLNGKPLFVLVE 183 (187)
T ss_pred HHHHHHHHHHCCCEEEEEEEEEEcCCccHHHHhcCCceEEEEe
Confidence 9999999999999999999999999989999998767766664
No 25
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=99.63 E-value=8.7e-15 Score=126.64 Aligned_cols=155 Identities=23% Similarity=0.311 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCCcccccCCCCcccccccchHHHHHHH----HhhccCCCCeEEEeeCCChHHHHHHHHH
Q 022367 86 AAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYL----ASKAISSDDLVVVSPDVGGVARARAFAK 161 (298)
Q Consensus 86 ~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~l----~~~~~~~~~~viv~p~~Gg~~~a~~la~ 161 (298)
..+.+.++|...|+=+.-.+-|-|++...+| +.+..+...|.+.+.+ .+...+.+.+.|+++..||+++|..+|.
T Consensus 15 ~~~~l~~~l~~~ga~~~g~F~L~SG~~s~~y-iD~~~~~~~p~~~~~i~~~la~~~~~~~~d~I~g~~~~GiplA~~vA~ 93 (187)
T PRK13810 15 QKQELIAALKACGAVRYGDFTLSSGKKSKYY-IDIKKASTDPKTLKLIARQAALRIKEMDVDTVAGVELGGVPLATAVSL 93 (187)
T ss_pred HHHHHHHHHHHCCCeEecCEEEcCCCcCCEE-EECchhcCCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHH
Confidence 3445778888887755555666677766555 3344444455544443 3332233456899999999999999999
Q ss_pred HcCCCCEEEEEeeecCCCeEEEEeeecCC-CCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHh
Q 022367 162 KLSDAPLAIVDKRRQGHNVAEVMNLIGDV-KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERL 240 (298)
Q Consensus 162 ~L~~~~~~~~~k~r~~~~~~~~~~~~g~v-~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l 240 (298)
.++ .|+.+++|+.+.++.... ..|.+ +|++|+||||+++||+|+.++++.++++|+..+.+++.-..- .++.++|
T Consensus 94 ~l~-~p~v~vRK~~k~~g~~~~--~~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vlvdr~-~g~~~~l 169 (187)
T PRK13810 94 ETG-LPLLIVRKSVKDYGTGSR--FVGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVVDRE-EGAEENL 169 (187)
T ss_pred HhC-CCEEEEecCCCccCCCce--EEccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEEEECC-cChHHHH
Confidence 998 999999998766554322 34554 799999999999999999999999999999988888754432 3677888
Q ss_pred hcCCC
Q 022367 241 SSGLF 245 (298)
Q Consensus 241 ~~~~i 245 (298)
++.++
T Consensus 170 ~~~gi 174 (187)
T PRK13810 170 KEADV 174 (187)
T ss_pred HHcCC
Confidence 76554
No 26
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.60 E-value=1.2e-14 Score=123.68 Aligned_cols=106 Identities=16% Similarity=0.258 Sum_probs=81.7
Q ss_pred chHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCC--EEEEEee--ecC---CCeEEE-EeeecCCCCCEEE
Q 022367 125 GQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAP--LAIVDKR--RQG---HNVAEV-MNLIGDVKGKVAV 196 (298)
Q Consensus 125 ~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~--~~~~~k~--r~~---~~~~~~-~~~~g~v~gk~Vi 196 (298)
....+|++|.+.+ ..+++++++|+.||+++|+.+++.|+ .+ +.++..+ ++. .+.... .....+++||+|+
T Consensus 11 ~i~~lA~~I~~~~-~~~~~vvv~i~~GG~~~a~~l~~~L~-~~~~v~~i~~~~Y~~~~~~~~~~~~~~~~~~~~~gk~vl 88 (166)
T TIGR01203 11 RIAELAKQITEDY-AGKPLVLLCVLKGSFPFFADLIRYIA-VPVQVDFMAVSSYGNGMQSSGDVKILKDLDLSIKGKDVL 88 (166)
T ss_pred HHHHHHHHHHHHc-CCCCeEEEEEccCCHHHHHHHHHhcC-CCceeeEEEEeeccCCCcccCceEEecCCCCCCCCCEEE
Confidence 4567888887753 44678999999999999999999998 55 4445433 211 111222 2345678999999
Q ss_pred EEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCcc
Q 022367 197 MVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPP 235 (298)
Q Consensus 197 IVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~ 235 (298)
|||||++||+|+.++++.|++.|+++|.++| ++.++
T Consensus 89 ivDDii~TG~Tl~~~~~~l~~~g~~~i~~~~---l~~k~ 124 (166)
T TIGR01203 89 IVEDIVDTGLTLQYLLDLLKARKPKSLKIVT---LLDKP 124 (166)
T ss_pred EEeeeeCcHHHHHHHHHHHHHCCCCEEEEEE---EEecC
Confidence 9999999999999999999999999999998 55554
No 27
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=99.59 E-value=3.5e-14 Score=121.79 Aligned_cols=100 Identities=25% Similarity=0.261 Sum_probs=78.6
Q ss_pred CCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCCCe-----------EEEEeeecC--CCCCEEEEEeCccCchHH
Q 022367 141 DDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNV-----------AEVMNLIGD--VKGKVAVMVDDMIDTAGT 207 (298)
Q Consensus 141 ~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~-----------~~~~~~~g~--v~gk~ViIVDDii~TG~T 207 (298)
+.++|++|+.||+++|..+|+.++ +|+.+++|.++.... ...+.+.++ ++|++|+||||+++||+|
T Consensus 51 ~~d~Ivgv~~~Gi~~a~~la~~l~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG~T 129 (175)
T PRK02304 51 DIDKIVGIEARGFIFGAALAYKLG-IGFVPVRKPGKLPRETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGT 129 (175)
T ss_pred CCCEEEEEccchHHHHHHHHHHhC-CCEEEEEcCCCCCCceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCccccHH
Confidence 457999999999999999999998 899888876542111 011223333 789999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhh
Q 022367 208 ISKGAALLHQEGAREVYACSTHAVFSPPAIERLS 241 (298)
Q Consensus 208 l~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~ 241 (298)
+.++++.|+++||+.+.++|.+..-..++.++++
T Consensus 130 l~~~~~~l~~~Ga~~v~v~vl~~~~~~~g~~~l~ 163 (175)
T PRK02304 130 LEAAIKLLERLGAEVVGAAFVIELPDLGGREKLE 163 (175)
T ss_pred HHHHHHHHHHcCCEEEEEEEEEEcccccchhhcC
Confidence 9999999999999999999965544334556665
No 28
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=99.58 E-value=5.6e-14 Score=123.22 Aligned_cols=151 Identities=23% Similarity=0.288 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhCC----CEEEEEcCCcccccCCCCcc------cccccchHHHHHHHHhhccCCCCeEEEeeCCChHHH
Q 022367 86 AAKLVANLITEAGA----NRVLACDLHSGQSMGYFDIP------VDHVYGQPVILDYLASKAISSDDLVVVSPDVGGVAR 155 (298)
Q Consensus 86 ~a~~va~ll~~~g~----d~ii~vdlHs~~~~~~f~i~------~~~l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~ 155 (298)
..+.+++.|..+|+ +++.+-..||+ .||+.. ...-.....+++++.+.. .+.+++++++.||+++
T Consensus 4 ~~~~~~~~~~~~~a~~~G~f~l~SG~~s~---~y~d~~~i~~~p~~~~~~~~~la~~i~~~~--~~~d~Ivgi~~gG~~~ 78 (202)
T PRK00455 4 YAREFIEFLLEIGALLFGHFTLSSGRKSP---YYFDCRKLLSYPEALALLGRFLAEAIKDSG--IEFDVVAGPATGGIPL 78 (202)
T ss_pred HHHHHHHHHHHcCCeeCCCEEECCCCcCC---eeEeChhhhcCHHHHHHHHHHHHHHHHhcC--CCCCEEEecccCcHHH
Confidence 45667888888876 34444444443 222321 100112334445444321 2456999999999999
Q ss_pred HHHHHHHcCCCCEEEEEeeecCCCeEEEEeeec-CCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCc
Q 022367 156 ARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIG-DVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSP 234 (298)
Q Consensus 156 a~~la~~L~~~~~~~~~k~r~~~~~~~~~~~~g-~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~ 234 (298)
|..+|+.|+ .|+.+.+|.++..+... .+.+ ..+|++|+||||+++||+|+.++++.|+++|++.+.+++....- .
T Consensus 79 A~~la~~L~-~~~~~~rk~~~~~g~~~--~~~~~~~~g~~VliVDDvi~tG~Tl~~~~~~l~~~Ga~~v~~~vlv~~~-~ 154 (202)
T PRK00455 79 AAAVARALD-LPAIFVRKEAKDHGEGG--QIEGRRLFGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAVIVDRQ-S 154 (202)
T ss_pred HHHHHHHhC-CCEEEEecccCCCCCCc--eEEccCCCCCEEEEEecccCCcHHHHHHHHHHHHcCCEEEEEEEEEECc-c
Confidence 999999998 99999988765443221 1233 35799999999999999999999999999999999998854332 2
Q ss_pred cHHHHhhcCCC
Q 022367 235 PAIERLSSGLF 245 (298)
Q Consensus 235 ~a~~~l~~~~i 245 (298)
+..+++++.++
T Consensus 155 ~~~~~~~~~g~ 165 (202)
T PRK00455 155 AAQEVFADAGV 165 (202)
T ss_pred hHHHHHHhcCC
Confidence 34455555443
No 29
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=99.58 E-value=7.3e-14 Score=121.03 Aligned_cols=132 Identities=19% Similarity=0.231 Sum_probs=88.8
Q ss_pred HHHHHHHhCCCEEEEEcCCcccccCCCCccccccc--------chHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHH
Q 022367 90 VANLITEAGANRVLACDLHSGQSMGYFDIPVDHVY--------GQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAK 161 (298)
Q Consensus 90 va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~--------~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~ 161 (298)
+++++...|+=+.-.+.+-|++...+| +....+. ....+++++.+. +.+.++|++++.||+++|..+|.
T Consensus 2 ~~~~~~~~~~~~~g~f~l~sg~~s~~y-id~~~l~~~p~~~~~~~~~La~~i~~~--~~~~d~Ivgi~~gGi~~A~~la~ 78 (187)
T TIGR01367 2 VLDIYKQAGALHEGHFLLSSGKHSPYF-LQSATLLEHPEALMELGGELAQKILDY--GLKVDFIVGPAMGGVILGYEVAR 78 (187)
T ss_pred HHHHHHHcCCeeeceEEecCCCcCCee-EechhhhcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEccCcHHHHHHHHH
Confidence 456666677644444444454433322 1111221 233444445332 33567999999999999999999
Q ss_pred HcCCCCEEEEEeeecCCCeEEEEeeecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEE
Q 022367 162 KLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACST 228 (298)
Q Consensus 162 ~L~~~~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~t 228 (298)
.|+ .|+.+.+|.+. ...........+|++|+||||+++||+|+.++++.|+++||+.+.+++.
T Consensus 79 ~L~-~~~i~~~k~~~---~~~~~~~~~l~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga~vv~~~vl 141 (187)
T TIGR01367 79 QLS-VRSIFAEREGG---GMKLRRGFAVKPGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVVGLACI 141 (187)
T ss_pred HhC-CCeEEEEEeCC---cEEEeecccCCCCCEEEEEEeeecchHHHHHHHHHHHHcCCeEEEEEEE
Confidence 998 89888776552 2111111112489999999999999999999999999999999988884
No 30
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=99.58 E-value=3e-14 Score=125.54 Aligned_cols=115 Identities=23% Similarity=0.317 Sum_probs=98.8
Q ss_pred CCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCCCe--EE-EEeeecCCCCCEEEEEeCccCchHHHHHHHHHHHH
Q 022367 141 DDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNV--AE-VMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQ 217 (298)
Q Consensus 141 ~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~--~~-~~~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~ 217 (298)
+++++|++++||++++..+++.++.+++.++.++|+..+. .. ...++++++||+|+|+|||++||+|+..+++.|++
T Consensus 70 ~~~vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~ 149 (209)
T PRK00129 70 KKLVIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDEETLEPVEYYVKLPEDIDERTVIVVDPMLATGGSAIAAIDLLKK 149 (209)
T ss_pred CeEEEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCCCCCCCEEEEeeCCCcCCCCEEEEECCcccchHHHHHHHHHHHH
Confidence 4689999999999999999999986788888888864321 11 22566789999999999999999999999999999
Q ss_pred cCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEecCCCCc
Q 022367 218 EGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVS 257 (298)
Q Consensus 218 ~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tnti~~~ 257 (298)
+|+++|.++|. ++++.+.+++.+++.+--++|.++...
T Consensus 150 ~G~~~I~~~~l--l~~~~gl~~l~~~~p~v~i~~~~iD~~ 187 (209)
T PRK00129 150 RGAKNIKVLCL--VAAPEGIKALEEAHPDVEIYTAAIDEK 187 (209)
T ss_pred cCCCEEEEEEE--ecCHHHHHHHHHHCCCcEEEEEeecCC
Confidence 99999999996 788899999998888888889888643
No 31
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.57 E-value=7.9e-14 Score=120.99 Aligned_cols=152 Identities=29% Similarity=0.382 Sum_probs=107.1
Q ss_pred HHHHHHHHHhCCCEEEEEcCCcccccCCCCcccccccchHHHHHHHHh----hccC-CCCeEEEeeCCChHHHHHHHHHH
Q 022367 88 KLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLAS----KAIS-SDDLVVVSPDVGGVARARAFAKK 162 (298)
Q Consensus 88 ~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~l~~----~~~~-~~~~viv~p~~Gg~~~a~~la~~ 162 (298)
+.+++++-..|+-+.-.+.|-|++.+.|| +....+...|.+++.+.. ...+ .+.++|++|..||+|.|..+|..
T Consensus 4 ~~~~~~l~~~~a~~fG~f~LsSG~~SpyY-~d~~~~~~~p~~~~~i~~~~a~~~~~~~~~d~v~G~a~ggiP~A~~~a~~ 82 (201)
T COG0461 4 RELAELLLEKGALKFGEFTLSSGRKSPYY-VDLRLFLTGPELLQLIAFALAEIIKEALEFDVVAGPALGGIPLAAATALA 82 (201)
T ss_pred HHHHHHHHHcCCeecCceeecCCCcCCeE-EecccccCCHHHHHHHHHHHHHHhhccCCCcEEEeccccchHHHHHHHHH
Confidence 46777776677755555557777766555 233334444444444432 2113 25679999999999999999999
Q ss_pred cCCCC-EEEEEeeecCCCeEEEEeeec-CCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCc--cHHH
Q 022367 163 LSDAP-LAIVDKRRQGHNVAEVMNLIG-DVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSP--PAIE 238 (298)
Q Consensus 163 L~~~~-~~~~~k~r~~~~~~~~~~~~g-~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~--~a~~ 238 (298)
|.+.+ +.+++|+.++++... ...| ..+|++|+||||++|||+++.++++.|+++|+..+.++| +++. ++.+
T Consensus 83 l~~~~~~~~~Rke~K~hG~~~--~ieG~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~---ivDR~~~~~~ 157 (201)
T COG0461 83 LAHLPPMAYVRKEAKDHGTGG--LIEGGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAV---IVDRQSGAKE 157 (201)
T ss_pred hccCCcEEEEeceeccCCCcc--eeEecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEEEEEE---EEecchhHHH
Confidence 93013 889999988777632 2333 348999999999999999999999999999999888887 4554 3455
Q ss_pred HhhcCCC
Q 022367 239 RLSSGLF 245 (298)
Q Consensus 239 ~l~~~~i 245 (298)
.+++.++
T Consensus 158 ~~~~~g~ 164 (201)
T COG0461 158 VLKEYGV 164 (201)
T ss_pred HHHhcCC
Confidence 5555444
No 32
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.57 E-value=2.9e-14 Score=122.99 Aligned_cols=101 Identities=21% Similarity=0.333 Sum_probs=80.7
Q ss_pred chHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCE--EEEEeeecCCCeE--EE---EeeecCCCCCEEEE
Q 022367 125 GQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPL--AIVDKRRQGHNVA--EV---MNLIGDVKGKVAVM 197 (298)
Q Consensus 125 ~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~--~~~~k~r~~~~~~--~~---~~~~g~v~gk~ViI 197 (298)
....+|++|.+.. ..+++++++++.||..+|..+++.|+ .|+ .++.+.+...... .. ....++++||+|+|
T Consensus 25 ~i~~la~~i~~~~-~~~~~viV~i~~gg~~~A~~La~~l~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~gk~VLI 102 (181)
T PRK09162 25 AIDRMADEITADL-ADENPLVLCVMGGGLVFTGQLLPRLD-FPLEFDYLHATRYRNETTGGELVWKVKPRESLKGRTVLV 102 (181)
T ss_pred HHHHHHHHHHHHc-CCCCeEEEEECCCcHHHHHHHHHHcC-CCcccCEEEEEecCCCccCCceeEecCCCCCCCCCEEEE
Confidence 4677888887753 45567999999999999999999998 664 4566655432211 11 12345789999999
Q ss_pred EeCccCchHHHHHHHHHHHHcCCCEEEEEE
Q 022367 198 VDDMIDTAGTISKGAALLHQEGAREVYACS 227 (298)
Q Consensus 198 VDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (298)
||||+|||.|+.++++.|+++||++|++++
T Consensus 103 VDDIidTG~Tl~~~~~~Lk~~Ga~~V~~av 132 (181)
T PRK09162 103 VDDILDEGHTLAAIRDRCLEMGAAEVYSAV 132 (181)
T ss_pred EccccCcHHHHHHHHHHHHhCCCCEEEEEE
Confidence 999999999999999999999999999998
No 33
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.57 E-value=3.9e-14 Score=121.69 Aligned_cols=108 Identities=18% Similarity=0.351 Sum_probs=85.1
Q ss_pred chHHHHHHHHhhccC-CCCeEEEeeCCChHHHHHHHHHHcCCCC--EEEEEeeecCCC-----eEEEE-eeecCCCCCEE
Q 022367 125 GQPVILDYLASKAIS-SDDLVVVSPDVGGVARARAFAKKLSDAP--LAIVDKRRQGHN-----VAEVM-NLIGDVKGKVA 195 (298)
Q Consensus 125 ~~~~la~~l~~~~~~-~~~~viv~p~~Gg~~~a~~la~~L~~~~--~~~~~k~r~~~~-----~~~~~-~~~g~v~gk~V 195 (298)
....+|++|.+.+.+ ..+++++++++||+.+|..+++.|+ .| +.++++.+.+.+ ...+. ....+++||+|
T Consensus 17 ~i~~lA~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~~~L~-~~~~v~~l~~ssY~~~~~~~~~v~i~~~~~~~v~gk~V 95 (178)
T PRK15423 17 RIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQ-VSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDV 95 (178)
T ss_pred HHHHHHHHHHHHhcccCCCeEEEEEecCChHHHHHHHHHhC-CCcceeEEEEEEecCCCcccCceEEecCCCCCCCCCEE
Confidence 457788888776422 3468999999999999999999997 66 567777765321 12222 23457899999
Q ss_pred EEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccH
Q 022367 196 VMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPA 236 (298)
Q Consensus 196 iIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a 236 (298)
+|||||+|||.|+.++.+.|++.|+++|.+++ ++.++.
T Consensus 96 LlVDDIiDTG~TL~~l~~~l~~~~~~~v~~av---L~~K~~ 133 (178)
T PRK15423 96 LIVEDIIDSGNTLSKVREILSLREPKSLAICT---LLDKPS 133 (178)
T ss_pred EEEeeecCchHHHHHHHHHHHhCCCCEEEEEE---EEECCC
Confidence 99999999999999999999999999999998 666654
No 34
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=99.56 E-value=5e-14 Score=120.65 Aligned_cols=100 Identities=23% Similarity=0.356 Sum_probs=79.5
Q ss_pred CCCeEEEeeCCChHHHHHHHHHHcCCCC-----EEEEEeeecCCCeEEEEeeecCC-CCCEEEEEeCccCchHHHHHHHH
Q 022367 140 SDDLVVVSPDVGGVARARAFAKKLSDAP-----LAIVDKRRQGHNVAEVMNLIGDV-KGKVAVMVDDMIDTAGTISKGAA 213 (298)
Q Consensus 140 ~~~~viv~p~~Gg~~~a~~la~~L~~~~-----~~~~~k~r~~~~~~~~~~~~g~v-~gk~ViIVDDii~TG~Tl~~a~~ 213 (298)
.+.++|++|+.||+++|..+|..++ .| +.+.+|+++..+... ...|.+ +|++|+||||+++||+|+.++++
T Consensus 53 ~~~d~Ivg~~~gG~~~A~~la~~l~-~~~~~~~~~~~rk~~k~~g~~~--~~~g~~~~g~~VlIVDDvi~TG~Tl~~a~~ 129 (173)
T TIGR00336 53 LEFDVIAGPALGGIPIATAVSVKLA-KPGGDIPLCFNRKEAKDHGEGG--NIEGELLEGDKVVVVEDVITTGTSILEAVE 129 (173)
T ss_pred CCCCEEEccccChHHHHHHHHHHhc-CcCCCceEEEEcCCcccCCCCC--ceecCCCCCCEEEEEeccccChHHHHHHHH
Confidence 3567999999999999999999998 88 888888776444321 133555 89999999999999999999999
Q ss_pred HHHHcCCCEEEEEEEeccCCccHHHHhhc
Q 022367 214 LLHQEGAREVYACSTHAVFSPPAIERLSS 242 (298)
Q Consensus 214 ~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~ 242 (298)
.|+++|++.+.++|.-..-..++.+++++
T Consensus 130 ~l~~~Ga~v~~~~vlvdr~~~~~~~~l~~ 158 (173)
T TIGR00336 130 IIQAAGGQVAGVIIAVDRQERSAGQEFEK 158 (173)
T ss_pred HHHHcCCeEEEEEEEEecCchhHHHHHHH
Confidence 99999999988888433322245777764
No 35
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=99.56 E-value=4.4e-14 Score=121.52 Aligned_cols=116 Identities=22% Similarity=0.377 Sum_probs=87.3
Q ss_pred cccCCCCcccccccchHHHHHHHHhhc---cCCCCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCCCe------E
Q 022367 111 QSMGYFDIPVDHVYGQPVILDYLASKA---ISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNV------A 181 (298)
Q Consensus 111 ~~~~~f~i~~~~l~~~~~la~~l~~~~---~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~------~ 181 (298)
+.++.|+++..++...+.+++.+.+.. +..+.+++++++.||+++|..+|+.++ .|+.+++|.+..... .
T Consensus 19 ~~~~~~~i~~~k~~~dp~l~~~~~~~La~~l~~~~d~Iv~v~~gGiplA~~lA~~L~-~p~~~~~k~~~~~~~~~~~~~~ 97 (178)
T PRK07322 19 RVGPDLAIALFVILGDTELTEAAAEALAKRLPTEVDVLVTPETKGIPLAHALSRRLG-KPYVVARKSRKPYMQDPIIQEV 97 (178)
T ss_pred EeCCCCEEEEEhhhCCHHHHHHHHHHHHHHcCCCCCEEEEeccCCHHHHHHHHHHHC-CCEEEEEEeCCCCCCCceEEEE
Confidence 345666778777777766666654431 222557999999999999999999998 899888776542110 0
Q ss_pred --------EEEee----ecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEE
Q 022367 182 --------EVMNL----IGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 227 (298)
Q Consensus 182 --------~~~~~----~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (298)
+.... ..+++||+|+||||+++||+|+.++++.|+++||+.|.+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~~~~ 155 (178)
T PRK07322 98 VSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVSTGGTLTALERLVERAGGQVVAKAA 155 (178)
T ss_pred EEEEeccceEEEecCccccccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEE
Confidence 01111 12468999999999999999999999999999999999888
No 36
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.56 E-value=2.3e-14 Score=140.13 Aligned_cols=146 Identities=23% Similarity=0.191 Sum_probs=106.9
Q ss_pred HHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEEE-EEeeec--------------CCCeEEEEeeecCCCC
Q 022367 128 VILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRQ--------------GHNVAEVMNLIGDVKG 192 (298)
Q Consensus 128 ~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~-~~k~r~--------------~~~~~~~~~~~g~v~g 192 (298)
.+.+.|.+.. ..+.++|++...+|.++|..+|+.++ +|+.. +.+.|. .....+.....++++|
T Consensus 276 ~~G~~La~~~-~~~~D~Vv~vPdsg~~~A~~~A~~lg-ip~~~~l~r~~~~~rtfi~~~q~~R~~~~~~k~~~~~~~v~g 353 (469)
T PRK05793 276 RAGRQLYKEY-PVDADIVIGVPDSGIPAAIGYAEASG-IPYGIGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVEG 353 (469)
T ss_pred HHHHHHHHhc-CCCCCEEEEcCccHHHHHHHHHHHhC-CCEeeeEEEeeeccccccChhHhhhhhhheEecccCccccCC
Confidence 4555555543 22334666666678999999999998 89854 222221 0011111123357899
Q ss_pred CEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEecCCCCc-c-cCCCCCeeEEec
Q 022367 193 KVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVS-E-RNYFPQLTILSV 270 (298)
Q Consensus 193 k~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tnti~~~-~-~~~~~ki~~isv 270 (298)
|+|+||||+|+||+|+.++++.|+++||++|+++++||.|..++...|..+..+++++.+--..+ . ......+..+|+
T Consensus 354 k~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~~~p~~~~p~~~gid~~~~~elia~~~~~~ei~~~~g~dsl~~ls~ 433 (469)
T PRK05793 354 KRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRVSSPPVKYPCYFGIDTPYRKELIGANMSVEEIREMIGADSLGYLSI 433 (469)
T ss_pred CEEEEEccccCchHHHHHHHHHHHHcCCCEEEEEEECCCcCcchhhhccCCChhhEEEcCCCHHHHHHHhCCCeEeccCH
Confidence 99999999999999999999999999999999999999999999999998889999987753211 1 124567888898
Q ss_pred hHHHH
Q 022367 271 ANLLG 275 (298)
Q Consensus 271 a~lla 275 (298)
..++.
T Consensus 434 ~~l~~ 438 (469)
T PRK05793 434 EGLLE 438 (469)
T ss_pred HHHHH
Confidence 76654
No 37
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=99.56 E-value=6.7e-14 Score=112.52 Aligned_cols=102 Identities=32% Similarity=0.426 Sum_probs=78.4
Q ss_pred chHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeec----------CCCeEEE-EeeecCCCCC
Q 022367 125 GQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQ----------GHNVAEV-MNLIGDVKGK 193 (298)
Q Consensus 125 ~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~----------~~~~~~~-~~~~g~v~gk 193 (298)
....++++|.+.. .+.+.++++..||+++|..+++.++ .|+.+..+... ....... ......++||
T Consensus 13 ~~~~la~~i~~~~--~~~~~ivgi~~~G~~~a~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk 89 (125)
T PF00156_consen 13 LAERLAEQIKESG--FDFDVIVGIPRGGIPLAAALARALG-IPLVFVRKRKSYYPGSDKTSREKNNQELFIIDKEDIKGK 89 (125)
T ss_dssp HHHHHHHHHHHHT--TTSSEEEEETTTTHHHHHHHHHHHT-HEEEEEEEEEEEESEEEEEEEETEEEEEEEEESSSGTTS
T ss_pred HHHHHHHHHHHhC--CCCCEEEeehhccHHHHHHHHHHhC-CCccceeeeecccccchhhhhccCceEEeecccccccce
Confidence 4566788887753 3455699999999999999999998 78766544221 1111111 1334578999
Q ss_pred EEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEe
Q 022367 194 VAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTH 229 (298)
Q Consensus 194 ~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH 229 (298)
+|+||||+++||+|+.++++.|+++|+++|.+++.|
T Consensus 90 ~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~~vl~ 125 (125)
T PF00156_consen 90 RVLIVDDVIDTGGTLKEAIELLKEAGAKVVGVAVLV 125 (125)
T ss_dssp EEEEEEEEESSSHHHHHHHHHHHHTTBSEEEEEEEE
T ss_pred eEEEEeeeEcccHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 999999999999999999999999999999999854
No 38
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=99.55 E-value=4.9e-14 Score=123.42 Aligned_cols=106 Identities=25% Similarity=0.352 Sum_probs=80.1
Q ss_pred CCCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCCCeEE----EE-eeecCCCCCEEEEEeCccCchHHHHHHHHH
Q 022367 140 SDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAE----VM-NLIGDVKGKVAVMVDDMIDTAGTISKGAAL 214 (298)
Q Consensus 140 ~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~~~----~~-~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~ 214 (298)
.+.++|++++.||+++|..+|..|+ .++.+.++.+..++... .+ ...++++||+|+||||++|||+|+.++++.
T Consensus 84 ~~~D~Ivgi~~gG~~~A~~lA~~L~-~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~gk~VlIVDDVitTG~Tl~~ai~~ 162 (200)
T PRK02277 84 EEVDVVVGIAKSGVPLATLVADELG-KDLAIYHPKKWDHGEGEKKTGSFSRNFASVEGKRCVIVDDVITSGTTMKETIEY 162 (200)
T ss_pred CCCCEEEeeccCCHHHHHHHHHHhC-CCcEEEecccccccccccccceeccccccCCcCEEEEEeeccCchHHHHHHHHH
Confidence 3457999999999999999999998 89877766553222111 11 112467999999999999999999999999
Q ss_pred HHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEE
Q 022367 215 LHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVI 249 (298)
Q Consensus 215 Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii 249 (298)
|+++|++.+.+++ ++++++.+.+....+..++
T Consensus 163 l~~~Ga~~v~v~v---lvdk~g~~~~~~vpv~sl~ 194 (200)
T PRK02277 163 LKEHGGKPVAVVV---LIDKSGIDEIDGVPVYSLI 194 (200)
T ss_pred HHHcCCEEEEEEE---EEECcchhhhcCCCeEEEE
Confidence 9999999999988 5565555555433444444
No 39
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=99.54 E-value=1.2e-13 Score=119.56 Aligned_cols=151 Identities=17% Similarity=0.138 Sum_probs=102.8
Q ss_pred EEEEEcCCcccccCCCCcccccccchHHH----HHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeec
Q 022367 101 RVLACDLHSGQSMGYFDIPVDHVYGQPVI----LDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQ 176 (298)
Q Consensus 101 ~ii~vdlHs~~~~~~f~i~~~~l~~~~~l----a~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~ 176 (298)
+++.--+|+.....|+++ ..+.. |.+ ++.+.+.. +.+.++|++|+.||+++|..+|..++ .|+.+++|.|.
T Consensus 11 ~~~~~~~~~~~~~~~~D~--~~~l~-P~~l~~~~~~l~~~~-~~~~D~Ivg~e~~Gi~lA~~vA~~l~-~p~~~~rk~~~ 85 (187)
T PRK12560 11 RVVNSGKALTTVNEFTDQ--LPALR-PKVLKETAKEIIKYI-DKDIDKIVTEEDKGAPLATPVSLLSG-KPLAMARWYPY 85 (187)
T ss_pred CccCCCCCCCcceeEEeC--hhhcC-HHHHHHHHHHHHHHh-CCCCCEEEEEccccHHHHHHHHHhhC-CCEEEeccCCC
Confidence 566666677665556552 22323 433 33444332 44567999999999999999999998 89999988764
Q ss_pred CCCe------------EE-EEeeecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHh-hc
Q 022367 177 GHNV------------AE-VMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERL-SS 242 (298)
Q Consensus 177 ~~~~------------~~-~~~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l-~~ 242 (298)
.... .+ .....+..+|++|+||||+++||+|+.++++.++++||..+.++|.-..-..++.+.+ ++
T Consensus 86 ~~~~~~~~~~~~~~~~~eg~~~~~~~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~vvd~~~~~g~~~l~~~ 165 (187)
T PRK12560 86 SLSELNYNVVEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVICVIEKTQNNGRKKLFTQ 165 (187)
T ss_pred cccceeEEeeeeeccceeeeeEccCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEEecccchHHHHhhc
Confidence 3211 01 1122345689999999999999999999999999999999888885433323456776 32
Q ss_pred C--CCCEEEEecCCCC
Q 022367 243 G--LFQEVIITNTIPV 256 (298)
Q Consensus 243 ~--~i~~ii~tnti~~ 256 (298)
. .+..++..+..+.
T Consensus 166 ~gv~v~sl~~~~~~~~ 181 (187)
T PRK12560 166 TGINVKSLVKIDVKPH 181 (187)
T ss_pred cCCcEEEEEEEEEecC
Confidence 3 3456665555543
No 40
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.53 E-value=1.3e-13 Score=115.99 Aligned_cols=124 Identities=19% Similarity=0.319 Sum_probs=94.1
Q ss_pred chHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCC--EEEEEeeecCCC-----eEEEE-eeecCCCCCEEE
Q 022367 125 GQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAP--LAIVDKRRQGHN-----VAEVM-NLIGDVKGKVAV 196 (298)
Q Consensus 125 ~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~--~~~~~k~r~~~~-----~~~~~-~~~g~v~gk~Vi 196 (298)
...++|++|.+.+ .++++++|+..+|+++|+..+.++++ .| +.|+...+.+.+ ..++. .+..+++||+|+
T Consensus 20 ri~ela~~I~~~y-~g~~~~vv~iLkGs~~F~~dL~r~i~-~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdVL 97 (178)
T COG0634 20 RIKELAAQITEDY-GGKDPLVVGVLKGSFPFMADLIRAID-FPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDVL 97 (178)
T ss_pred HHHHHHHHHHHhh-CCCceEEEEEcccchhhHHHHHHhcC-CCceeEEEEEeccCCCcccCCceEEecccccCCCCCeEE
Confidence 4577888988875 66889999999999999999999997 44 467766554322 22232 456789999999
Q ss_pred EEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEecCCCC
Q 022367 197 MVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPV 256 (298)
Q Consensus 197 IVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tnti~~ 256 (298)
|||||+|||.|+..+.+.|+.+||+++..++ ++.++..... .++-=++-=.+|.
T Consensus 98 iVeDIiDsG~TLs~i~~~l~~r~a~sv~i~t---LldK~~~r~~---~i~~DyvGf~vPd 151 (178)
T COG0634 98 IVEDIIDSGLTLSKVRDLLKERGAKSVRIAT---LLDKPERRKV---DIEADYVGFEVPD 151 (178)
T ss_pred EEecccccChhHHHHHHHHHhCCCCeEEEEE---EeeCcccccC---CCCcceEeeecCC
Confidence 9999999999999999999999999999998 6766543322 2333344444554
No 41
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=99.52 E-value=1.1e-13 Score=120.14 Aligned_cols=110 Identities=26% Similarity=0.366 Sum_probs=85.2
Q ss_pred chHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCC---CE--EEEEeeecCCC-----eEEEE--eeecCCCC
Q 022367 125 GQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDA---PL--AIVDKRRQGHN-----VAEVM--NLIGDVKG 192 (298)
Q Consensus 125 ~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~---~~--~~~~k~r~~~~-----~~~~~--~~~g~v~g 192 (298)
....+|++|.+.+ ...+++++++..||+++|..+++.|+ . ++ .+++..+.+.+ ...+. ....+++|
T Consensus 20 ~i~~lA~~I~~~~-~~~~~vivgi~~Gg~~fa~~L~~~L~-~~~~~~~i~fi~~~sy~~~~~~~g~~~i~~~~~~~~v~g 97 (189)
T PLN02238 20 RVAELAAQIASDY-AGKSPVVLGVATGAFMFLADLVRAIQ-PLPRGLTVDFIRASSYGGGTESSGVAKVSGADLKIDVKG 97 (189)
T ss_pred HHHHHHHHHHHHc-CCCCcEEEEEccCCHHHHHHHHHHhC-ccCCCeEEEEEEeeecCCCccccCceeEecCCCCCCCCC
Confidence 3566888887763 44668999999999999999999997 5 54 46665554321 12221 23357899
Q ss_pred CEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHH
Q 022367 193 KVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIER 239 (298)
Q Consensus 193 k~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~ 239 (298)
|+|+|||||+|||.|+.++++.|++.|+++|.++| ++.++....
T Consensus 98 k~VliVDDIidTG~Tl~~~~~~l~~~g~~~v~~av---L~dK~~~r~ 141 (189)
T PLN02238 98 KHVLLVEDIVDTGNTLSALVAHLEAKGAASVSVCA---LLDKRARRK 141 (189)
T ss_pred CEEEEEecccchHHHHHHHHHHHHhCCCCEEEEEE---EEECCcccc
Confidence 99999999999999999999999999999999998 677765443
No 42
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=99.51 E-value=2.6e-13 Score=132.19 Aligned_cols=150 Identities=18% Similarity=0.212 Sum_probs=104.8
Q ss_pred HHHHHHHHhCCCEEEEEcCCcccccCCCCcccccccchHHHHHH----HHhhccCCCCeEEEeeCCChHHHHHHHHHHcC
Q 022367 89 LVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDY----LASKAISSDDLVVVSPDVGGVARARAFAKKLS 164 (298)
Q Consensus 89 ~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~----l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~ 164 (298)
.++++|-..|+=+.-.+-|-|++.+.+| +....+...|.+.+. +.+...+.+.+.|++|..||+++|..+|..++
T Consensus 289 ~l~~~l~~~~al~fG~F~L~SG~~S~~Y-iD~~~lls~P~~l~~v~~~la~~l~~~~~D~I~Gia~gGiPlAt~lA~~lg 367 (477)
T PRK05500 289 DLILQLYDIGCLLFGEYVQASGATFSYY-IDLRKIISNPQLFHQVLSAYAEILKNLTFDRIAGIPYGSLPTATGLALHLH 367 (477)
T ss_pred HHHHHHHHCCCeEeCcEEECCcCcCCEE-EEChhhhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhC
Confidence 3555555556544444555566555554 334444444444333 33332233456999999999999999999998
Q ss_pred CCCEEEEEeeecCCCeEEEEeeecCC-CCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcC
Q 022367 165 DAPLAIVDKRRQGHNVAEVMNLIGDV-KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSG 243 (298)
Q Consensus 165 ~~~~~~~~k~r~~~~~~~~~~~~g~v-~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~ 243 (298)
.|+.+++|+.+.++... ...|.+ +|++|+||||++|||+|+.++++.|+++|++.+.+++.-..- .++.++|++.
T Consensus 368 -~p~v~vRKe~K~~G~~~--~ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V~~v~vlVDR~-~g~~~~L~~~ 443 (477)
T PRK05500 368 -HPMIFPRKEVKAHGTRR--LIEGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVFIDHE-QGVKDKLQSH 443 (477)
T ss_pred -CCEEEEecCcCccCCCc--eEecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECC-cchHHHHHhc
Confidence 89999999987666543 246666 799999999999999999999999999999988887743321 2456666543
No 43
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=99.50 E-value=4.8e-13 Score=114.12 Aligned_cols=101 Identities=21% Similarity=0.231 Sum_probs=77.2
Q ss_pred CCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCCCe-----------EEEEeee--cCCCCCEEEEEeCccCchHH
Q 022367 141 DDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNV-----------AEVMNLI--GDVKGKVAVMVDDMIDTAGT 207 (298)
Q Consensus 141 ~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~-----------~~~~~~~--g~v~gk~ViIVDDii~TG~T 207 (298)
+.+++++|+.+|+.+|..+++.|+ .|+..++|.+..... ...+... ...+||+|+||||++|||+|
T Consensus 46 ~~d~ivgi~~~G~~~A~~la~~L~-~~~~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDIitTG~T 124 (169)
T TIGR01090 46 NIDYIVGPEARGFIFGAALAYKLG-VGFVPVRKPGKLPGETISASYDLEYGKDQLEIHKDAIKPGQRVLIVDDLLATGGT 124 (169)
T ss_pred CCCEEEeehhccHHHHHHHHHHHC-CCEEEEEeCCCCCCceeeeEEeeccCceEEEEehhhcCCcCEEEEEeccccchHH
Confidence 457999999999999999999998 898877765431110 0111111 23589999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhc
Q 022367 208 ISKGAALLHQEGAREVYACSTHAVFSPPAIERLSS 242 (298)
Q Consensus 208 l~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~ 242 (298)
+.++++.|+++|++.+.+++.-..-..++.+.+.+
T Consensus 125 l~~a~~~L~~~Ga~~v~~~~l~~~~~~~g~~~i~~ 159 (169)
T TIGR01090 125 AEATDELIRKLGGEVVEAAFLIELKDLNGRAKLEP 159 (169)
T ss_pred HHHHHHHHHHcCCEEEEEEEEEEccccChHHHhcc
Confidence 99999999999999988888654434456777765
No 44
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=99.48 E-value=5.2e-13 Score=117.54 Aligned_cols=114 Identities=23% Similarity=0.317 Sum_probs=95.8
Q ss_pred CCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCCCe--EE-EEeeecCCCCCEEEEEeCccCchHHHHHHHHHHHH
Q 022367 141 DDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNV--AE-VMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQ 217 (298)
Q Consensus 141 ~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~--~~-~~~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~ 217 (298)
++.++|++.+||++++..+++.++.+++.++.++|+.... .. ...++.+++||+|+|+|||++||+|+..+++.|++
T Consensus 68 ~~i~~V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~ 147 (207)
T TIGR01091 68 KKIVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNEETLKPVPYYSKLPEDIDERTVIVLDPMLATGGTMIAALDLLKK 147 (207)
T ss_pred CcEEEEEEeCCcHHHHHHHHHhCCcCceeEEEEEeCCCCCCCEEEEecCCCCCCCCEEEEECCCccchHHHHHHHHHHHH
Confidence 4689999999999999999999986788888888864321 11 22566789999999999999999999999999999
Q ss_pred cCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEecCCCC
Q 022367 218 EGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPV 256 (298)
Q Consensus 218 ~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tnti~~ 256 (298)
+|+++|.+++. +.++.+.+++.+...+--++|-++..
T Consensus 148 ~G~~~I~v~~l--l~~~~gl~~l~~~~p~v~i~~~~id~ 184 (207)
T TIGR01091 148 RGAKKIKVLSI--VAAPEGIEAVEKAHPDVDIYTAAIDE 184 (207)
T ss_pred cCCCEEEEEEE--ecCHHHHHHHHHHCCCCEEEEEEECC
Confidence 99999999985 78889999998776676667777754
No 45
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.47 E-value=3.1e-13 Score=116.52 Aligned_cols=147 Identities=24% Similarity=0.295 Sum_probs=114.2
Q ss_pred ccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEEEE--EeeecC------------CC-e-------
Q 022367 123 VYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIV--DKRRQG------------HN-V------- 180 (298)
Q Consensus 123 l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~--~k~r~~------------~~-~------- 180 (298)
-++...|++.|.... +.++.++.+...||++.|.++|+.|| +|+..+ +|---. .+ .
T Consensus 8 ~dAGr~La~~l~~~~-~~~~~iVlaLpRGGvpva~evA~~lg-a~ldvliVrKiG~P~n~E~aiGAvae~g~~v~n~~~~ 85 (220)
T COG1926 8 TDAGRKLAQELAALR-DLKDVIVLALPRGGVPVAFEVAQALG-APLDVLIVRKIGAPGNPELAIGAVAEGGDVVLNYDVV 85 (220)
T ss_pred HHHHHHHHHHHHhhc-cCCCcEEEEecCCCchHHHHHHHHhC-CCeeEEEEeecCCCCCchhceeeeccCCcEecchhhh
Confidence 347788999987753 35678999999999999999999998 888554 442110 00 0
Q ss_pred ------------------EEE---------EeeecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCC
Q 022367 181 ------------------AEV---------MNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFS 233 (298)
Q Consensus 181 ------------------~~~---------~~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~ 233 (298)
.+. .+..-+++||+||||||-+.||.|+..+++.++++|++.|.+++ |+++
T Consensus 86 ~~~~i~~~~i~~~~~~e~~El~rrr~~yr~~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAV--PV~p 163 (220)
T COG1926 86 RSLGIDDAYIEAAAARERKELLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAV--PVAP 163 (220)
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEc--ccCC
Confidence 000 01223689999999999999999999999999999999999998 8999
Q ss_pred ccHHHHhhcCCCCEEEEecCCCCcc--cCCCCCeeEEechHHH
Q 022367 234 PPAIERLSSGLFQEVIITNTIPVSE--RNYFPQLTILSVANLL 274 (298)
Q Consensus 234 ~~a~~~l~~~~i~~ii~tnti~~~~--~~~~~ki~~isva~ll 274 (298)
.++.+.|+. ..|+++|.++-.... ..+|.+++.+|-++..
T Consensus 164 ~~a~~~l~s-~~D~vvc~~~P~~F~AVg~~Y~dF~q~sdeEV~ 205 (220)
T COG1926 164 EDAAAELES-EADEVVCLYMPAPFEAVGEFYRDFRQVSDEEVR 205 (220)
T ss_pred HHHHHHHHh-hcCeEEEEcCCccHHHHHHHHHHHhhcCHHHHH
Confidence 999999985 789999998876554 2467788888876654
No 46
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=99.47 E-value=1.6e-12 Score=112.77 Aligned_cols=127 Identities=13% Similarity=0.095 Sum_probs=90.5
Q ss_pred HHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCCC--e-E------------EEEeeec-CC-C
Q 022367 129 ILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHN--V-A------------EVMNLIG-DV-K 191 (298)
Q Consensus 129 la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~--~-~------------~~~~~~g-~v-~ 191 (298)
+++.+.+...+.+.++|++++.+|+++|..+|.+|+ .|+.+++|..+... . . ..+.+.. .+ +
T Consensus 38 i~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg-~p~v~vRK~~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~i~~ 116 (189)
T PRK09219 38 IGKEFARRFKDEGITKILTIEASGIAPAVMAALALG-VPVVFAKKKKSLTLTDDVYTATVYSFTKQVTSTVSVSKKFLSE 116 (189)
T ss_pred HHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHC-CCEEEEEECCCCCCCCceEEEEEeeeccCceEEEEEEhhhCCC
Confidence 334443332233456999999999999999999998 99999998765421 1 0 1112222 33 7
Q ss_pred CCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCC--CCEEEEecCCCC
Q 022367 192 GKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGL--FQEVIITNTIPV 256 (298)
Q Consensus 192 gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~--i~~ii~tnti~~ 256 (298)
|++|+||||+++||+|+.++++.++++|++.+.+++.-..-..++.+++.+.+ +..++....++.
T Consensus 117 G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvgv~~lvd~~~~~g~~~l~~~g~~~~sl~~~~~~~~ 183 (189)
T PRK09219 117 GDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIGIVIEKSFQDGRKLLEEKGYRVESLARIASLEN 183 (189)
T ss_pred CCEEEEEeehhhcChHHHHHHHHHHHCCCEEEEEEEEEEccCccHHHHHHhcCCcEEEEEEeeeccC
Confidence 99999999999999999999999999999988888743222224677776544 556766666654
No 47
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=99.47 E-value=7.4e-13 Score=113.67 Aligned_cols=104 Identities=24% Similarity=0.305 Sum_probs=78.0
Q ss_pred chHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcC---CCC--EEEEEee--ecCC---CeE-EE--EeeecCCC
Q 022367 125 GQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLS---DAP--LAIVDKR--RQGH---NVA-EV--MNLIGDVK 191 (298)
Q Consensus 125 ~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~---~~~--~~~~~k~--r~~~---~~~-~~--~~~~g~v~ 191 (298)
....+|+++.+.+.+.+++++++++.||+.+|..+++.|+ +.+ +.+++.. |.+. +.. .. ..+.++++
T Consensus 15 ~i~~la~~i~~~~~~~~~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~l~~~v~ 94 (176)
T PRK05205 15 ALTRIAHEIIERNKGLDNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDITLYRDDLTKKGLHPQVKPTDIPFDIE 94 (176)
T ss_pred HHHHHHHHHHHHcCCCCCeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEEEeecCccccCcccccccccCCCCCC
Confidence 4566788887653233678999999999999999999994 133 5565443 3221 111 11 23456899
Q ss_pred CCEEEEEeCccCchHHHHHHHHHHHHcC-CCEEEEEEE
Q 022367 192 GKVAVMVDDMIDTAGTISKGAALLHQEG-AREVYACST 228 (298)
Q Consensus 192 gk~ViIVDDii~TG~Tl~~a~~~Lk~~G-a~~V~~~~t 228 (298)
||+|+|||||+|||+|+.++++.|++.| +++|.+++.
T Consensus 95 gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~~~v~~avL 132 (176)
T PRK05205 95 GKRVILVDDVLYTGRTIRAALDALFDYGRPARVQLAVL 132 (176)
T ss_pred CCEEEEEecccCcHHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 9999999999999999999999999999 788988883
No 48
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=99.46 E-value=1.6e-12 Score=112.89 Aligned_cols=128 Identities=13% Similarity=0.135 Sum_probs=91.7
Q ss_pred HHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCCC-----e----------EEEEeeecC-C
Q 022367 127 PVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHN-----V----------AEVMNLIGD-V 190 (298)
Q Consensus 127 ~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~-----~----------~~~~~~~g~-v 190 (298)
..+++.+.+...+.+.++|++++.+|+++|..+|..|+ +|+.+++|..+... . ...+.+.++ +
T Consensus 36 ~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg-~p~v~vRK~~k~~~~~~~~~~~~~s~~~~~~~~l~i~~~~l 114 (191)
T TIGR01744 36 QEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLG-VPVVFARKKKPLTLTDNLLTASVHSFTKQTTSTVAVSGEFL 114 (191)
T ss_pred HHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHC-CCEEEEEeCCCCCCCCcceEEEEEEeecCccEEEEEEHHhC
Confidence 34444454443233456899999999999999999998 99999999864332 1 011123342 4
Q ss_pred -CCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcC--CCCEEEEecCCC
Q 022367 191 -KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSG--LFQEVIITNTIP 255 (298)
Q Consensus 191 -~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~--~i~~ii~tnti~ 255 (298)
+|++|+||||+++||+|+.++++.++++||..+.++|.-..-..++.++|++. .+..++.-.++.
T Consensus 115 ~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~lvd~~~~~g~~~l~~~gvpv~sL~~~~~l~ 182 (191)
T TIGR01744 115 SDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEKSFQNGRQELVELGYRVESLARIQSLE 182 (191)
T ss_pred CCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEEEEecCccHHHHHHhcCCcEEEEEEEeeEe
Confidence 79999999999999999999999999999998888884333223467778654 345566555554
No 49
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.41 E-value=2.8e-12 Score=112.81 Aligned_cols=110 Identities=14% Similarity=0.210 Sum_probs=83.5
Q ss_pred chHHHHHHHHhhccC-----CCCeEEEeeCCChHHHHHHHHHHcC--CCC--EEEEEeeecCC-----CeEEEE-eeecC
Q 022367 125 GQPVILDYLASKAIS-----SDDLVVVSPDVGGVARARAFAKKLS--DAP--LAIVDKRRQGH-----NVAEVM-NLIGD 189 (298)
Q Consensus 125 ~~~~la~~l~~~~~~-----~~~~viv~p~~Gg~~~a~~la~~L~--~~~--~~~~~k~r~~~-----~~~~~~-~~~g~ 189 (298)
....||++|.+.+.+ .++++++++.+||+.+|..+++.|+ ..+ +.+++-.+.+. +...+. .+..+
T Consensus 36 ~i~~LA~~I~~~~~~~~~~~~~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdfi~vssY~~~~~s~g~~~i~~~~~~~ 115 (211)
T PTZ00271 36 ATAKCAKKIAEDYRSFKLTTENPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICASSYGTGVETSGQVRMLLDVRDS 115 (211)
T ss_pred HHHHHHHHHHHHhhhccccCCCCeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEEEEEEecCCCCcccCceEEecCCCCC
Confidence 456788888776421 3467899999999999999999995 134 55665444321 112222 33457
Q ss_pred CCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHH
Q 022367 190 VKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAI 237 (298)
Q Consensus 190 v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~ 237 (298)
++||+|||||||+|||.|+.++.+.|++.|+++|.+++ ++.++..
T Consensus 116 i~gk~VLIVDDIvDTG~TL~~v~~~l~~~~p~svk~av---L~dK~~~ 160 (211)
T PTZ00271 116 VENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVV---LLDKPSG 160 (211)
T ss_pred CCCCEEEEEecccCCHHHHHHHHHHHHhcCCCEEEEEE---EEEcccC
Confidence 99999999999999999999999999999999999998 6666443
No 50
>PRK11595 DNA utilization protein GntX; Provisional
Probab=99.40 E-value=1.8e-13 Score=122.18 Aligned_cols=156 Identities=23% Similarity=0.276 Sum_probs=98.0
Q ss_pred HHHHHhcC--CCeEEEEeeccCcccc--cccccCCCchHHHHHHHHHHH-----------hCCCEEEEEcCCccc-ccCC
Q 022367 52 IDACRRAS--AKNITAVIPYFGYARA--DRKTQGRESIAAKLVANLITE-----------AGANRVLACDLHSGQ-SMGY 115 (298)
Q Consensus 52 ~~a~r~~~--a~~i~~viPY~~YsRq--dr~~~~~~~~~a~~va~ll~~-----------~g~d~ii~vdlHs~~-~~~~ 115 (298)
...|.+.. ..+..++.+|-+..|+ .+.+..|..-.++.+++++.. ...|.|++|++|..+ .++.
T Consensus 51 C~~C~~~~~~~~~~~a~~~Y~g~~r~lI~~~Ky~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~d~ivpVPl~~~r~~~RG 130 (227)
T PRK11595 51 CGRCLQKPPPWQRLVFVSDYAPPLSGLIHQLKFSRRSELASVLARLLLLEWLQARRSTGLQKPDRIISVPLHQRRHWRRG 130 (227)
T ss_pred cHHHHcCCCchhheeeeeecccHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEecCCCHHHHHHCC
Confidence 44554422 2466778888887776 233345666666777776632 146889999999986 5566
Q ss_pred CCcccccccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCCCeEEEEeeecCCCCCEE
Q 022367 116 FDIPVDHVYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVA 195 (298)
Q Consensus 116 f~i~~~~l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~~~~~~~~g~v~gk~V 195 (298)
|| +..++|+.+.+.. +.. ++.+.+.+.+..+.+.+ .. .++|. .+....+.+.++++|++|
T Consensus 131 fn-------q~~~la~~la~~~-~~~------~~~~~l~r~~~~~~q~~-l~----~~~R~-~n~~~~f~~~~~~~~~~v 190 (227)
T PRK11595 131 FN-------QSDLLCRPLARWL-GCD------YDSEALTRTRATATQHF-LS----ARLRK-RNLKNAFRLELPVQGQHM 190 (227)
T ss_pred CC-------HHHHHHHHHHHHH-CCC------CcccceEEecCCCCccc-CC----HHHHh-hhhhhhhccCCCCCCCEE
Confidence 87 6777888776643 111 11111222111111111 10 11221 111112334567899999
Q ss_pred EEEeCccCchHHHHHHHHHHHHcCCCEEEEEE
Q 022367 196 VMVDDMIDTAGTISKGAALLHQEGAREVYACS 227 (298)
Q Consensus 196 iIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (298)
+|||||+|||.|+.++++.|+++|+++|++++
T Consensus 191 llvDDv~tTG~Tl~~~~~~L~~~g~~~V~~~~ 222 (227)
T PRK11595 191 AIVDDVVTTGSTVAEIAQLLLRNGAASVQVWC 222 (227)
T ss_pred EEEeeeecchHHHHHHHHHHHHcCCcEEEEEE
Confidence 99999999999999999999999999999988
No 51
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.38 E-value=4.8e-12 Score=113.25 Aligned_cols=107 Identities=17% Similarity=0.203 Sum_probs=81.6
Q ss_pred chHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCC----------CCE---EEEEeeecCC----CeEEEE-ee
Q 022367 125 GQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSD----------APL---AIVDKRRQGH----NVAEVM-NL 186 (298)
Q Consensus 125 ~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~----------~~~---~~~~k~r~~~----~~~~~~-~~ 186 (298)
....+|++|.+.+ ..++++++++.+||++++..+.+.|.. .+. .+++..+... +...+. ..
T Consensus 66 rI~~LA~~I~~dy-~~~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~~~~~~~dfi~vsSY~~~~s~g~v~i~~~~ 144 (241)
T PTZ00149 66 RVEKLAYDIKQVY-GNEELHILCILKGSRGFFSALVDYLNRIHNYSSTESPKPPYQEHYVRVKSYCNDESTGKLEIVSDD 144 (241)
T ss_pred HHHHHHHHHHHHc-CCCCeEEEEECCCCHHHHHHHHHHHhhhhhccccccCcccccccEEEEEEccCCCcCCceEEeccc
Confidence 4567888887764 567899999999999999999998851 123 5555443211 122222 22
Q ss_pred ecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCcc
Q 022367 187 IGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPP 235 (298)
Q Consensus 187 ~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~ 235 (298)
..+++||+|+|||||+|||.|+.++.+.|++.|+++|.++| ++.++
T Consensus 145 ~~~l~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~~~V~va~---L~~K~ 190 (241)
T PTZ00149 145 LSCLKDKHVLIVEDIIDTGNTLVKFCEYLKKFEPKTIRIAT---LFEKR 190 (241)
T ss_pred ccccCCCEEEEEEeEeChHHHHHHHHHHHHhcCCCEEEEEE---EEecC
Confidence 34789999999999999999999999999999999999998 55554
No 52
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=99.37 E-value=6.8e-11 Score=107.36 Aligned_cols=192 Identities=18% Similarity=0.199 Sum_probs=117.1
Q ss_pred HHHHHHHHHhcCCCeEEEE------eeccCcccccccccCCCchHHHHHHHHHHHhCCCEEEEEcCCcccccCCCCcccc
Q 022367 48 LLVMIDACRRASAKNITAV------IPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVD 121 (298)
Q Consensus 48 ll~~~~a~r~~~a~~i~~v------iPY~~YsRqdr~~~~~~~~~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~ 121 (298)
|.++-+++...|.-++.-+ +-|.|+...+... .+ ...+++.|+..+ +++.= |--....++..|.
T Consensus 42 ~~i~~~~~~~~~~g~~~t~~ga~ggv~~~p~~~~~~~~----~~-~~~l~~~l~~~~--rilpg--g~~~~s~ll~~P~- 111 (268)
T TIGR01743 42 IVIIKETFEKFGIGKLLTVPGAAGGVKYIPKMSQAEAE----EF-VEELCQSLSEPE--RILPG--GYLYLTDILGKPS- 111 (268)
T ss_pred HHHHHHHHHhcCCceEEEeCCCCCCeEEEeCCCHHHHH----HH-HHHHHHHHHHCC--CcccC--CeEEechhhcCHH-
Confidence 4667778887766555443 4455554443211 11 335566666543 33320 0000111111111
Q ss_pred cccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecC-CC-------------eEEEEeee
Q 022367 122 HVYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQG-HN-------------VAEVMNLI 187 (298)
Q Consensus 122 ~l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~-~~-------------~~~~~~~~ 187 (298)
....+++.+.+...+.+.++|+++..+|+++|..+|..|+ +|+.+++|..+. .+ ..+.+.+.
T Consensus 112 ---~l~~ig~~la~~~~~~~iD~VvgvetkGIpLA~avA~~L~-vp~vivRK~~K~t~g~~vs~nY~sgs~~~ie~m~l~ 187 (268)
T TIGR01743 112 ---ILSKIGKILASVFAEREIDAVMTVATKGIPLAYAVASVLN-VPLVIVRKDSKVTEGSTVSINYVSGSSNRIQTMSLA 187 (268)
T ss_pred ---HHHHHHHHHHHHhcCCCCCEEEEEccchHHHHHHHHHHHC-CCEEEEEECCCCCCCCcEEEEEEcccCccceEEEEe
Confidence 1223333343332233457999999999999999999998 999999987653 11 11122222
Q ss_pred -cCC-CCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEecCCCC
Q 022367 188 -GDV-KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPV 256 (298)
Q Consensus 188 -g~v-~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tnti~~ 256 (298)
..+ +|++|+||||+++||+|+.++++.++++|+..+.+++.-.. .+..+++.. .+..++..+.+..
T Consensus 188 k~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vlve~--~~~~~~l~~-~~~SL~~~~~~~~ 255 (268)
T TIGR01743 188 KRSLKTGSKVLIIDDFMKAGGTINGMINLLDEFDAEVAGIGVLIDN--EGVDEKLVD-DYMSLLTLSNINE 255 (268)
T ss_pred hhhCCCcCEEEEEeeecccCHHHHHHHHHHHHCCCEEEEEEEEEEC--CCChHHcCC-CceEEEEEeeccc
Confidence 234 79999999999999999999999999999998888874222 233466644 5677777777654
No 53
>PRK06031 phosphoribosyltransferase; Provisional
Probab=99.32 E-value=4.8e-11 Score=106.65 Aligned_cols=129 Identities=23% Similarity=0.225 Sum_probs=88.4
Q ss_pred HHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCC---CCEEEEEeeecCC------------CeEEEEeee----c
Q 022367 128 VILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSD---APLAIVDKRRQGH------------NVAEVMNLI----G 188 (298)
Q Consensus 128 ~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~---~~~~~~~k~r~~~------------~~~~~~~~~----g 188 (298)
.+++.|.++....+.++|+++..+|+++|..+|+.|+. +|+.+.+|..... +....+.+. .
T Consensus 71 ~la~~La~~~~~~~~DvIVgv~~~Gi~lA~~lA~~Lg~~~~vpl~~~rK~~~~~~l~~~~~sitt~~~~~~~~l~~~~~~ 150 (233)
T PRK06031 71 ALAEHLAEKARAFDPDVVAGLPTLGLTLAAAVARKLGHTRYVPLGTSRKFWYRDELSVPLSSITTPDQGKRLYIDPRMLP 150 (233)
T ss_pred HHHHHHHHHcccCCCcEEEEeccCCHHHHHHHHHHHCCCCceEEEEccccccccccccceeeeeccCccceEEecccccc
Confidence 45566655542335679999999999999999999982 2333333321100 011111111 2
Q ss_pred CCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCC---CCEEEEecCCCCc
Q 022367 189 DVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGL---FQEVIITNTIPVS 257 (298)
Q Consensus 189 ~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~---i~~ii~tnti~~~ 257 (298)
.++|++|+||||+++||+|+.++++.|+++|++.+.+++.- .-..+..+++.+.+ .+.++..-.+|..
T Consensus 151 ~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga~Vvgv~v~v-~~g~~~~~~l~~~~~~~~~~~~~~~~~p~~ 221 (233)
T PRK06031 151 LLEGRRVALIDDVISSGASIVAGLRLLAACGIEPAGIGAAM-LQSERWRESLAAAGPQWPARVVGVFATPIL 221 (233)
T ss_pred cCCCCEEEEEEeEccccHHHHHHHHHHHHcCCeEEEEEEEE-EccccHHHHHHhcCCCcccceEEEeecccc
Confidence 36899999999999999999999999999999887776632 22346778887655 4777777777764
No 54
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=99.32 E-value=4e-11 Score=107.63 Aligned_cols=111 Identities=25% Similarity=0.239 Sum_probs=79.5
Q ss_pred HHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCC-C------------eEEEEeee-cC-CCCC
Q 022367 129 ILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGH-N------------VAEVMNLI-GD-VKGK 193 (298)
Q Consensus 129 la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~-~------------~~~~~~~~-g~-v~gk 193 (298)
+++.+.+...+.+.++|++++.+|+++|..+|..|+ .|+.+++|.++.. + ....+.+. .. .+|+
T Consensus 99 v~~~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~-~p~vi~Rk~~~~~~~~~v~~y~s~s~~~~~~~~l~~~~l~~G~ 177 (238)
T PRK08558 99 IAPVVAERFMGLRVDVVLTAATDGIPLAVAIASYFG-ADLVYAKKSKETGVEKFYEEYQRLASGIEVTLYLPASALKKGD 177 (238)
T ss_pred HHHHHHHHccCCCCCEEEEECcccHHHHHHHHHHHC-cCEEEEEecCCCCCcceEEEeeccCCCceeEEEecHHHcCCcC
Confidence 344444443233457999999999999999999998 9999988765311 0 11111222 23 4899
Q ss_pred EEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhh
Q 022367 194 VAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLS 241 (298)
Q Consensus 194 ~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~ 241 (298)
+|+||||+++||+|+..+++.++++||+.+.+++.-..- ..+.+++.
T Consensus 178 rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~-~~~~~~l~ 224 (238)
T PRK08558 178 RVLIVDDIIRSGETQRALLDLARQAGADVVGVFFLIAVG-EVGIDRAR 224 (238)
T ss_pred EEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEEEecC-chHHHHHh
Confidence 999999999999999999999999999998888843321 23356654
No 55
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=99.32 E-value=5.5e-12 Score=105.45 Aligned_cols=99 Identities=29% Similarity=0.397 Sum_probs=75.4
Q ss_pred CCCCeEEEeeCCChHHHHHHHHHHcCCCCEEEE--EeeecCCCeE--E-EEeeecCCCCCEEEEEeCccCchHHHHHHHH
Q 022367 139 SSDDLVVVSPDVGGVARARAFAKKLSDAPLAIV--DKRRQGHNVA--E-VMNLIGDVKGKVAVMVDDMIDTAGTISKGAA 213 (298)
Q Consensus 139 ~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~--~k~r~~~~~~--~-~~~~~g~v~gk~ViIVDDii~TG~Tl~~a~~ 213 (298)
..+-+++|++...|+|+|..+|..|+ ..+.+. +|.|+..+.. . +...-+.|+||+|+||||+++||.|+.++++
T Consensus 84 ~~evDvVvGIa~sGvPlAtmvA~elg-~elaiY~PrK~~~de~~~~~G~iS~NFa~V~gK~cvIVDDvittG~Ti~E~Ie 162 (203)
T COG0856 84 SFEVDVVVGIAISGVPLATMVAYELG-KELAIYHPRKHRKDEGAGKGGSISSNFASVEGKRCVIVDDVITTGSTIKETIE 162 (203)
T ss_pred cceeEEEEEEeecCccHHHHHHHHhC-CceEEEecccccccccCCcCceeecccccccCceEEEEecccccChhHHHHHH
Confidence 34567999999999999999999998 787654 3555432211 1 1123357899999999999999999999999
Q ss_pred HHHHcCCCEEEEEEEeccCCccHHHHhh
Q 022367 214 LLHQEGAREVYACSTHAVFSPPAIERLS 241 (298)
Q Consensus 214 ~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~ 241 (298)
.|++.|++.+.+.+ +.++...+-++
T Consensus 163 ~lke~g~kpv~v~V---L~dK~G~dei~ 187 (203)
T COG0856 163 QLKEEGGKPVLVVV---LADKKGVDEIE 187 (203)
T ss_pred HHHHcCCCcEEEEE---EEccCCccccc
Confidence 99999999888877 55554444333
No 56
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=99.31 E-value=5.2e-11 Score=102.50 Aligned_cols=101 Identities=26% Similarity=0.278 Sum_probs=77.2
Q ss_pred CCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCCCe-----------EEEEeeec-CC-CCCEEEEEeCccCchHH
Q 022367 141 DDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNV-----------AEVMNLIG-DV-KGKVAVMVDDMIDTAGT 207 (298)
Q Consensus 141 ~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~-----------~~~~~~~g-~v-~gk~ViIVDDii~TG~T 207 (298)
+-+.|+++..+|+++|..+|..|+ +|+++++|.++.... .+.+.+.. .+ +|++|+||||+++||+|
T Consensus 53 ~id~Iv~iea~Gi~~a~~vA~~Lg-vp~v~vRK~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTGgT 131 (179)
T COG0503 53 GIDKIVTIEARGIPLAAAVALELG-VPFVPVRKKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGT 131 (179)
T ss_pred CCCEEEEEccccchhHHHHHHHhC-CCEEEEEecCCCCCcceeEEEEEeccceEEEEEhhhCCCCCEEEEEecchhcChH
Confidence 356999999999999999999998 999999997653211 11222222 23 69999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhc
Q 022367 208 ISKGAALLHQEGAREVYACSTHAVFSPPAIERLSS 242 (298)
Q Consensus 208 l~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~ 242 (298)
+.+..++++++|+..+.+++.-..-..+..++++.
T Consensus 132 ~~a~~~Ll~~~ga~vvg~~~~ie~~~~~gr~~l~~ 166 (179)
T COG0503 132 ALALIELLEQAGAEVVGAAFVIELGELDGRKKLED 166 (179)
T ss_pred HHHHHHHHHHCCCEEEEEEEEEEcCccccchhhcc
Confidence 99999999999999988888544433333444443
No 57
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=99.27 E-value=8.3e-11 Score=102.14 Aligned_cols=139 Identities=19% Similarity=0.220 Sum_probs=84.6
Q ss_pred EEEeeccCccccc--ccccCCCchHHHHHHHHHHH----h---CCCEEEEEcCCccc-ccCCCCcccccccchHHHHHHH
Q 022367 64 TAVIPYFGYARAD--RKTQGRESIAAKLVANLITE----A---GANRVLACDLHSGQ-SMGYFDIPVDHVYGQPVILDYL 133 (298)
Q Consensus 64 ~~viPY~~YsRqd--r~~~~~~~~~a~~va~ll~~----~---g~d~ii~vdlHs~~-~~~~f~i~~~~l~~~~~la~~l 133 (298)
..+..|-+..|+= +.+..|+.--++.+++++.. . ..|.|++|++|..+ .++.|| +..++++.+
T Consensus 36 ~~~~~Y~~~~~~li~~~K~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ivpVP~~~~r~~~RGfn-------q~~~la~~l 108 (190)
T TIGR00201 36 VSVYTYNEPLKELISRFKFRGQAEIIRALASLLSLTVSKAYRDLPDVIVPVPLSKEREWRRGFN-------QADLLAQCL 108 (190)
T ss_pred EEEEECchHHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccCCCCEEEeCCCCHHHHHHhCCC-------HHHHHHHHH
Confidence 4555676655551 22234555566667766543 1 24789999999975 556687 677888887
Q ss_pred HhhccCCCCeEEEe--eCCChHHHHHHHHHHcCCCCEEEEEeeecCCCeEEEEeeec-CCCCCEEEEEeCccCchHHHHH
Q 022367 134 ASKAISSDDLVVVS--PDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIG-DVKGKVAVMVDDMIDTAGTISK 210 (298)
Q Consensus 134 ~~~~~~~~~~viv~--p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~~~~~~~~g-~v~gk~ViIVDDii~TG~Tl~~ 210 (298)
........+.+.-. ....++.+. +|. .+....+.+.. +++||+|+|||||+|||.|+.+
T Consensus 109 ~~~~~~~~~~l~r~~~~~Q~~l~~~-----------------~R~-~n~~~~f~~~~~~~~~~~vllvDDV~TTGaTl~~ 170 (190)
T TIGR00201 109 SRWLFNYHNIVIRLNNETQSKLKAT-----------------LRF-LNLENAFDLKNNSFQGRNIVLVDDVVTTGATLHE 170 (190)
T ss_pred HHHhCCCcceEEEecccccccCCHH-----------------HHH-HHHhCcEEccCCCCCCCEEEEEeeeeccHHHHHH
Confidence 65420111111000 011111111 111 01011222222 4789999999999999999999
Q ss_pred HHHHHHHcCCCEEEEEE
Q 022367 211 GAALLHQEGAREVYACS 227 (298)
Q Consensus 211 a~~~Lk~~Ga~~V~~~~ 227 (298)
+++.|+++||++|++++
T Consensus 171 ~~~~L~~~Ga~~V~~~~ 187 (190)
T TIGR00201 171 IARLLLELGAASVQVWT 187 (190)
T ss_pred HHHHHHHcCCCEEEEEE
Confidence 99999999999999987
No 58
>PRK09213 pur operon repressor; Provisional
Probab=99.27 E-value=8.3e-11 Score=107.05 Aligned_cols=113 Identities=23% Similarity=0.269 Sum_probs=84.2
Q ss_pred CCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecC-CCe-------------EEEEeee-cCC-CCCEEEEEeCccCc
Q 022367 141 DDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQG-HNV-------------AEVMNLI-GDV-KGKVAVMVDDMIDT 204 (298)
Q Consensus 141 ~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~-~~~-------------~~~~~~~-g~v-~gk~ViIVDDii~T 204 (298)
+.++|+++..+|+++|..+|..|+ .|+.+++|..+. .+. .+.+.+. ..+ +|++|+||||+++|
T Consensus 130 ~iD~Vvtvet~GIplA~~vA~~L~-vp~vivRK~~K~~~G~~vs~~y~sgs~~~ie~m~L~~~~l~~G~rVLIVDDv~~T 208 (271)
T PRK09213 130 KIDAVMTVETKGIPLAYAVANYLN-VPFVIVRRDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKEGSRVLIVDDFMKA 208 (271)
T ss_pred CCCEEEEEccccHHHHHHHHHHHC-CCEEEEEECCCCCCCCcEEEEEEecccccceEEEEeHhhcCCcCEEEEEeeeccc
Confidence 456999999999999999999998 999999986642 111 1112221 134 79999999999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEecCCCCc
Q 022367 205 AGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVS 257 (298)
Q Consensus 205 G~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tnti~~~ 257 (298)
|+|+.++++.++++|+..+.+++.-..- +..+++.. .+..++..+.+...
T Consensus 209 GgTi~a~i~Ll~e~Ga~VvGv~vlVd~~--~~~~~l~~-~~~SL~~~~~vd~~ 258 (271)
T PRK09213 209 GGTINGMISLLKEFDAEVVGIGVLVETK--EPEERLVD-DYVSLLKLSEVDEK 258 (271)
T ss_pred CHhHHHHHHHHHHCCCEEEEEEEEEECC--CChhhcCC-ceEEEEEEehhccc
Confidence 9999999999999999988887743222 23455533 56777777777543
No 59
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.27 E-value=2.1e-11 Score=119.48 Aligned_cols=148 Identities=25% Similarity=0.239 Sum_probs=107.0
Q ss_pred HHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEEE-EEeeecCC-------------CeEEEEe-eecCCC
Q 022367 127 PVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRQGH-------------NVAEVMN-LIGDVK 191 (298)
Q Consensus 127 ~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~-~~k~r~~~-------------~~~~~~~-~~g~v~ 191 (298)
..+++.|.+.. ..+.++|+++...|...|..+|+.++ +|+.. +.|.|... +....+. ....++
T Consensus 272 ~~lg~~La~~~-~~~~D~VvpVPnqa~~lA~~la~~lg-ip~~~~lvk~~~~~rt~~~~~q~~R~~~vr~~f~~~~~~~~ 349 (484)
T PRK07272 272 KRMGKRLAQEF-PHDADIVIGVPNSSLSAASGYAEESG-LPYEMGLVKNQYVARTFIQPTQELREQGVRMKLSAVSGVVK 349 (484)
T ss_pred HHHHHHHHhhc-CCCCCEEEEecHHHHHHHHHHHHHHC-CCcccCeEEEccCCccccCCCHHHHHHHHhhCccccccccC
Confidence 45666676553 22456888888999999999999998 88732 22222110 0001122 245689
Q ss_pred CCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEecCCCCc-c-cCCCCCeeEEe
Q 022367 192 GKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVS-E-RNYFPQLTILS 269 (298)
Q Consensus 192 gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tnti~~~-~-~~~~~ki~~is 269 (298)
||+|+||||+++||.|+.++++.|+++||++|+++++||.+..++.--|.....++++..+.-... . ....+-+.++|
T Consensus 350 gk~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~~~p~~~~~c~ygid~~~~~~lia~~~~~~ei~~~~~~dsl~~~~ 429 (484)
T PRK07272 350 GKRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAIASPELKYPCFYGIDIQTRRELISANHSVEEICDIIGADSLTYLS 429 (484)
T ss_pred CCEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEEeCCccccChhhhccCcCHHHHHhcCCCHHHHHHHhCCCEEEEec
Confidence 999999999999999999999999999999999999999999999888876666676655442211 1 12466799999
Q ss_pred chHHHHH
Q 022367 270 VANLLGE 276 (298)
Q Consensus 270 va~lla~ 276 (298)
+.+++.-
T Consensus 430 ~~~l~~~ 436 (484)
T PRK07272 430 VDGLIES 436 (484)
T ss_pred HHHHHHH
Confidence 9777543
No 60
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=99.24 E-value=3.3e-11 Score=107.29 Aligned_cols=144 Identities=20% Similarity=0.299 Sum_probs=94.8
Q ss_pred CeEEEEeeccCccccc--ccccCCCchHHHHHHHHHHHh------CCCEEEEEcCCccc-ccCCCCcccccccchHHHHH
Q 022367 61 KNITAVIPYFGYARAD--RKTQGRESIAAKLVANLITEA------GANRVLACDLHSGQ-SMGYFDIPVDHVYGQPVILD 131 (298)
Q Consensus 61 ~~i~~viPY~~YsRqd--r~~~~~~~~~a~~va~ll~~~------g~d~ii~vdlHs~~-~~~~f~i~~~~l~~~~~la~ 131 (298)
.+...+..|-+-.|+= +-+..++..-++.+|+++... -+|.|++|++|..+ +++.|| +...+++
T Consensus 66 ~~~~~~~~Y~~~l~~~i~~~Kf~~~~~l~~~la~~l~~~~~~~~~~~~~iVpVPls~~r~~~RGFN-------Q~~~la~ 138 (225)
T COG1040 66 ERLRSLGSYNGPLRELISQLKFQGDLDLAKLLARLLAKALDDFLEKPDLIVPVPLSPSRLLERGFN-------QSELLAR 138 (225)
T ss_pred eeEEEEEEccHHHHHHHHHhhhCCchhHHHHHHHHHHHHHhhccccCCeEEEecCCHHHHHHcCCC-------HHHHHHH
Confidence 3567778888877762 222345666677777766442 35799999999775 778888 7888999
Q ss_pred HHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCCCeEEEEeeecCCCC-CEEEEEeCccCchHHHHH
Q 022367 132 YLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKG-KVAVMVDDMIDTAGTISK 210 (298)
Q Consensus 132 ~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~~~~~~~~g~v~g-k~ViIVDDii~TG~Tl~~ 210 (298)
.+...+ + .+. .+.+.+....+-+ . -.++|. .+....+.+.+..+. |+|+|||||+|||.|+.+
T Consensus 139 ~l~~~~-~--~~~-------~~~r~k~~~~q~~-l----~~~~rr-~nl~~aF~~~~~~~~~~~vlLvDDV~TTGaTl~~ 202 (225)
T COG1040 139 ALARRL-G--KPI-------ALRRVKDTSPQQG-L----KALERR-RNLKGAFRLKKGIEEPKNVLLVDDVYTTGATLKE 202 (225)
T ss_pred HHHHHh-C--chH-------HHHHHhccccccc-c----chHHHH-HhccCCeecCCCCCCCCeEEEEecccccHHHHHH
Confidence 987753 1 111 2222222221111 0 011121 122223445555555 999999999999999999
Q ss_pred HHHHHHHcCCCEEEEEE
Q 022367 211 GAALLHQEGAREVYACS 227 (298)
Q Consensus 211 a~~~Lk~~Ga~~V~~~~ 227 (298)
+++.|++.|+++|.+++
T Consensus 203 ~~~~L~~~Ga~~v~~~~ 219 (225)
T COG1040 203 AAKLLREAGAKRVFVLT 219 (225)
T ss_pred HHHHHHHcCCceEEEEE
Confidence 99999999999999988
No 61
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.19 E-value=2.6e-10 Score=111.92 Aligned_cols=139 Identities=27% Similarity=0.268 Sum_probs=96.9
Q ss_pred HHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEE--EEEeeecC-C-----------CeEEE-Eeeec-CC
Q 022367 127 PVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLA--IVDKRRQG-H-----------NVAEV-MNLIG-DV 190 (298)
Q Consensus 127 ~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~--~~~k~r~~-~-----------~~~~~-~~~~g-~v 190 (298)
..+++.|.+.. ..+.++++++..+|.+.|..+++.++ +|+. +++. |.. . ...+. ..... .+
T Consensus 282 ~~~g~~La~~~-~~~~D~Vv~VP~sg~~~A~~la~~lg-ip~~~~lir~-~y~grt~i~~~q~~r~~~v~~k~~~~~~~~ 358 (479)
T PRK09123 282 KNIGRELARES-PVDADVVVPVPDSGVPAAIGYAQESG-IPFELGIIRN-HYVGRTFIQPTQQIRNLGVKLKHNANRAVI 358 (479)
T ss_pred HHHHHHHHHhC-CCCCeEEEEcCccHHHHHHHHHHhcC-CCeeheEEEE-eecCccccccccccccccEEEEeccccccc
Confidence 34566666543 33567999999999999999999998 8875 3432 221 0 01111 11222 37
Q ss_pred CCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEE-----EeccCCc---cHHHHhhcCCCCEEEEecCCCCccc-CC
Q 022367 191 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS-----THAVFSP---PAIERLSSGLFQEVIITNTIPVSER-NY 261 (298)
Q Consensus 191 ~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~-----tH~l~~~---~a~~~l~~~~i~~ii~tnti~~~~~-~~ 261 (298)
+||+|+||||+++||.|+.++++.|+++||++|++++ +||.|.+ ++.+.|..+.. ++..-.+ ..
T Consensus 359 ~gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v~~~~~~p~~~~~~~~gid~~~~~~l~~~~~-------~~~ei~~~ig 431 (479)
T PRK09123 359 EGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRIASPPITHPCFYGIDTPERSKLLAATH-------SLEEMAEYIG 431 (479)
T ss_pred CCCEEEEEeceeCchHHHHHHHHHHHHcCCCEEEEEEcCCCCccceeecCCCCCHHHHHHcCC-------CHHHHHHHhC
Confidence 8999999999999999999999999999999999999 8999888 77776654331 1211111 23
Q ss_pred CCCeeEEechHHHH
Q 022367 262 FPQLTILSVANLLG 275 (298)
Q Consensus 262 ~~ki~~isva~lla 275 (298)
..-+..+|+..++.
T Consensus 432 adsl~yls~~~l~~ 445 (479)
T PRK09123 432 ADSLAFLSIDGLYR 445 (479)
T ss_pred CCeEeccCHHHHHH
Confidence 44577888877654
No 62
>PLN02440 amidophosphoribosyltransferase
Probab=99.15 E-value=3.9e-10 Score=110.85 Aligned_cols=100 Identities=27% Similarity=0.295 Sum_probs=73.8
Q ss_pred HHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEE--EEEeeecC-C-----------CeEEE-Ee-eecCC
Q 022367 127 PVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLA--IVDKRRQG-H-----------NVAEV-MN-LIGDV 190 (298)
Q Consensus 127 ~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~--~~~k~r~~-~-----------~~~~~-~~-~~g~v 190 (298)
..+++.|.+.. ..+.+++++...+|..+|..+++.++ +|+. +++ .|.. . ..... .. ....+
T Consensus 262 ~~~g~~La~~~-~~~~d~vvpVP~s~~~~A~~la~~lg-iP~~~~lvr-~ry~~rt~i~~~q~~r~~~~~~k~~~~~~~v 338 (479)
T PLN02440 262 LEFGEILATEI-PVDCDVVIPVPDSGRVAALGYAAKLG-VPFQQGLIR-SHYVGRTFIEPSQKIRDFSVKLKLNPVRSVL 338 (479)
T ss_pred HHHHHHHHHhc-CCCCCEEEEeCCcHHHHHHHHHHHhC-CCchhheEE-EeeccccccCcchhhhhhhheeeeecccccc
Confidence 44566666554 23456888999999999999999998 8874 333 2221 0 00111 11 22468
Q ss_pred CCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEe
Q 022367 191 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTH 229 (298)
Q Consensus 191 ~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH 229 (298)
+||+|+||||++|||.|+.++++.|+++||++|++++.-
T Consensus 339 ~gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v~~ 377 (479)
T PLN02440 339 EGKRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRIAS 377 (479)
T ss_pred cCceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEEEC
Confidence 999999999999999999999999999999999999853
No 63
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.13 E-value=1.5e-10 Score=112.38 Aligned_cols=146 Identities=23% Similarity=0.185 Sum_probs=89.4
Q ss_pred HHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEEE-EEeeecC------CC-e-----EEEEeeecCCCCCE
Q 022367 128 VILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRQG------HN-V-----AEVMNLIGDVKGKV 194 (298)
Q Consensus 128 ~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~-~~k~r~~------~~-~-----~~~~~~~g~v~gk~ 194 (298)
.+.++|.+.. ..+.+++++....|..+|..+|+.++ +|+.. +.|.|.. .. . .+.....+.++||+
T Consensus 259 ~~G~~La~~~-~~~~D~Vv~VPdsg~~~A~~~a~~lg-ip~~~~l~k~r~~~rtfi~~~qr~~~~~~k~~~~~~~v~gk~ 336 (442)
T PRK08341 259 RMGVELARES-PAEGDVVIAVPDSGRTAALGFAHESG-IPYMEGLIKNRYIGRTFIMPSGRELKVKLKLSPVREVINGKR 336 (442)
T ss_pred HHHHHhhccc-CCCCceEEEecCchHHHHHHHHHHhC-CCchheEEEeccccccccCcCchhhhheeeecccccccCCCE
Confidence 4556665543 22344555555556689999999998 88853 5555421 00 0 01112345689999
Q ss_pred EEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEecC-CCCccc-CCCCCeeEEechH
Q 022367 195 AVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNT-IPVSER-NYFPQLTILSVAN 272 (298)
Q Consensus 195 ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tnt-i~~~~~-~~~~ki~~isva~ 272 (298)
|+||||+++||.|+.++++.|+++||++|++.+.-|-+..++.--+.-..-++++..+- +..-.+ ....-+..+|+..
T Consensus 337 VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~~spp~~~pc~~gid~~~~~~lia~~~~~eei~~~ig~dsl~~ls~e~ 416 (442)
T PRK08341 337 VVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRIASPPIRYPCYMGIDIPTRHELIAAWGSVEDIRKEIGADSLAYLSVEG 416 (442)
T ss_pred EEEEeeeeccHHHHHHHHHHHHhcCCcEEEEEEcCCCccCCCceeeecCCHHHHhhcCCCHHHHHHHhCCCEEeccCHHH
Confidence 99999999999999999999999999999998865544433332222212223332221 110001 2345577788866
Q ss_pred HHH
Q 022367 273 LLG 275 (298)
Q Consensus 273 lla 275 (298)
++.
T Consensus 417 l~~ 419 (442)
T PRK08341 417 LKR 419 (442)
T ss_pred HHH
Confidence 643
No 64
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.10 E-value=3.1e-10 Score=112.16 Aligned_cols=148 Identities=21% Similarity=0.230 Sum_probs=90.7
Q ss_pred HHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEE--EEEeeecCCC------------eEEEEe-eecCCC
Q 022367 127 PVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLA--IVDKRRQGHN------------VAEVMN-LIGDVK 191 (298)
Q Consensus 127 ~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~--~~~k~r~~~~------------~~~~~~-~~g~v~ 191 (298)
..||+++.+.....+.++|++....+...|..+++.++ +|+. +++.+..+.. ....+. ....++
T Consensus 279 ~~LA~~l~~~~~~~~~D~VvpVP~s~~~~A~~la~~lg-ip~~~~l~k~~~~~rt~i~~~q~~R~~~vr~~f~~~~~~v~ 357 (501)
T PRK09246 279 EKLAEKIKREWPDLDIDVVIPIPDTSRDAALEIARILG-VPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAIRAEFK 357 (501)
T ss_pred HHHHHHHHHHhcCCCCcEEEEeCccHHHHHHHHHHHHC-CCccceEEEEecccccccCcCHHHHHHHHHhhcCCcccccc
Confidence 44555554433222346788888889999999999998 7874 2222111100 001122 234689
Q ss_pred CCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEec-CCCCccc-CCCCCeeEEe
Q 022367 192 GKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITN-TIPVSER-NYFPQLTILS 269 (298)
Q Consensus 192 gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tn-ti~~~~~-~~~~ki~~is 269 (298)
||+|+||||+++||.|+.++++.|+++||++|++++.-+.+..++.--+.-..-++++..+ |+..-.+ ....-+..+|
T Consensus 358 gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~ap~i~~pc~ygid~~~~~eLia~~~~~e~i~~~ig~dsl~yls 437 (501)
T PRK09246 358 GKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASAAPPVRFPNVYGIDMPTANELIAHGRTVEEIRQIIGADGLIYQD 437 (501)
T ss_pred CCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEEccccccCcccccCCCCHHHHhhcCCCHHHHHHHhCCCeEeecC
Confidence 9999999999999999999999999999999999987554443333333222222333222 2211111 2345577888
Q ss_pred chHHHH
Q 022367 270 VANLLG 275 (298)
Q Consensus 270 va~lla 275 (298)
+..+..
T Consensus 438 ~~~l~~ 443 (501)
T PRK09246 438 LEDLIE 443 (501)
T ss_pred HHHHHH
Confidence 866654
No 65
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=99.09 E-value=1.1e-09 Score=92.24 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=63.3
Q ss_pred chHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEE-EEEeeec---CCCeEEEEeeecCCCCCEEEEEeC
Q 022367 125 GQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLA-IVDKRRQ---GHNVAEVMNLIGDVKGKVAVMVDD 200 (298)
Q Consensus 125 ~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~-~~~k~r~---~~~~~~~~~~~g~v~gk~ViIVDD 200 (298)
....+++++.+. .+.++++++.+||+.+|..++++|+ .++. ++.-.+. ..+..+... .-..+||+|+||||
T Consensus 18 ~i~~la~~I~~~---~~~d~vvgv~~GG~~fa~~L~~~L~-~~~v~~i~~ssY~~~~~~~~~~~~-~~~~~gk~VLIVDD 92 (156)
T PRK09177 18 DARALAWRLLPA---GQWKGIIAVTRGGLVPAAILARELG-IRLVDTVCISSYDHDNQGELKVLK-RAEGDGEGFLVVDD 92 (156)
T ss_pred HHHHHHHHHHhh---CCCCEEEEEecCCeehHHHHHHHcC-CCceeEEEEEEECCCcCCcEEEec-CCCcCcCEEEEEee
Confidence 345677777553 2467999999999999999999998 7752 3332221 122222221 11468999999999
Q ss_pred ccCchHHHHHHHHHHHH
Q 022367 201 MIDTAGTISKGAALLHQ 217 (298)
Q Consensus 201 ii~TG~Tl~~a~~~Lk~ 217 (298)
+++||.|+.++.+.+++
T Consensus 93 IiDTG~Tl~~v~~~l~~ 109 (156)
T PRK09177 93 LVDTGGTARAVREMYPK 109 (156)
T ss_pred eeCCHHHHHHHHHHHhh
Confidence 99999999999999974
No 66
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=99.07 E-value=1.4e-09 Score=90.00 Aligned_cols=119 Identities=20% Similarity=0.219 Sum_probs=91.5
Q ss_pred hHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCCCeE-------E----EEe-eecCC-CC
Q 022367 126 QPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVA-------E----VMN-LIGDV-KG 192 (298)
Q Consensus 126 ~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~~-------~----~~~-~~g~v-~g 192 (298)
...+++++++.. +.+-.+|++.+..|+.+.-.+|.++| +.++-++|..+-++.. + .+. ..+.+ .|
T Consensus 45 idlf~~h~~~~~-~~~Id~iaGlEaRGFLFGP~iAlalG-~~fVPiRK~gKLPG~~i~~~Y~lEYg~d~~Emq~~Ai~~g 122 (183)
T KOG1712|consen 45 IDLFVDHYRETF-EMKIDVIAGLEARGFLFGPSIALALG-AGFVPIRKPGKLPGEVISESYELEYGEDRFEMQKGAIKPG 122 (183)
T ss_pred HHHHHHHHHHHh-cCcceEEEeeeecceecCcHHHHHhC-CCeeecccCCCCCCceeEEEEeeecCccceeeeccccCCC
Confidence 345666666543 34457999999999999999999998 8999888876544321 0 011 23456 59
Q ss_pred CEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCC
Q 022367 193 KVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQ 246 (298)
Q Consensus 193 k~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~ 246 (298)
.+|+||||++.||+|+.+|.+.+.+.||+.+-++|.-.+-.-...++|..-++-
T Consensus 123 ~rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~~vieL~~LkGr~kL~~~pl~ 176 (183)
T KOG1712|consen 123 QRVVVVDDLLATGGTLAAATELLERVGAEVVECACVIELPELKGREKLKGKPLF 176 (183)
T ss_pred CeEEEEechhhcCccHHHHHHHHHHhccEEEEEEEEEEccccCCccccCCCccE
Confidence 999999999999999999999999999999999998777666677888653433
No 67
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.06 E-value=5.9e-10 Score=109.65 Aligned_cols=148 Identities=21% Similarity=0.200 Sum_probs=94.2
Q ss_pred HHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEEE-EEeeecC------CC--------eEEEEeeecCCC
Q 022367 127 PVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRQG------HN--------VAEVMNLIGDVK 191 (298)
Q Consensus 127 ~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~-~~k~r~~------~~--------~~~~~~~~g~v~ 191 (298)
..++++|.+.. ..+.++|+++...|.+.|..+|+.++ +|+.. +.|.|.. .+ ..+...+...++
T Consensus 299 ~~~G~~La~~~-~~~~DvVv~VP~sg~~~A~g~A~~lg-ip~~~~L~r~~y~grtfi~p~q~~R~~~~~~kl~~~~~~~~ 376 (500)
T PRK07349 299 QRLGQQLAKES-PVDADLVIGVPDSGIPAAIGFSQASG-IPYAEGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDVLA 376 (500)
T ss_pred HHHHHHHhhhc-ccCCcEEEEeccccHHHHHHHHHHHC-CCchhceEEEeccCccccCCCHHHHHhhhheeeeccccccC
Confidence 45677776554 34557899999999999999999998 88842 2333221 00 011112344579
Q ss_pred CCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEecC-CCCccc-CCCCCeeEEe
Q 022367 192 GKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNT-IPVSER-NYFPQLTILS 269 (298)
Q Consensus 192 gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tnt-i~~~~~-~~~~ki~~is 269 (298)
||+|+||||+++||.|+.++++.|+++||++|++...-|-+..++.--+.-..-++++..+- ++.-.+ .....+..+|
T Consensus 377 gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~i~sPp~~~pc~ygid~~~~~eLia~~~~~eei~~~igadsl~yls 456 (500)
T PRK07349 377 GKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRISSPPVTHPCFYGIDTDTQDQLIAATKSVEEIAEQIGVDSLAYLS 456 (500)
T ss_pred CCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEEeCCCcccccccccCCCCCHHHHhhcCCCHHHHHHHhCCCeEeccC
Confidence 99999999999999999999999999999999998654443333333222211223332221 111111 2355688888
Q ss_pred chHHHHH
Q 022367 270 VANLLGE 276 (298)
Q Consensus 270 va~lla~ 276 (298)
+..++.-
T Consensus 457 ~e~l~~a 463 (500)
T PRK07349 457 WEGMLEA 463 (500)
T ss_pred HHHHHHH
Confidence 8776543
No 68
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.06 E-value=8.7e-10 Score=95.34 Aligned_cols=100 Identities=23% Similarity=0.278 Sum_probs=74.0
Q ss_pred chHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCC-----CeEEEE-eeecC-CCCCEEEE
Q 022367 125 GQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGH-----NVAEVM-NLIGD-VKGKVAVM 197 (298)
Q Consensus 125 ~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~-----~~~~~~-~~~g~-v~gk~ViI 197 (298)
.+..+|+.|.+. ++.+++++++.+||+..|+-+++.|+-.++..+.-+.... +...+. ...-+ +.||+|||
T Consensus 15 ~~~~lA~kI~~s--~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~~~~~~~~~~~v~~~~~~d~l~GkkVLI 92 (192)
T COG2236 15 LCRALAEKIRAS--GFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDETAERDGEAKVKYPITIDPLSGKKVLI 92 (192)
T ss_pred HHHHHHHHHHHc--CCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEehhhcccCCcceeecCccccccCCCeEEE
Confidence 467788888865 4678899999999999999999999844665554333211 111121 22234 89999999
Q ss_pred EeCccCchHHHHHHHHHHHHcCCCEEEEE
Q 022367 198 VDDMIDTAGTISKGAALLHQEGAREVYAC 226 (298)
Q Consensus 198 VDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (298)
||||.|||.||..|.+.|++..+..+..+
T Consensus 93 VDDI~DTG~Tl~~a~~~l~~~~p~e~rta 121 (192)
T COG2236 93 VDDIVDTGETLELALEELKKLAPAEVRTA 121 (192)
T ss_pred EecccCchHhHHHHHHHHHhhCchhhhhh
Confidence 99999999999999999999655555443
No 69
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.04 E-value=5.1e-10 Score=109.07 Aligned_cols=147 Identities=22% Similarity=0.193 Sum_probs=92.4
Q ss_pred HHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEEE-EEeeecC------CC-------e-EEEEeeecCCC
Q 022367 127 PVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRQG------HN-------V-AEVMNLIGDVK 191 (298)
Q Consensus 127 ~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~-~~k~r~~------~~-------~-~~~~~~~g~v~ 191 (298)
..+++.|.+.. ..+.++|++....|...|..+|+.++ +|+.. +.|.+.. .. . .......+.++
T Consensus 260 ~~~g~~La~~~-~~~~D~Vv~VP~sg~~~A~~la~~lg-ip~~~~l~r~~~~~r~~i~~~q~~R~~~v~~k~~~~~~~~~ 337 (442)
T TIGR01134 260 KRMGEKLARES-PVEADVVIPVPDSGRSAALGFAQASG-IPYREGLIKNRYVGRTFIMPTQELRELSVRLKLNPIREVFR 337 (442)
T ss_pred HHHHHHHHHhc-CCCCEEEEEccCCHHHHHHHHHHHhC-CCchHHeEEeccccccccCCCHHHHHHHHhhhcccccccCC
Confidence 45666666654 33556788877789999999999998 88753 3333211 00 0 01112335689
Q ss_pred CCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEecC-CCCccc-CCCCCeeEEe
Q 022367 192 GKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNT-IPVSER-NYFPQLTILS 269 (298)
Q Consensus 192 gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tnt-i~~~~~-~~~~ki~~is 269 (298)
||+|+||||+++||.|+.++++.|+++||++|++++.-|-+..++.--+.-..-++++..+. +..-.+ ...+-+.++|
T Consensus 338 gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~~spp~~~pc~yg~d~~~~~el~~~~~~~~~i~~~~~~~~l~~~~ 417 (442)
T TIGR01134 338 GKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRIASPPIRYPCYYGIDMPTREELIANGRTVEEIAKEIGADSLAYLS 417 (442)
T ss_pred CCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEEccCCccCCcccccCCCCHHHHhhcCCCHHHHHHHhCCCEEEEec
Confidence 99999999999999999999999999999999988864433333322221111122332222 111111 2456788999
Q ss_pred chHHHH
Q 022367 270 VANLLG 275 (298)
Q Consensus 270 va~lla 275 (298)
+.+++.
T Consensus 418 ~~~l~~ 423 (442)
T TIGR01134 418 LEGLKE 423 (442)
T ss_pred HHHHHH
Confidence 977754
No 70
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.02 E-value=7.2e-10 Score=108.51 Aligned_cols=147 Identities=24% Similarity=0.261 Sum_probs=95.7
Q ss_pred HHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEEE-EEeeec-CCC------------eEEEEe-eecCCC
Q 022367 127 PVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRQ-GHN------------VAEVMN-LIGDVK 191 (298)
Q Consensus 127 ~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~-~~k~r~-~~~------------~~~~~~-~~g~v~ 191 (298)
..+.+.|.+.. ..+.++|++....|.+.|..+|+.++ +|+.. +.|.|. +.. ....+. ....++
T Consensus 270 ~~~G~~La~~~-~~~~D~vv~VP~s~~~~A~~~a~~~g-ip~~~~lik~~~~~rt~~~~~~~~R~~~v~~~f~~~~~~i~ 347 (471)
T PRK06781 270 KNMGKRLAAEA-PIEADVVTGVPDSSISAAIGYAEATG-IPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVRGVVE 347 (471)
T ss_pred HHHHHHHhhhC-CCCCcEEEEcChhHHHHHHHHHHHhC-CCcccceEEEccCCCCCcCCCHHHHHHHHhcceeccccccC
Confidence 34666666654 23456888888899999999999998 88743 223222 110 011122 234679
Q ss_pred CCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEecC-CCCccc-CCCCCeeEEe
Q 022367 192 GKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNT-IPVSER-NYFPQLTILS 269 (298)
Q Consensus 192 gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tnt-i~~~~~-~~~~ki~~is 269 (298)
||+|+||||+++||.|+.++++.|+++||++|++..+-|-+..++.--+.-..-++++..+- ++.-.+ .....+..+|
T Consensus 348 gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~sPpi~~pc~yGid~~~~~elia~~~~~eei~~~igadsl~yls 427 (471)
T PRK06781 348 GKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASPPLKYPCFYGIDIQTRKELIAANHTVEEIREMIGADSLTFLS 427 (471)
T ss_pred CceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEECCCCccCCcccccCCCCHHHHHhcCCCHHHHHHHhCCCEEeccC
Confidence 99999999999999999999999999999999999876655555444333222233333322 211111 2355688888
Q ss_pred chHHHH
Q 022367 270 VANLLG 275 (298)
Q Consensus 270 va~lla 275 (298)
+..++.
T Consensus 428 ~e~l~~ 433 (471)
T PRK06781 428 EDGLVD 433 (471)
T ss_pred HHHHHH
Confidence 876654
No 71
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=98.99 E-value=1.3e-09 Score=106.77 Aligned_cols=147 Identities=25% Similarity=0.282 Sum_probs=96.5
Q ss_pred HHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEEE-EEeeec-CCC------------eEEEEe-eecCCC
Q 022367 127 PVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRQ-GHN------------VAEVMN-LIGDVK 191 (298)
Q Consensus 127 ~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~-~~k~r~-~~~------------~~~~~~-~~g~v~ 191 (298)
..+.+.|.+.. ..+.+++++....|...|..+|+.++ +|+.. +.|.|. +.. ....+. ..+.++
T Consensus 270 ~~~G~~La~~~-~~~~D~VvpVP~s~~~~A~gla~~~g-ip~~~~lik~~~~~Rt~i~~~~~~R~~nv~~~f~~~~~~v~ 347 (475)
T PRK07631 270 KNLGKRLALEA-PVEADVVTGVPDSSISAAIGYAEATG-IPYELGLIKNRYVGRTFIQPSQALREQGVKMKLSPVRGVVE 347 (475)
T ss_pred HHHHHHHHhhC-CCCCcEEEEechhHHHHHHHHHHHHC-CCcccceEEEecCCCCCcCCCHHHHHHHHhhhhhhcccccC
Confidence 34566666554 33556888888889999999999998 88742 223222 110 001122 234679
Q ss_pred CCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEecC-CCCccc-CCCCCeeEEe
Q 022367 192 GKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNT-IPVSER-NYFPQLTILS 269 (298)
Q Consensus 192 gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tnt-i~~~~~-~~~~ki~~is 269 (298)
||+|+||||+++||.|+.++++.|+++||++|++.++-|-+..++.--+.-..-++++..+- +..-.+ .....+..+|
T Consensus 348 gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~~sPpi~~pc~yGid~~~~~eLia~~~~~eei~~~igadsl~yls 427 (475)
T PRK07631 348 GKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISSPPITHPCFYGIDTSTKEELIASNHSVEEIRQLIGADSLAFLS 427 (475)
T ss_pred CceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEeCCCccCCcccCCCCCCHHHHhhcCCCHHHHHHHhCCCeEeccC
Confidence 99999999999999999999999999999999999877755555544443333334443332 211111 2455688889
Q ss_pred chHHHH
Q 022367 270 VANLLG 275 (298)
Q Consensus 270 va~lla 275 (298)
+..++.
T Consensus 428 ~e~l~~ 433 (475)
T PRK07631 428 QEGLLE 433 (475)
T ss_pred HHHHHH
Confidence 877654
No 72
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.97 E-value=4.3e-09 Score=87.51 Aligned_cols=110 Identities=24% Similarity=0.296 Sum_probs=81.8
Q ss_pred hHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcC-----CCCEEEEEe--eecCCCe-------EEEEeeecCCC
Q 022367 126 QPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLS-----DAPLAIVDK--RRQGHNV-------AEVMNLIGDVK 191 (298)
Q Consensus 126 ~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~-----~~~~~~~~k--~r~~~~~-------~~~~~~~g~v~ 191 (298)
..-++.+|.+++...++.+++|+-.+|++.|..+++.++ .+|+..++- +|+.-.. .....+..++.
T Consensus 16 itRia~eIiErnk~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lDIt~yRDDl~~~~~~~p~~~~t~~~~di~ 95 (179)
T COG2065 16 ITRIAHEIIERNKGLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELDITLYRDDLTQKGPLRPQAKTTILPFDIT 95 (179)
T ss_pred HHHHHHHHHHHhCCCCceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeeeEEeEEeechhhhcCccCCcccCccCccccc
Confidence 445677777776567889999999999999999999874 245655442 4432111 11123456899
Q ss_pred CCEEEEEeCccCchHHHHHHHHHHHHcC-CCEEEEEEEeccCCccHHH
Q 022367 192 GKVAVMVDDMIDTAGTISKGAALLHQEG-AREVYACSTHAVFSPPAIE 238 (298)
Q Consensus 192 gk~ViIVDDii~TG~Tl~~a~~~Lk~~G-a~~V~~~~tH~l~~~~a~~ 238 (298)
||+|++|||++-||.|+.+|.++|...| +.+|..+| +...+..|
T Consensus 96 ~k~VILVDDVLytGRTIRAAldal~d~GRPa~I~Lav---LVDRGHRE 140 (179)
T COG2065 96 GKRVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAV---LVDRGHRE 140 (179)
T ss_pred CCEEEEEeeecccCccHHHHHHHHHhcCCcceEEEEE---EEcCCCcc
Confidence 9999999999999999999999999999 56788887 55555433
No 73
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.92 E-value=1.1e-08 Score=88.99 Aligned_cols=116 Identities=20% Similarity=0.304 Sum_probs=98.1
Q ss_pred CCCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCCCeEEE---EeeecCCCCCEEEEEeCccCchHHHHHHHHHHH
Q 022367 140 SDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEV---MNLIGDVKGKVAVMVDDMIDTAGTISKGAALLH 216 (298)
Q Consensus 140 ~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~~~~---~~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk 216 (298)
.++.++|++.+.|+.+...+.+.+..+++..+.-+|+.....-. ..++.+++++.|+|+|.|+.||+|+..|++.|+
T Consensus 69 ~~~i~~V~ILRAGl~m~~gl~~~~P~a~vG~ig~~Rdeet~~p~~yy~KLP~~~~~~~viv~DPMLATG~s~i~ai~~L~ 148 (210)
T COG0035 69 GKKIVIVPILRAGLGMVEGLLKLIPSARVGHIGIYRDEETLEPVLYYEKLPEDIDERTVIVLDPMLATGGSAIAAIDLLK 148 (210)
T ss_pred CCcEEEEEEeeccccHHHHHHHhCCcceEEEEEEEecCccCceehhHHhCCCcccCCeEEEECchhhccHhHHHHHHHHH
Confidence 34589999999999999999999987888899888975543211 145668999999999999999999999999999
Q ss_pred Hc-CCCEEEEEEEeccCCccHHHHhhcCCCCEEEEecCCCCc
Q 022367 217 QE-GAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVS 257 (298)
Q Consensus 217 ~~-Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tnti~~~ 257 (298)
++ |+++|.++|. +.++.+++++.++..+--++|-+|...
T Consensus 149 ~~G~~~~I~~v~~--vAapeGi~~v~~~~p~v~I~ta~iD~~ 188 (210)
T COG0035 149 KRGGPKNIKVVSL--VAAPEGIKAVEKAHPDVEIYTAAIDEG 188 (210)
T ss_pred HhCCCceEEEEEE--EecHHHHHHHHHhCCCCeEEEEEeccc
Confidence 99 8899998885 667889999998888888888888653
No 74
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.90 E-value=7e-09 Score=86.73 Aligned_cols=125 Identities=14% Similarity=0.210 Sum_probs=87.2
Q ss_pred chHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCC------CCE--EEEEeeecC--C--CeEEEE--eeecCC
Q 022367 125 GQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSD------APL--AIVDKRRQG--H--NVAEVM--NLIGDV 190 (298)
Q Consensus 125 ~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~------~~~--~~~~k~r~~--~--~~~~~~--~~~g~v 190 (298)
....||+-+.+.. ...+.++++..+||.++...+.+.|.+ .|+ .|++.+... . +.+.++ ....++
T Consensus 45 r~~rlakDi~~~~-g~~~i~~lcVlkG~ykF~adLve~l~n~~s~~~~pmtvDFIR~kSY~n~~stg~iqiig~d~l~~l 123 (216)
T KOG3367|consen 45 RVERLAKDIMKEI-GNKPIIFLCVLKGGYKFFADLVERLKNRNSDRPLPMTVDFIRAKSYCNDQSTGDIQIIGGDDLSTL 123 (216)
T ss_pred HHHHhhhhhhhcc-CCCceEEEEEecchhHHHHHHHHHHhhcccCCCcceeeeeeehhhhcCCcccCCceeecCCCHHHh
Confidence 3455666665543 567789999999999999999998753 333 455543321 1 122222 112268
Q ss_pred CCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEecCCCC
Q 022367 191 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPV 256 (298)
Q Consensus 191 ~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tnti~~ 256 (298)
.||+|+|||||++||.|+......+++.+++.|.++. ++++.... .-+....++---||.
T Consensus 124 tgK~VliVeDIvdTGrTl~~Lls~~~~~k~~~v~vas---LL~Krt~R---~v~yk~dy~gFEiPd 183 (216)
T KOG3367|consen 124 TGKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVAS---LLVKRTRR---SVGYKPDYVGFEIPD 183 (216)
T ss_pred cCCcEEEEEeeccccchHHHHHHHHHhcCccceeeee---eccccccc---ccCCCcccccccCCc
Confidence 9999999999999999999999999999999999987 67765322 124555555555554
No 75
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=98.88 E-value=1.8e-08 Score=88.68 Aligned_cols=114 Identities=21% Similarity=0.360 Sum_probs=92.8
Q ss_pred CCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCCCe-EEE--EeeecCCCCCEEEEEeCccCchHHHHHHHHHHHH
Q 022367 141 DDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNV-AEV--MNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQ 217 (298)
Q Consensus 141 ~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~-~~~--~~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~ 217 (298)
++.++|++.++|..+...+.+.+.++++.++.-+|+..+. ... ..++.++++++|+|+|.+++||+|+.++++.|++
T Consensus 67 ~~i~~V~IlRaG~~m~~~~~~~~p~a~~g~i~i~r~~~t~~p~~~y~~LP~~i~~~~VillDpmlaTG~s~~~ai~~L~~ 146 (207)
T PF14681_consen 67 DKICIVPILRAGLPMLEGFREVFPDARVGHIGIQRDEETLEPVLYYNKLPEDIENRKVILLDPMLATGGSAIAAIEILKE 146 (207)
T ss_dssp GCEEEEEETTTHHHHHHHHHHHSTTSEEEEEEEEEETTTSSEEEEEEE--TTGTTSEEEEEESEESSSHHHHHHHHHHHH
T ss_pred ccEEEEEEeCCcHHHHHHHHHhCCCcceEEEEEEEcCCccceeeeHhhCCCCccCCEEEEEeccccchhhHHHHHHHHHH
Confidence 4789999999999999999999987888888877765432 122 2577788999999999999999999999999999
Q ss_pred cCC--CEEEEEEEeccCCccHHHHhhcCCCCEEEEecCCCC
Q 022367 218 EGA--REVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPV 256 (298)
Q Consensus 218 ~Ga--~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tnti~~ 256 (298)
+|+ ++|.+++. +.++.+++++.+...+--++|-+|..
T Consensus 147 ~G~~~~~I~~v~~--ias~~Gl~~l~~~~P~v~I~ta~iD~ 185 (207)
T PF14681_consen 147 HGVPEENIIIVSV--IASPEGLERLLKAFPDVRIYTAAIDP 185 (207)
T ss_dssp TTG-GGEEEEEEE--EEEHHHHHHHHHHSTTSEEEEEEEES
T ss_pred cCCCcceEEEEEE--EecHHHHHHHHHhCCCeEEEEEEEcc
Confidence 987 57877774 56788999998766677778877754
No 76
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=98.87 E-value=7.5e-09 Score=101.42 Aligned_cols=147 Identities=20% Similarity=0.159 Sum_probs=90.9
Q ss_pred HHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEEE-EEeeecCC------C------eEEE-E-eeecCCC
Q 022367 127 PVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRQGH------N------VAEV-M-NLIGDVK 191 (298)
Q Consensus 127 ~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~-~~k~r~~~------~------~~~~-~-~~~g~v~ 191 (298)
..+.+.|.+.. ..+.++|+++...+...|..+|+.++ +|+.. +.|.|... . .... + .....++
T Consensus 278 ~~~G~~La~~~-~~~~D~VvpVP~s~~~~A~g~a~~~g-ip~~~~L~r~r~~~r~fi~~~q~~R~~~~~~kl~~~~~~i~ 355 (474)
T PRK06388 278 VRMGMRLAKES-PVEADVVVPVPDSGRSQAIGFSMASG-IPYTEGLIKNRYSERTFIMPTQSDRKAAIKLKLNPIREVIS 355 (474)
T ss_pred HHHHHHHHhhc-cCCCcEEEeeCCCcHHHHHHHHHHhC-CCchhheEEecccCCcccCCchhhhhhceeEEecccccccc
Confidence 34566666543 23445677777677888999999998 88742 33333211 0 0111 1 1223578
Q ss_pred CCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEecC-CCCccc-CCCCCeeEEe
Q 022367 192 GKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNT-IPVSER-NYFPQLTILS 269 (298)
Q Consensus 192 gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tnt-i~~~~~-~~~~ki~~is 269 (298)
||+|+||||+++||.|+.+++++|+++||++|++..+-|-+..++.--+.-..-++++..+- +..-.+ .....+..+|
T Consensus 356 gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~sPpi~~pc~yGid~~~~~eLia~~~~~eei~~~igadsl~yls 435 (474)
T PRK06388 356 GKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGSPHIIAPCYFGVDMKTKDQFIARGKTDEEINNEIGADSLAFLS 435 (474)
T ss_pred CceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeCCCCccCCcccCCCCCCHHHHHhcCCCHHHHHHHhCCCeeeccC
Confidence 99999999999999999999999999999999998876644444433332222233333221 111111 2345677888
Q ss_pred chHHHH
Q 022367 270 VANLLG 275 (298)
Q Consensus 270 va~lla 275 (298)
+..++.
T Consensus 436 ~~~l~~ 441 (474)
T PRK06388 436 IDGLKQ 441 (474)
T ss_pred HHHHHH
Confidence 866553
No 77
>PLN02541 uracil phosphoribosyltransferase
Probab=98.85 E-value=3.1e-08 Score=89.04 Aligned_cols=113 Identities=21% Similarity=0.250 Sum_probs=90.2
Q ss_pred CeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCCCe-EEE--EeeecCCC-CCEEEEEeCccCchHHHHHHHHHHHH
Q 022367 142 DLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNV-AEV--MNLIGDVK-GKVAVMVDDMIDTAGTISKGAALLHQ 217 (298)
Q Consensus 142 ~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~-~~~--~~~~g~v~-gk~ViIVDDii~TG~Tl~~a~~~Lk~ 217 (298)
+.++|++.+.|+.+...+.+.+.+.....+.-+|+..+. ... ..++.++. +++|+|+||++.||+|+..+++.|++
T Consensus 103 ~i~~V~ILRAGl~m~~g~~~~~P~a~vg~i~~~rd~~t~e~~~yy~kLP~~i~~~~~VlllDpmLATGgS~~~ai~~L~~ 182 (244)
T PLN02541 103 PVAVVPILRAGLVLLEHASSVLPATKTYHLGFVRDEETLQPSMYLNKLPDKFPEGSRVLVVDPMLATGGTIVAAIDELVS 182 (244)
T ss_pred cEEEEeEeCCcHhHHHHHHhhCCCCeeEEEEEEEcccccceEEeeccCchhcCCCCEEEEECcchhhhHHHHHHHHHHHH
Confidence 489999999999999999888876777777777764322 111 14556675 68999999999999999999999999
Q ss_pred cCCC--EEEEEEEeccCCccHHHHhhcCCCCEEEEecCCCC
Q 022367 218 EGAR--EVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPV 256 (298)
Q Consensus 218 ~Ga~--~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tnti~~ 256 (298)
+|+. +|.+++. +.++.+++++.+...+--++|-+|..
T Consensus 183 ~Gv~~~~I~~v~~--ias~~Gl~~i~~~fP~v~I~ta~ID~ 221 (244)
T PLN02541 183 RGASVEQIRVVCA--VAAPPALKKLSEKFPGLHVYAGIIDE 221 (244)
T ss_pred cCCCcccEEEEEE--EECHHHHHHHHHHCcCCEEEEEEECc
Confidence 9997 6777764 67788999998877776677777754
No 78
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=98.73 E-value=6.9e-08 Score=95.36 Aligned_cols=148 Identities=20% Similarity=0.187 Sum_probs=90.4
Q ss_pred HHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEEE-EEeeecC------CC------eEEE-E-eeecCCC
Q 022367 127 PVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRQG------HN------VAEV-M-NLIGDVK 191 (298)
Q Consensus 127 ~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~-~~k~r~~------~~------~~~~-~-~~~g~v~ 191 (298)
..+.+.|.+.. ..+.++|++....|...|..+|+.++ +|+.. +.|.|.. .. .... . .+...++
T Consensus 289 ~~~G~~La~~~-~~~~D~VvpVP~sG~~~A~g~a~~~g-ip~~~~l~kn~~~grtfi~~~q~~r~~~~r~k~~~~~~~~~ 366 (510)
T PRK07847 289 VEIGRRLAREH-PVEADLVIPVPESGTPAAVGYAQESG-IPFGQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREVIR 366 (510)
T ss_pred HHHHHHHHhhC-CCCCeEEEeccCchHHHHHHHHHHhC-CChhhceEeecccccCccCcchhhhhhceeeecCccccccC
Confidence 34566666654 23455777755568999999999998 88733 2332210 00 0111 1 1223479
Q ss_pred CCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEec-CCCCccc-CCCCCeeEEe
Q 022367 192 GKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITN-TIPVSER-NYFPQLTILS 269 (298)
Q Consensus 192 gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tn-ti~~~~~-~~~~ki~~is 269 (298)
||+|+||||+++||.|+.++++.|+++||++|++...-|-+..++.--+.-..-++++..+ |++.-.+ .....+..+|
T Consensus 367 gk~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~ri~sPpi~~pc~yGid~~~~~eLia~~~~~eei~~~igadsl~yls 446 (510)
T PRK07847 367 GKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRISSPPVKWPCFYGIDFASRAELIANGLTVEEIRRSIGADSLGYIS 446 (510)
T ss_pred CCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEECCCCcCCCCcCcCCCCCHHHHHhcCCCHHHHHHHhCCCeEeccC
Confidence 9999999999999999999999999999999999876554444433322211112232222 1111111 2355678888
Q ss_pred chHHHHH
Q 022367 270 VANLLGE 276 (298)
Q Consensus 270 va~lla~ 276 (298)
+..++..
T Consensus 447 ~e~l~~a 453 (510)
T PRK07847 447 LDGMIAA 453 (510)
T ss_pred HHHHHHH
Confidence 8776543
No 79
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=98.48 E-value=1.8e-07 Score=89.41 Aligned_cols=146 Identities=23% Similarity=0.219 Sum_probs=94.2
Q ss_pred HHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEEE-EEeeecCC------C--------eEEEEeeecCCC
Q 022367 127 PVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRQGH------N--------VAEVMNLIGDVK 191 (298)
Q Consensus 127 ~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~-~~k~r~~~------~--------~~~~~~~~g~v~ 191 (298)
..+.+.|.+.. ..+-++|++..-.|.+.|-.+|+.+| +|+.. +-|.|.-. + ..+...+...++
T Consensus 270 ~~mG~~La~e~-~~eaDvVipVPDSg~~aAig~A~~sG-iPy~~GliKNrYvgRTFI~P~q~~R~~~Vr~KLnpvr~~v~ 347 (470)
T COG0034 270 KRMGEKLAEEI-PVEADVVIPVPDSGRPAAIGYARASG-IPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLNPVREVVK 347 (470)
T ss_pred HHHHHHHHHhC-CccccEEEecCCCChHHHHHHHHHhC-CchhhccccccccceeeeCCcHHHHHhhhhhhcCchHHHhC
Confidence 44566666654 33456899999999999999999998 88732 22333210 0 001113345689
Q ss_pred CCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEec-CCCCccc-CCCCCeeEEe
Q 022367 192 GKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITN-TIPVSER-NYFPQLTILS 269 (298)
Q Consensus 192 gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tn-ti~~~~~-~~~~ki~~is 269 (298)
||+|++|||-|-.|.|....+++||++||++|++...-|-...++.--+.-..-+++|..+ ++....+ .....+..+|
T Consensus 348 GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvriasP~i~~Pc~YGID~pt~~eLIA~~~~~eeI~~~IgaDSL~yLs 427 (470)
T COG0034 348 GKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIASPPIRYPCFYGIDMPTREELIAANRTVEEIRKAIGADSLAYLS 427 (470)
T ss_pred CCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEecCCCccCCCccccCCCCHHHHhhCCCCHHHHHHHhCCCceeeec
Confidence 9999999999999999999999999999999999886555444433333322223444333 3221111 2334577788
Q ss_pred chHHH
Q 022367 270 VANLL 274 (298)
Q Consensus 270 va~ll 274 (298)
+..++
T Consensus 428 legL~ 432 (470)
T COG0034 428 LEGLI 432 (470)
T ss_pred HHHHH
Confidence 86654
No 80
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=97.94 E-value=0.00011 Score=68.49 Aligned_cols=116 Identities=20% Similarity=0.214 Sum_probs=85.8
Q ss_pred CCCcccceeeeee-CCCceEEE-eCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeeccCccccccc
Q 022367 1 MGLDLGKIKIKRF-ADGEIYVQ-LQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRK 78 (298)
Q Consensus 1 l~~~~~~~~~~~F-~dGE~~v~-i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~ 78 (298)
||.++..++-.++ ++||.... +.++++|++|+|+..+...-. .++..++++++.||++|.++.+.--
T Consensus 181 Lg~~~~~i~k~r~~~~~~~~~~~~~~~v~g~~vliVDDii~tG~----Tl~~a~~~l~~~ga~~v~~~~th~v------- 249 (308)
T TIGR01251 181 LGCPLAIIDKRRISATNEVEVMNLVGDVEGKDVVIVDDIIDTGG----TIAKAAEILKSAGAKRVIAAATHGV------- 249 (308)
T ss_pred hCCCEEEEEEEecCCCCEEEEEecccccCCCEEEEEccccCCHH----HHHHHHHHHHhcCCCEEEEEEEeee-------
Confidence 4667777777888 78886654 456899999999998866533 5778889999999999999998311
Q ss_pred ccCCCchHHHHHHHHHHHhCCCEEEEEcCCcccccCCCCcccccccchHHHHHHHHhhc
Q 022367 79 TQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKA 137 (298)
Q Consensus 79 ~~~~~~~~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~l~~~~ 137 (298)
..++ .+.+ |.+.|++++++.|.|... .+|+ +...++..+.+++.|....
T Consensus 250 -~~~~-----a~~~-l~~~~~~~iv~tdt~~~~--~~~~-~~~~v~va~~la~~i~~~~ 298 (308)
T TIGR01251 250 -FSGP-----AIER-IANAGVEEVIVTNTIPHE--KHKP-KVSVISVAPLIAEAIRRIH 298 (308)
T ss_pred -cCcH-----HHHH-HHhCCCCEEEEeCCCCcc--ccCC-CcEEEEhHHHHHHHHHHHh
Confidence 1122 2334 445689999999999764 3454 5667888899999997653
No 81
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=97.93 E-value=1.7e-05 Score=74.43 Aligned_cols=134 Identities=25% Similarity=0.237 Sum_probs=83.1
Q ss_pred CCeEEEeeCCChHHHHHHHHHHcCCCCEEE-EEeeecC------CC--------eEEEEeeecCCCCCEEEEEeCccCch
Q 022367 141 DDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRQG------HN--------VAEVMNLIGDVKGKVAVMVDDMIDTA 205 (298)
Q Consensus 141 ~~~viv~p~~Gg~~~a~~la~~L~~~~~~~-~~k~r~~------~~--------~~~~~~~~g~v~gk~ViIVDDii~TG 205 (298)
+-+++++..-.|..-|-.+|...| +|+.- +-|.|.- ++ ..+...+...++||+|+||||-|--|
T Consensus 291 d~DvVi~VPdS~~~aAlgyA~~sG-~py~e~l~rnrYvGRTFI~P~q~iR~~~V~~Kl~~l~~~~~GKrvvlVDDSIVRG 369 (474)
T KOG0572|consen 291 DADVVIPVPDSGTTAALGYAAKSG-LPYQEVLIRNRYVGRTFIEPNQRIRQLGVKKKLGPLRQNFEGKRVVLVDDSIVRG 369 (474)
T ss_pred ccceEEecCCchhHHHHHHHHHhC-CchhhhhhhcccccceecCccHHHHHhhhhhhcccchhhcCCceEEEEecceecc
Confidence 445777777778888999999998 88732 2233321 11 01112455689999999999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEec-CCCCc-ccCCCCCeeEEechHHHH
Q 022367 206 GTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITN-TIPVS-ERNYFPQLTILSVANLLG 275 (298)
Q Consensus 206 ~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tn-ti~~~-~~~~~~ki~~isva~lla 275 (298)
.|....+++||++||++|+.-..-|-...+++--+.-.--+++|... |++.- +...+..+..+|+..|+.
T Consensus 370 tTs~~IVkmlreaGAkeVh~riAsPpi~~pc~yGIdipt~keLIA~~~t~deiae~igadsv~ylsve~Lv~ 441 (474)
T KOG0572|consen 370 TTSSPIVKMLREAGAKEVHIRIASPPIKYPCYYGIDIPTSKELIANKLTVDEIAEHIGADSVAYLSVEGLVD 441 (474)
T ss_pred CchHHHHHHHHHcCCcEEEEEecCCcccccceeecCCCCHHHHHhcCCCHHHHHHHhCCCeeEEeeHHHHHH
Confidence 99999999999999999998775554433332222211112222111 11110 012355677788877654
No 82
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.48 E-value=0.005 Score=57.80 Aligned_cols=136 Identities=13% Similarity=0.150 Sum_probs=93.5
Q ss_pred CCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCCCeEEEEeeecCCCCCEEEEEeCccCc-h---HHHHHHHHHHH
Q 022367 141 DDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDT-A---GTISKGAALLH 216 (298)
Q Consensus 141 ~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDDii~T-G---~Tl~~a~~~Lk 216 (298)
++..+++ ..+.-.+|+.+|+.|+ .++..+..++-..++..+ .+..++.|++|+||-.+... - --+.-.+.+||
T Consensus 4 ~~~~i~~-~~~~~~la~~ia~~lg-~~l~~~~~~~FpdGE~~v-~i~~~vrg~dV~iv~s~~~~~nd~lmelll~~~alr 80 (320)
T PRK02269 4 SDLKLFA-LSSNKELAEKVAQEIG-IELGKSSVRQFSDGEIQV-NIEESIRGHHVFILQSTSSPVNDNLMEILIMVDALK 80 (320)
T ss_pred CCeEEEE-CCCCHHHHHHHHHHhC-CceeeeEEEECCCCCEEE-EECCCCCCCEEEEEecCCCCccchHHHHHHHHHHHH
Confidence 4545554 5667789999999998 888777777766665432 56678999999999876432 1 22455778899
Q ss_pred HcCCCEEEEEEEeccCCcc----------------HHHHhhcCCCCEEEEecCCCCcccCCCC-CeeEEechHHHHHHHH
Q 022367 217 QEGAREVYACSTHAVFSPP----------------AIERLSSGLFQEVIITNTIPVSERNYFP-QLTILSVANLLGETIW 279 (298)
Q Consensus 217 ~~Ga~~V~~~~tH~l~~~~----------------a~~~l~~~~i~~ii~tnti~~~~~~~~~-ki~~isva~lla~~i~ 279 (298)
++||++|.++.- -|... ..+.|+..+++.+++-|-....-+..++ .+.-++.+|++++.++
T Consensus 81 ~~~a~~i~~V~P--Yl~YaRQDr~~~~~e~isak~~a~ll~~~g~d~vit~D~H~~~~~~~f~~p~~~l~~~p~l~~~i~ 158 (320)
T PRK02269 81 RASAESINVVMP--YYGYARQDRKARSREPITSKLVANMLEVAGVDRLLTVDLHAAQIQGFFDIPVDHLMGAPLIADYFD 158 (320)
T ss_pred HhCCCeEEEEEe--ccccchhhcccCCCCCchHHHHHHHHhhcCCCEEEEECCChHHHhccccCCchhhhhHHHHHHHHH
Confidence 999999988873 33221 1233445689999999987432112222 3556889999999997
Q ss_pred HH
Q 022367 280 RV 281 (298)
Q Consensus 280 ~~ 281 (298)
+.
T Consensus 159 ~~ 160 (320)
T PRK02269 159 RR 160 (320)
T ss_pred Hh
Confidence 64
No 83
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.47 E-value=0.0074 Score=56.90 Aligned_cols=136 Identities=12% Similarity=0.107 Sum_probs=94.9
Q ss_pred CCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCCCeEEEEeeecCCCCCEEEEEeCccCc-hHH---HHHHHHHHH
Q 022367 141 DDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDT-AGT---ISKGAALLH 216 (298)
Q Consensus 141 ~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDDii~T-G~T---l~~a~~~Lk 216 (298)
++..++ ...+...+|..+|+.|| .++.-+..++-.+++..+ .+..++.|++|+||-..... ... +...+.+||
T Consensus 20 ~~~~i~-~g~~~~~la~~ia~~lg-~~l~~~~~~~FpDGE~~v-~i~~~vrg~~V~ivqs~~~p~nd~l~eLll~~~alr 96 (330)
T PRK02812 20 NRLRLF-SGSSNPALAQEVARYLG-MDLGPMIRKRFADGELYV-QIQESIRGCDVYLIQPTCAPVNDHLMELLIMVDACR 96 (330)
T ss_pred CCEEEE-ECCCCHHHHHHHHHHhC-CCceeeEEEECCCCCEEE-EeCCCCCCCEEEEECCCCCCccHHHHHHHHHHHHHH
Confidence 344444 46777899999999998 888777776766665432 56678999999999996533 333 345678899
Q ss_pred HcCCCEEEEEEEeccCCc---------------c-HHHHhhcCCCCEEEEecCCCCcccCCC-CCeeEEechHHHHHHHH
Q 022367 217 QEGAREVYACSTHAVFSP---------------P-AIERLSSGLFQEVIITNTIPVSERNYF-PQLTILSVANLLGETIW 279 (298)
Q Consensus 217 ~~Ga~~V~~~~tH~l~~~---------------~-a~~~l~~~~i~~ii~tnti~~~~~~~~-~ki~~isva~lla~~i~ 279 (298)
++||++|.++.- -|.. . ..+.|+..+++.|++-|-....-+..+ -.+..++-++.+++.|+
T Consensus 97 ~~ga~ri~~ViP--Yl~YaRQDr~~~~~e~isak~vA~lL~~~g~d~vitvDlH~~~~~~fF~ipv~nl~~~~~l~~~i~ 174 (330)
T PRK02812 97 RASARQITAVIP--YYGYARADRKTAGRESITAKLVANLITKAGADRVLAMDLHSAQIQGYFDIPCDHVYGSPVLLDYLA 174 (330)
T ss_pred HhCCceEEEEEe--cccccccccccCCCCCchHHHHHHHHHhcCCCEEEEEECCchHHcCccCCCceeeeChHHHHHHHH
Confidence 999999998873 2221 1 223345568999999998643212222 24678899999999986
Q ss_pred HH
Q 022367 280 RV 281 (298)
Q Consensus 280 ~~ 281 (298)
+.
T Consensus 175 ~~ 176 (330)
T PRK02812 175 SK 176 (330)
T ss_pred hc
Confidence 63
No 84
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=97.28 E-value=0.011 Score=55.10 Aligned_cols=130 Identities=21% Similarity=0.181 Sum_probs=89.4
Q ss_pred eCCChHHHHHHHHHHcCCCCEEEEEeeecCCCeEEEEeeecCCCCCEEEEEeCccCchHHH---HHHHHHHHHcCCCEEE
Q 022367 148 PDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTI---SKGAALLHQEGAREVY 224 (298)
Q Consensus 148 p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDDii~TG~Tl---~~a~~~Lk~~Ga~~V~ 224 (298)
...+.-.+|..+|+.|| .++..+...+-..++..+ .+..++.|++|+||-....--..+ .-.+++||++||++|.
T Consensus 7 ~~~~~~~la~~ia~~lg-~~~~~~~~~~F~dGE~~v-~i~~~v~g~~V~ivqs~~~~n~~l~elll~~~alr~~~a~~i~ 84 (301)
T PRK07199 7 ALPGNEAAAGRLAAALG-VEVGRIELHRFPDGESYV-RLDSPVAGRTVVLVCSLDRPDEKLLPLLFAAEAARELGARRVG 84 (301)
T ss_pred ECCCCHHHHHHHHHHhC-CceeeeEEEECCCCCEEE-EECCCCCCCEEEEECCCCCCcHHHHHHHHHHHHHHHcCCCeEE
Confidence 34666889999999998 898877777766665433 456789999999999876432323 3466789999999999
Q ss_pred EEEEeccCCc---------------cHHHHhhcCCCCEEEEecCCC----CcccCCCCCeeEEechHHHHHHHHHH
Q 022367 225 ACSTHAVFSP---------------PAIERLSSGLFQEVIITNTIP----VSERNYFPQLTILSVANLLGETIWRV 281 (298)
Q Consensus 225 ~~~tH~l~~~---------------~a~~~l~~~~i~~ii~tnti~----~~~~~~~~ki~~isva~lla~~i~~~ 281 (298)
++.. -|.. ...-++-+++++.|++-|-.. ..++...-.+.-++..+.+++.|++.
T Consensus 85 ~ViP--Y~~YaRqDr~~~~ge~isak~vA~ll~~~~d~vit~DlH~~~~~~~~~~f~ip~~nl~~~~~la~~l~~~ 158 (301)
T PRK07199 85 LVAP--YLAYMRQDIAFHPGEAISQRHFARLLSGSFDRLVTVDPHLHRYPSLSEVYPIPAVVLSAAPAIAAWIRAH 158 (301)
T ss_pred EEee--cccccccccccCCCCCccHHHHHHHHHhhcCeEEEEeccchhhHHhcCcccCCccccchHHHHHHHHHhc
Confidence 8873 3322 222333335799999999763 21221112345688899999999764
No 85
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.26 E-value=0.018 Score=54.10 Aligned_cols=134 Identities=12% Similarity=0.092 Sum_probs=92.3
Q ss_pred EEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCCCeEEEEeeecCCCCCEEEEEeCccCc-hHHH---HHHHHHHHHcC
Q 022367 144 VVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDT-AGTI---SKGAALLHQEG 219 (298)
Q Consensus 144 viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDDii~T-G~Tl---~~a~~~Lk~~G 219 (298)
+++-...+.-.+|..+|+.|+ .++..+..++-..++..+ .+..++.|++|+||-..... -..+ ...+.+||++|
T Consensus 10 ~~i~~~~~~~~la~~ia~~lg-~~l~~~~~~~FpdGE~~v-~i~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~alr~~~ 87 (323)
T PRK02458 10 IKLFSLNSNLEIAEKIAQAAG-VPLGKLSSRQFSDGEIMI-NIEESVRGDDIYIIQSTSFPVNDHLWELLIMIDACKRAS 87 (323)
T ss_pred eEEEECCCCHHHHHHHHHHhC-CceeeeEEEECCCCCEEE-EecCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcC
Confidence 444455677889999999998 888877777766665332 55678999999999876432 2233 34567899999
Q ss_pred CCEEEEEEEeccCCcc----------------HHHHhhcCCCCEEEEecCCCCc-ccCCCCCeeEEechHHHHHHHHHH
Q 022367 220 AREVYACSTHAVFSPP----------------AIERLSSGLFQEVIITNTIPVS-ERNYFPQLTILSVANLLGETIWRV 281 (298)
Q Consensus 220 a~~V~~~~tH~l~~~~----------------a~~~l~~~~i~~ii~tnti~~~-~~~~~~ki~~isva~lla~~i~~~ 281 (298)
|++|.++. |-|... ..+.|+..+++.|++-|-.... +....-.+..++..|++++.+++.
T Consensus 88 a~~i~lVi--PYl~YaRQDr~~~~ge~isak~~a~lL~~~g~d~vitvD~H~~~i~~~F~~p~~nl~~~p~~~~~l~~~ 164 (323)
T PRK02458 88 ANTVNVVL--PYFGYARQDRIAKPREPITAKLVANMLVKAGVDRVLTLDLHAVQVQGFFDIPVDNLFTVPLFAKHYCKK 164 (323)
T ss_pred CceEEEEE--eccccchhhcccCCCCCchHHHHHHHHhhcCCCeEEEEecCcHHhhccccCCceEEEEHHHHHHHHHHh
Confidence 99999887 333221 1223445689999999877432 111112467889999999999764
No 86
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=97.19 E-value=0.01 Score=57.76 Aligned_cols=135 Identities=9% Similarity=0.123 Sum_probs=93.2
Q ss_pred CCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCCCeEEEEeeecCCCCCEEEEEeCccCc-hHH---HHHHHHHHH
Q 022367 141 DDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDT-AGT---ISKGAALLH 216 (298)
Q Consensus 141 ~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDDii~T-G~T---l~~a~~~Lk 216 (298)
++.+++ ...+...+|+.+|+.|| .++.-+..+|-.+++..+ .+..++.|++|+||-..... -.. +.-.+.+||
T Consensus 118 ~~m~I~-sgs~~~~LA~~IA~~Lg-~~l~~~~~~rFpDGE~~V-ri~e~VrG~dV~IVqS~~~pvNd~LmELLllidAlr 194 (439)
T PTZ00145 118 ENAILF-SGSSNPLLSKNIADHLG-TILGRVHLKRFADGEVSM-QFLESIRGKDVYIIQPTCPPVNENLIELLLMISTCR 194 (439)
T ss_pred CCeEEE-ECCCCHHHHHHHHHHhC-CCceeeEEEECCCCCEEE-EECCCcCCCeEEEEecCCCCCcHHHHHHHHHHHHHH
Confidence 344555 56677899999999998 898887777766666433 46678999999999986543 222 334678899
Q ss_pred HcCCCEEEEEEEeccCCc----------------cHHHHhhcCCCCEEEEecCCCCcccCCC---CCeeEEechHHHHHH
Q 022367 217 QEGAREVYACSTHAVFSP----------------PAIERLSSGLFQEVIITNTIPVSERNYF---PQLTILSVANLLGET 277 (298)
Q Consensus 217 ~~Ga~~V~~~~tH~l~~~----------------~a~~~l~~~~i~~ii~tnti~~~~~~~~---~ki~~isva~lla~~ 277 (298)
++||++|.++.- -|.. -..+.|+..+++.|++-|-....-+..+ -.+.-++.++++++.
T Consensus 195 ~agAkrItlViP--Yl~YaRQDR~~~~gepIsak~vA~lL~~~G~d~VitvDlHs~~i~~fF~~~iPvdnl~a~~~~a~~ 272 (439)
T PTZ00145 195 RASAKKITAVIP--YYGYARQDRKLSSRVPISAADVARMIEAMGVDRVVAIDLHSGQIQGFFGPRVPVDNLEAQLIGLDY 272 (439)
T ss_pred HhccCeEEEEee--cccchheecccCCCCChhHHHHHHHHHHcCCCeEEEEecChHHHHhhcCCCcccccccccHHHHHH
Confidence 999999999883 2221 1223345568999999987643211122 235566778889998
Q ss_pred HHH
Q 022367 278 IWR 280 (298)
Q Consensus 278 i~~ 280 (298)
|+.
T Consensus 273 i~~ 275 (439)
T PTZ00145 273 FTK 275 (439)
T ss_pred Hhh
Confidence 865
No 87
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.18 E-value=0.026 Score=53.25 Aligned_cols=136 Identities=11% Similarity=0.107 Sum_probs=92.6
Q ss_pred CCCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCCCeEEEEeeecCCCCCEEEEEeCccCc-hHH---HHHHHHHH
Q 022367 140 SDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDT-AGT---ISKGAALL 215 (298)
Q Consensus 140 ~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDDii~T-G~T---l~~a~~~L 215 (298)
.++..++ ...+...+|..+|+.|+ .++.-+..+|-..++..+ .+..++.|++|+||-++... ... +...+.+|
T Consensus 7 ~~~~~i~-~~~~~~~La~~ia~~lg-~~l~~~~~~~FpdGE~~v-~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~al 83 (332)
T PRK00553 7 KSNHVIF-SLSKAKKLVDSICRKLS-MKPGEIVIQKFADGETYI-RFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDAL 83 (332)
T ss_pred CCCeEEE-ECCCCHHHHHHHHHHhC-CceeeeEEEECCCCCEEE-EECCCCCCCEEEEEcCCCCCCchHHHHHHHHHHHH
Confidence 3444444 44666889999999998 898877777766665432 56678999999999887543 223 34567789
Q ss_pred HHcCCCEEEEEEEeccCCcc----------------HHHHhhcCCCCEEEEecCCCCc-ccCCCCCeeEEechHHHHHHH
Q 022367 216 HQEGAREVYACSTHAVFSPP----------------AIERLSSGLFQEVIITNTIPVS-ERNYFPQLTILSVANLLGETI 278 (298)
Q Consensus 216 k~~Ga~~V~~~~tH~l~~~~----------------a~~~l~~~~i~~ii~tnti~~~-~~~~~~ki~~isva~lla~~i 278 (298)
|++||++|.++.- -|... ..+.|+..+++.|++-|-.... +.-..-.+.-++-.++|++.+
T Consensus 84 r~~~a~~i~~ViP--Yl~YaRQDr~~~~~e~isak~vA~ll~~~g~d~vit~DlH~~~i~~~F~ipv~~l~a~~~~~~~~ 161 (332)
T PRK00553 84 KRGSAKSITAILP--YYGYARQDRKTAGREPITSKLVADLLTKAGVTRVTLTDIHSDQTQGFFDIPVDILRTYHVFLSRV 161 (332)
T ss_pred HHcCCCeEEEEee--ccccchhhcccCCCCCccHHHHHHHHHhcCCCEEEEEeCChHHHHhhcCCCcceeechHHHHHHH
Confidence 9999999998873 33221 2233455689999999977432 111112355678889999988
Q ss_pred HH
Q 022367 279 WR 280 (298)
Q Consensus 279 ~~ 280 (298)
+.
T Consensus 162 ~~ 163 (332)
T PRK00553 162 LE 163 (332)
T ss_pred HH
Confidence 65
No 88
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.18 E-value=0.01 Score=55.30 Aligned_cols=123 Identities=11% Similarity=0.067 Sum_probs=85.9
Q ss_pred HHHHHHHHcCCCCEEEEEeeecCCCeEEEEeeecCCCCCEEEEEeCccCc-hHH---HHHHHHHHHHcCCCEEEEEEEec
Q 022367 155 RARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDT-AGT---ISKGAALLHQEGAREVYACSTHA 230 (298)
Q Consensus 155 ~a~~la~~L~~~~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDDii~T-G~T---l~~a~~~Lk~~Ga~~V~~~~tH~ 230 (298)
+|+.+|+.|+ .++.-+..++-.+++..+ .+..+++|++|+||--.... ... +...+.++|++||++|.++. |
T Consensus 1 la~~ia~~l~-~~l~~~~~~~F~DGE~~v-ri~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~a~~i~~Vi--P 76 (304)
T PRK03092 1 LAEEVAKELG-VEVTPTTAYDFANGEIYV-RFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRASAKRITVVL--P 76 (304)
T ss_pred CHHHHHHHhC-CceeeeEEEECCCCCEEE-EECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEE--e
Confidence 3678899998 888777777766665432 56678999999998876543 233 34567889999999999887 3
Q ss_pred cCCcc----------------HHHHhhcCCCCEEEEecCCCCcccC-CCCCeeEEechHHHHHHHHHH
Q 022367 231 VFSPP----------------AIERLSSGLFQEVIITNTIPVSERN-YFPQLTILSVANLLGETIWRV 281 (298)
Q Consensus 231 l~~~~----------------a~~~l~~~~i~~ii~tnti~~~~~~-~~~ki~~isva~lla~~i~~~ 281 (298)
-|... ..+.|+..+++.|++-|-....-+. ..-.+.-++.+++|++.|+..
T Consensus 77 Yl~YaRQDr~~~~~e~isak~va~lL~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~la~~i~~~ 144 (304)
T PRK03092 77 FYPYARQDKKHRGREPISARLVADLFKTAGADRIMTVDLHTAQIQGFFDGPVDHLFAMPLLADYVRDK 144 (304)
T ss_pred cccccccccccCCCCCccHHHHHHHHHhcCCCeEEEEecChHHHHhhcCCCeeeEechHHHHHHHHHh
Confidence 33221 2233555689999999987432121 222467899999999999764
No 89
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.13 E-value=0.022 Score=53.22 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=88.6
Q ss_pred CCChHHHHHHHHHHcCCCCEEEEEeeecCCCeEEEEeeecCCCCCEEEEEeCccCc-hHH---HHHHHHHHHHcCCCEEE
Q 022367 149 DVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDT-AGT---ISKGAALLHQEGAREVY 224 (298)
Q Consensus 149 ~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDDii~T-G~T---l~~a~~~Lk~~Ga~~V~ 224 (298)
..+...+|..+|+.|| .++..+..++-..++..+ .+..++.|++|+||=..... -.. +...++++|++||++|.
T Consensus 6 ~~~~~~la~~ia~~lg-~~~~~~~~~~FpdGE~~v-ri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~ga~~i~ 83 (309)
T PRK01259 6 GNANPELAEKIAKYLG-IPLGKASVGRFSDGEISV-EINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRASAGRIT 83 (309)
T ss_pred CCCCHHHHHHHHHHhC-CceeeeEEEECCCCCEEE-EeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHHHHHHcCCceEE
Confidence 4566789999999998 888777666655555332 45678999999999775322 223 44567889999999998
Q ss_pred EEEEeccCCcc----------------HHHHhhcCCCCEEEEecCCCCcccC-CCCCeeEEechHHHHHHHHHH
Q 022367 225 ACSTHAVFSPP----------------AIERLSSGLFQEVIITNTIPVSERN-YFPQLTILSVANLLGETIWRV 281 (298)
Q Consensus 225 ~~~tH~l~~~~----------------a~~~l~~~~i~~ii~tnti~~~~~~-~~~ki~~isva~lla~~i~~~ 281 (298)
++.- -|... -.+.|+..++|.|++-|-....-+. ..-.+..++-.|++++.|++.
T Consensus 84 lViP--Yl~YsRQDr~~~~ge~isak~~a~lL~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~l~~~i~~~ 155 (309)
T PRK01259 84 AVIP--YFGYARQDRKARSRVPITAKLVANLLETAGADRVLTMDLHADQIQGFFDIPVDNLYGSPILLEDIKQK 155 (309)
T ss_pred EEee--ccccchhhhhhccCCCchHHHHHHHHhhcCCCEEEEEcCChHHHcCcCCCCceeeeecHHHHHHHHhc
Confidence 8873 33221 1223444589999999987432121 122467788899999999754
No 90
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=97.12 E-value=0.0038 Score=53.92 Aligned_cols=103 Identities=15% Similarity=0.148 Sum_probs=71.3
Q ss_pred ccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCC-C--e-EE-----------EEeee
Q 022367 123 VYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGH-N--V-AE-----------VMNLI 187 (298)
Q Consensus 123 l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~-~--~-~~-----------~~~~~ 187 (298)
+.....||+.+.+.. ..+.+++|-..-+.-+...+++.++. ...|+...|..- + . .+ .....
T Consensus 37 ~~~~~~La~~~~~~~--~~~~lvIGfAETATgLG~~V~~~~~~-~~~ylhTTR~~v~~~~~~~~F~E~HSHAt~h~ly~~ 113 (191)
T PF15609_consen 37 RDAGRLLAAQVPEAL--PGPVLVIGFAETATGLGHGVFDALGA-ACLYLHTTREPVPGVPPLLEFEEEHSHATDHLLYPP 113 (191)
T ss_pred HHHHHHHHHHHHHhC--CCCeEEEEEhHHHHHHHHHHHHHhhh-ccceeeeccccCCCCccceeeeccccccccceecCC
Confidence 335567777777653 45689999999999999999999873 335666655321 1 0 00 01111
Q ss_pred --cCC-CCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEE
Q 022367 188 --GDV-KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACST 228 (298)
Q Consensus 188 --g~v-~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~t 228 (298)
..+ ..+.+++|||=++||.|+..+++.|++.-+.+=+++++
T Consensus 114 ~~~~l~~~~~lVLVDDEiSTG~T~lnli~al~~~~p~~~yvvas 157 (191)
T PF15609_consen 114 DPDLLRNARTLVLVDDEISTGNTFLNLIRALHAKYPRKRYVVAS 157 (191)
T ss_pred ChHHhcCCCCEEEEecCccchHHHHHHHHHHHHhCCCceEEEEE
Confidence 112 46799999999999999999999999987766555554
No 91
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=97.07 E-value=0.026 Score=52.52 Aligned_cols=129 Identities=19% Similarity=0.178 Sum_probs=92.6
Q ss_pred CChHHHHHHHHHHcCCCCEEEEEeeecCCCeEEEEeeecCCCCCEEEEEeCccCchH-HHHH---HHHHHHHcCCCEEEE
Q 022367 150 VGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAG-TISK---GAALLHQEGAREVYA 225 (298)
Q Consensus 150 ~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDDii~TG~-Tl~~---a~~~Lk~~Ga~~V~~ 225 (298)
...-.+|+.+|+.|+ .++.-+..+|-..++..+ .+..++.|++|.|+........ .+.+ .+.+||++||++|.+
T Consensus 11 ~s~~~La~~ia~~l~-~~l~~~~~~rF~DGE~~V-~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA~k~asA~~It~ 88 (314)
T COG0462 11 SSNPELAEKIAKRLG-IPLGKVEVKRFPDGEIYV-RIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDALKRASAKRITA 88 (314)
T ss_pred CCCHHHHHHHHHHhC-CCcccceeEEcCCCcEEE-EecccccCCeEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCceEEE
Confidence 556678999999998 888777777766665433 5677999999999988877444 3433 567899999999999
Q ss_pred EEEeccCCc---c-------------HHHHhhcCCCCEEEEecCCCCc-ccCCCCCeeEEechHHHHHHHHHHH
Q 022367 226 CSTHAVFSP---P-------------AIERLSSGLFQEVIITNTIPVS-ERNYFPQLTILSVANLLGETIWRVH 282 (298)
Q Consensus 226 ~~tH~l~~~---~-------------a~~~l~~~~i~~ii~tnti~~~-~~~~~~ki~~isva~lla~~i~~~~ 282 (298)
+. |-|.. + ..+.|+.+|+++|++.|-.... ++-..-.+.-+.-+|++++.++...
T Consensus 89 Vi--PY~gYARQDk~~~~repIsaklvA~lL~~aG~drv~TvDlH~~qiqgfFdipvdnl~a~p~l~~~~~~~~ 160 (314)
T COG0462 89 VI--PYFGYARQDKAFKPREPISAKLVANLLETAGADRVLTVDLHAPQIQGFFDIPVDNLYAAPLLAEYIREKY 160 (314)
T ss_pred Ee--ecchhhccCcccCCCCCEeHHHHHHHHHHcCCCeEEEEcCCchhhcccCCCccccccchHHHHHHHHHhc
Confidence 88 44432 1 1234566799999999987442 2222224556678899999998875
No 92
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.06 E-value=0.036 Score=52.07 Aligned_cols=138 Identities=14% Similarity=0.137 Sum_probs=91.7
Q ss_pred CCeEEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCCCeEEEEeeecCCCCCEEEEEeCccCch-HH---HHHHHHHHH
Q 022367 141 DDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTA-GT---ISKGAALLH 216 (298)
Q Consensus 141 ~~~viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDDii~TG-~T---l~~a~~~Lk 216 (298)
++.+++ ...+.-.+|+.+|+.|| .++..+..++-..++..+ .+..++.|++|+||=...... .. +.-.+.+||
T Consensus 5 ~~~~i~-~g~~~~~La~~ia~~lg-~~l~~~~~~~FpdGE~~v-~i~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~alr 81 (319)
T PRK04923 5 RNLLVF-SGNANKPLAQSICKELG-VRMGKALVTRFSDGEVQV-EIEESVRRQEVFVIQPTCAPSAENLMELLVLIDALK 81 (319)
T ss_pred CceEEE-ECCCCHHHHHHHHHHhC-CceeeeEEEECCCCCEEE-EECCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHH
Confidence 444444 45666889999999998 888777777766665433 566788999999997654321 22 344677899
Q ss_pred HcCCCEEEEEEEec-------cC-------Ccc-HHHHhhcCCCCEEEEecCCCCcccCC-CCCeeEEechHHHHHHHHH
Q 022367 217 QEGAREVYACSTHA-------VF-------SPP-AIERLSSGLFQEVIITNTIPVSERNY-FPQLTILSVANLLGETIWR 280 (298)
Q Consensus 217 ~~Ga~~V~~~~tH~-------l~-------~~~-a~~~l~~~~i~~ii~tnti~~~~~~~-~~ki~~isva~lla~~i~~ 280 (298)
++||++|.++.-+- .| +-. ..+.|+..++++|++-|-....-+.. .-.+.-++-+++|++.|.+
T Consensus 82 ~~~a~~i~~ViPYl~YaRQDr~~~~~~~~isak~va~ll~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~l~~~i~~ 161 (319)
T PRK04923 82 RASAASVTAVIPYFGYSRQDRRMRSSRVPITAKVAAKMISAMGADRVLTVDLHADQIQGFFDVPVDNVYASPLLLADIWR 161 (319)
T ss_pred HcCCcEEEEEeeccccccccccccCCCCCccHHHHHHHHHhcCCCEEEEEeCChHHHHhhcCCCceeeeChHHHHHHHHH
Confidence 99999999887321 11 111 12334456899999999874321111 1235678889999999965
Q ss_pred H
Q 022367 281 V 281 (298)
Q Consensus 281 ~ 281 (298)
.
T Consensus 162 ~ 162 (319)
T PRK04923 162 A 162 (319)
T ss_pred h
Confidence 4
No 93
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=96.81 E-value=0.037 Score=44.20 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=56.6
Q ss_pred EeeCCChHHHHHHHHHHcCCCCEEEEEeeecCCCeEEEEeeecCCCCCEEEEEeCccCc-hHH---HHHHHHHHHHcCCC
Q 022367 146 VSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDT-AGT---ISKGAALLHQEGAR 221 (298)
Q Consensus 146 v~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDDii~T-G~T---l~~a~~~Lk~~Ga~ 221 (298)
+-...+.-.+|+.+++.|+ .++.-+.-++-.+++..+ .+.+++.|++|+||-.+... -.. +.-.++++|+.||+
T Consensus 3 I~~g~~~~~La~~ia~~L~-~~~~~~~~~~F~dGE~~v-~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a~ 80 (116)
T PF13793_consen 3 IFSGSSSQDLAERIAEALG-IPLGKVETKRFPDGETYV-RIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGAK 80 (116)
T ss_dssp EEESSSGHHHHHHHHHHTT-S-EE-EEEEE-TTS-EEE-EESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTBS
T ss_pred EEECCCCHHHHHHHHHHhC-CceeeeEEEEcCCCCEEE-EecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCCc
Confidence 4456677889999999998 888777766665665433 56778999999999998865 222 34567889999999
Q ss_pred EEEEEEEeccCCc
Q 022367 222 EVYACSTHAVFSP 234 (298)
Q Consensus 222 ~V~~~~tH~l~~~ 234 (298)
+|.++. |-|..
T Consensus 81 ~i~~Vi--PYl~Y 91 (116)
T PF13793_consen 81 RITLVI--PYLPY 91 (116)
T ss_dssp EEEEEE--SS-TT
T ss_pred EEEEec--cchhh
Confidence 999987 55544
No 94
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=96.80 E-value=0.035 Score=51.75 Aligned_cols=124 Identities=13% Similarity=0.091 Sum_probs=85.4
Q ss_pred HHHHHHHHHcCCCCEEEEEeeecCCCeEEEEeeecCCCCCEEEEEeCccCc-hHH---HHHHHHHHHHcCCCEEEEEEEe
Q 022367 154 ARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDT-AGT---ISKGAALLHQEGAREVYACSTH 229 (298)
Q Consensus 154 ~~a~~la~~L~~~~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDDii~T-G~T---l~~a~~~Lk~~Ga~~V~~~~tH 229 (298)
.+|..+|+.|+ .++..+..++-..++..+ .+..++.|++|+||-..... -.. +...+++||++||++|.++.-
T Consensus 2 ~lA~~ia~~lg-~~l~~~~~~~FpdGE~~v-~i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~a~~i~~ViP- 78 (302)
T PLN02369 2 ALSQEIACYLG-LELGKITIKRFADGEIYV-QLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKRITAVIP- 78 (302)
T ss_pred hHHHHHHHHhC-CceeeeEEEECCCCCEEE-EECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcCCCeEEEEee-
Confidence 47889999998 888877777766666433 45678999999999996532 222 345678899999999988873
Q ss_pred ccCCc---------------c-HHHHhhcCCCCEEEEecCCCCcccCCCC-CeeEEechHHHHHHHHHH
Q 022367 230 AVFSP---------------P-AIERLSSGLFQEVIITNTIPVSERNYFP-QLTILSVANLLGETIWRV 281 (298)
Q Consensus 230 ~l~~~---------------~-a~~~l~~~~i~~ii~tnti~~~~~~~~~-ki~~isva~lla~~i~~~ 281 (298)
-|.. . ..+.|+..+++.|++-|-....-+..++ .+.-++.+|.+++.|...
T Consensus 79 -Yl~YsRQDr~~~~~e~isak~va~lL~~~g~d~vi~vDlHs~~i~~~F~ip~~~l~~~~~~~~~i~~~ 146 (302)
T PLN02369 79 -YFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASK 146 (302)
T ss_pred -cccccccccccCCCCCchHHHHHHHHHhcCCCEEEEEECCchHHhhccCCceecccchHHHHHHHHHh
Confidence 2221 1 2233455689999988876432122222 246688889999999764
No 95
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.73 E-value=0.11 Score=48.11 Aligned_cols=127 Identities=21% Similarity=0.253 Sum_probs=86.7
Q ss_pred CCChHHHHHHHHHHcCCCCEEEEEeeecCCCeEEEEeeecCCCCCEEEEEeCccCchHHH---HHHHHHHHHcCCCEEEE
Q 022367 149 DVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTI---SKGAALLHQEGAREVYA 225 (298)
Q Consensus 149 ~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDDii~TG~Tl---~~a~~~Lk~~Ga~~V~~ 225 (298)
..+...+|..+|+.|+ .++..+..++-..++..+ .+..++.|++|+|+-..-+-...+ ...++.||++||++|.+
T Consensus 5 ~~~~~~la~~ia~~l~-~~~~~~~~~~FpdGE~~v-~i~~~v~g~~v~i~~~~~~~~d~l~ell~~~~alr~~ga~~i~~ 82 (285)
T PRK00934 5 GSASQLLASEVARLLN-TELALVETKRFPDGELYV-RILGEIDGEDVVIISTTYPQDENLVELLLLIDALRDEGAKSITL 82 (285)
T ss_pred CCCCHHHHHHHHHHHC-CceEeeEEEECCCCCEEE-EECCCcCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCCeEEE
Confidence 3455789999999998 898888877776666433 456789999999988754333323 34678899999999998
Q ss_pred EEEeccCCc---------------cHH-HHhhcCCCCEEEEecCCCCcccCCC-CCeeEEechHHHHHHHHH
Q 022367 226 CSTHAVFSP---------------PAI-ERLSSGLFQEVIITNTIPVSERNYF-PQLTILSVANLLGETIWR 280 (298)
Q Consensus 226 ~~tH~l~~~---------------~a~-~~l~~~~i~~ii~tnti~~~~~~~~-~ki~~isva~lla~~i~~ 280 (298)
+. |-|.. ... +.|+..+ +.|++-|-....-+..+ -.+.-++.++.||+.|+.
T Consensus 83 v~--PY~~YaRqDr~~~~ge~isak~~a~ll~~~~-d~vitvD~H~~~~~~~f~~~~~~l~a~~~la~~i~~ 151 (285)
T PRK00934 83 VI--PYLGYARQDKRFKPGEPISARAIAKIISAYY-DRIITINIHEPSILEFFPIPFINLDAAPLIAEYIGD 151 (285)
T ss_pred Ee--cCCcccccccccCCCCCccHHHHHHHHHHhc-CEEEEEcCChHHHcCcCCCcEeEeecHHHHHHHHHh
Confidence 87 33322 122 2244445 99999888743211111 136678889999999954
No 96
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=96.66 E-value=0.12 Score=48.74 Aligned_cols=136 Identities=16% Similarity=0.115 Sum_probs=89.8
Q ss_pred EEEeeCCChHHHHHHHHHHc-CCCCEEEEEeeecCCCeEEEE-eeecCCCCCEEEEEeCccCchHHHHH---HHHHHHHc
Q 022367 144 VVVSPDVGGVARARAFAKKL-SDAPLAIVDKRRQGHNVAEVM-NLIGDVKGKVAVMVDDMIDTAGTISK---GAALLHQE 218 (298)
Q Consensus 144 viv~p~~Gg~~~a~~la~~L-~~~~~~~~~k~r~~~~~~~~~-~~~g~v~gk~ViIVDDii~TG~Tl~~---a~~~Lk~~ 218 (298)
+++-...+.-.+|+.+|+.+ + .++..+..++-.+++.++. ....++.|++|+||=-.... ..+.+ ++..|+++
T Consensus 17 ~~i~~g~~~~~LA~~ia~~l~g-~~l~~~~~~~FpDGE~~v~v~~~~~vrg~~V~ivqs~~~p-d~lmELLl~~dAlr~~ 94 (326)
T PLN02297 17 VHLFYCEETEELARKIAAESDA-IELGSINWRKFPDGFPNLFINNAHGIRGQHVAFLASFSSP-AVIFEQLSVIYALPKL 94 (326)
T ss_pred eEEEECCCCHHHHHHHHHHhCC-CceeeeEEEECCCCCEEEEEcCCCCcCCCeEEEECCCCCC-hHHHHHHHHHHHHHHc
Confidence 44445567788999999986 6 8888888777666654432 34568999999999876544 44443 56779999
Q ss_pred CCCEEEEEEEec-------cCCcc------HH-HHhhc-----CCCCEEEEecCCCCcccCCCC-Cee--EEechHHHHH
Q 022367 219 GAREVYACSTHA-------VFSPP------AI-ERLSS-----GLFQEVIITNTIPVSERNYFP-QLT--ILSVANLLGE 276 (298)
Q Consensus 219 Ga~~V~~~~tH~-------l~~~~------a~-~~l~~-----~~i~~ii~tnti~~~~~~~~~-ki~--~isva~lla~ 276 (298)
||++|.++.-+- .|.++ .. +.|+. .+++.|++-|-....-+..++ .+. .++.+|.|++
T Consensus 95 ga~~i~~ViPY~~YaRQDr~~~~ge~isak~vA~ll~~~~~~~~g~d~vitvDlH~~~~~~fF~~~~~~l~l~a~~~l~~ 174 (326)
T PLN02297 95 FVASFTLVLPFFPTGTSERVEREGDVATAFTLARILSNIPISRGGPTSLVIFDIHALQERFYFGDNVLPCFESGIPLLKK 174 (326)
T ss_pred CCCEEEEEeeCChhhcCCCCCCCCCCchHHHHHHHHhcccccccCCCEEEEEeCCChHHCCccCCcccchhhccHHHHHH
Confidence 999999988321 11111 12 33444 478999999877432112221 222 2377899999
Q ss_pred HHHHH
Q 022367 277 TIWRV 281 (298)
Q Consensus 277 ~i~~~ 281 (298)
.|+..
T Consensus 175 ~i~~~ 179 (326)
T PLN02297 175 RLQQL 179 (326)
T ss_pred HHHhc
Confidence 99764
No 97
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=96.54 E-value=0.11 Score=50.03 Aligned_cols=135 Identities=13% Similarity=0.099 Sum_probs=87.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHc---------------C----CCC--EEEEEeeecCCCeEEEEeeecCCCCCEEEEEeC
Q 022367 142 DLVVVSPDVGGVARARAFAKKL---------------S----DAP--LAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDD 200 (298)
Q Consensus 142 ~~viv~p~~Gg~~~a~~la~~L---------------~----~~~--~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDD 200 (298)
+..+++ ..++-.+|+.+|+.| + +.+ +.-+..++-..++..+ .+..++.|++|+||-+
T Consensus 8 ~~~i~~-~~~~~~la~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~FpDGE~~v-ri~~~Vrg~dV~ivqs 85 (382)
T PRK06827 8 SLGIIA-LPSCRELADKVDEHLVRIRERKENENIESLAFKGYSRESYLIPAKFIRFSNGEAKG-EILESVRGKDIYILQD 85 (382)
T ss_pred ceEEEE-CCCCHHHHHHHHHHHHHhhhhccccccccccccccCCcceeeeeEEEECCCCCEEE-EECCCCCCCeEEEEec
Confidence 334444 566778888898888 2 133 5555555555555322 5667899999999999
Q ss_pred ccC---------------chHHHHH---HHHHHHHcCCCEEEEEEEeccCCcc---------------HHHHhhcCCCCE
Q 022367 201 MID---------------TAGTISK---GAALLHQEGAREVYACSTHAVFSPP---------------AIERLSSGLFQE 247 (298)
Q Consensus 201 ii~---------------TG~Tl~~---a~~~Lk~~Ga~~V~~~~tH~l~~~~---------------a~~~l~~~~i~~ 247 (298)
+.. .-..+.+ .+.+|| +||++|.++.- -|... ..+.|+..+++.
T Consensus 86 ~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~ViP--Y~~YaRQDr~~~~e~itak~vA~lL~~~G~d~ 162 (382)
T PRK06827 86 VGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVIMP--FLYESRQHKRKGRESLDCALALQELEELGVDN 162 (382)
T ss_pred CCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEEEee--cccccccccccCCCCccHHHHHHHHHHcCCCe
Confidence 752 2333444 778899 99999998873 33321 123344568999
Q ss_pred EEEecCCCCcccCCC--CCeeEEechHHHHHHHHHH
Q 022367 248 VIITNTIPVSERNYF--PQLTILSVANLLGETIWRV 281 (298)
Q Consensus 248 ii~tnti~~~~~~~~--~ki~~isva~lla~~i~~~ 281 (298)
|++-|-....-+..+ ..+.-++-++.+++.++..
T Consensus 163 vitvDlHs~~i~~~F~~~pvdnl~a~~~l~~~i~~~ 198 (382)
T PRK06827 163 IITFDAHDPRIENAIPLMGFENLYPSYQIIKALLKN 198 (382)
T ss_pred EEEecCChHHhcccCCCCCcCCcCchHHHHHHHHHh
Confidence 999998743212222 2466678888899888653
No 98
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=94.81 E-value=0.12 Score=44.80 Aligned_cols=72 Identities=14% Similarity=0.297 Sum_probs=49.6
Q ss_pred eeecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCC-EEEEEEEeccCCc-cHHHHhhcCCCC-EEEEecCCCCcc
Q 022367 185 NLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAR-EVYACSTHAVFSP-PAIERLSSGLFQ-EVIITNTIPVSE 258 (298)
Q Consensus 185 ~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~-~V~~~~tH~l~~~-~a~~~l~~~~i~-~ii~tnti~~~~ 258 (298)
.+..|+-.|+|++.=.+++||.|+.+|++.|+++|.. +...++. +|.. -+.+.+-..... .|++++-.|..+
T Consensus 182 rfppDI~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~s~IiL~s--LF~tP~gak~i~~~fP~itiltseihpvaP 256 (267)
T KOG1017|consen 182 RFPPDITSRRVLLMYPIISTGNTVCKAVEVLKEHGVPDSNIILVS--LFITPTGAKNITRKFPYITILTSEIHPVAP 256 (267)
T ss_pred ecCCcccceeEEEEeeeecCCccHHHHHHHHHHcCCCcccEEEEE--eeecchhhHHHHHhCCeEEEEeecceecCc
Confidence 4567899999999999999999999999999999975 3333332 4443 344444433333 455555555543
No 99
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=91.79 E-value=0.77 Score=39.64 Aligned_cols=100 Identities=10% Similarity=0.101 Sum_probs=61.7
Q ss_pred EEEeCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeeccCcccccccccCCCchHHHHHHHHHHHhC
Q 022367 19 YVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAG 98 (298)
Q Consensus 19 ~v~i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~~~~~~~~a~~va~ll~~~g 98 (298)
-+.+-++|.|++++|+-.+..... -+.-.++.||+.||++|.++.-+-=++-. -.+.|+...
T Consensus 74 ~~~vVGDV~gk~~IIvDDiIdtg~----Tl~~aA~~Lk~~GA~~V~~~aTHgvfs~~--------------A~~~l~~s~ 135 (184)
T PF14572_consen 74 PMNVVGDVKGKICIIVDDIIDTGG----TLIKAAELLKERGAKKVYACATHGVFSGD--------------APERLEESP 135 (184)
T ss_dssp -EEEES--TTSEEEEEEEEESSTH----HHHHHHHHHHHTTESEEEEEEEEE---TT--------------HHHHHHHSS
T ss_pred ceEEEEEccCCeEeeecccccchH----HHHHHHHHHHHcCCCEEEEEEeCcccCch--------------HHHHHhhcC
Confidence 355668999999999977644322 36778889999999999988776544321 234567778
Q ss_pred CCEEEEEcCCcccccCCCCcccccccchHHHHHHHHhh
Q 022367 99 ANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASK 136 (298)
Q Consensus 99 ~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~l~~~ 136 (298)
+++|++-|-.....+..-.-....++-.++|++.|+..
T Consensus 136 Id~vvvTnTIp~~~~~~~~~Ki~vldis~llaeaI~ri 173 (184)
T PF14572_consen 136 IDEVVVTNTIPQEEQKLQCPKIKVLDISPLLAEAIRRI 173 (184)
T ss_dssp ESEEEEETTS--HHHHHH-TTEEEE--HHHHHHHHHHH
T ss_pred CeEEEEeccccCchhhhcCCCEeEeehHHHHHHHHHHH
Confidence 99999988543211111012345567788899888764
No 100
>PF15610 PRTase_3: PRTase ComF-like
Probab=85.89 E-value=0.99 Score=41.18 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=33.8
Q ss_pred CCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEE
Q 022367 189 DVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYAC 226 (298)
Q Consensus 189 ~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (298)
.++||.||.+|||--||++=....+.+++.|++....+
T Consensus 135 ~l~gk~lIflDDIkITGshE~~V~~~~~~~~~~~~~~y 172 (274)
T PF15610_consen 135 FLSGKHLIFLDDIKITGSHEDKVRKILKEYGLENDFIY 172 (274)
T ss_pred HhCCcEEEEeccEEecCcHHHHHHHHHHHcCccccEEE
Confidence 47999999999999999999999999999999874444
No 101
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=84.01 E-value=6.9 Score=35.20 Aligned_cols=96 Identities=13% Similarity=0.210 Sum_probs=58.6
Q ss_pred HHHHHHHhcCCCeEEEEeeccCcccccccccCCCchHHHHHHHHHHHhCCCEEEEEcCCcccccCCCCcc----cccccc
Q 022367 50 VMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIP----VDHVYG 125 (298)
Q Consensus 50 ~~~~a~r~~~a~~i~~viPY~~YsRqdr~~~~~~~~~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~----~~~l~~ 125 (298)
-+++||+..|++||-++-||.+.- ...+.+.|++.|++-+-..- |++. +-.+.
T Consensus 110 A~~~AL~alg~~RIalvTPY~~~v-------------~~~~~~~l~~~G~eV~~~~~---------~~~~~~~~ia~i~- 166 (239)
T TIGR02990 110 AAVDGLAALGVRRISLLTPYTPET-------------SRPMAQYFAVRGFEIVNFTC---------LGLTDDREMARIS- 166 (239)
T ss_pred HHHHHHHHcCCCEEEEECCCcHHH-------------HHHHHHHHHhCCcEEeeeec---------cCCCCCceeeecC-
Confidence 467899999999999999998742 22577888888855333211 2211 11121
Q ss_pred hHHHHHHHHhhc-cCCCCeEEEeeCCChHHHHHHHHHHcCCCCEE
Q 022367 126 QPVILDYLASKA-ISSDDLVVVSPDVGGVARARAFAKKLSDAPLA 169 (298)
Q Consensus 126 ~~~la~~l~~~~-~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~ 169 (298)
-..+.+.+++.. .+.+-.++.+.....+.....+-+.+| .|+.
T Consensus 167 p~~i~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~lG-kPVl 210 (239)
T TIGR02990 167 PDCIVEAALAAFDPDADALFLSCTALRAATCAQRIEQAIG-KPVV 210 (239)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHHHC-CCEE
Confidence 223334443321 122335666777788888888888888 7763
No 102
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=79.74 E-value=33 Score=29.30 Aligned_cols=113 Identities=24% Similarity=0.345 Sum_probs=70.4
Q ss_pred HHHHHHhCCCEEEEEcCCcccccCCCCcccccccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEEE
Q 022367 91 ANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAI 170 (298)
Q Consensus 91 a~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~~ 170 (298)
.+.|...|+..+++ |+-.- . +|+++-++.|++-+++.+.-..+-..+|+ .++.-.|+...+..|+ +++.+
T Consensus 20 ~~~L~~~Gikgvi~-DlDNT-----L-v~wd~~~~tpe~~~W~~e~k~~gi~v~vv--SNn~e~RV~~~~~~l~-v~fi~ 89 (175)
T COG2179 20 PDILKAHGIKGVIL-DLDNT-----L-VPWDNPDATPELRAWLAELKEAGIKVVVV--SNNKESRVARAAEKLG-VPFIY 89 (175)
T ss_pred HHHHHHcCCcEEEE-eccCc-----e-ecccCCCCCHHHHHHHHHHHhcCCEEEEE--eCCCHHHHHhhhhhcC-Cceee
Confidence 45677788887775 32210 0 67788889999999987642122234444 4577789999999998 88765
Q ss_pred EEeeecC-------------CCeEE-E----E--eeecCCCCCEEEEEeCccCchHHHHHHHH
Q 022367 171 VDKRRQG-------------HNVAE-V----M--NLIGDVKGKVAVMVDDMIDTAGTISKGAA 213 (298)
Q Consensus 171 ~~k~r~~-------------~~~~~-~----~--~~~g~v~gk~ViIVDDii~TG~Tl~~a~~ 213 (298)
-.++..+ ....- + + .+.|...|-++|+|..+..+.+-.....+
T Consensus 90 ~A~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~Pl~~~d~~~t~~nR 152 (175)
T COG2179 90 RAKKPFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILVEPLVAPDGWITKINR 152 (175)
T ss_pred cccCccHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEEEEeccccchhhhhhH
Confidence 4433211 01110 0 1 12346678899999999999884444333
No 103
>PF06300 Tsp45I: Tsp45I type II restriction enzyme; InterPro: IPR010443 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction endonucleases such as Tsp45I, which recognises the DNA sequence 5' GTSAC, cleaving prior to G-1 [].
Probab=79.69 E-value=3.5 Score=36.72 Aligned_cols=160 Identities=14% Similarity=0.245 Sum_probs=87.6
Q ss_pred chhHHHHHHHHHHHHhcCCCeEEEEeeccCcccccccccCCCchHHHHHHHHHHHhCCCEEEEEcCCcccccCCCCcc-c
Q 022367 42 NENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIP-V 120 (298)
Q Consensus 42 ~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~~~~~~~~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~-~ 120 (298)
+.+|++.||-.+ ..-.==||+||-|.|+....+.|-|.+.+|..|.++|.+.|+. .. ..| .
T Consensus 53 ~~~li~~lL~~~--------lfPikdsYvayLkrdksAlernP~Ti~ri~g~l~emGl~~i~e---------k~-t~PkE 114 (261)
T PF06300_consen 53 STKLIKSLLNLD--------LFPIKDSYVAYLKRDKSALERNPETINRICGRLYEMGLDKIYE---------KC-TEPKE 114 (261)
T ss_pred hHHHHHHHHhcc--------cCccCcchHHHHHhhHHHHhcCcHHHHHHHHHHHHHhHHHHHH---------Hc-CCCch
Confidence 455666666422 2222348999999999888999999999999999999888763 11 112 2
Q ss_pred ccccchHHHHHHHHhhccC------------CCCeEEEeeCCChHHHHHHHHH-HcC---CCCEEEEEeeecCCCeEEEE
Q 022367 121 DHVYGQPVILDYLASKAIS------------SDDLVVVSPDVGGVARARAFAK-KLS---DAPLAIVDKRRQGHNVAEVM 184 (298)
Q Consensus 121 ~~l~~~~~la~~l~~~~~~------------~~~~viv~p~~Gg~~~a~~la~-~L~---~~~~~~~~k~r~~~~~~~~~ 184 (298)
.|-.-.|++-+|+.....+ .++.++ .|+=.-...+|+ .|| +..+.|+.+.+...-..+.
T Consensus 115 tNRQIGPlFk~W~~~~~lG~~p~~~~~fl~~~~~~Il----~asD~~mk~fAk~~Lgy~~~KGlDFia~fn~k~iigEa- 189 (261)
T PF06300_consen 115 TNRQIGPLFKNWINSGALGVEPVDQNDFLNNKENAIL----NASDKAMKDFAKEYLGYNRNKGLDFIAKFNGKYIIGEA- 189 (261)
T ss_pred hcchhhHHHHHHHhccccCCCCCChhHHHhcccCeeE----eccHHHHHHHHHHhcCCccccCceeEEEecCeEEEEEE-
Confidence 2333456666776543211 122333 233233334443 343 2234455444321111111
Q ss_pred eeecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCc
Q 022367 185 NLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSP 234 (298)
Q Consensus 185 ~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~ 234 (298)
....|.-|- --.-+.-|+..++..+.+.|.++..-|++--
T Consensus 190 KFltDfGGH----------QnaQ~~dAi~ti~~~~~~~ikIaIlDGvlyi 229 (261)
T PF06300_consen 190 KFLTDFGGH----------QNAQFNDAISTIRSPNKNVIKIAILDGVLYI 229 (261)
T ss_pred EeecccCCc----------chHHHHHHHHHhcCCCcCeEEEEEecceeEE
Confidence 122233332 1244666777777777777777776666543
No 104
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=67.55 E-value=14 Score=29.77 Aligned_cols=36 Identities=33% Similarity=0.508 Sum_probs=32.3
Q ss_pred cCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEE
Q 022367 188 GDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 227 (298)
Q Consensus 188 g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (298)
++++|++++|+ -+|++-..++..|.+.|+++|+++.
T Consensus 8 ~~l~~~~vlvi----GaGg~ar~v~~~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 8 GDLKGKRVLVI----GAGGAARAVAAALAALGAKEITIVN 43 (135)
T ss_dssp STGTTSEEEEE----SSSHHHHHHHHHHHHTTSSEEEEEE
T ss_pred CCcCCCEEEEE----CCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 57899999986 4799999999999999999998876
No 105
>PLN02501 digalactosyldiacylglycerol synthase
Probab=65.34 E-value=63 Score=34.01 Aligned_cols=130 Identities=13% Similarity=0.220 Sum_probs=65.4
Q ss_pred CCeEEEEecCCCC--CchhHHHHHHHHHHHHhcCCCeEEEEeeccCcccccccccCCCch-----HHHHHHHHH-HHhCC
Q 022367 28 GCHVFLVQPSCPP--ANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESI-----AAKLVANLI-TEAGA 99 (298)
Q Consensus 28 g~~v~iiqs~~~~--~~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~~~~~~~-----~a~~va~ll-~~~g~ 99 (298)
+++|.|+.+.+-| .-..+.-|+-.+.-++. |-.+||+|+|+++-+-|......+-.+ --.++.++| +.+|+
T Consensus 322 ~r~~~ivTtAslPWmTGtavnpL~rAayLa~~-~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r~g~ 400 (794)
T PLN02501 322 KRHVAIVTTASLPWMTGTAVNPLFRAAYLAKS-AKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEERIGF 400 (794)
T ss_pred CCeEEEEEcccCcccccccccHHHHHHHhccc-CCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHhcCC
Confidence 5889999776544 12233345555554553 568999999999976554332212122 223567788 56776
Q ss_pred CEEEEEcCCcccccCCCCcccccccchHHHHHHHHhhccCCCCeEEEeeCCChHH-HHHHHHHHcC
Q 022367 100 NRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSDDLVVVSPDVGGVA-RARAFAKKLS 164 (298)
Q Consensus 100 d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~-~a~~la~~L~ 164 (298)
..-..+...- +-|.....-|.+..-+.+.|.+. +.+-..+..|..=|.. -|...|+.++
T Consensus 401 ~~~~~i~fYp----g~~~~~~~SI~p~gdI~~~L~~f--~PDVVHLatP~~LGw~~~Glr~ArKl~ 460 (794)
T PLN02501 401 KADFKISFYP----GKFSKERRSIIPAGDTSQFIPSK--DADIAILEEPEHLNWYHHGKRWTDKFN 460 (794)
T ss_pred CCCceEEeec----chhccCCccccchHHHHHHhhcc--CCCEEEECCchhhccHHHHHHHHHHcC
Confidence 5322222111 12222223344555566666542 1111223334432222 2455555554
No 106
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=65.15 E-value=40 Score=31.38 Aligned_cols=99 Identities=16% Similarity=0.112 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCCCCEEEEEeeecCCCeEEEEeeecCCCCCEEEEEeCccCc----hHHHHHHHHHHHHcCCCEEEEEEEe
Q 022367 154 ARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDT----AGTISKGAALLHQEGAREVYACSTH 229 (298)
Q Consensus 154 ~~a~~la~~L~~~~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDDii~T----G~Tl~~a~~~Lk~~Ga~~V~~~~tH 229 (298)
.+|+.++.+|+ +++.-+.-++...++. ......++.|++|.|+---+.+ =-++.-.+.+++.+-+++|.++.
T Consensus 14 ~La~~I~~~lg-i~l~~v~~kkf~nge~-~v~i~esvR~~dV~iiqsgsg~ind~lmELLI~I~ac~~asa~~vTaVi-- 89 (316)
T KOG1448|consen 14 ELAERIAARLG-IELGKVNLKKFSNGET-SVQIGESVRGEDVYIIQSGSGPINDNLMELLIMINACKRASASRVTAVI-- 89 (316)
T ss_pred HHHHHHHHHhC-CCcceeeeEEccCCcE-EEecccccccCcEEEeccCCCcchHHHHHHHHHHHhcchhhhheeEEec--
Confidence 46888888887 7776555444434432 2355668999999999543322 12344556778888888888876
Q ss_pred ccCCccHHH----------------HhhcCCCCEEEEecCCCC
Q 022367 230 AVFSPPAIE----------------RLSSGLFQEVIITNTIPV 256 (298)
Q Consensus 230 ~l~~~~a~~----------------~l~~~~i~~ii~tnti~~ 256 (298)
|-|...-.+ .+..+|.+.+++.|-...
T Consensus 90 P~Fpyarq~~k~~~r~~i~aklVanlls~aG~dhvItmDlHa~ 132 (316)
T KOG1448|consen 90 PYFPYARQDKKDKSRAPILAKLVANLLSSAGADHVITMDLHAS 132 (316)
T ss_pred cCCccccchhhhhhhhhHHHHHHHhhhhccCCceEEEecccch
Confidence 555432111 133478899999997754
No 107
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=59.84 E-value=25 Score=30.69 Aligned_cols=47 Identities=19% Similarity=0.376 Sum_probs=36.5
Q ss_pred eEEEeCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEee
Q 022367 18 IYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIP 68 (298)
Q Consensus 18 ~~v~i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viP 68 (298)
.+.++++++.|++|+++-.+...-+. +...++.+++.|+++|.++..
T Consensus 112 ~~~~lp~~i~~~~VllvDd~laTG~T----l~~ai~~L~~~G~~~I~v~~l 158 (207)
T TIGR01091 112 YYSKLPEDIDERTVIVLDPMLATGGT----MIAALDLLKKRGAKKIKVLSI 158 (207)
T ss_pred EEecCCCCCCCCEEEEECCCccchHH----HHHHHHHHHHcCCCEEEEEEE
Confidence 36677889999999999776543332 667788899999999988876
No 108
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=58.51 E-value=41 Score=28.88 Aligned_cols=60 Identities=18% Similarity=0.366 Sum_probs=38.9
Q ss_pred cccceeeeee-----CCCceEEE--eCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEe
Q 022367 4 DLGKIKIKRF-----ADGEIYVQ--LQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVI 67 (298)
Q Consensus 4 ~~~~~~~~~F-----~dGE~~v~--i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~vi 67 (298)
++..+.+..| +.|+.++. +.++++|+||.+|-..-..-. -|-.+.+-|+..||+++.++.
T Consensus 62 e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdVLiVeDIiDsG~----TLs~i~~~l~~r~a~sv~i~t 128 (178)
T COG0634 62 EVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDVLIVEDIIDSGL----TLSKVRDLLKERGAKSVRIAT 128 (178)
T ss_pred eeEEEEEeccCCCcccCCceEEecccccCCCCCeEEEEecccccCh----hHHHHHHHHHhCCCCeEEEEE
Confidence 3444555666 44566664 358899999999965432211 244556667788999998764
No 109
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=58.12 E-value=94 Score=27.63 Aligned_cols=99 Identities=10% Similarity=0.199 Sum_probs=56.1
Q ss_pred HHHHHHHhcCCCeEEEEeeccCcccccccccCCCchHHHHHHHHHHHhCCCEEEEEcCCcccccCCCCccccccc--chH
Q 022367 50 VMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVY--GQP 127 (298)
Q Consensus 50 ~~~~a~r~~~a~~i~~viPY~~YsRqdr~~~~~~~~~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~--~~~ 127 (298)
-.+++|+..|++||.+..||.----| ..+++|+.-|++-+ |.-+-.+.. |...-.+. ...
T Consensus 108 Avv~aL~al~a~ri~vlTPY~~evn~-------------~e~ef~~~~Gfeiv---~~~~Lgi~d--n~eigr~~P~~~y 169 (238)
T COG3473 108 AVVEALNALGAQRISVLTPYIDEVNQ-------------REIEFLEANGFEIV---DFKGLGITD--NLEIGRQEPWAVY 169 (238)
T ss_pred HHHHHHHhhCcceEEEeccchhhhhh-------------HHHHHHHhCCeEEE---EeeccCCcc--cchhcccChHHHH
Confidence 46789999999999999999764333 46788888775322 211111110 11111111 122
Q ss_pred HHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCEE
Q 022367 128 VILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLA 169 (298)
Q Consensus 128 ~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~~ 169 (298)
.||+.+.. .+.+-..+-+....++.....+-+.+| .|+.
T Consensus 170 ~lAk~~~~--~~~DaiFiSCTnlRt~eii~~lE~~~G-~PVv 208 (238)
T COG3473 170 RLAKEVFT--PDADAIFISCTNLRTFEIIEKLERDTG-VPVV 208 (238)
T ss_pred HHHHHhcC--CCCCeEEEEeeccccHHHHHHHHHHhC-Ccee
Confidence 34444332 133334555667777777777777787 7754
No 110
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=58.00 E-value=1.1e+02 Score=25.26 Aligned_cols=107 Identities=24% Similarity=0.285 Sum_probs=66.8
Q ss_pred CCCchhHHHHHHHHHHHHhcCCCeEEEEeeccCcccccccccCCCchHHHHHHHHHHHhCCCEEEEEcCCcccccCCCCc
Q 022367 39 PPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDI 118 (298)
Q Consensus 39 ~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~~~~~~~~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i 118 (298)
...++.-.|++-....+++..-..+++++- + ..+=.+..+.+.+...|+|+++.++ .+.... |+
T Consensus 11 ~~l~~~~~e~l~~A~~La~~~g~~v~av~~--G----------~~~~~~~~l~~~l~~~G~d~v~~~~--~~~~~~-~~- 74 (164)
T PF01012_consen 11 GRLNPVSLEALEAARRLAEALGGEVTAVVL--G----------PAEEAAEALRKALAKYGADKVYHID--DPALAE-YD- 74 (164)
T ss_dssp CEE-HHHHHHHHHHHHHHHCTTSEEEEEEE--E----------TCCCHHHHHHHHHHSTTESEEEEEE---GGGTT-C--
T ss_pred CccCHHHHHHHHHHHHHHhhcCCeEEEEEE--e----------cchhhHHHHhhhhhhcCCcEEEEec--Cccccc-cC-
Confidence 345666778888888888865557877762 2 1112344567778779999999986 111111 11
Q ss_pred ccccccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCE
Q 022367 119 PVDHVYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPL 168 (298)
Q Consensus 119 ~~~~l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~ 168 (298)
+ ..-...+++.+.+. ..+.++++....|-..+..+|.+|+ .++
T Consensus 75 ~---~~~a~~l~~~~~~~---~~~lVl~~~t~~g~~la~~lA~~L~-~~~ 117 (164)
T PF01012_consen 75 P---EAYADALAELIKEE---GPDLVLFGSTSFGRDLAPRLAARLG-APL 117 (164)
T ss_dssp H---HHHHHHHHHHHHHH---T-SEEEEESSHHHHHHHHHHHHHHT--EE
T ss_pred H---HHHHHHHHHHHHhc---CCCEEEEcCcCCCCcHHHHHHHHhC-CCc
Confidence 1 11234555555553 3456778877888889999999998 676
No 111
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=57.63 E-value=41 Score=28.66 Aligned_cols=59 Identities=17% Similarity=0.303 Sum_probs=37.4
Q ss_pred ceeeeeeCCCc----eEEE--eCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeec
Q 022367 7 KIKIKRFADGE----IYVQ--LQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPY 69 (298)
Q Consensus 7 ~~~~~~F~dGE----~~v~--i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY 69 (298)
.+...++.+++ .... ...+++|++|+||-.....- . - |...++.|++.||++|.+..-+
T Consensus 70 ~l~~~~~~~~~~~~~~~~~~~~~~~v~gk~VLIVDDIidTG-~-T--l~~~~~~Lk~~Ga~~V~~avL~ 134 (181)
T PRK09162 70 YLHATRYRNETTGGELVWKVKPRESLKGRTVLVVDDILDEG-H-T--LAAIRDRCLEMGAAEVYSAVLV 134 (181)
T ss_pred EEEEEecCCCccCCceeEecCCCCCCCCCEEEEEccccCcH-H-H--HHHHHHHHHhCCCCEEEEEEEE
Confidence 44555555543 2222 23578999999996654321 1 2 4466777899999999887644
No 112
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=57.58 E-value=80 Score=26.96 Aligned_cols=61 Identities=10% Similarity=0.200 Sum_probs=40.3
Q ss_pred ccceeeeeeC-----CCceEEEe--CCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeec
Q 022367 5 LGKIKIKRFA-----DGEIYVQL--QESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPY 69 (298)
Q Consensus 5 ~~~~~~~~F~-----dGE~~v~i--~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY 69 (298)
+..+....|- +|+..+.. ..+++|++|+||-.....- ..+ ..+.+.++..+++++..+.-+
T Consensus 62 v~~l~~ssY~~~~~~~~~v~i~~~~~~~v~gk~VLlVDDIiDTG-~TL---~~l~~~l~~~~~~~v~~avL~ 129 (178)
T PRK15423 62 VDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDIIDSG-NTL---SKVREILSLREPKSLAICTLL 129 (178)
T ss_pred eeEEEEEEecCCCcccCceEEecCCCCCCCCCEEEEEeeecCch-HHH---HHHHHHHHhCCCCEEEEEEEE
Confidence 4567778886 45555543 3578999999997664432 222 266677888899988665543
No 113
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=55.51 E-value=42 Score=33.47 Aligned_cols=77 Identities=17% Similarity=0.278 Sum_probs=45.8
Q ss_pred CCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEee--------ccCcccccccccCCCchHHHHHHHHH
Q 022367 23 QESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIP--------YFGYARADRKTQGRESIAAKLVANLI 94 (298)
Q Consensus 23 ~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viP--------Y~~YsRqdr~~~~~~~~~a~~va~ll 94 (298)
...++|+.|++|-..-.. -.. +--+++++|++||+.|.+.+- |++..++.|...-..-.+.+.+++.
T Consensus 345 ~~~~~gk~vllVDDvitt-G~T---~~~~~~~L~~~Ga~~v~~~~~~p~~~~~c~ygid~~~~~~lia~~~~~~ei~~~- 419 (484)
T PRK07272 345 SGVVKGKRVVMVDDSIVR-GTT---SRRIVQLLKEAGAKEVHVAIASPELKYPCFYGIDIQTRRELISANHSVEEICDI- 419 (484)
T ss_pred ccccCCCEEEEEccccCc-hHH---HHHHHHHHHhcCCcEEEEEEeCCccccChhhhccCcCHHHHHhcCCCHHHHHHH-
Confidence 356889999998543221 122 335778899999999999877 6666666554211111233344443
Q ss_pred HHhCCCEEEEEc
Q 022367 95 TEAGANRVLACD 106 (298)
Q Consensus 95 ~~~g~d~ii~vd 106 (298)
.|+|.+.-+.
T Consensus 420 --~~~dsl~~~~ 429 (484)
T PRK07272 420 --IGADSLTYLS 429 (484)
T ss_pred --hCCCEEEEec
Confidence 4666665544
No 114
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=53.71 E-value=37 Score=29.64 Aligned_cols=46 Identities=28% Similarity=0.443 Sum_probs=35.1
Q ss_pred EEEeCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEee
Q 022367 19 YVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIP 68 (298)
Q Consensus 19 ~v~i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viP 68 (298)
+.+++.++.|++|+++-.+...-+ -+...++.+++.|+++|.++.-
T Consensus 115 ~~~lp~~i~~~~VllvDd~laTG~----Tl~~ai~~L~~~G~~~I~~~~l 160 (209)
T PRK00129 115 YVKLPEDIDERTVIVVDPMLATGG----SAIAAIDLLKKRGAKNIKVLCL 160 (209)
T ss_pred EeeCCCcCCCCEEEEECCcccchH----HHHHHHHHHHHcCCCEEEEEEE
Confidence 566788999999999876654332 2566778888999999988775
No 115
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=53.03 E-value=83 Score=23.10 Aligned_cols=63 Identities=21% Similarity=0.157 Sum_probs=37.7
Q ss_pred EEEEEeCccCchHHHHHHHHHHHHc-CCCEEEEEEEe-cc-CCcc-----HHHHhhcCCCCEEEEecCCCC
Q 022367 194 VAVMVDDMIDTAGTISKGAALLHQE-GAREVYACSTH-AV-FSPP-----AIERLSSGLFQEVIITNTIPV 256 (298)
Q Consensus 194 ~ViIVDDii~TG~Tl~~a~~~Lk~~-Ga~~V~~~~tH-~l-~~~~-----a~~~l~~~~i~~ii~tnti~~ 256 (298)
.+.+++|...+=.++.++.+.+++. +.+++.++.-- +- .+++ ....+.....+.+++|..-|.
T Consensus 13 ~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~vi~~~~~~r 83 (91)
T PF02875_consen 13 GPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADVVILTGDNPR 83 (91)
T ss_dssp TEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSEEEEETSBTT
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEEccccccccccHHHHHHHHHHHHhcCCEEEEcCCCCC
Confidence 4677777999999999999999987 55666555521 11 1121 222333344677888776554
No 116
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=51.57 E-value=1.9e+02 Score=26.29 Aligned_cols=125 Identities=11% Similarity=0.068 Sum_probs=67.4
Q ss_pred HHHHHHHHHHcCCCCEEEEEeeecCCCeEEEEeeecCCCCCEEEEEeCccCc----hHHHHHHHHHHHHcCCCEEEEEEE
Q 022367 153 VARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDT----AGTISKGAALLHQEGAREVYACST 228 (298)
Q Consensus 153 ~~~a~~la~~L~~~~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIVDDii~T----G~Tl~~a~~~Lk~~Ga~~V~~~~t 228 (298)
-.+|+.++++|+ +.+.-.....+...+ ....+...+.||+|+|+.-.--. =--+.-.+=++|..-++++..+.-
T Consensus 18 ~elak~vaerlg-i~~g~~~vy~~tnre-t~vei~~svrgkdvfiiqt~skdvn~~vmellim~yackts~aksiigvip 95 (354)
T KOG1503|consen 18 PELAKMVAERLG-IELGKATVYQKTNRE-TRVEIKESVRGKDVFIIQTGSKDVNNDVMELLIMAYACKTSCAKSIIGVIP 95 (354)
T ss_pred HHHHHHHHHHhc-ccccceEEEecCCCc-eEEEhhhhccCceEEEEEecCcccchHHHHHHHHHHHHhhhhhhceEEEee
Confidence 377888888887 555322222211111 12245568999999998744322 222233344577777888887774
Q ss_pred eccCCccHH-------------HHhhcCCCCEEEEecCCCCc-ccCCCCCeeEEechHHHHHHHH
Q 022367 229 HAVFSPPAI-------------ERLSSGLFQEVIITNTIPVS-ERNYFPQLTILSVANLLGETIW 279 (298)
Q Consensus 229 H~l~~~~a~-------------~~l~~~~i~~ii~tnti~~~-~~~~~~ki~~isva~lla~~i~ 279 (298)
.--.|+.+. +.+.++|...+++.|-...+ +....-.+.-+-.+|.|-..|.
T Consensus 96 y~pyskqckmrkrgsiv~klla~mmckaglthlitmdlhqkeiqgff~~pvdnlraspfllqyiq 160 (354)
T KOG1503|consen 96 YLPYSKQCKMRKRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFSIPVDNLRASPFLLQYIQ 160 (354)
T ss_pred cCccchhhhhhhcccHHHHHHHHHHHhcccceEEeehhhhHhhcceecccccccccCHHHHHHHH
Confidence 433444432 22346888999988865322 1111111333455666655554
No 117
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=51.44 E-value=33 Score=27.77 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEecCC
Q 022367 204 TAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTI 254 (298)
Q Consensus 204 TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tnti 254 (298)
+-..+.+.++.|+++|...+.+++ -|.....-.+.+.+.+++.+|.+.|-
T Consensus 66 ~~~~~~~~~~~L~~~g~~~i~viv-GG~~~~~~~~~l~~~Gvd~~~~~gt~ 115 (132)
T TIGR00640 66 HLTLVPALRKELDKLGRPDILVVV-GGVIPPQDFDELKEMGVAEIFGPGTP 115 (132)
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEE-eCCCChHhHHHHHHCCCCEEECCCCC
Confidence 556678889999999986655555 34444545677888899999988873
No 118
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=51.07 E-value=57 Score=32.47 Aligned_cols=73 Identities=21% Similarity=0.200 Sum_probs=42.7
Q ss_pred CccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEe-----eccCccc---ccccccCCCchHHHHHHHHHHH
Q 022367 25 SVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVI-----PYFGYAR---ADRKTQGRESIAAKLVANLITE 96 (298)
Q Consensus 25 ~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~vi-----PY~~YsR---qdr~~~~~~~~~a~~va~ll~~ 96 (298)
.++|++|++|-.....- . -|.-+++.||++||++|.+.+ -|-.|.- .++...-..-.+...++++|
T Consensus 357 ~~~gk~vvlvDD~i~tG-~---Tl~~~~~~l~~~Ga~~v~~~~~~p~~~~~~~~gid~~~~~~l~~~~~~~~ei~~~i-- 430 (479)
T PRK09123 357 VIEGKRVVLVDDSIVRG-T---TSRKIVQMLRDAGAKEVHLRIASPPITHPCFYGIDTPERSKLLAATHSLEEMAEYI-- 430 (479)
T ss_pred ccCCCEEEEEeceeCch-H---HHHHHHHHHHHcCCCEEEEEEcCCCCccceeecCCCCCHHHHHHcCCCHHHHHHHh--
Confidence 47899999985432221 2 245688899999999999988 3444444 22221111113444555544
Q ss_pred hCCCEEEE
Q 022367 97 AGANRVLA 104 (298)
Q Consensus 97 ~g~d~ii~ 104 (298)
|+|.+.-
T Consensus 431 -gadsl~y 437 (479)
T PRK09123 431 -GADSLAF 437 (479)
T ss_pred -CCCeEec
Confidence 6666653
No 119
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=50.94 E-value=31 Score=24.80 Aligned_cols=33 Identities=30% Similarity=0.336 Sum_probs=27.2
Q ss_pred CCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEE
Q 022367 191 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYAC 226 (298)
Q Consensus 191 ~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (298)
+++.+++++ .+|.....++..|++.|-..|+.+
T Consensus 55 ~~~~iv~~c---~~g~~a~~~~~~l~~~G~~~v~~l 87 (100)
T smart00450 55 KDKPVVVYC---RSGNRSAKAAWLLRELGFKNVYLL 87 (100)
T ss_pred CCCeEEEEe---CCCcHHHHHHHHHHHcCCCceEEe
Confidence 567899988 578888899999999998886654
No 120
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=50.59 E-value=36 Score=28.21 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEecC
Q 022367 207 TISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNT 253 (298)
Q Consensus 207 Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tnt 253 (298)
.+..+.+.|+++|+..+.+++ =|+...+-.+.+++.+++++|.-.|
T Consensus 79 l~~~lve~lre~G~~~i~v~~-GGvip~~d~~~l~~~G~~~if~pgt 124 (143)
T COG2185 79 LVPGLVEALREAGVEDILVVV-GGVIPPGDYQELKEMGVDRIFGPGT 124 (143)
T ss_pred HHHHHHHHHHHhCCcceEEee-cCccCchhHHHHHHhCcceeeCCCC
Confidence 356788999999999999554 3677777788899999999996543
No 121
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=50.02 E-value=73 Score=26.72 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=30.8
Q ss_pred eCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeec
Q 022367 22 LQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPY 69 (298)
Q Consensus 22 i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY 69 (298)
+..++.|++|+||-.+...- .. +...+++|+..|+++|.++.-+
T Consensus 78 ~~~~~~gk~vlivDDii~TG-~T---l~~~~~~l~~~g~~~i~~~~l~ 121 (166)
T TIGR01203 78 LDLSIKGKDVLIVEDIVDTG-LT---LQYLLDLLKARKPKSLKIVTLL 121 (166)
T ss_pred CCCCCCCCEEEEEeeeeCcH-HH---HHHHHHHHHHCCCCEEEEEEEE
Confidence 45678899999996654432 22 4556677888899998876644
No 122
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=49.57 E-value=35 Score=24.20 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=27.6
Q ss_pred CCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEE
Q 022367 190 VKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYAC 226 (298)
Q Consensus 190 v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (298)
-+++.|+++++- |.....++..|++.|-..++.+
T Consensus 48 ~~~~~vv~~c~~---~~~a~~~~~~l~~~G~~~v~~l 81 (89)
T cd00158 48 DKDKPIVVYCRS---GNRSARAAKLLRKAGGTNVYNL 81 (89)
T ss_pred CCCCeEEEEeCC---CchHHHHHHHHHHhCcccEEEe
Confidence 367889998875 7788889999999998877754
No 123
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=49.44 E-value=33 Score=25.37 Aligned_cols=33 Identities=18% Similarity=0.039 Sum_probs=26.2
Q ss_pred CCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEE
Q 022367 191 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYAC 226 (298)
Q Consensus 191 ~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (298)
++++++++++ +|.+...++..|++.|-..|+.+
T Consensus 55 ~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~~l 87 (96)
T cd01529 55 RATRYVLTCD---GSLLARFAAQELLALGGKPVALL 87 (96)
T ss_pred CCCCEEEEeC---ChHHHHHHHHHHHHcCCCCEEEe
Confidence 4678899865 78888888889999998877554
No 124
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=47.05 E-value=32 Score=25.19 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=26.9
Q ss_pred CCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEE
Q 022367 191 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYA 225 (298)
Q Consensus 191 ~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~ 225 (298)
+++.++++.. +|.+...++..|++.|-..|+.
T Consensus 55 ~~~~ivv~c~---~g~~s~~a~~~l~~~G~~~v~~ 86 (96)
T cd01444 55 RDRPVVVYCY---HGNSSAQLAQALREAGFTDVRS 86 (96)
T ss_pred CCCCEEEEeC---CCChHHHHHHHHHHcCCceEEE
Confidence 5678888877 8889999999999999887764
No 125
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=45.80 E-value=86 Score=27.65 Aligned_cols=60 Identities=13% Similarity=0.293 Sum_probs=39.5
Q ss_pred cccceeeeeeCCC-----ceEEE--eCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEe
Q 022367 4 DLGKIKIKRFADG-----EIYVQ--LQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVI 67 (298)
Q Consensus 4 ~~~~~~~~~F~dG-----E~~v~--i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~vi 67 (298)
.+..+.+..|-|| ++.+. +..+++|++|+||-..... =-=|..+++.|+..++++|..+.
T Consensus 87 ~vdfi~vssY~~~~~s~g~~~i~~~~~~~i~gk~VLIVDDIvDT----G~TL~~v~~~l~~~~p~svk~av 153 (211)
T PTZ00271 87 KVEFICASSYGTGVETSGQVRMLLDVRDSVENRHILIVEDIVDS----AITLQYLMRFMLAKKPASLKTVV 153 (211)
T ss_pred eEEEEEEEecCCCCcccCceEEecCCCCCCCCCEEEEEecccCC----HHHHHHHHHHHHhcCCCEEEEEE
Confidence 4556777778654 34442 3468999999999665332 12356667778888898986554
No 126
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=44.29 E-value=1e+02 Score=26.53 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=40.1
Q ss_pred cceeeeeeCC-----CceEEEe---CCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeec
Q 022367 6 GKIKIKRFAD-----GEIYVQL---QESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPY 69 (298)
Q Consensus 6 ~~~~~~~F~d-----GE~~v~i---~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY 69 (298)
..+..++|.+ |+..+.. ..+++|++|+||-..... =--|..+++.++..|++++.++.-+
T Consensus 67 ~fi~~~sy~~~~~~~g~~~i~~~~~~~~v~gk~VliVDDIidT----G~Tl~~~~~~l~~~g~~~v~~avL~ 134 (189)
T PLN02238 67 DFIRASSYGGGTESSGVAKVSGADLKIDVKGKHVLLVEDIVDT----GNTLSALVAHLEAKGAASVSVCALL 134 (189)
T ss_pred EEEEeeecCCCccccCceeEecCCCCCCCCCCEEEEEecccch----HHHHHHHHHHHHhCCCCEEEEEEEE
Confidence 3456667754 4555544 357899999999665332 2235566788999999999877543
No 127
>PLN02440 amidophosphoribosyltransferase
Probab=44.17 E-value=93 Score=30.96 Aligned_cols=76 Identities=16% Similarity=0.223 Sum_probs=44.0
Q ss_pred CCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeec--------cCcccccccccCCCchHHHHHHHHHH
Q 022367 24 ESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPY--------FGYARADRKTQGRESIAAKLVANLIT 95 (298)
Q Consensus 24 ~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY--------~~YsRqdr~~~~~~~~~a~~va~ll~ 95 (298)
..++|++|+||-.....- . -|--+++.||++||++|.+.+-- ++..=.||.+.-+.-.+...+++.
T Consensus 336 ~~v~gk~VlLVDDiittG-t---Tl~~i~~~L~~aGa~~V~v~v~~p~~~~p~~~G~d~p~~~~li~~~~~~~ei~~~-- 409 (479)
T PLN02440 336 SVLEGKRVVVVDDSIVRG-T---TSSKIVRMLREAGAKEVHMRIASPPIIASCYYGVDTPSREELISNRMSVEEIRKF-- 409 (479)
T ss_pred ccccCceEEEEeceeCcH-H---HHHHHHHHHHhcCCCEEEEEEECCcccccceeeccCCCHHHHhhcCCCHHHHHHH--
Confidence 458999999985432211 1 24456788999999999876543 222333444332333444445544
Q ss_pred HhCCCEEEEEc
Q 022367 96 EAGANRVLACD 106 (298)
Q Consensus 96 ~~g~d~ii~vd 106 (298)
.|+|.+.-+.
T Consensus 410 -~~~dsl~~l~ 419 (479)
T PLN02440 410 -IGCDSLAFLP 419 (479)
T ss_pred -hCCCEEEEec
Confidence 4677776543
No 128
>PRK13671 hypothetical protein; Provisional
Probab=43.20 E-value=1.3e+02 Score=27.95 Aligned_cols=67 Identities=9% Similarity=0.095 Sum_probs=47.5
Q ss_pred EEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeeccCcccccccccCCCchHHHHHHHHHHHhCCCEEEEEcC
Q 022367 33 LVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDL 107 (298)
Q Consensus 33 iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~~~~~~~~a~~va~ll~~~g~d~ii~vdl 107 (298)
||.+..|.-|- .+.++-.+.+..+.+.|.+++..-|.-|.. ...++...-++|....|+|-|+-++.
T Consensus 5 IIaeFNP~H~G---Hl~~~~~a~~~~~~d~vi~vpSg~~~qrg~-----pa~~~~~~R~~ma~~~G~DLViELP~ 71 (298)
T PRK13671 5 IIAEYNPFHNG---HIYQINYIKNKFPNEKIIVILSGKYTQRGE-----IAVASFEKRKKIALKYGVDKVIKLPF 71 (298)
T ss_pred EEeeeCCccHH---HHHHHHHHHHhcCCCEEEEEECcCCCCCCC-----CCCCCHHHHHHHHHHcCCCEEEeccH
Confidence 56666555443 356666677778889999988887755542 12236778899999999999998774
No 129
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=42.30 E-value=33 Score=25.80 Aligned_cols=49 Identities=22% Similarity=0.257 Sum_probs=28.0
Q ss_pred ccCchHHHHHHHHHHHHcCCCEEEEEEEeccC-Ccc----HHHHhhcCCCCEEEEecC
Q 022367 201 MIDTAGTISKGAALLHQEGAREVYACSTHAVF-SPP----AIERLSSGLFQEVIITNT 253 (298)
Q Consensus 201 ii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~-~~~----a~~~l~~~~i~~ii~tnt 253 (298)
+++|++|- +.|+++|.....+.-...-- ..+ ..+.|.+..++-||.|-+
T Consensus 16 i~AT~gTa----~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~ 69 (95)
T PF02142_consen 16 IYATEGTA----KFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPY 69 (95)
T ss_dssp EEEEHHHH----HHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--
T ss_pred EEEChHHH----HHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCC
Confidence 56788885 56788997743333211111 123 778888888997776544
No 130
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=42.16 E-value=43 Score=24.92 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=22.8
Q ss_pred CCCEEEEEeCccCchHHHHHHHHHHHHcCCC
Q 022367 191 KGKVAVMVDDMIDTAGTISKGAALLHQEGAR 221 (298)
Q Consensus 191 ~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~ 221 (298)
+++.++++ |.+|..-..+++.|++.|-.
T Consensus 60 ~~~~ivv~---C~~G~rs~~aa~~L~~~G~~ 87 (100)
T cd01523 60 DDQEVTVI---CAKEGSSQFVAELLAERGYD 87 (100)
T ss_pred CCCeEEEE---cCCCCcHHHHHHHHHHcCce
Confidence 45667775 77898889999999999986
No 131
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=41.81 E-value=68 Score=26.72 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHHhCCCEEEEEcCCcccccCCCCcccccccchHHHHHH-HHhhccCCCCeEEEeeC-------CChHHH
Q 022367 84 SIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDY-LASKAISSDDLVVVSPD-------VGGVAR 155 (298)
Q Consensus 84 ~~~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~-l~~~~~~~~~~viv~p~-------~Gg~~~ 155 (298)
-.+...-.++|+++|+|.++.+| |+-...++.+. .+.+. |.+.. + -.-++||.| .|....
T Consensus 61 l~s~~ek~~~l~~~Gvd~~~~~~---------F~~~~~~ls~~-~Fi~~iL~~~l-~-~~~ivvG~DfrFG~~~~G~~~~ 128 (157)
T PF06574_consen 61 LTSLEEKLELLESLGVDYVIVIP---------FTEEFANLSPE-DFIEKILKEKL-N-VKHIVVGEDFRFGKNRSGDVEL 128 (157)
T ss_dssp SS-HHHHHHHHHHTTESEEEEE----------CCCHHCCS-HH-HHHHHHCCCHC-T-EEEEEEETT-EESGGGEEEHHH
T ss_pred CCCHHHHHHHHHHcCCCEEEEec---------chHHHHcCCHH-HHHHHHHHhcC-C-ccEEEEccCccCCCCCCCCHHH
Confidence 45677888999999999999976 32222234333 33443 33222 1 224778877 566666
Q ss_pred HHHHHHHcCCCCEEEE
Q 022367 156 ARAFAKKLSDAPLAIV 171 (298)
Q Consensus 156 a~~la~~L~~~~~~~~ 171 (298)
-+.+++..+ ..+..+
T Consensus 129 L~~~~~~~g-~~v~~v 143 (157)
T PF06574_consen 129 LKELGKEYG-FEVEVV 143 (157)
T ss_dssp HHHCTTTT--SEEEEE
T ss_pred HHHhcccCc-eEEEEE
Confidence 555555544 444333
No 132
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=41.63 E-value=2.9e+02 Score=25.57 Aligned_cols=74 Identities=18% Similarity=0.335 Sum_probs=42.1
Q ss_pred HHHHHHHHhCCCEEEEEcCCcccccCCCCccccc---ccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcC
Q 022367 89 LVANLITEAGANRVLACDLHSGQSMGYFDIPVDH---VYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLS 164 (298)
Q Consensus 89 ~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~---l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~ 164 (298)
++.++=++.| .+||++ .|.....++|.+|... +.-.+.+.+.|++...+..-++++-...|-+.-|..+++.+.
T Consensus 39 ~i~~ie~kr~-srvI~~-Ihrqe~~~~~giPi~~~I~i~dse~v~raI~~~~~~~~IdLii~TpGG~v~AA~~I~~~l~ 115 (285)
T PF01972_consen 39 LIREIEEKRG-SRVITL-IHRQERVSFLGIPIYRYIDIDDSEFVLRAIREAPKDKPIDLIIHTPGGLVDAAEQIARALR 115 (285)
T ss_pred HHHHHHHHhC-CEEEEE-EEeccccceeccccceeEcHhhHHHHHHHHHhcCCCCceEEEEECCCCcHHHHHHHHHHHH
Confidence 4444444444 677775 4665566777777533 334556667776542121223555555566666777887774
No 133
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=40.73 E-value=52 Score=32.70 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=50.3
Q ss_pred EEEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCCCeE-EEE--eeecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCC
Q 022367 144 VVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVA-EVM--NLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGA 220 (298)
Q Consensus 144 viv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~~-~~~--~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga 220 (298)
+.++....|-.....+.....+.++..+--.|+.+... +.+ .++.++... |++.|-+++||++...|...|.+.|.
T Consensus 336 ~gv~i~r~g~~~~~alr~~~~~vri~~il~qr~~~t~~~~l~~~~lP~~is~~-V~ll~p~~~tg~~~~~a~~~ll~~gv 414 (473)
T KOG4203|consen 336 CGVSIPRSGESMETALRAACKGVRIGKILIQRDEETGEPELHYEKLPKDISDR-VLLLDPVLATGNSAMMAIILLLDHGV 414 (473)
T ss_pred ccCCCCcchhHHHHHHHHHcCCceeeeeEeechhhccchhhhhhhCccccccc-eeeecchhhcchhHHHHHHHHHhCCC
Confidence 34555566666666666555446665544445433211 111 344456555 99999999999999999999999995
Q ss_pred C
Q 022367 221 R 221 (298)
Q Consensus 221 ~ 221 (298)
.
T Consensus 415 ~ 415 (473)
T KOG4203|consen 415 P 415 (473)
T ss_pred c
Confidence 4
No 134
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=40.41 E-value=46 Score=27.51 Aligned_cols=40 Identities=23% Similarity=0.446 Sum_probs=30.6
Q ss_pred CccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhc
Q 022367 200 DMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSS 242 (298)
Q Consensus 200 Dii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~ 242 (298)
|...+...+..|.+.|+.+|++.++.+. ..++..++.|.+
T Consensus 100 Dl~~~~~~i~~a~~~L~~aG~~~if~vS---~~~~eGi~eL~~ 139 (143)
T PF10662_consen 100 DLPSDDANIERAKKWLKNAGVKEIFEVS---AVTGEGIEELKD 139 (143)
T ss_pred cCccchhhHHHHHHHHHHcCCCCeEEEE---CCCCcCHHHHHH
Confidence 5555678899999999999999997766 456666666653
No 135
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=40.32 E-value=1e+02 Score=23.68 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=32.2
Q ss_pred EEeCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEee
Q 022367 20 VQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIP 68 (298)
Q Consensus 20 v~i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viP 68 (298)
......++|+.|+||-.....-+ . +.-+++.+++.|++.+.+++.
T Consensus 80 ~~~~~~~~gk~vliVDDvi~tG~-T---l~~~~~~L~~~g~~~v~~~vl 124 (125)
T PF00156_consen 80 IIDKEDIKGKRVLIVDDVIDTGG-T---LKEAIELLKEAGAKVVGVAVL 124 (125)
T ss_dssp EEESSSGTTSEEEEEEEEESSSH-H---HHHHHHHHHHTTBSEEEEEEE
T ss_pred ecccccccceeEEEEeeeEcccH-H---HHHHHHHHHhCCCcEEEEEEE
Confidence 34467889999999865543322 2 556677889999999887654
No 136
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=40.32 E-value=1.2e+02 Score=25.50 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=37.6
Q ss_pred ccceeeeeeCCCc-----e-E---EEeCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcC-CCeEEEEeec
Q 022367 5 LGKIKIKRFADGE-----I-Y---VQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRAS-AKNITAVIPY 69 (298)
Q Consensus 5 ~~~~~~~~F~dGE-----~-~---v~i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~-a~~i~~viPY 69 (298)
+..+....|-|+. . . ..+..++.|++|+||-.....-. -|..+++.+++.| ++++.++.-+
T Consensus 63 ~~~l~~~~y~~~~~~~~~~~~~~~~~l~~~v~gr~VLIVDDIidTG~----Tl~~~~~~L~~~G~~~~v~~avL~ 133 (176)
T PRK05205 63 VGELDITLYRDDLTKKGLHPQVKPTDIPFDIEGKRVILVDDVLYTGR----TIRAALDALFDYGRPARVQLAVLV 133 (176)
T ss_pred cceEEEEEeecCccccCcccccccccCCCCCCCCEEEEEecccCcHH----HHHHHHHHHHhcCCCcEEEEEEEE
Confidence 4555555665542 1 1 23445789999999966543322 2556678888888 6777665543
No 137
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=39.27 E-value=31 Score=29.76 Aligned_cols=44 Identities=36% Similarity=0.579 Sum_probs=37.4
Q ss_pred eeecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEecc
Q 022367 185 NLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAV 231 (298)
Q Consensus 185 ~~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l 231 (298)
.+.|+.+.+..+|||.+..| ...-++.+++.|-+-+|++-||--
T Consensus 24 Yll~d~~~~~AviIDPV~et---~~RD~qlikdLgl~LiYa~NTH~H 67 (237)
T KOG0814|consen 24 YLLGDHKTGKAVIIDPVLET---VSRDAQLIKDLGLDLIYALNTHVH 67 (237)
T ss_pred EEeeeCCCCceEEecchhhc---ccchHHHHHhcCceeeeeecceee
Confidence 46789999999999999965 556778889999999999999863
No 138
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=39.18 E-value=1.6e+02 Score=22.16 Aligned_cols=56 Identities=23% Similarity=0.208 Sum_probs=35.1
Q ss_pred CCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCc--cHHHHhhcCC-CCEEEEecCCC
Q 022367 191 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSP--PAIERLSSGL-FQEVIITNTIP 255 (298)
Q Consensus 191 ~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~--~a~~~l~~~~-i~~ii~tnti~ 255 (298)
.+.+|++||| .-.......+.|...| ..|..+ -++ .+.+.++... ++-+++--..|
T Consensus 4 ~~~~vLivdD---~~~~~~~~~~~l~~~g-~~v~~a-----~~g~~~al~~~~~~~~~dlii~D~~mp 62 (130)
T COG0784 4 SGLRVLVVDD---EPVNRRLLKRLLEDLG-YEVVEA-----ADGEEEALELLRELPQPDLILLDINMP 62 (130)
T ss_pred CCcEEEEEcC---CHHHHHHHHHHHHHcC-CeEEEe-----CChHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 5679999999 3344445556677777 222222 233 5778887763 67766666666
No 139
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=37.51 E-value=66 Score=29.41 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=30.5
Q ss_pred CCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEE
Q 022367 189 DVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 227 (298)
Q Consensus 189 ~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (298)
+++||+|+|+ -+|++-..++..|.+.|+++|.++.
T Consensus 122 ~~~~k~vlvl----GaGGaarai~~aL~~~G~~~i~I~n 156 (282)
T TIGR01809 122 PLAGFRGLVI----GAGGTSRAAVYALASLGVTDITVIN 156 (282)
T ss_pred ccCCceEEEE----cCcHHHHHHHHHHHHcCCCeEEEEe
Confidence 4678899876 6799999999999999999998875
No 140
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=36.98 E-value=68 Score=23.88 Aligned_cols=33 Identities=30% Similarity=0.388 Sum_probs=25.6
Q ss_pred CCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEE
Q 022367 191 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYAC 226 (298)
Q Consensus 191 ~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (298)
+++.++++.+ +|..-..++..|+++|-+.|+.+
T Consensus 60 ~~~~ivvyC~---~G~rs~~a~~~L~~~G~~~v~~l 92 (101)
T cd01518 60 KGKKVLMYCT---GGIRCEKASAYLKERGFKNVYQL 92 (101)
T ss_pred CCCEEEEECC---CchhHHHHHHHHHHhCCcceeee
Confidence 4677888864 78888888889999998776553
No 141
>PLN02527 aspartate carbamoyltransferase
Probab=36.59 E-value=3.5e+02 Score=25.12 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=25.7
Q ss_pred cCCCCCEEEEEeCccCchHHHHHHHHHHHHc-CCCEEEEEE
Q 022367 188 GDVKGKVAVMVDDMIDTAGTISKGAALLHQE-GAREVYACS 227 (298)
Q Consensus 188 g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~-Ga~~V~~~~ 227 (298)
|+++|.+|.+|=|... |.+....+..+... |+ .+.+++
T Consensus 147 g~l~g~kva~vGD~~~-~rv~~Sl~~~~~~~~g~-~v~~~~ 185 (306)
T PLN02527 147 GRLDGIKVGLVGDLAN-GRTVRSLAYLLAKYEDV-KIYFVA 185 (306)
T ss_pred CCcCCCEEEEECCCCC-ChhHHHHHHHHHhcCCC-EEEEEC
Confidence 5788999999999854 35556666666555 54 455555
No 142
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=35.51 E-value=73 Score=23.72 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=26.1
Q ss_pred CCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEE
Q 022367 191 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYAC 226 (298)
Q Consensus 191 ~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (298)
+++.++++.+ +|.....++..|++.|-..|+.+
T Consensus 57 ~~~~vv~~c~---~g~rs~~~~~~l~~~G~~~v~~l 89 (101)
T cd01528 57 PDKDIVVLCH---HGGRSMQVAQWLLRQGFENVYNL 89 (101)
T ss_pred CCCeEEEEeC---CCchHHHHHHHHHHcCCccEEEe
Confidence 4678888854 68888888999999998877654
No 143
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=35.15 E-value=59 Score=23.93 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=23.8
Q ss_pred CCCEEEEEeCccCchHH--HHHHHHHHHHcCCCEEEE
Q 022367 191 KGKVAVMVDDMIDTAGT--ISKGAALLHQEGAREVYA 225 (298)
Q Consensus 191 ~gk~ViIVDDii~TG~T--l~~a~~~Lk~~Ga~~V~~ 225 (298)
+++.++++.+ +|.+ ...++..|++.|-+.|+.
T Consensus 49 ~~~~ivl~c~---~G~~~~s~~aa~~L~~~G~~~v~~ 82 (92)
T cd01532 49 RDTPIVVYGE---GGGEDLAPRAARRLSELGYTDVAL 82 (92)
T ss_pred CCCeEEEEeC---CCCchHHHHHHHHHHHcCccCEEE
Confidence 3567888854 6653 577888999999988874
No 144
>PRK12342 hypothetical protein; Provisional
Probab=34.51 E-value=3.5e+02 Score=24.49 Aligned_cols=134 Identities=10% Similarity=0.049 Sum_probs=63.5
Q ss_pred eeeeeeCCCceEEEeCCCccCCeEEE--EecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeeccCcccccccccCCCch
Q 022367 8 IKIKRFADGEIYVQLQESVRGCHVFL--VQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESI 85 (298)
Q Consensus 8 ~~~~~F~dGE~~v~i~~~v~g~~v~i--iqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~~~~~~~ 85 (298)
+-+++=||-+ .+++.. .|. +.. +...-.|.+.+-+|..+-+. +.| .+|+++ - ++..+.+
T Consensus 5 V~vKqVPD~~-~v~~~~--~~~-l~r~~~~~~iNp~D~~AlE~AlrLk---~~g-~~Vtvl-s-~Gp~~a~--------- 65 (254)
T PRK12342 5 TCFKLVPEEQ-DIVVTP--ERT-LNFDNAEAKISQFDLNAIEAASQLA---TDG-DEIAAL-T-VGGSLLQ--------- 65 (254)
T ss_pred EEEEECcCCC-ceEECC--CCC-EEcCCCCccCChhhHHHHHHHHHHh---hcC-CEEEEE-E-eCCChHh---------
Confidence 3457778854 677763 232 110 01112345666666665544 344 355443 1 2221110
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCCcccccCCCCcccccccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCC
Q 022367 86 AAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSD 165 (298)
Q Consensus 86 ~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~ 165 (298)
..+++-+.| ++|+|+.+.+.=+ +..+ .|.+.....|+.++++..++.=-.=--+.|...-.....+|..|+
T Consensus 66 ~~~l~r~al-amGaD~avli~d~--~~~g-----~D~~ata~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg- 136 (254)
T PRK12342 66 NSKVRKDVL-SRGPHSLYLVQDA--QLEH-----ALPLDTAKALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQ- 136 (254)
T ss_pred HHHHHHHHH-HcCCCEEEEEecC--ccCC-----CCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhC-
Confidence 001112233 4688888876411 1111 244445677888877643321000011234444455677888897
Q ss_pred CCEE
Q 022367 166 APLA 169 (298)
Q Consensus 166 ~~~~ 169 (298)
.|+.
T Consensus 137 ~P~v 140 (254)
T PRK12342 137 LPVI 140 (254)
T ss_pred CCcE
Confidence 7763
No 145
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=34.50 E-value=2e+02 Score=27.11 Aligned_cols=41 Identities=24% Similarity=0.339 Sum_probs=35.2
Q ss_pred eecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEE
Q 022367 186 LIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACST 228 (298)
Q Consensus 186 ~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~t 228 (298)
..|.++|.+|.||=|+- -|.|...-++.|+..| .+|+.+.-
T Consensus 152 ~~G~~~gl~iaivGDlk-hsRva~S~~~~L~~~g-a~v~lvsP 192 (316)
T COG0540 152 EFGRLDGLKIAIVGDLK-HSRVAHSNIQALKRFG-AEVYLVSP 192 (316)
T ss_pred HhCCcCCcEEEEEcccc-chHHHHHHHHHHHHcC-CEEEEECc
Confidence 34789999999999986 6899999999999999 66777763
No 146
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=33.87 E-value=72 Score=23.75 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=26.4
Q ss_pred CCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEE
Q 022367 191 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYAC 226 (298)
Q Consensus 191 ~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (298)
+++.|++++ .+|.+...++..|+..|-+.|+.+
T Consensus 65 ~~~~ivv~c---~~g~~s~~~~~~l~~~G~~~v~~~ 97 (106)
T cd01519 65 KDKELIFYC---KAGVRSKAAAELARSLGYENVGNY 97 (106)
T ss_pred CCCeEEEEC---CCcHHHHHHHHHHHHcCCccceec
Confidence 467888885 478888889999999998877654
No 147
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=33.75 E-value=87 Score=29.76 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=31.5
Q ss_pred cCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEE
Q 022367 188 GDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 227 (298)
Q Consensus 188 g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (298)
|+++||+|+|| -+|.+-..+++.|.++|++.|.++-
T Consensus 170 ~~l~~k~vLvI----GaGem~~l~a~~L~~~g~~~i~v~n 205 (338)
T PRK00676 170 QKSKKASLLFI----GYSEINRKVAYYLQRQGYSRITFCS 205 (338)
T ss_pred CCccCCEEEEE----cccHHHHHHHHHHHHcCCCEEEEEc
Confidence 67899999986 5799999999999999998877765
No 148
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=33.28 E-value=1.7e+02 Score=26.31 Aligned_cols=60 Identities=13% Similarity=0.285 Sum_probs=38.8
Q ss_pred cceeeeeeCC----CceEEEeC--CCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeec
Q 022367 6 GKIKIKRFAD----GEIYVQLQ--ESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPY 69 (298)
Q Consensus 6 ~~~~~~~F~d----GE~~v~i~--~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY 69 (298)
..+.++.|-| ||+.+.-. .++.|++|+||-..... =--|..+++.+++.|+++|.++.-.
T Consensus 122 dfi~vsSY~~~~s~g~v~i~~~~~~~l~gk~VLIVDDIidT----G~Tl~~~~~~L~~~g~~~V~va~L~ 187 (241)
T PTZ00149 122 HYVRVKSYCNDESTGKLEIVSDDLSCLKDKHVLIVEDIIDT----GNTLVKFCEYLKKFEPKTIRIATLF 187 (241)
T ss_pred cEEEEEEccCCCcCCceEEecccccccCCCEEEEEEeEeCh----HHHHHHHHHHHHhcCCCEEEEEEEE
Confidence 5566666644 66666432 46899999998665332 1224455577889999999776633
No 149
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=32.99 E-value=70 Score=23.64 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=25.1
Q ss_pred CCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEE
Q 022367 191 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYAC 226 (298)
Q Consensus 191 ~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (298)
+++.|++ +|.+|.+...++..|++.|...++.+
T Consensus 53 ~~~~iv~---~c~~g~~s~~~~~~L~~~g~~~v~~l 85 (99)
T cd01527 53 GANAIIF---HCRSGMRTQQNAERLAAISAGEAYVL 85 (99)
T ss_pred CCCcEEE---EeCCCchHHHHHHHHHHcCCccEEEe
Confidence 3566666 47899988899999999998765543
No 150
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=32.96 E-value=83 Score=22.86 Aligned_cols=31 Identities=19% Similarity=0.061 Sum_probs=23.4
Q ss_pred CCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEE
Q 022367 192 GKVAVMVDDMIDTAGTISKGAALLHQEGAREVYAC 226 (298)
Q Consensus 192 gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (298)
+++++++. ++|.....+++.|++.|. .+..+
T Consensus 51 ~~~vvl~c---~~g~~a~~~a~~L~~~G~-~v~~l 81 (90)
T cd01524 51 DKEIIVYC---AVGLRGYIAARILTQNGF-KVKNL 81 (90)
T ss_pred CCcEEEEc---CCChhHHHHHHHHHHCCC-CEEEe
Confidence 45677874 468888888999999998 55443
No 151
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=32.33 E-value=60 Score=23.99 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=28.7
Q ss_pred ccCchHHHHHHHHHHHHcCCCEEEEEEEeccCC---ccHHHHhhcCCCCEEEEecC
Q 022367 201 MIDTAGTISKGAALLHQEGAREVYACSTHAVFS---PPAIERLSSGLFQEVIITNT 253 (298)
Q Consensus 201 ii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~---~~a~~~l~~~~i~~ii~tnt 253 (298)
+++|++| ++.|++.|... .. .|+-.. ++..+.+.+..++-|+.|-+
T Consensus 16 i~AT~gT----a~~L~~~Gi~~-~~--~~~ki~~~~~~i~~~i~~g~id~VIn~~~ 64 (90)
T smart00851 16 LVATGGT----AKFLREAGLPV-KT--LHPKVHGGILAILDLIKNGEIDLVINTLY 64 (90)
T ss_pred EEEccHH----HHHHHHCCCcc-ee--ccCCCCCCCHHHHHHhcCCCeEEEEECCC
Confidence 4568888 56788888642 11 122222 23678888888999987643
No 152
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=32.19 E-value=1.1e+02 Score=24.14 Aligned_cols=50 Identities=18% Similarity=0.178 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEecCCC
Q 022367 205 AGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIP 255 (298)
Q Consensus 205 G~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tnti~ 255 (298)
-..+.+.++.|++.|...+.+++ -|--.+.-.+++.+.+++.+|-+.|-+
T Consensus 64 ~~~~~~~~~~L~~~~~~~i~i~~-GG~~~~~~~~~~~~~G~d~~~~~~~~~ 113 (122)
T cd02071 64 MTLFPEVIELLRELGAGDILVVG-GGIIPPEDYELLKEMGVAEIFGPGTSI 113 (122)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEE-ECCCCHHHHHHHHHCCCCEEECCCCCH
Confidence 34567788899999886665554 232233446777788999999877754
No 153
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=30.94 E-value=68 Score=27.60 Aligned_cols=25 Identities=12% Similarity=-0.063 Sum_probs=17.7
Q ss_pred cCchHHHHHHHHHHHHcCCCEEEEE
Q 022367 202 IDTAGTISKGAALLHQEGAREVYAC 226 (298)
Q Consensus 202 i~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (298)
-+||.+=.+.++.+..+||..+.+.
T Consensus 26 ~SSG~~G~~lA~~~~~~Ga~V~li~ 50 (185)
T PF04127_consen 26 RSSGKMGAALAEEAARRGAEVTLIH 50 (185)
T ss_dssp S--SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCcCHHHHHHHHHHHHCCCEEEEEe
Confidence 5799999999999999999754443
No 154
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=30.46 E-value=1.6e+02 Score=26.80 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=51.5
Q ss_pred CCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHH----HHhhcCCCCEEEEecCCCCcc
Q 022367 191 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAI----ERLSSGLFQEVIITNTIPVSE 258 (298)
Q Consensus 191 ~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~----~~l~~~~i~~ii~tnti~~~~ 258 (298)
+|++|.++=. +.+-+.++...|++..+.-..+.+-||-|+..-. ++|..++.|-++|-...|..+
T Consensus 107 ~~~~vfllGg---kp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdil~VgmG~P~QE 175 (253)
T COG1922 107 EGKRVFLLGG---KPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPDILLVGMGVPRQE 175 (253)
T ss_pred cCceEEEecC---CHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcCCCEEEEeCCCchhH
Confidence 4677777643 6778889999999998876666666799987544 677789999999999999864
No 155
>PRK08373 aspartate kinase; Validated
Probab=30.11 E-value=4.1e+02 Score=25.18 Aligned_cols=75 Identities=16% Similarity=0.138 Sum_probs=44.3
Q ss_pred CCeEEEEecCCCCCchhHHHHHHHHH-------------HHHhcCCCeEEE---------EeeccCccc-ccccccCCCc
Q 022367 28 GCHVFLVQPSCPPANENIMELLVMID-------------ACRRASAKNITA---------VIPYFGYAR-ADRKTQGRES 84 (298)
Q Consensus 28 g~~v~iiqs~~~~~~~~l~ell~~~~-------------a~r~~~a~~i~~---------viPY~~YsR-qdr~~~~~~~ 84 (298)
|.++++|-|......|.|+++.-..+ .+++.+...-.+ -+..++-.| +|....-||-
T Consensus 32 ~~~vvVVVSA~~gvTd~L~~l~~~~~~~~l~~i~~~h~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~~~~D~ils~GE~ 111 (341)
T PRK08373 32 ENEVVVVVSALKGVTDKLLKLAETFDKEALEEIEEIHEEFAKRLGIDLEILSPYLKKLFNSRPDLPSEALRDYILSFGER 111 (341)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHhhccCChHHHHHHHHHHHH
Confidence 56677776766667788877754322 112222110000 011223223 3666667999
Q ss_pred hHHHHHHHHHHHhCCCEE
Q 022367 85 IAAKLVANLITEAGANRV 102 (298)
Q Consensus 85 ~~a~~va~ll~~~g~d~i 102 (298)
+|+.+++..|++.|++..
T Consensus 112 lSa~lla~~L~~~Gi~a~ 129 (341)
T PRK08373 112 LSAVLFAEALENEGIKGK 129 (341)
T ss_pred HHHHHHHHHHHHCCCceE
Confidence 999999999999998766
No 156
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=29.94 E-value=4.8e+02 Score=25.30 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=25.9
Q ss_pred CCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEE
Q 022367 190 VKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 227 (298)
Q Consensus 190 v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (298)
+.||+|.|+-| .......++.|.+.|...+.+.+
T Consensus 298 l~gkrv~v~g~----~~~~~~l~~~L~elG~~~~~v~~ 331 (429)
T cd03466 298 NFGRKAAIYGE----PDFVVAITRFVLENGMVPVLIAT 331 (429)
T ss_pred cCCCEEEEEcC----HHHHHHHHHHHHHCCCEEEEEEe
Confidence 57999998875 45667778889999988755443
No 157
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=29.93 E-value=2.1e+02 Score=24.08 Aligned_cols=64 Identities=22% Similarity=0.270 Sum_probs=36.6
Q ss_pred CCcccceeeeeeCCCceEEEeCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeeccC
Q 022367 2 GLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFG 71 (298)
Q Consensus 2 ~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~ 71 (298)
|.+..-++-.+...|+..... .+++|+.|+||-.....- . -+.-.++.+|++|| ++..++-.+-
T Consensus 79 ~~p~~~~rK~~k~~g~~~~~~-g~~~g~~VlIVDDvi~TG-~---T~~~~~~~l~~~Ga-~v~~~~~~vd 142 (170)
T PRK13811 79 GKPYAIIRKEAKDHGKAGLII-GDVKGKRVLLVEDVTTSG-G---SALYGIEQLRAAGA-VVDDVVTVVD 142 (170)
T ss_pred CCCEEEEecCCCCCCCcceEE-cccCCCEEEEEEeccccc-H---HHHHHHHHHHHCCC-eEEEEEEEEE
Confidence 444443333334456544433 458999999996543321 2 25567788889997 4444444443
No 158
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=29.92 E-value=1.1e+02 Score=29.99 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=30.6
Q ss_pred CCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeeccC
Q 022367 24 ESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFG 71 (298)
Q Consensus 24 ~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~ 71 (298)
+.+.|++|+||-..... -.. +.-+++.||++||++|.+.+..=+
T Consensus 336 ~~v~gK~VlLVDDvitT-G~T---l~~a~~~Lr~aGA~~V~v~~~hp~ 379 (445)
T PRK08525 336 KVLEGKRIVVIDDSIVR-GTT---SKKIVSLLRAAGAKEIHLRIACPE 379 (445)
T ss_pred cccCCCeEEEEecccCc-HHH---HHHHHHHHHhcCCCEEEEEEECCC
Confidence 44899999998554222 122 335778999999999998765444
No 159
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=29.88 E-value=1.7e+02 Score=28.68 Aligned_cols=41 Identities=29% Similarity=0.315 Sum_probs=29.3
Q ss_pred CCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEee
Q 022367 24 ESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIP 68 (298)
Q Consensus 24 ~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viP 68 (298)
..++|+.|++|......- . -+--+++.||++||+.|.+.+.
T Consensus 334 ~~~~gk~v~lvDD~ittG-~---T~~~~~~~l~~~ga~~v~~~~~ 374 (442)
T TIGR01134 334 EVFRGKRVVLVDDSIVRG-T---TSRQIVKMLRDAGAKEVHVRIA 374 (442)
T ss_pred ccCCCCEEEEEecccccc-H---HHHHHHHHHHHcCCcEEEEEEc
Confidence 457899999985432211 2 2445678999999999998876
No 160
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=29.83 E-value=4.6e+02 Score=24.37 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=25.3
Q ss_pred ecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEE
Q 022367 187 IGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 227 (298)
Q Consensus 187 ~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (298)
.|+++|++|.+|=|..- +++....+..+...|+ .+.+++
T Consensus 151 ~G~l~g~kv~~vGD~~~-~~v~~Sl~~~~~~~g~-~~~~~~ 189 (305)
T PRK00856 151 FGRLEGLKVAIVGDIKH-SRVARSNIQALTRLGA-EVRLIA 189 (305)
T ss_pred hCCCCCCEEEEECCCCC-CcHHHHHHHHHHHcCC-EEEEEC
Confidence 36789999999998731 2444444555666686 455555
No 161
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=29.37 E-value=53 Score=32.40 Aligned_cols=36 Identities=31% Similarity=0.439 Sum_probs=21.1
Q ss_pred CCccCCeEEEEecCCCCCchhHH---HHHHHHHHHHhcCCCeEEEE
Q 022367 24 ESVRGCHVFLVQPSCPPANENIM---ELLVMIDACRRASAKNITAV 66 (298)
Q Consensus 24 ~~v~g~~v~iiqs~~~~~~~~l~---ell~~~~a~r~~~a~~i~~v 66 (298)
+.++||.|++|- |.++ -.-.+++.+|++||+.|.+-
T Consensus 344 ~~v~GKrVvlVD-------DSIVRGTTsr~IV~mlReAGAkEVHvr 382 (470)
T COG0034 344 EVVKGKRVVLVD-------DSIVRGTTSRRIVQMLREAGAKEVHVR 382 (470)
T ss_pred HHhCCCeEEEEc-------cccccCccHHHHHHHHHHhCCCEEEEE
Confidence 456788887762 2221 12344556677888777764
No 162
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=29.22 E-value=1.8e+02 Score=30.02 Aligned_cols=56 Identities=13% Similarity=0.029 Sum_probs=38.0
Q ss_pred CCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccC----CccHHHHhhcCCCCEE
Q 022367 189 DVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVF----SPPAIERLSSGLFQEV 248 (298)
Q Consensus 189 ~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~----~~~a~~~l~~~~i~~i 248 (298)
+..||+|+||- .|.|...++..+.+.|+++|.++..+.-. +..-.+.+.+.+++-+
T Consensus 465 ~~~gk~VvVIG----gG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~~~~~~~Gv~~~ 524 (654)
T PRK12769 465 NTAGLNVVVLG----GGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFE 524 (654)
T ss_pred cCCCCeEEEEC----CcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHHHHHHHcCCeEE
Confidence 35789999996 78888888888889999988877644322 1122344555566633
No 163
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=29.20 E-value=1.3e+02 Score=26.58 Aligned_cols=64 Identities=20% Similarity=0.407 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCC-CeEEE-EeeccCcccc-----------cccccCCCchHHHHHHHHHHHhCCCEEEEEcCCcccc
Q 022367 47 ELLVMIDACRRASA-KNITA-VIPYFGYARA-----------DRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQS 112 (298)
Q Consensus 47 ell~~~~a~r~~~a-~~i~~-viPY~~YsRq-----------dr~~~~~~~~~a~~va~ll~~~g~d~ii~vdlHs~~~ 112 (298)
|+.--.++.+-.+- .-+++ -.||+.|+|+ +....++.+++...=+.||..+|++.+|. =||.+.
T Consensus 22 eii~~ln~a~~~~~vevvi~pP~~Yl~~ak~~l~~~i~v~aQn~~~~k~GafTGEiS~~mlkd~G~~wVIl--GHSERR 98 (247)
T KOG1643|consen 22 EIIKTLNAAKLPANVEVVIAPPAPYLDYAKSKLKPDIGVAAQNCYKVKSGAFTGEISAEMLKDLGAEWVIL--GHSERR 98 (247)
T ss_pred HHHHHhhhccCCCCCcEEEeCChhHHHHHHHhCCccceeecceeeeccCccccCccCHHHHHhCCCCEEEe--cchhhh
Confidence 44444444443332 23322 2678888887 33334567888888899999999999886 477653
No 164
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=29.19 E-value=3.3e+02 Score=22.91 Aligned_cols=59 Identities=29% Similarity=0.300 Sum_probs=36.5
Q ss_pred cCCCCCEEEEEeCccCchHHHHH-HHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEecCCCC
Q 022367 188 GDVKGKVAVMVDDMIDTAGTISK-GAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPV 256 (298)
Q Consensus 188 g~v~gk~ViIVDDii~TG~Tl~~-a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tnti~~ 256 (298)
++++||+|+||= .|.+... +++.|++.|++ |.++-- -..+-.+.+.+ .|-||++-.-|+
T Consensus 40 ~~l~gk~vlViG----~G~~~G~~~a~~L~~~g~~-V~v~~r---~~~~l~~~l~~--aDiVIsat~~~~ 99 (168)
T cd01080 40 IDLAGKKVVVVG----RSNIVGKPLAALLLNRNAT-VTVCHS---KTKNLKEHTKQ--ADIVIVAVGKPG 99 (168)
T ss_pred CCCCCCEEEEEC----CcHHHHHHHHHHHhhCCCE-EEEEEC---CchhHHHHHhh--CCEEEEcCCCCc
Confidence 478899999874 4666555 88899999984 554442 22333344543 466665544443
No 165
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=29.14 E-value=2.4e+02 Score=22.85 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecc-------CcccccccccCCCchHHHHHHHHHHHhCCCEEEEEcCCcccccCC
Q 022367 43 ENIMELLVMIDACRRASAKNITAVIPYF-------GYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGY 115 (298)
Q Consensus 43 ~~l~ell~~~~a~r~~~a~~i~~viPY~-------~YsRqdr~~~~~~~~~a~~va~ll~~~g~d~ii~vdlHs~~~~~~ 115 (298)
...=.|-++++.|++.|++-..+++|-- +++++.|. -.-+-+..++.+.|+ =.+|+.+..-..+
T Consensus 33 pEy~Dl~l~L~~~k~~g~~~lfVi~PvNg~wydytG~~~~~r~------~~y~kI~~~~~~~gf---~v~D~s~~~y~~y 103 (130)
T PF04914_consen 33 PEYDDLQLLLDVCKELGIDVLFVIQPVNGKWYDYTGLSKEMRQ------EYYKKIKYQLKSQGF---NVADFSDDEYEPY 103 (130)
T ss_dssp THHHHHHHHHHHHHHTT-EEEEEE----HHHHHHTT--HHHHH------HHHHHHHHHHHTTT-----EEE-TTGTTSTT
T ss_pred ccHHHHHHHHHHHHHcCCceEEEecCCcHHHHHHhCCCHHHHH------HHHHHHHHHHHHCCC---EEEecccCCCCCc
Confidence 4566788899999999998888888844 44555443 123456778888886 4567777666655
Q ss_pred CCcccccc
Q 022367 116 FDIPVDHV 123 (298)
Q Consensus 116 f~i~~~~l 123 (298)
|=....|+
T Consensus 104 fm~D~iHl 111 (130)
T PF04914_consen 104 FMQDTIHL 111 (130)
T ss_dssp SBSSSSSB
T ss_pred eeeecccC
Confidence 53233344
No 166
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=28.91 E-value=2.1e+02 Score=29.23 Aligned_cols=16 Identities=19% Similarity=0.038 Sum_probs=11.9
Q ss_pred EechHHHHHHHHHHHc
Q 022367 268 LSVANLLGETIWRVHD 283 (298)
Q Consensus 268 isva~lla~~i~~~~~ 283 (298)
..||=.|+.++++...
T Consensus 190 ~Gvaf~l~~al~~~l~ 205 (575)
T PRK11070 190 VGVAFYLMLALRAFLR 205 (575)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4577788999887653
No 167
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=28.65 E-value=2.6e+02 Score=23.41 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=29.0
Q ss_pred CceEEEeC--CCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeE
Q 022367 16 GEIYVQLQ--ESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNI 63 (298)
Q Consensus 16 GE~~v~i~--~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i 63 (298)
|+..+.+. ..++|++|+||-.....-. -+.-+++.++++|++.+
T Consensus 100 ~~~~l~l~~~~~~~g~~VLIVDDivtTG~----Tl~~~~~~l~~~Ga~~v 145 (175)
T PRK02304 100 GTDTLEIHKDAIKPGDRVLIVDDLLATGG----TLEAAIKLLERLGAEVV 145 (175)
T ss_pred CceEEEEchhhcCCCCEEEEEeCCccccH----HHHHHHHHHHHcCCEEE
Confidence 34444443 3378999999976644322 25667778889999765
No 168
>PLN02160 thiosulfate sulfurtransferase
Probab=28.35 E-value=94 Score=25.04 Aligned_cols=33 Identities=12% Similarity=0.060 Sum_probs=26.3
Q ss_pred CCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEE
Q 022367 191 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYAC 226 (298)
Q Consensus 191 ~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (298)
++++++++ |.+|.+-..++..|++.|-..|+.+
T Consensus 80 ~~~~Iivy---C~sG~RS~~Aa~~L~~~G~~~v~~l 112 (136)
T PLN02160 80 PADDILVG---CQSGARSLKATTELVAAGYKKVRNK 112 (136)
T ss_pred CCCcEEEE---CCCcHHHHHHHHHHHHcCCCCeeec
Confidence 35567776 6799999999999999998877554
No 169
>PRK05320 rhodanese superfamily protein; Provisional
Probab=28.12 E-value=1e+02 Score=27.86 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=29.0
Q ss_pred CCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEE
Q 022367 190 VKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYA 225 (298)
Q Consensus 190 v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~ 225 (298)
+++|.|+++ |++|.....|++.|++.|-+.|+-
T Consensus 173 ~kdk~Ivvy---C~~G~Rs~~Aa~~L~~~Gf~~V~~ 205 (257)
T PRK05320 173 LAGKTVVSF---CTGGIRCEKAAIHMQEVGIDNVYQ 205 (257)
T ss_pred cCCCeEEEE---CCCCHHHHHHHHHHHHcCCcceEE
Confidence 478889988 899999999999999999988764
No 170
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=28.11 E-value=1.1e+02 Score=23.11 Aligned_cols=33 Identities=21% Similarity=0.056 Sum_probs=24.7
Q ss_pred CCCEEEEEeCccCchHHHHHHHHHHHHcCCCE-EEEE
Q 022367 191 KGKVAVMVDDMIDTAGTISKGAALLHQEGARE-VYAC 226 (298)
Q Consensus 191 ~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~-V~~~ 226 (298)
+++.++++ |.+|..-..++..|++.|-.. ++.+
T Consensus 65 ~~~~ivv~---C~~G~rs~~a~~~L~~~G~~~~v~~l 98 (109)
T cd01533 65 PRTPIVVN---CAGRTRSIIGAQSLINAGLPNPVAAL 98 (109)
T ss_pred CCCeEEEE---CCCCchHHHHHHHHHHCCCCcceeEe
Confidence 35677777 678887777899999999865 5443
No 171
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=28.04 E-value=63 Score=30.18 Aligned_cols=50 Identities=10% Similarity=0.021 Sum_probs=33.9
Q ss_pred chHHHHHHHHHHHHcCCCEEEEEE--EeccCCc-cHHHHhhcCCCCEEEEecCC
Q 022367 204 TAGTISKGAALLHQEGAREVYACS--THAVFSP-PAIERLSSGLFQEVIITNTI 254 (298)
Q Consensus 204 TG~Tl~~a~~~Lk~~Ga~~V~~~~--tH~l~~~-~a~~~l~~~~i~~ii~tnti 254 (298)
-..|+.+..+..++.|.+ +.+++ ++|-+.+ -..+.|.+++++-.+++|+-
T Consensus 128 ~S~~v~~~l~~A~~~~k~-~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Dsa 180 (301)
T COG1184 128 FSKTVLEVLKTAADRGKR-FKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDSA 180 (301)
T ss_pred CcHHHHHHHHHhhhcCCc-eEEEEEcCCCcchHHHHHHHHHHcCCceEEEechH
Confidence 467777777777777754 44444 4665544 24566778888888888875
No 172
>PLN02962 hydroxyacylglutathione hydrolase
Probab=28.02 E-value=84 Score=28.35 Aligned_cols=48 Identities=23% Similarity=0.343 Sum_probs=33.0
Q ss_pred CCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCc-cHHHHhh
Q 022367 191 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSP-PAIERLS 241 (298)
Q Consensus 191 ~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~-~a~~~l~ 241 (298)
.++.++|||-.- .......+.+++.|.+-..+++||+-+.- ++...|.
T Consensus 34 ~~~~avlIDP~~---~~~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~ 82 (251)
T PLN02962 34 PDKPALLIDPVD---KTVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLK 82 (251)
T ss_pred CCCEEEEECCCC---CcHHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHH
Confidence 467899999632 13344567888889888899999997764 3334443
No 173
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=27.91 E-value=1.5e+02 Score=26.34 Aligned_cols=43 Identities=16% Similarity=0.114 Sum_probs=28.0
Q ss_pred eeecCCCCCEEEEEeCccCchHHHHHH-HHHHHHcCCCEEEEEEEeccCCcc
Q 022367 185 NLIGDVKGKVAVMVDDMIDTAGTISKG-AALLHQEGAREVYACSTHAVFSPP 235 (298)
Q Consensus 185 ~~~g~v~gk~ViIVDDii~TG~Tl~~a-~~~Lk~~Ga~~V~~~~tH~l~~~~ 235 (298)
.+.-+++|++|+|| .||.+..- ++.|.+.||+ |.+++ |-+++.
T Consensus 18 pi~l~~~~~~VLVV-----GGG~VA~RK~~~Ll~~gA~-VtVVa--p~i~~e 61 (223)
T PRK05562 18 FISLLSNKIKVLII-----GGGKAAFIKGKTFLKKGCY-VYILS--KKFSKE 61 (223)
T ss_pred eeEEECCCCEEEEE-----CCCHHHHHHHHHHHhCCCE-EEEEc--CCCCHH
Confidence 33346789999998 56665543 5667788866 66666 445544
No 174
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=27.83 E-value=41 Score=29.49 Aligned_cols=90 Identities=19% Similarity=0.153 Sum_probs=50.6
Q ss_pred EEeeCCChHHHHHHHHHHcCCCCEEEEEeeecCCCeEE--EEeeecCCCCCEEEEEeCc--cCchHHHHHHHHHHHHcCC
Q 022367 145 VVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAE--VMNLIGDVKGKVAVMVDDM--IDTAGTISKGAALLHQEGA 220 (298)
Q Consensus 145 iv~p~~Gg~~~a~~la~~L~~~~~~~~~k~r~~~~~~~--~~~~~g~v~gk~ViIVDDi--i~TG~Tl~~a~~~Lk~~Ga 220 (298)
+++.|.--...+..+++.++ +...+-|--. .... .......++.....|+-|. .|.|.|+..+++.+.+.|+
T Consensus 2 ivALD~~~~~~a~~i~~~~~--~~v~~iKvg~--~l~~~~g~~~i~~l~~~~~~i~~DlK~~DIg~tv~~~~~~~~~~ga 77 (216)
T cd04725 2 IVALDPPDEEFALALIDALG--PYVCAVKVGL--ELFEAAGPEIVKELRELGFLVFLDLKLGDIPNTVAAAAEALLGLGA 77 (216)
T ss_pred EEEeCCCCHHHHHHHHHhcC--CcccEEEECH--HHHHhcCHHHHHHHHHCCCcEEEEeecCchHHHHHHHHHHHHhcCC
Confidence 56777777778888888776 2211122110 0000 0001112222224566665 7889999999998888775
Q ss_pred CEEEEEEEeccCCccHHHHhh
Q 022367 221 REVYACSTHAVFSPPAIERLS 241 (298)
Q Consensus 221 ~~V~~~~tH~l~~~~a~~~l~ 241 (298)
. .++.|+....+..+.+.
T Consensus 78 d---~~Tvh~~~G~~~l~~~~ 95 (216)
T cd04725 78 D---AVTVHPYGGSDMLKAAL 95 (216)
T ss_pred C---EEEECCcCCHHHHHHHH
Confidence 4 56667776655555543
No 175
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=27.78 E-value=1.9e+02 Score=26.91 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=40.7
Q ss_pred eecCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccC-CccHHHHhh
Q 022367 186 LIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVF-SPPAIERLS 241 (298)
Q Consensus 186 ~~g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~-~~~a~~~l~ 241 (298)
+.|.+.||+|+||--=-..........+.|+.+|+.....+..-.-| ++...+++.
T Consensus 77 v~g~L~g~~V~vV~~p~a~~~~~~~v~~~L~~AGA~v~g~i~lt~~~~d~~~~~~l~ 133 (308)
T PF11382_consen 77 VAGRLTGRSVAVVTLPGADDEDVDAVRELLEQAGATVTGRITLTDKFLDPEQADKLR 133 (308)
T ss_pred hcCccCCCEEEEEEcCCCChHHHHHHHHHHHHCCCeEEEEEEEchhhcChhhHHHHH
Confidence 45789999999999555567888999999999999976666533333 444444444
No 176
>PRK00035 hemH ferrochelatase; Reviewed
Probab=27.50 E-value=5e+02 Score=24.08 Aligned_cols=69 Identities=12% Similarity=0.075 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHH-----------hhcCCCCEEEEecCCCCcccCCCCCeeEEechH
Q 022367 204 TAGTISKGAALLHQEGAREVYACSTHAVFSPPAIER-----------LSSGLFQEVIITNTIPVSERNYFPQLTILSVAN 272 (298)
Q Consensus 204 TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~-----------l~~~~i~~ii~tnti~~~~~~~~~ki~~isva~ 272 (298)
+|-++..+.+.|.+.|.++|.+++. + |..+..|. +++.|.+......++-..+ ....
T Consensus 246 l~P~~~~~l~~l~~~g~k~V~v~P~-~-Fv~D~lEtl~ei~~e~~~~~~~~G~~~~~~~~~ln~~~----------~~i~ 313 (333)
T PRK00035 246 LEPYTDDTLEELAEKGVKKVVVVPP-G-FVSDHLETLEEIDIEYREIAEEAGGEEFRRIPCLNDSP----------EFIE 313 (333)
T ss_pred CCCCHHHHHHHHHHcCCCeEEEECC-e-eeccchhHHHHHHHHHHHHHHHcCCceEEECCCCCCCH----------HHHH
Confidence 5778889999999999999888873 3 44355443 3345565555554443221 1334
Q ss_pred HHHHHHHHHHcC
Q 022367 273 LLGETIWRVHDD 284 (298)
Q Consensus 273 lla~~i~~~~~~ 284 (298)
.|++.+++...+
T Consensus 314 ~l~~~v~~~~~~ 325 (333)
T PRK00035 314 ALADLVRENLQG 325 (333)
T ss_pred HHHHHHHHHhcC
Confidence 555656654444
No 177
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=27.34 E-value=2.5e+02 Score=24.13 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=25.5
Q ss_pred CccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEE
Q 022367 25 SVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAV 66 (298)
Q Consensus 25 ~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~v 66 (298)
..+|+.|+||......- .. +.-+++.+++.|++.+.++
T Consensus 110 ~~~g~~VliVDDvi~tG-~T---l~~~~~~l~~~Ga~~v~~~ 147 (202)
T PRK00455 110 RLFGKRVLVVEDVITTG-GS---VLEAVEAIRAAGAEVVGVA 147 (202)
T ss_pred CCCCCEEEEEecccCCc-HH---HHHHHHHHHHcCCEEEEEE
Confidence 45799999997654332 22 4556788889998765543
No 178
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=27.11 E-value=4.9e+02 Score=25.57 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=33.1
Q ss_pred HHHHHHHHHhc---CCCeEEEEeecc--CcccccccccCCCchHHHHHHHHHHHhCCCEEEEEcCCcc
Q 022367 48 LLVMIDACRRA---SAKNITAVIPYF--GYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSG 110 (298)
Q Consensus 48 ll~~~~a~r~~---~a~~i~~viPY~--~YsRqdr~~~~~~~~~a~~va~ll~~~g~d~ii~vdlHs~ 110 (298)
+--.++++++. ...++++|+.=+ -|+|.++. -+.+++.+...++|.|+.+..++.
T Consensus 353 ~~aaL~~l~~~~~~~~~r~i~V~G~m~elg~~~~~~--------h~~~~~~~~~~~~d~v~~~G~~~~ 412 (479)
T PRK14093 353 MAAALGVLGRAPVGPQGRRIAVLGDMLELGPRGPEL--------HRGLAEAIRANAIDLVFCCGPLMR 412 (479)
T ss_pred HHHHHHHHHhhhccCCCCEEEEECChHHcCcHHHHH--------HHHHHHHHHHcCCCEEEEEchhHH
Confidence 34444555553 234556666432 34544332 247888888889999999986553
No 179
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=26.95 E-value=1.7e+02 Score=24.72 Aligned_cols=78 Identities=17% Similarity=0.150 Sum_probs=49.4
Q ss_pred CchHHHHHHHHHHHHcCCCEEEEEEEeccCCc--------cHHHHhhcCCCCEEEEecCCCCcccC--CCCCeeEEechH
Q 022367 203 DTAGTISKGAALLHQEGAREVYACSTHAVFSP--------PAIERLSSGLFQEVIITNTIPVSERN--YFPQLTILSVAN 272 (298)
Q Consensus 203 ~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~--------~a~~~l~~~~i~~ii~tnti~~~~~~--~~~ki~~isva~ 272 (298)
+||.|...+.+++... -+|.+++-|.-|.. ...+.|.+-+ ..+.|.|.-..--+ -..|+-=++=-.
T Consensus 36 ~tG~tA~k~lemveg~--lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erG--a~v~~~sHalSg~eRsis~kfGG~~p~e 111 (186)
T COG1751 36 STGYTALKALEMVEGD--LKVVVVTHHAGFEEKGTQEMDEEVRKELKERG--AKVLTQSHALSGVERSISRKFGGYSPLE 111 (186)
T ss_pred cccHHHHHHHHhcccC--ceEEEEEeecccccCCceecCHHHHHHHHHcC--ceeeeehhhhhcchhhhhhhcCCcchHH
Confidence 5899988888887543 56777777765544 3455565544 34556665433111 234677777778
Q ss_pred HHHHHHHHHHcC
Q 022367 273 LLGETIWRVHDD 284 (298)
Q Consensus 273 lla~~i~~~~~~ 284 (298)
++||.+|-.-.|
T Consensus 112 iiAetLR~fg~G 123 (186)
T COG1751 112 IIAETLRMFGQG 123 (186)
T ss_pred HHHHHHHHhcCC
Confidence 999999955444
No 180
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=26.95 E-value=1.5e+02 Score=26.39 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=45.8
Q ss_pred CCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeeccCcccccccccCCCchHHHHHHHHHHHhCCCEEE
Q 022367 24 ESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVL 103 (298)
Q Consensus 24 ~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~~~~~~~~a~~va~ll~~~g~d~ii 103 (298)
-+.+|+.|+|+-....- -. -....+.+||..++++|.+..|-.| +..+..|.+- +|.++
T Consensus 120 ~~~~g~~VIlVDDGiAT--Ga--tm~aAi~~~r~~~~~~IviAVPV~p----------------~~a~~~l~s~-~D~vv 178 (220)
T COG1926 120 PSLKGRTVILVDDGIAT--GA--TMKAAVRALRAKGPKEIVIAVPVAP----------------EDAAAELESE-ADEVV 178 (220)
T ss_pred CCCCCCEEEEEeCCcch--hH--HHHHHHHHHHhcCCceEEEEcccCC----------------HHHHHHHHhh-cCeEE
Confidence 46779999998553221 12 2456789999999999999998766 2455666553 68888
Q ss_pred EEcCCc
Q 022367 104 ACDLHS 109 (298)
Q Consensus 104 ~vdlHs 109 (298)
.+..-.
T Consensus 179 c~~~P~ 184 (220)
T COG1926 179 CLYMPA 184 (220)
T ss_pred EEcCCc
Confidence 877544
No 181
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=26.85 E-value=1.4e+02 Score=22.73 Aligned_cols=31 Identities=6% Similarity=0.053 Sum_probs=23.1
Q ss_pred CCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEE
Q 022367 192 GKVAVMVDDMIDTAGTISKGAALLHQEGAREVYA 225 (298)
Q Consensus 192 gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~ 225 (298)
++.++++ |.+|.....++..|++.|-..+..
T Consensus 58 ~~~vvly---C~~G~rS~~aa~~L~~~G~~~v~~ 88 (101)
T TIGR02981 58 NDTVKLY---CNAGRQSGMAKDILLDMGYTHAEN 88 (101)
T ss_pred CCeEEEE---eCCCHHHHHHHHHHHHcCCCeEEe
Confidence 4556666 667888888888888888877654
No 182
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=26.68 E-value=1.5e+02 Score=22.86 Aligned_cols=48 Identities=23% Similarity=0.247 Sum_probs=29.9
Q ss_pred cCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhc-CCCCEEEEecC
Q 022367 202 IDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSS-GLFQEVIITNT 253 (298)
Q Consensus 202 i~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~-~~i~~ii~tnt 253 (298)
+.|++|.. .|++.|.....+.-.+.--.++..+.+.+ ..++-||.|-+
T Consensus 29 ~AT~gTa~----~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~ 77 (112)
T cd00532 29 FATGGTSR----VLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRD 77 (112)
T ss_pred EECcHHHH----HHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCC
Confidence 45777744 46778866433332221023568888988 89999987744
No 183
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=26.66 E-value=7.1e+02 Score=26.44 Aligned_cols=190 Identities=12% Similarity=0.100 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhcCC-CeEEEEeeccCcccccccccCCC--chHHHHHHHHHHHhCCCEEEEEcCCcccccCCCC-cccc
Q 022367 46 MELLVMIDACRRASA-KNITAVIPYFGYARADRKTQGRE--SIAAKLVANLITEAGANRVLACDLHSGQSMGYFD-IPVD 121 (298)
Q Consensus 46 ~ell~~~~a~r~~~a-~~i~~viPY~~YsRqdr~~~~~~--~~~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~-i~~~ 121 (298)
-.+.-.++++++... +++++|+.=+ .. .|+ .-.-..+++.+...++++++.+.-+.......++ .+..
T Consensus 343 ~s~~aaL~~l~~~~~~~~~ilIlG~m-------~e-lG~~~~~~~~~l~~~l~~~~i~~vi~~G~~~~~~~~~~~~~~~~ 414 (822)
T PRK11930 343 QSLDIALDFLNRRSQSKKKTLILSDI-------LQ-SGQSPEELYRKVAQLISKRGIDRLIGIGEEISSEASKFEGTEKE 414 (822)
T ss_pred HHHHHHHHHHHhcccCCCEEEEECCh-------Hh-cCchHHHHHHHHHHHHHHcCCCEEEEECHHHHHHHHhcCccccE
Confidence 334445566665432 4566775511 11 121 1122356777776789999998765433222222 1122
Q ss_pred cccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCC---CCEEEEEeeecCCCeEEEEeeecCCCCCEEEEE
Q 022367 122 HVYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSD---APLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMV 198 (298)
Q Consensus 122 ~l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~---~~~~~~~k~r~~~~~~~~~~~~g~v~gk~ViIV 198 (298)
.....+.+.+++.+.. . +.++|+--..++..+- .+.+.|.+ ..+..++..+-.+|...+....+ .+.+++-|
T Consensus 415 ~~~~~e~a~~~l~~~~-~-~gDvVLlKGSr~~~le-~i~~~~~~~~~~~~~~Idl~al~~N~~~i~~~~~--~~~k~~aV 489 (822)
T PRK11930 415 FFKTTEAFLKSFAFLK-F-RNELILVKGARKFEFE-QITELLEQKVHETVLEINLNAIVHNLNYYRSKLK--PETKIMCM 489 (822)
T ss_pred EECCHHHHHHHHHHhc-C-CCCEEEEEcCCCCCHH-HHHHHHHHhhhhHHhhhhHHHHHHHHHHHHhhCC--CCCEEEEE
Confidence 2233455666666543 2 3334554455555443 33333321 12222222211111000000000 01122222
Q ss_pred eCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCC-EEEEecCC
Q 022367 199 DDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQ-EVIITNTI 254 (298)
Q Consensus 199 DDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~-~ii~tnti 254 (298)
==--..|.-+.++++.+.++|+..+.+... .+| ..|.+.+++ .|.+..-+
T Consensus 490 vKa~aYGhG~~~va~~l~~~G~~~f~Va~l-----~Ea-~~lr~~g~~~~Ilvl~~~ 540 (822)
T PRK11930 490 VKAFAYGSGSYEIAKLLQEHRVDYLAVAYA-----DEG-VSLRKAGITLPIMVMNPE 540 (822)
T ss_pred EeeccccCCHHHHHHHHHHCCCCEEEEeeH-----HHH-HHHHhcCCCCCEEEEeCC
Confidence 111236777788899999999886555441 233 456666776 66666554
No 184
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=26.64 E-value=2.9e+02 Score=23.61 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=30.3
Q ss_pred CceEEEeCCC-ccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEE
Q 022367 16 GEIYVQLQES-VRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAV 66 (298)
Q Consensus 16 GE~~v~i~~~-v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~v 66 (298)
|+..+.-... .+|++|.||......-+ -+..+++.+++.||+.+.++
T Consensus 92 ~~~~~~~~~~l~~G~~VLIVDDIi~TG~----Tl~~a~~~l~~~Ga~vv~~~ 139 (187)
T TIGR01367 92 GGMKLRRGFAVKPGEKFVAVEDVVTTGG----SLLEAIRAIEGQGGQVVGLA 139 (187)
T ss_pred CcEEEeecccCCCCCEEEEEEeeecchH----HHHHHHHHHHHcCCeEEEEE
Confidence 6666544433 47999999976543221 25556677899999877443
No 185
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=26.06 E-value=1.4e+02 Score=24.38 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=28.3
Q ss_pred CCCCCEEEEEeCccCch--------HHHHHHHHHHHHcCCCEEEEEE
Q 022367 189 DVKGKVAVMVDDMIDTA--------GTISKGAALLHQEGAREVYACS 227 (298)
Q Consensus 189 ~v~gk~ViIVDDii~TG--------~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (298)
|++||-||+.....+.. ++...=.+.+.++||.-|.++.
T Consensus 47 DVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~ 93 (137)
T cd04820 47 DVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLT 93 (137)
T ss_pred CCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEe
Confidence 89999887777665421 2455667778899999877776
No 186
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=26.05 E-value=1.4e+02 Score=24.55 Aligned_cols=40 Identities=28% Similarity=0.290 Sum_probs=28.5
Q ss_pred CCCCCEEEEEeCccC-------chH-------HHHHHHHHHHHcCCCEEEEEEE
Q 022367 189 DVKGKVAVMVDDMID-------TAG-------TISKGAALLHQEGAREVYACST 228 (298)
Q Consensus 189 ~v~gk~ViIVDDii~-------TG~-------Tl~~a~~~Lk~~Ga~~V~~~~t 228 (298)
|++||-|++..+-++ +|+ ++..=.+..+++||.-|.++..
T Consensus 45 DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~ 98 (142)
T cd04814 45 DVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHE 98 (142)
T ss_pred CCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeC
Confidence 899998888766542 111 4666677788999998777763
No 187
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=25.97 E-value=63 Score=27.51 Aligned_cols=24 Identities=29% Similarity=0.363 Sum_probs=15.3
Q ss_pred CCEEEEEeCccCchHHHHHHH-HHHH
Q 022367 192 GKVAVMVDDMIDTAGTISKGA-ALLH 216 (298)
Q Consensus 192 gk~ViIVDDii~TG~Tl~~a~-~~Lk 216 (298)
|. =+||||++..+.-+.... +.|.
T Consensus 83 G~-~VIvD~v~~~~~~l~d~l~~~L~ 107 (174)
T PF07931_consen 83 GN-NVIVDDVFLGPRWLQDCLRRLLA 107 (174)
T ss_dssp T--EEEEEE--TTTHHHHHHHHHHHT
T ss_pred CC-CEEEecCccCcHHHHHHHHHHhC
Confidence 44 467899999998877777 5554
No 188
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=25.56 E-value=93 Score=28.23 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=32.3
Q ss_pred CCEEEEEeCccCchHH--HHHHHHHHHHc-CCCEEEEEEEeccCCccHHHHh
Q 022367 192 GKVAVMVDDMIDTAGT--ISKGAALLHQE-GAREVYACSTHAVFSPPAIERL 240 (298)
Q Consensus 192 gk~ViIVDDii~TG~T--l~~a~~~Lk~~-Ga~~V~~~~tH~l~~~~a~~~l 240 (298)
.-+++|+|-+++-|.. ..+|.+.+.+. -.....++++|- .++++.+
T Consensus 165 ~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd---~~~I~~~ 213 (249)
T COG1134 165 EPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHD---LGAIKQY 213 (249)
T ss_pred CCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECC---HHHHHHh
Confidence 4479999999999976 45677776665 334778888884 3444444
No 189
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=25.30 E-value=66 Score=29.60 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=34.9
Q ss_pred chHHHHHHHHHHHHcCCCEEEEEEEeccCCccHH-HHhhcCCCCEEEEecCCCC
Q 022367 204 TAGTISKGAALLHQEGAREVYACSTHAVFSPPAI-ERLSSGLFQEVIITNTIPV 256 (298)
Q Consensus 204 TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~-~~l~~~~i~~ii~tnti~~ 256 (298)
.|+|-....+..++.+++.+..+..||+|.+.+. ..+++ ..++.|++=..
T Consensus 97 v~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~---~~~vltp~~~~ 147 (279)
T COG0287 97 VGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFEN---AVVVLTPSEGT 147 (279)
T ss_pred cccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCC---CEEEEcCCCCC
Confidence 6777777888888888776688889999988422 22333 46777777543
No 190
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=25.15 E-value=4.2e+02 Score=25.39 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCCeEEEEeecc----CcccccccccCCCchHHHHHHHHHHHhCCCEEEEEcCCccc
Q 022367 49 LVMIDACRRASAKNITAVIPYF----GYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQ 111 (298)
Q Consensus 49 l~~~~a~r~~~a~~i~~viPY~----~YsRqdr~~~~~~~~~a~~va~ll~~~g~d~ii~vdlHs~~ 111 (298)
--.+++++... .++++|+--+ .|++.. -+.+++.+...++|.++.+.-+...
T Consensus 313 ~~al~~l~~~~-~r~i~VlG~~~e~G~~~~~~----------~~~l~~~~~~~~~d~vi~~g~~~~~ 368 (417)
T TIGR01143 313 RAALDALARFP-GKKILVLGDMAELGEYSEEL----------HAEVGRYANSLGIDLVFLVGEEAAV 368 (417)
T ss_pred HHHHHHHHhCC-CCEEEEEcCchhcChHHHHH----------HHHHHHHHHHcCCCEEEEECHHHHH
Confidence 34456666553 4666776433 122211 1357777877778999998765543
No 191
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=25.10 E-value=4e+02 Score=22.07 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=45.6
Q ss_pred CeEEEEeeccCcccccccccCCCchHHHHHHHHHHHhCCCEEEEEcCCcccccCCCCcccccccchHHHHHHHHhhccCC
Q 022367 61 KNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISS 140 (298)
Q Consensus 61 ~~i~~viPY~~YsRqdr~~~~~~~~~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~l~~~~~~~ 140 (298)
++.++++-=++ || |.-..++.+++.|+.+|++-+.+ +.|.- -.+.++...+. +.
T Consensus 11 ~rprvlvak~G---lD-----gHd~gakvia~~l~d~GfeVi~~---------g~~~t-------p~e~v~aA~~~--dv 64 (143)
T COG2185 11 ARPRVLVAKLG---LD-----GHDRGAKVIARALADAGFEVINL---------GLFQT-------PEEAVRAAVEE--DV 64 (143)
T ss_pred CCceEEEeccC---cc-----ccccchHHHHHHHHhCCceEEec---------CCcCC-------HHHHHHHHHhc--CC
Confidence 45555555555 33 23345889999999999887776 66542 23344433232 22
Q ss_pred CCeEEEeeCCChHHHHHHHHHHcC
Q 022367 141 DDLVVVSPDVGGVARARAFAKKLS 164 (298)
Q Consensus 141 ~~~viv~p~~Gg~~~a~~la~~L~ 164 (298)
.-.++.+.+.+....+..+-+.|.
T Consensus 65 ~vIgvSsl~g~h~~l~~~lve~lr 88 (143)
T COG2185 65 DVIGVSSLDGGHLTLVPGLVEALR 88 (143)
T ss_pred CEEEEEeccchHHHHHHHHHHHHH
Confidence 233444556666677777776664
No 192
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=25.06 E-value=79 Score=23.28 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=25.0
Q ss_pred CCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEE
Q 022367 191 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYA 225 (298)
Q Consensus 191 ~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~ 225 (298)
+++.+++.++ +|.....++..|++.|-..|+.
T Consensus 60 ~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~~ 91 (103)
T cd01447 60 EDKPFVFYCA---SGWRSALAGKTLQDMGLKPVYN 91 (103)
T ss_pred CCCeEEEEcC---CCCcHHHHHHHHHHcChHHhEe
Confidence 4678888864 6777778889999999876654
No 193
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=25.00 E-value=1.3e+02 Score=22.22 Aligned_cols=32 Identities=28% Similarity=0.300 Sum_probs=24.6
Q ss_pred CCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEE
Q 022367 192 GKVAVMVDDMIDTAGTISKGAALLHQEGAREVYAC 226 (298)
Q Consensus 192 gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (298)
++.|++++ ++|.+...++..|+..|-..|+.+
T Consensus 65 ~~~vv~~c---~~g~~s~~~a~~L~~~G~~~v~~l 96 (105)
T cd01525 65 GKIIVIVS---HSHKHAALFAAFLVKCGVPRVCIL 96 (105)
T ss_pred CCeEEEEe---CCCccHHHHHHHHHHcCCCCEEEE
Confidence 66777775 567777778889999999887644
No 194
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=24.67 E-value=1e+02 Score=23.95 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=25.9
Q ss_pred CCCEEEEEeCccCchHHHHHHHHHHHHcCC-CEEEEE
Q 022367 191 KGKVAVMVDDMIDTAGTISKGAALLHQEGA-REVYAC 226 (298)
Q Consensus 191 ~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga-~~V~~~ 226 (298)
+++.++++ |.+|.....++..|++.|- +.|..+
T Consensus 71 ~~~~ivv~---C~~G~rs~~aa~~L~~~G~~~~v~~l 104 (122)
T cd01526 71 KDSPIYVV---CRRGNDSQTAVRKLKELGLERFVRDI 104 (122)
T ss_pred CCCcEEEE---CCCCCcHHHHHHHHHHcCCccceeee
Confidence 46778887 4688888889999999999 566654
No 195
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=24.24 E-value=3.1e+02 Score=23.77 Aligned_cols=46 Identities=22% Similarity=0.366 Sum_probs=31.3
Q ss_pred ceEEEeCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCC--CeEEEE
Q 022367 17 EIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASA--KNITAV 66 (298)
Q Consensus 17 E~~v~i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a--~~i~~v 66 (298)
+.+.++++++.++.|+++-++...-+. +.-.++.+++.|+ ++|+++
T Consensus 110 ~~y~~LP~~i~~~~VillDpmlaTG~s----~~~ai~~L~~~G~~~~~I~~v 157 (207)
T PF14681_consen 110 LYYNKLPEDIENRKVILLDPMLATGGS----AIAAIEILKEHGVPEENIIIV 157 (207)
T ss_dssp EEEEE--TTGTTSEEEEEESEESSSHH----HHHHHHHHHHTTG-GGEEEEE
T ss_pred eeHhhCCCCccCCEEEEEeccccchhh----HHHHHHHHHHcCCCcceEEEE
Confidence 356778888988999999877654443 4556777788776 677654
No 196
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=24.05 E-value=2.6e+02 Score=24.65 Aligned_cols=66 Identities=18% Similarity=0.298 Sum_probs=38.1
Q ss_pred chhHHHHHHHHHHHHhcCCCeEEEEeeccCcccccccc-cCC-CchHHHHHHHH-------HHHhCCCEEEEEcCCcc
Q 022367 42 NENIMELLVMIDACRRASAKNITAVIPYFGYARADRKT-QGR-ESIAAKLVANL-------ITEAGANRVLACDLHSG 110 (298)
Q Consensus 42 ~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~-~~~-~~~~a~~va~l-------l~~~g~d~ii~vdlHs~ 110 (298)
.|.++--.+...++++.+. .+|+|=++|.-..-.. .+| -.++...+.++ |...|+.+++.++=|-+
T Consensus 37 tD~~ia~~~a~~~a~~~~~---~lv~P~i~yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~ivivngHgG 111 (237)
T PF02633_consen 37 TDTLIAEAVAERAAERLGE---ALVLPPIPYGCSPHHMGFPGTISLSPETLIALLRDILRSLARHGFRRIVIVNGHGG 111 (237)
T ss_dssp HHHHHHHHHHHHHHHHHTH---EEE---B--BB-GCCTTSTT-BBB-HHHHHHHHHHHHHHHHHHT--EEEEEESSTT
T ss_pred HHHHHHHHHHHHHHHHCCc---EEEeCCCccccCcccCCCCCeEEeCHHHHHHHHHHHHHHHHHcCCCEEEEEECCHh
Confidence 3778888888888998886 6888888876543321 233 23444444333 44579999999998875
No 197
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=23.97 E-value=1.8e+02 Score=24.44 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=35.7
Q ss_pred CCEEEEEeCccCch---HHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEE
Q 022367 192 GKVAVMVDDMIDTA---GTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVI 249 (298)
Q Consensus 192 gk~ViIVDDii~TG---~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii 249 (298)
.|.++++=|-.+++ .++.++++.++++|.. |+++.. |-......+.|...+-..++
T Consensus 110 ~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~-i~~vgi-g~~~~~~L~~IA~~~~~~~~ 168 (186)
T cd01480 110 NKFLLVITDGHSDGSPDGGIEKAVNEADHLGIK-IFFVAV-GSQNEEPLSRIACDGKSALY 168 (186)
T ss_pred ceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCE-EEEEec-CccchHHHHHHHcCCcchhh
Confidence 35677777776543 3577888899999876 666653 33455566677665544433
No 198
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=23.95 E-value=2.7e+02 Score=23.10 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=26.0
Q ss_pred CccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEE
Q 022367 25 SVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAV 66 (298)
Q Consensus 25 ~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~v 66 (298)
..+|+.|+||-.....-. -+.-+++.++++|++.+.++
T Consensus 106 ~~~gk~VLIVDDIitTG~----Tl~~a~~~L~~~Ga~~v~~~ 143 (169)
T TIGR01090 106 IKPGQRVLIVDDLLATGG----TAEATDELIRKLGGEVVEAA 143 (169)
T ss_pred cCCcCEEEEEeccccchH----HHHHHHHHHHHcCCEEEEEE
Confidence 458999999865543222 25567788889999766654
No 199
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=23.84 E-value=1.5e+02 Score=22.56 Aligned_cols=33 Identities=15% Similarity=0.005 Sum_probs=25.9
Q ss_pred CCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEE
Q 022367 191 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYAC 226 (298)
Q Consensus 191 ~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (298)
+++.|++++ .+|.....++..|+..|-+.++.+
T Consensus 77 ~~~~iv~yc---~~g~~s~~~~~~l~~~G~~~v~~l 109 (118)
T cd01449 77 PDKPVIVYC---GSGVTACVLLLALELLGYKNVRLY 109 (118)
T ss_pred CCCCEEEEC---CcHHHHHHHHHHHHHcCCCCeeee
Confidence 577899985 468788888899999998766543
No 200
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=23.79 E-value=3.5e+02 Score=23.33 Aligned_cols=68 Identities=13% Similarity=0.078 Sum_probs=38.3
Q ss_pred HHHHHHHhCCCEEEEEcCCcccccCCCCcccccccchHHHHHHHHhhccCCCCeEEEeeCC---ChHHHHHHHHHHcCCC
Q 022367 90 VANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSDDLVVVSPDV---GGVARARAFAKKLSDA 166 (298)
Q Consensus 90 va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~l~~~~~~~~~~viv~p~~---Gg~~~a~~la~~L~~~ 166 (298)
.++.+...|+++|+.++-.. . ..|+ .......+++.+.+. ..+.++++-.. +|-.++..+|.+|+ .
T Consensus 68 ~~~~l~~~G~d~V~~~~~~~--~-~~~~----~e~~a~al~~~i~~~---~p~lVL~~~t~~~~~grdlaprlAarLg-a 136 (202)
T cd01714 68 ALREALAMGADRAILVSDRA--F-AGAD----TLATAKALAAAIKKI---GVDLILTGKQSIDGDTGQVGPLLAELLG-W 136 (202)
T ss_pred HHHHHHHcCCCEEEEEeccc--c-cCCC----hHHHHHHHHHHHHHh---CCCEEEEcCCcccCCcCcHHHHHHHHhC-C
Confidence 33444578999999976332 1 1222 011233455555442 23344554344 37789999999998 6
Q ss_pred CE
Q 022367 167 PL 168 (298)
Q Consensus 167 ~~ 168 (298)
++
T Consensus 137 ~l 138 (202)
T cd01714 137 PQ 138 (202)
T ss_pred Cc
Confidence 64
No 201
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.77 E-value=4e+02 Score=25.32 Aligned_cols=57 Identities=9% Similarity=0.135 Sum_probs=30.0
Q ss_pred CchhHHHHHHHHHHHHhcCCCeEEEEeeccCcccccccccCCCchHHHHHHHHHHHhCCCE
Q 022367 41 ANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANR 101 (298)
Q Consensus 41 ~~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~~~~~~~~a~~va~ll~~~g~d~ 101 (298)
+||+.=++--+++-++.... +|.+ +||.|+.-.+ +.+-..=..+.+.+.|.+.|+.-
T Consensus 261 vNDs~e~~~~L~~ll~~l~~-~vnl-IPyn~~~~~~--~~~ps~e~i~~f~~~L~~~gi~v 317 (349)
T PRK14463 261 LNDSLEDAKRLVRLLSDIPS-KVNL-IPFNEHEGCD--FRSPTQEAIDRFHKYLLDKHVTV 317 (349)
T ss_pred CCCCHHHHHHHHHHHhccCc-eEEE-EecCCCCCCC--CCCCCHHHHHHHHHHHHHCCceE
Confidence 45555555556666665543 5555 8888875321 22222223334556666667443
No 202
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=23.76 E-value=2.6e+02 Score=23.14 Aligned_cols=67 Identities=18% Similarity=0.164 Sum_probs=40.5
Q ss_pred HHHHHHhCCCEEEEEcCCcccccCCCCcccccccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHHHcCCCCE
Q 022367 91 ANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPL 168 (298)
Q Consensus 91 a~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~~L~~~~~ 168 (298)
++-+..+|+|+++.++-. .... |+ .......+++.+.+. ..+.++++-..-|-.++..+|.+|+ .++
T Consensus 44 ~~~~~~~Gad~v~~~~~~--~~~~-~~----~~~~a~al~~~i~~~---~p~~Vl~~~t~~g~~la~rlAa~L~-~~~ 110 (168)
T cd01715 44 AAALKAYGADKVLVAEDP--ALAH-YL----AEPYAPALVALAKKE---KPSHILAGATSFGKDLAPRVAAKLD-VGL 110 (168)
T ss_pred HHHHHhcCCCEEEEecCh--hhcc-cC----hHHHHHHHHHHHHhc---CCCEEEECCCccccchHHHHHHHhC-CCc
Confidence 333457899999998621 1111 22 111234455555442 2355667666777789999999998 554
No 203
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=23.71 E-value=4.7e+02 Score=22.38 Aligned_cols=75 Identities=17% Similarity=0.299 Sum_probs=42.1
Q ss_pred CCchHHHHHHHHHHHhCCCE-EEEEcCCcccccCCCCcccccccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHH
Q 022367 82 RESIAAKLVANLITEAGANR-VLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFA 160 (298)
Q Consensus 82 ~~~~~a~~va~ll~~~g~d~-ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la 160 (298)
+++..++.+.+.+...+.+. +.+.++ |.....+...+-+.+.+. ..++.++||-..||. .|..+|
T Consensus 12 p~S~Ka~~l~~~~~~~~~~~~~~~p~l-----------~~~p~~a~~~l~~~i~~~--~~~~~~liGSSlGG~-~A~~La 77 (187)
T PF05728_consen 12 PQSFKAQALKQYFAEHGPDIQYPCPDL-----------PPFPEEAIAQLEQLIEEL--KPENVVLIGSSLGGF-YATYLA 77 (187)
T ss_pred CCCHHHHHHHHHHHHhCCCceEECCCC-----------CcCHHHHHHHHHHHHHhC--CCCCeEEEEEChHHH-HHHHHH
Confidence 44556667788887766442 222111 111111222333334332 234589999999998 477889
Q ss_pred HHcCCCCEEEE
Q 022367 161 KKLSDAPLAIV 171 (298)
Q Consensus 161 ~~L~~~~~~~~ 171 (298)
...+ .+.+.+
T Consensus 78 ~~~~-~~avLi 87 (187)
T PF05728_consen 78 ERYG-LPAVLI 87 (187)
T ss_pred HHhC-CCEEEE
Confidence 8887 666444
No 204
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=23.67 E-value=1.5e+02 Score=21.76 Aligned_cols=31 Identities=32% Similarity=0.403 Sum_probs=23.4
Q ss_pred CCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEE
Q 022367 191 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYA 225 (298)
Q Consensus 191 ~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~ 225 (298)
+++.++++. .+|.....++..|+..|-. |+.
T Consensus 55 ~~~~iv~~c---~~G~rs~~aa~~L~~~G~~-v~~ 85 (95)
T cd01534 55 RGARIVLAD---DDGVRADMTASWLAQMGWE-VYV 85 (95)
T ss_pred CCCeEEEEC---CCCChHHHHHHHHHHcCCE-EEE
Confidence 466777775 5787778888899999987 543
No 205
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=23.44 E-value=1.7e+02 Score=26.49 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=29.9
Q ss_pred CCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEE
Q 022367 189 DVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 227 (298)
Q Consensus 189 ~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (298)
+++||+|+|+ -+|++-..++..|.+.|+.+|.++.
T Consensus 120 ~~~~k~vlVl----GaGg~a~ai~~aL~~~g~~~V~v~~ 154 (278)
T PRK00258 120 DLKGKRILIL----GAGGAARAVILPLLDLGVAEITIVN 154 (278)
T ss_pred CCCCCEEEEE----cCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 5678898877 4699999999999999988888876
No 206
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=23.30 E-value=1.9e+02 Score=22.24 Aligned_cols=31 Identities=6% Similarity=0.114 Sum_probs=24.1
Q ss_pred CCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEE
Q 022367 192 GKVAVMVDDMIDTAGTISKGAALLHQEGAREVYA 225 (298)
Q Consensus 192 gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~ 225 (298)
++.++++ |++|.....++..|++.|-..+..
T Consensus 60 ~~~IVly---C~~G~rS~~aa~~L~~~G~~~v~~ 90 (104)
T PRK10287 60 NDTVKLY---CNAGRQSGQAKEILSEMGYTHAEN 90 (104)
T ss_pred CCeEEEE---eCCChHHHHHHHHHHHcCCCeEEe
Confidence 4567777 558888888899999999887643
No 207
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=22.98 E-value=1.4e+02 Score=24.29 Aligned_cols=51 Identities=8% Similarity=-0.046 Sum_probs=33.8
Q ss_pred chHHHHHHHHHHHHcCCCEEEEEEEeccCC-----ccHHHHhhcCCCCEEEEecCC
Q 022367 204 TAGTISKGAALLHQEGAREVYACSTHAVFS-----PPAIERLSSGLFQEVIITNTI 254 (298)
Q Consensus 204 TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~-----~~a~~~l~~~~i~~ii~tnti 254 (298)
+-..+....+.|++.|...+.+++-=.++. ....+++++.+++.||..+|-
T Consensus 67 ~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~ 122 (137)
T PRK02261 67 GEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTD 122 (137)
T ss_pred CHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCC
Confidence 345677888999999887665554211221 123467888899999987773
No 208
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=22.69 E-value=1.4e+02 Score=29.04 Aligned_cols=36 Identities=8% Similarity=0.087 Sum_probs=31.2
Q ss_pred cCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEE
Q 022367 188 GDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 227 (298)
Q Consensus 188 g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (298)
+++.|++|+| +-+|+.-..+++.|.+.|+..|+++.
T Consensus 177 ~~l~~kkvlv----iGaG~~a~~va~~L~~~g~~~I~V~n 212 (414)
T PRK13940 177 DNISSKNVLI----IGAGQTGELLFRHVTALAPKQIMLAN 212 (414)
T ss_pred cCccCCEEEE----EcCcHHHHHHHHHHHHcCCCEEEEEC
Confidence 5788999985 46899999999999999999888876
No 209
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=22.59 E-value=1.7e+02 Score=29.11 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=30.2
Q ss_pred CCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeeccC
Q 022367 24 ESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFG 71 (298)
Q Consensus 24 ~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~ 71 (298)
..++|+.|++|-.....- . - +.-++.+||++||++|.+.+-.=|
T Consensus 349 ~~v~gk~VlLVDD~ItTG-t-T--l~~~~~~Lr~aGAk~V~~~~~~p~ 392 (469)
T PRK05793 349 VNVEGKRVVLIDDSIVRG-T-T--SKRLVELLRKAGAKEVHFRVSSPP 392 (469)
T ss_pred cccCCCEEEEEccccCch-H-H--HHHHHHHHHHcCCCEEEEEEECCC
Confidence 567899999985432211 1 2 334888999999999998764433
No 210
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=22.45 E-value=61 Score=24.45 Aligned_cols=19 Identities=32% Similarity=0.655 Sum_probs=15.2
Q ss_pred HHHHhcCCCeEEEEeeccCc
Q 022367 53 DACRRASAKNITAVIPYFGY 72 (298)
Q Consensus 53 ~a~r~~~a~~i~~viPY~~Y 72 (298)
+.|...|+++| .|+|||=.
T Consensus 44 ~~l~~~g~~~i-vvvP~fL~ 62 (105)
T PF01903_consen 44 ERLVAQGARRI-VVVPYFLF 62 (105)
T ss_dssp HHHHCCTCSEE-EEEEESSS
T ss_pred HHHHHcCCCeE-EEEeeeec
Confidence 66777799997 77899975
No 211
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=22.31 E-value=29 Score=26.96 Aligned_cols=42 Identities=17% Similarity=0.347 Sum_probs=27.8
Q ss_pred HHhcCCCeEEEEeeccCcccccccccCCCchHHHHHHHHHHHh
Q 022367 55 CRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEA 97 (298)
Q Consensus 55 ~r~~~a~~i~~viPY~~YsRqdr~~~~~~~~~a~~va~ll~~~ 97 (298)
+|+-.... ....||||..+..+-......+.+.-+.+||+..
T Consensus 8 lRr~C~~~-C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~ 49 (101)
T PF03195_consen 8 LRRRCSPD-CVLAPYFPADQPQRFANVHKVFGVSNISKMLQEL 49 (101)
T ss_pred HhCCCCCC-CcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhC
Confidence 44544444 5789999988765543444556677788888764
No 212
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=22.29 E-value=1.3e+02 Score=28.17 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=35.9
Q ss_pred EEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEecCCC
Q 022367 194 VAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIP 255 (298)
Q Consensus 194 ~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tnti~ 255 (298)
++|||||=. ..+......|.+.| .+..-|.|+. .|.+.|+..-+|-++.-=-+|
T Consensus 2 ~~iiVDdd~---a~~~~l~~iLs~~~--~~~~~~~~~~---eal~~Le~~kpDLifldI~mp 55 (361)
T COG3947 2 RIIIVDDDA---AIVKLLSVILSRAG--HEVRSCSHPV---EALDLLEVFKPDLIFLDIVMP 55 (361)
T ss_pred cEEEEcchH---HHHHHHHHHHHhcc--chhhccCCHH---HHHHHHHhcCCCEEEEEeecC
Confidence 589999843 45555667788887 5556666764 577777776677666544444
No 213
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=21.98 E-value=1.5e+02 Score=24.70 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=20.1
Q ss_pred HHHHHHHHcCCCEEEEEEEecc--CCccHHHHhhcCCCC
Q 022367 210 KGAALLHQEGAREVYACSTHAV--FSPPAIERLSSGLFQ 246 (298)
Q Consensus 210 ~a~~~Lk~~Ga~~V~~~~tH~l--~~~~a~~~l~~~~i~ 246 (298)
-|++.|-++|.++|.+...-|- .+++..++|++++|+
T Consensus 86 PC~~ali~agi~rVvva~~DPnp~Vag~G~~~L~~aGi~ 124 (146)
T COG0117 86 PCADALIKAGVARVVVAMLDPNPLVAGGGLARLRAAGIE 124 (146)
T ss_pred chHHHHHHhCCCEEEEEecCCCccccCchHHHHHHcCCe
Confidence 3555566666666655554332 444555666665543
No 214
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=21.75 E-value=3.1e+02 Score=23.62 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=27.4
Q ss_pred CCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEe
Q 022367 24 ESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVI 67 (298)
Q Consensus 24 ~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~vi 67 (298)
..++|++|+||-.....- .. +.-.++.++++|++.+.++.
T Consensus 136 ~~~~gk~VlIVDDVitTG-~T---l~~ai~~l~~~Ga~~v~v~v 175 (200)
T PRK02277 136 ASVEGKRCVIVDDVITSG-TT---MKETIEYLKEHGGKPVAVVV 175 (200)
T ss_pred ccCCcCEEEEEeeccCch-HH---HHHHHHHHHHcCCEEEEEEE
Confidence 457899999996654322 22 44566778899998876544
No 215
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=21.67 E-value=3.8e+02 Score=24.47 Aligned_cols=128 Identities=15% Similarity=0.154 Sum_probs=62.2
Q ss_pred eeeeeeCCCceEEEeCCCc-----cCCeEEEEecCCCCCchhHHHHHHHHHHHHh-cCCCeEEEEeeccCcccccccccC
Q 022367 8 IKIKRFADGEIYVQLQESV-----RGCHVFLVQPSCPPANENIMELLVMIDACRR-ASAKNITAVIPYFGYARADRKTQG 81 (298)
Q Consensus 8 ~~~~~F~dGE~~v~i~~~v-----~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~-~~a~~i~~viPY~~YsRqdr~~~~ 81 (298)
+.+++-+|.+..+++..+. .|-+.. + .|.|.+-+|..+= +|+ ....+++++- +
T Consensus 5 V~~k~~v~~~~~i~v~~~~~~~~~~gv~~~-i----n~~D~~AvEeAlr---Lke~~~~~eV~vlt--~----------- 63 (260)
T COG2086 5 VLIKKVVDDESKIRVDPDTGTLDRSGVPLS-I----NPFDLNAVEEALR---LKEKGYGGEVTVLT--M----------- 63 (260)
T ss_pred EEEEEECCccceEEEecCCCccccCCCCcc-c----ChhhHHHHHHHHH---hhccCCCceEEEEE--e-----------
Confidence 3456678888888886331 111211 1 2345555554332 333 2234555542 1
Q ss_pred CCchHHHHHHHHHHHhCCCEEEEEcCCcccccCCCCcccccccchHHHHHHHHhhcc----CCCCeEEEeeCCChHHHHH
Q 022367 82 RESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAI----SSDDLVVVSPDVGGVARAR 157 (298)
Q Consensus 82 ~~~~~a~~va~ll~~~g~d~ii~vdlHs~~~~~~f~i~~~~l~~~~~la~~l~~~~~----~~~~~viv~p~~Gg~~~a~ 157 (298)
|.+- +....+-.-++|+|+.+.+.=- -|. ..+.+.....|++++.+..+ -++. +.|...-....
T Consensus 64 Gp~~-a~~~lr~aLAmGaDraili~d~------~~~-~~d~~~ta~~Laa~~~~~~~~LVl~G~q----a~D~~t~qvg~ 131 (260)
T COG2086 64 GPPQ-AEEALREALAMGADRAILITDR------AFA-GADPLATAKALAAAVKKIGPDLVLTGKQ----AIDGDTGQVGP 131 (260)
T ss_pred cchh-hHHHHHHHHhcCCCeEEEEecc------ccc-CccHHHHHHHHHHHHHhcCCCEEEEecc----cccCCccchHH
Confidence 2111 2222222335788888875411 121 23344466777777765432 1222 12444444567
Q ss_pred HHHHHcCCCCEE
Q 022367 158 AFAKKLSDAPLA 169 (298)
Q Consensus 158 ~la~~L~~~~~~ 169 (298)
.+|..|| .|..
T Consensus 132 ~lAe~Lg-~P~~ 142 (260)
T COG2086 132 LLAELLG-WPQV 142 (260)
T ss_pred HHHHHhC-Ccee
Confidence 7888898 7763
No 216
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=21.37 E-value=1.7e+02 Score=24.68 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHHHcCCCEEEEEEEeccCCccHHHHhhcCCCCEEEEecCC
Q 022367 204 TAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTI 254 (298)
Q Consensus 204 TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~~a~~~l~~~~i~~ii~tnti 254 (298)
|-.|+..+.+..++.|.+++.++.+.|--...+.+.++. .++-|++|.--
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~ 61 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEG-DLKVVVVTHHA 61 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhccc-CceEEEEEeec
Confidence 778999999999999999998888766544444454443 36777777544
No 217
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=21.11 E-value=2.6e+02 Score=23.94 Aligned_cols=82 Identities=21% Similarity=0.300 Sum_probs=49.5
Q ss_pred HHHHHHHhcCCCeEEEE-------eeccCccccccccc-CCCchHHH---------HHHHHHHHhCCCEEEEEcCCcc-c
Q 022367 50 VMIDACRRASAKNITAV-------IPYFGYARADRKTQ-GRESIAAK---------LVANLITEAGANRVLACDLHSG-Q 111 (298)
Q Consensus 50 ~~~~a~r~~~a~~i~~v-------iPY~~YsRqdr~~~-~~~~~~a~---------~va~ll~~~g~d~ii~vdlHs~-~ 111 (298)
-+.+.+++.||+.+-.+ +|=+.-.|- .. .....+|. .-++.|.++| ..+|++||.-- +
T Consensus 48 ~I~~~L~~~Ga~~vlG~~~d~~~~ip~L~~~R~---~v~~~GIy~ADVVLVPLEDGDR~EAL~~mG-K~VIaIDLNPLSR 123 (178)
T PF02006_consen 48 KIAELLREHGAEEVLGVNPDASERIPGLDHERA---KVSKEGIYSADVVLVPLEDGDRTEALVKMG-KTVIAIDLNPLSR 123 (178)
T ss_pred HHHHHHHHcCCCEeeccCCcccccCCCCCCccc---eECcccceeccEEEeccCCCcHHHHHHHcC-CeEEEEeCCCccc
Confidence 46678899999887666 454444443 21 11122332 2467788887 89999999753 3
Q ss_pred ccCCCCcc-ccccc-chHHHHHHHHh
Q 022367 112 SMGYFDIP-VDHVY-GQPVILDYLAS 135 (298)
Q Consensus 112 ~~~~f~i~-~~~l~-~~~~la~~l~~ 135 (298)
+...=+++ +||+. +.|.+.++.++
T Consensus 124 Tar~AtitIVDni~RA~p~~~~~~~~ 149 (178)
T PF02006_consen 124 TARTATITIVDNITRAIPNMIEFARE 149 (178)
T ss_pred ccccCceeeehhHHHHHHHHHHHHHH
Confidence 33322344 46654 67777776654
No 218
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=20.98 E-value=1.9e+02 Score=26.64 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=30.7
Q ss_pred CCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEE
Q 022367 189 DVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 227 (298)
Q Consensus 189 ~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (298)
+++|++++|+ -.||+-.+++-.|++.|+++|.++-
T Consensus 123 ~~~~~~vlil----GAGGAarAv~~aL~~~g~~~i~V~N 157 (283)
T COG0169 123 DVTGKRVLIL----GAGGAARAVAFALAEAGAKRITVVN 157 (283)
T ss_pred ccCCCEEEEE----CCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 4568889875 5899999999999999999999886
No 219
>PF14502 HTH_41: Helix-turn-helix domain
Probab=20.98 E-value=1e+02 Score=20.56 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=16.9
Q ss_pred chHHHHHHHHHHHHcCCCEE
Q 022367 204 TAGTISKGAALLHQEGAREV 223 (298)
Q Consensus 204 TG~Tl~~a~~~Lk~~Ga~~V 223 (298)
+=+|+..|.+.|++.||-.+
T Consensus 19 s~GtiQ~Alk~Le~~gaI~L 38 (48)
T PF14502_consen 19 SRGTIQNALKFLEENGAIKL 38 (48)
T ss_pred chhHHHHHHHHHHHCCcEEe
Confidence 45899999999999998654
No 220
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=20.91 E-value=1.6e+02 Score=22.71 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=24.8
Q ss_pred CCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEE
Q 022367 191 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYAC 226 (298)
Q Consensus 191 ~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (298)
+++.++++ |.+|.+...++..|++.|-..++.+
T Consensus 63 ~~~~ivv~---C~~G~rs~~aa~~L~~~G~~~v~~l 95 (117)
T cd01522 63 KDRPVLLL---CRSGNRSIAAAEAAAQAGFTNVYNV 95 (117)
T ss_pred CCCeEEEE---cCCCccHHHHHHHHHHCCCCeEEEC
Confidence 35567775 4678888888999999998877654
No 221
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.78 E-value=3.3e+02 Score=26.38 Aligned_cols=134 Identities=12% Similarity=0.156 Sum_probs=62.4
Q ss_pred eeeeCCCceEEEeCCCccCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEeeccCcccccccccCCCchHHHH
Q 022367 10 IKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKL 89 (298)
Q Consensus 10 ~~~F~dGE~~v~i~~~v~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~~viPY~~YsRqdr~~~~~~~~~a~~ 89 (298)
+..|..-+-+.++-....|. .+|.-| .+.| .-.+.-.+++++....+++++|+.-+. .|.- +. .
T Consensus 299 L~~f~g~~~R~e~v~~~~gv-~~idDs--~atN--~~a~~~al~~l~~~~~~~iilI~Gg~~---k~~d------~~--~ 362 (448)
T PRK03803 299 LRTFTGLPHRCEWVREVAGV-DYYNDS--KGTN--VGATVAAIEGLGAHIQGKLVLIAGGDG---KGAD------FS--P 362 (448)
T ss_pred HhhCCCCCCceEEEEEeCCe-EEEEcC--CcCC--HHHHHHHHHhhhhcCCCCEEEEECCCC---CCCC------HH--H
Confidence 35565444455443322231 233333 2323 333444455554432246878874321 1221 11 2
Q ss_pred HHHHHHHhCCCEEEEEcCCcccccCCCC--cccccccchHHHHHHHHhhccCCCCeEEEeeCCChHHHHHHHHH
Q 022367 90 VANLITEAGANRVLACDLHSGQSMGYFD--IPVDHVYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAK 161 (298)
Q Consensus 90 va~ll~~~g~d~ii~vdlHs~~~~~~f~--i~~~~l~~~~~la~~l~~~~~~~~~~viv~p~~Gg~~~a~~la~ 161 (298)
+.+++... ++.++.+..+...+...+. .+...........+++.+.. ...+.++++|..+++..-+.+.+
T Consensus 363 l~~~l~~~-~~~vil~G~~~~~i~~~l~~~~~~~~~~~~~~a~~~a~~~a-~~gdvVL~SPa~aSfd~f~~~~~ 434 (448)
T PRK03803 363 LREPVAKY-VRAVVLIGRDADKIAAALGGAVPLVRVATLAEAVAKAAELA-QAGDIVLLSPACASLDMFKNFEA 434 (448)
T ss_pred HHHHHHhh-CCEEEEECCCHHHHHHHHhcCCCEEEeCCHHHHHHHHHHhC-CCCCEEEeCchhhcccccCCHHH
Confidence 44445443 6778887766554332221 12211222333444443322 34567899999888765554443
No 222
>PLN02469 hydroxyacylglutathione hydrolase
Probab=20.50 E-value=1.6e+02 Score=26.65 Aligned_cols=50 Identities=24% Similarity=0.219 Sum_probs=34.2
Q ss_pred cCCCCCEEEEEeCccCchHHHHHHHHHHHHcCCCEEEEEEEeccCCc-cHHHHhhc
Q 022367 188 GDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSP-PAIERLSS 242 (298)
Q Consensus 188 g~v~gk~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~l~~~-~a~~~l~~ 242 (298)
.+-.++.+++||- | ......+.+++.|..-.++++||.-.+- ++...|.+
T Consensus 18 ~d~~~~~~vlIDp----~-~~~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~ 68 (258)
T PLN02469 18 IDESTKDAAVVDP----V-DPEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKK 68 (258)
T ss_pred EeCCCCeEEEECC----C-ChHHHHHHHHHcCCcccEEEecCCCCccccCHHHHHH
Confidence 3434567999984 3 3466777788889877899999987664 34444443
No 223
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=20.42 E-value=1.1e+02 Score=22.70 Aligned_cols=21 Identities=10% Similarity=0.213 Sum_probs=16.8
Q ss_pred HHHHHHhcCCCeEEEEeeccCc
Q 022367 51 MIDACRRASAKNITAVIPYFGY 72 (298)
Q Consensus 51 ~~~a~r~~~a~~i~~viPY~~Y 72 (298)
.++.+++.|.++| +++|+|+.
T Consensus 50 ~l~~l~~~g~~~v-vvvPl~~~ 70 (101)
T cd03409 50 AIRELAEEGYQRV-VIVPLAPV 70 (101)
T ss_pred HHHHHHHcCCCeE-EEEeCccc
Confidence 4667778888887 78899987
No 224
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=20.38 E-value=2e+02 Score=20.65 Aligned_cols=30 Identities=13% Similarity=0.333 Sum_probs=21.6
Q ss_pred CCchhHHHHHHHHHHHHhcCCCeEEEEeec
Q 022367 40 PANENIMELLVMIDACRRASAKNITAVIPY 69 (298)
Q Consensus 40 ~~~~~l~ell~~~~a~r~~~a~~i~~viPY 69 (298)
+.++.+-++.-.++.+...+....+++-||
T Consensus 22 ~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~ 51 (80)
T smart00166 22 PSSDTLRTVYEFVSAALTDGNDPFTLNSPF 51 (80)
T ss_pred CCCCcHHHHHHHHHHcccCCCCCEEEEeCC
Confidence 346778888888877766666677777665
No 225
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=20.21 E-value=1.3e+02 Score=24.21 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=22.1
Q ss_pred EEEEEeCccCchHHHHHHHHHHHHcCCCEE-EEEEEeccCC
Q 022367 194 VAVMVDDMIDTAGTISKGAALLHQEGAREV-YACSTHAVFS 233 (298)
Q Consensus 194 ~ViIVDDii~TG~Tl~~a~~~Lk~~Ga~~V-~~~~tH~l~~ 233 (298)
..+|||=.. +.-....+.+++.|.+++ .++.||.-..
T Consensus 16 ~~iliD~g~---~~~~~~~~~l~~~~~~~i~~i~iTH~H~D 53 (183)
T smart00849 16 GAILIDTGP---GEAEDLLAELKKLGPKDIDAIILTHGHPD 53 (183)
T ss_pred ceEEEeCCC---ChhHHHHHHHHHcCchhhcEEEecccCcc
Confidence 467777331 222245555777876666 6677887654
No 226
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=20.01 E-value=3.7e+02 Score=22.71 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=24.2
Q ss_pred CCc-cCCeEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEE
Q 022367 24 ESV-RGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNIT 64 (298)
Q Consensus 24 ~~v-~g~~v~iiqs~~~~~~~~l~ell~~~~a~r~~~a~~i~ 64 (298)
..+ +|++|+||-..-..-. -+.-++++++++|++-+-
T Consensus 102 g~~~~g~~VlIVDDvitTG~----Tl~~~~~~l~~~Ga~vv~ 139 (176)
T PRK13812 102 GRLDEGEEVVVLEDIATTGQ----SAVDAVEALREAGATVNR 139 (176)
T ss_pred ecCCCcCEEEEEEEeeCCCH----HHHHHHHHHHHCCCeEEE
Confidence 344 7999999865533222 255677888899986443
Done!